NCBI C++ ToolKit
Functions
dust_filter.hpp File Reference

Calls sym dust lib in algo/dustmask and returns CSeq_locs for use by BLAST. More...

#include <objects/seqloc/Seq_loc.hpp>
#include <algo/blast/api/sseqloc.hpp>
#include <algo/blast/api/blast_nucl_options.hpp>
#include <algo/dustmask/symdust.hpp>
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Functions

void Blast_FindDustFilterLoc (TSeqLocVector &query, const CBlastNucleotideOptionsHandle *nucl_handle)
 Finds dust locations for a given set of sequences by calling the the symmetric dust lib. More...
 
void Blast_FindDustFilterLoc (TSeqLocVector &query, Uint4 level=CSymDustMasker::DEFAULT_LEVEL, Uint4 window=CSymDustMasker::DEFAULT_WINDOW, Uint4 linker=CSymDustMasker::DEFAULT_LINKER)
 Overloaded version of the function above which takes the filtering implementation's arguments directly, TSeqLocVector version. More...
 
void Blast_FindDustFilterLoc (CBlastQueryVector &query, Uint4 level=CSymDustMasker::DEFAULT_LEVEL, Uint4 window=CSymDustMasker::DEFAULT_WINDOW, Uint4 linker=CSymDustMasker::DEFAULT_LINKER)
 Overloaded version of the function above which takes the filtering implementation's arguments directly, CBlastQueryVector version. More...
 

Detailed Description

Calls sym dust lib in algo/dustmask and returns CSeq_locs for use by BLAST.

Definition in file dust_filter.hpp.

Modified on Thu Feb 22 17:12:28 2024 by modify_doxy.py rev. 669887