#include <ncbi_pch.hpp>
#include <corelib/ncbiapp.hpp>
#include <corelib/ncbifile.hpp>
#include <serial/objostrasn.hpp>
#include <objects/seqset/Bioseq_set.hpp>
#include <objtools/flatfile/flatfile_parser.hpp>
#include <objtools/flatfile/fta_parse_buf.h>
#include <objtools/logging/listener.hpp>

Include dependency graph for flat2asn.cpp:

Go to the SVN repository for this file.

Classes
class	CFlat2AsnApp

class	CFlat2AsnListener

Macros
#define	THIS_FILE "flat2asn.cpp"

Typedefs
using	TConfig = Parser

Functions
	USING_SCOPE (objects)

static bool	InitConfig (const CArgs &args, Parser &config)

int	main (int argc, const char *argv[])

Variables
	USING_NCBI_SCOPE

Macro Definition Documentation

◆ THIS_FILE

#define THIS_FILE "flat2asn.cpp"

Definition at line 51 of file flat2asn.cpp.

Typedef Documentation

◆ TConfig

using TConfig = Parser

Definition at line 56 of file flat2asn.cpp.

Function Documentation

◆ InitConfig()

static bool InitConfig	(	const CArgs &	args,
		Parser &	config
	)

static

Definition at line 59 of file flat2asn.cpp.

References Parser::BioseqSet, format, fta_set_format_source(), Parser::HTGS, Parser::HTGSCON, Parser::Relaxed, Parser::Release, Parser::Seqsubmit, rapidjson::source, and string.

Referenced by CFlat2AsnApp::x_ParseArgs().

◆ main()

int main	(	int	argc,
		const char *	argv[]
	)

Definition at line 385 of file flat2asn.cpp.

◆ USING_SCOPE()

USING_SCOPE ( objects )

Variable Documentation

◆ USING_NCBI_SCOPE

USING_NCBI_SCOPE

Definition at line 53 of file flat2asn.cpp.

Classes

Macros

Typedefs

Functions

Variables