- Examples
- /home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.
Definition at line 160 of file replacements.h.
Referenced by _blk_get_col_data(), _blk_null_error(), _ct_bind_data(), _ct_fetch_cursor(), CBBox< 3 >::Add(), CBDB_ExtBlobMap::Add(), CRawPointer::Add(), bm::bit_vistor_copy_functor< BV >::add_bits(), bm::bit_visitor_callback_adaptor< VCBT, size_type >::add_bits(), bm::bit_visitor_back_inserter_adaptor< BII, size_type >::add_bits(), TestDecodeFunctor::add_bits(), bm::bit_vistor_copy_functor< BV >::add_range(), bm::bit_visitor_callback_adaptor< VCBT, size_type >::add_range(), bm::bit_visitor_back_inserter_adaptor< BII, size_type >::add_range(), TestDecodeFunctor::add_range(), AddCdregionToSmallGenomeSet(), AddCDSAndProtForBigGoodNucProtSet(), CBlkEdtFeatLocationPanel::AddCommand(), CWriteDB_GiMask::AddGiMask(), AddInsertWithGaps(), AddNIDSeqId(), CBoundaryPoints::AddPixelRect(), AddProteinToSeqEntry(), COffsetData_Factory::AddSeqSeg(), CWriteDB_HeaderFile::AddSequence(), CWriteDB_SequenceFile::AddSequence(), AddToIndexBlk(), CAlignmentAssistant::AdjustAlign(), CFeatureGenerator::SImplementation::AdjustAlignment(), CAdjustForConsensusSpliceSite::AdjustCDS(), CPaintSequence::AdjustFeatStartStop(), CPaintSequence::AdjustFeatureRange(), variation::AdjustHgvsCoord(), CPaintSequence::AdjustProtFeatRange(), CSplitCDSwithTooManyXs::AdjustSingleCDS(), CAmbiguousRegion::Append(), CFeatTrim::Apply(), CDB_BigDateTime::Assign(), variation_ref::CHgvsParser::SOffsetPoint::Assign(), variation::CHgvsParser::SOffsetPoint::Assign(), AssignIntronSite(), BackboneCellInit(), BackboneCellNew(), base64url_encode(), BLAST_CreateMixedFrameDNATranslation(), BLAST_GetAllTranslations(), Blast_GetPartialTranslation(), Blast_HSPListAdjustOffsets(), Blast_MaskTheResidues(), BlastGetStartForGappedAlignmentNucl(), BlastHashLookupIndexQueryExactMatches(), BlastLookupIndexQueryExactMatches(), BlastRPSScanSubject(), BlastSetUp_Filter(), BOOST_AUTO_TEST_CASE(), BuildBigGoodNucProtSet(), BuildGoodByteGraph(), BuildGoodEcoSetWithAlign(), CPhyloTreePS::CalcForces(), CFeatGapInfo::CalculateRelevantIntervals(), call_with_args(), CConn_FTPDownloadStream::CConn_FTPDownloadStream(), CConn_FTPUploadStream::CConn_FTPUploadStream(), CFileLock::CFileLock(), CAmbigDataBuilder::Check(), check_modifier(), CheckPropagatedCDSLocation(), CheckTags(), CkLocusLinePos(), CMemoryFile::CMemoryFile(), CFixForTransSplicing::CombineFeatures(), compile_branch(), CLZOCompression::CompressBlockStream(), convert_lower_case(), python::ConvertCVariant2PCObject(), CFeatureGenerator::SImplementation::ConvertMixedAlignToAnnot(), DM_AlignedScore::ConvertScoresToDistances(), CSRSearch_Impl< index_t >::copyOffsets(), CreateAlignRow(), variation::CreateDeltaForOffset(), CAsnElementPrimitive::CreateItem(), Threader::CreateQrySeq(), CreateTranslatedProteinSequence(), CSeqDBIdxFile::CSeqDBIdxFile(), ct_fetch(), CTooltipFrame::CTooltipFrame(), CSearch< LEGACY, NHITS >::DecodeOffset(), CSubjectMap::DecodeOffset(), CSeq_loc_CI_Impl::DeleteRange(), CAlignmentAssistant::DeleteSelection(), CSampleNetCacheClient::DemoPartialRead(), CDataFrame< MAX_SIZE >::Deserialize(), bm::sparse_vector_deserializer< SV >::deserialize_planes(), CDemoApp::Dispatch(), CPhyloTreePS::Draw(), OpenGLRenderer::DrawHalfWorm(), CPaintSequence::DrawOffsetTranslation(), CPaintSequence::DrawTranslation(), CAsnCacheStats::DumpIndex(), emit_stack_frame_release(), COffsetData_Factory::EncodeAndAddOffset(), CCmdAddCDS::Execute(), CMemoryFile::Extend(), CExtendPartialFeatDlg::ExtendCDS(), bm::sparse_vector< Val, BV >::extract(), bm::sparse_vector< Val, BV >::extract_planes(), bm::sparse_vector< Val, BV >::extract_range(), FilterQueriesForMapping(), CFindPattern::Find(), python::CStmtStr::find_named(), python::CStmtStr::find_numeric(), python::CStmtStr::find_TSQL(), CFindEditSequence::FindMatchPositions(), FindNewLocations(), FindNextOffset(), CEditSeqEndsWithAlign::FindPosition(), bm::for_each_bit_blk(), bm::for_each_bit_range_no_check(), bm::for_each_gap_blk(), bm::for_each_gap_blk_range(), fta_get_dblink_user_object(), fta_get_mga_user_object(), fta_get_project_user_object(), fta_parse_tpa_tsa_block(), g_CreateMNP(), g_CreateSNV(), GapEditScriptPartialCopy(), get_branchlength(), get_plasmid(), IEditingAction::GetActionCommand(), CDensegGraphicDataSource::GetAlnSeqString(), CWGSDb_Impl::SAmbiguityInfo::GetBaseType(), CBDB_ExtBlobMap::GetBlobLoc(), CFeatTrim::GetCdsFrame(), CCleanup::GetCodeBreakForLocation(), CAddGlobalCodeBreak::GetCommand(), CExtendPartialFeatDlg::GetCommand(), CFarPointerSeq::GetCommand(), CFixForTransSplicing::GetCommand(), CFuseFeaturesDlg::GetCommand(), CTruncateCDS::GetCommand(), CRetranslateCDS::GetCommand(), CEditCdsFrame::GetCommand(), python::CCursor::GetCVariant(), CKMDataNode::GetData(), CMemoryChunk::GetData(), CSeqDB::GetDate(), GetDeltaSeqForPosition(), GetDescrComment(), GetDRlineDataSP(), GetEditLocationCommand(), GetEmblBlock(), GetEmblDate(), GetEmblDescr(), CFeatureGenerator::SImplementation::GetExonStructure(), CGetFeature::GetFeatInfo(), CSeqDBFileMemMap::GetFileDataPtr(), GetFirstItemOffset(), GetFlatBiomol(), GetGenBankBlock(), GetGenBankDescr(), GetGeneralOrLocal(), CMinHashFile::GetHits(), CReference::GetHTMLFreeString(), GetIdHashOrValue(), CSeqMapSwitchPoint::GetInsert(), CSeqTextDataSource::GetIntervalBreaks(), CIntronOffsetHelper::GetIntronOffset(), pythonpp::CList::GetItem(), pythonpp::CTuple::GetItem(), pythonpp::CList::GetItemFast(), pythonpp::CTuple::GetItemFast(), CItemsInfo::GetItemsByOffset(), CAlnMap::GetLen(), GetLenSubNode(), CRegexp_loc::GetLoc(), GetLoc(), CBDB_BlobMetaContainer::GetLoc(), CSeqUtils::GetMappingInfo(), CSeqDBGiMask::GetMaskData(), CAutoDef::GetMasterLocation(), CRegexp::GetMatch(), GetNewGeneralProtId(), GetNewLocalProtId(), GetNewProtId(), GetNewProtIdFromExistingProt(), CSeqDBVol::GetOidAtOffset(), SNetCacheAPIImpl::GetPartReader(), CNetCacheAPI::GetPartReader(), CFlatFileSeqBlockIterator::GetPosition(), CBufferedLineReader::GetPosition(), GetPositionsForAlignAnnot(), getput_arg(), CAlnMap::GetRange(), SNetICacheClientImpl::GetReadStreamPart(), CNetICacheClient::GetReadStreamPart(), GetReleaseInfo(), GetReplacementSeqIds(), IEditingAction::GetRetranslateCdsCmd(), GetRetranslateCDSCommand(), CAlnVec::GetSegSeqString(), CAlnMap::GetSegType(), CSeqDBGiIndex::GetSeqGI(), CAlnMap::GetSeqLen(), CAlnMap::GetSeqPosFromSeqPos(), CDensegGraphicDataSource::GetSeqString(), CSeqDictionary< Alphabet >::GetSequence(), CBandAligner::GetShift(), GetSPDate(), GetSPDescrComment(), GetSprotDescr(), CAlnMap::GetStart(), CAlnMap::GetStop(), C4naTo2na::GetTable(), C2naReverse::GetTable(), C2naCmp::GetTable(), C4naCmp::GetTable(), C2naRevCmp::GetTable(), C4naRevCmp::GetTable(), CDB_BigDateTime::GetTimeFormat(), CReadUtil::GetTrackOffset(), gzoffset64(), gzseek(), gzseek64(), hardfloat_call_with_args(), CDenseSegHit::HasAlignment(), bm::sparse_vector< Val, BV >::import(), bm::sparse_vector< Val, BV >::import_u(), bm::sparse_vector< Val, BV >::import_u_nocheck(), IndexABioseq(), input(), InsertDatablkVal(), internal_dfa_match(), CConvertBadCdsAndRnaToMiscFeat::IsExtendableLeft(), IsExtendableLeft(), CConvertBadCdsAndRnaToMiscFeat::IsExtendableRight(), IsExtendableRight(), variation_ref::CHgvsParser::SOffsetPoint::IsOffset(), variation::CHgvsParser::SOffsetPoint::IsOffset(), bm::sparse_vector_deserializer< SV >::load_null_plane(), bm::sparse_vector_deserializer< SV >::load_planes_off_table(), LoadEntry(), LoadEntryGenbank(), CFileLock::Lock(), CDockLayoutTree::LogPost(), compile_time_bits::const_set_map_base< _Traits, void, tag_DuplicatesNo >::lower_bound(), CMemoryFileMap::Map(), CMemoryFile::Map(), CAlignMap::MapRangeEditedToOrig(), CAlignMap::MapRangeOrigToEdited(), MarkUsed(), match(), match_ref(), mbedtls_ct_memcpy_offset(), mdb_cursor_put(), CCdsToMatPeptide::MergeConvert(), message_len(), neighbor_query(), CTrackData::Offset(), CDense_diag::OffsetRow(), CDense_seg::OffsetRow(), CSeq_align::OffsetRow(), CStd_seg::OffsetRow(), CFloatingFrame::OnIdle(), CEditSequence::OnRetranslate(), CResizingIterator< TSeq, TVal >::operator TVal(), CWinMaskCountsGenerator::operator()(), CPrimeCacheApplication::CCacheBioseq::operator()(), CFastBuffer< KEmbeddedSize, TType >::operator+(), CSyncQueue_I< Type, Container, TNativeIterator, Traits >::operator+(), operator+(), CSyncQueue_I< Type, Container, TNativeIterator, Traits >::operator+=(), CSyncQueue_I< Type, Container, TNativeIterator, Traits >::operator-(), CSyncQueue_I< Type, Container, TNativeIterator, Traits >::operator-=(), rapidjson::internal::BigInteger::operator<<=(), CResizingIterator< TSeq, TVal >::operator=(), CSyncQueue_I< Type, Container, TNativeIterator, Traits >::operator[](), parse_regex(), ParseSPFeat(), rapidjson::GenericReader< SourceEncoding, TargetEncoding, StackAllocator >::ParseStringToStream(), CValidError_imp::PostErr(), CAlnVecRow::PrepareRendering(), rapidjson::internal::Prettify(), SBuildInfo::Print(), CPdf::PrintLineBuffer(), CBlastFormat::PrintPhiResult(), CArgDependencyGroup::PrintUsage(), SCommandLineParserImpl::PrintWordWrapped(), CSearch_Base< LEGACY, NHITS, derived_t >::ProcessBoundaryOffset(), AlnUtil::ProcessDataLine(), CSearch_Base< LEGACY, NHITS, derived_t >::ProcessOffset(), PropagateToTarget(), push_mem_inst(), CChunkFile::RawRead(), CSeqIdChunkFile::RawRead(), CChunkFile::Read(), CSeqIdChunkFile::Read(), CBDB_ExtBlobStore< TBV >::ReadBlob(), CObjectIStreamXml::ReadEscapedChar(), CBlastDbBlob::ReadInt1(), CBlastDbBlob::ReadInt2(), CBlastDbBlob::ReadInt4(), CBlastDbBlob::ReadInt8(), CNetICacheClient::ReadPart(), CNetCacheAPI::ReadPart(), CFeatureTableReader_Imp::ReadSequinFeatureTable(), CBlastDbBlob::ReadString(), CSeqDBRawFile::ReadSwapped(), CBlastDbBlob::ReadVarInt(), CDrawingPanel::Render(), CString_constraint::ReplaceStringConstraintPortionInString(), CTaxValidationAndCleanup::ReportIncrementalTaxLookupErrors(), variation_ref::CHgvsParser::SOffsetPoint::Reset(), variation::CHgvsParser::SOffsetPoint::Reset(), CRetranslateCDS::RetranslateCDSCommand(), ReverseAlignmentStrand(), CFarPointerSeq::ReverseRow(), s_2naReverse(), variation::CVariationUtil::s_AddIntronicOffsets(), variation_ref::CVariationUtil::s_AddIntronicOffsets(), s_AddPSSMNeighboringWords(), s_AddPSSMWordHits(), s_AddPSSMWordHitsCore(), s_AddWordHit(), s_AdjustPrelimScoreVectorOID(), s_AdjustSubjectForSraSearch(), s_AdjustSubjectForTranslatedSraSearch(), s_CalculateStarts(), s_CompressedAddNeighboringWords(), s_DumpHeader(), s_DumpSparseMap(), s_FindAlignRawSeqOffsetById(), s_FindNextOffset(), s_FindUnusedLines(), s_ForecastPattern(), s_GetAlignRawSeqIDByOffset(), s_GetCountIdentityMismatch(), s_GetMostPopularPatternLength(), s_HSPOffsetBinarySearch(), s_HSPOffsetEndBinarySearch(), s_MaskSequence(), s_MergeHSPs(), s_Ncbi2naRevCmp(), s_Ncbi4naRevCmp(), s_Offset(), s_OffsetAsString(), CSequenceUpdater::s_OffsetFeature(), CSequenceUpdater::s_OffsetLocation(), s_PHIBlastAddPatternHit(), s_PrepareTrackPane(), s_RemoveCommentFromLine(), s_ReportBadCharError(), variation_ref::CVariationUtil::s_ResolveIntronicOffsets(), s_SegSeq(), s_SegsToBlastSeqLoc(), s_SeqLoc2MaskedSubjRanges(), s_Set_4na(), s_Set_4na_gap(), s_SetPointer(), CSequenceUpdater::s_Shift_CDSCodeBreaks(), CSequenceUpdater::s_Shift_tRNAAntiCodon(), s_TranslateHSPsToDNAPCoord(), s_TrimHSP(), CFixFeatureId::s_UpdateFeatureIds(), CBDB_ExtBlobMap::SBlobLoc::SBlobLoc(), CSearch_Base< LEGACY, NHITS, derived_t >::SearchInt(), CMemStore::Seek(), CBlastDbBlob::SeekRead(), CBlastDbBlob::SeekWrite(), SeqBufferSeg(), bm::sparse_vector_serializer< SV >::serialize(), CDataFrame< MAX_SIZE >::Serialize(), LinearGradient::Serialize(), rapidjson::ParseResult::Set(), compile_time_bits::bitset_traits< _Ty, _Size, u_type >::set_bits(), set_lookbehind_lengths(), CAlnMap::SetAnchor(), CBedFeatureRecord::SetBlocks(), CDemoApp::SetChoice(), CDemoApp::SetClass(), CCleanup::SetCodeBreakLocation(), CDemoApp::SetContainer(), CAliasTypeInfo::SetDataOffset(), CDemoApp::SetDispatch(), CFileIO::SetFilePos(), CPrintOptions::SetFooterOffset(), CPrintOptions::SetHeaderOffset(), pythonpp::CTuple::SetItem(), pythonpp::CList::SetItem(), pythonpp::CTuple::SetItemFast(), pythonpp::CList::SetItemFast(), CBDB_BlobMetaContainer::SetLoc(), CVariation_ref::SetMNP(), CGlRenderBuffer< T >::SetOffset(), CConvertFeatureBase::SetOffset(), CUTTPReader::SetOffset(), CDiffOperation::SetOffset(), CGraphRanges::SetOffset(), rapidjson::GenericReader< SourceEncoding, TargetEncoding, StackAllocator >::SetParseError(), CDemoApp::SetPointer(), CSeqVector_CI::SetPos(), CChoiceTypeInfo::SetSelectorInfo(), CMemberInfo::SetSetFlag(), CBandAligner::SetShift(), CVariation_ref::SetSNV(), SetupQueries_OMF(), CUrl::SetUrl(), CAlignMap::ShrinkToRealPointsOnEdited(), sljit_emit_enter(), sljit_emit_mem(), sljit_generate_code(), sljit_get_local_base(), SpAddToIndexBlk(), SPFeatGeneRef(), SPFeatProtRef(), SPGetPEValue(), SplitMultiValQual(), SplitQueryBlk_AddContextOffsetToChunk(), CBDB_ExtBlobStore< TBV >::StoreBlob(), CVDBValueFor4Bits::substr(), CVDBValueFor2Bits::substr(), sx_Find_4na_Ambiguity(), sx_FindFirstNonZeroByte(), sx_Get_4na(), tail_call_reg_arg_with_args(), tail_call_with_args(), tds5_bcp_add_fixed_columns(), tds5_bcp_add_variable_columns(), tds5_bulk_insert_column(), tds5_get_col_data_or_dflt(), tds5_send_non_blobs(), tds5_send_record(), tds7_send_record(), tds_bcp_add_fixed_columns(), tds_bcp_add_variable_columns(), tds_bcp_send_record(), CSingleCDSExceptionPanel::TransferDataFromWindow(), TranslateCDSCommand(), CSeqTranslator::TranslateToProtein(), COffsetData_Factory::Truncate(), COffsetList::TruncateList(), CKMDataNode::TryToGetData(), CPileUpGraph::UpdateAlignStats(), CGraphStatCollector_Graph::UpdateGroup(), compile_time_bits::const_set_map_base< _Traits, void, tag_DuplicatesNo >::upper_bound(), CDense_seg::Validate(), CDemoApp::WalkChoice(), CDemoApp::WalkClass(), CDemoApp::WalkContainer(), CDemoApp::WalkPointer(), CDemoApp::WalkPrimitive(), CWriteDB_ColumnIndex::WriteBlobIndex(), CBlastDbBlob::WriteInt1(), CBlastDbBlob::WriteInt1_LE(), CBlastDbBlob::WriteInt2(), CBlastDbBlob::WriteInt2_LE(), CBlastDbBlob::WriteInt4(), CBlastDbBlob::WriteInt4_LE(), CBlastDbBlob::WriteInt8(), CBlastDbBlob::WriteInt8_LE(), CBlastDbBlob::WriteRaw(), CBlastDbBlob::WriteString(), CBlastDbBlob::WriteVarInt(), variation_ref::CHgvsParser::x_abs_pos(), variation::CHgvsParser::x_abs_pos(), CPhrap_Contig::x_AddAlignRanges(), CAmbigDataBuilder::x_AddAmbig(), CSGAnnotJob::x_AddGraphToMap(), CMultiAligner::x_AddRpsFreqsToCluster(), CAdjustForConsensusSpliceSite::x_AdjustCDS3End(), CAdjustForConsensusSpliceSite::x_AdjustCDS5End(), CFeatGlyph::x_AdjustFrame(), CPhyloTreePS::x_ApplyNeighborCellForces(), CPhyloTreePS::x_ApplyRepulsiveForces(), CPhyloTreePS::x_ApplyRepulsiveForcesHashed(), CPrimeCacheApplication::x_CacheSeqEntry(), CSGAlignStatJob::x_CollectAlignStats(), CWriteDB_TaxID::x_CommitTransaction(), CBDB_BufferManager::x_ComputePackOpt(), CNaSeqlocHelper::x_ComputeSiteIndex(), CSeqConvert_imp::x_Convert4naTo2na(), CWriteDB_OidList::x_CreateBitMap(), CFeatureGenerator::SImplementation::x_CreateCdsFeature(), CImportFeatTable::x_CreateCommand(), CSGFeatureJob::x_CreateCrossOriginGlyphs(), CAlnMixMerger::x_CreateDenseg(), CSGFeatureJob::x_CreateFeature1(), CHgvsNaIrepReader::x_CreateNaIdentityVarref(), CFeatureGenerator::SImplementation::x_CreateNcRnaFeature(), CWriteDB_LMDB::x_CreateOidToSeqidsLookupFile(), CWriteDB_TaxID::x_CreateOidToTaxIdsLookupFile(), CPageHandler::x_CreatePageXForm(), CHgvsNaIrepReader::x_CreateSubstVarref(), CWriteDB_TaxID::x_CreateTaxIdToOidsLookupFile(), CImportFeatTable::x_DoImportCDS(), CAdjustFeaturesForGaps::x_DoOne(), CLDBlockGlyph::x_Draw(), CCdsGlyph::x_Draw(), CFeatGlyph::x_DrawRuler(), x_ExpandRange(), CAdjustForConsensusSpliceSite::x_ExtendStartOfExon(), CAdjustForConsensusSpliceSite::x_ExtendStopOfExon(), CPrimeCacheApplication::x_ExtractAndIndex(), compile_time_bits::const_bitset< static_cast< size_t >(eTestNames::max_test_names), eTestNames >::const_iterator::x_find_next_bit(), CSingleFeatValidator::x_FindStartOfGap(), CDensegGraphicDataSource::x_GetAlnStringFromCigar(), CReportEntry::x_GetCCoordinate(), CFastaOstreamEx::x_GetCodeBreak(), CSequenceSearchJob::x_GetMatches(), CFeatTrim::x_GetNewFrame(), CMMapByteSourceReader::x_GetNextChunkAt(), CGuiObjectInfoSeq_feat::x_GetProtOffset(), CFeatGlyph::x_GetProtOffset(), CTableDataValidate::x_GetRowData(), CFeatTrim::x_GetStartOffset(), CEditObjectSeq_feat::x_HandleCdsProduct(), CSequenceUpdater::x_ImportCDSProduct(), CFileLock::x_Init(), CConn_FTPDownloadStream::x_InitDownload(), CConn_FTPUploadStream::x_InitUpload(), CSingleFeatValidator::x_IsMostlyNs(), CValidError_bioseq::x_IsRangeGap(), CSeqDBIsam::x_LoadIndex(), CMultiAligner::x_MakeClusterResidueFrequencies(), CFeatureGenerator::SImplementation::x_MapFeature(), CRegexp::x_Match(), CMultiAligner::x_MultiAlignClusters(), CSeqMap_CI::x_Next(), CFeatureTableReader_Imp::x_ParseFeatureTableLine(), CAlignedFeatureGraph::x_PlaceCluster(), CSeqTextDataSource::x_PopulateFeatureIterators(), CPrimeCacheApplication::x_Process_Fasta(), CPrimeCacheApplication::x_Process_Ids(), CBDB_ExtBlobStore< TBV >::x_ReadCache(), CSeqDBExtFile::x_ReadSwapped(), IPhyloTreeRender::x_RenderCircularVbo(), CSeqTextPane::x_RenderCodons(), CLayoutTrack::x_RenderIcon(), CAlnVecRow::x_RenderIconExpand(), CAlnVecRow::x_RenderIcons(), CAlnMultiPane::x_RenderProgressPanel(), CLayoutTrack::x_RenderTitleBar(), CString_constraint::x_ReplaceContains(), CSequenceUpdater::x_RetranslateImportedCDSProduct(), CBlastKmer::x_SearchMultipleQueries(), CMemStore::x_SeekCURR(), CMemStore::x_SeekHEAD(), CMemStore::x_SeekTAIL(), variation_ref::CHgvsParser::x_SeqPntToStr(), CSeqDictionary< Alphabet >::x_SetIndex(), CCDSTranslationPanel::x_SetProtein(), CDeflineGenerator::x_SetTitleFromProtein(), CDeflineGenerator::x_SetTitleFromProteinIdx(), variation::CVariationUtil::x_SetVariantPropertiesForIntronic(), variation_ref::CVariationUtil::x_SetVariantPropertiesForIntronic(), CAdjustForConsensusSpliceSite::x_ShiftExonPairBackward(), CAdjustForConsensusSpliceSite::x_ShiftExonPairForward(), CGuiObjectInfoSeq_feat::x_ToProduct(), CAdjustForConsensusSpliceSite::x_TrimStartOfExon(), CAdjustForConsensusSpliceSite::x_TrimStopOfExon(), CFeatTrim::x_UpdateFrame(), CRawSeqToDeltaSeqByLoc::x_UpdateRows(), CValidError_graph::x_ValidateGraphOnDeltaBioseq(), xFindWordBoundary(), CGff2Reader::xGetStartsOnMinusStrand(), CGff2Reader::xGetStartsOnPlusStrand(), XMLGetDescr(), XMLGetDescrComment(), CFeatTableEdit::xNextProteinId(), CFeatTableEdit::xNextTranscriptId(), CMultiReaderApp::xPostProcessAnnot(), CAlnFormatGuesser::xSampleIsSequin(), CBedGraphWriter::xWriteSingleGraphByte(), CBedGraphWriter::xWriteSingleGraphInt(), and CBedGraphWriter::xWriteSingleGraphReal().
Include dependency graph for replacements.h:
