feature_track.cpp File Reference

#include <ncbi_pch.hpp>
#include <gui/widgets/seq_graphic/feature_track.hpp>
#include <gui/widgets/seq_graphic/intron_track.hpp>
#include <gui/widgets/seq_graphic/seqgraphic_ds_manager.hpp>
#include <gui/widgets/seq_graphic/seqgraphic_utils.hpp>
#include <gui/widgets/seq_graphic/layout_track_proxy.hpp>
#include <gui/widgets/seq_graphic/rendering_ctx.hpp>
#include <gui/widgets/seq_graphic/histogram_glyph.hpp>
#include <gui/widgets/seq_graphic/clone_placement_glyph.hpp>
#include <gui/widgets/seq_graphic/config_utils.hpp>
#include <gui/widgets/seq_graphic/feature_filter.hpp>
#include <gui/widgets/seq_graphic/gene_model_group.hpp>
#include <gui/widgets/seq_graphic/named_group.hpp>
#include <gui/widgets/seq_graphic/clone_feature_sorter.hpp>
#include <gui/widgets/seq_graphic/dbvar_feature_sorter.hpp>
#include <gui/widgets/wx/wx_utils.hpp>
#include <gui/utils/rgba_color.hpp>
#include <gui/objutils/utils.hpp>
#include <gui/objutils/label.hpp>
#include <objmgr/util/feature.hpp>
#include <objmgr/util/sequence.hpp>
#include <objmgr/annot_ci.hpp>
#include <objects/seqfeat/SeqFeatData.hpp>
#include <objects/general/Object_id.hpp>
#include <objects/general/User_object.hpp>
#include <wx/menu.h>

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Typedefs
typedef SStaticPair< const char *, CFeatureTrack::ELayout >	TLayoutStr
	CFeatureTrack. More...
typedef CStaticArrayMap< string, CFeatureTrack::ELayout >	TLayoutMap
typedef SStaticPair< const char *, ELinkedFeatDisplay >	TLinkedFeatStr
typedef CStaticArrayMap< string, ELinkedFeatDisplay >	TLinkedFeatMap

Functions
	USING_SCOPE (objects)
	DEFINE_STATIC_ARRAY_MAP (TLayoutMap, sm_LayoutMap, s_LayoutStrs)
	DEFINE_STATIC_ARRAY_MAP (TLinkedFeatMap, sm_LinkedFeatMap, s_LinkedFeatStrs)
bool	s_IsSetWeight (const CSeq_feat &feat)
int	s_GetWeight (const CSeq_feat &feat)
static bool	s_FeatByWeight (const CRef< CSeqGlyph > &g1, const CRef< CSeqGlyph > &g2)

Variables
static const string	kBaseKey = "GBPlugins.SeqGraphicFeatureTrack"
static const TLayoutStr	s_LayoutStrs []
static const TLinkedFeatStr	s_LinkedFeatStrs []
static const string	kWeightKey = "Weight"
static const string	kDispSettings = "DisplaySettings"

Typedef Documentation

TLayoutMap

typedef CStaticArrayMap<string, CFeatureTrack::ELayout> TLayoutMap

Definition at line 85 of file feature_track.cpp.

TLayoutStr

typedef SStaticPair<const char*, CFeatureTrack::ELayout> TLayoutStr

CFeatureTrack.

Definition at line 73 of file feature_track.cpp.

TLinkedFeatMap

typedef CStaticArrayMap<string, ELinkedFeatDisplay> TLinkedFeatMap

Definition at line 120 of file feature_track.cpp.

TLinkedFeatStr

typedef SStaticPair<const char*, ELinkedFeatDisplay> TLinkedFeatStr

Definition at line 110 of file feature_track.cpp.

Function Documentation

DEFINE_STATIC_ARRAY_MAP() [1/2]

DEFINE_STATIC_ARRAY_MAP	(	TLayoutMap	,
		sm_LayoutMap	,
		s_LayoutStrs
	)

DEFINE_STATIC_ARRAY_MAP() [2/2]

DEFINE_STATIC_ARRAY_MAP	(	TLinkedFeatMap	,
		sm_LinkedFeatMap	,
		s_LinkedFeatStrs
	)

s_FeatByWeight()

static bool s_FeatByWeight ( const CRef< CSeqGlyph > &  g1, const CRef< CSeqGlyph > &  g2  )

static

Definition at line 1074 of file feature_track.cpp.

References s_GetWeight().

Referenced by CFeatureTrack::x_SortFeaturesByWeight().

s_GetWeight()

int s_GetWeight

(

const CSeq_feat &

feat

)

Definition at line 429 of file feature_track.cpp.

References CSeq_feat_Base::GetExts(), CSeq_feat_Base::IsSetExts(), ITERATE, kDispSettings, and kWeightKey.

Referenced by s_FeatByWeight().

s_IsSetWeight()

bool s_IsSetWeight

(

const CSeq_feat &

feat

)

Definition at line 414 of file feature_track.cpp.

References CSeq_feat_Base::GetExts(), CSeq_feat_Base::IsSetExts(), ITERATE, kDispSettings, and kWeightKey.

Referenced by CFeatureTrack::x_AdjustFeatureLayout().

USING_SCOPE()

USING_SCOPE

(

objects

)

Variable Documentation

kBaseKey

const string kBaseKey = "GBPlugins.SeqGraphicFeatureTrack"

static

Definition at line 67 of file feature_track.cpp.

Referenced by CFeatureTrack::x_LoadSettings().

kDispSettings

const string kDispSettings = "DisplaySettings"

static

Definition at line 412 of file feature_track.cpp.

Referenced by s_GetWeight(), and s_IsSetWeight().

kWeightKey

const string kWeightKey = "Weight"

static

Definition at line 411 of file feature_track.cpp.

Referenced by s_GetWeight(), and s_IsSetWeight().

s_LayoutStrs

const TLayoutStr s_LayoutStrs[]

static

Initial value:

= {
    { "Adaptive",              CFeatureTrack::eLayout_AdaptiveLayered },
    { "Adaptive - inline",     CFeatureTrack::eLayout_AdaptiveInline },
    { "Columns",               CFeatureTrack::eLayout_ExpandedColumn },
    { "Expanded by position",  CFeatureTrack::eLayout_ExpandedByPos },
    { "Expanded by size",      CFeatureTrack::eLayout_ExpandedBySize },
    { "Layered",               CFeatureTrack::eLayout_ExpandedLayered },
    { "OneLine",               CFeatureTrack::eLayout_OneLine },
    { "Packed",                CFeatureTrack::eLayout_Packed },
}

Definition at line 74 of file feature_track.cpp.

s_LinkedFeatStrs

const TLinkedFeatStr s_LinkedFeatStrs[]

static

Initial value:

= {
    { "Default",  ELinkedFeatDisplay::eLFD_Default },
    { "Expandable",   ELinkedFeatDisplay::eLFD_Expandable },
    { "Hidden",   ELinkedFeatDisplay::eLFD_Hidden },
    { "OnParent",   ELinkedFeatDisplay::eLFD_PackedWithParent },
    { "Packed",   ELinkedFeatDisplay::eLFD_Packed },
    { "ParentHidden",   ELinkedFeatDisplay::eLFD_ParentHidden },
}

Definition at line 111 of file feature_track.cpp.