entry.h File Reference

#include <objects/seq/Bioseq.hpp>
#include "ftablock.h"
#include "entry.h"

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Classes
struct	Section
struct	Entry

Typedefs
using	SectionPtr = Section *
using	EntryPtr = Entry *

Functions
DataBlkPtr	LoadEntry (ParserPtr pp, size_t offset, size_t len)
EntryPtr	LoadEntryGenbank (ParserPtr pp, size_t offset, size_t len)

Typedef Documentation

EntryPtr

using EntryPtr = Entry*

Definition at line 102 of file entry.h.

SectionPtr

using SectionPtr = Section*

Definition at line 53 of file entry.h.

Function Documentation

LoadEntry()

DataBlkPtr LoadEntry	(	ParserPtr	pp,
		size_t	offset,
		size_t	len
	)

Definition at line 300 of file entry.cpp.

References Parser::EMBL, ERR_FORMAT_DirSubMode, ERR_FORMAT_NonAsciiChar, ERR_INPUT_CannotReadEntry, ErrPostEx, ErrPostStr, Parser::ffbuf, FileReadBuf(), Parser::format, fta_StringCpy(), i, len, DataBlk::len, MemFree(), DataBlk::mOffset, DataBlk::mpData, DataBlk::mpNext, Parser::NCBI, offset, ParFlat_ENTRYNODE, FileBuf::set_offs(), SEV_FATAL, SEV_WARNING, Parser::source, and StringNew().

Referenced by EmblAscii(), EmblIndex(), GenBankAsciiOrig(), SprotAscii(), and SprotIndex().

LoadEntryGenbank()

EntryPtr LoadEntryGenbank	(	ParserPtr	pp,
		size_t	offset,
		size_t	len
	)

Definition at line 217 of file entry.cpp.

References Parser::EMBL, ERR_FORMAT_DirSubMode, ERR_FORMAT_NonAsciiChar, ERR_INPUT_CannotReadEntry, ErrPostEx, ErrPostStr, Parser::ffbuf, FileReadBuf(), Parser::format, fta_StringCpy(), i, len, DataBlk::len, MemFree(), DataBlk::mOffset, DataBlk::mpNext, Parser::NCBI, offset, ParFlat_ENTRYNODE, FileBuf::set_offs(), SEV_FATAL, SEV_WARNING, Parser::source, and StringNew().

Referenced by GenBankAscii().