Application Framework

Collaboration diagram for Application Framework:

Classes
class	ncbi::CNcbiToolkit_LogMessage
	Logging message. More...
class	ncbi::INcbiToolkit_LogHandler
	Logging interface. More...
class	CAppException
	CAppException –. More...
class	CNcbiApplicationGuard
class	CNcbiApplicationAPI
	CNcbiApplicationAPI –. More...
class	INcbiIdler
	Interface for application idler. More...
class	CDefaultIdler
	Default idler. More...
class	pair_base_member< Base, Member >
	Template used for empty base class optimization. More...
class	CBoolEnum< TEnum >
	Template used to replace bool type arguments with some strict equivalent. More...
struct	Creater< X >
	Functor template for allocating object. More...
struct	Deleter< X >
	Functor template for deleting object. More...
struct	ArrayDeleter< X >
	Functor template for deleting array of objects. More...
struct	CDeleter< X >
	Functor template for the C language deallocation function, free(). More...
class	AutoPtr< X, Del >
	AutoPtr –. More...
struct	AutoPtr< X, Del >::SSafeBoolTag
	Bool operator for use in if() clause. More...
class	AutoArray< X, Del >
	AutoArray –. More...
struct	AutoArray< X, Del >::SSafeBoolTag
	Bool operator for use in if() clause. More...
struct	SThrowOnNull< TValue >
class	CNullable< TValue, TNullToValue >
	Template class allowing to store a value or null (unassigned) state. More...
class	CStrictId< TKey, TStorage >
	Template class for strict ID types. More...
struct	SStrictId_Gi
	Key structs must always be defined - they are used in aliasinfo.cpp. More...
struct	SStrictId_Entrez
struct	SStrictId_Tax
class	CConstIdChecker< TId, id >
	a helper template to enforce constness of argument to GI_CONST macro More...
class	CRawPointer
	Helper address class. More...
class	CFastBuffer< KEmbeddedSize, TType >
class	CSafeFlags< Enum >
	Support for safe enum flags. More...
struct	CSafeFlags< Enum >::SSafeBoolTag
class	CNcbiActionGuard
	CNcbiActionGuard class Executes registered callbacks on request or on destruction. More...
class	CNcbiActionGuard::CAction_Base
class	CNcbiActionGuard::CAction< TFunc >
struct	hash< ncbi::CStrictId< TKey, TStorage > >
class	IPhoneHomePolicy
	Interface class for Phone Home Policy. More...

Macros
#define	NCBI_TOOLKIT_EXPORT
#define	CNcbiApplication   CNcbiApplicationAPI
#define	NCBI_ESWITCH_DEFINED
#define	NCBI_EOWNERSHIP_DEFINED
	NCBI_ESWITCH_DEFINED. More...
#define	DECLARE_SAFE_BOOL_METHOD(Expr)
	Support for safe bool operators. More...
#define	DECLARE_OPERATOR_BOOL(Expr)    DECLARE_SAFE_BOOL_METHOD(Expr)
	Declaration of safe bool operator from boolean expression. More...
#define	DECLARE_OPERATOR_BOOL_PTR(Ptr)    DECLARE_OPERATOR_BOOL((Ptr) != 0)
	Declaration of safe bool operator from pointer expression. More...
#define	DECLARE_OPERATOR_BOOL_REF(Ref)    DECLARE_OPERATOR_BOOL((Ref).NotNull())
	Declaration of safe bool operator from CRef<>/CConstRef<> expression. More...
#define	OVERRIDE_OPERATOR_BOOL(TAncestorClass, NewBoolExpr)
	Override the DECLARE_OPERATOR_BOOL, etc. More...
#define	ITERATE_CONST(Cont)   NCBI_NS_NCBI::s_ITERATE_ConstRef(Cont)
#define	ITERATE_BEGIN(Cont, Begin)
#define	ITERATE_VAR(Type)   Type
#define	ITERATE(Type, Var, Cont)
	ITERATE macro to sequence through container elements. More...
#define	NON_CONST_ITERATE(Type, Var, Cont)
	Non constant version of ITERATE macro. More...
#define	REVERSE_ITERATE(Type, Var, Cont)
	ITERATE macro to reverse sequence through container elements. More...
#define	NON_CONST_REVERSE_ITERATE(Type, Var, Cont)
	Non constant version of REVERSE_ITERATE macro. More...
#define	ERASE_ITERATE(Type, Var, Cont)
	Non-constant version with ability to erase current element, if container permits. More...
#define	VECTOR_ERASE(Var, Cont)   (NCBI_NAME2(Var,_next) = (Cont).erase(Var))
	Use this macro inside body of ERASE_ITERATE cycle to erase from vector-like container. More...
#define	ITERATE_BOTH_BOOL_VALUES(BoolVar)    for( bool BoolVar##BOTH_BOOL_VALUES_DONE##__LINE__ = false, BoolVar = false; ! BoolVar##BOTH_BOOL_VALUES_DONE##__LINE__ ; BoolVar##BOTH_BOOL_VALUES_DONE##__LINE__ = BoolVar, BoolVar = true )
	The body of the loop will be run with Var equal to false and then true. More...
#define	ITERATE_0_IDX(idx, up_to)    for( TSeqPos idx = 0; idx < up_to; ++idx )
	idx loops from 0 (inclusive) to up_to (exclusive) More...
#define	ITERATE_SIMPLE(num_iters)    ITERATE_0_IDX( _dummy_idx_94768308_##__LINE__, num_iters )
	Just repeat the body of the loop num_iters times. More...
#define	NCBI_INT8_GI
	Type for sequence GI. More...
#define	STRICT_ID_TO(TId, TInt, id)   (static_cast<TInt>((id).Get()))
	Macros to convert TGi to other types (int, unsigned etc.). More...
#define	STRICT_ID_FROM(TIdType, TIntType, id)   (TIdType(static_cast<TIdType::TId>(id)))
#define	STRICT_ID_CONST(type, id)    (type(static_cast<type::TId>(ncbi::CConstIdChecker<type::TId, id>::value)))
#define	STRICT_ID_ZERO(type)   STRICT_ID_CONST(type, 0)
#define	STRICT_ID_INVALID(type)   STRICT_ID_CONST(type, -1)
#define	GI_TO(T, gi)   STRICT_ID_TO(ncbi::TGi, T, gi)
#define	GI_FROM(T, value)   STRICT_ID_FROM(ncbi::TGi, T, value)
#define	GI_CONST(gi)   STRICT_ID_CONST(ncbi::TGi, gi)
#define	ZERO_GI   STRICT_ID_ZERO(ncbi::TGi)
#define	INVALID_GI   STRICT_ID_INVALID(ncbi::TGi)
#define	ENTREZ_ID_TO(T, entrez_id)   (static_cast<T>(entrez_id))
#define	ENTREZ_ID_FROM(T, value)   (static_cast<ncbi::TEntrezId>(value))
#define	ENTREZ_ID_CONST(id)   id
#define	ZERO_ENTREZ_ID   ENTREZ_ID_CONST(0)
#define	INVALID_ENTREZ_ID   ENTREZ_ID_CONST(-1)
#define	TAX_ID_TO(T, tax_id)   (static_cast<T>(tax_id))
#define	TAX_ID_FROM(T, value)   (static_cast<ncbi::TTaxId>(value))
#define	TAX_ID_CONST(id)   id
#define	ZERO_TAX_ID   TAX_ID_CONST(0)
#define	INVALID_TAX_ID   TAX_ID_CONST(-1)
#define	INT_ID_TO(T, id)   (static_cast<T>(id))
	Convert gi-compatible int to/from other types. More...
#define	INT_ID_FROM(T, value)   (static_cast<ncbi::TIntId>(value))
#define	NCBI_DEPRECATED_CTOR(decl)   decl NCBI_DEPRECATED
	Macro used to mark a constructor as deprecated. More...
#define	NCBI_DEPRECATED_CLASS   NCBI_DEPRECATED_CTOR(class)
	Macro used to mark a class as deprecated. More...
#define	DECLARE_SAFE_FLAGS_TYPE(E, T)    typedef NCBI_NS_NCBI::CSafeFlags<E> T
	Macro DECLARE_SAFE_FLAGS_TYPE defines a typedef for safe-flags. More...
#define	DECLARE_SAFE_FLAGS(E)
	Macro DECLARE_SAFE_FLAGS marks a enum as safe-flags enum. More...

Typedefs
typedef char	ncbi::TNcbiToolkit_XChar
typedef CNcbiApplication *(*	ncbi::FNcbiApplicationFactory) (void)
	Provide means of creating custom CNcbiApplication object – to use the latter instead of "dummy" NCBI application. More...
typedef int	CNcbiApplicationAPI::TDisableArgDesc
	Binary OR of "EDisableArgDesc". More...
typedef int	CNcbiApplicationAPI::THideStdArgs
	Binary OR of "EHideStdArgs". More...
typedef int	CNcbiApplicationAPI::TStdioSetupFlags
	Binary OR of "EStdioSetup". More...
typedef int	CNcbiApplicationAPI::TAppFlags
typedef enum ENcbiSwitch	ESwitch
	Aux. More...
typedef enum ENcbiOwnership	EOwnership
	Ownership relations between objects. More...
typedef Base	pair_base_member< Base, Member >::base_type
typedef Base	pair_base_member< Base, Member >::first_type
typedef Member	pair_base_member< Base, Member >::member_type
typedef Member	pair_base_member< Base, Member >::second_type
typedef X	AutoPtr< X, Del >::element_type
	Define element type. More...
typedef Del	AutoPtr< X, Del >::deleter_type
	Alias for template argument. More...
typedef void(SSafeBoolTag::*	AutoPtr< X, Del >::TBoolType) (SSafeBoolTag *)
typedef X	AutoArray< X, Del >::element_type
	Define element type. More...
typedef Del	AutoArray< X, Del >::deleter_type
	Alias for template argument. More...
typedef void(SSafeBoolTag::*	AutoArray< X, Del >::TBoolType) (SSafeBoolTag *)
typedef unsigned int	TSeqPos
	Type for sequence locations and lengths. More...
typedef int	TSignedSeqPos
	Type for signed sequence position. More...
typedef TStorage	CStrictId< TKey, TStorage >::TId
typedef CStrictId< TKey, TStorage >	CStrictId< TKey, TStorage >::TThis
typedef Int8	TIntId
typedef Uint8	TUintId
typedef TIntId	SStrictId_Gi::TId
typedef TIntId	SStrictId_Entrez::TId
typedef int	SStrictId_Tax::TId
typedef CStrictId< SStrictId_Gi, SStrictId_Gi::TId >	TGi
typedef TGi	CStrictGi
typedef SStrictId_Entrez::TId	TEntrezId
	TEntrezId type for entrez ids which require the same strictness as TGi. More...
typedef SStrictId_Tax::TId	TTaxId
	Taxon id type. More...
typedef Enum	CSafeFlags< Enum >::enum_type
typedef underlying_type< enum_type >::type	CSafeFlags< Enum >::storage_type
typedef void(SSafeBoolTag::*	CSafeFlags< Enum >::TBoolType) (SSafeBoolTag *)
typedef list< unique_ptr< CAction_Base > >	CNcbiActionGuard::TActions

Enumerations
enum	ncbi::CNcbiToolkit_LogMessage::ESeverity {   ncbi::CNcbiToolkit_LogMessage::eInfo = 0 , ncbi::CNcbiToolkit_LogMessage::eWarning , ncbi::CNcbiToolkit_LogMessage::eError , ncbi::CNcbiToolkit_LogMessage::eCritical ,   ncbi::CNcbiToolkit_LogMessage::eFatal , ncbi::CNcbiToolkit_LogMessage::eTrace }
	Log message severity. More...
enum	CAppException::EErrCode {   CAppException::eUnsetArgs , CAppException::eSetupDiag , CAppException::eLoadConfig , CAppException::eSecond ,   CAppException::eNoRegistry }
	Error types that an application can generate. More...
enum	CNcbiApplicationAPI::EAppNameType { CNcbiApplicationAPI::eBaseName , CNcbiApplicationAPI::eFullName , CNcbiApplicationAPI::eRealName }
enum	CNcbiApplicationAPI::EPreparseArgs { CNcbiApplicationAPI::ePreparse_Continue , CNcbiApplicationAPI::ePreparse_Exit }
	Result of PreparseArgs() More...
enum	CNcbiApplicationAPI::EDisableArgDesc { CNcbiApplicationAPI::fDisableStdArgs = 0x01 }
	Disable argument descriptions. More...
enum	CNcbiApplicationAPI::EHideStdArgs {   CNcbiApplicationAPI::fHideLogfile = CArgDescriptions::fHideLogfile , CNcbiApplicationAPI::fHideConffile = CArgDescriptions::fHideConffile , CNcbiApplicationAPI::fHideVersion = CArgDescriptions::fHideVersion , CNcbiApplicationAPI::fHideFullVersion = CArgDescriptions::fHideFullVersion ,   CNcbiApplicationAPI::fHideDryRun = CArgDescriptions::fHideDryRun , CNcbiApplicationAPI::fHideHelp = CArgDescriptions::fHideHelp , CNcbiApplicationAPI::fHideFullHelp = CArgDescriptions::fHideFullHelp , CNcbiApplicationAPI::fHideXmlHelp = CArgDescriptions::fHideXmlHelp ,   CNcbiApplicationAPI::fHideAll = CArgDescriptions::fHideAll }
	Which standard flag's descriptions should not be displayed in the usage message. More...
enum	CNcbiApplicationAPI::EStdioSetup {   CNcbiApplicationAPI::fNoSyncWithStdio = 0x01 , CNcbiApplicationAPI::fDefault_CinBufferSize = 0x02 , CNcbiApplicationAPI::fBinaryCin = 0x04 , CNcbiApplicationAPI::fBinaryCout = 0x08 ,   CNcbiApplicationAPI::fDefault_SyncWithStdio = 0x00 }
	Flags to adjust standard I/O streams' behaviour. More...
enum	CNcbiApplicationAPI::EExitMode { CNcbiApplicationAPI::eNoExits , CNcbiApplicationAPI::eExceptionalExits , CNcbiApplicationAPI::eAllExits }
	When to return a user-set exit code. More...
enum	CNcbiApplicationAPI::EAppFlags { CNcbiApplicationAPI::fSkipSafeStaticDestroy = 1 << 0 }
enum	ENcbiSwitch {   eOff = 0 , eOn , eDefault , eOff = 0 ,   eOn , eDefault }
	Aux. More...
enum	ENcbiOwnership { eNoOwnership , eTakeOwnership , eNoOwnership , eTakeOwnership }
	Ownership relations between objects. More...
enum	ENullable { eNullable , eNotNullable }
	Whether a value is nullable. More...
enum	ESign { eNegative = -1 , eZero = 0 , ePositive = 1 }
	Signedness of a value. More...
enum	ETriState { eTriState_Unknown = -1 , eTriState_False = 0 , eTriState_True = 1 }
	Enumeration to represent a tristate value. More...
enum	ERound { eTrunc , eRound }
	Whether to truncate/round a value. More...
enum	EFollowLinks { eIgnoreLinks , eFollowLinks }
	Whether to follow symbolic links (also known as shortcuts or aliases) More...
enum	ENormalizePath { eNormalizePath , eNotNormalizePath }
	Whether to normalize a path. More...
enum	EInterruptOnSignal { eInterruptOnSignal , eRestartOnSignal }
	Interrupt on signal mode. More...
enum	ERetriable { eRetriable_No , eRetriable_Unknown , eRetriable_Yes }
	Can the action be retried? More...
enum	ENull { null = 0 }
	CNullable –. More...
enum	: TId { CConstIdChecker< TId, id >::value = id }

Functions
void	ncbi::NcbiToolkit_RegisterNcbiApplicationFactory (FNcbiApplicationFactory f)
void	ncbi::NcbiToolkit_Init (int argc, const TNcbiToolkit_XChar *const *argv, const TNcbiToolkit_XChar *const *envp=NULL, INcbiToolkit_LogHandler *log_handler=NULL)
	Initialialize NCBI C++ Toolkit internal infrastructure: arguments, environment, diagnostics, logging. More...
void	ncbi::NcbiToolkit_Fini (void)
	Release resources allocated for NCBI C++ Toolkit. More...
	ncbi::CNcbiToolkit_LogMessage::operator std::string (void) const
	Get the message the way it is formatted by the Toolkit. More...
std::string	ncbi::CNcbiToolkit_LogMessage::Message (void) const
	Get text part of the message. More...
ESeverity	ncbi::CNcbiToolkit_LogMessage::Severity (void) const
	Get message severity. More...
int	ncbi::CNcbiToolkit_LogMessage::ErrCode (void) const
	Get error code. More...
int	ncbi::CNcbiToolkit_LogMessage::ErrSubCode (void) const
	Get error subcode. More...
std::string	ncbi::CNcbiToolkit_LogMessage::File (void) const
	Get file name in which message was originated. More...
size_t	ncbi::CNcbiToolkit_LogMessage::Line (void) const
	Get line number in which message was originated. More...
const SDiagMessage &	ncbi::CNcbiToolkit_LogMessage::GetNativeToolkitMessage (void) const
	Get all of the message's data – as provided natively by the Toolkit. More...
	ncbi::CNcbiToolkit_LogMessage::CNcbiToolkit_LogMessage (const SDiagMessage &msg)
virtual	ncbi::CNcbiToolkit_LogMessage::~CNcbiToolkit_LogMessage (void)
	ncbi::CNcbiToolkit_LogMessage::CNcbiToolkit_LogMessage (const CNcbiToolkit_LogMessage &)
CNcbiToolkit_LogMessage &	ncbi::CNcbiToolkit_LogMessage::operator= (const CNcbiToolkit_LogMessage &)
virtual	ncbi::INcbiToolkit_LogHandler::~INcbiToolkit_LogHandler ()
virtual void	ncbi::INcbiToolkit_LogHandler::Post (const CNcbiToolkit_LogMessage &msg)=0
virtual const char *	CAppException::GetErrCodeString (void) const override
	Translate from the error code value to its string representation. More...
	CAppException::NCBI_EXCEPTION_DEFAULT (CAppException, CCoreException)
	CNcbiApplicationGuard::~CNcbiApplicationGuard (void)
CNcbiApplicationAPI *	CNcbiApplicationGuard::Get (void)
const CNcbiApplicationAPI *	CNcbiApplicationGuard::Get (void) const
CNcbiApplicationAPI *	CNcbiApplicationGuard::operator-> (void)
CNcbiApplicationAPI &	CNcbiApplicationGuard::operator* (void)
	CNcbiApplicationGuard::operator bool (void) const
bool	CNcbiApplicationGuard::operator! (void) const
	CNcbiApplicationGuard::CNcbiApplicationGuard (CNcbiApplicationAPI *app)
static CNcbiApplicationAPI *	CNcbiApplicationAPI::Instance (void)
	Singleton method. More...
static CNcbiApplicationGuard	CNcbiApplicationAPI::InstanceGuard (void)
	Singleton method. More...
static SSystemMutex &	CNcbiApplicationAPI::GetInstanceMutex (void)
	Mutex for application singleton object. More...
	CNcbiApplicationAPI::CNcbiApplicationAPI (const SBuildInfo &build_info)
	Constructor. More...
virtual	CNcbiApplicationAPI::~CNcbiApplicationAPI (void)
	Destructor. More...
int	CNcbiApplicationAPI::AppMain (int argc, const char *const *argv, const char *const *envp=0, EAppDiagStream diag=eDS_Default, const char *conf=NcbiEmptyCStr, const string &name=NcbiEmptyString)
	Main function (entry point) for the NCBI application. More...
virtual void	CNcbiApplicationAPI::Init (void)
	Initialize the application. More...
virtual int	CNcbiApplicationAPI::Run (void)=0
	Run the application. More...
virtual int	CNcbiApplicationAPI::DryRun (void)
	Test run the application. More...
virtual void	CNcbiApplicationAPI::Exit (void)
	Cleanup on application exit. More...
const CNcbiArguments &	CNcbiApplicationAPI::GetArguments (void) const
	Get the application's cached unprocessed command-line arguments. More...
virtual const CArgs &	CNcbiApplicationAPI::GetArgs (void) const
	Get parsed command line arguments. More...
const CNcbiEnvironment &	CNcbiApplicationAPI::GetEnvironment (void) const
	Get the application's cached environment. More...
CNcbiEnvironment &	CNcbiApplicationAPI::SetEnvironment (void)
	Get a non-const copy of the application's cached environment. More...
void	CNcbiApplicationAPI::SetEnvironment (const string &name, const string &value)
	Set a specified environment variable by name. More...
bool	CNcbiApplicationAPI::HasLoadedConfig (void) const
	Check if the config file has been loaded. More...
bool	CNcbiApplicationAPI::FinishedLoadingConfig (void) const
	Check if the application has finished loading config file (successfully or not). More...
const CNcbiRegistry &	CNcbiApplicationAPI::GetConfig (void) const
	Get the application's cached configuration parameters (read-only). More...
CNcbiRegistry &	CNcbiApplicationAPI::GetConfig (void)
const string &	CNcbiApplicationAPI::GetConfigPath (void) const
	Get the full path to the configuration file (if any) we ended up using. More...
bool	CNcbiApplicationAPI::ReloadConfig (CMetaRegistry::TFlags flags=CMetaRegistry::fReloadIfChanged, IRegistry::TFlags reg_flags=IRegistry::fWithNcbirc)
	Reload the configuration file. More...
SIZE_TYPE	CNcbiApplicationAPI::FlushDiag (CNcbiOstream *os, bool close_diag=false)
	Flush the in-memory diagnostic stream (for "eDS_ToMemory" case only). More...
const string &	CNcbiApplicationAPI::GetProgramDisplayName (void) const
	Get the application's "display" name. More...
const string &	CNcbiApplicationAPI::GetProgramExecutablePath (EFollowLinks follow_links=eIgnoreLinks) const
	Get the application's executable path. More...
static string	CNcbiApplicationAPI::GetAppName (EAppNameType name_type=eBaseName, int argc=0, const char *const *argv=NULL)
CVersionInfo	CNcbiApplicationAPI::GetVersion (void) const
	Get the program version information. More...
const CVersionAPI &	CNcbiApplicationAPI::GetFullVersion (void) const
	Get the program version information. More...
bool	CNcbiApplicationAPI::IsDryRun (void) const
	Check if it is a test run. More...
virtual bool	CNcbiApplicationAPI::SetupDiag_AppSpecific (void)
	Setup application specific diagnostic stream. More...
template<class TFunc >
void	CNcbiApplicationAPI::AddOnExitAction (TFunc func)
	Add callback to be executed from CNcbiApplicationAPI destructor. More...
static CRWLock &	CNcbiApplicationAPI::GetInstanceLock (void)
virtual EPreparseArgs	CNcbiApplicationAPI::PreparseArgs (int argc, const char *const *argv)
	Check the command line arguments before parsing them. More...
void	CNcbiApplicationAPI::DisableArgDescriptions (TDisableArgDesc disable=fDisableStdArgs)
void	CNcbiApplicationAPI::HideStdArgs (THideStdArgs hide_mask)
	Set the hide mask for the Hide Std Flags. More...
void	CNcbiApplicationAPI::SetStdioFlags (TStdioSetupFlags stdio_flags)
	Adjust the behavior of standard I/O streams. More...
void	CNcbiApplicationAPI::SetVersion (const CVersionInfo &version)
	Set the version number for the program. More...
void	CNcbiApplicationAPI::SetVersion (const CVersionInfo &version, const SBuildInfo &build_info)
void	CNcbiApplicationAPI::SetVersionByBuild (int major)
void	CNcbiApplicationAPI::SetFullVersion (CRef< CVersionAPI > version)
	Set version data for the program. More...
virtual void	CNcbiApplicationAPI::SetupArgDescriptions (CArgDescriptions *arg_desc)
	Setup the command line argument descriptions. More...
const CArgDescriptions *	CNcbiApplicationAPI::GetArgDescriptions (void) const
	Get argument descriptions (set by SetupArgDescriptions) More...
bool	CNcbiApplicationAPI::SetupDiag (EAppDiagStream diag)
	Setup the application diagnostic stream. More...
virtual bool	CNcbiApplicationAPI::LoadConfig (CNcbiRegistry &reg, const string *conf, CNcbiRegistry::TFlags reg_flags)
	Load settings from the configuration file to the registry. More...
virtual bool	CNcbiApplicationAPI::LoadConfig (CNcbiRegistry &reg, const string *conf)
	Load settings from the configuration file to the registry. More...
CNcbiRegistry &	CNcbiApplicationAPI::GetRWConfig (void)
	Get the application's cached configuration parameters, accessible for read-write for an application's internal use only. More...
void	CNcbiApplicationAPI::SetProgramDisplayName (const string &app_name)
	Set program's display name. More...
static string	CNcbiApplicationAPI::FindProgramExecutablePath (int argc, const char *const *argv, string *real_path=0)
	Find the application's executable file. More...
virtual void	CNcbiApplicationAPI::AppStart (void)
	Method to be called before application start. More...
virtual void	CNcbiApplicationAPI::AppStop (int exit_code)
	Method to be called before application exit. More...
void	CNcbiApplicationAPI::SetExitCode (int exit_code, EExitMode when=eExceptionalExits)
	Force the program to return a specific exit code later, either when it exits due to an exception or unconditionally. More...
void	CNcbiApplicationAPI::SetAppFlags (TAppFlags flags)
void	CNcbiApplicationAPI::ExecuteOnExitActions ()
	Should only be called from the destructors of classes derived from CNcbiApplicationAPI - if it is necessary to access their data members and virtual methods; or to dynamic_cast<> from the base app class. More...
void	CNcbiApplicationAPI::SetPhoneHomePolicy (IPhoneHomePolicy *policy, ENcbiOwnership ownership=eNoOwnership)
	Set Phone Home Policy. More...
IPhoneHomePolicy *	CNcbiApplicationAPI::GetPhoneHomePolicy () const
	Return pointer to current Phone Home Policy or NULL. More...
void	CNcbiApplicationAPI::x_HonorStandardSettings (IRegistry *reg=0)
	Read standard NCBI application configuration settings. More...
void	CNcbiApplicationAPI::x_ReadLogOptions ()
	Read switches that are stored in m_LogOptions from registry and environment. More...
void	CNcbiApplicationAPI::x_LogOptions (int event)
	Log environment, registry, command arguments, path. More...
void	CNcbiApplicationAPI::x_SetupStdio (void)
	Setup C++ standard I/O streams' behaviour. More...
void	CNcbiApplicationAPI::x_AddDefaultArgs (void)
void	CNcbiApplicationAPI::x_TryInit (EAppDiagStream diag, const char *conf)
void	CNcbiApplicationAPI::x_TryMain (EAppDiagStream diag, const char *conf, int *exit_code, bool *got_exception)
virtual	INcbiIdler::~INcbiIdler (void)
virtual void	INcbiIdler::Idle (void)=0
	CDefaultIdler::CDefaultIdler (void)
virtual	CDefaultIdler::~CDefaultIdler (void)
virtual void	CDefaultIdler::Idle (void)
INcbiIdler *	GetIdler (EOwnership ownership=eNoOwnership)
	Return currently installed idler or NULL. More...
void	SetIdler (INcbiIdler *idler, EOwnership ownership=eTakeOwnership)
	Set new idler and ownership. More...
void	RunIdler (void)
	Execute currently installed idler if any. More...
	pair_base_member< Base, Member >::pair_base_member (void)
	pair_base_member< Base, Member >::pair_base_member (const member_type &member_value)
	pair_base_member< Base, Member >::pair_base_member (const first_type &first_value, const second_type &second_value)
const first_type &	pair_base_member< Base, Member >::first () const
first_type &	pair_base_member< Base, Member >::first ()
const second_type &	pair_base_member< Base, Member >::second () const
second_type &	pair_base_member< Base, Member >::second ()
void	pair_base_member< Base, Member >::Swap (pair_base_member< first_type, second_type > &p)
	CBoolEnum< TEnum >::CBoolEnum (bool value)
	CBoolEnum< TEnum >::CBoolEnum (TEnum value)
	CBoolEnum< TEnum >::operator bool () const
	Operator bool. More...
	CBoolEnum< TEnum >::operator TEnum () const
	Operator enum. More...
	CBoolEnum< TEnum >::CBoolEnum (char *)
	CBoolEnum< TEnum >::CBoolEnum (int)
	CBoolEnum< TEnum >::CBoolEnum (unsigned int)
template<class T >
	CBoolEnum< TEnum >::CBoolEnum (T)
	CBoolEnum< TEnum >::operator int () const
	CBoolEnum< TEnum >::operator unsigned int () const
static X *	Creater< X >::Create (void)
	Default create function. More...
static void	Deleter< X >::Delete (X *object)
	Default delete function. More...
static void	ArrayDeleter< X >::Delete (X *object)
	Array delete function. More...
static void	CDeleter< X >::Delete (X *object)
	C Language deallocation function. More...
	AutoPtr< X, Del >::AutoPtr (element_type *p=0)
	Constructor. More...
	AutoPtr< X, Del >::AutoPtr (element_type *p, const deleter_type &deleter)
	Constructor. More...
	AutoPtr< X, Del >::AutoPtr (element_type *p, EOwnership ownership)
	Constructor, own the pointed object if ownership == eTakeOwnership. More...
	AutoPtr< X, Del >::AutoPtr (element_type *p, const deleter_type &deleter, EOwnership ownership)
	Constructor, own the pointed object if ownership == eTakeOwnership. More...
	AutoPtr< X, Del >::AutoPtr (const AutoPtr< X, Del > &p)
	Copy constructor. More...
	AutoPtr< X, Del >::~AutoPtr (void)
	Destructor. More...
AutoPtr< X, Del > &	AutoPtr< X, Del >::operator= (const AutoPtr< X, Del > &p)
	Assignment operator. More...
AutoPtr< X, Del > &	AutoPtr< X, Del >::operator= (element_type *p)
	Assignment operator. More...
void	AutoPtr< X, Del >::SSafeBoolTag::SafeBoolTrue (SSafeBoolTag *)
	AutoPtr< X, Del >::operator TBoolType () const
bool	AutoPtr< X, Del >::operator== (TBoolType) const
bool	AutoPtr< X, Del >::operator!= (TBoolType) const
element_type &	AutoPtr< X, Del >::operator* (void) const
	Dereference operator. More...
element_type *	AutoPtr< X, Del >::operator-> (void) const
	Reference operator. More...
element_type *	AutoPtr< X, Del >::get (void) const
	Get pointer. More...
element_type *	AutoPtr< X, Del >::release (void)
	Release will release ownership of pointer to caller. More...
void	AutoPtr< X, Del >::reset (element_type *p=0, EOwnership ownership=eTakeOwnership)
	Reset will delete the old pointer (if owned), set content to the new value, and assume the ownership upon the new pointer by default. More...
void	AutoPtr< X, Del >::Swap (AutoPtr< X, Del > &a)
bool	AutoPtr< X, Del >::IsOwned (void) const
element_type *	AutoPtr< X, Del >::x_Release (void) const
	Release for const object. More...
	AutoArray< X, Del >::AutoArray (size_t size)
	Construct the array using C++ new[] operator. More...
	AutoArray< X, Del >::AutoArray (element_type *p=0)
	AutoArray< X, Del >::AutoArray (element_type *p, const deleter_type &deleter)
	AutoArray< X, Del >::AutoArray (const AutoArray< X, Del > &p)
	AutoArray< X, Del >::~AutoArray (void)
AutoArray< X, Del > &	AutoArray< X, Del >::operator= (const AutoArray< X, Del > &p)
	Assignment operator. More...
AutoArray< X, Del > &	AutoArray< X, Del >::operator= (element_type *p)
	Assignment operator. More...
void	AutoArray< X, Del >::SSafeBoolTag::SafeBoolTrue (SSafeBoolTag *)
	AutoArray< X, Del >::operator TBoolType () const
bool	AutoArray< X, Del >::operator== (TBoolType) const
bool	AutoArray< X, Del >::operator!= (TBoolType) const
element_type *	AutoArray< X, Del >::get (void) const
	Get pointer. More...
element_type *	AutoArray< X, Del >::release (void)
	Release will release ownership of pointer to caller. More...
const element_type &	AutoArray< X, Del >::operator[] (size_t pos) const
	Array style dereference (returns value) More...
element_type &	AutoArray< X, Del >::operator[] (size_t pos)
	Array style dereference (returns reference) More...
void	AutoArray< X, Del >::reset (element_type *p=0)
	Reset will delete the old pointer, set content to the new value, and assume the ownership upon the new pointer. More...
void	AutoArray< X, Del >::Swap (AutoPtr< X, Del > &a)
element_type *	AutoArray< X, Del >::x_Release (void) const
	Release for const object. More...
NCBI_XNCBI_EXPORT void	g_ThrowOnNull (void)
TValue	SThrowOnNull< TValue >::operator() (void) const
	CNullable< TValue, TNullToValue >::CNullable (ENull=null)
	Create an empty nullable. More...
	CNullable< TValue, TNullToValue >::CNullable (TValue value)
	Initialize nullable with a specific value. More...
bool	CNullable< TValue, TNullToValue >::IsNull (void) const
	Check if the object is unassigned. More...
	CNullable< TValue, TNullToValue >::operator TValue (void) const
	Get nullable value. More...
const TValue &	CNullable< TValue, TNullToValue >::GetValue (void) const
	Get a const reference to the current value. More...
TValue &	CNullable< TValue, TNullToValue >::SetValue (void)
	Get a non-const reference to the value. More...
CNullable &	CNullable< TValue, TNullToValue >::operator= (TValue value)
	Assign a value to the nullable. More...
CNullable &	CNullable< TValue, TNullToValue >::operator= (ENull)
	Reset nullable to unassigned state. More...
template<class TValue , class TNullToValue = SThrowOnNull<TValue>>
bool	operator== (const CNullable< TValue, TNullToValue > &l, const CNullable< TValue, TNullToValue > &r)
template<class TValue , class TNullToValue = SThrowOnNull<TValue>>
bool	operator!= (const CNullable< TValue, TNullToValue > &l, const CNullable< TValue, TNullToValue > &r)
char *	strdup (const char *str)
	Supply string duplicate function, if one is not defined. More...
template<typename Type >
const Type &	s_ITERATE_ConstRef (const Type &obj)
template<typename Type >
bool	s_ITERATE_SameObject (const Type &obj1, const Type &obj2)
	CStrictId< TKey, TStorage >::CStrictId (void)
	CStrictId< TKey, TStorage >::CStrictId (const TThis &other)
TThis &	CStrictId< TKey, TStorage >::operator= (const TThis &other)
bool	CStrictId< TKey, TStorage >::operator== (const TThis &id) const
bool	CStrictId< TKey, TStorage >::operator!= (const TThis &id) const
bool	CStrictId< TKey, TStorage >::operator< (const TThis &id) const
bool	CStrictId< TKey, TStorage >::operator<= (const TThis &id) const
bool	CStrictId< TKey, TStorage >::operator> (const TThis &id) const
bool	CStrictId< TKey, TStorage >::operator>= (const TThis &id) const
TThis &	CStrictId< TKey, TStorage >::operator++ (void)
TThis	CStrictId< TKey, TStorage >::operator++ (int)
TThis &	CStrictId< TKey, TStorage >::operator-- (void)
TThis	CStrictId< TKey, TStorage >::operator-- (int)
TThis	CStrictId< TKey, TStorage >::operator+ (const TThis &id) const
TThis	CStrictId< TKey, TStorage >::operator- (const TThis &id) const
TThis	CStrictId< TKey, TStorage >::operator- (void) const
TId	CStrictId< TKey, TStorage >::Get (void) const
void	CStrictId< TKey, TStorage >::Set (TId id)
TId &	CStrictId< TKey, TStorage >::Set (void)
template<typename T >
	CStrictId< TKey, TStorage >::CStrictId (T id, typename enable_if< is_same< T, TId >::value, T >::type=0)
template<class TKey , class TStorage >
CNcbiOstream &	operator<< (CNcbiOstream &out, const CStrictId< TKey, TStorage > &id)
template<class TKey , class TStorage >
CNcbiIstream &	operator>> (CNcbiIstream &in, CStrictId< TKey, TStorage > &id)
static void *	CRawPointer::Add (void *object, ssize_t offset)
	add offset to object reference (to get object's member) More...
static const void *	CRawPointer::Add (const void *object, ssize_t offset)
static ssize_t	CRawPointer::Sub (const void *first, const void *second)
	calculate offset inside object More...
	CFastBuffer< KEmbeddedSize, TType >::CFastBuffer (size_t buf_size)
	CFastBuffer< KEmbeddedSize, TType >::~CFastBuffer ()
TType	CFastBuffer< KEmbeddedSize, TType >::operator[] (size_t pos) const
TType &	CFastBuffer< KEmbeddedSize, TType >::operator* (void)
const TType &	CFastBuffer< KEmbeddedSize, TType >::operator* (void) const
TType *	CFastBuffer< KEmbeddedSize, TType >::operator+ (size_t offset)
const TType *	CFastBuffer< KEmbeddedSize, TType >::operator+ (size_t offset) const
TType *	CFastBuffer< KEmbeddedSize, TType >::begin (void)
const TType *	CFastBuffer< KEmbeddedSize, TType >::begin (void) const
TType *	CFastBuffer< KEmbeddedSize, TType >::end (void)
const TType *	CFastBuffer< KEmbeddedSize, TType >::end (void) const
size_t	CFastBuffer< KEmbeddedSize, TType >::size (void) const
	CSafeFlags< Enum >::CSafeFlags ()
	CSafeFlags< Enum >::CSafeFlags (storage_type flags)
	CSafeFlags< Enum >::CSafeFlags (enum_type flags)
storage_type	CSafeFlags< Enum >::get () const
void	CSafeFlags< Enum >::SSafeBoolTag::SafeBoolTrue (SSafeBoolTag *)
	CSafeFlags< Enum >::operator TBoolType () const
bool	CSafeFlags< Enum >::operator== (TBoolType) const
bool	CSafeFlags< Enum >::operator!= (TBoolType) const
bool	CSafeFlags< Enum >::operator== (const CSafeFlags &b) const
bool	CSafeFlags< Enum >::operator!= (const CSafeFlags &b) const
bool	CSafeFlags< Enum >::operator== (int v) const
bool	CSafeFlags< Enum >::operator!= (int v) const
CSafeFlags	CSafeFlags< Enum >::operator~ () const
CSafeFlags	CSafeFlags< Enum >::operator& (const CSafeFlags &b) const
CSafeFlags &	CSafeFlags< Enum >::operator&= (const CSafeFlags &b)
CSafeFlags	CSafeFlags< Enum >::operator| (const CSafeFlags &b) const
CSafeFlags &	CSafeFlags< Enum >::operator|= (const CSafeFlags &b)
CSafeFlags	CSafeFlags< Enum >::operator^ (const CSafeFlags &b) const
CSafeFlags &	CSafeFlags< Enum >::operator^= (const CSafeFlags &b)
template<class E >
CSafeFlags< E >	operator| (E a, CSafeFlags< E > b)
	Helper operators for safe-flags enums. More...
template<class E >
CSafeFlags< E >	operator& (E a, CSafeFlags< E > b)
template<class E >
CSafeFlags< E >	operator^ (E a, CSafeFlags< E > b)
template<class E >
ostream &	operator<< (ostream &out, const CSafeFlags< E > &v)
	CNcbiActionGuard::CNcbiActionGuard (void)
virtual	CNcbiActionGuard::~CNcbiActionGuard (void)
template<class TFunc >
void	CNcbiActionGuard::AddAction (TFunc func)
void	CNcbiActionGuard::ExecuteActions (void)
	CNcbiActionGuard::CNcbiActionGuard (const CNcbiActionGuard &)
CNcbiActionGuard &	CNcbiActionGuard::operator= (const CNcbiActionGuard &)
	CNcbiActionGuard::CAction_Base::CAction_Base (void)
virtual	CNcbiActionGuard::CAction_Base::~CAction_Base ()
virtual void	CNcbiActionGuard::CAction_Base::Execute (void) const =0
	CNcbiActionGuard::CAction_Base::CAction_Base (const CAction_Base &)
CAction_Base &	CNcbiActionGuard::CAction_Base::operator= (const CAction_Base &)
	CNcbiActionGuard::CAction< TFunc >::CAction (TFunc func)
virtual	CNcbiActionGuard::CAction< TFunc >::~CAction (void)
void	CNcbiActionGuard::CAction< TFunc >::Execute (void) const override
template<class T1 , class T2 >
void	swap (NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair1, NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair2)
template<class P , class D >
void	swap (NCBI_NS_NCBI::AutoPtr< P, D > &ptr1, NCBI_NS_NCBI::AutoPtr< P, D > &ptr2)
template<class Element , size_t Size>
constexpr size_t	ArraySize (const Element(&)[Size])
size_t	hash< ncbi::CStrictId< TKey, TStorage > >::operator() (const ncbi::CStrictId< TKey, TStorage > &x) const
	IPhoneHomePolicy::IPhoneHomePolicy ()
	Constructor. More...
virtual	IPhoneHomePolicy::~IPhoneHomePolicy ()
	Destructor. More...
virtual void	IPhoneHomePolicy::Apply (CNcbiApplicationAPI *app)=0
	Apply policy for an application. More...
virtual void	IPhoneHomePolicy::Print ()=0
	Print a message about collecting data, disablig tracking and privacy policies. More...
virtual void	IPhoneHomePolicy::Save ()=0
	Save policy configuration. More...
virtual void	IPhoneHomePolicy::Restore ()=0
	Restore policy configuration. More...
virtual void	IPhoneHomePolicy::Init ()
	Initialize policy/reporting API. More...
virtual void	IPhoneHomePolicy::Finish ()
	Deinitialize policy/reporting API. More...
virtual bool	IPhoneHomePolicy::IsEnabled () const
	Return current policy status (enabbed/disabled). More...
virtual void	IPhoneHomePolicy::SetEnabled (bool enabled=true)
	Set policy status (enabbed/disabled). More...

Variables
const SDiagMessage &	ncbi::CNcbiToolkit_LogMessage::m_Msg
CNcbiApplicationAPI *	CNcbiApplicationGuard::m_App
shared_ptr< CReadLockGuard >	CNcbiApplicationGuard::m_AppLock
static CNcbiApplicationAPI *	CNcbiApplicationAPI::m_Instance = nullptr
	Current app. instance. More...
CRef< CVersionAPI >	CNcbiApplicationAPI::m_Version
	Program version. More...
unique_ptr< CNcbiEnvironment >	CNcbiApplicationAPI::m_Environ
	Cached application env. More...
CRef< CNcbiRegistry >	CNcbiApplicationAPI::m_Config
	Guaranteed to be non-NULL. More...
unique_ptr< CNcbiOstream >	CNcbiApplicationAPI::m_DiagStream
	Opt., aux., see eDS_ToMemory. More...
unique_ptr< CNcbiArguments >	CNcbiApplicationAPI::m_Arguments
	Command-line arguments. More...
unique_ptr< CArgDescriptions >	CNcbiApplicationAPI::m_ArgDesc
	Cmd.-line arg descriptions. More...
unique_ptr< CArgs >	CNcbiApplicationAPI::m_Args
	Parsed cmd.-line args. More...
TDisableArgDesc	CNcbiApplicationAPI::m_DisableArgDesc
	Arg desc. disabled. More...
THideStdArgs	CNcbiApplicationAPI::m_HideArgs
	Std cmd.-line flags to hide. More...
TStdioSetupFlags	CNcbiApplicationAPI::m_StdioFlags
	Std C++ I/O adjustments. More...
char *	CNcbiApplicationAPI::m_CinBuffer
	Cin buffer if changed. More...
string	CNcbiApplicationAPI::m_ProgramDisplayName
	Display name of app. More...
string	CNcbiApplicationAPI::m_ExePath
	Program executable path. More...
string	CNcbiApplicationAPI::m_RealExePath
	Symlink-free executable path. More...
string	CNcbiApplicationAPI::m_LogFileName
	Log file name. More...
string	CNcbiApplicationAPI::m_ConfigPath
	Path to .ini file used. More...
int	CNcbiApplicationAPI::m_ExitCode
	Exit code to force. More...
EExitMode	CNcbiApplicationAPI::m_ExitCodeCond
	When to force it (if ever) More...
bool	CNcbiApplicationAPI::m_DryRun
	Dry run. More...
string	CNcbiApplicationAPI::m_DefaultConfig
	conf parameter to AppMain More...
bool	CNcbiApplicationAPI::m_ConfigLoaded
	Finished loading config. More...
const char *	CNcbiApplicationAPI::m_LogFile
	Logfile if set in the command line. More...
int	CNcbiApplicationAPI::m_LogOptions
	logging of env, reg, args, path More...
CNcbiActionGuard	CNcbiApplicationAPI::m_OnExitActions
	Actions executed on app destruction. More...
IPhoneHomePolicy *	CNcbiApplicationAPI::m_PhoneHomePolicy
	Pointer to active Phone Home Policy, if any. More...
ENcbiOwnership	CNcbiApplicationAPI::m_PhoneHomePolicy_Ownership
	Phone Home Policy ownersheep. More...
TAppFlags	CNcbiApplicationAPI::m_AppFlags = 0
	BEGIN_NCBI_NAMESPACE
	NCBI_EOWNERSHIP_DEFINED. More...
member_type	pair_base_member< Base, Member >::m_Member
bool	CBoolEnum< TEnum >::m_Value
element_type *	AutoPtr< X, Del >::m_Ptr
	Internal pointer representation. More...
pair_base_member< deleter_type, bool >	AutoPtr< X, Del >::m_Data
	State info. More...
element_type *	AutoArray< X, Del >::m_Ptr
pair_base_member< deleter_type, bool >	AutoArray< X, Del >::m_Data
	State info. More...
bool	CNullable< TValue, TNullToValue >::m_IsNull
TValue	CNullable< TValue, TNullToValue >::m_Value
const TSeqPos	kInvalidSeqPos = ((TSeqPos) (-1))
	Define special value for invalid sequence position. More...
TId	CStrictId< TKey, TStorage >::m_Id
size_t	CFastBuffer< KEmbeddedSize, TType >::m_Size
TType *	CFastBuffer< KEmbeddedSize, TType >::m_Buffer
TType	CFastBuffer< KEmbeddedSize, TType >::m_EmbeddedBuffer [KEmbeddedSize]
storage_type	CSafeFlags< Enum >::m_Flags
TFunc	CNcbiActionGuard::CAction< TFunc >::m_Func
TActions	CNcbiActionGuard::m_Actions
	END_NCBI_NAMESPACE
	BEGIN_STD_NAMESPACE
	END_STD_NAMESPACE
bool	IPhoneHomePolicy::m_IsEnabled
	Enable/disable tracking status. More...

Friends
class	CNcbiApplicationGuard::CNcbiApplicationAPI
class	CNcbiApplicationAPI::CNcbiApplicationGuard
struct	AutoPtr< X, Del >::SSafeBoolTag
struct	AutoArray< X, Del >::SSafeBoolTag
struct	CSafeFlags< Enum >::SSafeBoolTag
template<class T >
using	c_unique_ptr = unique_ptr< T, void(*)(T *)>
	Template helpers for unique_ptr to work with resource allocating/deallocating C functions. More...
template<class T , typename TDeleter >
unique_ptr< T, TDeleter >	make_c_unique (T *p, TDeleter d)
	Eliminates the necessity for specifying types of both allocated resource and deallocating C function. More...
template<class T >
unique_ptr< T, void(*)(void *)>	make_c_unique (T *p)
	Overload for the above for all types of allocated memory that are to be deallocated by free() More...
#define	NCBI_EXPORT_FUNC_DECLARE(lib, func)
#define	NCBI_EXPORT_FUNC_DEFINE(lib, func)

Detailed Description

Macro Definition Documentation

CNcbiApplication

#define CNcbiApplication   CNcbiApplicationAPI

Definition at line 831 of file ncbiapp_api.hpp.

DECLARE_OPERATOR_BOOL

#define DECLARE_OPERATOR_BOOL

(

Expr

)

DECLARE_SAFE_BOOL_METHOD(Expr)

Declaration of safe bool operator from boolean expression.

Actual operator declaration will be: operator TBoolType(void) const; where TBoolType is a typedef convertible to bool (member pointer).

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 199 of file ncbimisc.hpp.

DECLARE_OPERATOR_BOOL_PTR

#define DECLARE_OPERATOR_BOOL_PTR

(

Ptr

)

DECLARE_OPERATOR_BOOL((Ptr) != 0)

Declaration of safe bool operator from pointer expression.

Actual operator declaration will be: operator bool(void) const;

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 206 of file ncbimisc.hpp.

DECLARE_OPERATOR_BOOL_REF

#define DECLARE_OPERATOR_BOOL_REF

(

Ref

)

DECLARE_OPERATOR_BOOL((Ref).NotNull())

Declaration of safe bool operator from CRef<>/CConstRef<> expression.

Actual operator declaration will be: operator bool(void) const;

Definition at line 213 of file ncbimisc.hpp.

DECLARE_SAFE_BOOL_METHOD

#define DECLARE_SAFE_BOOL_METHOD

(

Expr

)

Value:

    struct SSafeBoolTag {                                               \
        void SafeBoolTrue(SSafeBoolTag*) {}                             \
    };                                                                  \
    typedef void (SSafeBoolTag::*TBoolType)(SSafeBoolTag*);             \
    operator TBoolType() const {                                        \
        return (Expr)? &SSafeBoolTag::SafeBoolTrue: 0;                  \
    }                                                                   \
    private:                                                            \
    bool operator==(TBoolType) const;                                   \
    bool operator!=(TBoolType) const;                                   \
    public:                                                             \
    friend struct SSafeBoolTag

Support for safe bool operators.

Low level macro for declaring safe bool operator.

Definition at line 180 of file ncbimisc.hpp.

DECLARE_SAFE_FLAGS

#define DECLARE_SAFE_FLAGS

(

E

)

Value:

inline NCBI_NS_NCBI::CSafeFlags<E> operator|(E a, E b) \
{ return NCBI_NS_NCBI::CSafeFlags<E>(a) | b; }         \
inline NCBI_NS_NCBI::CSafeFlags<E> operator&(E a, E b) \
{ return NCBI_NS_NCBI::CSafeFlags<E>(a) & b; }         \
inline NCBI_NS_NCBI::CSafeFlags<E> operator^(E a, E b) \
{ return NCBI_NS_NCBI::CSafeFlags<E>(a) ^ b; }         \
inline NCBI_NS_NCBI::CSafeFlags<E> operator~(E a)      \
{ return ~NCBI_NS_NCBI::CSafeFlags<E>(a); }

Macro DECLARE_SAFE_FLAGS marks a enum as safe-flags enum.

The argument is the enum name. If the enum is defined inside a class then DECLARE_SAFE_FLAGS() must be placed outside the class definition: DECLARE_SAFE_FLAGS(CMyClass::EFlags);

Definition at line 1346 of file ncbimisc.hpp.

DECLARE_SAFE_FLAGS_TYPE

#define DECLARE_SAFE_FLAGS_TYPE	(		E,
			T
	)		typedef NCBI_NS_NCBI::CSafeFlags<E> T

Macro DECLARE_SAFE_FLAGS_TYPE defines a typedef for safe-flags.

First argument is enum name, second argument is the new typedef name. In place of old typedef: typedef int TFlags; put new macro: DECLARE_SAFE_FLAGS_TYPE(EFlags, TFlags);

Definition at line 1338 of file ncbimisc.hpp.

ENTREZ_ID_CONST

#define ENTREZ_ID_CONST

(

id

)

id

Definition at line 1099 of file ncbimisc.hpp.

ENTREZ_ID_FROM

#define ENTREZ_ID_FROM	(		T,
			value
	)		(static_cast<ncbi::TEntrezId>(value))

Definition at line 1098 of file ncbimisc.hpp.

ENTREZ_ID_TO

#define ENTREZ_ID_TO	(		T,
			entrez_id
	)		(static_cast<T>(entrez_id))

Definition at line 1097 of file ncbimisc.hpp.

ERASE_ITERATE

#define ERASE_ITERATE	(		Type,
			Var,
			Cont
	)

Value:

    for ( ITERATE_VAR(Type::iterator) Var = ITERATE_BEGIN(Cont, begin), \
              NCBI_NAME2(Var,_next) = Var;                              \
          (Var = NCBI_NAME2(Var,_next)) != (Cont).end() &&              \
              (++NCBI_NAME2(Var,_next), true); )

Non-constant version with ability to erase current element, if container permits.

Use only on containers, for which erase do not ruin other iterators into the container, e.g. map, list, but NOT vector. See also VECTOR_ERASE

Definition at line 843 of file ncbimisc.hpp.

GI_CONST

#define GI_CONST

(

gi

)

STRICT_ID_CONST(ncbi::TGi, gi)

Definition at line 1087 of file ncbimisc.hpp.

GI_FROM

#define GI_FROM	(		T,
			value
	)		STRICT_ID_FROM(ncbi::TGi, T, value)

Definition at line 1086 of file ncbimisc.hpp.

GI_TO

#define GI_TO	(		T,
			gi
	)		STRICT_ID_TO(ncbi::TGi, T, gi)

Definition at line 1085 of file ncbimisc.hpp.

INT_ID_FROM

#define INT_ID_FROM	(		T,
			value
	)		(static_cast<ncbi::TIntId>(value))

Definition at line 1121 of file ncbimisc.hpp.

INT_ID_TO

#define INT_ID_TO	(		T,
			id
	)		(static_cast<T>(id))

Convert gi-compatible int to/from other types.

Definition at line 1120 of file ncbimisc.hpp.

INVALID_ENTREZ_ID

#define INVALID_ENTREZ_ID   ENTREZ_ID_CONST(-1)

Definition at line 1103 of file ncbimisc.hpp.

INVALID_GI

#define INVALID_GI   STRICT_ID_INVALID(ncbi::TGi)

Definition at line 1089 of file ncbimisc.hpp.

INVALID_TAX_ID

#define INVALID_TAX_ID   TAX_ID_CONST(-1)

Definition at line 1116 of file ncbimisc.hpp.

ITERATE

#define ITERATE	(		Type,
			Var,
			Cont
	)

Value:

    for ( ITERATE_VAR(Type::const_iterator)                             \
              Var = ITERATE_BEGIN(ITERATE_CONST(Cont), begin),          \
              NCBI_NAME2(Var,_end) = ITERATE_CONST(Cont).end();         \
          Var != NCBI_NAME2(Var,_end);  ++Var )

ITERATE macro to sequence through container elements.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp, and /home/coremake/doxygen/cxx/include/corelib/ncbistr.hpp.

Definition at line 815 of file ncbimisc.hpp.

ITERATE_0_IDX

#define ITERATE_0_IDX	(		idx,
			up_to
	)		for( TSeqPos idx = 0; idx < up_to; ++idx )

idx loops from 0 (inclusive) to up_to (exclusive)

Definition at line 865 of file ncbimisc.hpp.

ITERATE_BEGIN

#define ITERATE_BEGIN	(		Cont,
			Begin
	)

Value:

    (NCBI_ASSERT_EXPR(NCBI_NS_NCBI::s_ITERATE_SameObject(Cont, Cont),   \
                      "rvalue container in *ITERATE"), (Cont).Begin())

Definition at line 800 of file ncbimisc.hpp.

ITERATE_BOTH_BOOL_VALUES

#define ITERATE_BOTH_BOOL_VALUES

(

BoolVar

)

for( bool BoolVar##BOTH_BOOL_VALUES_DONE##__LINE__ = false, BoolVar = false; ! BoolVar##BOTH_BOOL_VALUES_DONE##__LINE__ ; BoolVar##BOTH_BOOL_VALUES_DONE##__LINE__ = BoolVar, BoolVar = true )

The body of the loop will be run with Var equal to false and then true.

The seemlingly excessive complexity of this macro is to get around a couple of limitations: * A bool only has two states, so it's not possible to represent the complete state space of (first iteration, second iteration, done) without another variable. * The variables declared in a for-loop's first part must be of the same type, so the other variable has to be a bool instead of something more convenient such as as a loop-counter.

Definition at line 861 of file ncbimisc.hpp.

ITERATE_CONST

#define ITERATE_CONST

(

Cont

)

NCBI_NS_NCBI::s_ITERATE_ConstRef(Cont)

Definition at line 791 of file ncbimisc.hpp.

ITERATE_SIMPLE

#define ITERATE_SIMPLE

(

num_iters

)

ITERATE_0_IDX( _dummy_idx_94768308_##__LINE__, num_iters )

Just repeat the body of the loop num_iters times.

Definition at line 869 of file ncbimisc.hpp.

ITERATE_VAR

#define ITERATE_VAR

(

Type

)

Type

Definition at line 811 of file ncbimisc.hpp.

NCBI_DEPRECATED_CLASS

#define NCBI_DEPRECATED_CLASS   NCBI_DEPRECATED_CTOR(class)

Macro used to mark a class as deprecated.

See also

NCBI_DEPRECATED_CTOR

Definition at line 1215 of file ncbimisc.hpp.

NCBI_DEPRECATED_CTOR

#define NCBI_DEPRECATED_CTOR

(

decl

)

decl NCBI_DEPRECATED

Macro used to mark a constructor as deprecated.

The correct syntax for this varies from compiler to compiler: older versions of GCC (prior to 3.4) require NCBI_DEPRECATED to follow any relevant constructor declarations, but some other compilers (Microsoft Visual Studio 2005, IBM Visual Age / XL) require it to precede any relevant declarations, whether or not they are for constructors.

Examples

/home/coremake/doxygen/cxx/include/util/buffer_writer.hpp, and /home/coremake/doxygen/cxx/src/objtools/data_loaders/asn_cache/buffer_writer.hpp.

Definition at line 1209 of file ncbimisc.hpp.

NCBI_EOWNERSHIP_DEFINED

#define NCBI_EOWNERSHIP_DEFINED

NCBI_ESWITCH_DEFINED.

Definition at line 82 of file ncbimisc.hpp.

NCBI_ESWITCH_DEFINED

#define NCBI_ESWITCH_DEFINED

Definition at line 56 of file ncbimisc.hpp.

NCBI_EXPORT_FUNC_DECLARE

#define NCBI_EXPORT_FUNC_DECLARE	(		lib,
			func
	)

Value:

namespace NCBI_ ## lib                                                          \
{                                                                               \
    namespace S ## func                                                         \
    {                                                                           \
        using T = decltype(func);                                               \
                                                                                \
        NCBI_ ## lib ## _EXPORT T* F();                                         \
                                                                                \
        template <class T>                                                      \
        struct S;                                                               \
                                                                                \
        template <class TR, class... TArgs>                                     \
        struct S<TR (TArgs...)>                                                 \
        {                                                                       \
            static TR Call(TArgs... args) { return F()(args...); }              \
        };                                                                      \
    }                                                                           \
                                                                                \
    constexpr auto func = S ## func::S<S ## func::T>::Call;                     \
}

Definition at line 1469 of file ncbimisc.hpp.

NCBI_EXPORT_FUNC_DEFINE

#define NCBI_EXPORT_FUNC_DEFINE	(		lib,
			func
	)

Value:

namespace NCBI_ ## lib                                                          \
{                                                                               \
    namespace S ## func                                                         \
    {                                                                           \
        T* F() { return ::func; }                                               \
    }                                                                           \
}

Definition at line 1491 of file ncbimisc.hpp.

NCBI_INT8_GI

#define NCBI_INT8_GI

Type for sequence GI.

Use this typedef rather than its expansion, which may change.

Definition at line 978 of file ncbimisc.hpp.

NCBI_TOOLKIT_EXPORT

#define NCBI_TOOLKIT_EXPORT

Definition at line 66 of file ncbi_toolkit_impl.hpp.

NON_CONST_ITERATE

#define NON_CONST_ITERATE	(		Type,
			Var,
			Cont
	)

Value:

    for ( ITERATE_VAR(Type::iterator) Var = ITERATE_BEGIN(Cont, begin); \
          Var != (Cont).end();  ++Var )

Non constant version of ITERATE macro.

Definition at line 822 of file ncbimisc.hpp.

NON_CONST_REVERSE_ITERATE

#define NON_CONST_REVERSE_ITERATE	(		Type,
			Var,
			Cont
	)

Value:

    for ( ITERATE_VAR(Type::reverse_iterator)                           \
              Var = ITERATE_BEGIN(Cont, rbegin);                        \
          Var != (Cont).rend();  ++Var )

Non constant version of REVERSE_ITERATE macro.

Definition at line 834 of file ncbimisc.hpp.

OVERRIDE_OPERATOR_BOOL

#define OVERRIDE_OPERATOR_BOOL	(		TAncestorClass,
			NewBoolExpr
	)

Value:

    using TAncestorClass::TBoolType;                                    \
    using TAncestorClass::SSafeBoolTag;                                 \
    operator TBoolType() const {                                \
        return (NewBoolExpr)? & SSafeBoolTag::SafeBoolTrue : 0;        \
    }

Override the DECLARE_OPERATOR_BOOL, etc.

from an ancestor class. This is needed because sometimes you can't just use DECLARE_OPERATOR_BOOL due to cases such as the ancestor class being privately inherited from.

Definition at line 220 of file ncbimisc.hpp.

REVERSE_ITERATE

#define REVERSE_ITERATE	(		Type,
			Var,
			Cont
	)

Value:

    for ( ITERATE_VAR(Type::const_reverse_iterator)                     \
              Var = ITERATE_BEGIN(ITERATE_CONST(Cont), rbegin),         \
              NCBI_NAME2(Var,_end) = ITERATE_CONST(Cont).rend();        \
          Var != NCBI_NAME2(Var,_end);  ++Var )

ITERATE macro to reverse sequence through container elements.

Definition at line 827 of file ncbimisc.hpp.

STRICT_ID_CONST

#define STRICT_ID_CONST	(		type,
			id
	)		(type(static_cast<type::TId>(ncbi::CConstIdChecker<type::TId, id>::value)))

Definition at line 1070 of file ncbimisc.hpp.

STRICT_ID_FROM

#define STRICT_ID_FROM	(		TIdType,
			TIntType,
			id
	)		(TIdType(static_cast<TIdType::TId>(id)))

Definition at line 1069 of file ncbimisc.hpp.

STRICT_ID_INVALID

#define STRICT_ID_INVALID

(

type

)

STRICT_ID_CONST(type, -1)

Definition at line 1073 of file ncbimisc.hpp.

STRICT_ID_TO

#define STRICT_ID_TO	(		TId,
			TInt,
			id
	)		(static_cast<TInt>((id).Get()))

Macros to convert TGi to other types (int, unsigned etc.).

Definition at line 1068 of file ncbimisc.hpp.

STRICT_ID_ZERO

#define STRICT_ID_ZERO

(

type

)

STRICT_ID_CONST(type, 0)

Definition at line 1072 of file ncbimisc.hpp.

TAX_ID_CONST

#define TAX_ID_CONST

(

id

)

id

Definition at line 1112 of file ncbimisc.hpp.

TAX_ID_FROM

#define TAX_ID_FROM	(		T,
			value
	)		(static_cast<ncbi::TTaxId>(value))

Definition at line 1111 of file ncbimisc.hpp.

TAX_ID_TO

#define TAX_ID_TO	(		T,
			tax_id
	)		(static_cast<T>(tax_id))

Definition at line 1110 of file ncbimisc.hpp.

VECTOR_ERASE

#define VECTOR_ERASE	(		Var,
			Cont
	)		(NCBI_NAME2(Var,_next) = (Cont).erase(Var))

Use this macro inside body of ERASE_ITERATE cycle to erase from vector-like container.

Plain erase() call would invalidate Var_next iterator and would make the cycle controlling code to fail.

Definition at line 852 of file ncbimisc.hpp.

ZERO_ENTREZ_ID

#define ZERO_ENTREZ_ID   ENTREZ_ID_CONST(0)

Definition at line 1102 of file ncbimisc.hpp.

ZERO_GI

#define ZERO_GI   STRICT_ID_ZERO(ncbi::TGi)

Definition at line 1088 of file ncbimisc.hpp.

ZERO_TAX_ID

#define ZERO_TAX_ID   TAX_ID_CONST(0)

Definition at line 1115 of file ncbimisc.hpp.

Typedef Documentation

base_type

template<class Base , class Member >

typedef Base pair_base_member< Base, Member >::base_type

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 248 of file ncbimisc.hpp.

c_unique_ptr

template<class T >

using c_unique_ptr = unique_ptr<T, void(*)(T*)>

Template helpers for unique_ptr to work with resource allocating/deallocating C functions.

Eliminates the necessity for specifying type of deallocating C function.

Definition at line 1444 of file ncbimisc.hpp.

CStrictGi

typedef TGi CStrictGi

Deprecated:

: Use TGi/TEntrezId typedefs.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1028 of file ncbimisc.hpp.

deleter_type [1/2]

template<class X , class Del = Deleter<X>>

typedef Del AutoPtr< X, Del >::deleter_type

Alias for template argument.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 404 of file ncbimisc.hpp.

deleter_type [2/2]

template<class X , class Del = ArrayDeleter<X>>

typedef Del AutoArray< X, Del >::deleter_type

Alias for template argument.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 530 of file ncbimisc.hpp.

element_type [1/2]

template<class X , class Del = Deleter<X>>

typedef X AutoPtr< X, Del >::element_type

Define element type.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 403 of file ncbimisc.hpp.

element_type [2/2]

template<class X , class Del = ArrayDeleter<X>>

typedef X AutoArray< X, Del >::element_type

Define element type.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 529 of file ncbimisc.hpp.

enum_type

template<class Enum >

typedef Enum CSafeFlags< Enum >::enum_type

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1252 of file ncbimisc.hpp.

EOwnership

typedef enum ENcbiOwnership EOwnership

Ownership relations between objects.

Can be used to define or transfer ownership of objects. For example, specify if a CSocket object owns its underlying SOCK object.

ESwitch

typedef enum ENcbiSwitch ESwitch

Aux.

enum to set/unset/default various features.

first_type

template<class Base , class Member >

typedef Base pair_base_member< Base, Member >::first_type

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 249 of file ncbimisc.hpp.

FNcbiApplicationFactory

typedef CNcbiApplication*(* ncbi::FNcbiApplicationFactory) (void)

Provide means of creating custom CNcbiApplication object – to use the latter instead of "dummy" NCBI application.

Note

It is an esoteric feature that is very rarely used.

Definition at line 77 of file ncbi_toolkit_impl.hpp.

member_type

template<class Base , class Member >

typedef Member pair_base_member< Base, Member >::member_type

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 250 of file ncbimisc.hpp.

second_type

template<class Base , class Member >

typedef Member pair_base_member< Base, Member >::second_type

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 251 of file ncbimisc.hpp.

storage_type

template<class Enum >

typedef underlying_type<enum_type>::type CSafeFlags< Enum >::storage_type

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1253 of file ncbimisc.hpp.

TActions

typedef list<unique_ptr<CAction_Base> > CNcbiActionGuard::TActions

private

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1435 of file ncbimisc.hpp.

TAppFlags

typedef int CNcbiApplicationAPI::TAppFlags

protected

Definition at line 619 of file ncbiapp_api.hpp.

TBoolType [1/3]

template<class X , class Del = Deleter<X>>

typedef void(SSafeBoolTag::* AutoPtr< X, Del >::TBoolType) (SSafeBoolTag *)

Definition at line 458 of file ncbimisc.hpp.

TBoolType [2/3]

template<class X , class Del = ArrayDeleter<X>>

typedef void(SSafeBoolTag::* AutoArray< X, Del >::TBoolType) (SSafeBoolTag *)

Definition at line 578 of file ncbimisc.hpp.

TBoolType [3/3]

template<class Enum >

typedef void(SSafeBoolTag::* CSafeFlags< Enum >::TBoolType) (SSafeBoolTag *)

Definition at line 1274 of file ncbimisc.hpp.

TDisableArgDesc

typedef int CNcbiApplicationAPI::TDisableArgDesc

protected

Binary OR of "EDisableArgDesc".

Definition at line 428 of file ncbiapp_api.hpp.

TEntrezId

typedef SStrictId_Entrez::TId TEntrezId

TEntrezId type for entrez ids which require the same strictness as TGi.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1041 of file ncbimisc.hpp.

TGi

typedef CStrictId<SStrictId_Gi, SStrictId_Gi::TId> TGi

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1025 of file ncbimisc.hpp.

THideStdArgs

typedef int CNcbiApplicationAPI::THideStdArgs

protected

Binary OR of "EHideStdArgs".

Definition at line 449 of file ncbiapp_api.hpp.

TId [1/4]

template<class TKey , class TStorage >

typedef TStorage CStrictId< TKey, TStorage >::TId

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 895 of file ncbimisc.hpp.

TId [2/4]

typedef TIntId SStrictId_Gi::TId

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1013 of file ncbimisc.hpp.

TId [3/4]

typedef TIntId SStrictId_Entrez::TId

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1016 of file ncbimisc.hpp.

TId [4/4]

typedef int SStrictId_Tax::TId

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1019 of file ncbimisc.hpp.

TIntId

typedef Int8 TIntId

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 999 of file ncbimisc.hpp.

TNcbiToolkit_XChar

typedef char ncbi::TNcbiToolkit_XChar

Definition at line 55 of file ncbi_toolkit_impl.hpp.

TSeqPos

typedef unsigned int TSeqPos

Type for sequence locations and lengths.

Use this typedef rather than its expansion, which may change.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 875 of file ncbimisc.hpp.

TSignedSeqPos

typedef int TSignedSeqPos

Type for signed sequence position.

Use this type when and only when negative values are a possibility for reporting differences between positions, or for error reporting – though exceptions are generally better for error reporting. Use this typedef rather than its expansion, which may change.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 887 of file ncbimisc.hpp.

TStdioSetupFlags

typedef int CNcbiApplicationAPI::TStdioSetupFlags

protected

Binary OR of "EStdioSetup".

Definition at line 467 of file ncbiapp_api.hpp.

TTaxId

typedef SStrictId_Tax::TId TTaxId

Taxon id type.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1048 of file ncbimisc.hpp.

TThis

template<class TKey , class TStorage >

typedef CStrictId<TKey, TStorage> CStrictId< TKey, TStorage >::TThis

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 896 of file ncbimisc.hpp.

TUintId

typedef Uint8 TUintId

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1000 of file ncbimisc.hpp.

Enumeration Type Documentation

anonymous enum

template<class TId , TId id>

anonymous enum : TId

Enumerator
value

Definition at line 1057 of file ncbimisc.hpp.

EAppFlags

enum CNcbiApplicationAPI::EAppFlags

protected

Enumerator
fSkipSafeStaticDestroy

Definition at line 616 of file ncbiapp_api.hpp.

EAppNameType

enum CNcbiApplicationAPI::EAppNameType

Enumerator
eBaseName	per GetProgramDisplayName
eFullName	per GetProgramExecutablePath(eIgnoreLinks)
eRealName	per GetProgramExecutablePath(eFollowLinks)

Definition at line 366 of file ncbiapp_api.hpp.

EDisableArgDesc

enum CNcbiApplicationAPI::EDisableArgDesc

protected

Disable argument descriptions.

Call with a bit flag set if you do not want std AND user cmd.line args to be parsed. Note that by default the parsing of cmd.line args are enabled.

Enumerator
fDisableStdArgs	(-logfile, -conffile, -version etc)

Definition at line 425 of file ncbiapp_api.hpp.

EErrCode

enum CAppException::EErrCode

Error types that an application can generate.

These error conditions are checked for and caught inside AppMain().

Enumerator
eUnsetArgs	Command-line argument description not found.
eSetupDiag	Application diagnostic stream setup failed.
eLoadConfig	Registry data failed to load from config file.
eSecond	Second instance of CNcbiApplicationAPI is prohibited.
eNoRegistry	Registry file cannot be opened.

Definition at line 82 of file ncbiapp_api.hpp.

EExitMode

enum CNcbiApplicationAPI::EExitMode

protected

When to return a user-set exit code.

Enumerator
eNoExits	never (stick to existing logic)
eExceptionalExits	when an (uncaught) exception occurs
eAllExits	always (ignoring Run's return value)

Definition at line 606 of file ncbiapp_api.hpp.

EFollowLinks

enum EFollowLinks

Whether to follow symbolic links (also known as shortcuts or aliases)

Enumerator
eIgnoreLinks	Do not follow symbolic links.
eFollowLinks	Follow symbolic links.

Definition at line 143 of file ncbimisc.hpp.

EHideStdArgs

enum CNcbiApplicationAPI::EHideStdArgs

protected

Which standard flag's descriptions should not be displayed in the usage message.

Do not display descriptions of the standard flags such as the -h, -logfile, -conffile, -version flags in the usage message. Note that you still can pass them in the command line.

Enumerator
fHideLogfile	Hide log file description.
fHideConffile	Hide configuration file description.
fHideVersion	Hide version description.
fHideFullVersion	Hide full version description.
fHideDryRun	Hide dryrun description.
fHideHelp	Hide help description.
fHideFullHelp	Hide full help description.
fHideXmlHelp	Hide XML help description.
fHideAll	Hide all standard argument descriptions.

Definition at line 438 of file ncbiapp_api.hpp.

EInterruptOnSignal

enum EInterruptOnSignal

Interrupt on signal mode.

On UNIX some functions can be interrupted by a signal and EINTR errno value. We can restart or cancel its execution.

Enumerator
eInterruptOnSignal	Cancel operation if interrupted by a signal.
eRestartOnSignal	Restart operation if interrupted by a signal.

Definition at line 160 of file ncbimisc.hpp.

ENcbiOwnership

enum ENcbiOwnership

Ownership relations between objects.

Can be used to define or transfer ownership of objects. For example, specify if a CSocket object owns its underlying SOCK object.

Enumerator
eNoOwnership	No ownership is assumed.
eTakeOwnership	An object can take ownership of another.
eNoOwnership
eTakeOwnership	No ownership assumed. An object can take ownership of another

Definition at line 99 of file ncbimisc.hpp.

ENcbiSwitch

enum ENcbiSwitch

Aux.

enum to set/unset/default various features.

Enumerator
eOff
eOn
eDefault
eOff
eOn
eDefault

Definition at line 70 of file ncbimisc.hpp.

ENormalizePath

enum ENormalizePath

Whether to normalize a path.

Enumerator
eNormalizePath	Normalize a path.
eNotNormalizePath	Do not normalize a path.

Definition at line 150 of file ncbimisc.hpp.

ENull

enum ENull

CNullable –.

A value whith 'unassigned' state. Define "null" pointer value.

Enumerator
null

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 645 of file ncbimisc.hpp.

ENullable

enum ENullable

Whether a value is nullable.

Enumerator
eNullable	Value can be null.
eNotNullable	Value cannot be null.

Definition at line 113 of file ncbimisc.hpp.

EPreparseArgs

enum CNcbiApplicationAPI::EPreparseArgs

protected

Result of PreparseArgs()

Enumerator
ePreparse_Continue	Continue application execution.
ePreparse_Exit	Exit the application with zero exit code.

Definition at line 410 of file ncbiapp_api.hpp.

ERetriable

enum ERetriable

Can the action be retried?

Enumerator
eRetriable_No	It makes no sense to retry the action.
eRetriable_Unknown	It is unknown if the action can succeed if retried.
eRetriable_Yes	It makes sense to try again.

Definition at line 167 of file ncbimisc.hpp.

ERound

enum ERound

Whether to truncate/round a value.

Enumerator
eTrunc	Value must be truncated.
eRound	Value must be rounded.

Definition at line 136 of file ncbimisc.hpp.

ESeverity

enum ncbi::CNcbiToolkit_LogMessage::ESeverity

Log message severity.

Enumerator
eInfo	Informational message.
eWarning	Warning message.
eError	Error message.
eCritical	Critical error message.
eFatal	Fatal error.
eTrace	Trace message.

Definition at line 102 of file ncbi_toolkit.hpp.

ESign

enum ESign

Signedness of a value.

Enumerator
eNegative	Value is negative.
eZero	Value is zero.
ePositive	Value is positive.

Definition at line 120 of file ncbimisc.hpp.

EStdioSetup

enum CNcbiApplicationAPI::EStdioSetup

protected

Flags to adjust standard I/O streams' behaviour.

Enumerator
fNoSyncWithStdio	Turn off synchronizing of "C++" cin/cout/cerr streams with their "C" counterparts, possibly making the former not thread-safe.
fDefault_CinBufferSize	Use compiler-specific default of Cin buffer size.
fBinaryCin	treat standard input as binary
fBinaryCout	treat standard output as binary
fDefault_SyncWithStdio	Deprecated: See also fNoSyncWithStdio

Definition at line 455 of file ncbiapp_api.hpp.

ETriState

enum ETriState

Enumeration to represent a tristate value.

Enumerator
eTriState_Unknown	The value is indeterminate.
eTriState_False	The value is equivalent to false/no.
eTriState_True	The value is equivalent to true/yes.

Definition at line 128 of file ncbimisc.hpp.

Function Documentation

Add() [1/2]

const void * CRawPointer::Add ( const void *  object, ssize_t  offset  )

inlinestatic

Definition at line 1143 of file ncbimisc.hpp.

References offset.

Add() [2/2]

void * CRawPointer::Add ( void *  object, ssize_t  offset  )

inlinestatic

add offset to object reference (to get object's member)

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1137 of file ncbimisc.hpp.

References offset.

Referenced by CSequenceOfTypeInfo::Data(), EndOf(), CSequenceOfTypeInfo::NextNode(), and CChoiceTypeInfo::Which().

AddAction()

template<class TFunc >

void CNcbiActionGuard::AddAction ( TFunc  func )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1392 of file ncbimisc.hpp.

References CNcbiActionGuard::m_Actions.

Referenced by CNcbiApplicationAPI::AddOnExitAction().

AddOnExitAction()

template<class TFunc >

void CNcbiApplicationAPI::AddOnExitAction ( TFunc  func )

inline

Add callback to be executed from CNcbiApplicationAPI destructor.

Note

It is executed earlier, at CNcbiApplication destructor; and, it may be executed even earlier from destructors of other CNcbiApplicationAPI-derived classes.

See also

CNcbiActionGuard, ExecuteOnExitActions()

Definition at line 400 of file ncbiapp_api.hpp.

References CNcbiActionGuard::AddAction(), and CNcbiApplicationAPI::m_OnExitActions.

Referenced by CBDB_Cache_OnAppExit::AddOnExitCallback(), and CBDB_Env_OnAppExit::AddOnExitCallback().

Apply()

virtual void IPhoneHomePolicy::Apply ( CNcbiApplicationAPI *  app )

pure virtual

Apply policy for an application.

For example, iIt can get and check program arguments, and call any other methods depending on it. Automatically called from CNcbiApplication::SetPhoneHomePolicy().

Parameters

app	Pointer to the CNcbiApplicationAPI instance.

See also

CNcbiApplication::SetPhoneHomePolicy, CNcbiApplication::GetPhoneHomePolicy

Implemented in CSamplePhoneHomePolicy.

Referenced by CNcbiApplicationAPI::SetPhoneHomePolicy().

AppMain()

int CNcbiApplicationAPI::AppMain	(	int	argc,
		const char *const *	argv,
		const char *const *	envp = 0,
		EAppDiagStream	diag = eDS_Default,
		const char *	conf = NcbiEmptyCStr,
		const string &	name = NcbiEmptyString
	)

Main function (entry point) for the NCBI application.

You can specify where to write the diagnostics to (EAppDiagStream), and where to get the configuration file (LoadConfig()) to load to the application registry (accessible via GetConfig()).

Throw exception if:

• not-only instance
• cannot load explicitly specified config.file
• SetupDiag() throws an exception

If application name is not specified a default of "ncbi" is used. Certain flags such as -logfile, -conffile and -version are special so AppMain() processes them separately.

Parameters

argc	Argument count [argc in a regular main(argc, argv)].
argv	Argument vector [argv in a regular main(argc, argv)].
envp	Environment pointer [envp in a regular main(argc, argv, envp)]; a null pointer (the default) corresponds to the standard system array (environ on most Unix platforms).
diag	Specify diagnostic stream.
conf	Specify registry to load, as per LoadConfig(). The default is an empty string, requesting automatic detection; it is also possible to pass a specific name (optionally qualified) or a NULL pointer (disabling application-specific registry lookup altogether).
name	Specify application name, used in diagnostics and automatic registry searching.

Returns

Exit code from Run(). Can also return non-zero value if application threw an exception.

See also

LoadConfig(), Init(), Run(), Exit()

Definition at line 818 of file ncbiapp.cpp.

References _TRACE, a, Abort(), ABORT_ON_THROW, CNcbiApplicationAPI::AppStop(), IRWRegistry::Clear(), Critical(), CSafeStaticGuard::Destroy(), DIAG_POST_LEVEL, DIAG_TRACE, CDiagContext::DiscardMessages(), CNcbiApplicationAPI::eAllExits, eDCM_NoChange, eDPF_Severity, eDS_User, eDT_Enable, CNcbiApplicationAPI::eExceptionalExits, CSafeStaticLifeSpan::eLifeLevel_AppMain, CArgException::eNoValue, CNcbiApplicationAPI::ePreparse_Exit, ERR_POST_X, CArgDescriptions::fDupErrToCerr, CNcbiApplicationAPI::FindProgramExecutablePath(), CArgDescriptions::fNoUsage, CVersionAPI::fPackageShort, CNcbiApplicationAPI::fSkipSafeStaticDestroy, fSuppress_Exception, CVersionAPI::fVersionInfo, GetDiagContext(), GetDiagHandler(), CException::GetErrCode(), CNcbiApplicationAPI::GetFullVersion(), CStreamDiagHandler::GetStream(), i, CDiagContext::IsSetExitCode(), CNcbiApplicationAPI::m_AppFlags, CNcbiApplicationAPI::m_ArgDesc, CNcbiApplicationAPI::m_Arguments, CNcbiApplicationAPI::m_Config, CNcbiApplicationAPI::m_DefaultConfig, CNcbiApplicationAPI::m_DisableArgDesc, CNcbiApplicationAPI::m_DryRun, CNcbiApplicationAPI::m_Environ, CNcbiApplicationAPI::m_ExePath, CNcbiApplicationAPI::m_ExitCode, CNcbiApplicationAPI::m_ExitCodeCond, CNcbiApplicationAPI::m_LogFile, CNcbiApplicationAPI::m_ProgramDisplayName, CNcbiApplicationAPI::m_RealExePath, NCBI_REPORT_EXCEPTION_X, NCBI_RETHROW, NCBI_THROW, NULL, CNcbiApplicationAPI::PreparseArgs(), CVersionAPI::Print(), CVersionAPI::PrintJson(), CVersionAPI::PrintXml(), s_ArgCfgFile, s_ArgDelimiter, s_ArgDryRun, s_ArgFullVersion, s_ArgFullVersionJson, s_ArgFullVersionXml, s_ArgLogFile, s_ArgVersion, s_HandleExceptions(), s_IsApplicationStarted, SetDiagFixedPostLevel(), SetDiagPostAllFlags(), SetDiagTrace(), CDiagContext::SetExitCode(), CNcbiApplicationAPI::SetProgramDisplayName(), SetThrowTraceAbort(), CDiagContext::SetupDiag(), CDirEntry::SplitPath(), NStr::StartsWith(), str(), NStr::strcmp(), string, CNcbiDiag::StrToSeverityLevel(), SuppressSystemMessageBox(), Warning(), CException::what(), CNcbiApplicationAPI::x_AddDefaultArgs(), CNcbiApplicationAPI::x_SetupStdio(), and CNcbiApplicationAPI::x_TryMain().

Referenced by CNcbiTestApplication::InitTestFramework(), main(), Main(), and NcbiSys_main().

AppStart()

void CNcbiApplicationAPI::AppStart ( void  )

protectedvirtual

Method to be called before application start.

Can be used to set DiagContext properties to be printed in the application start message (e.g. host|host_ip_addr, client_ip and session_id for CGI applications).

Reimplemented in CCgiApplication.

Definition at line 1738 of file ncbiapp.cpp.

References GetDiagContext(), CNcbiApplicationAPI::GetProgramExecutablePath(), CDiagContext::IsSetOldPostFormat(), CNcbiApplicationAPI::m_Arguments, CDiagContext::PrintStart(), and NStr::ShellEncode().

Referenced by CNcbiApplicationAPI::x_TryInit().

AppStop()

void CNcbiApplicationAPI::AppStop ( int  exit_code )

protectedvirtual

Method to be called before application exit.

Can be used to set DiagContext properties to be printed in the application stop message (exit_status, exit_signal, exit_code).

Reimplemented in CCgiApplication.

Definition at line 1758 of file ncbiapp.cpp.

References ctx, and GetDiagContext().

Referenced by CNcbiApplicationAPI::AppMain().

ArraySize()

template<class Element , size_t Size>

constexpr size_t ArraySize ( const   Element(&)[Size] )

inlineconstexpr

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1532 of file ncbimisc.hpp.

Referenced by AdjustSpecificHostForTaxServer(), BOOST_AUTO_TEST_CASE(), CGb_qual::CleanupAndRepairInference(), CommentHasSuspiciousHtml(), CSequenceAmbigTrimmer::CSequenceAmbigTrimmer(), CCleanup::DecodeXMLMarkChanged(), CField_type::FeatureFieldFromCDSGeneProtField(), CValidError_imp::FindEmbeddedScript(), CSubSource::FixDateFormat(), CSubSource::FixSexQualifierValue(), CAsnBinCompressed::GetJobStreamProperties(), CRna_qual::GetLegalQual(), CInferencePrefixList::GetPrefixAndRemainder(), CSeqFeatData::GetRegulatoryClass(), CRna_feat_type::GetRnaRefType(), CSNPDbFeatIterator::GetSeq_feat(), CCommentItem::GetStringForRefSeqGenome(), HasBadWord(), CGb_qual::IsIllegalQualName(), CAsnBinCompressed::IsLZOStream(), impl::CDriverContext::NofConnections(), OrderQual(), CGb_qual::ParseExperiment(), CBioSource::RemoveLineageSourceNotes(), s_AaName(), s_IsAllowedPrefix(), s_SetTrnaProduct(), CBioSource::ShouldIgnoreConflict(), CFormatGuess::TestFormatXml(), CSeq_id::WhichFastaTag(), CTL_Connection::x_LoadTextPtrProcs(), CSearch_func::x_PrecededByOkPrefix(), CSearch_func::x_SkipBracketOrParen(), and x_ValidAminoAcid().

AutoArray() [1/4]

template<class X , class Del = ArrayDeleter<X>>

AutoArray< X, Del >::AutoArray ( const AutoArray< X, Del > &  p )

inline

Definition at line 548 of file ncbimisc.hpp.

AutoArray() [2/4]

template<class X , class Del = ArrayDeleter<X>>

AutoArray< X, Del >::AutoArray ( element_type *  p, const deleter_type &  deleter  )

inline

Definition at line 544 of file ncbimisc.hpp.

AutoArray() [3/4]

template<class X , class Del = ArrayDeleter<X>>

AutoArray< X, Del >::AutoArray ( element_type *  p = 0 )

inlineexplicit

Definition at line 540 of file ncbimisc.hpp.

AutoArray() [4/4]

template<class X , class Del = ArrayDeleter<X>>

AutoArray< X, Del >::AutoArray ( size_t  size )

inlineexplicit

Construct the array using C++ new[] operator.

Note

In this case you should use ArrayDeleter<> or compatible

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 536 of file ncbimisc.hpp.

AutoPtr() [1/5]

template<class X , class Del = Deleter<X>>

AutoPtr< X, Del >::AutoPtr ( const AutoPtr< X, Del > &  p )

inline

Copy constructor.

Definition at line 427 of file ncbimisc.hpp.

AutoPtr() [2/5]

template<class X , class Del = Deleter<X>>

AutoPtr< X, Del >::AutoPtr ( element_type *  p, const deleter_type &  deleter  )

inline

Constructor.

Definition at line 412 of file ncbimisc.hpp.

AutoPtr() [3/5]

template<class X , class Del = Deleter<X>>

AutoPtr< X, Del >::AutoPtr ( element_type *  p, const deleter_type &  deleter, EOwnership  ownership  )

inline

Constructor, own the pointed object if ownership == eTakeOwnership.

Definition at line 422 of file ncbimisc.hpp.

AutoPtr() [4/5]

template<class X , class Del = Deleter<X>>

AutoPtr< X, Del >::AutoPtr ( element_type *  p, EOwnership  ownership  )

inline

Constructor, own the pointed object if ownership == eTakeOwnership.

Definition at line 417 of file ncbimisc.hpp.

AutoPtr() [5/5]

template<class X , class Del = Deleter<X>>

AutoPtr< X, Del >::AutoPtr ( element_type *  p = 0 )

inline

Constructor.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 407 of file ncbimisc.hpp.

begin() [1/2]

template<size_t KEmbeddedSize, class TType = char>

TType* CFastBuffer< KEmbeddedSize, TType >::begin ( void  )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1182 of file ncbimisc.hpp.

References CFastBuffer< KEmbeddedSize, TType >::m_Buffer.

begin() [2/2]

template<size_t KEmbeddedSize, class TType = char>

const TType* CFastBuffer< KEmbeddedSize, TType >::begin ( void  ) const

inline

Definition at line 1183 of file ncbimisc.hpp.

References CFastBuffer< KEmbeddedSize, TType >::m_Buffer.

CAction()

template<class TFunc >

CNcbiActionGuard::CAction< TFunc >::CAction ( TFunc  func )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1429 of file ncbimisc.hpp.

CAction_Base() [1/2]

CNcbiActionGuard::CAction_Base::CAction_Base ( const CAction_Base &  )

private

CAction_Base() [2/2]

CNcbiActionGuard::CAction_Base::CAction_Base ( void  )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1418 of file ncbimisc.hpp.

CBoolEnum() [1/6]

template<class TEnum >

CBoolEnum< TEnum >::CBoolEnum ( bool  value )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 313 of file ncbimisc.hpp.

CBoolEnum() [2/6]

template<class TEnum >

CBoolEnum< TEnum >::CBoolEnum ( char *  )

private

CBoolEnum() [3/6]

template<class TEnum >

CBoolEnum< TEnum >::CBoolEnum ( int  )

private

CBoolEnum() [4/6]

template<class TEnum >

template<class T >

CBoolEnum< TEnum >::CBoolEnum ( T  )

private

CBoolEnum() [5/6]

template<class TEnum >

CBoolEnum< TEnum >::CBoolEnum ( TEnum  value )

inline

Definition at line 314 of file ncbimisc.hpp.

CBoolEnum() [6/6]

template<class TEnum >

CBoolEnum< TEnum >::CBoolEnum ( unsigned int  )

private

CDefaultIdler()

CDefaultIdler::CDefaultIdler ( void  )

inline

Definition at line 727 of file ncbiapp_api.hpp.

CFastBuffer()

template<size_t KEmbeddedSize, class TType = char>

CFastBuffer< KEmbeddedSize, TType >::CFastBuffer ( size_t  buf_size )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1168 of file ncbimisc.hpp.

CNcbiActionGuard() [1/2]

CNcbiActionGuard::CNcbiActionGuard ( const CNcbiActionGuard &  )

private

CNcbiActionGuard() [2/2]

CNcbiActionGuard::CNcbiActionGuard ( void  )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1389 of file ncbimisc.hpp.

CNcbiApplicationAPI()

CNcbiApplicationAPI::CNcbiApplicationAPI ( const SBuildInfo &  build_info )

explicit

Constructor.

Register the application instance, and reset important application-specific settings to empty values that will be set later.

Definition at line 139 of file ncbiapp.cpp.

References CVersionAPI::AddComponentVersion(), Critical(), eDiagAppState_AppBegin, CNcbiApplicationAPI::eNoExits, eNoOwnership, ERR_POST_X, eSecond, GetDiagContext(), CNcbiApplicationAPI::GetInstanceLock(), CVersionAPI::GetPackageVersion(), CDiagContext::GetUID(), CVersionAPI::GetVersionInfo(), CThread::InitializeMainThreadId(), CDiagContext::InitMessages(), CVersionInfo::IsAny(), CNcbiApplicationAPI::m_Arguments, CNcbiApplicationAPI::m_CinBuffer, CNcbiApplicationAPI::m_Config, CNcbiApplicationAPI::m_DisableArgDesc, CNcbiApplicationAPI::m_DryRun, CNcbiApplicationAPI::m_Environ, CNcbiApplicationAPI::m_ExitCodeCond, CNcbiApplicationAPI::m_HideArgs, CNcbiApplicationAPI::m_Instance, CNcbiApplicationAPI::m_PhoneHomePolicy, CNcbiApplicationAPI::m_PhoneHomePolicy_Ownership, CNcbiApplicationAPI::m_StdioFlags, CNcbiApplicationAPI::m_Version, NCBI_APP_SBUILDINFO_DEFAULT, NCBI_SC_VERSION_PROXY, NCBI_SUBVERSION_REVISION_PROXY, NCBI_TEAMCITY_PROJECT_NAME_PROXY, NCBI_THROW, CRef< C, Locker >::Reset(), CDiagContext::SetGlobalAppState(), CVersionAPI::SetVersionInfo(), and VerifyCpuCompatibility().

CNcbiApplicationGuard()

CNcbiApplicationGuard::CNcbiApplicationGuard ( CNcbiApplicationAPI *  app )

private

Definition at line 96 of file ncbiapp.cpp.

References CNcbiApplicationAPI::GetInstanceLock(), CNcbiApplicationGuard::m_App, and CNcbiApplicationGuard::m_AppLock.

CNcbiToolkit_LogMessage() [1/2]

ncbi::CNcbiToolkit_LogMessage::CNcbiToolkit_LogMessage ( const CNcbiToolkit_LogMessage &  )

private

CNcbiToolkit_LogMessage() [2/2]

CNcbiToolkit_LogMessage::CNcbiToolkit_LogMessage ( const SDiagMessage &  msg )

protected

Definition at line 64 of file ncbi_toolkit.cpp.

CNullable() [1/2]

template<class TValue , class TNullToValue = SThrowOnNull<TValue>>

CNullable< TValue, TNullToValue >::CNullable ( ENull  = null )

inline

Create an empty nullable.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 679 of file ncbimisc.hpp.

CNullable() [2/2]

template<class TValue , class TNullToValue = SThrowOnNull<TValue>>

CNullable< TValue, TNullToValue >::CNullable ( TValue  value )

inline

Initialize nullable with a specific value.

Definition at line 682 of file ncbimisc.hpp.

Create()

template<class X >

static X* Creater< X >::Create ( void  )

inlinestatic

Default create function.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 342 of file ncbimisc.hpp.

CSafeFlags() [1/3]

template<class Enum >

CSafeFlags< Enum >::CSafeFlags ( )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1255 of file ncbimisc.hpp.

Referenced by CSafeFlags< Enum >::operator&(), CSafeFlags< Enum >::operator^(), CSafeFlags< Enum >::operator|(), and CSafeFlags< Enum >::operator~().

CSafeFlags() [2/3]

template<class Enum >

CSafeFlags< Enum >::CSafeFlags ( enum_type  flags )

inline

Definition at line 1264 of file ncbimisc.hpp.

CSafeFlags() [3/3]

template<class Enum >

CSafeFlags< Enum >::CSafeFlags ( storage_type  flags )

inlineexplicit

Definition at line 1260 of file ncbimisc.hpp.

CStrictId() [1/3]

template<class TKey , class TStorage >

CStrictId< TKey, TStorage >::CStrictId ( const TThis &  other )

inline

Definition at line 899 of file ncbimisc.hpp.

CStrictId() [2/3]

template<class TKey , class TStorage >

template<typename T >

CStrictId< TKey, TStorage >::CStrictId ( T  id, typename enable_if< is_same< T, TId >::value, T >::type  = 0  )

inlineexplicit

Definition at line 927 of file ncbimisc.hpp.

CStrictId() [3/3]

template<class TKey , class TStorage >

CStrictId< TKey, TStorage >::CStrictId ( void  )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 898 of file ncbimisc.hpp.

Delete() [1/3]

template<class X >

static void Deleter< X >::Delete ( X *  object )

inlinestatic

Default delete function.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 351 of file ncbimisc.hpp.

Delete() [2/3]

template<class X >

static void ArrayDeleter< X >::Delete ( X *  object )

inlinestatic

Array delete function.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 360 of file ncbimisc.hpp.

Delete() [3/3]

template<class X >

static void CDeleter< X >::Delete ( X *  object )

inlinestatic

C Language deallocation function.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 369 of file ncbimisc.hpp.

References free().

DisableArgDescriptions()

void CNcbiApplicationAPI::DisableArgDescriptions ( TDisableArgDesc  disable = fDisableStdArgs )

protected

Definition at line 1306 of file ncbiapp.cpp.

References CNcbiApplicationAPI::m_DisableArgDesc.

Referenced by CCgiApplication::CCgiApplication(), CCpGDemoApp::CCpGDemoApp(), CEntrez2ClientApp::CEntrez2ClientApp(), CGeneModelDemoApp::CGeneModelDemoApp(), CGridCommandLineInterfaceApp::CGridCommandLineInterfaceApp(), CRegexpLocApp::CRegexpLocApp(), CRemoteCgiApp::CRemoteCgiApp(), and CNcbiApplogApp::Init().

DryRun()

int CNcbiApplicationAPI::DryRun ( void  )

virtual

Test run the application.

It is only supposed to test if the Run() is possible, or makes sense: that is, test all preconditions etc.

Returns

Exit code.

Reimplemented in CNcbiTestApplication, and CTbl2AsnApp.

Definition at line 292 of file ncbiapp.cpp.

References ERR_POST_X, and Info().

Referenced by CNcbiApplicationAPI::x_TryMain().

end() [1/2]

template<size_t KEmbeddedSize, class TType = char>

TType* CFastBuffer< KEmbeddedSize, TType >::end ( void  )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1185 of file ncbimisc.hpp.

References CFastBuffer< KEmbeddedSize, TType >::m_Buffer, and CFastBuffer< KEmbeddedSize, TType >::m_Size.

end() [2/2]

template<size_t KEmbeddedSize, class TType = char>

const TType* CFastBuffer< KEmbeddedSize, TType >::end ( void  ) const

inline

Definition at line 1186 of file ncbimisc.hpp.

References CFastBuffer< KEmbeddedSize, TType >::m_Buffer, and CFastBuffer< KEmbeddedSize, TType >::m_Size.

ErrCode()

int CNcbiToolkit_LogMessage::ErrCode

(

void

)

const

Get error code.

Definition at line 101 of file ncbi_toolkit.cpp.

References SDiagMessage::m_ErrCode, and ncbi::CNcbiToolkit_LogMessage::m_Msg.

ErrSubCode()

int CNcbiToolkit_LogMessage::ErrSubCode

(

void

)

const

Get error subcode.

Definition at line 106 of file ncbi_toolkit.cpp.

References SDiagMessage::m_ErrSubCode, and ncbi::CNcbiToolkit_LogMessage::m_Msg.

Execute() [1/2]

virtual void CNcbiActionGuard::CAction_Base::Execute ( void  ) const

pure virtual

Implemented in CNcbiActionGuard::CAction< TFunc >.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Execute() [2/2]

template<class TFunc >

void CNcbiActionGuard::CAction< TFunc >::Execute ( void  ) const

inlineoverridevirtual

Implements CNcbiActionGuard::CAction_Base.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1431 of file ncbimisc.hpp.

References CNcbiActionGuard::CAction< TFunc >::m_Func.

ExecuteActions()

void CNcbiActionGuard::ExecuteActions ( void  )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1397 of file ncbimisc.hpp.

References ERR_POST, ITERATE, and CNcbiActionGuard::m_Actions.

Referenced by CNcbiApplicationAPI::ExecuteOnExitActions(), and CNcbiActionGuard::~CNcbiActionGuard().

ExecuteOnExitActions()

void CNcbiApplicationAPI::ExecuteOnExitActions ( )

protected

Should only be called from the destructors of classes derived from CNcbiApplicationAPI - if it is necessary to access their data members and virtual methods; or to dynamic_cast<> from the base app class.

See also

AddOnExitAction()

Definition at line 206 of file ncbiapp.cpp.

References CNcbiActionGuard::ExecuteActions(), and CNcbiApplicationAPI::m_OnExitActions.

Referenced by CNcbiApplication::~CNcbiApplication(), and CNcbiApplicationAPI::~CNcbiApplicationAPI().

Exit()

void CNcbiApplicationAPI::Exit ( void  )

virtual

Cleanup on application exit.

Perform cleanup before exiting. The default behavior of this is "do nothing". If you have special cleanup logic that needs to be performed, then you must override this method with your own logic.

Reimplemented in CSubImageApp, CImageDemoApp, CConvImageApp, CBam2GraphApp, CFeatTreeSampleApp, CEUtilsApp, CDbapiSimpleApp, VSRunSampleApplication, CBlastDemoApplication, CBlastSampleApplication, CBlastDemoApplication, CSampleBasicApplication, CAnalyzeShiftApp, CProcessFilesApp, CReadFilesApp, CColumnarVCFReaderApp, CTestDispatchApp, CAppJobTestApplication, CObjConvProfile, CProjBulderApp, CStreamTestApp, CMytestApplication, SegMaskerApplication, CDemoApp, CObjExtractApp, CNmer_repeatsApplication, CIdfetchApplication, CId2FetchApp, CId1FetchApp, CId1FetchApp, CFormatGuessApp, CFeatImportApp, Cn3DNoWin, CVDBTblastnApp, CVDBBlastnApp, CGuideTreeApplication, CConvert2BlastMaskApplication, BlastdbCopyApplication, CBlastDbCheckApplication, CWalkAsnCacheApplication, CAsnSubCacheCreateApplication, CReadIndexSpeedApp, CPrimeCacheApplication, CAsnCacheDumpSeqIdsApplication, CConcatSeqEntriesApplication, CCacheIndexCopyApp, CAsnCacheTestApplication, CAgpconvertApplication, CAgpValidateApplication, CAdapterSearchApplication, COmssa2pepxmlApplication, CMultiApplication, CMultiApplication, CClustererApplication, CBlastKmerBuildIndexApplication, CBlastKmerApplication, CCkblastindexApplication, CGumbelParamsApplication, CBlastInputDemoApplication, CDemoScoreBuilderApp, CTestCompartApplication, CAlignCleanupApplication, CNCBIwxApplication, CCgiApplication, CSdbapiTest, CDbapiTest, CUsageReportPhoneHomeSampleApp, CDbapiSampleApp, CAppNWA, CAppHitFilter, and CCompartApp.

Definition at line 299 of file ncbiapp.cpp.

Referenced by CCgiApplication::Exit(), and CNcbiApplicationAPI::x_TryMain().

File()

string CNcbiToolkit_LogMessage::File

(

void

)

const

Get file name in which message was originated.

Definition at line 119 of file ncbi_toolkit.cpp.

References SDiagMessage::m_File, and ncbi::CNcbiToolkit_LogMessage::m_Msg.

FindProgramExecutablePath()

string CNcbiApplicationAPI::FindProgramExecutablePath ( int  argc, const char *const *  argv, string *  real_path = 0  )

staticprotected

Find the application's executable file.

Find the path and name of the executable file that this application is running from. Will be accessible by GetArguments().GetProgramName().

Parameters

argc	Standard argument count "argc".
argv	Standard argument vector "argv".
real_path	If non-NULL, will get the fully resolved path to the executable.

Returns

Name of application's executable file (may involve symlinks).

See also

GetArguments().GetProgramName(), GetProgramExecutablePath

Definition at line 1413 of file ncbiapp.cpp.

References _ASSERT, _T_STDSTRING, _TX, BOOL, buf, CDll::eAutoUnload, eFollowLinks, CDll::eLoadNow, eUnknown, FAR, NStr::fSplit_MergeDelimiters, NStr::fSplit_Truncate, CNcbiEnvironment::Get(), CNcbiApplicationAPI::GetArguments(), CDirEntry::GetBase(), CDir::GetCwd(), CDll::GetEntryPoint_Func(), CNcbiApplicationAPI::GetEnvironment(), CDirEntry::GetPathSeparator(), CNcbiArguments::GetProgramName(), HANDLE, CNcbiApplicationAPI::InstanceGuard(), int, NStr::IntToString(), CDirEntry::IsAbsolutePath(), ITERATE, kEmptyStr, CDirEntry::MakePath(), NCBI_THROW, NcbiSys_getenv, CDirEntry::NormalizePath(), NULL, PATH_MAX, s_Init(), s_Path, NStr::Split(), and CDirEntry::SplitPath().

Referenced by CNcbiApplicationAPI::AppMain(), and CNcbiApplicationAPI::GetAppName().

Finish()

virtual void IPhoneHomePolicy::Finish ( void  )

inlinevirtual

Deinitialize policy/reporting API.

Redefine if you want to gracefully terminate reporting API. Automatically called from the destructor.

Reimplemented in CSamplePhoneHomePolicy.

Definition at line 95 of file phone_home_policy.hpp.

Referenced by CNcbiApplicationAPI::SetPhoneHomePolicy(), and IPhoneHomePolicy::~IPhoneHomePolicy().

FinishedLoadingConfig()

bool CNcbiApplicationAPI::FinishedLoadingConfig ( void  ) const

inline

Check if the application has finished loading config file (successfully or not).

Definition at line 796 of file ncbiapp_api.hpp.

References CNcbiApplicationAPI::m_ConfigLoaded.

Referenced by g_GetConfigDouble(), g_GetConfigFlag(), g_GetConfigInt(), g_GetConfigString(), and CParam< TDescription >::sx_GetDefault().

first() [1/2]

template<class Base , class Member >

first_type& pair_base_member< Base, Member >::first ( )

inline

Definition at line 273 of file ncbimisc.hpp.

first() [2/2]

template<class Base , class Member >

const first_type& pair_base_member< Base, Member >::first ( ) const

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 269 of file ncbimisc.hpp.

Referenced by CConstRef< CSeq_loc >::AtomicReleaseTo(), CRef< CAlnMixSegment >::AtomicReleaseTo(), CConstRef< CSeq_loc >::AtomicResetFrom(), CRef< CAlnMixSegment >::AtomicResetFrom(), CGuard< IRegistry, SSimpleReadLock< IRegistry > >::GetLock(), CRef< CAlnMixSegment >::GetLocker(), CConstRef< CSeq_loc >::GetLocker(), CGuard< IRegistry, SSimpleReadLock< IRegistry > >::GetUnlock(), CRef< CAlnMixSegment >::Release(), CConstRef< CSeq_loc >::Release(), CRef< CAlnMixSegment >::ReleaseOrNull(), CConstRef< CSeq_loc >::ReleaseOrNull(), AutoArray< CS_INT >::reset(), AutoPtr< CNcbistrstream_Base >::reset(), CRef< CAlnMixSegment >::Reset(), CConstRef< CSeq_loc >::Reset(), pair_base_member< TKeyGetter, CTreeNode * >::Swap(), CRef< CAlnMixSegment >::Swap(), CConstRef< CSeq_loc >::Swap(), CBlobIdFor< Value, Converter >::ToString(), CStaticArraySearchBase< NStaticArray::PKeyValuePair< SStaticPair< KeyType, ValueType > >, less< KeyType > >::value_comp(), CRef< CAlnMixSegment >::x_AssignFromRef(), CConstRef< CSeq_loc >::x_AssignFromRef(), CRef< CAlnMixSegment >::x_LockFromMoveConstructor(), CConstRef< CSeq_loc >::x_LockFromMoveConstructor(), CRef< CAlnMixSegment >::x_LockFromPtr(), CConstRef< CSeq_loc >::x_LockFromPtr(), CRef< CAlnMixSegment >::x_LockFromRef(), CConstRef< CSeq_loc >::x_LockFromRef(), CRef< CAlnMixSegment >::x_MoveAssign(), and CConstRef< CSeq_loc >::x_MoveAssign().

FlushDiag()

SIZE_TYPE CNcbiApplicationAPI::FlushDiag	(	CNcbiOstream *	os,
		bool	close_diag = false
	)

Flush the in-memory diagnostic stream (for "eDS_ToMemory" case only).

In case of "eDS_ToMemory", the diagnostics is stored in the internal application memory buffer ("m_DiagStream"). Call this function to dump all the diagnostics to stream "os" and purge the buffer.

Parameters

os	Output stream to dump diagnostics to. If it is NULL, then nothing will be written to it (but the buffer will still be purged).
close_diag	If "close_diag" is TRUE, then also destroy "m_DiagStream".

Returns

Total number of bytes actually written to "os".

Definition at line 315 of file ncbiapp.cpp.

References CDiagContext::DiscardMessages(), CDiagContext::FlushMessages(), GetDiagContext(), GetDiagHandler(), and SetDiagStream().

Referenced by CNcbiApplicationAPI::~CNcbiApplicationAPI().

g_ThrowOnNull()

NCBI_XNCBI_EXPORT void g_ThrowOnNull

(

void

)

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 861 of file ncbiexpt.cpp.

References NCBI_THROW.

Referenced by SThrowOnNull< TValue >::operator()().

get() [1/3]

template<class Enum >

storage_type CSafeFlags< Enum >::get ( void  ) const

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1269 of file ncbimisc.hpp.

References CSafeFlags< Enum >::m_Flags.

Referenced by CSafeFlags< Enum >::operator!=(), CSafeFlags< Enum >::operator&(), operator<<(), CSafeFlags< Enum >::operator==(), CSafeFlags< Enum >::operator^(), CSafeFlags< Enum >::operator|(), and CSafeFlags< Enum >::operator~().

Get() [1/3]

CNcbiApplicationAPI* CNcbiApplicationGuard::Get ( void  )

inline

Definition at line 110 of file ncbiapp_api.hpp.

References CNcbiApplicationGuard::m_App.

Referenced by CNcbiApplicationGuard::operator*(), CNcbiApplicationGuard::operator->(), and s_CreateISynRegistry().

Get() [2/3]

const CNcbiApplicationAPI* CNcbiApplicationGuard::Get ( void  ) const

inline

Definition at line 111 of file ncbiapp_api.hpp.

References CNcbiApplicationGuard::m_App.

get() [2/3]

template<class X , class Del = Deleter<X>>

element_type* AutoPtr< X, Del >::get ( void  ) const

inline

Get pointer.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 469 of file ncbimisc.hpp.

Referenced by CSeqMaskerUsetHash::add_ht_info(), CSeqMaskerUsetHash::add_vt_info(), CAutomaticGenCodeSingleton::AddGeneticCode(), CFileModules::AddModule(), CRPCClient< TRequest, TReply >::AsyncConnect(), CBDB_BlobSplitStore< TBV, TObjDeMux, TL >::BlobSize(), BOOST_AUTO_TEST_CASE(), CAlignCompare::SAlignment::BreakOnBoundaries(), BuildAln(), CSeqMap::CanResolveRange(), CAutomaticGenCodeSingleton::CAutomaticGenCodeSingleton(), CCgiWatchFile::CCgiWatchFile(), CConnTest::CheckFWConnections(), CVDBBlastUtil::CheckVDBs(), CLadder::CLadder(), CSearch< LEGACY, NHITS >::ClearLadderCalc(), CompressNcbi2na(), CReaderServiceConnector::Connect(), CPSG_Blob_Task::CreateLoadedChunks(), CPssmCddInputTest::CreatePssmInput(), CBDB_BlobSplitStore< TBV, TObjDeMux, TL >::CreateReader(), CTeeDiagHandler::CTeeDiagHandler(), CConnTest::DispatcherOkay(), CSeqMaskerOstatOpt::doFinalize(), CGffObjectLoader::Execute(), CConnTest::ExtraCheckOnFailure(), CBDB_BlobSplitStore< TBV, TObjDeMux, TL >::Fetch(), CAliasTypeStrings::GenerateCode(), CAliasTypeStrings::GenerateUserHPPCode(), CDataType::GetAnyTypeInfo(), CTemplate1TypeStrings::GetArg1Type(), CTemplate2TypeStrings::GetArg2Type(), CNcbiTestApplication::GetArgDescrs(), CPSGDataLoader_Impl::GetCDDAnnotsOnce(), CBlastSeqVectorFromCSeq_data::GetCompressedPlusStrand(), CBlastSeqVectorOM::GetCompressedPlusStrand(), CReaderServiceConnector::GetConnDescription(), CAutoPtrTypeInfo< Data >::GetData(), CPointerTypeStrings::GetDataTypeStr(), CBDB_BlobSplitStore< TBV, TObjDeMux, TL >::GetDb(), CStringPairs< TExtraValuesMap >::GetDecoder(), CDataMember::GetDefault(), CUniSequenceDataType::GetElementType(), CStringPairs< TExtraValuesMap >::GetEncoder(), CConnTest::GetFWConnections(), CIdlerWrapper::GetIdler(), CBamDb::GetIdMapper(), CNcbiTestApplication::GetIniParser(), CTL_RowResult::GetItemInternal(), CSearch< LEGACY, NHITS >::GetLadderCalc(), CBAMDataLoader::GetLoaderNameFromArgs(), CTeeDiagHandler::GetLogName(), CMSHit::GetModInfo(), CMSPeakList::GetMZI(), CDataTypeModule::GetNamespace(), CTeeDiagHandler::GetOriginalHandler(), CFileCode::GetPrimaryClass(), CDataType::GetRealTypeInfo(), CDataMember::GetType(), CCgiWatchFile::HasChanged(), CConnTest::HttpOkay(), CBDB_BlobSplitStore< TBV, TObjDeMux, TL >::InitDbMutex(), CDiagMatcher::IsErrCodeMatcher(), CPubseqReader::LoadGiHash(), CPubseqReader::LoadGiSeq_ids(), CPubseqReader::LoadSeq_idAccVer(), CPubseqReader::LoadSeq_idInfo(), main(), CStringPairs< TExtraValuesMap >::Merge(), MergeExternal(), NcbiOpenURL(), CPipeHandle::Open(), CLadder::operator[](), CRWStreambuf::overflow(), CStringPairs< TExtraValuesMap >::Parse(), CTeeDiagHandler::Post(), CSplitCacheApp::ProcessBlob(), CSplitCacheApp::ProcessEntry(), PsiBlastComputePssmFromAlignment(), CBDB_File::ReadCursor(), CBDB_BlobSplitStore< TBV, TObjDeMux, TL >::ReadRealloc(), CTeeDiagHandler::Reopen(), CMergeVolumes::Run(), CIdlerWrapper::RunIdler(), s_HttpConnectorBuilder(), s_IdLabel(), s_ServiceConnectorBuilder(), s_SocketConnectorBuilder(), s_TestCreatePssmFromFreqs(), CBamDb::SAADBImpl::SAADBImpl(), SERV_GetServers(), CConnTest::ServiceOkay(), CSearch< LEGACY, NHITS >::SetLadderCalc(), CMSHit::SetModInfo(), LinkHspTestFixture::setupLinkHspInputBlastn(), SetupQueries_OMF(), NuclWordFinderTextFixture::setupSequences(), SetupSubjects_OMF(), CFastaOstream::SetWidth(), CRWStreambuf::showmanyc(), CAlignCompare::SAlignment::Slice(), CConnTest::StatefulOkay(), CRWStreambuf::underflow(), CSDBAPI::UpdateMirror(), CSQLITE_Blob::Write(), CStreamLineReader::x_AdvanceEOLSimple(), CStreamLineReader::x_AdvanceEOLUnknown(), CRPCClient< TRequest, TReply >::x_Connect(), CRPCClient< TRequest, TReply >::x_ConnectURL(), CPsiBlastInputClustalW::x_CopyQueryToMsa(), CBDB_RawFile::x_DB_CPut(), CBDB_RawFile::x_DB_Fetch(), CBDB_RawFile::x_DB_Put(), CBDB_RawFile::x_DBC_Fetch(), CSDB_Decryptor::x_Decrypt(), CPsiBlastInputClustalW::x_ExtractAlignmentData(), CPsiBlastInputClustalW::x_ExtractQueryForPssm(), CPsiBlastInputClustalW::x_ExtractQueryFromMsa(), CBlastFastaInputSource::x_FastaToSeqLoc(), x_FormatError(), CId1Reader::x_GetConnection(), CId2Reader::x_GetConnection(), CPubseqReader::x_GetConnection(), CPubseq2Reader::x_GetConnection(), CGen_code_table::x_GetImplementation(), CSeqVector::x_GetIterator(), CLDS2_Database::x_GetStatement(), CLoadLockSetter::x_Init(), CGen_code_table::x_InitImplementation(), CId2FetchApp::x_InitPubSeqConnection(), CTSE_Split_Info::x_LoadChunks(), COSGConnectionPool::x_OpenConnection(), CPdfObject::x_PrintTo(), CId2FetchApp::x_ProcessData(), CPagedFile::x_ReadPage(), CPubseqReader::x_ReceiveData(), CSeqVector::x_ResetIterator(), CDBLBClientApp::x_RunWhatIs(), CDBLBClientApp::x_RunWhereIs(), CPubseq2Reader::x_SendPacket(), CId2FetchApp::x_SendRequestPacket(), CPsiBlastInputClustalW::x_ValidateQueryInMsa(), CFastaOstream::x_WriteSequence(), CRWStreambuf::xsgetn(), and CRWStreambuf::xsputn().

get() [3/3]

template<class X , class Del = ArrayDeleter<X>>

element_type* AutoArray< X, Del >::get ( void  ) const

inline

Get pointer.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 581 of file ncbimisc.hpp.

Referenced by CCompressionStreambuf::CCompressionStreambuf(), CBamString::clear(), CLZOCompression::CompressBlock(), CTL_RowResult::CTL_RowResult(), CBamString::data(), CMySQL_LangCmd::EscapeString(), CDB_Object::GetLogString(), CBufferedLineReader::GetPosition(), CWigBufferedLineReader::GetPosition(), CArchiveMemory::Load(), CQueue::LoadFromDump(), CSeqVector_CI::operator--(), CSeqVector_CI::operator=(), CGeneFileUtils::ReadGeneInfo(), CSparseKmerCounts::Reset(), CLZOBuffer::ResetBuffer(), CSeqVector_CI::SetPos(), CSeqVector_CI::x_BackupSize(), CSeqVector_CI::x_CacheOffset(), CSeqVector_CI::x_CacheSize(), CStatementBase::x_GetData(), CSeqVector_CI::x_InitializeCache(), CSeqVector_CI::x_NextCacheSeg(), CSeqVector_CI::x_PrevCacheSeg(), CBGZFFile::x_ReadBlock(), CBufferedLineReader::x_ReadBuffer(), CWigBufferedLineReader::x_ReadBuffer(), CSeqVector_CI::x_ResetBackup(), CSeqVector_CI::x_ResetCache(), CSeqVector_CI::x_ResizeCache(), CSeqVector_CI::x_SetPos(), CSeqVector_CI::x_SwapCache(), CSeqVector_CI::x_UpdateCacheDown(), and CSeqVector_CI::x_UpdateCacheUp().

Get() [3/3]

template<class TKey , class TStorage >

TId CStrictId< TKey, TStorage >::Get ( void  ) const

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 921 of file ncbimisc.hpp.

Referenced by CObjectOStream::WriteGi().

GetAppName()

string CNcbiApplicationAPI::GetAppName ( EAppNameType  name_type = eBaseName, int  argc = 0, const char *const *  argv = NULL  )

static

Definition at line 1377 of file ncbiapp.cpp.

References CNcbiApplicationAPI::eBaseName, eFollowLinks, CNcbiApplicationAPI::eFullName, eIgnoreLinks, CNcbiApplicationAPI::eRealName, CNcbiApplicationAPI::FindProgramExecutablePath(), CNcbiApplicationAPI::GetProgramDisplayName(), CNcbiApplicationAPI::GetProgramExecutablePath(), CNcbiApplicationAPI::InstanceGuard(), NULL, and CDirEntry::SplitPath().

Referenced by COSGServiceMapper::Configure(), CDirEntry::CreateAbsolutePath(), FtaErrInit(), CDiagContext::GetAppName(), COSGServiceMapper::InitDefaults(), Nlm_ErrPostEx(), CDbapiSimpleApp::ParseArgs(), CCgiRequestProcessor::ProcessVersionRequest(), CFlat2AsnApp::Run(), s_GetProgramPath(), s_InitAllKNS(), and CNcbiApplicationAPI::SetProgramDisplayName().

GetArgDescriptions()

const CArgDescriptions * CNcbiApplicationAPI::GetArgDescriptions ( void  ) const

inlineprotected

Get argument descriptions (set by SetupArgDescriptions)

Definition at line 818 of file ncbiapp_api.hpp.

References CNcbiApplicationAPI::m_ArgDesc.

Referenced by CCgiApplication::GetArgs(), CCgiApplication::InitArgs(), CCgiRequestProcessor::OnException(), CCgiRequestProcessor::ProcessHelpRequest(), and CMakeScoreMethodApp::Run().

GetArgs()

const CArgs & CNcbiApplicationAPI::GetArgs ( void  ) const

virtual

Get parsed command line arguments.

Get command line arguments parsed according to the arg descriptions set by SetupArgDescriptions(). Throw exception if no descriptions have been set.

Returns

The CArgs object containing parsed cmd.-line arguments.

See also

SetupArgDescriptions().

Reimplemented in CCgiApplication.

Definition at line 305 of file ncbiapp.cpp.

References CNcbiApplicationAPI::m_Args, and NCBI_THROW.

Referenced by CReadBlastApp::AnalyzeSeqs(), CSamplePhoneHomePolicy::Apply(), CFileModules::BeginXMLSchema(), BOOST_AUTO_TEST_CASE(), CAlignCollapser::CAlignCollapser(), CNcbiApplogApp::Cmd_Generate(), CNcbiApplogApp::Cmd_Health(), CReadBlastApp::CollectFrameshiftedSeqs(), CPsgPerfApplication::ColorMe(), CBlastDBAliasApp::ConvertGiFile(), CBlastDBAliasApp::CreateAliasFile(), CNcbiEncryptApp::Decrypt(), CDbapiSimpleApp::DemoDynamicSql(), CSdbapiSimpleApp::DemoDynamicSql(), CDbapiSimpleApp::DemoParamerizedSql(), CSdbapiSimpleApp::DemoParamerizedSql(), CDbapiSimpleApp::DemoSqlInjection(), CSdbapiSimpleApp::DemoSqlInjection(), CSampleNetCacheClient::DemoStream(), CPsiBlastApp::DoIterations(), CReadBlastApp::dump_fasta_for_pretty_blast(), DumpExpected(), CNcbiEncryptApp::Encrypt(), CAlignCollapser::FilterAlignments(), CDataTool::GenerateCode(), CNcbiEncryptApp::GenerateKey(), SGridWorkerNodeImpl::GetArgs(), CCgiApplication::GetArgs(), CJniUtil::GetArgsFromNcbiApp(), CAlignCollapser::GetCollapsedAlgnments(), pub_report::CPubReportApp::GetEutilsOnly(), CDemoApp::GetIds(), pub_report::CPubReportApp::GetInputStream(), CIdMapperApp::GetMapper(), pub_report::CPubReportApp::GetMaxDateCheck(), CCodeGenerator::GetOpt(), pub_report::CPubReportApp::GetOutputStream(), subfuse::CSubfuseApp::GetOutputStream(), CMytestApplication::GetSeqEntry(), pub_report::CPubReportApp::GetSerialDataFormat(), CIdMapperApp::GetSourceIds(), CCleanupApp::HandleSeqEntry(), CFeatTreeSampleApp::Init(), CIgBlastnApp::Init_Worker_Threads(), CCgiApplication::InitArgs(), pub_report::CPubReportApp::IsJournalReport(), pub_report::CPubReportApp::IsUnpublishedReport(), CAlnVwrApp::LoadDenseg(), CAlnMrgApp::LoadInputAlns(), CId1FetchApp::LookUpGI(), NCBITEST_AUTO_INIT(), NCBITEST_INIT_VARIABLES(), SGridWorkerNodeImpl::OfflineRun(), CAsn2FastaApp::OpenFastaOstream(), CDbapiSimpleApp::ParseArgs(), CSdbapiSimpleApp::ParseArgs(), CProjBulderApp::ParseArguments(), CBlastFormatterApp::PrintFormattedOutput(), CBlastFormatterVdbApp::PrintFormattedOutput(), CAlnMrgApp::PrintMergedAln(), CAsn2FastaApp::PrintQualityScores(), CPsgPerfApplication::PrintResult(), CSplitCacheApp::Process(), CBlastDemoApplication::ProcessCommandLineArgs(), CDataTool::ProcessData(), CBam2GraphApp::ProcessFile(), CDataTool::ProcessModules(), CBiosampleChkApp::ProcessOneFile(), CBam2GraphApp::ProcessSrz(), CNcbiApplogApp::Redirect(), CDemoContigAssemblyApp::Run(), CMergeyApp::Run(), CNgAlignApp::Run(), CProSplignApp::Run(), CSRSearchApplication::Run(), CReadresult::Run(), COMSSA::Run(), COMSSAMerge::Run(), CDemoSeqQaApp::Run(), CBlastFormatterApp::Run(), CBlastnApp::Run(), CBlastpApp::Run(), CBlastxApp::Run(), CDeltaBlastApp::Run(), CPsiBlastApp::Run(), CRPSBlastApp::Run(), CRPSTBlastnApp::Run(), CSeedTopApp::Run(), CTblastnApp::Run(), CTblastxApp::Run(), CBlastDBAliasApp::Run(), CBlastdbConvertApp::Run(), CBlastDBCmdApp::Run(), CBlastFormatterVdbApp::Run(), CBlastVdbCmdApp::Run(), CCompartApp::Run(), CCompactSAMApplication::Run(), CExonSelectorApplication::Run(), CAppHitFilter::Run(), CIgBlastnApp::Run(), CIgBlastpApp::Run(), CMagicBlastApp::Run(), CPsgClientApp::Run(), CRMBlastnApp::Run(), CSplignApp::Run(), CSrcChkApp::Run(), seqsubmit_split::CSeqSubSplitter::Run(), CVecScreenApp::Run(), CDbapiDriverSampleApp::Run(), CDbapiSampleApp::Run(), CTestGuiRegistryApp::Run(), CGBProjectTool::Run(), CNcbiApplogApp::Run(), CTax4BlastDemo::Run(), CHugeFileDemoApp::Run(), CDbapiTest::Run(), CSdbapiTest::Run(), CAnnotWriterApp::Run(), CAsn2FastaApp::Run(), CAsn2FlatApp::Run(), CCleanupApp::Run(), CDiscRepApp::Run(), CMultiReaderApp::Run(), pub_report::CPubReportApp::Run(), CPubmedFetchApplication::Run(), CTestRemoteUpdaterApplication::Run(), SGridWorkerNodeImpl::Run(), CGridWorkerApp::Run(), CThreadedApp::Run(), CAVApp::Run(), CAlignCleanupApplication::Run(), CTestCompartApplication::Run(), CDemoScoreBuilderApp::Run(), CBlastInputDemoApplication::Run(), CGumbelParamsApplication::Run(), CCkblastindexApplication::Run(), CBlastKmerApplication::Run(), CBlastKmerBuildIndexApplication::Run(), CClustererApplication::Run(), CMultiApplication::Run(), CLocalFinderApp::Run(), COmssa2pepxmlApplication::Run(), CAdapterSearchApplication::Run(), CCpGDemoApp::Run(), CGeneModelDemoApp::Run(), CRegexpLocApp::Run(), CXcompareAnnotsApplication::Run(), CWinMaskDemoApplication::Run(), CAgpValidateApplication::Run(), CAgpconvertApplication::Run(), CAsnCacheTestApplication::Run(), CCacheIndexCopyApp::Run(), CConcatSeqEntriesApplication::Run(), CAsnCacheDumpSeqIdsApplication::Run(), CPrimeCacheApplication::Run(), CReadIndexSpeedApp::Run(), CAsnSubCacheCreateApplication::Run(), CWalkAsnCacheApplication::Run(), CBiosampleChkApp::Run(), BlastdbCopyApplication::Run(), CGuideTreeApplication::Run(), CVDBBlastnApp::Run(), CVDBTblastnApp::Run(), Cn3DNoWin::Run(), CCompartApplication::Run(), CConversionApp::Run(), CDBLBClientApp::Run(), CDustMaskApplication::Run(), CFeatImportApp::Run(), CFormatGuessApp::Run(), CGapStatsApplication::Run(), CGffDeconcatApp::Run(), CGi2TaxIdApp::Run(), CHgvsToSeqfeatConverter::Run(), CId1FetchApp::Run(), CId2FetchApp::Run(), CIdfetchApplication::Run(), CMultipatternApp::Run(), CNcbiEncryptApp::Run(), CNetScheduleDApp::Run(), CNetStorageDApp::Run(), CNetStorageGCApp::Run(), CNmer_repeatsApplication::Run(), CObjExtractApp::Run(), CDemoApp::Run(), CReadBlastApp::Run(), SegMaskerApplication::Run(), CMytestApplication::Run(), CSplitCacheApp::Run(), CStreamTestApp::Run(), subfuse::CSubfuseApp::Run(), CWig2tableApplication::Run(), CWinMaskApplication::Run(), CPsgPerfApplication::Run(), CBDB_CacheVerifyApp::Run(), CBDB_FileDumperApp::Run(), CRunTestApplication::Run(), CMysqlDemoApp::Run(), CTestApplication::Run(), CTestBMApp::Run(), CTestDispatchApp::Run(), CMakeScoreMethodApp::Run(), CColumnarVCFReaderApp::Run(), CEntrez2ClientApp::Run(), CAlnMrgApp::Run(), CAlnVwrApp::Run(), CReadFilesApp::Run(), CProcessFilesApp::Run(), CFetchGBProjectApp::Run(), CSampleAlnmgrApplication::Run(), CSampleAsnApplication::Run(), CSampleBasicApplication::Run(), CBlastDemoApplication::Run(), CBlastSampleApplication::Run(), VSRunSampleApplication::Run(), CEUtilsApp::Run(), CHttpSessionApp::Run(), CSampleLds2Application::Run(), CMultiCommandApplication::Run(), CSampleNetCacheClient::Run(), CGridClientSampleApp::Run(), CSampleNetScheduleClient::Run(), CSampleNetScheduleNode::Run(), CRemoteAppClientSampleApp::Run(), CSampleObjectsApplication::Run(), CEditBioseqSampleApp::Run(), CSampleObjmgrApplication::Run(), CBssInfoApp::Run(), CProcessHighestSeObjs::Run(), CSeqAnnotSplicerApp::Run(), CSampleLibtestApplication::Run(), CBam2GraphApp::Run(), CConvImageApp::Run(), CImageDemoApp::Run(), CSubImageApp::Run(), CGapStatsApplication::RunNoCatch(), CDbapiTestSpeedApp::RunSample(), CLangQueryApp::RunSample(), CAsn2FlatApp::SetFlatfileOstream(), CAlnMrgApp::SetOptions(), CSplitCacheApp::SetupCache(), CHttpSessionApp::SetupParam(), Verbose(), CAlnMrgApp::ViewMergedAln(), CAsn2FlatApp::WrapINSDSet(), CBlastFormatterApp::x_AddCmdOptions(), CBlastDBAliasApp::x_AddCmdOptions(), CBlastDBCmdApp::x_AddCmdOptions(), CConvert2BlastMaskApplication::x_AddCmdOptions(), CMakeBlastDBApp::x_AddCmdOptions(), CMakeClusterDBApp::x_AddCmdOptions(), CBlastFormatterVdbApp::x_AddCmdOptions(), CBlastVdbCmdApp::x_AddCmdOptions(), CMakeProfileDBApp::x_AddCmdOptions(), CNgAlignApp::x_AddFilters(), CNgAlignApp::x_AddScorers(), CMakeBlastDBApp::x_BuildDatabase(), CMakeClusterDBApp::x_BuildDatabase(), CDiscRepApp::x_ConstructOutputName(), CBlastDBAliasApp::x_ConvertSeqIDFile(), CNgAlignApp::x_CreateBlastAligner(), CNgAlignApp::x_CreateSequenceSet(), CBlastSampleApplication::x_CreateSSeqLoc(), CDiscRepApp::x_DefaultHeader(), CAppHitFilter::x_DoMultiple(), CAppHitFilter::x_DoPairwise(), CAppHitFilter::x_DumpOutput(), CWig2tableApplication::x_Error(), CAsnSubCacheCreateApplication::x_FetchMissingBlobs(), CAsn2FlatApp::x_FFGenerate(), CAsn2FlatApp::x_GenerateBatchMode(), CAsnSubCacheCreateApplication::x_GetBioseqHandle(), CBlastDBAliasApp::x_GetDbsToAggregate(), CBlastDBAliasApp::x_GetOperationMode(), CBlastVdbCmdApp::x_GetQueries(), CConvert2BlastMaskApplication::x_GetReader(), CDustMaskApplication::x_GetReader(), SegMaskerApplication::x_GetReader(), CGapStatsApplication::x_GetScope(), CMakeBlastDBApp::x_GetUserInputTypeHint(), CConvert2BlastMaskApplication::x_GetWriter(), CDustMaskApplication::x_GetWriter(), SegMaskerApplication::x_GetWriter(), CAgpconvertApplication::x_HandleTaxArgs(), CBlastVdbCmdApp::x_InitApplicationData(), CBlastDBCmdApp::x_InitBlastDB(), CBlastDBCmdApp::x_InitBlastDB_TaxIdList(), CAsn2FlatApp::x_InitNewContext(), CMakeProfileDBApp::x_InitProgramParameters(), CId2FetchApp::x_InitPubSeqConnection(), CBlastDBCmdApp::x_InitSearchRequest(), CAgpconvertApplication::x_IsAnySimpleSubsourceArgSet(), CAppHitFilter::x_LoadConstraints(), CNgAlignApp::x_LoadExternalSequences(), CColumnarVCFReaderApp::x_LoadSerializedData(), CAgpconvertApplication::x_LoadTemplate(), CColumnarVCFReaderApp::x_LoadVCFFile(), CNcbiApplicationAPI::x_LogOptions(), CAsn2FastaApp::x_OpenIStream(), CCleanupApp::x_OpenOStream(), CDiscRepApp::x_Output(), CDiscRepApp::x_ParseDirectory(), CBlastDBCmdApp::x_PrintBlastDatabaseInformation(), CBlastVdbCmdApp::x_PrintBlastDatabaseInformation(), CBlastDBCmdApp::x_PrintBlastDatabaseTaxInformation(), CBlastVdbCmdApp::x_PrintVDBPaths(), CPrimeCacheApplication::x_Process_Fasta(), CPrimeCacheApplication::x_Process_SeqEntry(), CBlastDBCmdApp::x_ProcessBatchEntry(), CBlastDBCmdApp::x_ProcessBatchEntry_NoDup(), CBlastDBCmdApp::x_ProcessBatchPig(), CBlastDBCmdApp::x_ProcessEntry(), CHugeFileDemoApp::x_ProcessFileTraditionally(), CAsn2FastaApp::x_ProcessISubdirectory(), CMakeBlastDBApp::x_ProcessMaskData(), CCleanupApp::x_ProcessOneFile(), CBlastDBCmdApp::x_ProcessSearchRequest(), CBlastVdbCmdApp::x_ProcessSearchRequest(), CBlastDBCmdApp::x_ProcessSearchType(), CAppHitFilter::x_ReadInputHits(), CHugeFileDemoApp::x_RunDemo(), CPsiBlastApp::x_RunLocalPsiBlastIterations(), CDBLBClientApp::x_RunLookup(), CBlastnApp::x_RunMTBySplitDB(), CBlastpApp::x_RunMTBySplitDB(), CBlastxApp::x_RunMTBySplitDB(), CRPSBlastApp::x_RunMTBySplitDB(), CRPSTBlastnApp::x_RunMTBySplitDB(), CTblastnApp::x_RunMTBySplitDB(), CBlastnApp::x_RunMTBySplitQuery(), CBlastpApp::x_RunMTBySplitQuery(), CBlastxApp::x_RunMTBySplitQuery(), CRPSBlastApp::x_RunMTBySplitQuery(), CRPSTBlastnApp::x_RunMTBySplitQuery(), CTblastnApp::x_RunMTBySplitQuery(), CAppNWA::x_RunOnPair(), CDBLBClientApp::x_RunWhatIs(), CDBLBClientApp::x_RunWhereIs(), CBlastDBAliasApp::x_SeqIDFileInfo(), CSplignApp::x_SetupBlastOptions(), CVDBBlastnApp::x_SetupLocalVDBSearch(), CVDBTblastnApp::x_SetupLocalVDBSearch(), CMakeBlastDBApp::x_ShouldParseSeqIds(), CBlastDBCmdApp::x_UseLongSeqIds(), CNetScheduleDApp::x_WritePid(), CNetStorageDApp::x_WritePid(), CAnnotWriterApp::xAssemblyAccession(), CAnnotWriterApp::xAssemblyName(), seqsubmit_split::CSeqSubSplitter::xGetInputObject(), seqsubmit_split::CSeqSubSplitter::xInitInputStream(), CAnnotWriterApp::xProcessInputObject(), and seqsubmit_split::CSeqSubSplitter::xTryProcessSeqEntries().

GetArguments()

const CNcbiArguments & CNcbiApplicationAPI::GetArguments ( void  ) const

inline

Get the application's cached unprocessed command-line arguments.

Definition at line 755 of file ncbiapp_api.hpp.

References CNcbiApplicationAPI::m_Arguments.

Referenced by COMSSA::AppInit(), CSamplePhoneHomePolicy::Apply(), CNcbiApplogApp::Cmd_Generate(), CCgiStatistics::Compose_ProgramName(), CNcbiApplicationAPI::FindProgramExecutablePath(), CMetaRegistry::GetDefaultSearchPath(), CDemoContigAssemblyApp::Init(), CNgAlignApp::Init(), CSRSearchApplication::Init(), CDemoSeqQaApp::Init(), CBlastFormatterApp::Init(), CSeedTopApp::Init(), CBlastDBAliasApp::Init(), CBlastdbConvertApp::Init(), CBlastDBCmdApp::Init(), CMakeBlastDBApp::Init(), CMakeClusterDBApp::Init(), CBlastFormatterVdbApp::Init(), CBlastVdbCmdApp::Init(), CCompartApp::Init(), CCompactSAMApplication::Init(), CExonSelectorApplication::Init(), CCgi2RCgiApp::Init(), CAppHitFilter::Init(), CIdMapperApp::Init(), CAppNWA::Init(), CPsgClientApp::Init(), CSplignApp::Init(), CSrcChkApp::Init(), seqsubmit_split::CSeqSubSplitter::Init(), CVecScreenApp::Init(), CDbapiDriverSampleApp::Init(), CDbapiSampleApp::Init(), CGBProjectTool::Init(), CNcbiApplogApp::Init(), CTax4BlastDemo::Init(), CHugeFileDemoApp::Init(), CDbapiTest::Init(), CSdbapiTest::Init(), pub_report::CPubReportApp::Init(), CGridWorkerApp::Init(), CThreadedApp::Init(), CRemoteCgiApp::Init(), CAVApp::Init(), CAlignCleanupApplication::Init(), CProSplignApp::Init(), CTestCompartApplication::Init(), CBlastInputDemoApplication::Init(), CGumbelParamsApplication::Init(), CCkblastindexApplication::Init(), CClustererApplication::Init(), CMultiApplication::Init(), COmssa2pepxmlApplication::Init(), CAdapterSearchApplication::Init(), CCpGDemoApp::Init(), CRegexpLocApp::Init(), CXcompareAnnotsApplication::Init(), CWinMaskDemoApplication::Init(), CAgpValidateApplication::Init(), CAgpconvertApplication::Init(), CAsnCacheTestApplication::Init(), CCacheIndexCopyApp::Init(), CConcatSeqEntriesApplication::Init(), CAsnCacheDumpSeqIdsApplication::Init(), CPrimeCacheApplication::Init(), CReadIndexSpeedApp::Init(), CAsnSubCacheCreateApplication::Init(), CWalkAsnCacheApplication::Init(), CBDBEnvKeeperApp::Init(), CBiosampleChkApp::Init(), CBlastDbCheckApplication::Init(), BlastdbCopyApplication::Init(), CConvert2BlastMaskApplication::Init(), CGuideTreeApplication::Init(), Cn3DNoWin::Init(), CCompartApplication::Init(), CConversionApp::Init(), CDBLBClientApp::Init(), CDustMaskApplication::Init(), CFeatImportApp::Init(), CFormatGuessApp::Init(), CGapStatsApplication::Init(), CHgvsToSeqfeatConverter::Init(), CId1FetchApp::Init(), CId2FetchApp::Init(), CIdfetchApplication::Init(), CMultipatternApp::Init(), CNcbiEncryptApp::Init(), CNetScheduleDApp::Init(), CNetStorageDApp::Init(), CNetStorageGCApp::Init(), CNmer_repeatsApplication::Init(), CObjExtractApp::Init(), CDemoApp::Init(), CReadBlastApp::Init(), SegMaskerApplication::Init(), CMytestApplication::Init(), CSplitCacheApp::Init(), CStreamTestApp::Init(), subfuse::CSubfuseApp::Init(), CWig2tableApplication::Init(), CWinMaskApplication::Init(), CProjBulderApp::Init(), CPsgPerfApplication::Init(), CNcbiTestApplication::Init(), CBDB_CacheVerifyApp::Init(), CBDB_FileDumperApp::Init(), CRunTestApplication::Init(), CMysqlDemoApp::Init(), CObjConvProfile::Init(), CAppJobTestApplication::Init(), CTestDispatchApp::Init(), CMakeScoreMethodApp::Init(), CColumnarVCFReaderApp::Init(), CEntrez2ClientApp::Init(), CAlnMrgApp::Init(), CAlnVwrApp::Init(), CReadFilesApp::Init(), CProcessFilesApp::Init(), CFetchGBProjectApp::Init(), CSampleAlnmgrApplication::Init(), CSampleAsnApplication::Init(), CSampleBasicApplication::Init(), CBlastDemoApplication::Init(), CBlastSampleApplication::Init(), VSRunSampleApplication::Init(), CDbapiSimpleApp::Init(), CEUtilsApp::Init(), CHttpSessionApp::Init(), CSampleLds2Application::Init(), CMultiCommandApplication::Init(), CSampleNetCacheClient::Init(), CGridClientSampleApp::Init(), CSampleNetScheduleClient::Init(), CSampleNetScheduleNode::Init(), CRemoteAppClientSampleApp::Init(), CSampleObjectsApplication::Init(), CEditBioseqSampleApp::Init(), CFeatTreeSampleApp::Init(), CSampleObjmgrApplication::Init(), CSdbapiSimpleApp::Init(), CBssInfoApp::Init(), CProcessHighestSeObjs::Init(), CSeqAnnotSplicerApp::Init(), CSampleSoapClientApplication::Init(), CSampleLibtestApplication::Init(), CBam2GraphApp::Init(), CConvImageApp::Init(), CImageDemoApp::Init(), CSubImageApp::Init(), CBlastFormatterApp::PrintFormattedOutput(), CBlastFormatterVdbApp::PrintFormattedOutput(), CNcbiApplogApp::PrintTokenInformation(), CCommandArgDescriptions::PrintUsage(), CNcbiApplogApp::Redirect(), CDeltaBlastApp::Run(), CPsiBlastApp::Run(), CTblastxApp::Run(), CMagicBlastApp::Run(), CTest::Run(), CVDBBlastnApp::Run(), CVDBTblastnApp::Run(), Cn3DNoWin::Run(), CTestApplication::Run(), CAdvancedAlignCleanup::SetParams(), CNcbiApplicationAPI::SetupArgDescriptions(), CCgiApplication::ShouldRestart(), CNetScheduleHandler::x_ProcessHealth(), CFastCgiApplicationMT::x_RunFastCGI(), CBlastnApp::x_RunMTBySplitDB(), CBlastpApp::x_RunMTBySplitDB(), CBlastxApp::x_RunMTBySplitDB(), CRPSBlastApp::x_RunMTBySplitDB(), CRPSTBlastnApp::x_RunMTBySplitDB(), CTblastnApp::x_RunMTBySplitDB(), CBlastnApp::x_RunMTBySplitQuery(), CBlastpApp::x_RunMTBySplitQuery(), CBlastxApp::x_RunMTBySplitQuery(), CRPSBlastApp::x_RunMTBySplitQuery(), CRPSTBlastnApp::x_RunMTBySplitQuery(), CTblastnApp::x_RunMTBySplitQuery(), CNCBIwxApplication::x_SetupArgDescriptions(), CTestBMApp::x_SetupArgDescriptions(), CMakeProfileDBApp::x_SetupArgDescriptions(), CCgiSampleApplication::x_SetupArgs(), CFastCgiMTSampleApplication::x_SetupArgs(), CGridCgiSampleApplication::x_SetupArgs(), and CNcbiApplicationAPI::x_TryInit().

GetConfig() [1/2]

CNcbiRegistry & CNcbiApplicationAPI::GetConfig ( void  )

inline

Deprecated:

Please use the const version of GetConfig() or protected GetRWConfig()

Deprecated:

Definition at line 776 of file ncbiapp_api.hpp.

References CNcbiApplicationAPI::m_Config.

GetConfig() [2/2]

const CNcbiRegistry & CNcbiApplicationAPI::GetConfig ( void  ) const

inline

Get the application's cached configuration parameters (read-only).

Application also can use protected GetRWConfig() to get read-write

See also

GetRWConfig

Definition at line 770 of file ncbiapp_api.hpp.

References CNcbiApplicationAPI::m_Config.

Referenced by CCgiApplication::AddLBCookie(), NWinHook::CApiHookMgr::CApiHookMgr(), CBlastDBExtractor::CBlastDBExtractor(), CBlastFormat::CBlastFormat(), CConnIniter::CConnIniter(), CDataSourceInitializer::CDataSourceInitializer(), CFastaBioseqSource::CFastaBioseqSource(), CGI2GRID_ComposeHtmlPage(), CGridRPCBaseClient< CAsnBinCompressed >::CGridRPCBaseClient(), CCgiApplication::CheckMemoryLimit(), CCgiStatistics::Compose(), CCgiStatistics::Compose_Entries(), COSGServiceMapper::Configure(), CDBLB_ServiceMapper::ConfigureFromRegistry(), CDBConnectionFactory::ConfigureFromRegistry(), CDBUDRandomMapper::ConfigureFromRegistry(), CDBUDPriorityMapper::ConfigureFromRegistry(), CDBUniversalMapper::ConfigureFromRegistry(), CPluginManager< TClass >::CPluginManager(), CProjectsLstFileFilter::CProjectsLstFileFilter(), CPSGDataLoader_Impl::CPSGDataLoader_Impl(), CCgiApplication::CreateContextWithFlags_Default(), CCgiApplication::CreateFastCGIWatchFile(), CGraphCacheFactory::CreateObject(), CSampleNetCacheClient::DemoIWriterIReader(), CSampleNetCacheClient::DemoStream(), CSeqFormatter::DumpAll(), EnabledDelayBuffers(), CProjBulderApp::EnumOpt(), CIgBlastArgs::ExtractAlgorithmOptions(), CDebugArgs::ExtractAlgorithmOptions(), FindBlastDbPath(), CProjBulderApp::FindDepGraph(), g_GetConfigDouble(), g_GetConfigFlag(), g_GetConfigInt(), g_GetConfigString(), CSeqDBAtlas::GenerateSearchPath(), CRmtScriptTimeout::Get(), CProjBulderApp::GetBuildConfigs(), CCgiContext::GetConfig(), CProjBulderApp::GetConfigureMacro(), CProjBulderApp::GetDatatoolCommandLine(), CProjBulderApp::GetDatatoolId(), CProjBulderApp::GetDatatoolPathForApp(), CProjBulderApp::GetDatatoolPathForLib(), GetDefaultTmsContext(), CWinMaskerFileStorage::GetEnvPath(), CCgiApplication::GetFastCGIChannelErrors(), CCgiApplication::GetFastCGIComplete_Request_On_Sigterm(), CCgiApplication::GetFastCGIDebug(), CCgiApplication::GetFastCGIHonorExitRequest(), CCgiApplication::GetFastCGIIterations(), CCgiApplication::GetFastCGIMTMaxThreads(), CCgiApplication::GetFastCGIStandaloneServer(), CCgiApplication::GetFastCGIStatLog(), CCgiApplication::GetFastCGIStopIfFailed(), CCgiApplication::GetFastCGIWatchFileRestartDelay(), CCgiApplication::GetFastCGIWatchFileTimeout(), CGencollSvc::GetGenCollService(), GetLinksURL(), CCgiApplication::GetLogOpt(), CProjBulderApp::GetMetaDataFiles(), CProjBulderApp::GetProjectTreeInfo(), CProjBulderApp::GetRegSettings(), CCgiSessionSampleApplication::GetSessionStorage(), CSysLog::HonorRegistrySettings(), CSeqTextDemoDlg::Init(), CCgiApplication::Init(), CGridClientApp::Init(), CSDBAPI::Init(), CGlCgiImageApplication::Init(), CCgiRedirectApplication::Init(), CDemoApp::Init(), CCgiApplicationCached::Init(), CGridCgiApplication::InitGridClient(), CProjBulderApp::ParseArguments(), CProjBulderApp::ProcessLocationMacros(), impl::CDriverContext::ReadDBConfParams(), CSrcChkApp::Run(), CAnnotWriterApp::Run(), CAsn2FastaApp::Run(), CAsn2FlatApp::Run(), CCleanupApp::Run(), CCgiApplication::Run(), CNCBIwxApplication::Run(), CAgpValidateApplication::Run(), CBDBEnvKeeperApp::Run(), CId2FetchApp::Run(), CNetScheduleDApp::Run(), CNetStorageDApp::Run(), CNetStorageGCApp::Run(), CDemoApp::Run(), CSampleAlnmgrApplication::Run(), CEditBioseqSampleApp::Run(), CSampleObjmgrApplication::Run(), CTrackMgrClient::s_Ask(), s_CreateISynRegistry(), s_GetConfigString(), s_GetMandatoryFields(), s_init_UseGeoLocNameForCountry(), s_InitAllKNS(), CGraphTrack::s_InitICache(), CBrowserUtils::SendToBrowser(), ColumnarVcfCache::SetInfoFields(), CFeaturePanel::SetInputObject(), CBiosampleChkApp::Setup(), CSplitCacheApp::SetupCache(), SEutilsParams::SEutilsParams(), CMakeBlastDBApp::x_BuildDatabase(), CNetStorageGCApp::x_CheckExpiration(), CDebugDumpViewer::x_CheckLocation(), CODBC_Connection::x_Connect(), CGBDataLoader_Native::x_CreateDriver(), CNetStorageHandler::x_CreateObjectStream(), CQueueDataBase::x_GetConfigQueues(), CNetCacheBlobFetchApp::x_GetInitString(), CSDB_Decryptor::x_GetKey(), CNetStorageHandler::x_GetObject(), NSNPWebServices::x_GetSearchHost(), CDBLBClientApp::x_GetServiceMapper(), CGuiObjectInfoVariation::x_GetTooltipService(), CRmtFileStatus::x_Init(), SDataLoaderConfig::x_Init(), CBlastFormat::x_InitAlignTemplates(), CBlastFormat::x_InitDeflineTemplates(), CDataCrawlerCache::x_InitICache(), CDiagContext::x_LogEnvironment(), CNcbiApplicationAPI::x_LogOptions(), CNetStorageHandler::x_ProcessConfiguration(), CNetScheduleHandler::x_ProcessGetConf(), CCleanupApp::x_ProcessOneFile(), CNetStorageHandler::x_ProcessReconfigure(), CNetScheduleHandler::x_ProcessReloadConfig(), CNcbiTestApplication::x_ReadConfiguration(), CNSTDatabase::x_ReadDbAccessInfo(), CNetStorageGCApp::x_RemoveObjects(), CDataLoadersUtil::x_SetupASNCacheDataLoader(), CDataLoadersUtil::x_SetupVDBDataLoader(), CSequenceSearchForm::x_UpdateFileList(), COrfSearchForm::x_UpdateKozak(), CBlastDBCmdApp::x_UseLongSeqIds(), and CRemoteUpdater::xSetFromConfig().

GetConfigPath()

const string & CNcbiApplicationAPI::GetConfigPath ( void  ) const

inline

Get the full path to the configuration file (if any) we ended up using.

Definition at line 786 of file ncbiapp_api.hpp.

References CNcbiApplicationAPI::m_ConfigPath.

Referenced by CProjBulderApp::GetSite(), CProjBulderApp::ParseArguments(), CNcbiApplicationAPI::ReloadConfig(), CNetScheduleDApp::Run(), CNetStorageDApp::Run(), CServiceThread::x_CheckConfigFile(), CNetStorageServiceThread::x_CheckConfigFile(), CNetScheduleHandler::x_ProcessHealth(), CNetStorageHandler::x_ProcessReconfigure(), CNetScheduleHandler::x_ProcessReloadConfig(), and CCgiSessionSampleApplication::x_ShowConfigFile().

GetEnvironment()

const CNcbiEnvironment & CNcbiApplicationAPI::GetEnvironment ( void  ) const

inline

Get the application's cached environment.

Definition at line 760 of file ncbiapp_api.hpp.

References CNcbiApplicationAPI::m_Environ.

Referenced by CMsvcConfigure::AnalyzeDefines(), CGRPCServerCallbacks::BeginRequest(), BlastFindMatrixPath(), CCgiUserAgent::CCgiUserAgent(), CNcbiApplogApp::Cmd_Health(), CreateConfigurableFile(), FindBlastDbPath(), CSampleLibraryObject::FindInPath(), CNcbiApplicationAPI::FindProgramExecutablePath(), CProjBulderApp::GenerateMsvcProjects(), CCgiSampleApplication::GetCdVersion(), CArgDescDefault::GetDefaultValue(), SGridWorkerNodeImpl::GetEnvironment(), CSeqTestApplication::Init(), CTestBMApp::Init(), CQueryParseTree::Parse(), CCgiSampleApplication::ProcessPrintEnvironment(), CNcbiApplogApp::Redirect(), CGridCommandLineInterfaceApp::Run(), CNcbiApplogApp::Run(), CCgiApplication::Run(), ASNIOTestApp::Run(), s_init_NewTaxVal(), s_init_UseGeoLocNameForCountry(), CMsvcConfigure::WriteBuildVer(), CMakeBlastDBApp::x_BuildDatabase(), CRequestContext::x_LoadEnvContextProperties(), CDiagContext::x_LogEnvironment(), and CNcbiApplicationAPI::x_LogOptions().

GetErrCodeString()

const char * CAppException::GetErrCodeString ( void  ) const

overridevirtual

Translate from the error code value to its string representation.

Reimplemented from CCoreException.

Definition at line 1773 of file ncbiapp.cpp.

References CAppException::eLoadConfig, CAppException::eNoRegistry, CAppException::eSecond, CAppException::eSetupDiag, CAppException::eUnsetArgs, CCoreException::GetErrCode(), and CException::GetErrCodeString().

GetFullVersion()

const CVersionAPI & CNcbiApplicationAPI::GetFullVersion

(

void

)

const

Get the program version information.

Definition at line 1189 of file ncbiapp.cpp.

References CNcbiApplicationAPI::m_Version.

Referenced by CNcbiApplicationAPI::AppMain(), CDataTool::GenerateCode(), CCgiApplication::PreparseArgs(), CDiagContext_Extra::PrintNcbiAppInfoOnRequest(), CDiagContext_Extra::PrintNcbiAppInfoOnStart(), CCgiRequestProcessor::ProcessVersionRequest(), CAsn2FastaApp::Run(), CAsn2FlatApp::Run(), and SGridWorkerNodeImpl::Run().

GetIdler()

INcbiIdler* GetIdler

(

EOwnership

ownership = eNoOwnership

)

Return currently installed idler or NULL.

Update idler ownership according to the flag.

Definition at line 1839 of file ncbiapp.cpp.

References s_IdlerWrapper.

GetInstanceLock()

CRWLock & CNcbiApplicationAPI::GetInstanceLock ( void  )

staticprotected

Definition at line 119 of file ncbiapp.cpp.

References s_InstanceRWLock.

Referenced by CNcbiApplicationAPI::CNcbiApplicationAPI(), CNcbiApplicationGuard::CNcbiApplicationGuard(), and CNcbiApplicationAPI::~CNcbiApplicationAPI().

GetInstanceMutex()

SSystemMutex & CNcbiApplicationAPI::GetInstanceMutex ( void  )

static

Mutex for application singleton object.

Lock this mutex when calling Instance()

Returns

Reference to application instance mutex.

See also

Instance()

Deprecated:

Use InstanceGuard() instead.

Definition at line 111 of file ncbiapp.cpp.

GetNativeToolkitMessage()

const SDiagMessage & CNcbiToolkit_LogMessage::GetNativeToolkitMessage

(

void

)

const

Get all of the message's data – as provided natively by the Toolkit.

Definition at line 80 of file ncbi_toolkit.cpp.

References ncbi::CNcbiToolkit_LogMessage::m_Msg.

GetPhoneHomePolicy()

IPhoneHomePolicy* CNcbiApplicationAPI::GetPhoneHomePolicy ( ) const

inlineprotected

Return pointer to current Phone Home Policy or NULL.

See also

SetPhoneHomePolicy(), IPhoneHomePolicy

Definition at line 645 of file ncbiapp_api.hpp.

References CNcbiApplicationAPI::m_PhoneHomePolicy.

GetProgramDisplayName()

const string & CNcbiApplicationAPI::GetProgramDisplayName ( void  ) const

inline

Get the application's "display" name.

Get name of this application, suitable for displaying or for using as the base name for other files. Will be the 'name' argument of AppMain if given. Otherwise will be taken from the actual name of the application file or argv[0].

Definition at line 806 of file ncbiapp_api.hpp.

References CNcbiApplicationAPI::m_ProgramDisplayName.

Referenced by CCgiRequest::CalcChecksum(), CRemoteAppLauncher::CRemoteAppLauncher(), CWindowsCmdErrorHandler::CWindowsCmdErrorHandler(), CDataTool::GenerateCode(), SGridWorkerNodeImpl::GetAppName(), CNcbiApplicationAPI::GetAppName(), CUsageReportAPI::GetAppName(), SNetServiceImpl::Init(), CThreadInPool_ForServer::Main(), CAsyncDiagThread::Main(), CCgiApplication::PreparseArgs(), CAsn2FastaApp::Run(), CAsn2FlatApp::Run(), s_GetAppName(), impl::s_TransformLoginData(), CArgDescriptions::SetUsageContext(), CNCBIwxApplication::x_Init_wxApplication(), CNCBIwxApplication::x_SetupArgDescriptions(), and CMultiReaderApp::xSetFormat().

GetProgramExecutablePath()

const string & CNcbiApplicationAPI::GetProgramExecutablePath ( EFollowLinks  follow_links = eIgnoreLinks ) const

inline

Get the application's executable path.

The path to executable file of this application. Return empty string if not possible to determine this path.

Definition at line 812 of file ncbiapp_api.hpp.

References eFollowLinks, CNcbiApplicationAPI::m_ExePath, and CNcbiApplicationAPI::m_RealExePath.

Referenced by CNcbiApplicationAPI::AppStart(), createAnnot(), CNcbiApplicationAPI::GetAppName(), GetDefaultLogLocation(), CCgiApplication::GetDefaultLogPath(), CTestBMApp::Init(), SNetServiceImpl::MakeAuthString(), CDiagContext_Extra::PrintNcbiAppInfoOnStart(), CGetStatisticsProcessor::Process(), CCgiRequestProcessor::ProcessHelpRequest(), COMSSA::Run(), CNcbiApplogApp::Run(), COmssa2pepxmlApplication::Run(), CDiagContext::SetupDiag(), SNetStorageRPC::SNetStorageRPC(), SNetStorage::SConfig::Validate(), CNcbiApplicationAPI::x_LogOptions(), and CNetScheduleHandler::x_ProcessHealth().

GetRWConfig()

CNcbiRegistry & CNcbiApplicationAPI::GetRWConfig ( void  )

inlineprotected

Get the application's cached configuration parameters, accessible for read-write for an application's internal use only.

See also

GetConfig

Definition at line 781 of file ncbiapp_api.hpp.

References CNcbiApplicationAPI::m_Config.

Referenced by CNcbiTestApplication::GetTestRWConfig(), CCgi2RCgiApp::Init(), CRemoteCgiApp::Init(), CStreamTestApp::Init(), CHelloApp::LoadResource(), CProjBulderApp::ParseArguments(), CCgiApplication::ProcessHttpReferer(), CGridCgiApplication::ProcessRequest(), CNcbiApplicationAPI::ReloadConfig(), CGridCommandLineInterfaceApp::Run(), CAsnSubCacheCreateApplication::Run(), CDemoApp::Run(), CGridCommandLineInterfaceApp::SetUp_NetCache(), and CSplitCacheApp::SetupCache().

GetValue()

template<class TValue , class TNullToValue = SThrowOnNull<TValue>>

const TValue& CNullable< TValue, TNullToValue >::GetValue ( void  ) const

inline

Get a const reference to the current value.

If NULL, the reference is a copy of the default value or throw (depending on TNullToValue implementation). In any case the IsNull state is unchanged.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 703 of file ncbimisc.hpp.

Referenced by CGBLoaderParams::GetEnableCDD(), CReaderParams::GetEnableCDD(), CGBLoaderParams::GetEnableSNP(), CReaderParams::GetEnableSNP(), CGBLoaderParams::GetEnableWGS(), CReaderParams::GetEnableWGS(), CPSG_Blob_Task::GetWaitDeadline(), operator<<(), operator==(), ncbi::grid::netcache::search::SBlobInfoImpl::operator[](), CPSG_BlobId::Repr(), CJsonResponse::Set(), CPSG_Request_IpgResolve::x_GetAbsPathRef(), CPSG_Request_IpgResolve::x_GetId(), and CNetStorageObjectLoc::x_Pack().

GetVersion()

CVersionInfo CNcbiApplicationAPI::GetVersion

(

void

)

const

Get the program version information.

See also

SetVersion, SetFullVersion

Definition at line 1184 of file ncbiapp.cpp.

References CVersionAPI::GetVersionInfo(), and CNcbiApplicationAPI::m_Version.

Referenced by CSamplePhoneHomePolicy::Apply(), BlastdbCopyApplication::BlastdbCopyApplication(), CBlastDBAliasApp::CBlastDBAliasApp(), CBlastDbCheckApplication::CBlastDbCheckApplication(), CBlastDBCmdApp::CBlastDBCmdApp(), CBlastdbConvertApp::CBlastdbConvertApp(), CBlastFormatterApp::CBlastFormatterApp(), CBlastFormatterVdbApp::CBlastFormatterVdbApp(), CBlastnApp::CBlastnApp(), CBlastpApp::CBlastpApp(), CBlastVdbCmdApp::CBlastVdbCmdApp(), CBlastxApp::CBlastxApp(), CConvert2BlastMaskApplication::CConvert2BlastMaskApplication(), CDeltaBlastApp::CDeltaBlastApp(), CMagicBlastApp::CMagicBlastApp(), CMakeBlastDBApp::CMakeBlastDBApp(), CMakeClusterDBApp::CMakeClusterDBApp(), CMakeProfileDBApp::CMakeProfileDBApp(), CNcbiApplogApp::Cmd_Health(), CMultiApplication::CMultiApplication(), CPsiBlastApp::CPsiBlastApp(), CRPSBlastApp::CRPSBlastApp(), CRPSTBlastnApp::CRPSTBlastnApp(), CTblastnApp::CTblastnApp(), CTblastxApp::CTblastxApp(), CVDBBlastnApp::CVDBBlastnApp(), CVDBTblastnApp::CVDBTblastnApp(), CProjBulderApp::GenerateUnixProjects(), CUsageReportAPI::GetAppVersion(), CFileModules::GetRefInfo(), CIgBlastnApp::Init(), CIgBlastpApp::Init(), CAgpValidateApplication::Init(), CSampleSoapServerApplication::Init(), CCgiRequestProcessor::ProcessVersionRequest(), CMagicBlastApp::Run(), CNcbiApplogApp::Run(), CProjBulderApp::Run(), s_InitAllKNS(), SCommonDumpHeader::SCommonDumpHeader(), CTable2AsnContext::UpdateSubmitObject(), CQueueDataBase::x_CheckOpenPreconditions(), and CQueueDataBase::x_CreateStorageVersionFile().

HasLoadedConfig()

bool CNcbiApplicationAPI::HasLoadedConfig ( void  ) const

inline

Check if the config file has been loaded.

Definition at line 791 of file ncbiapp_api.hpp.

References CNcbiApplicationAPI::m_ConfigPath.

Referenced by s_GetConfigString().

HideStdArgs()

void CNcbiApplicationAPI::HideStdArgs ( THideStdArgs  hide_mask )

protected

Set the hide mask for the Hide Std Flags.

Definition at line 1312 of file ncbiapp.cpp.

References CNcbiApplicationAPI::m_HideArgs.

Referenced by CEntrez2ClientApp::CEntrez2ClientApp(), CBlastFormatterApp::Init(), CBlastnApp::Init(), CBlastpApp::Init(), CBlastxApp::Init(), CDeltaBlastApp::Init(), CPsiBlastApp::Init(), CRPSBlastApp::Init(), CRPSTBlastnApp::Init(), CSeedTopApp::Init(), CTblastnApp::Init(), CTblastxApp::Init(), CBlastDBAliasApp::Init(), CBlastdbConvertApp::Init(), CBlastDBCmdApp::Init(), CMakeBlastDBApp::Init(), CMakeClusterDBApp::Init(), CBlastFormatterVdbApp::Init(), CBlastVdbCmdApp::Init(), CCompartApp::Init(), CAppHitFilter::Init(), CIgBlastnApp::Init(), CIgBlastpApp::Init(), CMagicBlastApp::Init(), CAppNWA::Init(), CRMBlastnApp::Init(), CSplignApp::Init(), CVecScreenApp::Init(), CTax4BlastDemo::Init(), CBlastInputDemoApplication::Init(), CGumbelParamsApplication::Init(), CBlastKmerApplication::Init(), CBlastKmerBuildIndexApplication::Init(), CClustererApplication::Init(), CMultiApplication::Init(), CAgpconvertApplication::Init(), CBlastDbCheckApplication::Init(), BlastdbCopyApplication::Init(), CConvert2BlastMaskApplication::Init(), CGuideTreeApplication::Init(), CVDBBlastnApp::Init(), CVDBTblastnApp::Init(), CDustMaskApplication::Init(), CNmer_repeatsApplication::Init(), SegMaskerApplication::Init(), CWinMaskApplication::Init(), CReadFilesApp::Init(), CProcessFilesApp::Init(), CBlastSampleApplication::Init(), VSRunSampleApplication::Init(), and CMakeProfileDBApp::x_SetupArgDescriptions().

Idle() [1/2]

void CDefaultIdler::Idle ( void  )

virtual

Implements INcbiIdler.

Definition at line 1786 of file ncbiapp.cpp.

References DiagHandler_Reopen().

Idle() [2/2]

virtual void INcbiIdler::Idle ( void  )

pure virtual

Implemented in CDefaultIdler.

Referenced by CIdlerWrapper::RunIdler().

Init() [1/2]

virtual void IPhoneHomePolicy::Init ( void  )

inlinevirtual

Initialize policy/reporting API.

Reimplemented in CSamplePhoneHomePolicy.

Definition at line 90 of file phone_home_policy.hpp.

Init() [2/2]

void CNcbiApplicationAPI::Init ( void  )

virtual

Initialize the application.

The default behavior of this is "do nothing". If you have special initialization logic that needs to be peformed, then you must override this method with your own logic.

Reimplemented in CFastCgiMTSampleApplication, CCgiApplicationCached, CSubImageApp, CImageDemoApp, CConvImageApp, CCacheDemoApp, CBam2GraphApp, CDataTool, CSampleLibtestApplication, CSampleSoapServerApplication, CSampleSoapClientApplication, CSeqAnnotSplicerApp, CProcessHighestSeObjs, CBssInfoApp, CSdbapiSimpleApp, CSampleObjmgrApplication, CFeatTreeSampleApp, CEditBioseqSampleApp, CSampleObjectsApplication, CRemoteAppClientSampleApp, CCgiSampleApplication, CSampleNetScheduleNode, CSampleNetScheduleClient, CGridClientSampleApp, CGridCgiSampleApplication, CSampleNetCacheClient, CCgiSampleApplication, CMultiCommandApplication, CSampleLds2Application, CHttpSessionApp, CEUtilsApp, CCgiSampleApplication, CDbapiSimpleApp, CCgiSampleApplication, VSRunSampleApplication, CBlastDemoApplication, CBlastSampleApplication, CBlastDemoApplication, CSampleBasicApplication, CSampleAsnApplication, CSampleAlnmgrApplication, CAnalyzeShiftApp, CFetchGBProjectApp, CAce2AsnApp, CProcessFilesApp, CReadFilesApp, CAlnVwrApp, CAlnMrgApp, CAlnTestApp, CAlnBuildApp, CClientGenomicCollectionsSvcApplication, CEntrez2ClientApp, CApp, CColumnarVCFReaderApp, CMakeScoreMethodApp, CTestDispatchApp, CAppJobTestApplication, CTestBMApp, CObjConvProfile, CTestApplication, CMysqlDemoApp, CRunTestApplication, CRunTestApplication, CBDB_MergeTest, CBDB_SplitTest, CBDB_FileDumperApp, CBDB_BLobDemo1, CBDB_PhoneBookDemo3, CBDB_PhoneBookDemo2, CBDB_PhoneBookDemo1, CBDB_CacheVerifyApp, CNcbiTestApplication, CPsgPerfApplication, CProjBulderApp, CWinMaskApplication, CWig2tableApplication, subfuse::CSubfuseApp, CStreamTestApp, CSplitCacheApp, CMytestApplication, SegMaskerApplication, CReadBlastApp, CDemoApp, CDemoApp, CObjExtractApp, CNmer_repeatsApplication, CNetStorageGCApp, CNetStorageDApp, CNetScheduleDApp, CNcbiEncryptApp, CMultipatternApp, CIdfetchApplication, CId2FetchApp, CId1FetchApp, CId1FetchApp, CHgvsToSeqfeatConverter, CGi2TaxIdApp, CGffDeconcatApp, CGapStatsApplication, CFormatGuessApp, CFeatImportApp, CDustMaskApplication, CDBLBClientApp, CConversionApp, CCompartApplication, Cn3DNoWin, CBsDiffApp, CVDBTblastnApp, CVDBBlastnApp, CGuideTreeApplication, CConvert2BlastMaskApplication, BlastdbCopyApplication, CBlastDbCheckApplication, CBiosampleChkApp, CBDBEnvKeeperApp, CWalkAsnCacheApplication, CAsnSubCacheCreateApplication, CReadIndexSpeedApp, CPrimeCacheApplication, CAsnCacheDumpSeqIdsApplication, CConcatSeqEntriesApplication, CCacheIndexCopyApp, CAsnCacheTestApplication, CAsn2Asn, CAgpconvertApplication, CAgpValidateApplication, CWinMaskDemoApplication, CXcompareAnnotsApplication, CRegexpLocApp, CGeneModelDemoApp, CCpGDemoApp, CAdapterSearchApplication, COmssa2pepxmlApplication, CLocalFinderApp, CMultiApplication, CMultiApplication, CClustererApplication, CBlastKmerBuildIndexApplication, CBlastKmerApplication, CCkblastindexApplication, CGumbelParamsApplication, CBlastInputDemoApplication, CDemoScoreBuilderApp, CTestCompartApplication, CProSplignApp, CMergeyApp, CAlignCleanupApplication, CAVApp, CRemoteCgiApp, CGridCgiApplication, CCgiRedirectApplication, CNCBIwxApplication, CGlCgiImageApplication, CThreadedApp, CGridWorkerApp, CGridClientApp, CCgiApplication, CTestRemoteUpdaterApplication, CPubmedFetchApplication, CPubmedFetchApplication, CTbl2AsnApp, CPsgCgiApp, pub_report::CPubReportApp, CPrt2FsmApp, CMultiReaderApp, CDiscRepApp, CAsnvalApp, CCleanupApp, CAsn2FlatApp, CAsn2FastaApp, CAnnotWriterApp, CSdbapiTest, CDbapiTest, CUsageReportPhoneHomeSampleApp, CUsageReportSampleApp, CHugeFileDemoApp, CTax4BlastDemo, CNcbiApplogApp, CSeqTestApplication, CGBProjectTool, CTestGuiRegistryApp, CDbapiSampleApp, CDbapiDriverSampleApp, CVecScreenApp, seqsubmit_split::CSeqSubSplitter, CSrcChkApp, CSplignApp, CRMBlastnApp, CPsgClientApp, CAppNWA, CMagicBlastApp, CIgBlastpApp, CIgBlastnApp, CIdMapperApp, CAppHitFilter, CCgi2RCgiApp, CExonSelectorApplication, CCompactSAMApplication, CCompartApp, CBlastVdbCmdApp, CBlastFormatterVdbApp, CMakeProfileDBApp, CMakeClusterDBApp, CMakeBlastDBApp, CBlastDBCmdApp, CBlastDBCmdApp, CBlastdbConvertApp, CBlastDBAliasApp, CTblastxApp, CTblastnApp, CSeedTopApp, CRPSTBlastnApp, CRPSBlastApp, CPsiBlastApp, CDeltaBlastApp, CBlastxApp, CBlastpApp, CBlastnApp, CBlastFormatterApp, CDemoSeqQaApp, COMSSAMerge, COMSSABase, CReadresult, CSRSearchApplication, CMkIndexApplication, CNgAlignApp, and CDemoContigAssemblyApp.

Definition at line 286 of file ncbiapp.cpp.

Referenced by CCgiApplication::Init(), CGridClientApp::Init(), CGridWorkerApp::Init(), CHttpSessionApp::Init(), CSampleSoapClientApplication::Init(), and CNcbiApplicationAPI::x_TryInit().

Instance()

CNcbiApplicationAPI * CNcbiApplicationAPI::Instance ( void  )

static

Singleton method.

Track the instance of CNcbiApplicationAPI, and throw an exception if an attempt is made to create another instance of the application.

Returns

Current application instance.

See also

GetInstanceMutex()

Definition at line 127 of file ncbiapp.cpp.

References CNcbiApplicationAPI::m_Instance.

Referenced by BOOST_AUTO_TEST_CASE(), CBlastDBExtractor::CBlastDBExtractor(), CSeqDBAtlas::GenerateSearchPath(), GetDefaultTmsContext(), CNcbiApplication::Instance(), CArgDescriptions::SetUsageContext(), and CRemoteUpdater::xSetFromConfig().

InstanceGuard()

CNcbiApplicationGuard CNcbiApplicationAPI::InstanceGuard ( void  )

static

Singleton method.

Get instance of the application and prevent its destruction until the lock is destroyed.

Returns

Current application instance guard.

See also

CNcbiApplicationGuard

Definition at line 133 of file ncbiapp.cpp.

References CNcbiApplicationAPI::CNcbiApplicationGuard, and CNcbiApplicationAPI::m_Instance.

Referenced by CBDB_Cache_OnAppExit::AddOnExitCallback(), CBDB_Env_OnAppExit::AddOnExitCallback(), CAutoEnvironmentVariable::CAutoEnvironmentVariable(), CConnIniter::CConnIniter(), CGridRPCBaseClient< CAsnBinCompressed >::CGridRPCBaseClient(), CID2SNPProcessor_Impl::CID2SNPProcessor_Impl(), CJaegerTracer::CJaegerTracer(), CEnvironmentCleaner::Clean(), CDBLB_ServiceMapper::ConfigureFromRegistry(), CPluginManager< TClass >::CPluginManager(), CPSGDataLoader_Impl::CPSGDataLoader_Impl(), EnabledDelayBuffers(), CNcbiApplicationAPI::FindProgramExecutablePath(), g_GetConfigDouble(), g_GetConfigFlag(), g_GetConfigInt(), g_GetConfigString(), CNcbiApplicationAPI::GetAppName(), CUsageReportAPI::GetAppName(), CUsageReportAPI::GetAppVersion(), CMetaRegistry::GetDefaultSearchPath(), SNetServiceImpl::Init(), CThreadInPool_ForServer::Main(), CAsyncDiagThread::Main(), SNetScheduleAPIImpl::MakeAuthString(), SNetServiceImpl::MakeAuthString(), CPipeHandle::Open(), CQueryParseTree::Parse(), CGetStatisticsProcessor::Process(), s_CreateISynRegistry(), s_GetAppName(), s_GetConfigString(), s_InitAllKNS(), s_InitProxyConfig(), CDiagContext::SetupDiag(), SNetStorageRPC::SNetStorageRPC(), SUvNgHttp2_UserAgentImpl::SUvNgHttp2_UserAgentImpl(), CParam< TDescription >::sx_GetDefault(), CGBDataLoader_Native::x_CreateDriver(), CRequestContext::x_LoadEnvContextProperties(), and CDiagContext::x_LogEnvironment().

IPhoneHomePolicy()

IPhoneHomePolicy::IPhoneHomePolicy ( )

inline

Constructor.

Definition at line 66 of file phone_home_policy.hpp.

IsDryRun()

bool CNcbiApplicationAPI::IsDryRun ( void  ) const

inline

Check if it is a test run.

Definition at line 824 of file ncbiapp_api.hpp.

References CNcbiApplicationAPI::m_DryRun.

IsEnabled()

virtual bool IPhoneHomePolicy::IsEnabled ( void  ) const

inlinevirtual

Return current policy status (enabbed/disabled).

Definition at line 98 of file phone_home_policy.hpp.

References IPhoneHomePolicy::m_IsEnabled.

Referenced by CSamplePhoneHomePolicy::Apply(), and CSamplePhoneHomePolicy::Restore().

IsNull()

template<class TValue , class TNullToValue = SThrowOnNull<TValue>>

bool CNullable< TValue, TNullToValue >::IsNull ( void  ) const

inline

Check if the object is unassigned.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 686 of file ncbimisc.hpp.

Referenced by CVariant::Char(), SPSG_Nullable< size_t >::Cmp(), CPSG_Request_IpgResolve::CPSG_Request_IpgResolve(), CVariant::Double(), CVariant::Float(), CPSG_Blob_Task::GetWaitDeadline(), CGBLoaderParams::IsSetEnableCDD(), CReaderParams::IsSetEnableCDD(), CGBLoaderParams::IsSetEnableSNP(), CReaderParams::IsSetEnableSNP(), CGBLoaderParams::IsSetEnableWGS(), CReaderParams::IsSetEnableWGS(), CVariant::LongChar(), operator<<(), operator==(), CPSG_BlobId::Repr(), CJsonResponse::Set(), CNetStorageObjectLoc::ToJSON(), CVariant::VarChar(), CVariant::VarCharMax(), CPSG_Request_IpgResolve::x_GetAbsPathRef(), CPSG_Request_IpgResolve::x_GetId(), CHttpRequest::x_InitConnection(), and CNetStorageObjectLoc::x_Pack().

IsOwned()

template<class X , class Del = Deleter<X>>

bool AutoPtr< X, Del >::IsOwned ( void  ) const

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 497 of file ncbimisc.hpp.

Referenced by CSocketReaderWriter::Pushback(), and CStreamReader::Pushback().

Line()

size_t CNcbiToolkit_LogMessage::Line

(

void

)

const

Get line number in which message was originated.

Definition at line 124 of file ncbi_toolkit.cpp.

References SDiagMessage::m_Line, and ncbi::CNcbiToolkit_LogMessage::m_Msg.

LoadConfig() [1/2]

bool CNcbiApplicationAPI::LoadConfig ( CNcbiRegistry &  reg, const string *  conf  )

protectedvirtual

Load settings from the configuration file to the registry.

CNcbiApplicationAPI::LoadConfig(reg, conf) just calls LoadConfig(reg, conf, IRegistry::fWithNcbirc).

Definition at line 1291 of file ncbiapp.cpp.

References IRegistry::fWithNcbirc, and CNcbiApplicationAPI::LoadConfig().

LoadConfig() [2/2]

bool CNcbiApplicationAPI::LoadConfig ( CNcbiRegistry &  reg, const string *  conf, CNcbiRegistry::TFlags  reg_flags  )

protectedvirtual

Load settings from the configuration file to the registry.

This method is called from inside AppMain() to load (add) registry settings from the configuration file specified as the "conf" arg passed to AppMain(). The "conf" argument has the following special meanings:

• NULL – don't try to load an application-specific registry from any file at all.
• non-empty – if "conf" contains a path, then try to load from the conf.file of name "conf" (only!). Else - see NOTE. TIP: if the path is not fully qualified then: if it starts from "../" or "./" – look starting from the current working dir.
• empty – compose conf.file name from the application name plus ".ini". If it does not match an existing file, then try to strip file extensions, e.g. for "my_app.cgi.exe" – try subsequently: "my_app.cgi.exe.ini", "my_app.cgi.ini", "my_app.ini".

Regardless, this method normally loads global settings from .ncbirc or ncbi.ini when reg_flags contains fWithNcbirc (as it typically does), even if conf is NULL.

NOTE: If "conf" arg is empty or non-empty, but without path, then the Toolkit will try to look for it in several potentially relevant directories, as described in <corelib/metareg.hpp>.

Throw an exception if "conf" is non-empty, and cannot open file. Throw an exception if file exists, but contains invalid entries.

Parameters

reg	The loaded registry is returned via the reg parameter.
conf	The configuration file to loaded the registry entries from.
reg_flags	Flags for loading the registry

Returns

TRUE only if the file was non-NULL, found and successfully read.

See also

CMetaRegistry::GetDefaultSearchPath

Definition at line 1226 of file ncbiapp.cpp.

References CMetaRegistry::SEntry::actual_name, basename, eFollowLinks, eIgnoreLinks, IRegistry::Empty(), CMetaRegistry::eName_AsIs, CMetaRegistry::eName_Ini, CMetaRegistry::eName_RcOrIni, ERR_POST_X, CMetaRegistry::FindRegistry(), CDirEntry::GetName(), CRef< C, Locker >::GetPointer(), CNcbiRegistry::IncludeNcbircIfAllowed(), Info(), CMetaRegistry::Load(), CNcbiApplicationAPI::m_Arguments, CNcbiApplicationAPI::m_Config, CNcbiApplicationAPI::m_ConfigLoaded, CNcbiApplicationAPI::m_ConfigPath, CNcbiApplicationAPI::m_DefaultConfig, NCBI_THROW, IRWRegistry::Read(), CMetaRegistry::SEntry::registry, CRef< C, Locker >::Reset(), CDirEntry::SplitPath(), str(), and IRegistry::Write().

Referenced by CNcbiApplicationAPI::LoadConfig(), CProjBulderApp::ParseArguments(), and CNcbiApplicationAPI::x_TryInit().

make_c_unique() [1/2]

template<class T >

unique_ptr<T, void(*)(void*)> make_c_unique

(

T *

p

)

Overload for the above for all types of allocated memory that are to be deallocated by free()

Definition at line 1455 of file ncbimisc.hpp.

References free(), and make_c_unique().

make_c_unique() [2/2]

template<class T , typename TDeleter >

unique_ptr<T, TDeleter> make_c_unique	(	T *	p,
		TDeleter	d
	)

Eliminates the necessity for specifying types of both allocated resource and deallocating C function.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1448 of file ncbimisc.hpp.

Referenced by CServiceDiscovery::DiscoverImpl(), make_c_unique(), NAMEDPIPE_CreateConnector(), NcbiOpenURL(), PIPE_CreateConnector(), and CHttpRequest::sx_Adjust().

Message()

string CNcbiToolkit_LogMessage::Message

(

void

)

const

Get text part of the message.

Definition at line 111 of file ncbi_toolkit.cpp.

References kEmptyStr, SDiagMessage::m_Buffer, SDiagMessage::m_BufferLen, ncbi::CNcbiToolkit_LogMessage::m_Msg, and string.

NCBI_EXCEPTION_DEFAULT()

CAppException::NCBI_EXCEPTION_DEFAULT	(	CAppException	,
		CCoreException
	)

NcbiToolkit_Fini()

void ncbi::NcbiToolkit_Fini

(

void

)

Release resources allocated for NCBI C++ Toolkit.

See also

NcbiToolkit_Init

NcbiToolkit_Init()

void ncbi::NcbiToolkit_Init	(	int	argc,
		const TNcbiToolkit_XChar *const *	argv,
		const TNcbiToolkit_XChar *const *	envp = NULL,
		INcbiToolkit_LogHandler *	log_handler = NULL
	)

Initialialize NCBI C++ Toolkit internal infrastructure: arguments, environment, diagnostics, logging.

Note

This function may be called only once – and, before calling any other C++ Toolkit function.

Parameters

argc	Argument count [argc in a regular main(argc, argv)].
argv	Argument vector [argv in a regular main(argc, argv)].
envp	Environment pointer [envp in a regular main(argc, argv, envp)]; a null pointer (the default) corresponds to the standard system array (environ on most Unix platforms).
log_handler	Handler for diagnostic messages that are emitted by the C++ Toolkit code

See also

INcbiToolkit_LogHandler, NcbiToolkit_Fini

NcbiToolkit_RegisterNcbiApplicationFactory()

void ncbi::NcbiToolkit_RegisterNcbiApplicationFactory

(

FNcbiApplicationFactory

f

)

operator bool() [1/2]

template<class TEnum >

CBoolEnum< TEnum >::operator bool ( void  ) const

inline

Operator bool.

Definition at line 317 of file ncbimisc.hpp.

References CBoolEnum< TEnum >::m_Value.

operator bool() [2/2]

CNcbiApplicationGuard::operator bool ( void  ) const

inline

Definition at line 114 of file ncbiapp_api.hpp.

References CNcbiApplicationGuard::m_App.

operator int()

template<class TEnum >

CBoolEnum< TEnum >::operator int ( ) const

private

operator std::string()

ncbi::CNcbiToolkit_LogMessage::operator std::string

(

void

)

const

Get the message the way it is formatted by the Toolkit.

operator TBoolType() [1/3]

template<class X , class Del = Deleter<X>>

AutoPtr< X, Del >::operator TBoolType ( ) const

inline

Definition at line 458 of file ncbimisc.hpp.

operator TBoolType() [2/3]

template<class X , class Del = ArrayDeleter<X>>

AutoArray< X, Del >::operator TBoolType ( ) const

inline

Definition at line 578 of file ncbimisc.hpp.

operator TBoolType() [3/3]

template<class Enum >

CSafeFlags< Enum >::operator TBoolType ( ) const

inline

Definition at line 1274 of file ncbimisc.hpp.

operator TEnum()

template<class TEnum >

CBoolEnum< TEnum >::operator TEnum ( ) const

inline

Operator enum.

Definition at line 319 of file ncbimisc.hpp.

References CBoolEnum< TEnum >::m_Value.

operator TValue()

template<class TValue , class TNullToValue = SThrowOnNull<TValue>>

CNullable< TValue, TNullToValue >::operator TValue ( void  ) const

inline

Get nullable value.

If NULL, then call TNullToValue and use the value return by the latter.

Attention

The default implementation of TNullToValue (g_ThrowOnNull) throws an exception!

Definition at line 695 of file ncbimisc.hpp.

operator unsigned int()

template<class TEnum >

CBoolEnum< TEnum >::operator unsigned int ( ) const

private

operator!()

bool CNcbiApplicationGuard::operator! ( void  ) const

inline

Definition at line 115 of file ncbiapp_api.hpp.

References CNcbiApplicationGuard::m_App.

operator!=() [1/7]

template<class TValue , class TNullToValue = SThrowOnNull<TValue>>

bool operator!=	(	const CNullable< TValue, TNullToValue > &	l,
		const CNullable< TValue, TNullToValue > &	r
	)

Definition at line 747 of file ncbimisc.hpp.

References operator==(), and r().

operator!=() [2/7]

template<class Enum >

bool CSafeFlags< Enum >::operator!= ( const CSafeFlags< Enum > &  b ) const

inline

Definition at line 1280 of file ncbimisc.hpp.

References b, and CSafeFlags< Enum >::get().

operator!=() [3/7]

template<class TKey , class TStorage >

bool CStrictId< TKey, TStorage >::operator!= ( const TThis &  id ) const

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 903 of file ncbimisc.hpp.

operator!=() [4/7]

template<class Enum >

bool CSafeFlags< Enum >::operator!= ( int  v ) const

inline

Definition at line 1289 of file ncbimisc.hpp.

References CSafeFlags< Enum >::get().

operator!=() [5/7]

template<class X , class Del = Deleter<X>>

bool AutoPtr< X, Del >::operator!= ( TBoolType  ) const

private

operator!=() [6/7]

template<class X , class Del = ArrayDeleter<X>>

bool AutoArray< X, Del >::operator!= ( TBoolType  ) const

private

operator!=() [7/7]

template<class Enum >

bool CSafeFlags< Enum >::operator!= ( TBoolType  ) const

private

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

operator&() [1/2]

template<class Enum >

CSafeFlags CSafeFlags< Enum >::operator& ( const CSafeFlags< Enum > &  b ) const

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1299 of file ncbimisc.hpp.

References b, CSafeFlags< Enum >::CSafeFlags(), and CSafeFlags< Enum >::get().

operator&() [2/2]

template<class E >

CSafeFlags<E> operator& ( E  a, CSafeFlags< E >  b  )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1363 of file ncbimisc.hpp.

References a, and b.

operator&=()

template<class Enum >

CSafeFlags& CSafeFlags< Enum >::operator&= ( const CSafeFlags< Enum > &  b )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1303 of file ncbimisc.hpp.

References b, and CSafeFlags< Enum >::m_Flags.

operator()() [1/2]

template<class TKey , class TStorage >

size_t hash< ncbi::CStrictId< TKey, TStorage > >::operator() ( const ncbi::CStrictId< TKey, TStorage > &  x ) const

inline

Definition at line 1540 of file ncbimisc.hpp.

operator()() [2/2]

template<class TValue >

TValue SThrowOnNull< TValue >::operator() ( void  ) const

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 658 of file ncbimisc.hpp.

References g_ThrowOnNull().

operator*() [1/4]

CNcbiApplicationAPI& CNcbiApplicationGuard::operator* ( void  )

inline

Definition at line 113 of file ncbiapp_api.hpp.

References CNcbiApplicationGuard::Get().

operator*() [2/4]

template<size_t KEmbeddedSize, class TType = char>

TType& CFastBuffer< KEmbeddedSize, TType >::operator* ( void  )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1176 of file ncbimisc.hpp.

References CFastBuffer< KEmbeddedSize, TType >::m_Buffer.

operator*() [3/4]

template<class X , class Del = Deleter<X>>

element_type& AutoPtr< X, Del >::operator* ( void  ) const

inline

Dereference operator.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 463 of file ncbimisc.hpp.

operator*() [4/4]

template<size_t KEmbeddedSize, class TType = char>

const TType& CFastBuffer< KEmbeddedSize, TType >::operator* ( void  ) const

inline

Definition at line 1177 of file ncbimisc.hpp.

References CFastBuffer< KEmbeddedSize, TType >::m_Buffer.

operator+() [1/3]

template<class TKey , class TStorage >

TThis CStrictId< TKey, TStorage >::operator+ ( const TThis &  id ) const

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 914 of file ncbimisc.hpp.

operator+() [2/3]

template<size_t KEmbeddedSize, class TType = char>

TType* CFastBuffer< KEmbeddedSize, TType >::operator+ ( size_t  offset )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1179 of file ncbimisc.hpp.

References CFastBuffer< KEmbeddedSize, TType >::m_Buffer, and offset.

operator+() [3/3]

template<size_t KEmbeddedSize, class TType = char>

const TType* CFastBuffer< KEmbeddedSize, TType >::operator+ ( size_t  offset ) const

inline

Definition at line 1180 of file ncbimisc.hpp.

References CFastBuffer< KEmbeddedSize, TType >::m_Buffer, and offset.

operator++() [1/2]

template<class TKey , class TStorage >

TThis CStrictId< TKey, TStorage >::operator++ ( int  )

inline

Definition at line 910 of file ncbimisc.hpp.

operator++() [2/2]

template<class TKey , class TStorage >

TThis& CStrictId< TKey, TStorage >::operator++ ( void  )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 909 of file ncbimisc.hpp.

operator-() [1/2]

template<class TKey , class TStorage >

TThis CStrictId< TKey, TStorage >::operator- ( const TThis &  id ) const

inline

Definition at line 915 of file ncbimisc.hpp.

operator-() [2/2]

template<class TKey , class TStorage >

TThis CStrictId< TKey, TStorage >::operator- ( void  ) const

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 916 of file ncbimisc.hpp.

operator--() [1/2]

template<class TKey , class TStorage >

TThis CStrictId< TKey, TStorage >::operator-- ( int  )

inline

Definition at line 912 of file ncbimisc.hpp.

operator--() [2/2]

template<class TKey , class TStorage >

TThis& CStrictId< TKey, TStorage >::operator-- ( void  )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 911 of file ncbimisc.hpp.

operator->() [1/2]

CNcbiApplicationAPI* CNcbiApplicationGuard::operator-> ( void  )

inline

Definition at line 112 of file ncbiapp_api.hpp.

References CNcbiApplicationGuard::Get().

operator->() [2/2]

template<class X , class Del = Deleter<X>>

element_type* AutoPtr< X, Del >::operator-> ( void  ) const

inline

Reference operator.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 466 of file ncbimisc.hpp.

operator<()

template<class TKey , class TStorage >

bool CStrictId< TKey, TStorage >::operator< ( const TThis &  id ) const

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 904 of file ncbimisc.hpp.

operator<<() [1/2]

template<class TKey , class TStorage >

CNcbiOstream& operator<< ( CNcbiOstream &  out, const CStrictId< TKey, TStorage > &  id  )

inline

Definition at line 946 of file ncbimisc.hpp.

References out().

operator<<() [2/2]

template<class E >

ostream& operator<< ( ostream &  out, const CSafeFlags< E > &  v  )

inline

Definition at line 1372 of file ncbimisc.hpp.

References CSafeFlags< Enum >::get(), and out().

operator<=()

template<class TKey , class TStorage >

bool CStrictId< TKey, TStorage >::operator<= ( const TThis &  id ) const

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 905 of file ncbimisc.hpp.

operator=() [1/10]

template<class X , class Del = ArrayDeleter<X>>

AutoArray<X, Del>& AutoArray< X, Del >::operator= ( const AutoArray< X, Del > &  p )

inline

Assignment operator.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 560 of file ncbimisc.hpp.

operator=() [2/10]

template<class X , class Del = Deleter<X>>

AutoPtr<X, Del>& AutoPtr< X, Del >::operator= ( const AutoPtr< X, Del > &  p )

inline

Assignment operator.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 440 of file ncbimisc.hpp.

operator=() [3/10]

CAction_Base& CNcbiActionGuard::CAction_Base::operator= ( const CAction_Base &  )

private

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

operator=() [4/10]

CNcbiActionGuard& CNcbiActionGuard::operator= ( const CNcbiActionGuard &  )

private

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

operator=() [5/10]

CNcbiToolkit_LogMessage& ncbi::CNcbiToolkit_LogMessage::operator= ( const CNcbiToolkit_LogMessage &  )

private

operator=() [6/10]

template<class TKey , class TStorage >

TThis& CStrictId< TKey, TStorage >::operator= ( const TThis &  other )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 900 of file ncbimisc.hpp.

operator=() [7/10]

template<class X , class Del = Deleter<X>>

AutoPtr<X, Del>& AutoPtr< X, Del >::operator= ( element_type *  p )

inline

Assignment operator.

Definition at line 451 of file ncbimisc.hpp.

operator=() [8/10]

template<class X , class Del = ArrayDeleter<X>>

AutoArray<X, Del>& AutoArray< X, Del >::operator= ( element_type *  p )

inline

Assignment operator.

Definition at line 571 of file ncbimisc.hpp.

operator=() [9/10]

template<class TValue , class TNullToValue = SThrowOnNull<TValue>>

CNullable& CNullable< TValue, TNullToValue >::operator= ( ENull  )

inline

Reset nullable to unassigned state.

Definition at line 729 of file ncbimisc.hpp.

operator=() [10/10]

template<class TValue , class TNullToValue = SThrowOnNull<TValue>>

CNullable& CNullable< TValue, TNullToValue >::operator= ( TValue  value )

inline

Assign a value to the nullable.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 722 of file ncbimisc.hpp.

operator==() [1/7]

template<class TValue , class TNullToValue = SThrowOnNull<TValue>>

bool operator==	(	const CNullable< TValue, TNullToValue > &	l,
		const CNullable< TValue, TNullToValue > &	r
	)

Definition at line 741 of file ncbimisc.hpp.

References CNullable< TValue, TNullToValue >::GetValue(), CNullable< TValue, TNullToValue >::IsNull(), and r().

Referenced by operator!=().

operator==() [2/7]

template<class Enum >

bool CSafeFlags< Enum >::operator== ( const CSafeFlags< Enum > &  b ) const

inline

Definition at line 1276 of file ncbimisc.hpp.

References b, and CSafeFlags< Enum >::get().

operator==() [3/7]

template<class TKey , class TStorage >

bool CStrictId< TKey, TStorage >::operator== ( const TThis &  id ) const

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 902 of file ncbimisc.hpp.

operator==() [4/7]

template<class Enum >

bool CSafeFlags< Enum >::operator== ( int  v ) const

inline

Definition at line 1285 of file ncbimisc.hpp.

References CSafeFlags< Enum >::get().

operator==() [5/7]

template<class X , class Del = Deleter<X>>

bool AutoPtr< X, Del >::operator== ( TBoolType  ) const

private

operator==() [6/7]

template<class X , class Del = ArrayDeleter<X>>

bool AutoArray< X, Del >::operator== ( TBoolType  ) const

private

operator==() [7/7]

template<class Enum >

bool CSafeFlags< Enum >::operator== ( TBoolType  ) const

private

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

operator>()

template<class TKey , class TStorage >

bool CStrictId< TKey, TStorage >::operator> ( const TThis &  id ) const

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 906 of file ncbimisc.hpp.

operator>=()

template<class TKey , class TStorage >

bool CStrictId< TKey, TStorage >::operator>= ( const TThis &  id ) const

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 907 of file ncbimisc.hpp.

operator>>()

template<class TKey , class TStorage >

CNcbiIstream& operator>> ( CNcbiIstream &  in, CStrictId< TKey, TStorage > &  id  )

inline

Definition at line 953 of file ncbimisc.hpp.

References in().

operator[]() [1/3]

template<class X , class Del = ArrayDeleter<X>>

element_type& AutoArray< X, Del >::operator[] ( size_t  pos )

inline

Array style dereference (returns reference)

Definition at line 594 of file ncbimisc.hpp.

operator[]() [2/3]

template<class X , class Del = ArrayDeleter<X>>

const element_type& AutoArray< X, Del >::operator[] ( size_t  pos ) const

inline

Array style dereference (returns value)

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 591 of file ncbimisc.hpp.

operator[]() [3/3]

template<size_t KEmbeddedSize, class TType = char>

TType CFastBuffer< KEmbeddedSize, TType >::operator[] ( size_t  pos ) const

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1174 of file ncbimisc.hpp.

References CFastBuffer< KEmbeddedSize, TType >::m_Buffer.

operator^() [1/2]

template<class Enum >

CSafeFlags CSafeFlags< Enum >::operator^ ( const CSafeFlags< Enum > &  b ) const

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1319 of file ncbimisc.hpp.

References b, CSafeFlags< Enum >::CSafeFlags(), and CSafeFlags< Enum >::get().

operator^() [2/2]

template<class E >

CSafeFlags<E> operator^ ( E  a, CSafeFlags< E >  b  )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1367 of file ncbimisc.hpp.

References a, and b.

operator^=()

template<class Enum >

CSafeFlags& CSafeFlags< Enum >::operator^= ( const CSafeFlags< Enum > &  b )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1323 of file ncbimisc.hpp.

References b, and CSafeFlags< Enum >::m_Flags.

operator|() [1/2]

template<class Enum >

CSafeFlags CSafeFlags< Enum >::operator| ( const CSafeFlags< Enum > &  b ) const

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1309 of file ncbimisc.hpp.

References b, CSafeFlags< Enum >::CSafeFlags(), and CSafeFlags< Enum >::get().

operator|() [2/2]

template<class E >

CSafeFlags<E> operator| ( E  a, CSafeFlags< E >  b  )

inline

Helper operators for safe-flags enums.

These operators will be used only for enums marked as safe-flag enums by macro DECLARE_SAFE_FLAGS()

Definition at line 1359 of file ncbimisc.hpp.

References a, and b.

operator|=()

template<class Enum >

CSafeFlags& CSafeFlags< Enum >::operator|= ( const CSafeFlags< Enum > &  b )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1313 of file ncbimisc.hpp.

References b, and CSafeFlags< Enum >::m_Flags.

operator~()

template<class Enum >

CSafeFlags CSafeFlags< Enum >::operator~ ( ) const

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1294 of file ncbimisc.hpp.

References CSafeFlags< Enum >::CSafeFlags(), and CSafeFlags< Enum >::get().

pair_base_member() [1/3]

template<class Base , class Member >

pair_base_member< Base, Member >::pair_base_member ( const first_type &  first_value, const second_type &  second_value  )

inlineexplicit

Definition at line 263 of file ncbimisc.hpp.

pair_base_member() [2/3]

template<class Base , class Member >

pair_base_member< Base, Member >::pair_base_member ( const member_type &  member_value )

inlineexplicit

Definition at line 258 of file ncbimisc.hpp.

pair_base_member() [3/3]

template<class Base , class Member >

pair_base_member< Base, Member >::pair_base_member ( void  )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 253 of file ncbimisc.hpp.

Post()

virtual void ncbi::INcbiToolkit_LogHandler::Post ( const CNcbiToolkit_LogMessage &  msg )

pure virtual

PreparseArgs()

CNcbiApplicationAPI::EPreparseArgs CNcbiApplicationAPI::PreparseArgs ( int  argc, const char *const *  argv  )

protectedvirtual

Check the command line arguments before parsing them.

See also

EPreparseArgs

Reimplemented in CNetStorageDApp, and CCgiApplication.

Definition at line 1299 of file ncbiapp.cpp.

References CNcbiApplicationAPI::ePreparse_Continue.

Referenced by CNcbiApplicationAPI::AppMain(), and CNetStorageDApp::PreparseArgs().

Print()

virtual void IPhoneHomePolicy::Print ( )

pure virtual

Print a message about collecting data, disablig tracking and privacy policies.

Implemented in CSamplePhoneHomePolicy.

release() [1/2]

template<class X , class Del = Deleter<X>>

element_type* AutoPtr< X, Del >::release ( void  )

inline

Release will release ownership of pointer to caller.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 472 of file ncbimisc.hpp.

Referenced by AascanTestFixture::AascanTestFixture(), CBAMDataLoader_Impl::AddSrzDef(), DTDParser::AttribBlock(), BOOST_AUTO_TEST_CASE(), CSeqTable_multi_data::ChangeToBit_bvector(), CSeqTable_sparse_index::ChangeToBit_set_bvector(), DTDParser::CompositeNode(), CompressedAascanTestFixture::CompressedAascanTestFixture(), CObjectIStream::Create(), CObjectIStream::CreateFromBuffer(), ASNParser::EnumeratedBlock(), CDataType::GenerateCode(), CChoiceDataType::GenerateCode(), CBitStringDataType::GetFullCType(), CIdlerWrapper::GetIdler(), CTL_RowResult::GetItemInternal(), CDataType::GetRefCType(), CSeqFeatData::GetRegulatoryClass(), CompressedAalookupTestFixture::GetSeqBlk(), AalookupTestFixture::GetSeqBlk(), GetSequenceProtein(), GetSequenceSingleNucleotideStrand(), CId2FetchApp::Init(), CNcbiTestApplication::Init(), CWig2tableApplication::MakeTable(), DTDParser::NillableBlock(), AutoPtr< CNcbistrstream_Base >::reset(), NtlookupTestFixture::SetUpQuery(), TestFixture::SetUpQuery(), NuclWordFinderTextFixture::setupSequences(), TestFixture::SetUpSubject(), SetupSubjects_OMF(), ASNParser::TypesBlock(), DTDParser::TypesBlock(), CPSGS_OSGProcessorBase::x_BGProcTokenToVoidP(), CBVector_data::x_CreateBitVector(), CHistogramBinning::x_IdentifyClusters(), CPssmEngine::x_InitializeScoreBlock(), CPkgManager::x_LoadPackage(), CDiagSyntaxParser::x_PutIntoFilter(), CPubseqReader::x_ReceiveData(), AutoPtr< CNcbistrstream_Base >::x_Release(), CPubseq2Reader::x_SendPacket(), CId2FetchApp::x_SendRequestPacket(), CHistogramBinning::x_TryForEvenBins(), and DTDParser::x_Type().

release() [2/2]

template<class X , class Del = ArrayDeleter<X>>

element_type* AutoArray< X, Del >::release ( void  )

inline

Release will release ownership of pointer to caller.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 584 of file ncbimisc.hpp.

Referenced by CCompressionStreambuf::CCompressionStreambuf(), AutoArray< CS_INT >::reset(), and AutoArray< CS_INT >::x_Release().

ReloadConfig()

bool CNcbiApplicationAPI::ReloadConfig ( CMetaRegistry::TFlags  flags = CMetaRegistry::fReloadIfChanged, IRegistry::TFlags  reg_flags = IRegistry::fWithNcbirc  )

inline

Reload the configuration file.

By default, does nothing if the file has the same size and date as before.

Note that this may lose other data stored in the registry!

Parameters

flags	Controls how aggressively to reload.
reg_flags	Flags to use when parsing the registry; ignored if the registry was already cached (as it should normally have been).

Returns

TRUE if a reload actually occurred.

Definition at line 801 of file ncbiapp_api.hpp.

References flags, CNcbiApplicationAPI::GetConfigPath(), CNcbiApplicationAPI::GetRWConfig(), and CMetaRegistry::Reload().

Referenced by BOOST_AUTO_TEST_CASE(), CAutoNcbiConfigFile::CAutoNcbiConfigFile(), CNetStorageHandler::x_ProcessReconfigure(), CNetScheduleHandler::x_ProcessReloadConfig(), and CAutoNcbiConfigFile::~CAutoNcbiConfigFile().

reset() [1/2]

template<class X , class Del = ArrayDeleter<X>>

void AutoArray< X, Del >::reset ( element_type *  p = 0 )

inline

Reset will delete the old pointer, set content to the new value, and assume the ownership upon the new pointer.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 598 of file ncbimisc.hpp.

Referenced by CArchiveMemory::Create(), CLZOCompression::InitCompression(), AutoArray< CS_INT >::operator=(), CSparseKmerCounts::Reset(), CLZOBuffer::ResetBuffer(), CStatementBase::x_GetData(), CSeqVector_CI::x_InitializeCache(), CBamString::x_reserve(), and AutoArray< CS_INT >::~AutoArray().

reset() [2/2]

template<class X , class Del = Deleter<X>>

void AutoPtr< X, Del >::reset ( element_type *  p = 0, EOwnership  ownership = eTakeOwnership  )

inline

Reset will delete the old pointer (if owned), set content to the new value, and assume the ownership upon the new pointer by default.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 480 of file ncbimisc.hpp.

Referenced by CSeqMaskerUsetHash::add_ht_info(), CSeqMaskerUsetHash::add_vt_info(), CBamUIDataSource::AddDataLoader(), CBAMDataLoader_Impl::AddSrzDef(), CAgpErrEx::CAgpErrEx(), CAutoEnvironmentVariable::CAutoEnvironmentVariable(), CBAMDataLoader_Impl::CBAMDataLoader_Impl(), CConnTest::CheckFWConnections(), CAsnSizer::CloseDataStream(), CSplitDataMaker::CloseDataStream(), CPagedFile::CPagedFile(), CProjectStorage::CProjectStorage(), CPtbRegistry::CPtbRegistry(), CTeeDiagHandler::CTeeDiagHandler(), CSeqMaskerOstatOpt::doFinalize(), CGffObjectLoader::Execute(), CConnTest::ExtraCheckOnFailure(), CDataType::GetAnyTypeInfo(), CBDB_BlobSplitStore< TBV, TObjDeMux, TL >::GetDb(), CValidator::CCacheImpl::GetFeatStrKeyToFeats(), CIdlerWrapper::GetIdler(), CTL_RowResult::GetItemInternal(), CDataTypeModule::GetNamespace(), CDataType::GetRealTypeInfo(), GetSequenceProtein(), GetSequenceSingleNucleotideStrand(), CBDB_BlobSplitStore< TBV, TObjDeMux, TL >::InitDbMutex(), CAlnVecRow::LoadDefaultTracks(), CGen_code_table::LoadTransTable(), CPipeHandle::Open(), CAsnSizer::OpenDataStream(), CSplitDataMaker::OpenDataStream(), CMSHit::operator=(), AutoPtr< CNcbistrstream_Base >::operator=(), CSeqVector::operator=(), SAnnotSelector::operator=(), CMSHit::RecordMatches(), CNcbiApplogApp::Redirect(), CBVector_data::Reset(), CBVector_data::ResetBitVector(), SAnnotSelector::ResetSourceLoc(), CGapStatsApplication::Run(), CWig2tableApplication::Run(), CSearch< LEGACY, NHITS >::Search(), CSQLITE_Blob::SetAppendStatement(), CBVector_data::SetBitVector(), CBDB_RawFile::SetCompressor(), CStringPairs< TExtraValuesMap >::SetDecoder(), CStringPairs< TExtraValuesMap >::SetEncoder(), CIdlerWrapper::SetIdler(), CBamDb::SetIdMapper(), CLoadLockSetter::SetLoaded(), CMergeVolumes::SetMergeAccumulator(), CMergeVolumes::SetMergeStore(), CMSPeakList::SetMZI(), CMessageListenerBase::SetProgressOstream(), CDisplaySeqalign::SetSequencePropertyLabel(), SAnnotSelector::SetSourceLoc(), CSplitCacheApp::SetupCache(), CFastaOstream::SetWidth(), CAlignCompare::SAlignment::Slice(), CSplitCacheApp::TestSplit(), CSDBAPI::UpdateMirror(), CSQLITE_Blob::Write(), x_AdjustAnchorDirection(), CBVector_data::x_CreateBitVector(), CSGAlignmentJob::x_CreateFeatGlyph(), CSeqVector::x_CreateIterator(), CAlnVecRow::x_CreateTrackPanel(), CId1Reader::x_DisconnectAtSlot(), CId2Reader::x_DisconnectAtSlot(), CPubseqReader::x_DisconnectAtSlot(), CPubseq2Reader::x_DisconnectAtSlot(), CArchive::x_ExtractEntry(), CPsiBlastInputClustalW::x_ExtractQueryFromMsa(), CPubseq2Reader::x_GetConnection(), CLDS2_Database::x_GetStatement(), CLoadLockSetter::x_Init(), CId2FetchApp::x_InitConnection(), CGen_code_table::x_InitImplementation(), CBlastFastaInputSource::x_InitInputReader(), CId2FetchApp::x_InitPubSeqConnection(), CFileLoader::x_LoadGff(), CHTMLPage::x_LoadTemplateLib(), CRegexpTemplateTester::x_Op_Skip(), CPdfObject::x_PrintTo(), CId2FetchApp::x_ProcessData(), CTar::x_ProcessEntry(), CXcompareAnnotsApplication::x_ProcessSeqAlignSetFromFile(), CPubseqReader::x_ReceiveData(), CSeqVector::x_ResetIterator(), CAlnVecRow::x_ResetTrackPanel(), CDBLBClientApp::x_RunWhatIs(), CId2FetchApp::x_SendRequestPacket(), and AutoPtr< CNcbistrstream_Base >::~AutoPtr().

Restore()

virtual void IPhoneHomePolicy::Restore ( )

pure virtual

Restore policy configuration.

Implemented in CSamplePhoneHomePolicy.

Run()

virtual int CNcbiApplicationAPI::Run ( void  )

pure virtual

Run the application.

It is defined as a pure virtual method – so you must(!) supply the Run() method to implement the application-specific logic.

Returns

Exit code.

Implemented in CSubImageApp, CImageDemoApp, CConvImageApp, CCacheDemoApp, CBam2GraphApp, CDataTool, CSampleLibtestApplication, CSampleSoapClientApplication, CSeqAnnotSplicerApp, CProcessHighestSeObjs, CBssInfoApp, CDemoApp, CDemoApp, CDemoApp, CSdbapiSimpleApp, CSampleObjmgrApplication, CFeatTreeSampleApp, CEditBioseqSampleApp, CSampleObjectsApplication, CRemoteAppClientSampleApp, CSampleNetScheduleNode, CSampleNetScheduleClient, CGridClientSampleApp, CSampleNetCacheClient, CMultiCommandApplication, CSampleLds2Application, CHttpSessionApp, CEUtilsApp, CDbCopyApp, CDbapiSimpleApp, VSRunSampleApplication, CBlastDemoApplication, CBlastSampleApplication, CBlastDemoApplication, CSampleBasicApplication, CSampleAsnApplication, CSampleAlnmgrApplication, CFetchGBProjectApp, CAce2AsnApp, CProcessFilesApp, CReadFilesApp, ASNIOTestApp, CAlnVwrApp, CAlnMrgApp, CAlnTestApp, CAlnBuildApp, CClientGenomicCollectionsSvcApplication, CEntrez2ClientApp, CDemoApplication, CColumnarVCFReaderApp, CMakeScoreMethodApp, CTestDispatchApp, CAppJobTestApplication, CTestBMApp, CObjConvProfile, CTestApplication, COdbcSpwhoDemoApp, COcbdDemoApp, CMysqlDemoApp, CRunTestApplication, CRunTestApplication, CBDB_MergeTest, CBDB_SplitTest, CBDB_FileDumperApp, CBDB_BLobDemo1, CBDB_PhoneBookDemo3, CBDB_PhoneBookDemo2, CBDB_PhoneBookDemo1, CBDB_CacheVerifyApp, CNcbiTestApplication, CNcbiToolkitImpl_Application, CPsgPerfApplication, CProjBulderApp, CWinMaskApplication, CWig2tableApplication, subfuse::CSubfuseApp, CStreamTestApp, CSplitCacheApp, CMytestApplication, SegMaskerApplication, CReadBlastApp, CDemoApp, CDemoApp, CObjExtractApp, CNmer_repeatsApplication, CNetStorageGCApp, CNetStorageDApp, CNetScheduleDApp, CNcbiEncryptApp, CMultipatternApp, CIdfetchApplication, CId2FetchApp, CId1FetchApp, CId1FetchApp, CHgvsToSeqfeatConverter, CGi2TaxIdApp, CGffDeconcatApp, CGapStatsApplication, CFormatGuessApp, CFeatImportApp, CDustMaskApplication, CDBLBClientApp, CConversionApp, CCompartApplication, Cn3DNoWin, CBsDiffApp, CVDBTblastnApp, CVDBBlastnApp, CGuideTreeApplication, CConvert2BlastMaskApplication, BlastdbCopyApplication, CBlastDbCheckApplication, CBiosampleChkApp, CBDBEnvKeeperApp, CWalkAsnCacheApplication, CAsnSubCacheCreateApplication, CReadIndexSpeedApp, CPrimeCacheApplication, CAsnCacheDumpSeqIdsApplication, CConcatSeqEntriesApplication, CCacheIndexCopyApp, CAsnCacheTestApplication, CTest, CAsn2Asn, CAgpconvertApplication, CAgpValidateApplication, CWinMaskDemoApplication, CXcompareAnnotsApplication, CRegexpLocApp, CGeneModelDemoApp, CCpGDemoApp, CAdapterSearchApplication, COmssa2pepxmlApplication, CLocalFinderApp, CMultiApplication, CMultiApplication, CClustererApplication, CBlastKmerBuildIndexApplication, CBlastKmerApplication, CCkblastindexApplication, CGumbelParamsApplication, CBlastInputDemoApplication, CDemoScoreBuilderApp, CTestCompartApplication, CAlignCleanupApplication, CAVApp, CRemoteCgiApp, CNCBIwxApplication, CThreadedApp, CGridWorkerApp, CCgiApplication, COMSSABase, CTestRemoteUpdaterApplication, CPubmedFetchApplication, CPubmedFetchApplication, CTbl2AsnApp, pub_report::CPubReportApp, CPrt2FsmApp, CMultiReaderApp, CDiscRepApp, CAsnvalApp, CCleanupApp, CAsn2FlatApp, CAsn2FastaApp, CAnnotWriterApp, CSdbapiTest, CDbapiTest, CUsageReportPhoneHomeSampleApp, CUsageReportSampleApp, CAnalyzeShiftApp, CHugeFileDemoApp, CTax4BlastDemo, CNcbiApplogApp, CGBProjectTool, CTestGuiRegistryApp, CDbapiSampleApp, CDbapiDriverSampleApp, CVecScreenApp, seqsubmit_split::CSeqSubSplitter, CSrcChkApp, CSplignApp, CRMBlastnApp, CPsgClientApp, CAppNWA, CMagicBlastApp, CIgBlastpApp, CIgBlastnApp, CIdMapperApp, CAppHitFilter, CComponentIDToolApp, CGridCommandLineInterfaceApp, CExonSelectorApplication, CCompactSAMApplication, CCompartApp, CBlastVdbCmdApp, CBlastFormatterVdbApp, CMakeProfileDBApp, CMakeClusterDBApp, CMakeBlastDBApp, CBlastDBCmdApp, CBlastDBCmdApp, CBlastdbConvertApp, CBlastDBAliasApp, CTblastxApp, CTblastnApp, CSeedTopApp, CRPSTBlastnApp, CRPSBlastApp, CPsiBlastApp, CDeltaBlastApp, CBlastxApp, CBlastpApp, CBlastnApp, CBlastFormatterApp, CDemoSeqQaApp, COMSSAMerge, COMSSA, CReadresult, CSRSearchApplication, CMkIndexApplication, CProSplignApp, CNgAlignApp, CMergeyApp, and CDemoContigAssemblyApp.

Referenced by CNcbiApplicationAPI::x_TryMain().

RunIdler()

void RunIdler

(

void

)

Execute currently installed idler if any.

Definition at line 1851 of file ncbiapp.cpp.

References s_IdlerWrapper.

Referenced by CFastCgiApplicationMT::x_ProcessThreadedRequest().

s_ITERATE_ConstRef()

template<typename Type >

const Type& s_ITERATE_ConstRef ( const Type &  obj )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 787 of file ncbimisc.hpp.

s_ITERATE_SameObject()

template<typename Type >

bool s_ITERATE_SameObject ( const Type &  obj1, const Type &  obj2  )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 796 of file ncbimisc.hpp.

SafeBoolTrue() [1/3]

template<class X , class Del = Deleter<X>>

void AutoPtr< X, Del >::SSafeBoolTag::SafeBoolTrue ( SSafeBoolTag *  )

inline

Definition at line 458 of file ncbimisc.hpp.

SafeBoolTrue() [2/3]

template<class X , class Del = ArrayDeleter<X>>

void AutoArray< X, Del >::SSafeBoolTag::SafeBoolTrue ( SSafeBoolTag *  )

inline

Definition at line 578 of file ncbimisc.hpp.

SafeBoolTrue() [3/3]

template<class Enum >

void CSafeFlags< Enum >::SSafeBoolTag::SafeBoolTrue ( SSafeBoolTag *  )

inline

Definition at line 1274 of file ncbimisc.hpp.

Save()

virtual void IPhoneHomePolicy::Save ( )

pure virtual

Save policy configuration.

Implemented in CSamplePhoneHomePolicy.

second() [1/2]

template<class Base , class Member >

second_type& pair_base_member< Base, Member >::second ( )

inline

Definition at line 282 of file ncbimisc.hpp.

second() [2/2]

template<class Base , class Member >

const second_type& pair_base_member< Base, Member >::second ( ) const

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 278 of file ncbimisc.hpp.

Referenced by CConstRef< CSeq_loc >::AtomicResetFrom(), CRef< CAlnMixSegment >::AtomicResetFrom(), CRef< CAlnMixSegment >::AtomicSwap(), CConstRef< CSeq_loc >::AtomicSwap(), CStaticArraySearchBase< NStaticArray::PKeyValuePair< SStaticPair< KeyType, ValueType > >, less< KeyType > >::begin(), CRef< CAlnMixSegment >::Empty(), CConstRef< CSeq_loc >::Empty(), CRef< CAlnMixSegment >::GetNCPointerOrNull(), CRef< CAlnMixSegment >::GetNonNullNCPointer(), CRef< CAlnMixSegment >::GetNonNullPointer(), CConstRef< CSeq_loc >::GetNonNullPointer(), CConstRef< CSeq_loc >::GetPointerOrNull(), CRef< CAlnMixSegment >::GetPointerOrNull(), CGuard< IRegistry, SSimpleReadLock< IRegistry > >::GetResource(), CGuard< IRegistry, SSimpleReadLock< IRegistry > >::GetUnlock(), CBlobIdFor< Value, Converter >::GetValue(), CRef< CAlnMixSegment >::IsNull(), CConstRef< CSeq_loc >::IsNull(), AutoPtr< CNcbistrstream_Base >::IsOwned(), CRef< CAlnMixSegment >::NotEmpty(), CConstRef< CSeq_loc >::NotEmpty(), CRef< CAlnMixSegment >::NotNull(), CConstRef< CSeq_loc >::NotNull(), CRef< CAlnMixSegment >::operator!(), CConstRef< CSeq_loc >::operator!(), AutoArray< CS_INT >::operator=(), AutoPtr< CNcbistrstream_Base >::operator=(), CRef< CAlnMixSegment >::operator=(), CConstRef< CSeq_loc >::operator=(), AutoPtr< CNcbistrstream_Base >::release(), AutoArray< CS_INT >::release(), CRef< CAlnMixSegment >::Release(), CConstRef< CSeq_loc >::Release(), CRef< CAlnMixSegment >::ReleaseOrNull(), CConstRef< CSeq_loc >::ReleaseOrNull(), AutoArray< CS_INT >::reset(), AutoPtr< CNcbistrstream_Base >::reset(), CRef< CAlnMixSegment >::Reset(), CConstRef< CSeq_loc >::Reset(), pair_base_member< TKeyGetter, CTreeNode * >::Swap(), CRef< CAlnMixSegment >::Swap(), CConstRef< CSeq_loc >::Swap(), CBlobIdFor< Value, Converter >::ToString(), CRef< CAlnMixSegment >::x_AssignFromRef(), CConstRef< CSeq_loc >::x_AssignFromRef(), CRef< CAlnMixSegment >::x_LockFromMoveConstructor(), CConstRef< CSeq_loc >::x_LockFromMoveConstructor(), CRef< CAlnMixSegment >::x_LockFromPtr(), CConstRef< CSeq_loc >::x_LockFromPtr(), CRef< CAlnMixSegment >::x_LockFromRef(), CConstRef< CSeq_loc >::x_LockFromRef(), CRef< CAlnMixSegment >::x_MoveAssign(), CConstRef< CSeq_loc >::x_MoveAssign(), CStaticArraySearchBase< NStaticArray::PKeyValuePair< SStaticPair< KeyType, ValueType > >, less< KeyType > >::x_Set(), and CStaticArraySearchBase< NStaticArray::PKeyValuePair< SStaticPair< KeyType, ValueType > >, less< KeyType > >::~CStaticArraySearchBase().

Set() [1/2]

template<class TKey , class TStorage >

void CStrictId< TKey, TStorage >::Set ( TId  id )

inline

Definition at line 922 of file ncbimisc.hpp.

Referenced by CObjectIStream::ReadGi().

Set() [2/2]

template<class TKey , class TStorage >

TId& CStrictId< TKey, TStorage >::Set ( void  )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 923 of file ncbimisc.hpp.

SetAppFlags()

void CNcbiApplicationAPI::SetAppFlags ( TAppFlags  flags )

inlineprotected

Definition at line 620 of file ncbiapp_api.hpp.

References flags, and CNcbiApplicationAPI::m_AppFlags.

Referenced by CNcbiTestApplication::InitTestFramework().

SetEnabled()

virtual void IPhoneHomePolicy::SetEnabled ( bool  enabled = true )

inlinevirtual

Set policy status (enabbed/disabled).

Definition at line 101 of file phone_home_policy.hpp.

References IPhoneHomePolicy::m_IsEnabled.

Referenced by CSamplePhoneHomePolicy::Apply().

SetEnvironment() [1/2]

void CNcbiApplicationAPI::SetEnvironment	(	const string &	name,
		const string &	value
	)

Set a specified environment variable by name.

Definition at line 1126 of file ncbiapp.cpp.

References CNcbiEnvironment::Set(), CNcbiApplicationAPI::SetEnvironment(), and rapidjson::value.

SetEnvironment() [2/2]

CNcbiEnvironment & CNcbiApplicationAPI::SetEnvironment ( void  )

inline

Get a non-const copy of the application's cached environment.

Definition at line 765 of file ncbiapp_api.hpp.

References CNcbiApplicationAPI::m_Environ.

Referenced by BOOST_AUTO_TEST_CASE(), CAutoEnvironmentVariable::CAutoEnvironmentVariable(), CEnvironmentCleaner::Clean(), CCgi2RCgiApp::CreateContextWithFlags(), CSeqEditPackage::Init(), CSeqTestApplication::Init(), CVDBBlastnApp::Init(), CVDBTblastnApp::Init(), CNetStorageDApp::Init(), CPipeHandle::Open(), CCgi2RCgiApp::ProcessRequest(), CRunTestApplication::Run(), s_TestReadPDBAsn1(), CNcbiApplicationAPI::SetEnvironment(), CNcbiRegistry::x_Init(), CAlnMultiCGIApplication::x_PreProcess(), and CSeqEditPackage::x_UpdateValAuxFile().

SetExitCode()

void CNcbiApplicationAPI::SetExitCode ( int  exit_code, EExitMode  when = eExceptionalExits  )

protected

Force the program to return a specific exit code later, either when it exits due to an exception or unconditionally.

In the latter case, Run's return value will be ignored.

Definition at line 1767 of file ncbiapp.cpp.

References CNcbiApplicationAPI::m_ExitCode, and CNcbiApplicationAPI::m_ExitCodeCond.

SetFullVersion()

void CNcbiApplicationAPI::SetFullVersion ( CRef< CVersionAPI >  version )

protected

Set version data for the program.

Note

This function should be used from constructor of CNcbiApplicationAPI derived class, otherwise command-like arguments "-version" and "-version-full" will not work as expected.

See also

GetVersion

Definition at line 1174 of file ncbiapp.cpp.

References ERR_POST_X, CNcbiApplicationAPI::m_Version, CRef< C, Locker >::Reset(), s_IsApplicationStarted, and version.

Referenced by BlastdbCopyApplication::BlastdbCopyApplication(), CBlastDBAliasApp::CBlastDBAliasApp(), CBlastDbCheckApplication::CBlastDbCheckApplication(), CBlastDBCmdApp::CBlastDBCmdApp(), CBlastdbConvertApp::CBlastdbConvertApp(), CBlastFormatterApp::CBlastFormatterApp(), CBlastFormatterVdbApp::CBlastFormatterVdbApp(), CBlastnApp::CBlastnApp(), CBlastpApp::CBlastpApp(), CBlastVdbCmdApp::CBlastVdbCmdApp(), CBlastxApp::CBlastxApp(), CConvert2BlastMaskApplication::CConvert2BlastMaskApplication(), CDeltaBlastApp::CDeltaBlastApp(), CDustMaskApplication::CDustMaskApplication(), CGumbelParamsApplication::CGumbelParamsApplication(), CIgBlastnApp::CIgBlastnApp(), CIgBlastpApp::CIgBlastpApp(), CMagicBlastApp::CMagicBlastApp(), CMakeBlastDBApp::CMakeBlastDBApp(), CMakeClusterDBApp::CMakeClusterDBApp(), CMakeProfileDBApp::CMakeProfileDBApp(), CMultiApplication::CMultiApplication(), CNetScheduleDApp::CNetScheduleDApp(), CNetStorageDApp::CNetStorageDApp(), CNetStorageGCApp::CNetStorageGCApp(), CPsiBlastApp::CPsiBlastApp(), CRMBlastnApp::CRMBlastnApp(), CRPSBlastApp::CRPSBlastApp(), CRPSTBlastnApp::CRPSTBlastnApp(), CSeedTopApp::CSeedTopApp(), CSplignApp::CSplignApp(), CTblastnApp::CTblastnApp(), CTblastxApp::CTblastxApp(), CVDBBlastnApp::CVDBBlastnApp(), CVDBTblastnApp::CVDBTblastnApp(), CVecScreenApp::CVecScreenApp(), CWinMaskApplication::CWinMaskApplication(), and SegMaskerApplication::SegMaskerApplication().

SetIdler()

void SetIdler	(	INcbiIdler *	idler,
		EOwnership	ownership = eTakeOwnership
	)

Set new idler and ownership.

Definition at line 1845 of file ncbiapp.cpp.

References s_IdlerWrapper.

SetPhoneHomePolicy()

void CNcbiApplicationAPI::SetPhoneHomePolicy ( IPhoneHomePolicy *  policy, ENcbiOwnership  ownership = eNoOwnership  )

protected

Set Phone Home Policy.

• To activate a new policy this method can be used in the application's Init(), after setting up a command line arguments, or as soon as possible in the Run().
• To deactivate current policy and cleanup, it can be used at the end of Run(), or in the application's Exit() with the NULL argument.

  Parameters

  policy	Pointer to new Phone Home policy. NULL - delete current policy without a setting new one. If you have active policy, it automatically calls Finish() for the previously set policy, if any.
  ownership	Phone Home policy ownership.

  See also

  GetPhoneHomePolicy(), IPhoneHomePolicy

Definition at line 212 of file ncbiapp.cpp.

References IPhoneHomePolicy::Apply(), eTakeOwnership, IPhoneHomePolicy::Finish(), CNcbiApplicationAPI::m_PhoneHomePolicy, and CNcbiApplicationAPI::m_PhoneHomePolicy_Ownership.

SetProgramDisplayName()

void CNcbiApplicationAPI::SetProgramDisplayName ( const string &  app_name )

protected

Set program's display name.

Set up application name suitable for display or as a basename for other files. It can also be set by the user when calling AppMain().

Definition at line 1366 of file ncbiapp.cpp.

References ctll::empty(), CNcbiApplicationAPI::GetAppName(), GetDiagContext(), CNcbiApplicationAPI::m_ProgramDisplayName, and CDiagContext::SetAppName().

Referenced by CNcbiApplicationAPI::AppMain().

SetStdioFlags()

void CNcbiApplicationAPI::SetStdioFlags ( TStdioSetupFlags  stdio_flags )

protected

Adjust the behavior of standard I/O streams.

Unless this function is called, the behaviour of "C++" Cin/Cout/Cerr streams will be the same regardless of the compiler used.

IMPLEMENTATION NOTE: Do not call this function more than once and from places other than App's constructor.

Definition at line 1318 of file ncbiapp.cpp.

References _ASSERT, and CNcbiApplicationAPI::m_StdioFlags.

Referenced by CCgiApplication::CCgiApplication().

SetupArgDescriptions()

void CNcbiApplicationAPI::SetupArgDescriptions ( CArgDescriptions *  arg_desc )

protectedvirtual

Setup the command line argument descriptions.

Call from the Init() method. The passed "arg_desc" will be owned by this class, and it will be deleted by ~CNcbiApplicationAPI(), or if SetupArgDescriptions() is called again.

Reimplemented in CRemoteCgiApp, CGridWorkerApp, and CCgiApplication.

Definition at line 1195 of file ncbiapp.cpp.

References CArgDescriptions::CreateArgs(), CNcbiApplicationAPI::GetArguments(), CNcbiApplicationAPI::m_ArgDesc, CNcbiApplicationAPI::m_Args, CNcbiApplicationAPI::m_DefaultConfig, and CNcbiApplicationAPI::m_DisableArgDesc.

Referenced by CDemoContigAssemblyApp::Init(), CNgAlignApp::Init(), CSRSearchApplication::Init(), CReadresult::Init(), COMSSABase::Init(), COMSSAMerge::Init(), CDemoSeqQaApp::Init(), CBlastFormatterApp::Init(), CBlastnApp::Init(), CBlastpApp::Init(), CBlastxApp::Init(), CDeltaBlastApp::Init(), CPsiBlastApp::Init(), CRPSBlastApp::Init(), CRPSTBlastnApp::Init(), CSeedTopApp::Init(), CTblastnApp::Init(), CTblastxApp::Init(), CBlastDBAliasApp::Init(), CBlastdbConvertApp::Init(), CBlastDBCmdApp::Init(), CMakeBlastDBApp::Init(), CMakeClusterDBApp::Init(), CBlastFormatterVdbApp::Init(), CBlastVdbCmdApp::Init(), CCompartApp::Init(), CCompactSAMApplication::Init(), CExonSelectorApplication::Init(), CAppHitFilter::Init(), CIdMapperApp::Init(), CIgBlastnApp::Init(), CIgBlastpApp::Init(), CMagicBlastApp::Init(), CAppNWA::Init(), CPsgClientApp::Init(), CRMBlastnApp::Init(), CSplignApp::Init(), CSrcChkApp::Init(), seqsubmit_split::CSeqSubSplitter::Init(), CVecScreenApp::Init(), CDbapiDriverSampleApp::Init(), CDbapiSampleApp::Init(), CTestGuiRegistryApp::Init(), CGBProjectTool::Init(), CNcbiApplogApp::Init(), CTax4BlastDemo::Init(), CHugeFileDemoApp::Init(), CDbapiTest::Init(), CSdbapiTest::Init(), CAnnotWriterApp::Init(), CAsn2FastaApp::Init(), CAsn2FlatApp::Init(), CCleanupApp::Init(), CDiscRepApp::Init(), CMultiReaderApp::Init(), pub_report::CPubReportApp::Init(), CPubmedFetchApplication::Init(), CTestRemoteUpdaterApplication::Init(), CThreadedApp::Init(), CAVApp::Init(), CAlignCleanupApplication::Init(), CMergeyApp::Init(), CProSplignApp::Init(), CTestCompartApplication::Init(), CDemoScoreBuilderApp::Init(), CBlastInputDemoApplication::Init(), CGumbelParamsApplication::Init(), CCkblastindexApplication::Init(), CBlastKmerApplication::Init(), CBlastKmerBuildIndexApplication::Init(), CClustererApplication::Init(), CMultiApplication::Init(), CLocalFinderApp::Init(), COmssa2pepxmlApplication::Init(), CAdapterSearchApplication::Init(), CCpGDemoApp::Init(), CGeneModelDemoApp::Init(), CRegexpLocApp::Init(), CXcompareAnnotsApplication::Init(), CWinMaskDemoApplication::Init(), CAgpValidateApplication::Init(), CAgpconvertApplication::Init(), CAsnCacheTestApplication::Init(), CCacheIndexCopyApp::Init(), CConcatSeqEntriesApplication::Init(), CAsnCacheDumpSeqIdsApplication::Init(), CPrimeCacheApplication::Init(), CReadIndexSpeedApp::Init(), CAsnSubCacheCreateApplication::Init(), CWalkAsnCacheApplication::Init(), CBDBEnvKeeperApp::Init(), CBiosampleChkApp::Init(), CBlastDbCheckApplication::Init(), BlastdbCopyApplication::Init(), CConvert2BlastMaskApplication::Init(), CGuideTreeApplication::Init(), CVDBBlastnApp::Init(), CVDBTblastnApp::Init(), Cn3DNoWin::Init(), CCompartApplication::Init(), CConversionApp::Init(), CDBLBClientApp::Init(), CDustMaskApplication::Init(), CFeatImportApp::Init(), CFormatGuessApp::Init(), CGapStatsApplication::Init(), CGffDeconcatApp::Init(), CGi2TaxIdApp::Init(), CHgvsToSeqfeatConverter::Init(), CId1FetchApp::Init(), CId2FetchApp::Init(), CIdfetchApplication::Init(), CMultipatternApp::Init(), CNcbiEncryptApp::Init(), CNetScheduleDApp::Init(), CNetStorageDApp::Init(), CNetStorageGCApp::Init(), CNmer_repeatsApplication::Init(), CObjExtractApp::Init(), CDemoApp::Init(), CReadBlastApp::Init(), SegMaskerApplication::Init(), CMytestApplication::Init(), CSplitCacheApp::Init(), CStreamTestApp::Init(), subfuse::CSubfuseApp::Init(), CWig2tableApplication::Init(), CWinMaskApplication::Init(), CProjBulderApp::Init(), CPsgPerfApplication::Init(), CNcbiTestApplication::Init(), CBDB_CacheVerifyApp::Init(), CBDB_PhoneBookDemo1::Init(), CBDB_PhoneBookDemo2::Init(), CBDB_PhoneBookDemo3::Init(), CBDB_BLobDemo1::Init(), CBDB_FileDumperApp::Init(), CBDB_SplitTest::Init(), CBDB_MergeTest::Init(), CRunTestApplication::Init(), CMysqlDemoApp::Init(), CTestApplication::Init(), CObjConvProfile::Init(), CAppJobTestApplication::Init(), CTestDispatchApp::Init(), CMakeScoreMethodApp::Init(), CColumnarVCFReaderApp::Init(), CEntrez2ClientApp::Init(), CAlnMrgApp::Init(), CAlnVwrApp::Init(), CReadFilesApp::Init(), CProcessFilesApp::Init(), CFetchGBProjectApp::Init(), CSampleAlnmgrApplication::Init(), CSampleAsnApplication::Init(), CSampleBasicApplication::Init(), CBlastDemoApplication::Init(), CBlastSampleApplication::Init(), VSRunSampleApplication::Init(), CDbapiSimpleApp::Init(), CEUtilsApp::Init(), CHttpSessionApp::Init(), CSampleLds2Application::Init(), CMultiCommandApplication::Init(), CSampleNetCacheClient::Init(), CGridClientSampleApp::Init(), CSampleNetScheduleClient::Init(), CSampleNetScheduleNode::Init(), CRemoteAppClientSampleApp::Init(), CSampleObjectsApplication::Init(), CEditBioseqSampleApp::Init(), CFeatTreeSampleApp::Init(), CSampleObjmgrApplication::Init(), CSdbapiSimpleApp::Init(), CBssInfoApp::Init(), CProcessHighestSeObjs::Init(), CSeqAnnotSplicerApp::Init(), CSampleSoapClientApplication::Init(), CSampleLibtestApplication::Init(), CDataTool::Init(), CBam2GraphApp::Init(), CConvImageApp::Init(), CImageDemoApp::Init(), CSubImageApp::Init(), CCgiApplication::SetupArgDescriptions(), CGridWorkerApp::SetupArgDescriptions(), CNCBIwxApplication::x_SetupArgDescriptions(), CTestBMApp::x_SetupArgDescriptions(), CMakeProfileDBApp::x_SetupArgDescriptions(), and CNcbiApplicationAPI::x_TryInit().

SetupDiag()

bool CNcbiApplicationAPI::SetupDiag ( EAppDiagStream  diag )

protected

Setup the application diagnostic stream.

Returns

TRUE if successful, FALSE otherwise.

Deprecated:

Definition at line 1212 of file ncbiapp.cpp.

References eDCM_Flush, CNcbiApplicationAPI::m_LogFile, and CDiagContext::SetupDiag().

SetupDiag_AppSpecific()

bool CNcbiApplicationAPI::SetupDiag_AppSpecific ( void  )

virtual

Setup application specific diagnostic stream.

Called from SetupDiag when it is passed the eDS_AppSpecific parameter. Currently, this calls SetupDiag(eDS_ToStderr) to setup diagonistic stream to the std error channel.

Returns

TRUE if successful, FALSE otherwise.

Deprecated:

Definition at line 1219 of file ncbiapp.cpp.

References eDCM_Flush, eDS_ToStderr, CNcbiApplicationAPI::m_LogFile, and CDiagContext::SetupDiag().

SetValue()

template<class TValue , class TNullToValue = SThrowOnNull<TValue>>

TValue& CNullable< TValue, TNullToValue >::SetValue ( void  )

inline

Get a non-const reference to the value.

If NULL, try to initialize this instance with the default value or throw.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 713 of file ncbimisc.hpp.

SetVersion() [1/2]

void CNcbiApplicationAPI::SetVersion ( const CVersionInfo &  version )

protected

Set the version number for the program.

If not set, a default of 0.0.teamcity_build_number is used.

Note

This function should be used from constructor of CNcbiApplicationAPI derived class, otherwise command-like arguments "-version" and "-version-full" will not work as expected.

See also

GetVersion, NCBI_APP_SET_VERSION, NCBI_APP_SET_VERSION_AUTO

Definition at line 1155 of file ncbiapp.cpp.

References ERR_POST_X, CNcbiApplicationAPI::m_Version, s_IsApplicationStarted, CVersionAPI::SetVersionInfo(), and version.

Referenced by CAgpValidateApplication::CAgpValidateApplication(), CAsn2FastaApp::CAsn2FastaApp(), CAsn2FlatApp::CAsn2FlatApp(), CCleanupApp::CCleanupApp(), CDataTool::CDataTool(), CDiscRepApp::CDiscRepApp(), CGridWorkerApp::CGridWorkerApp(), CMultiReaderApp::CMultiReaderApp(), CNetScheduleDApp::CNetScheduleDApp(), CNetStorageDApp::CNetStorageDApp(), CNetStorageGCApp::CNetStorageGCApp(), COmssa2pepxmlApplication::COmssa2pepxmlApplication(), COMSSABase::COMSSABase(), COMSSAMerge::COMSSAMerge(), CProjBulderApp::CProjBulderApp(), CPubmedFetchApplication::CPubmedFetchApplication(), pub_report::CPubReportApp::CPubReportApp(), subfuse::CSubfuseApp::CSubfuseApp(), and CTestRemoteUpdaterApplication::CTestRemoteUpdaterApplication().

SetVersion() [2/2]

void CNcbiApplicationAPI::SetVersion ( const CVersionInfo &  version, const SBuildInfo &  build_info  )

protected

Definition at line 1164 of file ncbiapp.cpp.

References ERR_POST_X, CNcbiApplicationAPI::m_Version, s_IsApplicationStarted, CVersionAPI::SetVersionInfo(), and version.

SetVersionByBuild()

void CNcbiApplicationAPI::SetVersionByBuild ( int  major )

protected

Definition at line 1148 of file ncbiapp.cpp.

References CNcbiApplicationAPI::m_Version, NCBI_SC_VERSION_PROXY, NCBI_TEAMCITY_BUILD_NUMBER_PROXY, and CVersionAPI::SetVersionInfo().

Severity()

CNcbiToolkit_LogMessage::ESeverity CNcbiToolkit_LogMessage::Severity

(

void

)

const

Get message severity.

Definition at line 86 of file ncbi_toolkit.cpp.

References ncbi::CNcbiToolkit_LogMessage::eCritical, eDiag_Critical, eDiag_Error, eDiag_Fatal, eDiag_Info, eDiag_Trace, eDiag_Warning, ncbi::CNcbiToolkit_LogMessage::eError, ncbi::CNcbiToolkit_LogMessage::eFatal, ncbi::CNcbiToolkit_LogMessage::eInfo, ncbi::CNcbiToolkit_LogMessage::eTrace, ncbi::CNcbiToolkit_LogMessage::eWarning, ncbi::CNcbiToolkit_LogMessage::m_Msg, and SDiagMessage::m_Severity.

size()

template<size_t KEmbeddedSize, class TType = char>

size_t CFastBuffer< KEmbeddedSize, TType >::size ( void  ) const

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1188 of file ncbimisc.hpp.

References CFastBuffer< KEmbeddedSize, TType >::m_Size.

strdup()

char* strdup

(

const char *

str

)

Supply string duplicate function, if one is not defined.

Definition at line 5602 of file ncbistr.cpp.

Sub()

ssize_t CRawPointer::Sub ( const void *  first, const void *  second  )

inlinestatic

calculate offset inside object

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1149 of file ncbimisc.hpp.

References first().

Swap() [1/3]

template<class X , class Del = Deleter<X>>

void AutoPtr< X, Del >::Swap ( AutoPtr< X, Del > &  a )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 491 of file ncbimisc.hpp.

Swap() [2/3]

template<class X , class Del = ArrayDeleter<X>>

void AutoArray< X, Del >::Swap ( AutoPtr< X, Del > &  a )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 609 of file ncbimisc.hpp.

swap() [1/2]

template<class P , class D >

void swap ( NCBI_NS_NCBI::AutoPtr< P, D > &  ptr1, NCBI_NS_NCBI::AutoPtr< P, D > &  ptr2  )

inline

Definition at line 1517 of file ncbimisc.hpp.

swap() [2/2]

template<class T1 , class T2 >

void swap ( NCBI_NS_NCBI::pair_base_member< T1, T2 > &  pair1, NCBI_NS_NCBI::pair_base_member< T1, T2 > &  pair2  )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1508 of file ncbimisc.hpp.

Referenced by __WORKAROUND_RENAME(), CInt_fuzz::Add(), CAlignCollapser::AddAlignment(), CLinks::AddLink(), CIdMapper::AddMapping(), CTableAnnotDataSource::AddSeqLoc(), CTSE_ScopeInfo::AddUsedTSE(), CAdjustForConsensusSpliceSite::AdjustCDS(), variation_ref::CVariationUtil::AdjustDelinsToInterval(), AlignFNog(), AlignModelToSeqalign(), CFastaReader::AssembleSeq(), xml::document::assign(), xml::node::assign(), bm::basic_bmatrix< BV >::basic_bmatrix(), bisection(), bNNItopSwitch(), bNNIupdateAverages(), BOOST_AUTO_TEST_CASE(), CBuildAlnVecJob::Build(), BuildAlignDataSource(), CCSraDb_Impl::CCSraDb_Impl(), CFixedBlob_ids::CFixedBlob_ids(), CFixedSeq_ids::CFixedSeq_ids(), CFlatSeqLoc::CFlatSeqLoc(), CSeqTable_multi_data::ChangeToBit(), CSeqTable_multi_data::ChangeToBytes(), CSeqTable_multi_data::ChangeToInt1(), CSeqTable_multi_data::ChangeToInt2(), CSeqTable_multi_data::ChangeToInt4(), CSeqTable_multi_data::ChangeToInt8(), CSeqTable_multi_data::ChangeToInt_delta(), CSeqTable_multi_data::ChangeToInt_scaled(), CSeqTable_multi_data::ChangeToReal(), CSeqTable_multi_data::ChangeToReal_scaled(), CSeqTable_multi_data::ChangeToString(), CheckCountRange(), CSplicedAligner::CheckPreferences(), CGeneModel::Clip(), CAlignCollapser::ClipNotSupportedFlanks(), CREnzyme::CombineIsoschizomers(), dtl::Diff< elem, vector< elem >, Compare< elem > >::composeUnifiedHunks(), CClusterer::ComputeClusters(), DeBruijn::CDBGraphDigger::ConnectTwoNodes(), CCassStatusHistoryTaskFetch::Consume(), CCassBlobTaskLoadBlob::ConsumeBlobRecord(), CSeq_loc_Conversion::ConvertInterval(), CProteinAlignText::CProteinAlignText(), CAnnotationASN1::CImplementationData::create_packed_int_seqloc(), CAlignmentAssistant::CreateFeature(), CProtSeqlocHelper::CreateSeqloc(), CDeltaHelper::CreateSSR(), CSegmentGlyph::CSegmentGlyph(), lmdb::cursor::cursor(), CPaintSequence::CutSelection(), lmdb::dbi::dbi(), CAlignmentAssistant::DeleteSelection(), CAlignGlyph::DrawPWAlignElem(), CPaintAlignment::DrawTextCell(), CPaintSequence::DrawTextCell(), lmdb::env::env(), CCmdChangeProjectItem::Execute(), CCmdChangeBioseqId::Execute(), CCmdChangeSeqdesc::Execute(), CDense_seg::ExtractSlice(), CAlignCollapser::FillGapsInAlignmentAndAddToGenomicGaps(), CCompactSAMApplication::FindCompactAligns(), FindCompartments(), FindFGapIntronNog(), FindIGapIntrons(), CFeatureGenerator::SImplementation::FixOrderOfCrossTheOriginSeqloc(), CImage::Flip(), CImageUtil::FlipX(), CGBSeqFormatter::FormatFeature(), FrAlign(), FrAlignFNog1(), fta_fix_tpa_keywords(), CCassandraFilteredPlan::Generate(), generate_vect_simpl0(), CPaintAlignment::GetAlignSelection(), CAlnVecMultiDataSource::GetAlnFromSeq(), CSparseMultiDataSource::GetAlnFromSeq(), CCSraRefSeqIterator::GetAlnOverStarts(), CDensegGraphicDataSource::GetAlnSeqString(), CHitElemGlyph::GetDistPixels(), CDictionaryUtil::GetEditDistance(), CFeatureGenerator::SImplementation::GetExonStructure(), CPaintAlignment::GetFeatWholeRange(), CParse::GetGenes(), CBulkLocationPanel::GetLocForBioseq(), CSeqUtils::GetLocPlacements(), CDBConnectionFactory::CServiceInfo::GetOptions(), GetRandomSegment(), CGuiObjectInfoSeq_align::GetRangeAroundPosition(), CHitMatrixRenderer::GetSelectedHitElemsRect(), CPaintSequence::GetSelection(), CPaintAlignment::GetSelection(), CAlnVecMultiDataSource::GetSeqFromAln(), CSparseMultiDataSource::GetSeqFromAln(), CGuiObjectInfoSeq_align::GetSeqString(), IAlnGraphicDataSource::GetSeqString(), GetTerminalPartialness(), CTranslationGlyph::GetTooltip(), GetUnalignedRegionLength(), GetVector(), GlbAlign(), IEditingActionFeat::GoToOrigFeature(), IEditingActionFeat::GoToProtFeature(), hunt(), huntExtreme(), dtl::Diff< elem, vector< elem >, Compare< elem > >::init(), CSeqScores::Init(), C5ColImportData::Initialize(), CAlignRange< Position >::IsAbutting(), CLinks::IsLink(), iter_swap(), LclAlign(), CAlnVecRow::LTH_OnLayoutChanged(), CHitList::MakeCanonical(), CNWFormatter::MakeSegments(), CPosMapper::Map(), CPhyloTreeDataSource::MoveNode(), StyleManager::MoveUserAnnotation(), newtonRaphson(), SNetServiceIterator_RandomPivot::Next(), CDistMethods::NjTree(), NNItopSwitch(), NNIupdateAverages(), CAlignmentAssistant::OnAddAlignCDS(), CAlignmentAssistant::OnAddAlignOther(), CAlignmentAssistant::OnAddAlignRNA(), CStringConstraintSelect::OnApply(), CPaintSequence::OnCopy(), CSuspectProductRulesEditor::OnDeleteRules(), DeBruijn::CDBGraphDigger::OneStepBranchExtend(), CPaintAlignment::OnPaint(), CPaintSequence::OnPaint(), CAssemblyTrackingPanel::OnPopulateBtnClick(), CLocationListCtrl::OnSortClick(), CPubseqGatewayApp::OnStatistics(), CWGSResolver_VDB::Open(), CPhyTreeCalc::CDistMatrix::operator()(), xml::impl::ait_impl::operator=(), xml::attributes::operator=(), xml::attributes::const_iterator::operator=(), xml::node::const_iterator::operator=(), xml::node_set::const_iterator::operator=(), xml::document::operator=(), xml::attributes::iterator::operator=(), xml::node::iterator::operator=(), xml::node_set::iterator::operator=(), xml::node::operator=(), lmdb::cursor::operator=(), lmdb::dbi::operator=(), lmdb::env::operator=(), lmdb::txn::operator=(), SSparseIndex::Optimize(), CDense_seg::OrderAdjacentGaps(), ParseAttributes(), CSeqGlyph::PointInRect(), CTabularFormatter_AlignStart::Print(), CTabularFormatter_AlignEnd::Print(), ProjectExons(), readGFF3(), CHitElemGlyph::Render(), CFindASN1Dlg::ReplaceLinebreaks(), CSuspectProductRulesEditor::ReplaceRule(), CChain::RestoreReasonableConfirmedStart(), CDense_seg::Reverse(), DeBruijn::CDBGraphDigger::SContig::ReverseComplement(), ReverseComplementLocation(), CCompactSAMApplication::Run(), CXcompareAnnotsApplication::Run(), s_GetAlnMapplingLocs(), s_GetBlobs(), s_GetLatLong(), variation::CVariationUtil::CVariantPropertiesIndex::s_GetNeighborhoodLocs(), variation::CVariationUtil::CVariantPropertiesIndex::s_GetStartAndStopCodonsLocs(), variation::CVariationUtil::CVariantPropertiesIndex::s_GetUTRLocs(), s_MakeRandomDeflineSet(), CMacroFunction_SetStructCommDb::s_MoveSuffixToTheEnd(), s_PartialAtGapOrNs(), s_PopulateUserObject(), s_PrepareTrackPane(), s_PrintLocAsJavascriptArray(), s_ProcessSeqIdFilters(), s_RCUMoveGPMarkers(), s_ReorderNorthSouthEastWest(), s_SetRangesForMixedAlignments(), s_SwapRows(), s_TestForOverlapEx(), CWGSDb_Impl::SAmbiguityInfo::SAmbiguityInfo(), xml::document::save_to_file(), xml::document::save_to_stream(), xml::document::save_to_string(), CChain::SetConfirmedEnds(), CChain::SetConfirmedStartStopForCompleteProteins(), CCassandraFullscanPlan::SetConnection(), CBlastPrelimSearch::SetInterruptCallback(), SetPartial(), CSeqMarkHandler::SetRange(), CIpgStorageReportEntry::SetRefseq(), CBlobStatusHistoryRecord::SetReplacedByIds(), CBlobStatusHistoryRecord::SetReplacesIds(), CAlignShadow::SetStrand(), sort_feat_cit(), bm::sparse_vector< Val, BV >::sparse_vector(), CCassandraFullscanPlan::SplitTokenRangesForLimits(), hashtable< _Val, _Key, _HF, _ExK, _EqK, _All >::swap(), xml::attributes::attr::swap(), xml::attributes::swap(), AutoPtr< CNcbistrstream_Base >::Swap(), AutoArray< CS_INT >::Swap(), DeBruijn::CKmerCountTemplate< LargeInt< 1 >, LargeInt< 2 >, LargeInt< 4 >, LargeInt< 8 >, LargeInt< 16 > >::Swap(), CNcbiMatrix< T >::Swap(), xml::attributes::const_iterator::swap(), xml::node::const_iterator::swap(), xml::node_set::const_iterator::swap(), CRawScoreVector< Key, Score >::Swap(), DeBruijn::CReadHolder::Swap(), CScoreVector< Key, Score >::Swap(), CSeqDB_BitSet::Swap(), CSimpleBufferT< char >::swap(), xml::document::swap(), xml::attributes::iterator::swap(), xml::node::iterator::swap(), xml::node_set::iterator::swap(), xml::node::swap(), pair_base_member< TKeyGetter, CTreeNode * >::Swap(), SNetServiceImpl::SRetry::Swap(), bm::sparse_vector< Val, BV >::swap(), bm::str_sparse_vector< CharType, BV, STR_SIZE >::swap(), set< ETranslationFrame >::swap(), multiset< TIndexKey, PIndexBySecondLess >::swap(), TParse_rule::Swap(), IEditingActionBiosource::SwapContext(), IEditingActionDesc::SwapContext(), IEditingActionInst::SwapContext(), IEditingActionDescPub::SwapContext(), CEditingActionDescPubTitle::SwapContext(), CEditingActionDescPubPmid::SwapContext(), IEditingActionDescAffil::SwapContext(), IEditingActionDescAuthors::SwapContext(), CEditingActionDescAuthorNameList::SwapContext(), IEditingActionFeat::SwapContext(), CEditingActionFlatFile::SwapContext(), CEditingActionSeqid::SwapContext(), IEditingAction::SwapContext(), NMacroUtil::SwapGbQualWithValues(), CNcbiMatrix< T >::SwapRows(), CDense_seg::SwapRows(), CStd_seg::SwapRows(), CObjectIStreamAsyncIterator< TRoot >::sx_ClearGarbageAndParse(), CObjectIStreamAsyncIterator< TRoot, TChild >::sx_ClearGarbageAndParse(), sx_PopLastNewPtrMultiple(), CGlBitmapFont::TextOut(), CGlTextureFont::TextOut(), CMacroFunction_MakeInterval::TheFunction(), CLocationListCtrl::TransferDataFromWindow(), ProjectCDS::transform_align(), RemoveTrailingNs::transform_model(), CPaintSequence::TranslateCDS(), CAlignmentAssistant::TranslateLocations(), CMatrix3< T >::Transpose(), CMatrix4< T >::Transpose(), CNcbiMatrix< T >::Transpose(), CChainer::CChainerImpl::TrimAlignmentsIncludedInDifferentGenes(), lmdb::txn::txn(), CPrintSetupDlg::UpdateMargins(), CFarPointerSeq::ValidateAlignment(), CAlignRangeCollection< CAlignRange< TSeqPos > >::ValidateRanges(), CAlignRangeCollectionList< CAlignRange< TSignedSeqPos > >::ValidateRanges(), VariBandAlign(), CFeatureTableReader_Imp::x_AddIntervalToFeature(), CSeqSearch::x_AddPattern(), CLocationListCtrl::x_AddRow(), CAdjustForConsensusSpliceSite::x_AdjustCDS3End(), CAdjustForConsensusSpliceSite::x_AdjustCDS5End(), variation::CVariationUtil::x_AdjustDelinsToInterval(), CFeatTree::x_AssignGenes(), CFeatTree::x_AssignParentsByOverlap(), CAlignGlyph::x_CalcIntervals(), CLayoutPWAlign::x_CalcIntervals(), CSafeStaticGuard::x_Cleanup(), CFeatureGraph::x_Create(), CInversionMergeAligner::x_CreateDiscAlignment(), CSGAlignStatJob::x_CreatePileUpGraphs(), CNaSeqlocHelper::x_CreateSeqloc(), CAlignGlyph::x_DrawAlignRowSequence(), CFeatGlyph::x_DrawFeatureBar(), CAlignGlyph::x_DrawGaps(), CAlignGlyph::x_DrawInternalUnalignedRegions(), CAlignGlyph::x_DrawMultiAlign(), CFeatGlyph::x_DrawProjectedRuler(), CTranslationGlyph::x_DrawSequence(), CHistogramGlyph::x_DrawSmoothCurve(), CAlignGlyph::x_DrawUnalignedRowSequence(), CAlnVecRow::x_ForEachAlnSeg(), CAlnVecRow::x_GetAlignmentTooltip_Helper(), CBoundaryShapeTri::x_GetArc(), CSeq_align_Mapper_Base::x_GetDstSpliced(), CSeq_align_Mapper_Base::x_GetDstStd(), CLinks::x_GetLink(), CLocationListCtrl::x_GetRowData(), CCommonComponentScorer::x_GetSeqHistCompList(), CGuiObjectInfoSeq_feat::x_GetSplicedSeqTitle(), CSeq_align_Mapper_Base::x_Init(), CPairwise_CI::x_InitSegment(), CSparse_CI::x_InitSegment(), CTranslationGlyph::x_Intersecting(), CValidError_bioseq::x_IsPartialAtSpliceSiteOrGap(), CAuthorNamesPanel::x_MoveRowUp(), CMacroAuthorNamesPanel::x_MoveRowUp(), CNCMMSizePool::x_NewEmptySet(), CIntronTrack::x_ParseSettings(), variation::CHgvsParser::x_PlacementCoordsToStr(), CAlnSpanVertModel::x_PopulateRows(), CAlnSpanVertModel::x_PopulateRowsSpliced(), CPSGS_SNPProcessor::x_ProcessAnnotationRequest(), CAlignFilter::x_Query_Range(), CAlignGlyph::x_RenderAveragableScores(), CTraceGlyph::x_RenderConfGraph(), CTraceGraph::x_RenderConfGraph(), CTraceGraph::x_RenderContour(), CTraceGlyph::x_RenderCurveSegment(), CTraceGraph::x_RenderCurveSegment(), CHitMatrixGraph::x_RenderEventHandler(), CAlnVecRow::x_RenderIcons(), CAlnVecRow::x_RenderIconStrand(), CTraceGlyph::x_RenderIntensityGraphs(), CTraceGraph::x_RenderIntensityGraphs(), CAlignGlyph::x_RenderNonAveragableScores(), CSeqGraphicPane::x_RenderRectSelHandler(), CRuler::x_RenderScale(), IPhyloTreeRender::x_RenderSelection(), CMouseZoomHandler::x_RenderZoomRect(), IPhyloTreeRender::x_SelectByRect(), CNewCleanup_imp::x_SeqIntervalBC(), CNCMMReserve::x_SortChunkPtrs(), CSeqVector_CI::x_SwapCache(), x_TestAlignmentQuerySubjStrandCombinations(), CFeatTrim::x_TrimLocation(), CObjectIStreamAsyncIterator< TRoot >::CData::x_UpdateFuturesQueue(), CAlnSpanVertModel::x_UpdateMetaData(), CPsiBlastInputClustalW::x_ValidateQueryInMsa(), CGff3Writer::xAssignAlignmentDensegTarget(), CGff3FlybaseWriter::xAssignAlignmentDensegTarget(), CSeqGraphicRenderer::ZoomOnRange(), and CUnlockedTSEsGuard::~CUnlockedTSEsGuard().

Swap() [3/3]

template<class Base , class Member >

void pair_base_member< Base, Member >::Swap ( pair_base_member< first_type, second_type > &  p )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 287 of file ncbimisc.hpp.

x_AddDefaultArgs()

void CNcbiApplicationAPI::x_AddDefaultArgs ( void  )

private

Definition at line 1356 of file ncbiapp.cpp.

References CNcbiApplicationAPI::fHideAll, CNcbiApplicationAPI::fHideFullHelp, CNcbiApplicationAPI::fHideFullVersion, CNcbiApplicationAPI::fHideHelp, CNcbiApplicationAPI::fHideVersion, CNcbiApplicationAPI::m_ArgDesc, CNcbiApplicationAPI::m_DisableArgDesc, CNcbiApplicationAPI::m_HideArgs, and mask.

Referenced by CNcbiApplicationAPI::AppMain(), and CNcbiApplicationAPI::x_TryMain().

x_HonorStandardSettings()

void CNcbiApplicationAPI::x_HonorStandardSettings ( IRegistry *  reg = 0 )

private

Read standard NCBI application configuration settings.

[NCBI]: HeapSizeLimit, CpuTimeLimit [DEBUG]: ABORT_ON_THROW, DIAG_POST_LEVEL, MessageFile

Parameters

reg	Registry to read from. If NULL, use the current registry setting.

Definition at line 1600 of file ncbiapp.cpp.

References ABORT_ON_THROW, DIAG_MESSAGE_FILE, DIAG_POST_LEVEL, DIAG_TRACE, CSafeStaticGuard::DisableChildThreadsCheck(), eDiagFilter_Post, eDiagFilter_Trace, eDT_Enable, IRegistry::eErrPost, ERR_POST_X, IRegistry::Get(), get_limits(), IRegistry::GetBool(), GetDiagHandler(), IRegistry::GetInt(), CRef< C, Locker >::GetPointer(), IRegistry::GetString(), CSystemInfo::GetTotalPhysicalMemorySize(), CSysLog::HonorRegistrySettings(), info, kEmptyStr, CNcbiApplicationAPI::m_Config, max(), NCBI_CATCH_X, NCBI_THROW, NPOS, NULL, CStackTrace::s_HonorSignalHandlingConfiguration(), CObject::SetAllocFillMode(), SetCpuTimeLimit(), SetDiagErrCodeInfo(), SetDiagFilter(), SetDiagFixedPostLevel(), SetDiagTrace(), SetMemoryLimit(), SetThrowTraceAbort(), NStr::StringToSizet(), NStr::StringToUInt(), NStr::StringToUInt8_DataSize(), CNcbiDiag::StrToSeverityLevel(), and Warning().

Referenced by CNcbiApplicationAPI::x_TryInit().

x_LogOptions()

void CNcbiApplicationAPI::x_LogOptions ( int  event )

private

Log environment, registry, command arguments, path.

Definition at line 561 of file ncbiapp.cpp.

References CProcessBase::SMemoryUsage::data, CProcessBase::eChildren, IRegistry::EnumerateEntries(), IRegistry::EnumerateSections(), env, CProcessBase::eProcess, eStartEvent, eStopEvent, CProcessBase::eThread, CDiagContext::Extra(), fLogAppArguments, fLogAppEnvironment, fLogAppEnvironmentStop, fLogAppPath, fLogAppRegistry, fLogAppRegistryStop, fLogAppResUsageStop, IRegistry::Get(), CNcbiApplicationAPI::GetArgs(), CNcbiApplicationAPI::GetConfig(), GetDiagContext(), CNcbiApplicationAPI::GetEnvironment(), CCurrentProcess::GetMemoryUsage(), CNcbiApplicationAPI::GetProgramExecutablePath(), CCurrentProcess::GetTimes(), ITERATE, CNcbiApplicationAPI::m_LogOptions, Print(), CDiagContext_Extra::Print(), RES_SIZE_USAGE, RES_TIME_USAGE, CProcessBase::SMemoryUsage::resident, CProcessBase::SMemoryUsage::resident_peak, CProcessBase::SMemoryUsage::shared, CProcessBase::SMemoryUsage::stack, CProcessBase::SMemoryUsage::total, CProcessBase::SMemoryUsage::total_peak, and val.

Referenced by CNcbiApplicationAPI::x_TryMain().

x_ReadLogOptions()

void CNcbiApplicationAPI::x_ReadLogOptions ( )

private

Read switches that are stored in m_LogOptions from registry and environment.

Definition at line 506 of file ncbiapp.cpp.

References fLogAppArguments, fLogAppEnvironment, fLogAppEnvironmentStop, fLogAppPath, fLogAppRegistry, fLogAppRegistryStop, fLogAppResUsageStop, and CNcbiApplicationAPI::m_LogOptions.

Referenced by CNcbiApplicationAPI::x_TryMain().

x_Release() [1/2]

template<class X , class Del = Deleter<X>>

element_type* AutoPtr< X, Del >::x_Release ( void  ) const

inlineprivate

Release for const object.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 504 of file ncbimisc.hpp.

Referenced by AutoPtr< CNcbistrstream_Base >::AutoPtr(), and AutoPtr< CNcbistrstream_Base >::operator=().

x_Release() [2/2]

template<class X , class Del = ArrayDeleter<X>>

element_type* AutoArray< X, Del >::x_Release ( void  ) const

inlineprivate

Release for const object.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 617 of file ncbimisc.hpp.

Referenced by AutoArray< CS_INT >::AutoArray(), and AutoArray< CS_INT >::operator=().

x_SetupStdio()

void CNcbiApplicationAPI::x_SetupStdio ( void  )

private

Setup C++ standard I/O streams' behaviour.

Called from AppMain() to do compiler-specific optimization for C++ I/O streams. For example, since SUN WorkShop STL stream library has significant performance loss when sync_with_stdio is TRUE (default), so we turn it off. Another, for GCC version greater than 3.00 we forcibly set cin stream buffer size to 4096 bytes – which boosts the performance dramatically.

Definition at line 1327 of file ncbiapp.cpp.

References _ASSERT, CNcbiApplicationAPI::fBinaryCin, CNcbiApplicationAPI::fBinaryCout, CNcbiApplicationAPI::fDefault_CinBufferSize, CNcbiApplicationAPI::fNoSyncWithStdio, CNcbiApplicationAPI::m_CinBuffer, CNcbiApplicationAPI::m_StdioFlags, NCBI_OS_UNIX, NcbiSys_fileno, and NcbiSys_setmode.

Referenced by CNcbiApplicationAPI::AppMain().

x_TryInit()

void CNcbiApplicationAPI::x_TryInit ( EAppDiagStream  diag, const char *  conf  )

private

Definition at line 413 of file ncbiapp.cpp.

References CNcbiApplicationAPI::AppStart(), Critical(), eDCM_Flush, ERR_POST_X, Fatal(), fatal(), CNcbiApplicationAPI::GetArguments(), CNcbiApplicationAPI::Init(), CNcbiApplicationAPI::LoadConfig(), CNcbiApplicationAPI::m_ArgDesc, CNcbiApplicationAPI::m_Config, CNcbiApplicationAPI::m_ConfigLoaded, CNcbiApplicationAPI::m_DisableArgDesc, CNcbiApplicationAPI::m_LogFile, NCBI, NCBI_PARAM_TYPE(), NULL, CNcbiApplicationAPI::SetupArgDescriptions(), CDiagContext::SetupDiag(), VerifyCpuCompatibility(), CDiagContext::x_FinalizeSetupDiag(), and CNcbiApplicationAPI::x_HonorStandardSettings().

Referenced by CNcbiApplicationAPI::x_TryMain().

x_TryMain()

void CNcbiApplicationAPI::x_TryMain ( EAppDiagStream  diag, const char *  conf, int *  exit_code, bool *  got_exception  )

private

Definition at line 649 of file ncbiapp.cpp.

References CNcbiApplicationAPI::DryRun(), eDiagAppState_AppEnd, eDiagAppState_AppRun, CArgHelpException::eHelpErr, CArgHelpException::eHelpFull, CArgHelpException::eHelpShowAll, CArgHelpException::eHelpXml, ERR_POST_X, eStartEvent, eStopEvent, CNcbiApplicationAPI::Exit(), GetDiagContext(), CCoreException::GetErrCode(), CException::GetRequestContext(), CNcbiApplicationAPI::m_ArgDesc, CNcbiApplicationAPI::m_DryRun, NCBI_REPORT_EXCEPTION_X, NCBI_RETHROW_SAME, CNcbiApplicationAPI::Run(), s_HandleExceptions(), CDiagContext::SetGlobalAppState(), CDiagContext::SetRequestContext(), str(), CException::what(), CNcbiApplicationAPI::x_AddDefaultArgs(), CNcbiApplicationAPI::x_LogOptions(), CNcbiApplicationAPI::x_ReadLogOptions(), and CNcbiApplicationAPI::x_TryInit().

Referenced by CNcbiApplicationAPI::AppMain().

~AutoArray()

template<class X , class Del = ArrayDeleter<X>>

AutoArray< X, Del >::~AutoArray ( void  )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 554 of file ncbimisc.hpp.

~AutoPtr()

template<class X , class Del = Deleter<X>>

AutoPtr< X, Del >::~AutoPtr ( void  )

inline

Destructor.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 434 of file ncbimisc.hpp.

~CAction()

template<class TFunc >

virtual CNcbiActionGuard::CAction< TFunc >::~CAction ( void  )

inlinevirtual

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1430 of file ncbimisc.hpp.

~CAction_Base()

virtual CNcbiActionGuard::CAction_Base::~CAction_Base ( )

inlinevirtual

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1419 of file ncbimisc.hpp.

~CDefaultIdler()

virtual CDefaultIdler::~CDefaultIdler ( void  )

inlinevirtual

Definition at line 728 of file ncbiapp_api.hpp.

~CFastBuffer()

template<size_t KEmbeddedSize, class TType = char>

CFastBuffer< KEmbeddedSize, TType >::~CFastBuffer ( )

inline

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1172 of file ncbimisc.hpp.

References CFastBuffer< KEmbeddedSize, TType >::m_Buffer, and CFastBuffer< KEmbeddedSize, TType >::m_EmbeddedBuffer.

~CNcbiActionGuard()

virtual CNcbiActionGuard::~CNcbiActionGuard ( void  )

inlinevirtual

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1390 of file ncbimisc.hpp.

References CNcbiActionGuard::ExecuteActions().

~CNcbiApplicationAPI()

CNcbiApplicationAPI::~CNcbiApplicationAPI ( void  )

virtual

Destructor.

Clean up the application settings, flush the diagnostic stream.

Definition at line 227 of file ncbiapp.cpp.

References CNcbiApplicationAPI::ExecuteOnExitActions(), CNcbiApplicationAPI::FlushDiag(), CNcbiApplicationAPI::GetInstanceLock(), CNcbiApplicationAPI::m_CinBuffer, CNcbiApplicationAPI::m_Instance, NcbiCout, CThread::sm_IsExiting, and CThread::WaitForAllThreads().

~CNcbiApplicationGuard()

CNcbiApplicationGuard::~CNcbiApplicationGuard

(

void

)

Definition at line 104 of file ncbiapp.cpp.

~CNcbiToolkit_LogMessage()

CNcbiToolkit_LogMessage::~CNcbiToolkit_LogMessage ( void  )

protectedvirtual

Definition at line 69 of file ncbi_toolkit.cpp.

~INcbiIdler()

virtual INcbiIdler::~INcbiIdler ( void  )

inlinevirtual

Definition at line 716 of file ncbiapp_api.hpp.

~INcbiToolkit_LogHandler()

virtual ncbi::INcbiToolkit_LogHandler::~INcbiToolkit_LogHandler ( )

inlinevirtual

Definition at line 162 of file ncbi_toolkit.hpp.

~IPhoneHomePolicy()

virtual IPhoneHomePolicy::~IPhoneHomePolicy ( )

inlinevirtual

Destructor.

Definition at line 68 of file phone_home_policy.hpp.

References IPhoneHomePolicy::Finish().

Variable Documentation

BEGIN_NCBI_NAMESPACE

BEGIN_NCBI_NAMESPACE

NCBI_EOWNERSHIP_DEFINED.

Definition at line 109 of file ncbimisc.hpp.

BEGIN_STD_NAMESPACE

BEGIN_STD_NAMESPACE

Definition at line 1504 of file ncbimisc.hpp.

END_NCBI_NAMESPACE

END_NCBI_NAMESPACE

Definition at line 1502 of file ncbimisc.hpp.

END_STD_NAMESPACE

END_STD_NAMESPACE

Definition at line 1549 of file ncbimisc.hpp.

kInvalidSeqPos

const TSeqPos kInvalidSeqPos = ((TSeqPos) (-1))

Define special value for invalid sequence position.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 878 of file ncbimisc.hpp.

Referenced by SAlignment_Segment::AddRow(), BOOST_AUTO_TEST_CASE(), BuildGoodByteGraph(), CSeqMap::CanResolveRange(), CBamRawAlignIterator::CBamRawAlignIterator(), CCSraDb_Impl::CCSraDb_Impl(), CFastaReader::CloseMask(), CBam2Seq_graph::CollectCoverage(), CBam2Seq_graph::CollectEstimatedCoverage(), CBam2Seq_graph::CollectRawAccessCoverage(), CSeq_loc_Conversion::CombineWith(), CSeq_loc_Conversion_Set::ConvertInterval(), CSeq_loc_Conversion::ConvertPacked_pnt(), CSeq_loc_Conversion_Set::ConvertPacked_pnt(), CSeq_loc_Conversion::ConvertPos(), CBlobSplitterImpl::CopyDescr(), CBlobSplitterImpl::CopySequence(), CBlobSplitterImpl::CopySkeleton(), CreateDense_diagFromAnchoredAln(), CreatePackedsegFromAnchoredAln(), CreatePackedsegFromPairwiseAln(), CDense_seg::CreateRowSeq_interval(), CSeqMap::CSeqMap(), CSeqMap_CI::CSeqMap_CI(), CSNPDbPageIterator::CSNPDbPageIterator(), CIdRangeMap::SExtremes::Empty(), SBamIndexRefIndex::EstimateDataSizeByAlnStartPos(), CInternalStopFinder::FindStartStopRanges(), CSparseAln::GetAlnSeqString(), NSnpGui::GetBinTooltip(), CSeq_loc::GetCircularLength(), CResolveIntersectingFeats::GetCommand(), CFastaReader::GetCurrentPos(), CSeq_align_Mapper_Base::GetDstAlign(), NSnpBins::GetEntry(), CIntronOffsetHelper::GetIntronOffset(), CBlobSplitterImpl::GetLength(), CSeqMap::GetLength(), CBamRefSeqIterator::GetLength(), CRegexp_loc::GetLoc(), CBamAlignIterator::GetMatchAlign(), CCSraAlignIterator::GetMatchAlign(), CBamAlignIterator::GetNextRefSeqPos(), GetOverlappingFeatures(), CAnnotObject_Less::GetRangeOpen(), CBamDb::GetRefSeqLength(), CBamAlignIterator::SAADBImpl::GetRefSeqPos(), SRepeatRegion::GetRptLength(), CBamRawAlignIterator::GetSegments(), SAlignment_Segment::SAlignment_Row::GetSegStart(), CScope_Impl::GetSeq_featHandle(), CCSraRefSeqIterator::GetSeqLength(), CDefault_Mapper_Sequence_Info::GetSequenceLength(), CScope_Impl::GetSequenceLength(), CDataLoader::GetSequenceLength(), CDataSource::GetSequenceLength(), CAsnCache_DataLoader::GetSequenceLength(), CBlastDbDataLoader::GetSequenceLength(), CSRADataLoader::GetSequenceLength(), CTestMapperSeqInfo::GetSequenceLength(), CScope_Mapper_Sequence_Info::GetSequenceLength(), CHugeAsnDataLoader::GetSequenceLength(), CGBDataLoader_Native::GetSequenceLength(), CSraRun::GetSequenceLength(), CPSGDataLoader_Impl::GetSequenceLengthOnce(), CCSRADataLoader_Impl::GetSequenceLengthOnce(), CWGSDataLoader_Impl::GetSequenceLengthOnce(), CDataLoader::GetSequenceLengths(), CScope_Impl::GetSequenceLengths(), CPSGDataLoader_Impl::GetSequenceLengthsOnce(), CPacked_seqint::GetStart(), CPacked_seqpnt::GetStart(), CSeq_loc::GetStart(), CSeq_loc_mix::GetStart(), CPacked_seqint::GetStop(), CPacked_seqpnt::GetStop(), CSeq_loc::GetStop(), CSeq_loc_mix::GetStop(), CPhrap_Seq::GetUnpaddedPos(), CGapItem::HasEstimatedLength(), IfOnlyStopCodon(), InitSplicedsegFromPairwiseAln(), CSpliced_seg::IsConsistentBiologicalOrder(), CLoadLockLength::IsFound(), CValidError_annot::IsLocationUnindexed(), variation::IsPureFuzzPoint(), CUser_object::CRefGeneTrackingAccession::IsSetFrom(), CUser_object::CRefGeneTrackingAccession::IsSetTo(), CCSRAFileInfo::IsValidReadId(), CBamRefSeqInfo::LoadAlignChunk(), CReader::LoadLengths(), CBamRefSeqInfo::LoadSeqChunk(), CReader::LoadSequenceLength(), LoadSequencesToScope(), CUser_object::CRefGeneTrackingAccession::MakeAccessionField(), CUser_object::CRefGeneTrackingAccession::MakeAccessionFromUserField(), CBamIndex::MakeEstimatedCoverageAnnot(), CFeatureTableReader::MakeGap(), CBlobSplitterImpl::MakeID2Chunk(), CMappingRange::Map_Range(), SSNP_Info::NoMore(), CFastaReader::OpenMask(), CAnnotObject_Less::operator()(), CAnnotObject_LessReverse::operator()(), CRepeatToFeat::operator()(), OutOfRange(), CGeneFinder::CGeneSearchPlugin::postProcessDiffAmount(), CRepeatLibrary::Read(), CPhrap_Seq::ReadData(), CFastaReader::ReadOneSeq(), CStd_seg::RemapToLoc(), CSNPDbPageIterator::Reset(), CSNPDbGraphIterator::Reset(), CDemoApp::Run(), s_GetTopology(), s_LocationsOverlap(), s_PrematureStopCodon(), CFeatureGenerator::s_ProjectRNA(), s_SeqLocToTotalRangesInfoMapByStrand(), s_ShouldRemoveRef(), s_TestForOverlapEx(), CWGSDb_Impl::SAmbiguityInfo::SAmbiguityInfo(), CCacheWriter::SaveSequenceLength(), CSNPDbGraphIterator::Select(), CSNPDbPageIterator::Select(), CCSraAlignIterator::Select(), SBamIndexRefIndex::SetLengthFromHeader(), CSeqMap::SetRegionInChunk(), CGeneFinder::CGeneSearchPlugin::setUpFeatureIterator(), TestForOverlapEx(), TestStrongKozakUorfs(), CFastaOstream::Write(), CFastaOstreamComp::Write(), variation::CHgvsParser::x_abs_pos(), CSeqMap::x_Add(), CPhrap_Contig::x_AddAlignRanges(), CPhrap_Contig::x_AddBaseSegFeats(), CSeq_loc_Mapper_Base::x_AddConversion(), CSeqMap::x_AddEnd(), CGapAnalysis::x_AddGapsFromBases(), CPhrap_Read::x_AddQualityFeat(), CSeq_loc_Mapper_Base::x_AdjustSeqTypesToProt(), CSeq_loc_Mapper_Base::x_CheckSeqTypes(), CFastaReader::x_CloseMask(), CSeq_align_Mapper_Base::x_ConvertSegment(), CSeq_align_Mapper::x_ConvertSegmentCvt(), CAlnMixMerger::x_CreateDenseg(), CNaSeqlocHelper::x_CreateSeqloc(), CSeqMap::x_FindSegment(), variation_ref::CHgvsParser::x_fuzzy_pos(), variation::CHgvsParser::x_fuzzy_pos(), CFlatGatherer::x_GatherCDSReferences(), CSeqMap::x_GetChunkToLoad(), CSeq_align_Mapper_Base::x_GetDstDendiag(), CSeq_align_Mapper_Base::x_GetDstDenseg(), CSeq_align_Mapper_Base::x_GetDstPacked(), CSeq_align_Mapper_Base::x_GetDstStd(), CAnnotObject_Less::x_GetExtremes(), CSeq_loc_Mapper_Base::x_GetMappedSeq_loc(), CSeq_align_Mapper_Base::x_GetPartialDenseg(), CWGSSeqIterator::x_GetQualityAnnot(), CSeqMap::x_GetSegmentLength(), CPsiBlastInputData::x_GetSubjectSequence(), CSeq_align_Mapper_Base::x_Init(), CBamRefSeqInfo::x_InitAlignIterator(), CSeq_loc_Mapper::x_InitGCSequence(), CSeq_loc_Mapper_Base::x_InitializeLocs(), CSeq_align_Mapper_Base::x_IsEmpty(), CSeqMap::x_LoadObject(), CBamRefSeqInfo::x_LoadRangesCov(), CBamRefSeqInfo::x_LoadRangesEstimated(), CBamRefSeqInfo::x_LoadRangesStat(), variation_ref::CHgvsParser::x_location(), variation::CHgvsParser::x_location(), CSeq_loc_Mapper_Base::x_MapInterval(), CSeq_loc_Mapper_Base::x_MapNextRange(), CSeq_loc_Mapper_Base::x_MapSeq_loc(), CBioseqGaps_CI::x_Next(), CSNPDbPageIterator::x_Next(), CSNPDbGraphIterator::x_Next(), CSeq_loc_Mapper_Base::x_NextMappingRange(), CFastaReader::x_OpenMask(), CSeq_loc_Mapper_Base::x_PreserveDestinationLocs(), CId2ReaderBase::x_ProcessGetSeqIdSeqId(), CSeqMap::x_ResolveSegmentLength(), CSeqMap::x_ResolveSegmentPosition(), CSeqMap_CI::x_Select(), CSeqMap::x_SetChanged(), CIntronOffsetHelper::x_SetDeltaItemOffset(), and CSingleFeatValidator::x_ValidateRptUnitRangeVal().

m_Actions

TActions CNcbiActionGuard::m_Actions

private

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1437 of file ncbimisc.hpp.

Referenced by CNcbiActionGuard::AddAction(), and CNcbiActionGuard::ExecuteActions().

m_App

CNcbiApplicationAPI* CNcbiApplicationGuard::m_App

private

Definition at line 121 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationGuard::CNcbiApplicationGuard(), CNcbiApplicationGuard::Get(), CNcbiApplicationGuard::operator bool(), and CNcbiApplicationGuard::operator!().

m_AppFlags

TAppFlags CNcbiApplicationAPI::m_AppFlags = 0

private

Definition at line 710 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::AppMain(), and CNcbiApplicationAPI::SetAppFlags().

m_AppLock

shared_ptr<CReadLockGuard> CNcbiApplicationGuard::m_AppLock

private

Definition at line 122 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationGuard::CNcbiApplicationGuard().

m_ArgDesc

unique_ptr<CArgDescriptions> CNcbiApplicationAPI::m_ArgDesc

private

Cmd.-line arg descriptions.

Definition at line 689 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::AppMain(), CNcbiApplicationAPI::GetArgDescriptions(), CNcbiApplicationAPI::SetupArgDescriptions(), CNcbiApplicationAPI::x_AddDefaultArgs(), CNcbiApplicationAPI::x_TryInit(), and CNcbiApplicationAPI::x_TryMain().

m_Args

unique_ptr<CArgs> CNcbiApplicationAPI::m_Args

private

Parsed cmd.-line args.

Definition at line 690 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::GetArgs(), and CNcbiApplicationAPI::SetupArgDescriptions().

m_Arguments

unique_ptr<CNcbiArguments> CNcbiApplicationAPI::m_Arguments

private

Command-line arguments.

Definition at line 688 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::AppMain(), CNcbiApplicationAPI::AppStart(), CNcbiApplicationAPI::CNcbiApplicationAPI(), CNcbiApplicationAPI::GetArguments(), and CNcbiApplicationAPI::LoadConfig().

m_Buffer

template<size_t KEmbeddedSize, class TType = char>

TType* CFastBuffer< KEmbeddedSize, TType >::m_Buffer

private

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1192 of file ncbimisc.hpp.

Referenced by CFastBuffer< KEmbeddedSize, TType >::begin(), CFastBuffer< KEmbeddedSize, TType >::end(), CFastBuffer< KEmbeddedSize, TType >::operator*(), CFastBuffer< KEmbeddedSize, TType >::operator+(), CFastBuffer< KEmbeddedSize, TType >::operator[](), and CFastBuffer< KEmbeddedSize, TType >::~CFastBuffer().

m_CinBuffer

char* CNcbiApplicationAPI::m_CinBuffer

private

Cin buffer if changed.

Definition at line 694 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::CNcbiApplicationAPI(), CNcbiApplicationAPI::x_SetupStdio(), and CNcbiApplicationAPI::~CNcbiApplicationAPI().

m_Config

CRef<CNcbiRegistry> CNcbiApplicationAPI::m_Config

private

Guaranteed to be non-NULL.

Definition at line 686 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::AppMain(), CNcbiApplicationAPI::CNcbiApplicationAPI(), CNcbiApplicationAPI::GetConfig(), CNcbiApplicationAPI::GetRWConfig(), CNcbiApplicationAPI::LoadConfig(), CNcbiApplicationAPI::x_HonorStandardSettings(), and CNcbiApplicationAPI::x_TryInit().

m_ConfigLoaded

bool CNcbiApplicationAPI::m_ConfigLoaded

private

Finished loading config.

Definition at line 704 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::FinishedLoadingConfig(), CNcbiApplicationAPI::LoadConfig(), and CNcbiApplicationAPI::x_TryInit().

m_ConfigPath

string CNcbiApplicationAPI::m_ConfigPath

private

Path to .ini file used.

Definition at line 699 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::GetConfigPath(), CNcbiApplicationAPI::HasLoadedConfig(), and CNcbiApplicationAPI::LoadConfig().

m_Data [1/2]

template<class X , class Del = Deleter<X>>

pair_base_member<deleter_type, bool> AutoPtr< X, Del >::m_Data

mutableprivate

State info.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 501 of file ncbimisc.hpp.

Referenced by AutoPtr< CNcbistrstream_Base >::IsOwned(), AutoPtr< CNcbistrstream_Base >::operator=(), AutoPtr< CNcbistrstream_Base >::release(), AutoPtr< CNcbistrstream_Base >::reset(), and AutoPtr< CNcbistrstream_Base >::Swap().

m_Data [2/2]

template<class X , class Del = ArrayDeleter<X>>

pair_base_member<deleter_type, bool> AutoArray< X, Del >::m_Data

mutableprivate

State info.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 624 of file ncbimisc.hpp.

Referenced by AutoArray< CS_INT >::operator=(), AutoArray< CS_INT >::release(), AutoArray< CS_INT >::reset(), and AutoArray< CS_INT >::Swap().

m_DefaultConfig

string CNcbiApplicationAPI::m_DefaultConfig

private

conf parameter to AppMain

Definition at line 703 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::AppMain(), CNcbiApplicationAPI::LoadConfig(), and CNcbiApplicationAPI::SetupArgDescriptions().

m_DiagStream

unique_ptr<CNcbiOstream> CNcbiApplicationAPI::m_DiagStream

private

Opt., aux., see eDS_ToMemory.

Definition at line 687 of file ncbiapp_api.hpp.

m_DisableArgDesc

TDisableArgDesc CNcbiApplicationAPI::m_DisableArgDesc

private

Arg desc. disabled.

Definition at line 691 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::AppMain(), CNcbiApplicationAPI::CNcbiApplicationAPI(), CNcbiApplicationAPI::DisableArgDescriptions(), CNcbiApplicationAPI::SetupArgDescriptions(), CNcbiApplicationAPI::x_AddDefaultArgs(), and CNcbiApplicationAPI::x_TryInit().

m_DryRun

bool CNcbiApplicationAPI::m_DryRun

private

Dry run.

Definition at line 702 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::AppMain(), CNcbiApplicationAPI::CNcbiApplicationAPI(), CNcbiApplicationAPI::IsDryRun(), and CNcbiApplicationAPI::x_TryMain().

m_EmbeddedBuffer

template<size_t KEmbeddedSize, class TType = char>

TType CFastBuffer< KEmbeddedSize, TType >::m_EmbeddedBuffer[KEmbeddedSize]

private

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1193 of file ncbimisc.hpp.

Referenced by CFastBuffer< KEmbeddedSize, TType >::~CFastBuffer().

m_Environ

unique_ptr<CNcbiEnvironment> CNcbiApplicationAPI::m_Environ

private

Cached application env.

Definition at line 685 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::AppMain(), CNcbiApplicationAPI::CNcbiApplicationAPI(), CNcbiApplicationAPI::GetEnvironment(), and CNcbiApplicationAPI::SetEnvironment().

m_ExePath

string CNcbiApplicationAPI::m_ExePath

private

Program executable path.

Definition at line 696 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::AppMain(), and CNcbiApplicationAPI::GetProgramExecutablePath().

m_ExitCode

int CNcbiApplicationAPI::m_ExitCode

private

Exit code to force.

Definition at line 700 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::AppMain(), and CNcbiApplicationAPI::SetExitCode().

m_ExitCodeCond

EExitMode CNcbiApplicationAPI::m_ExitCodeCond

private

When to force it (if ever)

Definition at line 701 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::AppMain(), CNcbiApplicationAPI::CNcbiApplicationAPI(), and CNcbiApplicationAPI::SetExitCode().

m_Flags

template<class Enum >

storage_type CSafeFlags< Enum >::m_Flags

private

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1330 of file ncbimisc.hpp.

Referenced by CSafeFlags< Enum >::get(), CSafeFlags< Enum >::operator&=(), CSafeFlags< Enum >::operator^=(), and CSafeFlags< Enum >::operator|=().

m_Func

template<class TFunc >

TFunc CNcbiActionGuard::CAction< TFunc >::m_Func

private

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1433 of file ncbimisc.hpp.

Referenced by CNcbiActionGuard::CAction< TFunc >::Execute().

m_HideArgs

THideStdArgs CNcbiApplicationAPI::m_HideArgs

private

Std cmd.-line flags to hide.

Definition at line 692 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::CNcbiApplicationAPI(), CNcbiApplicationAPI::HideStdArgs(), and CNcbiApplicationAPI::x_AddDefaultArgs().

m_Id

template<class TKey , class TStorage >

TId CStrictId< TKey, TStorage >::m_Id

private

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 941 of file ncbimisc.hpp.

Referenced by CStrictId< SStrictId_Gi, SStrictId_Gi::TId >::Get(), CStrictId< SStrictId_Gi, SStrictId_Gi::TId >::operator!=(), CStrictId< SStrictId_Gi, SStrictId_Gi::TId >::operator+(), CStrictId< SStrictId_Gi, SStrictId_Gi::TId >::operator++(), CStrictId< SStrictId_Gi, SStrictId_Gi::TId >::operator-(), CStrictId< SStrictId_Gi, SStrictId_Gi::TId >::operator--(), CStrictId< SStrictId_Gi, SStrictId_Gi::TId >::operator<(), CStrictId< SStrictId_Gi, SStrictId_Gi::TId >::operator<=(), CStrictId< SStrictId_Gi, SStrictId_Gi::TId >::operator=(), CStrictId< SStrictId_Gi, SStrictId_Gi::TId >::operator==(), CStrictId< SStrictId_Gi, SStrictId_Gi::TId >::operator>(), CStrictId< SStrictId_Gi, SStrictId_Gi::TId >::operator>=(), and CStrictId< SStrictId_Gi, SStrictId_Gi::TId >::Set().

m_Instance

CNcbiApplicationAPI * CNcbiApplicationAPI::m_Instance = nullptr

staticprivate

Current app. instance.

Definition at line 683 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::CNcbiApplicationAPI(), CNcbiApplicationAPI::Instance(), CNcbiApplicationAPI::InstanceGuard(), and CNcbiApplicationAPI::~CNcbiApplicationAPI().

m_IsEnabled

bool IPhoneHomePolicy::m_IsEnabled

protected

Enable/disable tracking status.

Definition at line 104 of file phone_home_policy.hpp.

Referenced by IPhoneHomePolicy::IsEnabled(), and IPhoneHomePolicy::SetEnabled().

m_IsNull

template<class TValue , class TNullToValue = SThrowOnNull<TValue>>

bool CNullable< TValue, TNullToValue >::m_IsNull

private

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 736 of file ncbimisc.hpp.

Referenced by CNullable< Int8 >::GetValue(), CNullable< Int8 >::IsNull(), CNullable< unsigned short, SGetHttpDefaultRetries >::operator unsigned short(), CNullable< Int8 >::operator=(), and CNullable< Int8 >::SetValue().

m_LogFile

const char* CNcbiApplicationAPI::m_LogFile

private

Logfile if set in the command line.

Definition at line 705 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::AppMain(), CNcbiApplicationAPI::SetupDiag(), CNcbiApplicationAPI::SetupDiag_AppSpecific(), and CNcbiApplicationAPI::x_TryInit().

m_LogFileName

string CNcbiApplicationAPI::m_LogFileName

mutableprivate

Log file name.

Definition at line 698 of file ncbiapp_api.hpp.

m_LogOptions

int CNcbiApplicationAPI::m_LogOptions

private

logging of env, reg, args, path

Definition at line 706 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::x_LogOptions(), and CNcbiApplicationAPI::x_ReadLogOptions().

m_Member

template<class Base , class Member >

member_type pair_base_member< Base, Member >::m_Member

private

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 298 of file ncbimisc.hpp.

Referenced by pair_base_member< TKeyGetter, CTreeNode * >::second().

m_Msg

const SDiagMessage& ncbi::CNcbiToolkit_LogMessage::m_Msg

private

Definition at line 141 of file ncbi_toolkit.hpp.

Referenced by ncbi::CNcbiToolkit_LogMessage::ErrCode(), ncbi::CNcbiToolkit_LogMessage::ErrSubCode(), ncbi::CNcbiToolkit_LogMessage::File(), ncbi::CNcbiToolkit_LogMessage::GetNativeToolkitMessage(), ncbi::CNcbiToolkit_LogMessage::Line(), ncbi::CNcbiToolkit_LogMessage::Message(), and ncbi::CNcbiToolkit_LogMessage::Severity().

m_OnExitActions

CNcbiActionGuard CNcbiApplicationAPI::m_OnExitActions

private

Actions executed on app destruction.

Definition at line 707 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::AddOnExitAction(), and CNcbiApplicationAPI::ExecuteOnExitActions().

m_PhoneHomePolicy

IPhoneHomePolicy* CNcbiApplicationAPI::m_PhoneHomePolicy

private

Pointer to active Phone Home Policy, if any.

Definition at line 708 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::CNcbiApplicationAPI(), CNcbiApplicationAPI::GetPhoneHomePolicy(), and CNcbiApplicationAPI::SetPhoneHomePolicy().

m_PhoneHomePolicy_Ownership

ENcbiOwnership CNcbiApplicationAPI::m_PhoneHomePolicy_Ownership

private

Phone Home Policy ownersheep.

Definition at line 709 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::CNcbiApplicationAPI(), and CNcbiApplicationAPI::SetPhoneHomePolicy().

m_ProgramDisplayName

string CNcbiApplicationAPI::m_ProgramDisplayName

private

Display name of app.

Definition at line 695 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::AppMain(), CNcbiApplicationAPI::GetProgramDisplayName(), and CNcbiApplicationAPI::SetProgramDisplayName().

m_Ptr [1/2]

template<class X , class Del = Deleter<X>>

element_type* AutoPtr< X, Del >::m_Ptr

private

Internal pointer representation.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 500 of file ncbimisc.hpp.

Referenced by AutoPtr< CNcbistrstream_Base >::AutoPtr(), AutoPtr< CNcbistrstream_Base >::get(), AutoPtr< CNcbistrstream_Base >::IsOwned(), AutoPtr< CNcbistrstream_Base >::operator*(), AutoPtr< CNcbistrstream_Base >::operator->(), AutoPtr< CNcbistrstream_Base >::release(), AutoPtr< CNcbistrstream_Base >::reset(), and AutoPtr< CNcbistrstream_Base >::Swap().

m_Ptr [2/2]

template<class X , class Del = ArrayDeleter<X>>

element_type* AutoArray< X, Del >::m_Ptr

private

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 623 of file ncbimisc.hpp.

Referenced by AutoArray< CS_INT >::AutoArray(), AutoArray< CS_INT >::get(), AutoArray< CS_INT >::operator[](), AutoArray< CS_INT >::release(), AutoArray< CS_INT >::reset(), and AutoArray< CS_INT >::Swap().

m_RealExePath

string CNcbiApplicationAPI::m_RealExePath

private

Symlink-free executable path.

Definition at line 697 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::AppMain(), and CNcbiApplicationAPI::GetProgramExecutablePath().

m_Size

template<size_t KEmbeddedSize, class TType = char>

size_t CFastBuffer< KEmbeddedSize, TType >::m_Size

private

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 1191 of file ncbimisc.hpp.

Referenced by CFastBuffer< KEmbeddedSize, TType >::end(), and CFastBuffer< KEmbeddedSize, TType >::size().

m_StdioFlags

TStdioSetupFlags CNcbiApplicationAPI::m_StdioFlags

private

Std C++ I/O adjustments.

Definition at line 693 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::CNcbiApplicationAPI(), CNcbiApplicationAPI::SetStdioFlags(), and CNcbiApplicationAPI::x_SetupStdio().

m_Value [1/2]

template<class TEnum >

bool CBoolEnum< TEnum >::m_Value

private

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 322 of file ncbimisc.hpp.

Referenced by CBoolEnum< TEnum >::operator bool(), and CBoolEnum< TEnum >::operator TEnum().

m_Value [2/2]

template<class TValue , class TNullToValue = SThrowOnNull<TValue>>

TValue CNullable< TValue, TNullToValue >::m_Value

private

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbimisc.hpp.

Definition at line 737 of file ncbimisc.hpp.

Referenced by CNullable< Int8 >::GetValue(), CNullable< unsigned short, SGetHttpDefaultRetries >::operator unsigned short(), CNullable< Int8 >::operator=(), and CNullable< Int8 >::SetValue().

m_Version

CRef<CVersionAPI> CNcbiApplicationAPI::m_Version

private

Program version.

Definition at line 684 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::CNcbiApplicationAPI(), CNcbiApplicationAPI::GetFullVersion(), CNcbiApplicationAPI::GetVersion(), CNcbiApplicationAPI::SetFullVersion(), CNcbiApplicationAPI::SetVersion(), and CNcbiApplicationAPI::SetVersionByBuild().

Friends

CNcbiApplicationAPI

friend class CNcbiApplicationAPI

friend

Definition at line 118 of file ncbiapp_api.hpp.

CNcbiApplicationGuard

friend class CNcbiApplicationGuard

friend

Definition at line 406 of file ncbiapp_api.hpp.

Referenced by CNcbiApplicationAPI::InstanceGuard().

SSafeBoolTag [1/3]

template<class X , class Del = Deleter<X>>

friend struct SSafeBoolTag

friend

Definition at line 458 of file ncbimisc.hpp.

SSafeBoolTag [2/3]

template<class X , class Del = ArrayDeleter<X>>

friend struct SSafeBoolTag

friend

Definition at line 578 of file ncbimisc.hpp.

SSafeBoolTag [3/3]

template<class Enum >

friend struct SSafeBoolTag

friend

Definition at line 1274 of file ncbimisc.hpp.