NCBI C++ ToolKit
Macros | Functions
gff_reader.cpp File Reference
#include <ncbi_pch.hpp>
#include "gff_reader.hpp"
#include <corelib/ncbitime.hpp>
#include <corelib/ncbiutil.hpp>
#include <corelib/stream_utils.hpp>
#include <serial/iterator.hpp>
#include <objects/general/Date.hpp>
#include <objects/general/Object_id.hpp>
#include <objects/seq/Seq_annot.hpp>
#include <objects/seq/Seq_descr.hpp>
#include <objects/seq/Seq_inst.hpp>
#include <objects/seq/Seqdesc.hpp>
#include <objects/seqalign/Dense_seg.hpp>
#include <objects/seqalign/Score.hpp>
#include <objects/seqalign/Std_seg.hpp>
#include <objects/seqfeat/Feat_id.hpp>
#include <objects/seqfeat/Cdregion.hpp>
#include <objects/seqfeat/SeqFeatXref.hpp>
#include <objects/seqfeat/Gb_qual.hpp>
#include <objects/seqloc/Seq_interval.hpp>
#include <objects/seqloc/Seq_point.hpp>
#include <objects/seqset/Bioseq_set.hpp>
#include <objtools/readers/cigar.hpp>
#include <objtools/readers/fasta.hpp>
#include <objtools/readers/readfeat.hpp>
#include <objtools/error_codes.hpp>
#include <algorithm>
#include <ctype.h>
+ Include dependency graph for gff_reader.cpp:

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Macros

#define NCBI_USE_ERRCODE_X   Objtools_Rd_GFF
 

Functions

static CRef< CFeat_ids_StringToFeatId (const string &str)
 
static strings_URLDecode (const CTempString &s, string &out)
 

Macro Definition Documentation

◆ NCBI_USE_ERRCODE_X

#define NCBI_USE_ERRCODE_X   Objtools_Rd_GFF

Definition at line 68 of file gff_reader.cpp.

Function Documentation

◆ s_StringToFeatId()

static CRef<CFeat_id> s_StringToFeatId ( const string str)
static

Definition at line 74 of file gff_reader.cpp.

References CFeat_id_Base::SetLocal(), CObject_id_Base::SetStr(), and str().

Referenced by CGFFReader::x_ParseFeatRecord().

◆ s_URLDecode()

static string& s_URLDecode ( const CTempString s,
string out 
)
static
Modified on Wed May 22 11:31:36 2024 by modify_doxy.py rev. 669887