feature_glyph.cpp File Reference

#include <ncbi_pch.hpp>
#include <gui/widgets/seq_graphic/feature_glyph.hpp>
#include <gui/widgets/seq_graphic/rendering_ctx.hpp>
#include <gui/widgets/seq_graphic/seqgraphic_utils.hpp>
#include <gui/widgets/seq_graphic/layout_track_impl.hpp>
#include <gui/widgets/seq_graphic/layout_group.hpp>
#include <gui/widgets/seq_graphic/named_group.hpp>
#include <gui/widgets/seq_graphic/config_utils.hpp>
#include <gui/widgets/gl/ruler.hpp>
#include <gui/objutils/obj_fingerprint.hpp>
#include <gui/objutils/utils.hpp>
#include <gui/objutils/gui_object_info_seq_feat.hpp>
#include <gui/objutils/tooltip.hpp>
#include <gui/objutils/snp_gui.hpp>
#include <gui/opengl/gltexturefont.hpp>
#include <gui/opengl/irender.hpp>
#include <objects/seqfeat/Variation_ref.hpp>
#include <objects/seqfeat/Variation_inst.hpp>
#include <objects/seqfeat/Delta_item.hpp>
#include <objects/seqfeat/Feat_id.hpp>
#include <objects/general/Dbtag.hpp>
#include <objects/general/Object_id.hpp>
#include <objects/general/User_object.hpp>
#include <objects/seqloc/Seq_interval.hpp>
#include <objects/seq/Seq_literal.hpp>
#include <objects/seqloc/Giimport_id.hpp>
#include <objmgr/util/sequence.hpp>
#include <objtools/alnmgr/aln_converters.hpp>
#include <objtools/snputil/snp_utils.hpp>
#include <util/sequtil/sequtil_manip.hpp>
#include <corelib/ncbi_stack.hpp>
#include <math.h>

Include dependency graph for feature_glyph.cpp:

Go to the source code of this file.

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Classes
struct	SRangeSorter< T >
	sorting functor for finding a range inside a collection of layout objects More...

Functions
	USING_SCOPE (objects)
static int	s_GetLiteralLength (const CVariation_ref &var)
TVPUnit	s_AdjustScreenCoordinate (TModelUnit x)

Variables
static const int	kRulerHeight = 16
	feature ruler height. More...
static const int	kVertSpace = 2
	vertical space between elements. More...
static const TModelUnit	kRSiteMarkerHeight = 0.5
	Restriction sites marker height (relative to the height of the bar) More...
static const TModelUnit	kRSiteMarkerWidth = 0.4
	Restriction sites marker width (absolute) More...
static const TModelUnit	kRSiteMarkerThreshold = 2
	Restriction sites marker visibility threshold (ie if the marker's width is smaller then the threshold, markers are not drawn) More...
static const float	kMinScaleForRulerLabels = 16.
	Shoudl match feature_ds.cpp::kMinScaleForMapping i.e. More...

Function Documentation

s_AdjustScreenCoordinate()

TVPUnit s_AdjustScreenCoordinate

(

TModelUnit

x

)

Definition at line 1757 of file feature_glyph.cpp.

Referenced by CFeatGlyph::x_DrawProjectedRuler().

s_GetLiteralLength()

static int s_GetLiteralLength ( const CVariation_ref &  var )

static

Definition at line 686 of file feature_glyph.cpp.

References delta(), CVariation_ref_Base::GetData(), CVariation_inst_Base::GetDelta(), CVariation_ref_Base::C_Data::GetInstance(), CVariation_ref_Base::C_Data::IsInstance(), CVariation_inst_Base::IsSetDelta(), ITERATE, and len.

Referenced by CFeatGlyph::x_DrawFeatureBar_sv(), CFeatGlyph::x_DrawInnerLabels(), and CFeatGlyph::x_DrawLabelWithYPinned().

USING_SCOPE()

USING_SCOPE

(

objects

)

Variable Documentation

kMinScaleForRulerLabels

const float kMinScaleForRulerLabels = 16.

static

Shoudl match feature_ds.cpp::kMinScaleForMapping i.e.

what mapping is not created then do not show ruler labels

Definition at line 91 of file feature_glyph.cpp.

Referenced by CFeatGlyph::x_DrawProjectedRuler(), and CFeatGlyph::x_DrawRuler().

kRSiteMarkerHeight

const TModelUnit kRSiteMarkerHeight = 0.5

static

Restriction sites marker height (relative to the height of the bar)

Definition at line 81 of file feature_glyph.cpp.

Referenced by CFeatGlyph::x_DrawFeatureBar(), CFeatGlyph::x_DrawRSites(), and CFeatGlyph::x_UpdateBoundingBox().

kRSiteMarkerThreshold

const TModelUnit kRSiteMarkerThreshold = 2

static

Restriction sites marker visibility threshold (ie if the marker's width is smaller then the threshold, markers are not drawn)

Definition at line 87 of file feature_glyph.cpp.

Referenced by CFeatGlyph::x_DrawFeatureBar(), CFeatGlyph::x_DrawRSites(), and CFeatGlyph::x_UpdateBoundingBox().

kRSiteMarkerWidth

const TModelUnit kRSiteMarkerWidth = 0.4

static

Restriction sites marker width (absolute)

Definition at line 84 of file feature_glyph.cpp.

Referenced by CFeatGlyph::x_DrawFeatureBar(), CFeatGlyph::x_DrawRSites(), and CFeatGlyph::x_UpdateBoundingBox().

kRulerHeight

const int kRulerHeight = 16

static

feature ruler height.

Definition at line 75 of file feature_glyph.cpp.

Referenced by CFeatGlyph::GetBarCenter(), CFeatGlyph::x_Draw(), CFeatGlyph::x_DrawProjectedRuler(), CFeatGlyph::x_DrawRuler(), and CFeatGlyph::x_UpdateBoundingBox().

kVertSpace

const int kVertSpace = 2

static

vertical space between elements.

Definition at line 78 of file feature_glyph.cpp.

Referenced by CFeatGlyph::GetBarCenter(), CFeatGlyph::x_Draw(), CFeatGlyph::x_DrawLabelWithXPinned(), and CFeatGlyph::x_UpdateBoundingBox().