NCBI C++ ToolKit
Functions
editing_actions.cpp File Reference
#include <ncbi_pch.hpp>
#include <objmgr/util/seq_loc_util.hpp>
#include <objmgr/util/feature.hpp>
#include <objmgr/util/sequence.hpp>
#include <objmgr/seq_annot_ci.hpp>
#include <objmgr/bioseq_ci.hpp>
#include <objmgr/object_manager.hpp>
#include <gui/widgets/edit/bioseq_editor.hpp>
#include <objtools/edit/string_constraint.hpp>
#include <objtools/cleanup/cleanup.hpp>
#include <gui/objutils/cmd_create_feat.hpp>
#include <gui/objutils/cmd_change_seq_feat.hpp>
#include <gui/objutils/cmd_create_desc.hpp>
#include <gui/objutils/cmd_del_desc.hpp>
#include <gui/objutils/descriptor_change.hpp>
#include <gui/objutils/cmd_change_bioseq_inst.hpp>
#include <objects/seqfeat/seqfeat_macros.hpp>
#include <objects/seqfeat/Gb_qual.hpp>
#include <objects/general/Dbtag.hpp>
#include <objects/general/Object_id.hpp>
#include <objtools/edit/cds_fix.hpp>
#include <objtools/edit/apply_object.hpp>
#include <objects/seq/Seq_data.hpp>
#include <objmgr/seq_vector.hpp>
#include <objtools/edit/source_edit.hpp>
#include <gui/widgets/edit/source_field_name_panel.hpp>
#include <gui/widgets/edit/rna_field_name_panel.hpp>
#include <gui/widgets/edit/cds_gene_prot_field_name_panel.hpp>
#include <gui/packages/pkg_sequence_edit/misc_field_panel.hpp>
#include <gui/widgets/edit/struct_fieldvalue_panel.hpp>
#include <gui/widgets/edit/feature_field_name_panel.hpp>
#include <gui/packages/pkg_sequence_edit/retranslate_cds.hpp>
#include <gui/packages/pkg_sequence_edit/editing_actions.hpp>
#include <gui/packages/pkg_sequence_edit/editing_action_features.hpp>
#include <gui/packages/pkg_sequence_edit/editing_action_biosource.hpp>
#include <gui/packages/pkg_sequence_edit/editing_action_desc.hpp>
#include <gui/packages/pkg_sequence_edit/editing_action_seqid.hpp>
#include <gui/packages/pkg_sequence_edit/editing_action_misc.hpp>
#include <gui/packages/pkg_sequence_edit/editing_action_constraint.hpp>
+ Include dependency graph for editing_actions.cpp:

Go to the source code of this file.

Go to the SVN repository for this file.

Functions

 USING_SCOPE (objects)
 
CIRef< IEditingActionCreateAction (CSeq_entry_Handle seh, const string &field, CFieldNamePanel::EFieldType field_type, int subtype, const string &ncRNA_class, CConstRef< objects::CSeq_submit > submit)
 
int GetSubtype (CFieldNamePanel *field_name_panel, string &ncRNA_class)
 
int CorrectForncRNASubtypes (CSeqFeatData::ESubtype subtype, string &ncRNA_class)
 
CRef< CObjectGetNewObject (CConstRef< CObject > object)
 
CRef< CCmdCompositeGetReplacementCommand (CConstRef< CObject > oldobj, CRef< CObject > newobj, CScope &scope, const string &cmd_name)
 
vector< CConstRef< CObject > > GetObjects (CSeq_entry_Handle seh, const string &field, CFieldNamePanel::EFieldType field_type, int subtype, const string &ncRNA_class, CConstRef< CSeq_submit > submit, CRef< CEditingActionConstraint > constraint, vector< CSeq_entry_Handle > *descr_context)
 

Function Documentation

◆ CorrectForncRNASubtypes()

int CorrectForncRNASubtypes ( CSeqFeatData::ESubtype  subtype,
string ncRNA_class 
)

◆ CreateAction()

CIRef<IEditingAction> CreateAction ( CSeq_entry_Handle  seh,
const string field,
CFieldNamePanel::EFieldType  field_type,
int  subtype,
const string ncRNA_class,
CConstRef< objects::CSeq_submit >  submit 
)

Definition at line 839 of file editing_actions.cpp.

References CreateActionBiosource(), CreateActionCdsGeneProt(), CreateActionDesc(), CreateActionFeat(), CreateActionMisc(), CreateActionRna(), CreateActionSeqid(), CFieldNamePanel::eFieldType_BankITComment, CFieldNamePanel::eFieldType_CDSGeneProt, CFieldNamePanel::eFieldType_Comment, CFieldNamePanel::eFieldType_DBLink, CFieldNamePanel::eFieldType_Dbxref, CFieldNamePanel::eFieldType_DefLine, CFieldNamePanel::eFieldType_Feature, CFieldNamePanel::eFieldType_FileId, CFieldNamePanel::eFieldType_FlatFile, CFieldNamePanel::eFieldType_GeneralId, CFieldNamePanel::eFieldType_LocalId, CFieldNamePanel::eFieldType_Misc, CFieldNamePanel::eFieldType_MolInfo, CFieldNamePanel::eFieldType_Pub, CFieldNamePanel::eFieldType_RNA, CFieldNamePanel::eFieldType_SeqId, CFieldNamePanel::eFieldType_Source, CFieldNamePanel::eFieldType_StructuredComment, CFieldNamePanel::eFieldType_Taxname, CFieldNamePanel::eFieldType_TaxnameAfterBinomial, CSeqFeatData::eSubtype_any, CSeqFeatData::GetTypeFromSubtype(), and NULL.

Referenced by CExportTableDlg::AddCdsGeneMrnaTable(), CExportTableDlg::AddDblinkToTable(), CExportTableDlg::AddPubsToTable(), CExportTableDlg::AddRnaToTable(), CExportTableDlg::AddSourceToTable(), CEditingActionSummaryConstraint::CEditingActionSummaryConstraint(), IActionPanel::CreateAction1(), IActionPanel::CreateAction2_imp(), CQualChoicePanel::CreateEditingAction(), CSameConstraintMatcher::CSameConstraintMatcher(), IActionPanel::GetAutopopulateValue(), CReplaceSingleFieldPanel::GetCommand(), CEditCdsFrame::GetCommand(), CBulkCDS::GetCommandFromValuesTable(), GetObjects(), CBulkCDS::GetValuesTableFromSeqEntry(), CMiscSeqTable::s_GetValueToSehMap(), and CMiscSeqTable::x_CreateEditingActions().

◆ GetNewObject()

CRef<CObject> GetNewObject ( CConstRef< CObject object)

◆ GetObjects()

vector<CConstRef<CObject> > GetObjects ( CSeq_entry_Handle  seh,
const string field,
CFieldNamePanel::EFieldType  field_type,
int  subtype,
const string ncRNA_class,
CConstRef< CSeq_submit submit,
CRef< CEditingActionConstraint constraint,
vector< CSeq_entry_Handle > *  descr_context 
)

◆ GetReplacementCommand()

CRef<CCmdComposite> GetReplacementCommand ( CConstRef< CObject oldobj,
CRef< CObject newobj,
CScope scope,
const string cmd_name 
)

◆ GetSubtype()

int GetSubtype ( CFieldNamePanel field_name_panel,
string ncRNA_class 
)

◆ USING_SCOPE()

USING_SCOPE ( objects  )
Modified on Mon Jun 17 05:10:02 2024 by modify_doxy.py rev. 669887