#include <ncbi_pch.hpp>
#include <gui/widgets/seq_graphic/feature_ds.hpp>
#include <gui/widgets/seq_graphic/seqgraphic_job.hpp>
#include <gui/widgets/seq_graphic/cds_glyph.hpp>
#include <gui/widgets/seq_graphic/histogram_glyph.hpp>
#include <gui/widgets/seq_graphic/clone_placement_glyph.hpp>
#include <gui/widgets/seq_graphic/layout_group.hpp>
#include <gui/widgets/seq_graphic/layout_policy.hpp>
#include <gui/widgets/seq_graphic/named_group.hpp>
#include <gui/widgets/seq_graphic/gene_model_config.hpp>
#include <gui/widgets/seq_graphic/gene_model_group.hpp>
#include <gui/widgets/seq_graphic/feature_filter.hpp>
#include <gui/widgets/seq_graphic/comment_glyph.hpp>
#include <gui/widgets/seq_graphic/clone_feature_sorter.hpp>
#include <gui/widgets/seq_graphic/dbvar_feature_sorter.hpp>
#include <gui/widgets/seq_graphic/graph_cache.hpp>
#include <gui/widgets/seq_graphic/bed_coverage_graph.hpp>
#include <gui/widgets/seq_graphic/vcf_heatmap.hpp>
#include <gui/widgets/seq_graphic/intron_glyph.hpp>
#include <gui/widgets/seq_graphic/graph_utils.hpp>
#include <gui/widgets/seq_graphic/seqgraphic_utils.hpp>
#include <objmgr/util/feature.hpp>
#include <objmgr/util/sequence.hpp>
#include <objects/general/Object_id.hpp>
#include <objects/general/Dbtag.hpp>
#include <objects/seqalign/Std_seg.hpp>
#include <objects/genesbyloc/GBL_Reply.hpp>
#include <objects/genesbyloc/GBL_Data.hpp>
#include <objects/genesbyloc/GBL_Gene.hpp>
#include <gui/objutils/density_map.hpp>
#include <serial/serial.hpp>
#include <connect/ncbi_types.h>
#include <connect/ncbi_conn_stream.hpp>
#include <serial/objistr.hpp>

Include dependency graph for feature_ds.cpp:

Go to the SVN repository for this file.

Classes
class	CSGFeatureJob
	CSGFeatureJob: a job class for loading annotated features from a given sequence and visible range. More...

struct	CSGFeatureJob::SLandmarkFeat

class	CGeneModelFeatJob
	CGeneModelFeatJob: a job class for loading annotated main features, including genes, RNAs, CDSs and exons from a given sequence and a given visible range. More...

class	CBatchFeatJob
	CBatchFeatJob: a job class for loading annotated features from a given a set of sequences within the corresponding visible ranges. More...

class	CSGCalcFeatHistJob
	CSGCalcFeatHistJob. More...

struct	SLandmarkFeatByScore
	CSGFeatureJob implementation. More...

struct	SLandmarkFeatBySeqPos

Typedefs
typedef map< int, int >	TId2Wt

Functions
	USING_SCOPE (objects)

static bool	s_HasFeatXref (const CSeq_feat &feat, CSeqFeatData_Base::E_Choice choice)

static bool	s_HasCDS (const CLinkedFeature &linked_feat)

static bool	s_IsGnomonModel (const CSeq_feat &feat)

static bool	s_HasTag (const CSeq_feat &feat, const set< string > &tags)

static bool	s_IsSelect (const CLinkedFeature &feat)

static bool	s_IsCCDS (const CLinkedFeature &linked_feat)

bool	s_GetGeneWeight (TId2Wt &genes, TGi gi, const TSeqRange &r, size_t retmax)

Variables
static const int	kMaxObjNum = 250000

static const size_t	kMaxChildNum = 500

static const float	kSeqZoomLevel = 0.125

static const char *	kUnsortedGroupName = "--unsorted--"

static const float	kMinScaleForMapping = 16.

static const char *	kGeneByLocUrl