#include <ncbi_pch.hpp>
#include <sra/readers/sra/graphread.hpp>
#include <sra/readers/ncbi_traces_path.hpp>
#include <corelib/ncbistr.hpp>
#include <corelib/ncbi_param.hpp>
#include <objects/general/general__.hpp>
#include <objects/seq/seq__.hpp>
#include <objects/seqset/seqset__.hpp>
#include <objects/seqloc/seqloc__.hpp>
#include <objects/seqalign/seqalign__.hpp>
#include <objects/seqres/seqres__.hpp>
#include <objects/seqtable/seqtable__.hpp>
#include <serial/objistrasnb.hpp>
#include <serial/serial.hpp>
#include <sra/error_codes.hpp>
#include <sra/readers/sra/kdbread.hpp>

Include dependency graph for graphread.cpp:

Go to the SVN repository for this file.

Macros
#define	NCBI_USE_ERRCODE_X VDBGraphReader

Functions
	NCBI_DEFINE_ERR_SUBCODE_X (1)

	BEGIN_NAMESPACE (objects)

	NCBI_PARAM_DECL (bool, VDBGRAPH, USE_VDB_INDEX)

	NCBI_PARAM_DEF_EX (bool, VDBGRAPH, USE_VDB_INDEX, true, eParam_NoThread, VDBGRAPH_USE_VDB_INDEX)

template<class DstVector , class SrcVector >
static void	sx_Assign (DstVector &dst, const SrcVector &src)

	END_NAMESPACE (objects)

Variables
	BEGIN_NCBI_NAMESPACE

	END_NCBI_NAMESPACE

Macro Definition Documentation

◆ NCBI_USE_ERRCODE_X

#define NCBI_USE_ERRCODE_X VDBGraphReader

Definition at line 53 of file graphread.cpp.

Function Documentation

◆ BEGIN_NAMESPACE()

BEGIN_NAMESPACE ( objects )

◆ END_NAMESPACE()

END_NAMESPACE ( objects )

◆ NCBI_DEFINE_ERR_SUBCODE_X()

NCBI_DEFINE_ERR_SUBCODE_X ( 1 )

◆ NCBI_PARAM_DECL()

NCBI_PARAM_DECL	(	bool	,
		VDBGRAPH	,
		USE_VDB_INDEX
	)

◆ NCBI_PARAM_DEF_EX()

NCBI_PARAM_DEF_EX	(	bool	,
		VDBGRAPH	,
		USE_VDB_INDEX	,
		true	,
		eParam_NoThread	,
		VDBGRAPH_USE_VDB_INDEX
	)

◆ sx_Assign()

template<class DstVector , class SrcVector >

static void sx_Assign	(	DstVector &	dst,
		const SrcVector &	src
	)

static

Definition at line 363 of file graphread.cpp.

References ITERATE.

Referenced by CVDBGraphSeqIterator::x_MakeGraph().

Variable Documentation

◆ BEGIN_NCBI_NAMESPACE

BEGIN_NCBI_NAMESPACE

Definition at line 51 of file graphread.cpp.

◆ END_NCBI_NAMESPACE

END_NCBI_NAMESPACE

Definition at line 875 of file graphread.cpp.

Macros

Functions

Variables