NCBI C++ ToolKit
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Definition at line 190 of file Biomol_descr_.hpp.
typedef CAtom_id CAtom_pntr_Base::TAtom_id |
Definition at line 91 of file Atom_pntr_.hpp.
Definition at line 104 of file Inter_residue_bond_.hpp.
Definition at line 108 of file Intra_residue_bond_.hpp.
Definition at line 105 of file Inter_residue_bond_.hpp.
Definition at line 109 of file Intra_residue_bond_.hpp.
typedef list< CRef< CAtom > > CResidue_graph_Base::TAtoms |
Definition at line 121 of file Residue_graph_.hpp.
typedef CPub CBiomol_descr_Base::TAttribution |
Definition at line 189 of file Biomol_descr_.hpp.
Definition at line 155 of file Residue_graph_pntr_.hpp.
Definition at line 89 of file Biostruc_graph_pntr_.hpp.
Definition at line 89 of file Biost_resid_graph_set_pntr_.hpp.
Definition at line 106 of file Inter_residue_bond_.hpp.
Definition at line 110 of file Intra_residue_bond_.hpp.
typedef list< CRef< CIntra_residue_bond > > CResidue_graph_Base::TBonds |
Definition at line 122 of file Residue_graph_.hpp.
typedef CAtom_id CChiral_center_Base::TC |
Definition at line 103 of file Chiral_center_.hpp.
typedef list< CRef< CChiral_center > > CResidue_graph_Base::TChiral_centers |
Definition at line 123 of file Residue_graph_.hpp.
typedef list< CRef< CAtom_pntr > > CAtom_pntr_set_Base::Tdata |
Definition at line 89 of file Atom_pntr_set_.hpp.
typedef list< CRef< CBiomol_descr > > CBiostruc_graph_Base::TDescr |
Definition at line 106 of file Biostruc_graph_.hpp.
typedef list< CRef< CBiomol_descr > > CMolecule_graph_Base::TDescr |
Definition at line 123 of file Molecule_graph_.hpp.
typedef list< CRef< CBiomol_descr > > CResidue_graph_Base::TDescr |
Definition at line 118 of file Residue_graph_.hpp.
typedef EElement CAtom_Base::TElement |
typedef CAtom_id CAtom_Base::TId |
Definition at line 122 of file Molecule_graph_.hpp.
typedef CResidue_id CResidue_Base::TId |
Definition at line 92 of file Residue_.hpp.
Definition at line 117 of file Residue_graph_.hpp.
typedef list< CRef< CInter_residue_bond > > CBiostruc_graph_Base::TInter_molecule_bonds |
Definition at line 108 of file Biostruc_graph_.hpp.
typedef list< CRef< CInter_residue_bond > > CMolecule_graph_Base::TInter_residue_bonds |
Definition at line 126 of file Molecule_graph_.hpp.
typedef list< string > CAtom_Base::TIupac_code |
typedef list< string > CResidue_graph_Base::TIupac_code |
Definition at line 120 of file Residue_graph_.hpp.
Definition at line 154 of file Residue_graph_pntr_.hpp.
Definition at line 100 of file Atom_pntr_.hpp.
Definition at line 98 of file Biost_resid_graph_set_pntr_.hpp.
Definition at line 119 of file Biostruc_graph_.hpp.
Definition at line 98 of file Biostruc_graph_pntr_.hpp.
Definition at line 118 of file Chiral_center_.hpp.
Definition at line 115 of file Inter_residue_bond_.hpp.
Definition at line 119 of file Intra_residue_bond_.hpp.
Definition at line 139 of file Molecule_graph_.hpp.
Definition at line 103 of file Residue_.hpp.
Definition at line 136 of file Residue_graph_.hpp.
typedef list< CRef< CMolecule_graph > > CBiostruc_graph_Base::TMolecule_graphs |
Definition at line 107 of file Biostruc_graph_.hpp.
Definition at line 89 of file Atom_pntr_.hpp.
Definition at line 191 of file Biomol_descr_.hpp.
typedef CAtom_id CChiral_center_Base::TN1 |
Definition at line 104 of file Chiral_center_.hpp.
typedef CAtom_id CChiral_center_Base::TN2 |
Definition at line 105 of file Chiral_center_.hpp.
typedef CAtom_id CChiral_center_Base::TN3 |
Definition at line 106 of file Chiral_center_.hpp.
typedef string CAtom_Base::TName |
typedef string CBiomol_descr_Base::TName |
Definition at line 183 of file Biomol_descr_.hpp.
typedef string CResidue_Base::TName |
Definition at line 93 of file Residue_.hpp.
Definition at line 188 of file Biomol_descr_.hpp.
Definition at line 187 of file Biomol_descr_.hpp.
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Definition at line 67 of file Atom_id.hpp.
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Definition at line 70 of file Atom_id_.hpp.
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Definition at line 67 of file Atom_pntr.hpp.
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Definition at line 78 of file Atom_pntr_.hpp.
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Definition at line 67 of file Atom_pntr_set.hpp.
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Definition at line 78 of file Atom_pntr_set_.hpp.
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Definition at line 67 of file Biomol_descr.hpp.
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Definition at line 84 of file Biomol_descr_.hpp.
Definition at line 67 of file Biost_resid_graph_set_pntr.hpp.
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Definition at line 78 of file Biost_resid_graph_set_pntr_.hpp.
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Definition at line 67 of file Biostruc_graph.hpp.
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Definition at line 95 of file Biostruc_graph_.hpp.
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Definition at line 67 of file Biostruc_graph_pntr.hpp.
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Definition at line 78 of file Biostruc_graph_pntr_.hpp.
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Definition at line 67 of file Chiral_center.hpp.
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Definition at line 84 of file Chiral_center_.hpp.
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Definition at line 67 of file Inter_residue_bond.hpp.
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Definition at line 80 of file Inter_residue_bond_.hpp.
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Definition at line 67 of file Intra_residue_bond.hpp.
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Definition at line 84 of file Intra_residue_bond_.hpp.
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Definition at line 67 of file Molecule_graph.hpp.
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Definition at line 111 of file Molecule_graph_.hpp.
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Definition at line 67 of file Molecule_id.hpp.
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Definition at line 70 of file Molecule_id_.hpp.
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Definition at line 67 of file PCSubstance_id.hpp.
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Definition at line 71 of file PCSubstance_id_.hpp.
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Definition at line 67 of file Residue.hpp.
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Definition at line 81 of file Residue_.hpp.
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Definition at line 67 of file Residue_graph.hpp.
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Definition at line 96 of file Residue_graph_.hpp.
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Definition at line 67 of file Residue_graph_id.hpp.
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Definition at line 70 of file Residue_graph_id_.hpp.
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Definition at line 67 of file Residue_graph_pntr.hpp.
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Definition at line 83 of file Residue_graph_pntr_.hpp.
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Definition at line 67 of file Residue_id.hpp.
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Definition at line 70 of file Residue_id_.hpp.
typedef string CBiomol_descr_Base::TPdb_class |
Definition at line 184 of file Biomol_descr_.hpp.
Definition at line 186 of file Biomol_descr_.hpp.
Definition at line 185 of file Biomol_descr_.hpp.
Definition at line 94 of file Residue_.hpp.
Definition at line 90 of file Biost_resid_graph_set_pntr_.hpp.
Definition at line 90 of file Biostruc_graph_pntr_.hpp.
typedef list< CRef< CResidue_graph > > CBiostruc_graph_Base::TResidue_graphs |
Definition at line 109 of file Biostruc_graph_.hpp.
Definition at line 90 of file Atom_pntr_.hpp.
typedef list< CRef< CResidue > > CMolecule_graph_Base::TResidue_sequence |
Definition at line 125 of file Molecule_graph_.hpp.
Definition at line 119 of file Residue_graph_.hpp.
typedef CSeq_id CMolecule_graph_Base::TSeq_id |
Definition at line 124 of file Molecule_graph_.hpp.
Definition at line 127 of file Molecule_graph_.hpp.
typedef ESign CChiral_center_Base::TSign |
Definition at line 107 of file Chiral_center_.hpp.
Definition at line 156 of file Residue_graph_pntr_.hpp.
Choice variants.
Enumerator | |
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e_not_set | No variant selected. |
e_Name | |
e_Pdb_class | |
e_Pdb_source | |
e_Pdb_comment | |
e_Other_comment | |
e_Organism | |
e_Attribution | |
e_Assembly_type | |
e_Molecule_type |
Definition at line 118 of file Biomol_descr_.hpp.
Choice variants.
Enumerator | |
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e_not_set | No variant selected. |
e_Local | |
e_Biostruc | |
e_Standard |
Definition at line 95 of file Residue_graph_pntr_.hpp.
Maximum+1 value of the choice variant enumerator.
Enumerator | |
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e_MaxChoice | == e_Molecule_type+1 |
Definition at line 131 of file Biomol_descr_.hpp.
Maximum+1 value of the choice variant enumerator.
Enumerator | |
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e_MaxChoice | == e_Standard+1 |
Definition at line 102 of file Residue_graph_pntr_.hpp.
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Enumerator | |
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e__allMandatory | |
e_molecule_id | |
e_residue_id | |
e_atom_id |
Definition at line 94 of file Atom_pntr_.hpp.
Enumerator | |
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e__allMandatory | |
e_biostruc_residue_graph_set_id | |
e_residue_graph_id |
Definition at line 93 of file Biost_resid_graph_set_pntr_.hpp.
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Enumerator | |
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e__allMandatory | |
e_descr | |
e_molecule_graphs | |
e_inter_molecule_bonds | |
e_residue_graphs |
Definition at line 112 of file Biostruc_graph_.hpp.
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Enumerator | |
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e__allMandatory | |
e_biostruc_id | |
e_residue_graph_id |
Definition at line 93 of file Biostruc_graph_pntr_.hpp.
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Enumerator | |
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e__allMandatory | |
e_c | |
e_n1 | |
e_n2 | |
e_n3 | |
e_sign |
Definition at line 110 of file Chiral_center_.hpp.
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Enumerator | |
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e__allMandatory | |
e_atom_id_1 | |
e_atom_id_2 | |
e_bond_order |
Definition at line 109 of file Inter_residue_bond_.hpp.
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Enumerator | |
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e__allMandatory | |
e_atom_id_1 | |
e_atom_id_2 | |
e_bond_order |
Definition at line 113 of file Intra_residue_bond_.hpp.
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Enumerator | |
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e__allMandatory | |
e_id | |
e_descr | |
e_seq_id | |
e_residue_sequence | |
e_inter_residue_bonds | |
e_sid |
Definition at line 130 of file Molecule_graph_.hpp.
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Enumerator | |
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e__allMandatory | |
e_id | |
e_name | |
e_residue_graph |
Definition at line 97 of file Residue_.hpp.
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Enumerator | |
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e__allMandatory | |
e_id | |
e_descr | |
e_residue_type | |
e_iupac_code | |
e_atoms | |
e_bonds | |
e_chiral_centers |
Definition at line 126 of file Residue_graph_.hpp.
Enumerator | |
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eAssembly_type_physiological_form | |
eAssembly_type_crystallographic_cell | |
eAssembly_type_other |
Definition at line 94 of file Biomol_descr_.hpp.
Enumerator | |
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eBond_order_single | |
eBond_order_partial_double | |
eBond_order_aromatic | |
eBond_order_double | |
eBond_order_triple | |
eBond_order_other | |
eBond_order_unknown |
Definition at line 90 of file Inter_residue_bond_.hpp.
Enumerator | |
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eBond_order_single | |
eBond_order_partial_double | |
eBond_order_aromatic | |
eBond_order_double | |
eBond_order_triple | |
eBond_order_other | |
eBond_order_unknown |
Definition at line 94 of file Intra_residue_bond_.hpp.
enum CAtom_Base::EElement |
Enumerator | |
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eMolecule_type_dna | |
eMolecule_type_rna | |
eMolecule_type_protein | |
eMolecule_type_other_biopolymer | |
eMolecule_type_solvent | |
eMolecule_type_other_nonpolymer | |
eMolecule_type_other |
Definition at line 103 of file Biomol_descr_.hpp.
Enumerator | |
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eResidue_type_deoxyribonucleotide | |
eResidue_type_ribonucleotide | |
eResidue_type_amino_acid | |
eResidue_type_other |
Definition at line 106 of file Residue_graph_.hpp.
Enumerator | |
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eSign_positive | |
eSign_negative |
Definition at line 94 of file Chiral_center_.hpp.
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Check if it is safe to call Get method.
Definition at line 158 of file Atom_pntr_set_.hpp.
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Check if it is safe to call GetAtom_id method.
Definition at line 332 of file Atom_pntr_.hpp.
References CAtom_pntr_Base::IsSetAtom_id().
Referenced by CAtom_pntr_Base::GetAtom_id().
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Check if it is safe to call GetAtom_id_1 method.
Definition at line 263 of file Inter_residue_bond_.hpp.
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Check if it is safe to call GetAtom_id_1 method.
Definition at line 267 of file Intra_residue_bond_.hpp.
References CIntra_residue_bond_Base::IsSetAtom_id_1().
Referenced by CIntra_residue_bond_Base::GetAtom_id_1().
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Check if it is safe to call GetAtom_id_2 method.
Definition at line 293 of file Inter_residue_bond_.hpp.
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Check if it is safe to call GetAtom_id_2 method.
Definition at line 309 of file Intra_residue_bond_.hpp.
References CIntra_residue_bond_Base::IsSetAtom_id_2().
Referenced by CIntra_residue_bond_Base::GetAtom_id_2().
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Check if it is safe to call GetAtoms method.
Definition at line 545 of file Residue_graph_.hpp.
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Check if it is safe to call GetBiostruc_id method.
Definition at line 208 of file Biostruc_graph_pntr_.hpp.
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Check if it is safe to call GetBiostruc_residue_graph_set_id method.
Definition at line 208 of file Biost_resid_graph_set_pntr_.hpp.
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Check if it is safe to call GetBond_order method.
Definition at line 323 of file Inter_residue_bond_.hpp.
References CInter_residue_bond_Base::IsSetBond_order().
Referenced by CInter_residue_bond_Base::GetBond_order().
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Check if it is safe to call GetBond_order method.
Definition at line 351 of file Intra_residue_bond_.hpp.
References CIntra_residue_bond_Base::IsSetBond_order().
Referenced by CIntra_residue_bond_Base::GetBond_order().
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Check if it is safe to call GetBonds method.
Definition at line 570 of file Residue_graph_.hpp.
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Check if it is safe to call GetC method.
Definition at line 342 of file Chiral_center_.hpp.
References CChiral_center_Base::IsSetC().
Referenced by CChiral_center_Base::GetC().
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Check if it is safe to call GetChiral_centers method.
Definition at line 595 of file Residue_graph_.hpp.
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Check if it is safe to call GetDescr method.
Definition at line 281 of file Biostruc_graph_.hpp.
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Check if it is safe to call GetDescr method.
Definition at line 425 of file Molecule_graph_.hpp.
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Check if it is safe to call GetDescr method.
Definition at line 448 of file Residue_graph_.hpp.
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Check if it is safe to call GetElement method.
Definition at line 565 of file Atom_.hpp.
References CAtom_Base::IsSetElement().
Referenced by CAtom_Base::GetElement().
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Check if it is safe to call GetId method.
Definition at line 451 of file Atom_.hpp.
References CAtom_Base::IsSetId().
Referenced by CAtom_Base::GetId().
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Check if it is safe to call GetId method.
Definition at line 383 of file Molecule_graph_.hpp.
References CMolecule_graph_Base::IsSetId().
Referenced by CMolecule_graph_Base::GetId().
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Check if it is safe to call GetId method.
Definition at line 252 of file Residue_.hpp.
References CResidue_Base::IsSetId().
Referenced by CResidue_Base::GetId().
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Check if it is safe to call GetId method.
Definition at line 406 of file Residue_graph_.hpp.
References CResidue_graph_Base::IsSetId().
Referenced by CResidue_graph_Base::GetId().
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Check if it is safe to call GetInter_molecule_bonds method.
Definition at line 331 of file Biostruc_graph_.hpp.
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Check if it is safe to call GetInter_residue_bonds method.
Definition at line 496 of file Molecule_graph_.hpp.
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Check if it is safe to call GetIonizable_proton method.
Definition at line 612 of file Atom_.hpp.
References CAtom_Base::IsSetIonizable_proton().
Referenced by CAtom_Base::GetIonizable_proton().
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Check if it is safe to call GetIupac_code method.
Definition at line 520 of file Residue_graph_.hpp.
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Check if it is safe to call GetMolecule_graphs method.
Definition at line 306 of file Biostruc_graph_.hpp.
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Check if it is safe to call GetMolecule_id method.
Definition at line 248 of file Atom_pntr_.hpp.
References CAtom_pntr_Base::IsSetMolecule_id().
Referenced by CAtom_pntr_Base::GetMolecule_id().
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Check if it is safe to call GetN1 method.
Definition at line 384 of file Chiral_center_.hpp.
References CChiral_center_Base::IsSetN1().
Referenced by CChiral_center_Base::GetN1().
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Check if it is safe to call GetN2 method.
Definition at line 426 of file Chiral_center_.hpp.
References CChiral_center_Base::IsSetN2().
Referenced by CChiral_center_Base::GetN2().
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Check if it is safe to call GetN3 method.
Definition at line 468 of file Chiral_center_.hpp.
References CChiral_center_Base::IsSetN3().
Referenced by CChiral_center_Base::GetN3().
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Check if it is safe to call GetName method.
Definition at line 493 of file Atom_.hpp.
References CAtom_Base::IsSetName().
Referenced by CAtom_Base::GetName().
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Check if it is safe to call GetName method.
Definition at line 294 of file Residue_.hpp.
References CResidue_Base::IsSetName().
Referenced by CResidue_Base::GetName().
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Check if it is safe to call GetResidue_graph method.
Definition at line 341 of file Residue_.hpp.
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Check if it is safe to call GetResidue_graph_id method.
Definition at line 238 of file Biost_resid_graph_set_pntr_.hpp.
References CBiostruc_residue_graph_set_pntr_Base::IsSetResidue_graph_id().
Referenced by CBiostruc_residue_graph_set_pntr_Base::GetResidue_graph_id().
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Check if it is safe to call GetResidue_graph_id method.
Definition at line 238 of file Biostruc_graph_pntr_.hpp.
References CBiostruc_graph_pntr_Base::IsSetResidue_graph_id().
Referenced by CBiostruc_graph_pntr_Base::GetResidue_graph_id().
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Check if it is safe to call GetResidue_graphs method.
Definition at line 356 of file Biostruc_graph_.hpp.
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Check if it is safe to call GetResidue_id method.
Definition at line 290 of file Atom_pntr_.hpp.
References CAtom_pntr_Base::IsSetResidue_id().
Referenced by CAtom_pntr_Base::GetResidue_id().
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Check if it is safe to call GetResidue_sequence method.
Definition at line 471 of file Molecule_graph_.hpp.
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Check if it is safe to call GetResidue_type method.
Definition at line 473 of file Residue_graph_.hpp.
References CResidue_graph_Base::IsSetResidue_type().
Referenced by CResidue_graph_Base::GetResidue_type().
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Check if it is safe to call GetSeq_id method.
Definition at line 450 of file Molecule_graph_.hpp.
References CMolecule_graph_Base::IsSetSeq_id().
Referenced by CMolecule_graph_Base::GetSeq_id().
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Check if it is safe to call GetSid method.
Definition at line 521 of file Molecule_graph_.hpp.
References CMolecule_graph_Base::IsSetSid().
Referenced by CMolecule_graph_Base::GetSid().
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Check if it is safe to call GetSign method.
Definition at line 510 of file Chiral_center_.hpp.
References CChiral_center_Base::IsSetSign().
Referenced by CChiral_center_Base::GetSign().
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END_CLASS_INFO CAtom_Base::CAtom_Base | ( | void | ) |
Definition at line 208 of file Atom_.cpp.
References CAtom_Base::m_set_State.
Explicit constructor from the primitive type.
Definition at line 72 of file Atom_id.hpp.
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Definition at line 69 of file Atom_id.hpp.
Definition at line 96 of file Atom_id_.hpp.
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Definition at line 91 of file Atom_id_.hpp.
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Definition at line 86 of file Atom_pntr.hpp.
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END_CLASS_INFO CAtom_pntr_Base::CAtom_pntr_Base | ( | void | ) |
Definition at line 70 of file Atom_pntr_.cpp.
References CAtom_pntr_Base::m_set_State.
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Definition at line 86 of file Atom_pntr_set.hpp.
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END_CLASS_INFO CAtom_pntr_set_Base::CAtom_pntr_set_Base | ( | void | ) |
Definition at line 68 of file Atom_pntr_set_.cpp.
References CAtom_pntr_set_Base::m_set_State.
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Definition at line 86 of file Biomol_descr.hpp.
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END_CHOICE_INFO CBiomol_descr_Base::CBiomol_descr_Base | ( | void | ) |
Definition at line 248 of file Biomol_descr_.cpp.
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Definition at line 86 of file Biostruc_graph.hpp.
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END_CLASS_INFO CBiostruc_graph_Base::CBiostruc_graph_Base | ( | void | ) |
Definition at line 100 of file Biostruc_graph_.cpp.
References CBiostruc_graph_Base::m_set_State.
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Definition at line 86 of file Biostruc_graph_pntr.hpp.
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END_CLASS_INFO CBiostruc_graph_pntr_Base::CBiostruc_graph_pntr_Base | ( | void | ) |
Definition at line 83 of file Biostruc_graph_pntr_.cpp.
References CObject::IsAllocatedInPool(), CBiostruc_graph_pntr_Base::m_set_State, and CBiostruc_graph_pntr_Base::ResetBiostruc_id().
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Definition at line 86 of file Biost_resid_graph_set_pntr.hpp.
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END_CLASS_INFO CBiostruc_residue_graph_set_pntr_Base::CBiostruc_residue_graph_set_pntr_Base | ( | void | ) |
Definition at line 83 of file Biost_resid_graph_set_pntr_.cpp.
References CObject::IsAllocatedInPool(), CBiostruc_residue_graph_set_pntr_Base::m_set_State, and CBiostruc_residue_graph_set_pntr_Base::ResetBiostruc_residue_graph_set_id().
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Definition at line 86 of file Chiral_center.hpp.
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END_CLASS_INFO CChiral_center_Base::CChiral_center_Base | ( | void | ) |
Definition at line 83 of file Chiral_center_.cpp.
References CChiral_center_Base::m_set_State.
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Verify selection, throw exception if it differs from the expected.
index | Expected selection. |
Definition at line 473 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::m_choice, and CBiomol_descr_Base::ThrowInvalidSelection().
Referenced by CBiomol_descr_Base::GetAssembly_type(), CBiomol_descr_Base::GetAttribution(), CBiomol_descr_Base::GetMolecule_type(), CBiomol_descr_Base::GetName(), CBiomol_descr_Base::GetOrganism(), CBiomol_descr_Base::GetOther_comment(), CBiomol_descr_Base::GetPdb_class(), CBiomol_descr_Base::GetPdb_comment(), and CBiomol_descr_Base::GetPdb_source().
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Verify selection, throw exception if it differs from the expected.
index | Expected selection. |
Definition at line 274 of file Residue_graph_pntr_.hpp.
References CResidue_graph_pntr_Base::m_choice, and CResidue_graph_pntr_Base::ThrowInvalidSelection().
Referenced by CResidue_graph_pntr_Base::GetBiostruc(), CResidue_graph_pntr_Base::GetLocal(), and CResidue_graph_pntr_Base::GetStandard().
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Definition at line 86 of file Inter_residue_bond.hpp.
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END_CLASS_INFO CInter_residue_bond_Base::CInter_residue_bond_Base | ( | void | ) |
Definition at line 113 of file Inter_residue_bond_.cpp.
References CObject::IsAllocatedInPool(), CInter_residue_bond_Base::m_set_State, CInter_residue_bond_Base::ResetAtom_id_1(), and CInter_residue_bond_Base::ResetAtom_id_2().
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Definition at line 86 of file Intra_residue_bond.hpp.
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END_CLASS_INFO CIntra_residue_bond_Base::CIntra_residue_bond_Base | ( | void | ) |
Definition at line 84 of file Intra_residue_bond_.cpp.
References CIntra_residue_bond_Base::m_set_State.
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Definition at line 86 of file Molecule_graph.hpp.
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END_CLASS_INFO CMolecule_graph_Base::CMolecule_graph_Base | ( | void | ) |
Definition at line 115 of file Molecule_graph_.cpp.
References CMolecule_graph_Base::m_set_State.
Explicit constructor from the primitive type.
Definition at line 72 of file Molecule_id.hpp.
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Definition at line 69 of file Molecule_id.hpp.
Definition at line 96 of file Molecule_id_.hpp.
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Definition at line 91 of file Molecule_id_.hpp.
Explicit constructor from the primitive type.
Definition at line 72 of file PCSubstance_id.hpp.
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Definition at line 69 of file PCSubstance_id.hpp.
Definition at line 97 of file PCSubstance_id_.hpp.
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Definition at line 92 of file PCSubstance_id_.hpp.
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Definition at line 86 of file Residue.hpp.
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END_CLASS_INFO CResidue_Base::CResidue_Base | ( | void | ) |
Definition at line 91 of file Residue_.cpp.
References CObject::IsAllocatedInPool(), CResidue_Base::m_set_State, and CResidue_Base::ResetResidue_graph().
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Definition at line 86 of file Residue_graph.hpp.
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END_CLASS_INFO CResidue_graph_Base::CResidue_graph_Base | ( | void | ) |
Definition at line 123 of file Residue_graph_.cpp.
References CResidue_graph_Base::m_set_State.
Explicit constructor from the primitive type.
Definition at line 72 of file Residue_graph_id.hpp.
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Definition at line 69 of file Residue_graph_id.hpp.
Definition at line 96 of file Residue_graph_id_.hpp.
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Definition at line 91 of file Residue_graph_id_.hpp.
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Definition at line 86 of file Residue_graph_pntr.hpp.
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END_CHOICE_INFO CResidue_graph_pntr_Base::CResidue_graph_pntr_Base | ( | void | ) |
Definition at line 174 of file Residue_graph_pntr_.cpp.
Explicit constructor from the primitive type.
Definition at line 72 of file Residue_id.hpp.
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Definition at line 69 of file Residue_id.hpp.
Definition at line 96 of file Residue_id_.hpp.
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Definition at line 91 of file Residue_id_.hpp.
CAtom_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CAtom_pntr_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CAtom_pntr_set_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBiomol_descr_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBiostruc_residue_graph_set_pntr_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBiostruc_graph_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBiostruc_graph_pntr_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CChiral_center_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CInter_residue_bond_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CIntra_residue_bond_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CMolecule_graph_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CResidue_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CResidue_graph_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CResidue_graph_pntr_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CAtom_id_Base::DECLARE_STD_ALIAS_TYPE_INFO | ( | ) |
CMolecule_id_Base::DECLARE_STD_ALIAS_TYPE_INFO | ( | ) |
CPCSubstance_id_Base::DECLARE_STD_ALIAS_TYPE_INFO | ( | ) |
CResidue_graph_id_Base::DECLARE_STD_ALIAS_TYPE_INFO | ( | ) |
CResidue_id_Base::DECLARE_STD_ALIAS_TYPE_INFO | ( | ) |
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Definition at line 102 of file Biomol_descr_.cpp.
References CObject::AddReference(), CBiomol_descr_Base::e_Assembly_type, CBiomol_descr_Base::e_Attribution, CBiomol_descr_Base::e_Molecule_type, CBiomol_descr_Base::e_Name, CBiomol_descr_Base::e_Organism, CBiomol_descr_Base::e_Other_comment, CBiomol_descr_Base::e_Pdb_class, CBiomol_descr_Base::e_Pdb_comment, CBiomol_descr_Base::e_Pdb_source, CBiomol_descr_Base::m_Assembly_type, CBiomol_descr_Base::m_choice, CBiomol_descr_Base::m_Molecule_type, CBiomol_descr_Base::m_object, and CBiomol_descr_Base::m_string.
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Definition at line 74 of file Residue_graph_pntr_.cpp.
References CObject::AddReference(), CResidue_graph_pntr_Base::e_Biostruc, CResidue_graph_pntr_Base::e_Local, CResidue_graph_pntr_Base::e_Standard, CResidue_graph_pntr_Base::m_choice, CResidue_graph_pntr_Base::m_Local, and CResidue_graph_pntr_Base::m_object.
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Access to EAssembly_type's attributes (values, names) as defined in spec.
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Access to EBond_order's attributes (values, names) as defined in spec.
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Access to EBond_order's attributes (values, names) as defined in spec.
|
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Access to EElement's attributes (values, names) as defined in spec.
|
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Access to EIonizable_proton's attributes (values, names) as defined in spec.
|
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Access to EMolecule_type's attributes (values, names) as defined in spec.
|
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Access to EResidue_type's attributes (values, names) as defined in spec.
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Access to ESign's attributes (values, names) as defined in spec.
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Get the member data.
Definition at line 164 of file Atom_pntr_set_.hpp.
References CAtom_pntr_set_Base::m_data.
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Get the variant data.
Definition at line 614 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::CheckSelected(), CBiomol_descr_Base::e_Assembly_type, and CBiomol_descr_Base::m_Assembly_type.
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Get the Atom_id member data.
Definition at line 345 of file Atom_pntr_.hpp.
References CAtom_pntr_Base::CanGetAtom_id(), CAtom_pntr_Base::m_Atom_id, and CSerialObject::ThrowUnassigned().
Referenced by ChemicalGraph::CheckForDisulfide(), and MakeBond().
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Get the Atom_id_1 member data.
Definition at line 269 of file Inter_residue_bond_.hpp.
References CInter_residue_bond_Base::m_Atom_id_1, and CInter_residue_bond_Base::ResetAtom_id_1().
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Get the Atom_id_1 member data.
Definition at line 280 of file Intra_residue_bond_.hpp.
References CIntra_residue_bond_Base::CanGetAtom_id_1(), CIntra_residue_bond_Base::m_Atom_id_1, and CSerialObject::ThrowUnassigned().
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Get the Atom_id_2 member data.
Definition at line 299 of file Inter_residue_bond_.hpp.
References CInter_residue_bond_Base::m_Atom_id_2, and CInter_residue_bond_Base::ResetAtom_id_2().
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Get the Atom_id_2 member data.
Definition at line 322 of file Intra_residue_bond_.hpp.
References CIntra_residue_bond_Base::CanGetAtom_id_2(), CIntra_residue_bond_Base::m_Atom_id_2, and CSerialObject::ThrowUnassigned().
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Get the Atoms member data.
Definition at line 551 of file Residue_graph_.hpp.
References CResidue_graph_Base::m_Atoms.
Referenced by Residue::Residue().
const CBiomol_descr_Base::TAttribution & CBiomol_descr_Base::GetAttribution | ( | void | ) | const |
Get the variant data.
Definition at line 205 of file Biomol_descr_.cpp.
References CBiomol_descr_Base::CheckSelected(), CBiomol_descr_Base::e_Attribution, and CBiomol_descr_Base::m_object.
const CResidue_graph_pntr_Base::TBiostruc & CResidue_graph_pntr_Base::GetBiostruc | ( | void | ) | const |
Get the variant data.
Definition at line 115 of file Residue_graph_pntr_.cpp.
References CResidue_graph_pntr_Base::CheckSelected(), CResidue_graph_pntr_Base::e_Biostruc, and CResidue_graph_pntr_Base::m_object.
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Get the Biostruc_id member data.
Definition at line 214 of file Biostruc_graph_pntr_.hpp.
References CBiostruc_graph_pntr_Base::m_Biostruc_id, and CBiostruc_graph_pntr_Base::ResetBiostruc_id().
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Get the Biostruc_residue_graph_set_id member data.
Definition at line 214 of file Biost_resid_graph_set_pntr_.hpp.
References CBiostruc_residue_graph_set_pntr_Base::m_Biostruc_residue_graph_set_id, and CBiostruc_residue_graph_set_pntr_Base::ResetBiostruc_residue_graph_set_id().
Referenced by Residue::Residue().
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Get the Bond_order member data.
Definition at line 336 of file Inter_residue_bond_.hpp.
References CInter_residue_bond_Base::CanGetBond_order(), CInter_residue_bond_Base::m_Bond_order, and CSerialObject::ThrowUnassigned().
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Get the Bond_order member data.
Definition at line 364 of file Intra_residue_bond_.hpp.
References CIntra_residue_bond_Base::CanGetBond_order(), CIntra_residue_bond_Base::m_Bond_order, and CSerialObject::ThrowUnassigned().
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Get the Bonds member data.
Definition at line 576 of file Residue_graph_.hpp.
References CResidue_graph_Base::m_Bonds.
Referenced by Residue::Residue().
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Get the C member data.
Definition at line 355 of file Chiral_center_.hpp.
References CChiral_center_Base::CanGetC(), CChiral_center_Base::m_C, and CSerialObject::ThrowUnassigned().
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Get the Chiral_centers member data.
Definition at line 601 of file Residue_graph_.hpp.
References CResidue_graph_Base::m_Chiral_centers.
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Get the Descr member data.
Definition at line 287 of file Biostruc_graph_.hpp.
References CBiostruc_graph_Base::m_Descr.
Referenced by ChemicalGraph::ChemicalGraph().
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Get the Descr member data.
Definition at line 431 of file Molecule_graph_.hpp.
References CMolecule_graph_Base::m_Descr.
Referenced by Molecule::Molecule().
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Get the Descr member data.
Definition at line 454 of file Residue_graph_.hpp.
References CResidue_graph_Base::m_Descr.
Referenced by Residue::Residue().
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Get the Element member data.
Definition at line 578 of file Atom_.hpp.
References CAtom_Base::CanGetElement(), CAtom_Base::m_Element, and CSerialObject::ThrowUnassigned().
Referenced by ClassifyAtom(), and Residue::Residue().
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Get the Id member data.
Definition at line 464 of file Atom_.hpp.
References CAtom_Base::CanGetId(), CAtom_Base::m_Id, and CSerialObject::ThrowUnassigned().
Referenced by Residue::Residue().
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Get the Id member data.
Definition at line 396 of file Molecule_graph_.hpp.
References CMolecule_graph_Base::CanGetId(), CMolecule_graph_Base::m_Id, and CSerialObject::ThrowUnassigned().
Referenced by Molecule::Molecule().
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Get the Id member data.
Definition at line 265 of file Residue_.hpp.
References CResidue_Base::CanGetId(), CResidue_Base::m_Id, and CSerialObject::ThrowUnassigned().
Referenced by Residue::Residue().
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Get the Id member data.
Definition at line 419 of file Residue_graph_.hpp.
References CResidue_graph_Base::CanGetId(), CResidue_graph_Base::m_Id, and CSerialObject::ThrowUnassigned().
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Get the Inter_molecule_bonds member data.
Definition at line 337 of file Biostruc_graph_.hpp.
References CBiostruc_graph_Base::m_Inter_molecule_bonds.
Referenced by ChemicalGraph::ChemicalGraph().
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Get the Inter_residue_bonds member data.
Definition at line 502 of file Molecule_graph_.hpp.
References CMolecule_graph_Base::m_Inter_residue_bonds.
Referenced by Molecule::Molecule().
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Get the Ionizable_proton member data.
Definition at line 625 of file Atom_.hpp.
References CAtom_Base::CanGetIonizable_proton(), CAtom_Base::m_Ionizable_proton, and CSerialObject::ThrowUnassigned().
Referenced by Residue::Residue().
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Get the Iupac_code member data.
Definition at line 546 of file Atom_.hpp.
References CAtom_Base::m_Iupac_code.
Referenced by ClassifyAtom(), and Residue::Residue().
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Get the Iupac_code member data.
Definition at line 526 of file Residue_graph_.hpp.
References CResidue_graph_Base::m_Iupac_code.
Referenced by Residue::Residue().
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Get the variant data.
Definition at line 303 of file Residue_graph_pntr_.hpp.
References CResidue_graph_pntr_Base::CheckSelected(), CResidue_graph_pntr_Base::e_Local, and CResidue_graph_pntr_Base::m_Local.
Referenced by Residue::Residue().
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Get the Molecule_graphs member data.
Definition at line 312 of file Biostruc_graph_.hpp.
References CBiostruc_graph_Base::m_Molecule_graphs.
Referenced by ChemicalGraph::ChemicalGraph(), CreateMimeFromBiostruc(), and UpdateViewer::ImportStructure().
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Get the Molecule_id member data.
Definition at line 261 of file Atom_pntr_.hpp.
References CAtom_pntr_Base::CanGetMolecule_id(), CAtom_pntr_Base::m_Molecule_id, and CSerialObject::ThrowUnassigned().
Referenced by ChemicalGraph::CheckForDisulfide(), and MakeBond().
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Get the variant data.
Definition at line 641 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::CheckSelected(), CBiomol_descr_Base::e_Molecule_type, and CBiomol_descr_Base::m_Molecule_type.
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Get the N1 member data.
Definition at line 397 of file Chiral_center_.hpp.
References CChiral_center_Base::CanGetN1(), CChiral_center_Base::m_N1, and CSerialObject::ThrowUnassigned().
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Get the N2 member data.
Definition at line 439 of file Chiral_center_.hpp.
References CChiral_center_Base::CanGetN2(), CChiral_center_Base::m_N2, and CSerialObject::ThrowUnassigned().
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Get the N3 member data.
Definition at line 481 of file Chiral_center_.hpp.
References CChiral_center_Base::CanGetN3(), CChiral_center_Base::m_N3, and CSerialObject::ThrowUnassigned().
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Get the Name member data.
Definition at line 499 of file Atom_.hpp.
References CAtom_Base::CanGetName(), CAtom_Base::m_Name, and CSerialObject::ThrowUnassigned().
Referenced by Residue::Residue().
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Get the variant data.
Definition at line 502 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::CheckSelected(), CBiomol_descr_Base::e_Name, and CBiomol_descr_Base::m_string.
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Get the Name member data.
Definition at line 300 of file Residue_.hpp.
References CResidue_Base::CanGetName(), CResidue_Base::m_Name, and CSerialObject::ThrowUnassigned().
Referenced by Residue::Residue().
const CBiomol_descr_Base::TOrganism & CBiomol_descr_Base::GetOrganism | ( | void | ) | const |
Get the variant data.
Definition at line 183 of file Biomol_descr_.cpp.
References CBiomol_descr_Base::CheckSelected(), CBiomol_descr_Base::e_Organism, and CBiomol_descr_Base::m_object.
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Get the variant data.
Definition at line 582 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::CheckSelected(), CBiomol_descr_Base::e_Other_comment, and CBiomol_descr_Base::m_string.
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Get the variant data.
Definition at line 522 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::CheckSelected(), CBiomol_descr_Base::e_Pdb_class, and CBiomol_descr_Base::m_string.
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Get the variant data.
Definition at line 562 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::CheckSelected(), CBiomol_descr_Base::e_Pdb_comment, and CBiomol_descr_Base::m_string.
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Get the variant data.
Definition at line 542 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::CheckSelected(), CBiomol_descr_Base::e_Pdb_source, and CBiomol_descr_Base::m_string.
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Get the Residue_graph member data.
Definition at line 347 of file Residue_.hpp.
References CResidue_Base::m_Residue_graph, and CResidue_Base::ResetResidue_graph().
Referenced by Residue::Residue().
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Get the Residue_graph_id member data.
Definition at line 251 of file Biost_resid_graph_set_pntr_.hpp.
References CBiostruc_residue_graph_set_pntr_Base::CanGetResidue_graph_id(), CBiostruc_residue_graph_set_pntr_Base::m_Residue_graph_id, and CSerialObject::ThrowUnassigned().
Referenced by Residue::Residue().
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Get the Residue_graph_id member data.
Definition at line 251 of file Biostruc_graph_pntr_.hpp.
References CBiostruc_graph_pntr_Base::CanGetResidue_graph_id(), CBiostruc_graph_pntr_Base::m_Residue_graph_id, and CSerialObject::ThrowUnassigned().
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Get the Residue_graphs member data.
Definition at line 362 of file Biostruc_graph_.hpp.
References CBiostruc_graph_Base::m_Residue_graphs.
Referenced by ChemicalGraph::ChemicalGraph().
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Get the Residue_id member data.
Definition at line 303 of file Atom_pntr_.hpp.
References CAtom_pntr_Base::CanGetResidue_id(), CAtom_pntr_Base::m_Residue_id, and CSerialObject::ThrowUnassigned().
Referenced by ChemicalGraph::CheckForDisulfide(), and MakeBond().
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Get the Residue_sequence member data.
Definition at line 477 of file Molecule_graph_.hpp.
References CMolecule_graph_Base::m_Residue_sequence.
Referenced by Molecule::Molecule().
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Get the Residue_type member data.
Definition at line 486 of file Residue_graph_.hpp.
References CResidue_graph_Base::CanGetResidue_type(), CResidue_graph_Base::m_Residue_type, and CSerialObject::ThrowUnassigned().
Referenced by Residue::Residue().
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Get the Seq_id member data.
Definition at line 456 of file Molecule_graph_.hpp.
References CMolecule_graph_Base::CanGetSeq_id(), CMolecule_graph_Base::m_Seq_id, and CSerialObject::ThrowUnassigned().
Referenced by Molecule::Molecule().
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Get the Sid member data.
Definition at line 534 of file Molecule_graph_.hpp.
References CMolecule_graph_Base::CanGetSid(), CMolecule_graph_Base::m_Sid, and CSerialObject::ThrowUnassigned().
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Get the Sign member data.
Definition at line 523 of file Chiral_center_.hpp.
References CChiral_center_Base::CanGetSign(), CChiral_center_Base::m_Sign, and CSerialObject::ThrowUnassigned().
const CResidue_graph_pntr_Base::TStandard & CResidue_graph_pntr_Base::GetStandard | ( | void | ) | const |
Get the variant data.
Definition at line 137 of file Residue_graph_pntr_.cpp.
References CResidue_graph_pntr_Base::CheckSelected(), CResidue_graph_pntr_Base::e_Standard, and CResidue_graph_pntr_Base::m_object.
Referenced by Residue::Residue().
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Check if variant Assembly_type is selected.
Assembly_type type is defined as 'typedef int TAssembly_type'.
Definition at line 608 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::e_Assembly_type, and CBiomol_descr_Base::m_choice.
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Check if variant Attribution is selected.
Attribution type is defined as 'typedef CPub TAttribution'.
Definition at line 602 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::e_Attribution, and CBiomol_descr_Base::m_choice.
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Check if variant Biostruc is selected.
Biostruc type is defined as 'typedef CBiostruc_graph_pntr TBiostruc'.
Definition at line 317 of file Residue_graph_pntr_.hpp.
References CResidue_graph_pntr_Base::e_Biostruc, and CResidue_graph_pntr_Base::m_choice.
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Check if variant Local is selected.
Local type is defined as 'typedef CResidue_graph_id TLocal'.
Definition at line 297 of file Residue_graph_pntr_.hpp.
References CResidue_graph_pntr_Base::e_Local, and CResidue_graph_pntr_Base::m_choice.
Referenced by Residue::Residue().
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Check if variant Molecule_type is selected.
Molecule_type type is defined as 'typedef int TMolecule_type'.
Definition at line 635 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::e_Molecule_type, and CBiomol_descr_Base::m_choice.
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Check if variant Name is selected.
Name type is defined as 'typedef string TName'.
Definition at line 496 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::e_Name, and CBiomol_descr_Base::m_choice.
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Check if variant Organism is selected.
Organism type is defined as 'typedef CBioSource TOrganism'.
Definition at line 596 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::e_Organism, and CBiomol_descr_Base::m_choice.
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Check if variant Other_comment is selected.
Other_comment type is defined as 'typedef string TOther_comment'.
Definition at line 576 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::e_Other_comment, and CBiomol_descr_Base::m_choice.
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Check if variant Pdb_class is selected.
Pdb_class type is defined as 'typedef string TPdb_class'.
Definition at line 516 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::e_Pdb_class, and CBiomol_descr_Base::m_choice.
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Check if variant Pdb_comment is selected.
Pdb_comment type is defined as 'typedef string TPdb_comment'.
Definition at line 556 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::e_Pdb_comment, and CBiomol_descr_Base::m_choice.
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Check if variant Pdb_source is selected.
Pdb_source type is defined as 'typedef string TPdb_source'.
Definition at line 536 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::e_Pdb_source, and CBiomol_descr_Base::m_choice.
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Check if a value has been assigned to data member.
Data member is mandatory; its type is defined as 'typedef list< CRef< CAtom_pntr > > Tdata'
Definition at line 152 of file Atom_pntr_set_.hpp.
References CAtom_pntr_set_Base::m_set_State.
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Check if a value has been assigned to Atom_id data member.
Data member Atom_id is mandatory; its type is defined as 'typedef CAtom_id TAtom_id'
Definition at line 326 of file Atom_pntr_.hpp.
References CAtom_pntr_Base::m_set_State.
Referenced by CAtom_pntr_Base::CanGetAtom_id().
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Check if a value has been assigned to Atom_id_1 data member.
Data member Atom_id_1 is mandatory; its type is defined as 'typedef CAtom_pntr TAtom_id_1'
Definition at line 257 of file Inter_residue_bond_.hpp.
References CInter_residue_bond_Base::m_Atom_id_1.
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Check if a value has been assigned to Atom_id_1 data member.
Data member Atom_id_1 is mandatory; its type is defined as 'typedef CAtom_id TAtom_id_1'
Definition at line 261 of file Intra_residue_bond_.hpp.
References CIntra_residue_bond_Base::m_set_State.
Referenced by CIntra_residue_bond_Base::CanGetAtom_id_1().
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Check if a value has been assigned to Atom_id_2 data member.
Data member Atom_id_2 is mandatory; its type is defined as 'typedef CAtom_pntr TAtom_id_2'
Definition at line 287 of file Inter_residue_bond_.hpp.
References CInter_residue_bond_Base::m_Atom_id_2.
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Check if a value has been assigned to Atom_id_2 data member.
Data member Atom_id_2 is mandatory; its type is defined as 'typedef CAtom_id TAtom_id_2'
Definition at line 303 of file Intra_residue_bond_.hpp.
References CIntra_residue_bond_Base::m_set_State.
Referenced by CIntra_residue_bond_Base::CanGetAtom_id_2().
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Check if a value has been assigned to Atoms data member.
Data member Atoms is mandatory; its type is defined as 'typedef list< CRef< CAtom > > TAtoms'
Definition at line 539 of file Residue_graph_.hpp.
References CResidue_graph_Base::m_set_State.
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Check if a value has been assigned to Biostruc_id data member.
Data member Biostruc_id is mandatory; its type is defined as 'typedef CBiostruc_id TBiostruc_id'
Definition at line 202 of file Biostruc_graph_pntr_.hpp.
References CBiostruc_graph_pntr_Base::m_Biostruc_id.
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Check if a value has been assigned to Biostruc_residue_graph_set_id data member.
Data member Biostruc_residue_graph_set_id is mandatory; its type is defined as 'typedef CBiostruc_id TBiostruc_residue_graph_set_id'
Definition at line 202 of file Biost_resid_graph_set_pntr_.hpp.
References CBiostruc_residue_graph_set_pntr_Base::m_Biostruc_residue_graph_set_id.
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Check if a value has been assigned to Bond_order data member.
Data member Bond_order is optional; its type is defined as 'typedef int TBond_order'
Definition at line 317 of file Inter_residue_bond_.hpp.
References CInter_residue_bond_Base::m_set_State.
Referenced by CInter_residue_bond_Base::CanGetBond_order(), and CInter_residue_bond_Base::SetBond_order().
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Check if a value has been assigned to Bond_order data member.
Data member Bond_order is optional; its type is defined as 'typedef int TBond_order'
Definition at line 345 of file Intra_residue_bond_.hpp.
References CIntra_residue_bond_Base::m_set_State.
Referenced by CIntra_residue_bond_Base::CanGetBond_order(), and CIntra_residue_bond_Base::SetBond_order().
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Check if a value has been assigned to Bonds data member.
Data member Bonds is mandatory; its type is defined as 'typedef list< CRef< CIntra_residue_bond > > TBonds'
Definition at line 564 of file Residue_graph_.hpp.
References CResidue_graph_Base::m_set_State.
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Check if a value has been assigned to C data member.
Data member C is mandatory; its type is defined as 'typedef CAtom_id TC'
Definition at line 336 of file Chiral_center_.hpp.
References CChiral_center_Base::m_set_State.
Referenced by CChiral_center_Base::CanGetC().
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Check if a value has been assigned to Chiral_centers data member.
Data member Chiral_centers is optional; its type is defined as 'typedef list< CRef< CChiral_center > > TChiral_centers'
Definition at line 589 of file Residue_graph_.hpp.
References CResidue_graph_Base::m_set_State.
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Check if a value has been assigned to Descr data member.
Data member Descr is optional; its type is defined as 'typedef list< CRef< CBiomol_descr > > TDescr'
Definition at line 275 of file Biostruc_graph_.hpp.
References CBiostruc_graph_Base::m_set_State.
Referenced by ChemicalGraph::ChemicalGraph().
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Check if a value has been assigned to Descr data member.
Data member Descr is optional; its type is defined as 'typedef list< CRef< CBiomol_descr > > TDescr'
Definition at line 419 of file Molecule_graph_.hpp.
References CMolecule_graph_Base::m_set_State.
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Check if a value has been assigned to Descr data member.
Data member Descr is optional; its type is defined as 'typedef list< CRef< CBiomol_descr > > TDescr'
Definition at line 442 of file Residue_graph_.hpp.
References CResidue_graph_Base::m_set_State.
Referenced by Residue::Residue().
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Check if a value has been assigned to Element data member.
Data member Element is mandatory; its type is defined as 'typedef EElement TElement'
Definition at line 559 of file Atom_.hpp.
References CAtom_Base::m_set_State.
Referenced by CAtom_Base::CanGetElement(), and CAtom_Base::SetElement().
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Check if a value has been assigned to Id data member.
Data member Id is mandatory; its type is defined as 'typedef CAtom_id TId'
Definition at line 445 of file Atom_.hpp.
References CAtom_Base::m_set_State.
Referenced by CAtom_Base::CanGetId().
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Check if a value has been assigned to Id data member.
Data member Id is mandatory; its type is defined as 'typedef CMolecule_id TId'
Definition at line 377 of file Molecule_graph_.hpp.
References CMolecule_graph_Base::m_set_State.
Referenced by CMolecule_graph_Base::CanGetId().
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Check if a value has been assigned to Id data member.
Data member Id is mandatory; its type is defined as 'typedef CResidue_id TId'
Definition at line 246 of file Residue_.hpp.
References CResidue_Base::m_set_State.
Referenced by CResidue_Base::CanGetId().
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Check if a value has been assigned to Id data member.
Data member Id is mandatory; its type is defined as 'typedef CResidue_graph_id TId'
Definition at line 400 of file Residue_graph_.hpp.
References CResidue_graph_Base::m_set_State.
Referenced by CResidue_graph_Base::CanGetId().
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Check if a value has been assigned to Inter_molecule_bonds data member.
Data member Inter_molecule_bonds is optional; its type is defined as 'typedef list< CRef< CInter_residue_bond > > TInter_molecule_bonds'
Definition at line 325 of file Biostruc_graph_.hpp.
References CBiostruc_graph_Base::m_set_State.
Referenced by ChemicalGraph::ChemicalGraph().
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Check if a value has been assigned to Inter_residue_bonds data member.
Data member Inter_residue_bonds is optional; its type is defined as 'typedef list< CRef< CInter_residue_bond > > TInter_residue_bonds'
Definition at line 490 of file Molecule_graph_.hpp.
References CMolecule_graph_Base::m_set_State.
Referenced by Molecule::Molecule().
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Check if a value has been assigned to Ionizable_proton data member.
Data member Ionizable_proton is optional; its type is defined as 'typedef EIonizable_proton TIonizable_proton'
Definition at line 606 of file Atom_.hpp.
References CAtom_Base::m_set_State.
Referenced by CAtom_Base::CanGetIonizable_proton(), Residue::Residue(), and CAtom_Base::SetIonizable_proton().
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Check if a value has been assigned to Iupac_code data member.
Data member Iupac_code is optional; its type is defined as 'typedef list< string > TIupac_code'
Definition at line 534 of file Atom_.hpp.
References CAtom_Base::m_set_State.
Referenced by ClassifyAtom(), and Residue::Residue().
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Check if a value has been assigned to Iupac_code data member.
Data member Iupac_code is optional; its type is defined as 'typedef list< string > TIupac_code'
Definition at line 514 of file Residue_graph_.hpp.
References CResidue_graph_Base::m_set_State.
Referenced by Residue::Residue().
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Check if a value has been assigned to Molecule_graphs data member.
Data member Molecule_graphs is mandatory; its type is defined as 'typedef list< CRef< CMolecule_graph > > TMolecule_graphs'
Definition at line 300 of file Biostruc_graph_.hpp.
References CBiostruc_graph_Base::m_set_State.
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Check if a value has been assigned to Molecule_id data member.
Data member Molecule_id is mandatory; its type is defined as 'typedef CMolecule_id TMolecule_id'
Definition at line 242 of file Atom_pntr_.hpp.
References CAtom_pntr_Base::m_set_State.
Referenced by CAtom_pntr_Base::CanGetMolecule_id().
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Check if a value has been assigned to N1 data member.
Data member N1 is mandatory; its type is defined as 'typedef CAtom_id TN1'
Definition at line 378 of file Chiral_center_.hpp.
References CChiral_center_Base::m_set_State.
Referenced by CChiral_center_Base::CanGetN1().
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Check if a value has been assigned to N2 data member.
Data member N2 is mandatory; its type is defined as 'typedef CAtom_id TN2'
Definition at line 420 of file Chiral_center_.hpp.
References CChiral_center_Base::m_set_State.
Referenced by CChiral_center_Base::CanGetN2().
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Check if a value has been assigned to N3 data member.
Data member N3 is mandatory; its type is defined as 'typedef CAtom_id TN3'
Definition at line 462 of file Chiral_center_.hpp.
References CChiral_center_Base::m_set_State.
Referenced by CChiral_center_Base::CanGetN3().
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Check if a value has been assigned to Name data member.
Data member Name is optional; its type is defined as 'typedef string TName'
Definition at line 487 of file Atom_.hpp.
References CAtom_Base::m_set_State.
Referenced by CAtom_Base::CanGetName(), Residue::Residue(), and CAtom_Base::SetName().
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Check if a value has been assigned to Name data member.
Data member Name is optional; its type is defined as 'typedef string TName'
Definition at line 288 of file Residue_.hpp.
References CResidue_Base::m_set_State.
Referenced by CResidue_Base::CanGetName(), Residue::Residue(), and CResidue_Base::SetName().
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Check if a value has been assigned to Residue_graph data member.
Data member Residue_graph is mandatory; its type is defined as 'typedef CResidue_graph_pntr TResidue_graph'
Definition at line 335 of file Residue_.hpp.
References CResidue_Base::m_Residue_graph.
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Check if a value has been assigned to Residue_graph_id data member.
Data member Residue_graph_id is mandatory; its type is defined as 'typedef CResidue_graph_id TResidue_graph_id'
Definition at line 232 of file Biost_resid_graph_set_pntr_.hpp.
References CBiostruc_residue_graph_set_pntr_Base::m_set_State.
Referenced by CBiostruc_residue_graph_set_pntr_Base::CanGetResidue_graph_id().
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Check if a value has been assigned to Residue_graph_id data member.
Data member Residue_graph_id is mandatory; its type is defined as 'typedef CResidue_graph_id TResidue_graph_id'
Definition at line 232 of file Biostruc_graph_pntr_.hpp.
References CBiostruc_graph_pntr_Base::m_set_State.
Referenced by CBiostruc_graph_pntr_Base::CanGetResidue_graph_id().
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Check if a value has been assigned to Residue_graphs data member.
Data member Residue_graphs is optional; its type is defined as 'typedef list< CRef< CResidue_graph > > TResidue_graphs'
Definition at line 350 of file Biostruc_graph_.hpp.
References CBiostruc_graph_Base::m_set_State.
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Check if a value has been assigned to Residue_id data member.
Data member Residue_id is mandatory; its type is defined as 'typedef CResidue_id TResidue_id'
Definition at line 284 of file Atom_pntr_.hpp.
References CAtom_pntr_Base::m_set_State.
Referenced by CAtom_pntr_Base::CanGetResidue_id().
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Check if a value has been assigned to Residue_sequence data member.
Data member Residue_sequence is mandatory; its type is defined as 'typedef list< CRef< CResidue > > TResidue_sequence'
Definition at line 465 of file Molecule_graph_.hpp.
References CMolecule_graph_Base::m_set_State.
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Check if a value has been assigned to Residue_type data member.
Data member Residue_type is optional; its type is defined as 'typedef int TResidue_type'
Definition at line 467 of file Residue_graph_.hpp.
References CResidue_graph_Base::m_set_State.
Referenced by CResidue_graph_Base::CanGetResidue_type(), Residue::Residue(), and CResidue_graph_Base::SetResidue_type().
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Check if a value has been assigned to Seq_id data member.
Data member Seq_id is optional; its type is defined as 'typedef CSeq_id TSeq_id'
Definition at line 444 of file Molecule_graph_.hpp.
References CMolecule_graph_Base::m_Seq_id.
Referenced by CMolecule_graph_Base::CanGetSeq_id(), and Molecule::Molecule().
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Check if a value has been assigned to Sid data member.
Data member Sid is optional; its type is defined as 'typedef CPCSubstance_id TSid'
Definition at line 515 of file Molecule_graph_.hpp.
References CMolecule_graph_Base::m_set_State.
Referenced by CMolecule_graph_Base::CanGetSid().
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Check if a value has been assigned to Sign data member.
Data member Sign is mandatory; its type is defined as 'typedef ESign TSign'
Definition at line 504 of file Chiral_center_.hpp.
References CChiral_center_Base::m_set_State.
Referenced by CChiral_center_Base::CanGetSign(), and CChiral_center_Base::SetSign().
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Check if variant Standard is selected.
Standard type is defined as 'typedef CBiostruc_residue_graph_set_pntr TStandard'.
Definition at line 323 of file Residue_graph_pntr_.hpp.
References CResidue_graph_pntr_Base::e_Standard, and CResidue_graph_pntr_Base::m_choice.
Referenced by Residue::Residue().
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Conversion operator to 'const Tdata' type.
Definition at line 177 of file Atom_pntr_set_.hpp.
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Conversion operator to 'Tdata' type.
Definition at line 183 of file Atom_pntr_set_.hpp.
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Definition at line 102 of file Atom_id_.hpp.
References str(), and WriteObject().
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Definition at line 102 of file Molecule_id_.hpp.
References str(), and WriteObject().
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Definition at line 103 of file PCSubstance_id_.hpp.
References str(), and WriteObject().
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Definition at line 102 of file Residue_graph_id_.hpp.
References str(), and WriteObject().
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Definition at line 102 of file Residue_id_.hpp.
References str(), and WriteObject().
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Definition at line 113 of file Atom_id_.hpp.
References ReadObject(), and str().
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Definition at line 113 of file Molecule_id_.hpp.
References ReadObject(), and str().
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Definition at line 114 of file PCSubstance_id_.hpp.
References ReadObject(), and str().
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Definition at line 113 of file Residue_graph_id_.hpp.
References ReadObject(), and str().
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Definition at line 113 of file Residue_id_.hpp.
References ReadObject(), and str().
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Reset the whole object.
Definition at line 184 of file Atom_.cpp.
References CAtom_Base::ResetElement(), CAtom_Base::ResetId(), CAtom_Base::ResetIonizable_proton(), CAtom_Base::ResetIupac_code(), and CAtom_Base::ResetName().
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Reset the whole object.
Definition at line 50 of file Atom_pntr_.cpp.
References CAtom_pntr_Base::ResetAtom_id(), CAtom_pntr_Base::ResetMolecule_id(), and CAtom_pntr_Base::ResetResidue_id().
void CAtom_pntr_set_Base::Reset | ( | void | ) |
Reset data member.
Definition at line 51 of file Atom_pntr_set_.cpp.
References CAtom_pntr_set_Base::m_data, and CAtom_pntr_set_Base::m_set_State.
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Reset the whole object.
Definition at line 76 of file Biomol_descr_.cpp.
References CBiomol_descr_Base::e_not_set, CBiomol_descr_Base::m_choice, and CBiomol_descr_Base::ResetSelection().
Referenced by CBiomol_descr_Base::~CBiomol_descr_Base().
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Reset the whole object.
Definition at line 65 of file Biost_resid_graph_set_pntr_.cpp.
References CBiostruc_residue_graph_set_pntr_Base::ResetBiostruc_residue_graph_set_id(), and CBiostruc_residue_graph_set_pntr_Base::ResetResidue_graph_id().
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Reset the whole object.
Definition at line 78 of file Biostruc_graph_.cpp.
References CBiostruc_graph_Base::ResetDescr(), CBiostruc_graph_Base::ResetInter_molecule_bonds(), CBiostruc_graph_Base::ResetMolecule_graphs(), and CBiostruc_graph_Base::ResetResidue_graphs().
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Reset the whole object.
Definition at line 65 of file Biostruc_graph_pntr_.cpp.
References CBiostruc_graph_pntr_Base::ResetBiostruc_id(), and CBiostruc_graph_pntr_Base::ResetResidue_graph_id().
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Reset the whole object.
Definition at line 59 of file Chiral_center_.cpp.
References CChiral_center_Base::ResetC(), CChiral_center_Base::ResetN1(), CChiral_center_Base::ResetN2(), CChiral_center_Base::ResetN3(), and CChiral_center_Base::ResetSign().
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Reset the whole object.
Definition at line 93 of file Inter_residue_bond_.cpp.
References CInter_residue_bond_Base::ResetAtom_id_1(), CInter_residue_bond_Base::ResetAtom_id_2(), and CInter_residue_bond_Base::ResetBond_order().
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Reset the whole object.
Definition at line 64 of file Intra_residue_bond_.cpp.
References CIntra_residue_bond_Base::ResetAtom_id_1(), CIntra_residue_bond_Base::ResetAtom_id_2(), and CIntra_residue_bond_Base::ResetBond_order().
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Reset the whole object.
Definition at line 89 of file Molecule_graph_.cpp.
References CMolecule_graph_Base::ResetDescr(), CMolecule_graph_Base::ResetId(), CMolecule_graph_Base::ResetInter_residue_bonds(), CMolecule_graph_Base::ResetResidue_sequence(), CMolecule_graph_Base::ResetSeq_id(), and CMolecule_graph_Base::ResetSid().
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Reset the whole object.
Definition at line 71 of file Residue_.cpp.
References CResidue_Base::ResetId(), CResidue_Base::ResetName(), and CResidue_Base::ResetResidue_graph().
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Reset the whole object.
Definition at line 95 of file Residue_graph_.cpp.
References CResidue_graph_Base::ResetAtoms(), CResidue_graph_Base::ResetBonds(), CResidue_graph_Base::ResetChiral_centers(), CResidue_graph_Base::ResetDescr(), CResidue_graph_Base::ResetId(), CResidue_graph_Base::ResetIupac_code(), and CResidue_graph_Base::ResetResidue_type().
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Reset the whole object.
Definition at line 52 of file Residue_graph_pntr_.cpp.
References CResidue_graph_pntr_Base::e_not_set, CResidue_graph_pntr_Base::m_choice, and CResidue_graph_pntr_Base::ResetSelection().
Referenced by CResidue_graph_pntr_Base::~CResidue_graph_pntr_Base().
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Reset Atom_id data member.
Definition at line 338 of file Atom_pntr_.hpp.
References CAtom_pntr_Base::m_Atom_id, and CAtom_pntr_Base::m_set_State.
Referenced by CAtom_pntr_Base::Reset().
END_ENUM_INFO void CInter_residue_bond_Base::ResetAtom_id_1 | ( | void | ) |
Reset Atom_id_1 data member.
Definition at line 65 of file Inter_residue_bond_.cpp.
References CInter_residue_bond_Base::m_Atom_id_1.
Referenced by CInter_residue_bond_Base::CInter_residue_bond_Base(), CInter_residue_bond_Base::GetAtom_id_1(), CInter_residue_bond_Base::Reset(), and CInter_residue_bond_Base::SetAtom_id_1().
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Reset Atom_id_1 data member.
Definition at line 273 of file Intra_residue_bond_.hpp.
References CIntra_residue_bond_Base::m_Atom_id_1, and CIntra_residue_bond_Base::m_set_State.
Referenced by CIntra_residue_bond_Base::Reset().
void CInter_residue_bond_Base::ResetAtom_id_2 | ( | void | ) |
Reset Atom_id_2 data member.
Definition at line 79 of file Inter_residue_bond_.cpp.
References CInter_residue_bond_Base::m_Atom_id_2.
Referenced by CInter_residue_bond_Base::CInter_residue_bond_Base(), CInter_residue_bond_Base::GetAtom_id_2(), CInter_residue_bond_Base::Reset(), and CInter_residue_bond_Base::SetAtom_id_2().
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Reset Atom_id_2 data member.
Definition at line 315 of file Intra_residue_bond_.hpp.
References CIntra_residue_bond_Base::m_Atom_id_2, and CIntra_residue_bond_Base::m_set_State.
Referenced by CIntra_residue_bond_Base::Reset().
void CResidue_graph_Base::ResetAtoms | ( | void | ) |
Reset Atoms data member.
Definition at line 77 of file Residue_graph_.cpp.
References CResidue_graph_Base::m_Atoms, and CResidue_graph_Base::m_set_State.
Referenced by CResidue_graph_Base::Reset().
void CBiostruc_graph_pntr_Base::ResetBiostruc_id | ( | void | ) |
Reset Biostruc_id data member.
Definition at line 51 of file Biostruc_graph_pntr_.cpp.
References CBiostruc_graph_pntr_Base::m_Biostruc_id.
Referenced by CBiostruc_graph_pntr_Base::CBiostruc_graph_pntr_Base(), CBiostruc_graph_pntr_Base::GetBiostruc_id(), CBiostruc_graph_pntr_Base::Reset(), and CBiostruc_graph_pntr_Base::SetBiostruc_id().
void CBiostruc_residue_graph_set_pntr_Base::ResetBiostruc_residue_graph_set_id | ( | void | ) |
Reset Biostruc_residue_graph_set_id data member.
Definition at line 51 of file Biost_resid_graph_set_pntr_.cpp.
References CBiostruc_residue_graph_set_pntr_Base::m_Biostruc_residue_graph_set_id.
Referenced by CBiostruc_residue_graph_set_pntr_Base::CBiostruc_residue_graph_set_pntr_Base(), CBiostruc_residue_graph_set_pntr_Base::GetBiostruc_residue_graph_set_id(), CBiostruc_residue_graph_set_pntr_Base::Reset(), and CBiostruc_residue_graph_set_pntr_Base::SetBiostruc_residue_graph_set_id().
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Reset Bond_order data member.
Definition at line 329 of file Inter_residue_bond_.hpp.
References CInter_residue_bond_Base::m_Bond_order, and CInter_residue_bond_Base::m_set_State.
Referenced by CInter_residue_bond_Base::Reset().
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Reset Bond_order data member.
Definition at line 357 of file Intra_residue_bond_.hpp.
References CIntra_residue_bond_Base::m_Bond_order, and CIntra_residue_bond_Base::m_set_State.
Referenced by CIntra_residue_bond_Base::Reset().
void CResidue_graph_Base::ResetBonds | ( | void | ) |
Reset Bonds data member.
Definition at line 83 of file Residue_graph_.cpp.
References CResidue_graph_Base::m_Bonds, and CResidue_graph_Base::m_set_State.
Referenced by CResidue_graph_Base::Reset().
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Reset C data member.
Definition at line 348 of file Chiral_center_.hpp.
References CChiral_center_Base::m_C, and CChiral_center_Base::m_set_State.
Referenced by CChiral_center_Base::Reset().
void CResidue_graph_Base::ResetChiral_centers | ( | void | ) |
Reset Chiral_centers data member.
Definition at line 89 of file Residue_graph_.cpp.
References CResidue_graph_Base::m_Chiral_centers, and CResidue_graph_Base::m_set_State.
Referenced by CResidue_graph_Base::Reset().
void CBiostruc_graph_Base::ResetDescr | ( | void | ) |
Reset Descr data member.
Definition at line 54 of file Biostruc_graph_.cpp.
References CBiostruc_graph_Base::m_Descr, and CBiostruc_graph_Base::m_set_State.
Referenced by CBiostruc_graph_Base::Reset().
void CMolecule_graph_Base::ResetDescr | ( | void | ) |
Reset Descr data member.
Definition at line 54 of file Molecule_graph_.cpp.
References CMolecule_graph_Base::m_Descr, and CMolecule_graph_Base::m_set_State.
Referenced by CMolecule_graph_Base::Reset().
END_ENUM_INFO void CResidue_graph_Base::ResetDescr | ( | void | ) |
Reset Descr data member.
Definition at line 65 of file Residue_graph_.cpp.
References CResidue_graph_Base::m_Descr, and CResidue_graph_Base::m_set_State.
Referenced by CResidue_graph_Base::Reset().
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Reset Element data member.
Definition at line 571 of file Atom_.hpp.
References CAtom_Base::m_Element, and CAtom_Base::m_set_State.
Referenced by CAtom_Base::Reset().
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Reset Id data member.
Definition at line 457 of file Atom_.hpp.
References CAtom_Base::m_Id, and CAtom_Base::m_set_State.
Referenced by CAtom_Base::Reset().
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Reset Id data member.
Definition at line 389 of file Molecule_graph_.hpp.
References CMolecule_graph_Base::m_Id, and CMolecule_graph_Base::m_set_State.
Referenced by CMolecule_graph_Base::Reset().
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Reset Id data member.
Definition at line 258 of file Residue_.hpp.
References CResidue_Base::m_Id, and CResidue_Base::m_set_State.
Referenced by CResidue_Base::Reset().
|
inline |
Reset Id data member.
Definition at line 412 of file Residue_graph_.hpp.
References CResidue_graph_Base::m_Id, and CResidue_graph_Base::m_set_State.
Referenced by CResidue_graph_Base::Reset().
void CBiostruc_graph_Base::ResetInter_molecule_bonds | ( | void | ) |
Reset Inter_molecule_bonds data member.
Definition at line 66 of file Biostruc_graph_.cpp.
References CBiostruc_graph_Base::m_Inter_molecule_bonds, and CBiostruc_graph_Base::m_set_State.
Referenced by CBiostruc_graph_Base::Reset().
void CMolecule_graph_Base::ResetInter_residue_bonds | ( | void | ) |
Reset Inter_residue_bonds data member.
Definition at line 83 of file Molecule_graph_.cpp.
References CMolecule_graph_Base::m_Inter_residue_bonds, and CMolecule_graph_Base::m_set_State.
Referenced by CMolecule_graph_Base::Reset().
|
inline |
Reset Ionizable_proton data member.
Definition at line 618 of file Atom_.hpp.
References CAtom_Base::m_Ionizable_proton, and CAtom_Base::m_set_State.
Referenced by CAtom_Base::Reset().
void CAtom_Base::ResetIupac_code | ( | void | ) |
Reset Iupac_code data member.
Definition at line 178 of file Atom_.cpp.
References CAtom_Base::m_Iupac_code, and CAtom_Base::m_set_State.
Referenced by CAtom_Base::Reset().
void CResidue_graph_Base::ResetIupac_code | ( | void | ) |
Reset Iupac_code data member.
Definition at line 71 of file Residue_graph_.cpp.
References CResidue_graph_Base::m_Iupac_code, and CResidue_graph_Base::m_set_State.
Referenced by CResidue_graph_Base::Reset().
void CBiostruc_graph_Base::ResetMolecule_graphs | ( | void | ) |
Reset Molecule_graphs data member.
Definition at line 60 of file Biostruc_graph_.cpp.
References CBiostruc_graph_Base::m_Molecule_graphs, and CBiostruc_graph_Base::m_set_State.
Referenced by CBiostruc_graph_Base::Reset().
|
inline |
Reset Molecule_id data member.
Definition at line 254 of file Atom_pntr_.hpp.
References CAtom_pntr_Base::m_Molecule_id, and CAtom_pntr_Base::m_set_State.
Referenced by CAtom_pntr_Base::Reset().
|
inline |
Reset N1 data member.
Definition at line 390 of file Chiral_center_.hpp.
References CChiral_center_Base::m_N1, and CChiral_center_Base::m_set_State.
Referenced by CChiral_center_Base::Reset().
|
inline |
Reset N2 data member.
Definition at line 432 of file Chiral_center_.hpp.
References CChiral_center_Base::m_N2, and CChiral_center_Base::m_set_State.
Referenced by CChiral_center_Base::Reset().
|
inline |
Reset N3 data member.
Definition at line 474 of file Chiral_center_.hpp.
References CChiral_center_Base::m_N3, and CChiral_center_Base::m_set_State.
Referenced by CChiral_center_Base::Reset().
END_ENUM_INFO void CAtom_Base::ResetName | ( | void | ) |
Reset Name data member.
Definition at line 172 of file Atom_.cpp.
References CAtom_Base::m_Name, and CAtom_Base::m_set_State.
Referenced by CAtom_Base::Reset().
void CResidue_Base::ResetName | ( | void | ) |
Reset Name data member.
Definition at line 51 of file Residue_.cpp.
References CResidue_Base::m_Name, and CResidue_Base::m_set_State.
Referenced by CResidue_Base::Reset().
void CResidue_Base::ResetResidue_graph | ( | void | ) |
Reset Residue_graph data member.
Definition at line 57 of file Residue_.cpp.
References CResidue_Base::m_Residue_graph.
Referenced by CResidue_Base::CResidue_Base(), CResidue_Base::GetResidue_graph(), CResidue_Base::Reset(), and CResidue_Base::SetResidue_graph().
|
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Reset Residue_graph_id data member.
Definition at line 244 of file Biost_resid_graph_set_pntr_.hpp.
References CBiostruc_residue_graph_set_pntr_Base::m_Residue_graph_id, and CBiostruc_residue_graph_set_pntr_Base::m_set_State.
Referenced by CBiostruc_residue_graph_set_pntr_Base::Reset().
|
inline |
Reset Residue_graph_id data member.
Definition at line 244 of file Biostruc_graph_pntr_.hpp.
References CBiostruc_graph_pntr_Base::m_Residue_graph_id, and CBiostruc_graph_pntr_Base::m_set_State.
Referenced by CBiostruc_graph_pntr_Base::Reset().
void CBiostruc_graph_Base::ResetResidue_graphs | ( | void | ) |
Reset Residue_graphs data member.
Definition at line 72 of file Biostruc_graph_.cpp.
References CBiostruc_graph_Base::m_Residue_graphs, and CBiostruc_graph_Base::m_set_State.
Referenced by CBiostruc_graph_Base::Reset().
|
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Reset Residue_id data member.
Definition at line 296 of file Atom_pntr_.hpp.
References CAtom_pntr_Base::m_Residue_id, and CAtom_pntr_Base::m_set_State.
Referenced by CAtom_pntr_Base::Reset().
void CMolecule_graph_Base::ResetResidue_sequence | ( | void | ) |
Reset Residue_sequence data member.
Definition at line 77 of file Molecule_graph_.cpp.
References CMolecule_graph_Base::m_Residue_sequence, and CMolecule_graph_Base::m_set_State.
Referenced by CMolecule_graph_Base::Reset().
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Reset Residue_type data member.
Definition at line 479 of file Residue_graph_.hpp.
References CResidue_graph_Base::m_Residue_type, and CResidue_graph_Base::m_set_State.
Referenced by CResidue_graph_Base::Reset().
|
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Reset the selection (set it to e_not_set).
Definition at line 82 of file Biomol_descr_.cpp.
References CBiomol_descr_Base::e_Attribution, CBiomol_descr_Base::e_Name, CBiomol_descr_Base::e_not_set, CBiomol_descr_Base::e_Organism, CBiomol_descr_Base::e_Other_comment, CBiomol_descr_Base::e_Pdb_class, CBiomol_descr_Base::e_Pdb_comment, CBiomol_descr_Base::e_Pdb_source, CBiomol_descr_Base::m_choice, CBiomol_descr_Base::m_object, and CBiomol_descr_Base::m_string.
Referenced by CBiomol_descr_Base::Reset(), CBiomol_descr_Base::SetAttribution(), and CBiomol_descr_Base::SetOrganism().
|
virtual |
Reset the selection (set it to e_not_set).
Definition at line 58 of file Residue_graph_pntr_.cpp.
References CResidue_graph_pntr_Base::e_Biostruc, CResidue_graph_pntr_Base::e_Local, CResidue_graph_pntr_Base::e_not_set, CResidue_graph_pntr_Base::e_Standard, CResidue_graph_pntr_Base::m_choice, CResidue_graph_pntr_Base::m_Local, and CResidue_graph_pntr_Base::m_object.
Referenced by CResidue_graph_pntr_Base::Reset(), CResidue_graph_pntr_Base::SetBiostruc(), and CResidue_graph_pntr_Base::SetStandard().
void CMolecule_graph_Base::ResetSeq_id | ( | void | ) |
Reset Seq_id data member.
Definition at line 60 of file Molecule_graph_.cpp.
References CMolecule_graph_Base::m_Seq_id.
Referenced by CMolecule_graph_Base::Reset().
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Reset Sid data member.
Definition at line 527 of file Molecule_graph_.hpp.
References CMolecule_graph_Base::m_set_State, and CMolecule_graph_Base::m_Sid.
Referenced by CMolecule_graph_Base::Reset().
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Reset Sign data member.
Definition at line 516 of file Chiral_center_.hpp.
References CChiral_center_Base::m_set_State, and CChiral_center_Base::m_Sign.
Referenced by CChiral_center_Base::Reset().
void CBiomol_descr_Base::Select | ( | E_Choice | index, |
EResetVariant | reset, | ||
CObjectMemoryPool * | pool | ||
) |
Select the requested variant if needed, allocating CObject variants from memory pool.
void CResidue_graph_pntr_Base::Select | ( | E_Choice | index, |
EResetVariant | reset, | ||
CObjectMemoryPool * | pool | ||
) |
Select the requested variant if needed, allocating CObject variants from memory pool.
void CBiomol_descr_Base::Select | ( | E_Choice | index, |
EResetVariant | reset = eDoResetVariant |
||
) |
Select the requested variant if needed.
index | New selection state. |
reset | Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant. |
Referenced by CBiomol_descr_Base::SetAssembly_type(), CBiomol_descr_Base::SetAttribution(), CBiomol_descr_Base::SetMolecule_type(), CBiomol_descr_Base::SetName(), CBiomol_descr_Base::SetOrganism(), CBiomol_descr_Base::SetOther_comment(), CBiomol_descr_Base::SetPdb_class(), CBiomol_descr_Base::SetPdb_comment(), and CBiomol_descr_Base::SetPdb_source().
void CResidue_graph_pntr_Base::Select | ( | E_Choice | index, |
EResetVariant | reset = eDoResetVariant |
||
) |
Select the requested variant if needed.
index | New selection state. |
reset | Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant. |
Referenced by CResidue_graph_pntr_Base::SetBiostruc(), CResidue_graph_pntr_Base::SetLocal(), and CResidue_graph_pntr_Base::SetStandard().
|
static |
Retrieve selection name (for diagnostic purposes).
index | One of possible selection states. |
Definition at line 143 of file Biomol_descr_.cpp.
References CBiomol_descr_Base::sm_SelectionNames.
|
static |
Retrieve selection name (for diagnostic purposes).
index | One of possible selection states. |
Definition at line 99 of file Residue_graph_pntr_.cpp.
References CResidue_graph_pntr_Base::sm_SelectionNames.
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inline |
Assign a value to data member.
Definition at line 170 of file Atom_pntr_set_.hpp.
References CAtom_pntr_set_Base::m_data, and CAtom_pntr_set_Base::m_set_State.
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inline |
Select the variant and set its data.
value | Variant data. |
Definition at line 628 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::e_Assembly_type, eDoNotResetVariant, CBiomol_descr_Base::m_Assembly_type, CBiomol_descr_Base::Select(), and value.
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inline |
Select the variant.
Definition at line 621 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::e_Assembly_type, eDoNotResetVariant, CBiomol_descr_Base::m_Assembly_type, and CBiomol_descr_Base::Select().
Assign a value to Atom_id data member.
value | Value to assign |
Definition at line 354 of file Atom_pntr_.hpp.
References CAtom_pntr_Base::m_Atom_id, CAtom_pntr_Base::m_set_State, and value.
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inline |
Assign a value to Atom_id data member.
Definition at line 361 of file Atom_pntr_.hpp.
References CAtom_pntr_Base::m_Atom_id, and CAtom_pntr_Base::m_set_State.
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inline |
Assign a value to Atom_id_1 data member.
value | Value to assign |
Definition at line 289 of file Intra_residue_bond_.hpp.
References CIntra_residue_bond_Base::m_Atom_id_1, CIntra_residue_bond_Base::m_set_State, and value.
void CInter_residue_bond_Base::SetAtom_id_1 | ( | CInter_residue_bond_Base::TAtom_id_1 & | value | ) |
Assign a value to Atom_id_1 data member.
value | Reference to value. |
Definition at line 74 of file Inter_residue_bond_.cpp.
References CInter_residue_bond_Base::m_Atom_id_1, and value.
|
inline |
Assign a value to Atom_id_1 data member.
Definition at line 278 of file Inter_residue_bond_.hpp.
References CInter_residue_bond_Base::m_Atom_id_1, and CInter_residue_bond_Base::ResetAtom_id_1().
|
inline |
Assign a value to Atom_id_1 data member.
Definition at line 296 of file Intra_residue_bond_.hpp.
References CIntra_residue_bond_Base::m_Atom_id_1, and CIntra_residue_bond_Base::m_set_State.
|
inline |
Assign a value to Atom_id_2 data member.
value | Value to assign |
Definition at line 331 of file Intra_residue_bond_.hpp.
References CIntra_residue_bond_Base::m_Atom_id_2, CIntra_residue_bond_Base::m_set_State, and value.
void CInter_residue_bond_Base::SetAtom_id_2 | ( | CInter_residue_bond_Base::TAtom_id_2 & | value | ) |
Assign a value to Atom_id_2 data member.
value | Reference to value. |
Definition at line 88 of file Inter_residue_bond_.cpp.
References CInter_residue_bond_Base::m_Atom_id_2, and value.
|
inline |
Assign a value to Atom_id_2 data member.
Definition at line 308 of file Inter_residue_bond_.hpp.
References CInter_residue_bond_Base::m_Atom_id_2, and CInter_residue_bond_Base::ResetAtom_id_2().
|
inline |
Assign a value to Atom_id_2 data member.
Definition at line 338 of file Intra_residue_bond_.hpp.
References CIntra_residue_bond_Base::m_Atom_id_2, and CIntra_residue_bond_Base::m_set_State.
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inline |
Assign a value to Atoms data member.
Definition at line 557 of file Residue_graph_.hpp.
References CResidue_graph_Base::m_Atoms, and CResidue_graph_Base::m_set_State.
void CBiomol_descr_Base::SetAttribution | ( | CBiomol_descr_Base::TAttribution & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 217 of file Biomol_descr_.cpp.
References CObject::AddReference(), CBiomol_descr_Base::e_Attribution, CBiomol_descr_Base::m_choice, CBiomol_descr_Base::m_object, CBiomol_descr_Base::ResetSelection(), and value.
CBiomol_descr_Base::TAttribution & CBiomol_descr_Base::SetAttribution | ( | void | ) |
Select the variant.
Definition at line 211 of file Biomol_descr_.cpp.
References CBiomol_descr_Base::e_Attribution, eDoNotResetVariant, CBiomol_descr_Base::m_object, and CBiomol_descr_Base::Select().
void CResidue_graph_pntr_Base::SetBiostruc | ( | CResidue_graph_pntr_Base::TBiostruc & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 127 of file Residue_graph_pntr_.cpp.
References CObject::AddReference(), CResidue_graph_pntr_Base::e_Biostruc, CResidue_graph_pntr_Base::m_choice, CResidue_graph_pntr_Base::m_object, CResidue_graph_pntr_Base::ResetSelection(), and value.
CResidue_graph_pntr_Base::TBiostruc & CResidue_graph_pntr_Base::SetBiostruc | ( | void | ) |
Select the variant.
Definition at line 121 of file Residue_graph_pntr_.cpp.
References CResidue_graph_pntr_Base::e_Biostruc, eDoNotResetVariant, CResidue_graph_pntr_Base::m_object, and CResidue_graph_pntr_Base::Select().
void CBiostruc_graph_pntr_Base::SetBiostruc_id | ( | CBiostruc_graph_pntr_Base::TBiostruc_id & | value | ) |
Assign a value to Biostruc_id data member.
value | Reference to value. |
Definition at line 60 of file Biostruc_graph_pntr_.cpp.
References CBiostruc_graph_pntr_Base::m_Biostruc_id, and value.
|
inline |
Assign a value to Biostruc_id data member.
Definition at line 223 of file Biostruc_graph_pntr_.hpp.
References CBiostruc_graph_pntr_Base::m_Biostruc_id, and CBiostruc_graph_pntr_Base::ResetBiostruc_id().
void CBiostruc_residue_graph_set_pntr_Base::SetBiostruc_residue_graph_set_id | ( | CBiostruc_residue_graph_set_pntr_Base::TBiostruc_residue_graph_set_id & | value | ) |
Assign a value to Biostruc_residue_graph_set_id data member.
value | Reference to value. |
Definition at line 60 of file Biost_resid_graph_set_pntr_.cpp.
References CBiostruc_residue_graph_set_pntr_Base::m_Biostruc_residue_graph_set_id, and value.
|
inline |
Assign a value to Biostruc_residue_graph_set_id data member.
Definition at line 223 of file Biost_resid_graph_set_pntr_.hpp.
References CBiostruc_residue_graph_set_pntr_Base::m_Biostruc_residue_graph_set_id, and CBiostruc_residue_graph_set_pntr_Base::ResetBiostruc_residue_graph_set_id().
|
inline |
Assign a value to Bond_order data member.
value | Value to assign |
Definition at line 345 of file Inter_residue_bond_.hpp.
References CInter_residue_bond_Base::m_Bond_order, CInter_residue_bond_Base::m_set_State, and value.
|
inline |
Assign a value to Bond_order data member.
value | Value to assign |
Definition at line 373 of file Intra_residue_bond_.hpp.
References CIntra_residue_bond_Base::m_Bond_order, CIntra_residue_bond_Base::m_set_State, and value.
|
inline |
Assign a value to Bond_order data member.
Definition at line 352 of file Inter_residue_bond_.hpp.
References CInter_residue_bond_Base::IsSetBond_order(), CInter_residue_bond_Base::m_Bond_order, CInter_residue_bond_Base::m_set_State, and CSerialObject::UnassignedByte().
|
inline |
Assign a value to Bond_order data member.
Definition at line 380 of file Intra_residue_bond_.hpp.
References CIntra_residue_bond_Base::IsSetBond_order(), CIntra_residue_bond_Base::m_Bond_order, CIntra_residue_bond_Base::m_set_State, and CSerialObject::UnassignedByte().
|
inline |
Assign a value to Bonds data member.
Definition at line 582 of file Residue_graph_.hpp.
References CResidue_graph_Base::m_Bonds, and CResidue_graph_Base::m_set_State.
Assign a value to C data member.
value | Value to assign |
Definition at line 364 of file Chiral_center_.hpp.
References CChiral_center_Base::m_C, CChiral_center_Base::m_set_State, and value.
|
inline |
Assign a value to C data member.
Definition at line 371 of file Chiral_center_.hpp.
References CChiral_center_Base::m_C, and CChiral_center_Base::m_set_State.
|
inline |
Assign a value to Chiral_centers data member.
Definition at line 607 of file Residue_graph_.hpp.
References CResidue_graph_Base::m_Chiral_centers, and CResidue_graph_Base::m_set_State.
|
inline |
Assign a value to Descr data member.
Definition at line 293 of file Biostruc_graph_.hpp.
References CBiostruc_graph_Base::m_Descr, and CBiostruc_graph_Base::m_set_State.
|
inline |
Assign a value to Descr data member.
Definition at line 437 of file Molecule_graph_.hpp.
References CMolecule_graph_Base::m_Descr, and CMolecule_graph_Base::m_set_State.
|
inline |
Assign a value to Descr data member.
Definition at line 460 of file Residue_graph_.hpp.
References CResidue_graph_Base::m_Descr, and CResidue_graph_Base::m_set_State.
|
inline |
Assign a value to Element data member.
value | Value to assign |
Definition at line 587 of file Atom_.hpp.
References CAtom_Base::m_Element, CAtom_Base::m_set_State, and value.
|
inline |
Assign a value to Element data member.
Definition at line 594 of file Atom_.hpp.
References CAtom_Base::IsSetElement(), CAtom_Base::m_Element, CAtom_Base::m_set_State, and CSerialObject::UnassignedByte().
Assign a value to Id data member.
value | Value to assign |
Definition at line 473 of file Atom_.hpp.
References CAtom_Base::m_Id, CAtom_Base::m_set_State, and value.
Assign a value to Id data member.
value | Value to assign |
Definition at line 405 of file Molecule_graph_.hpp.
References CMolecule_graph_Base::m_Id, CMolecule_graph_Base::m_set_State, and value.
Assign a value to Id data member.
value | Value to assign |
Definition at line 274 of file Residue_.hpp.
References CResidue_Base::m_Id, CResidue_Base::m_set_State, and value.
Assign a value to Id data member.
value | Value to assign |
Definition at line 428 of file Residue_graph_.hpp.
References CResidue_graph_Base::m_Id, CResidue_graph_Base::m_set_State, and value.
|
inline |
Assign a value to Id data member.
Definition at line 480 of file Atom_.hpp.
References CAtom_Base::m_Id, and CAtom_Base::m_set_State.
|
inline |
Assign a value to Id data member.
Definition at line 412 of file Molecule_graph_.hpp.
References CMolecule_graph_Base::m_Id, and CMolecule_graph_Base::m_set_State.
|
inline |
Assign a value to Id data member.
Definition at line 281 of file Residue_.hpp.
References CResidue_Base::m_Id, and CResidue_Base::m_set_State.
|
inline |
Assign a value to Id data member.
Definition at line 435 of file Residue_graph_.hpp.
References CResidue_graph_Base::m_Id, and CResidue_graph_Base::m_set_State.
|
inline |
Assign a value to Inter_molecule_bonds data member.
Definition at line 343 of file Biostruc_graph_.hpp.
References CBiostruc_graph_Base::m_Inter_molecule_bonds, and CBiostruc_graph_Base::m_set_State.
|
inline |
Assign a value to Inter_residue_bonds data member.
Definition at line 508 of file Molecule_graph_.hpp.
References CMolecule_graph_Base::m_Inter_residue_bonds, and CMolecule_graph_Base::m_set_State.
|
inline |
Assign a value to Ionizable_proton data member.
value | Value to assign |
Definition at line 634 of file Atom_.hpp.
References CAtom_Base::m_Ionizable_proton, CAtom_Base::m_set_State, and value.
|
inline |
Assign a value to Ionizable_proton data member.
Definition at line 641 of file Atom_.hpp.
References CAtom_Base::IsSetIonizable_proton(), CAtom_Base::m_Ionizable_proton, CAtom_Base::m_set_State, and CSerialObject::UnassignedByte().
|
inline |
Assign a value to Iupac_code data member.
Definition at line 552 of file Atom_.hpp.
References CAtom_Base::m_Iupac_code, and CAtom_Base::m_set_State.
|
inline |
Assign a value to Iupac_code data member.
Definition at line 532 of file Residue_graph_.hpp.
References CResidue_graph_Base::m_Iupac_code, and CResidue_graph_Base::m_set_State.
Select the variant and set its data.
value | Variant data. |
Definition at line 109 of file Residue_graph_pntr_.cpp.
References CResidue_graph_pntr_Base::e_Local, eDoNotResetVariant, CResidue_graph_pntr_Base::m_Local, CResidue_graph_pntr_Base::Select(), and value.
|
inline |
Select the variant.
Definition at line 310 of file Residue_graph_pntr_.hpp.
References CResidue_graph_pntr_Base::e_Local, eDoNotResetVariant, CResidue_graph_pntr_Base::m_Local, and CResidue_graph_pntr_Base::Select().
|
inline |
Assign a value to Molecule_graphs data member.
Definition at line 318 of file Biostruc_graph_.hpp.
References CBiostruc_graph_Base::m_Molecule_graphs, and CBiostruc_graph_Base::m_set_State.
|
inline |
Assign a value to Molecule_id data member.
value | Value to assign |
Definition at line 270 of file Atom_pntr_.hpp.
References CAtom_pntr_Base::m_Molecule_id, CAtom_pntr_Base::m_set_State, and value.
|
inline |
Assign a value to Molecule_id data member.
Definition at line 277 of file Atom_pntr_.hpp.
References CAtom_pntr_Base::m_Molecule_id, and CAtom_pntr_Base::m_set_State.
|
inline |
Select the variant and set its data.
value | Variant data. |
Definition at line 655 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::e_Molecule_type, eDoNotResetVariant, CBiomol_descr_Base::m_Molecule_type, CBiomol_descr_Base::Select(), and value.
|
inline |
Select the variant.
Definition at line 648 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::e_Molecule_type, eDoNotResetVariant, CBiomol_descr_Base::m_Molecule_type, and CBiomol_descr_Base::Select().
Assign a value to N1 data member.
value | Value to assign |
Definition at line 406 of file Chiral_center_.hpp.
References CChiral_center_Base::m_N1, CChiral_center_Base::m_set_State, and value.
|
inline |
Assign a value to N1 data member.
Definition at line 413 of file Chiral_center_.hpp.
References CChiral_center_Base::m_N1, and CChiral_center_Base::m_set_State.
Assign a value to N2 data member.
value | Value to assign |
Definition at line 448 of file Chiral_center_.hpp.
References CChiral_center_Base::m_N2, CChiral_center_Base::m_set_State, and value.
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Assign a value to N2 data member.
Definition at line 455 of file Chiral_center_.hpp.
References CChiral_center_Base::m_N2, and CChiral_center_Base::m_set_State.
Assign a value to N3 data member.
value | Value to assign |
Definition at line 490 of file Chiral_center_.hpp.
References CChiral_center_Base::m_N3, CChiral_center_Base::m_set_State, and value.
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Assign a value to N3 data member.
Definition at line 497 of file Chiral_center_.hpp.
References CChiral_center_Base::m_N3, and CChiral_center_Base::m_set_State.
Assign a value to Name data member.
value | Value to assign |
Definition at line 508 of file Atom_.hpp.
References CAtom_Base::m_Name, CAtom_Base::m_set_State, and value.
Select the variant and set its data.
value | Variant data. |
Definition at line 153 of file Biomol_descr_.cpp.
References CBiomol_descr_Base::e_Name, eDoNotResetVariant, CBiomol_descr_Base::m_string, CBiomol_descr_Base::Select(), and value.
Assign a value to Name data member.
value | Value to assign |
Definition at line 309 of file Residue_.hpp.
References CResidue_Base::m_Name, CResidue_Base::m_set_State, and value.
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Definition at line 515 of file Atom_.hpp.
References CAtom_Base::m_Name, CAtom_Base::m_set_State, and value.
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Definition at line 316 of file Residue_.hpp.
References CResidue_Base::m_Name, CResidue_Base::m_set_State, and value.
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Assign a value to Name data member.
Definition at line 522 of file Atom_.hpp.
References CAtom_Base::IsSetName(), CAtom_Base::m_Name, CAtom_Base::m_set_State, and CSerialObject::UnassignedString().
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Select the variant.
Definition at line 509 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::e_Name, eDoNotResetVariant, CBiomol_descr_Base::m_string, and CBiomol_descr_Base::Select().
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Assign a value to Name data member.
Definition at line 323 of file Residue_.hpp.
References CResidue_Base::IsSetName(), CResidue_Base::m_Name, CResidue_Base::m_set_State, and CSerialObject::UnassignedString().
void CBiomol_descr_Base::SetOrganism | ( | CBiomol_descr_Base::TOrganism & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 195 of file Biomol_descr_.cpp.
References CObject::AddReference(), CBiomol_descr_Base::e_Organism, CBiomol_descr_Base::m_choice, CBiomol_descr_Base::m_object, CBiomol_descr_Base::ResetSelection(), and value.
CBiomol_descr_Base::TOrganism & CBiomol_descr_Base::SetOrganism | ( | void | ) |
Select the variant.
Definition at line 189 of file Biomol_descr_.cpp.
References CBiomol_descr_Base::e_Organism, eDoNotResetVariant, CBiomol_descr_Base::m_object, and CBiomol_descr_Base::Select().
void CBiomol_descr_Base::SetOther_comment | ( | const TOther_comment & | value | ) |
Select the variant and set its data.
value | Variant data. |
Definition at line 177 of file Biomol_descr_.cpp.
References CBiomol_descr_Base::e_Other_comment, eDoNotResetVariant, CBiomol_descr_Base::m_string, CBiomol_descr_Base::Select(), and value.
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Select the variant.
Definition at line 589 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::e_Other_comment, eDoNotResetVariant, CBiomol_descr_Base::m_string, and CBiomol_descr_Base::Select().
void CBiomol_descr_Base::SetPdb_class | ( | const TPdb_class & | value | ) |
Select the variant and set its data.
value | Variant data. |
Definition at line 159 of file Biomol_descr_.cpp.
References CBiomol_descr_Base::e_Pdb_class, eDoNotResetVariant, CBiomol_descr_Base::m_string, CBiomol_descr_Base::Select(), and value.
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Select the variant.
Definition at line 529 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::e_Pdb_class, eDoNotResetVariant, CBiomol_descr_Base::m_string, and CBiomol_descr_Base::Select().
void CBiomol_descr_Base::SetPdb_comment | ( | const TPdb_comment & | value | ) |
Select the variant and set its data.
value | Variant data. |
Definition at line 171 of file Biomol_descr_.cpp.
References CBiomol_descr_Base::e_Pdb_comment, eDoNotResetVariant, CBiomol_descr_Base::m_string, CBiomol_descr_Base::Select(), and value.
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Select the variant.
Definition at line 569 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::e_Pdb_comment, eDoNotResetVariant, CBiomol_descr_Base::m_string, and CBiomol_descr_Base::Select().
void CBiomol_descr_Base::SetPdb_source | ( | const TPdb_source & | value | ) |
Select the variant and set its data.
value | Variant data. |
Definition at line 165 of file Biomol_descr_.cpp.
References CBiomol_descr_Base::e_Pdb_source, eDoNotResetVariant, CBiomol_descr_Base::m_string, CBiomol_descr_Base::Select(), and value.
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Select the variant.
Definition at line 549 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::e_Pdb_source, eDoNotResetVariant, CBiomol_descr_Base::m_string, and CBiomol_descr_Base::Select().
void CResidue_Base::SetResidue_graph | ( | CResidue_Base::TResidue_graph & | value | ) |
Assign a value to Residue_graph data member.
value | Reference to value. |
Definition at line 66 of file Residue_.cpp.
References CResidue_Base::m_Residue_graph, and value.
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Assign a value to Residue_graph data member.
Definition at line 356 of file Residue_.hpp.
References CResidue_Base::m_Residue_graph, and CResidue_Base::ResetResidue_graph().
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Assign a value to Residue_graph_id data member.
value | Value to assign |
Definition at line 260 of file Biost_resid_graph_set_pntr_.hpp.
References CBiostruc_residue_graph_set_pntr_Base::m_Residue_graph_id, CBiostruc_residue_graph_set_pntr_Base::m_set_State, and value.
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Assign a value to Residue_graph_id data member.
value | Value to assign |
Definition at line 260 of file Biostruc_graph_pntr_.hpp.
References CBiostruc_graph_pntr_Base::m_Residue_graph_id, CBiostruc_graph_pntr_Base::m_set_State, and value.
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Assign a value to Residue_graph_id data member.
Definition at line 267 of file Biost_resid_graph_set_pntr_.hpp.
References CBiostruc_residue_graph_set_pntr_Base::m_Residue_graph_id, and CBiostruc_residue_graph_set_pntr_Base::m_set_State.
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Assign a value to Residue_graph_id data member.
Definition at line 267 of file Biostruc_graph_pntr_.hpp.
References CBiostruc_graph_pntr_Base::m_Residue_graph_id, and CBiostruc_graph_pntr_Base::m_set_State.
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Assign a value to Residue_graphs data member.
Definition at line 368 of file Biostruc_graph_.hpp.
References CBiostruc_graph_Base::m_Residue_graphs, and CBiostruc_graph_Base::m_set_State.
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Assign a value to Residue_id data member.
value | Value to assign |
Definition at line 312 of file Atom_pntr_.hpp.
References CAtom_pntr_Base::m_Residue_id, CAtom_pntr_Base::m_set_State, and value.
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Assign a value to Residue_id data member.
Definition at line 319 of file Atom_pntr_.hpp.
References CAtom_pntr_Base::m_Residue_id, and CAtom_pntr_Base::m_set_State.
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Assign a value to Residue_sequence data member.
Definition at line 483 of file Molecule_graph_.hpp.
References CMolecule_graph_Base::m_Residue_sequence, and CMolecule_graph_Base::m_set_State.
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Assign a value to Residue_type data member.
value | Value to assign |
Definition at line 495 of file Residue_graph_.hpp.
References CResidue_graph_Base::m_Residue_type, CResidue_graph_Base::m_set_State, and value.
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Assign a value to Residue_type data member.
Definition at line 502 of file Residue_graph_.hpp.
References CResidue_graph_Base::IsSetResidue_type(), CResidue_graph_Base::m_Residue_type, CResidue_graph_Base::m_set_State, and CSerialObject::UnassignedByte().
void CMolecule_graph_Base::SetSeq_id | ( | CMolecule_graph_Base::TSeq_id & | value | ) |
Assign a value to Seq_id data member.
value | Reference to value. |
Definition at line 65 of file Molecule_graph_.cpp.
References CMolecule_graph_Base::m_Seq_id, and value.
CMolecule_graph_Base::TSeq_id & CMolecule_graph_Base::SetSeq_id | ( | void | ) |
Assign a value to Seq_id data member.
Definition at line 70 of file Molecule_graph_.cpp.
References CMolecule_graph_Base::m_Seq_id.
Assign a value to Sid data member.
value | Value to assign |
Definition at line 543 of file Molecule_graph_.hpp.
References CMolecule_graph_Base::m_set_State, CMolecule_graph_Base::m_Sid, and value.
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Assign a value to Sid data member.
Definition at line 550 of file Molecule_graph_.hpp.
References CMolecule_graph_Base::m_set_State, and CMolecule_graph_Base::m_Sid.
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Assign a value to Sign data member.
value | Value to assign |
Definition at line 532 of file Chiral_center_.hpp.
References CChiral_center_Base::m_set_State, CChiral_center_Base::m_Sign, and value.
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Assign a value to Sign data member.
Definition at line 539 of file Chiral_center_.hpp.
References CChiral_center_Base::IsSetSign(), CChiral_center_Base::m_set_State, CChiral_center_Base::m_Sign, and CSerialObject::UnassignedByte().
void CResidue_graph_pntr_Base::SetStandard | ( | CResidue_graph_pntr_Base::TStandard & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 149 of file Residue_graph_pntr_.cpp.
References CObject::AddReference(), CResidue_graph_pntr_Base::e_Standard, CResidue_graph_pntr_Base::m_choice, CResidue_graph_pntr_Base::m_object, CResidue_graph_pntr_Base::ResetSelection(), and value.
CResidue_graph_pntr_Base::TStandard & CResidue_graph_pntr_Base::SetStandard | ( | void | ) |
Select the variant.
Definition at line 143 of file Residue_graph_pntr_.cpp.
References CResidue_graph_pntr_Base::e_Standard, eDoNotResetVariant, CResidue_graph_pntr_Base::m_object, and CResidue_graph_pntr_Base::Select().
void CBiomol_descr_Base::ThrowInvalidSelection | ( | E_Choice | index | ) | const |
Throw 'InvalidSelection' exception.
index | Expected selection. |
Definition at line 148 of file Biomol_descr_.cpp.
References DIAG_COMPILE_INFO, CBiomol_descr_Base::m_choice, and CBiomol_descr_Base::sm_SelectionNames.
Referenced by CBiomol_descr_Base::CheckSelected().
void CResidue_graph_pntr_Base::ThrowInvalidSelection | ( | E_Choice | index | ) | const |
Throw 'InvalidSelection' exception.
index | Expected selection. |
Definition at line 104 of file Residue_graph_pntr_.cpp.
References DIAG_COMPILE_INFO, CResidue_graph_pntr_Base::m_choice, and CResidue_graph_pntr_Base::sm_SelectionNames.
Referenced by CResidue_graph_pntr_Base::CheckSelected().
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Which variant is currently selected.
Definition at line 467 of file Biomol_descr_.hpp.
References CBiomol_descr_Base::m_choice.
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Which variant is currently selected.
Definition at line 268 of file Residue_graph_pntr_.hpp.
References CResidue_graph_pntr_Base::m_choice.
CAtom_pntr::~CAtom_pntr | ( | void | ) |
Definition at line 50 of file Atom_pntr.cpp.
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Definition at line 77 of file Atom_pntr_.cpp.
CAtom_pntr_set::~CAtom_pntr_set | ( | void | ) |
Definition at line 50 of file Atom_pntr_set.cpp.
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Definition at line 74 of file Atom_pntr_set_.cpp.
CBiomol_descr::~CBiomol_descr | ( | void | ) |
Definition at line 50 of file Biomol_descr.cpp.
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Definition at line 254 of file Biomol_descr_.cpp.
References CBiomol_descr_Base::Reset().
CBiostruc_graph::~CBiostruc_graph | ( | void | ) |
Definition at line 50 of file Biostruc_graph.cpp.
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Definition at line 106 of file Biostruc_graph_.cpp.
CBiostruc_graph_pntr::~CBiostruc_graph_pntr | ( | void | ) |
Definition at line 50 of file Biostruc_graph_pntr.cpp.
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Definition at line 93 of file Biostruc_graph_pntr_.cpp.
CBiostruc_residue_graph_set_pntr::~CBiostruc_residue_graph_set_pntr | ( | void | ) |
Definition at line 50 of file Biost_resid_graph_set_pntr.cpp.
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Definition at line 93 of file Biost_resid_graph_set_pntr_.cpp.
CChiral_center::~CChiral_center | ( | void | ) |
Definition at line 50 of file Chiral_center.cpp.
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Definition at line 90 of file Chiral_center_.cpp.
CInter_residue_bond::~CInter_residue_bond | ( | void | ) |
Definition at line 50 of file Inter_residue_bond.cpp.
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Definition at line 124 of file Inter_residue_bond_.cpp.
CIntra_residue_bond::~CIntra_residue_bond | ( | void | ) |
Definition at line 50 of file Intra_residue_bond.cpp.
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Definition at line 91 of file Intra_residue_bond_.cpp.
CMolecule_graph::~CMolecule_graph | ( | void | ) |
Definition at line 50 of file Molecule_graph.cpp.
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Definition at line 122 of file Molecule_graph_.cpp.
CResidue::~CResidue | ( | void | ) |
Definition at line 50 of file Residue.cpp.
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Definition at line 101 of file Residue_.cpp.
CResidue_graph::~CResidue_graph | ( | void | ) |
Definition at line 50 of file Residue_graph.cpp.
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Definition at line 130 of file Residue_graph_.cpp.
CResidue_graph_pntr::~CResidue_graph_pntr | ( | void | ) |
Definition at line 50 of file Residue_graph_pntr.cpp.
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Definition at line 180 of file Residue_graph_pntr_.cpp.
References CResidue_graph_pntr_Base::Reset().
union { ... } |
union { ... } |
TAssembly_type CBiomol_descr_Base::m_Assembly_type |
Definition at line 450 of file Biomol_descr_.hpp.
Referenced by CBiomol_descr_Base::DoSelect(), CBiomol_descr_Base::GetAssembly_type(), and CBiomol_descr_Base::SetAssembly_type().
TAssembly_type { ... } ::m_Assembly_type |
Definition at line 450 of file Biomol_descr_.hpp.
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Definition at line 229 of file Atom_pntr_.hpp.
Referenced by CAtom_pntr_Base::GetAtom_id(), CAtom_pntr_Base::ResetAtom_id(), and CAtom_pntr_Base::SetAtom_id().
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Definition at line 242 of file Inter_residue_bond_.hpp.
Referenced by CInter_residue_bond_Base::GetAtom_id_1(), CInter_residue_bond_Base::IsSetAtom_id_1(), CInter_residue_bond_Base::ResetAtom_id_1(), and CInter_residue_bond_Base::SetAtom_id_1().
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Definition at line 246 of file Intra_residue_bond_.hpp.
Referenced by CIntra_residue_bond_Base::GetAtom_id_1(), CIntra_residue_bond_Base::ResetAtom_id_1(), and CIntra_residue_bond_Base::SetAtom_id_1().
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Definition at line 243 of file Inter_residue_bond_.hpp.
Referenced by CInter_residue_bond_Base::GetAtom_id_2(), CInter_residue_bond_Base::IsSetAtom_id_2(), CInter_residue_bond_Base::ResetAtom_id_2(), and CInter_residue_bond_Base::SetAtom_id_2().
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Definition at line 247 of file Intra_residue_bond_.hpp.
Referenced by CIntra_residue_bond_Base::GetAtom_id_2(), CIntra_residue_bond_Base::ResetAtom_id_2(), and CIntra_residue_bond_Base::SetAtom_id_2().
Definition at line 385 of file Residue_graph_.hpp.
Referenced by CResidue_graph_Base::GetAtoms(), CResidue_graph_Base::ResetAtoms(), and CResidue_graph_Base::SetAtoms().
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Definition at line 188 of file Biostruc_graph_pntr_.hpp.
Referenced by CBiostruc_graph_pntr_Base::GetBiostruc_id(), CBiostruc_graph_pntr_Base::IsSetBiostruc_id(), CBiostruc_graph_pntr_Base::ResetBiostruc_id(), and CBiostruc_graph_pntr_Base::SetBiostruc_id().
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Definition at line 188 of file Biost_resid_graph_set_pntr_.hpp.
Referenced by CBiostruc_residue_graph_set_pntr_Base::GetBiostruc_residue_graph_set_id(), CBiostruc_residue_graph_set_pntr_Base::IsSetBiostruc_residue_graph_set_id(), CBiostruc_residue_graph_set_pntr_Base::ResetBiostruc_residue_graph_set_id(), and CBiostruc_residue_graph_set_pntr_Base::SetBiostruc_residue_graph_set_id().
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Definition at line 244 of file Inter_residue_bond_.hpp.
Referenced by CInter_residue_bond_Base::GetBond_order(), CInter_residue_bond_Base::ResetBond_order(), and CInter_residue_bond_Base::SetBond_order().
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Definition at line 248 of file Intra_residue_bond_.hpp.
Referenced by CIntra_residue_bond_Base::GetBond_order(), CIntra_residue_bond_Base::ResetBond_order(), and CIntra_residue_bond_Base::SetBond_order().
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Definition at line 386 of file Residue_graph_.hpp.
Referenced by CResidue_graph_Base::GetBonds(), CResidue_graph_Base::ResetBonds(), and CResidue_graph_Base::SetBonds().
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Definition at line 319 of file Chiral_center_.hpp.
Referenced by CChiral_center_Base::GetC(), CChiral_center_Base::ResetC(), and CChiral_center_Base::SetC().
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Definition at line 387 of file Residue_graph_.hpp.
Referenced by CResidue_graph_Base::GetChiral_centers(), CResidue_graph_Base::ResetChiral_centers(), and CResidue_graph_Base::SetChiral_centers().
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Definition at line 443 of file Biomol_descr_.hpp.
Referenced by CBiomol_descr_Base::CheckSelected(), CBiomol_descr_Base::DoSelect(), CBiomol_descr_Base::IsAssembly_type(), CBiomol_descr_Base::IsAttribution(), CBiomol_descr_Base::IsMolecule_type(), CBiomol_descr_Base::IsName(), CBiomol_descr_Base::IsOrganism(), CBiomol_descr_Base::IsOther_comment(), CBiomol_descr_Base::IsPdb_class(), CBiomol_descr_Base::IsPdb_comment(), CBiomol_descr_Base::IsPdb_source(), CBiomol_descr_Base::Reset(), CBiomol_descr_Base::ResetSelection(), CBiomol_descr_Base::SetAttribution(), CBiomol_descr_Base::SetOrganism(), CBiomol_descr_Base::ThrowInvalidSelection(), and CBiomol_descr_Base::Which().
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Definition at line 246 of file Residue_graph_pntr_.hpp.
Referenced by CResidue_graph_pntr_Base::CheckSelected(), CResidue_graph_pntr_Base::DoSelect(), CResidue_graph_pntr_Base::IsBiostruc(), CResidue_graph_pntr_Base::IsLocal(), CResidue_graph_pntr_Base::IsStandard(), CResidue_graph_pntr_Base::Reset(), CResidue_graph_pntr_Base::ResetSelection(), CResidue_graph_pntr_Base::SetBiostruc(), CResidue_graph_pntr_Base::SetStandard(), CResidue_graph_pntr_Base::ThrowInvalidSelection(), and CResidue_graph_pntr_Base::Which().
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Definition at line 139 of file Atom_pntr_set_.hpp.
Referenced by CAtom_pntr_set_Base::Get(), CAtom_pntr_set_Base::Reset(), and CAtom_pntr_set_Base::Set().
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Definition at line 259 of file Biostruc_graph_.hpp.
Referenced by CBiostruc_graph_Base::GetDescr(), CBiostruc_graph_Base::ResetDescr(), and CBiostruc_graph_Base::SetDescr().
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Definition at line 360 of file Molecule_graph_.hpp.
Referenced by CMolecule_graph_Base::GetDescr(), CMolecule_graph_Base::ResetDescr(), and CMolecule_graph_Base::SetDescr().
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Definition at line 382 of file Residue_graph_.hpp.
Referenced by CResidue_graph_Base::GetDescr(), CResidue_graph_Base::ResetDescr(), and CResidue_graph_Base::SetDescr().
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Definition at line 431 of file Atom_.hpp.
Referenced by CAtom_Base::GetElement(), CAtom_Base::ResetElement(), and CAtom_Base::SetElement().
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Definition at line 428 of file Atom_.hpp.
Referenced by CAtom_Base::GetId(), CAtom_Base::ResetId(), and CAtom_Base::SetId().
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Definition at line 359 of file Molecule_graph_.hpp.
Referenced by CMolecule_graph_Base::GetId(), CMolecule_graph_Base::ResetId(), and CMolecule_graph_Base::SetId().
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Definition at line 231 of file Residue_.hpp.
Referenced by CResidue_Base::GetId(), CResidue_Base::ResetId(), and CResidue_Base::SetId().
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Definition at line 381 of file Residue_graph_.hpp.
Referenced by CResidue_graph_Base::GetId(), CResidue_graph_Base::ResetId(), and CResidue_graph_Base::SetId().
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Definition at line 261 of file Biostruc_graph_.hpp.
Referenced by CBiostruc_graph_Base::GetInter_molecule_bonds(), CBiostruc_graph_Base::ResetInter_molecule_bonds(), and CBiostruc_graph_Base::SetInter_molecule_bonds().
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Definition at line 363 of file Molecule_graph_.hpp.
Referenced by CMolecule_graph_Base::GetInter_residue_bonds(), CMolecule_graph_Base::ResetInter_residue_bonds(), and CMolecule_graph_Base::SetInter_residue_bonds().
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Definition at line 432 of file Atom_.hpp.
Referenced by CAtom_Base::GetIonizable_proton(), CAtom_Base::ResetIonizable_proton(), and CAtom_Base::SetIonizable_proton().
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Definition at line 430 of file Atom_.hpp.
Referenced by CAtom_Base::GetIupac_code(), CAtom_Base::ResetIupac_code(), and CAtom_Base::SetIupac_code().
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Definition at line 384 of file Residue_graph_.hpp.
Referenced by CResidue_graph_Base::GetIupac_code(), CResidue_graph_Base::ResetIupac_code(), and CResidue_graph_Base::SetIupac_code().
NCBI_NS_NCBI::CUnionBuffer<TLocal> CResidue_graph_pntr_Base::m_Local |
Definition at line 253 of file Residue_graph_pntr_.hpp.
Referenced by CResidue_graph_pntr_Base::DoSelect(), CResidue_graph_pntr_Base::GetLocal(), CResidue_graph_pntr_Base::ResetSelection(), and CResidue_graph_pntr_Base::SetLocal().
NCBI_NS_NCBI::CUnionBuffer<TLocal> { ... } ::m_Local |
Definition at line 253 of file Residue_graph_pntr_.hpp.
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Definition at line 260 of file Biostruc_graph_.hpp.
Referenced by CBiostruc_graph_Base::GetMolecule_graphs(), CBiostruc_graph_Base::ResetMolecule_graphs(), and CBiostruc_graph_Base::SetMolecule_graphs().
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Definition at line 227 of file Atom_pntr_.hpp.
Referenced by CAtom_pntr_Base::GetMolecule_id(), CAtom_pntr_Base::ResetMolecule_id(), and CAtom_pntr_Base::SetMolecule_id().
TMolecule_type CBiomol_descr_Base::m_Molecule_type |
Definition at line 451 of file Biomol_descr_.hpp.
Referenced by CBiomol_descr_Base::DoSelect(), CBiomol_descr_Base::GetMolecule_type(), and CBiomol_descr_Base::SetMolecule_type().
TMolecule_type { ... } ::m_Molecule_type |
Definition at line 451 of file Biomol_descr_.hpp.
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Definition at line 320 of file Chiral_center_.hpp.
Referenced by CChiral_center_Base::GetN1(), CChiral_center_Base::ResetN1(), and CChiral_center_Base::SetN1().
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Definition at line 321 of file Chiral_center_.hpp.
Referenced by CChiral_center_Base::GetN2(), CChiral_center_Base::ResetN2(), and CChiral_center_Base::SetN2().
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Definition at line 322 of file Chiral_center_.hpp.
Referenced by CChiral_center_Base::GetN3(), CChiral_center_Base::ResetN3(), and CChiral_center_Base::SetN3().
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Definition at line 429 of file Atom_.hpp.
Referenced by CAtom_Base::GetName(), CAtom_Base::ResetName(), and CAtom_Base::SetName().
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Definition at line 232 of file Residue_.hpp.
Referenced by CResidue_Base::GetName(), CResidue_Base::ResetName(), and CResidue_Base::SetName().
NCBI_NS_NCBI::CSerialObject* CBiomol_descr_Base::m_object |
Definition at line 453 of file Biomol_descr_.hpp.
Referenced by CBiomol_descr_Base::DoSelect(), CBiomol_descr_Base::GetAttribution(), CBiomol_descr_Base::GetOrganism(), CBiomol_descr_Base::ResetSelection(), CBiomol_descr_Base::SetAttribution(), and CBiomol_descr_Base::SetOrganism().
NCBI_NS_NCBI::CSerialObject* { ... } ::m_object |
Definition at line 453 of file Biomol_descr_.hpp.
NCBI_NS_NCBI::CSerialObject* CResidue_graph_pntr_Base::m_object |
Definition at line 254 of file Residue_graph_pntr_.hpp.
Referenced by CResidue_graph_pntr_Base::DoSelect(), CResidue_graph_pntr_Base::GetBiostruc(), CResidue_graph_pntr_Base::GetStandard(), CResidue_graph_pntr_Base::ResetSelection(), CResidue_graph_pntr_Base::SetBiostruc(), and CResidue_graph_pntr_Base::SetStandard().
NCBI_NS_NCBI::CSerialObject* { ... } ::m_object |
Definition at line 254 of file Residue_graph_pntr_.hpp.
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Definition at line 233 of file Residue_.hpp.
Referenced by CResidue_Base::GetResidue_graph(), CResidue_Base::IsSetResidue_graph(), CResidue_Base::ResetResidue_graph(), and CResidue_Base::SetResidue_graph().
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Definition at line 189 of file Biostruc_graph_pntr_.hpp.
Referenced by CBiostruc_graph_pntr_Base::GetResidue_graph_id(), CBiostruc_graph_pntr_Base::ResetResidue_graph_id(), and CBiostruc_graph_pntr_Base::SetResidue_graph_id().
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Definition at line 262 of file Biostruc_graph_.hpp.
Referenced by CBiostruc_graph_Base::GetResidue_graphs(), CBiostruc_graph_Base::ResetResidue_graphs(), and CBiostruc_graph_Base::SetResidue_graphs().
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Definition at line 228 of file Atom_pntr_.hpp.
Referenced by CAtom_pntr_Base::GetResidue_id(), CAtom_pntr_Base::ResetResidue_id(), and CAtom_pntr_Base::SetResidue_id().
Definition at line 362 of file Molecule_graph_.hpp.
Referenced by CMolecule_graph_Base::GetResidue_sequence(), CMolecule_graph_Base::ResetResidue_sequence(), and CMolecule_graph_Base::SetResidue_sequence().
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Definition at line 383 of file Residue_graph_.hpp.
Referenced by CResidue_graph_Base::GetResidue_type(), CResidue_graph_Base::ResetResidue_type(), and CResidue_graph_Base::SetResidue_type().
Definition at line 361 of file Molecule_graph_.hpp.
Referenced by CMolecule_graph_Base::GetSeq_id(), CMolecule_graph_Base::IsSetSeq_id(), CMolecule_graph_Base::ResetSeq_id(), and CMolecule_graph_Base::SetSeq_id().
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Definition at line 427 of file Atom_.hpp.
Referenced by CAtom_Base::CAtom_Base(), CAtom_Base::IsSetElement(), CAtom_Base::IsSetId(), CAtom_Base::IsSetIonizable_proton(), CAtom_Base::IsSetIupac_code(), CAtom_Base::IsSetName(), CAtom_Base::ResetElement(), CAtom_Base::ResetId(), CAtom_Base::ResetIonizable_proton(), CAtom_Base::ResetIupac_code(), CAtom_Base::ResetName(), CAtom_Base::SetElement(), CAtom_Base::SetId(), CAtom_Base::SetIonizable_proton(), CAtom_Base::SetIupac_code(), and CAtom_Base::SetName().
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Definition at line 226 of file Atom_pntr_.hpp.
Referenced by CAtom_pntr_Base::CAtom_pntr_Base(), CAtom_pntr_Base::IsSetAtom_id(), CAtom_pntr_Base::IsSetMolecule_id(), CAtom_pntr_Base::IsSetResidue_id(), CAtom_pntr_Base::ResetAtom_id(), CAtom_pntr_Base::ResetMolecule_id(), CAtom_pntr_Base::ResetResidue_id(), CAtom_pntr_Base::SetAtom_id(), CAtom_pntr_Base::SetMolecule_id(), and CAtom_pntr_Base::SetResidue_id().
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Definition at line 138 of file Atom_pntr_set_.hpp.
Referenced by CAtom_pntr_set_Base::CAtom_pntr_set_Base(), CAtom_pntr_set_Base::IsSet(), CAtom_pntr_set_Base::Reset(), and CAtom_pntr_set_Base::Set().
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Definition at line 187 of file Biost_resid_graph_set_pntr_.hpp.
Referenced by CBiostruc_residue_graph_set_pntr_Base::CBiostruc_residue_graph_set_pntr_Base(), CBiostruc_residue_graph_set_pntr_Base::IsSetResidue_graph_id(), CBiostruc_residue_graph_set_pntr_Base::ResetResidue_graph_id(), and CBiostruc_residue_graph_set_pntr_Base::SetResidue_graph_id().
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Definition at line 258 of file Biostruc_graph_.hpp.
Referenced by CBiostruc_graph_Base::CBiostruc_graph_Base(), CBiostruc_graph_Base::IsSetDescr(), CBiostruc_graph_Base::IsSetInter_molecule_bonds(), CBiostruc_graph_Base::IsSetMolecule_graphs(), CBiostruc_graph_Base::IsSetResidue_graphs(), CBiostruc_graph_Base::ResetDescr(), CBiostruc_graph_Base::ResetInter_molecule_bonds(), CBiostruc_graph_Base::ResetMolecule_graphs(), CBiostruc_graph_Base::ResetResidue_graphs(), CBiostruc_graph_Base::SetDescr(), CBiostruc_graph_Base::SetInter_molecule_bonds(), CBiostruc_graph_Base::SetMolecule_graphs(), and CBiostruc_graph_Base::SetResidue_graphs().
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Definition at line 318 of file Chiral_center_.hpp.
Referenced by CChiral_center_Base::CChiral_center_Base(), CChiral_center_Base::IsSetC(), CChiral_center_Base::IsSetN1(), CChiral_center_Base::IsSetN2(), CChiral_center_Base::IsSetN3(), CChiral_center_Base::IsSetSign(), CChiral_center_Base::ResetC(), CChiral_center_Base::ResetN1(), CChiral_center_Base::ResetN2(), CChiral_center_Base::ResetN3(), CChiral_center_Base::ResetSign(), CChiral_center_Base::SetC(), CChiral_center_Base::SetN1(), CChiral_center_Base::SetN2(), CChiral_center_Base::SetN3(), and CChiral_center_Base::SetSign().
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Definition at line 241 of file Inter_residue_bond_.hpp.
Referenced by CInter_residue_bond_Base::CInter_residue_bond_Base(), CInter_residue_bond_Base::IsSetBond_order(), CInter_residue_bond_Base::ResetBond_order(), and CInter_residue_bond_Base::SetBond_order().
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Definition at line 245 of file Intra_residue_bond_.hpp.
Referenced by CIntra_residue_bond_Base::CIntra_residue_bond_Base(), CIntra_residue_bond_Base::IsSetAtom_id_1(), CIntra_residue_bond_Base::IsSetAtom_id_2(), CIntra_residue_bond_Base::IsSetBond_order(), CIntra_residue_bond_Base::ResetAtom_id_1(), CIntra_residue_bond_Base::ResetAtom_id_2(), CIntra_residue_bond_Base::ResetBond_order(), CIntra_residue_bond_Base::SetAtom_id_1(), CIntra_residue_bond_Base::SetAtom_id_2(), and CIntra_residue_bond_Base::SetBond_order().
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Definition at line 358 of file Molecule_graph_.hpp.
Referenced by CMolecule_graph_Base::CMolecule_graph_Base(), CMolecule_graph_Base::IsSetDescr(), CMolecule_graph_Base::IsSetId(), CMolecule_graph_Base::IsSetInter_residue_bonds(), CMolecule_graph_Base::IsSetResidue_sequence(), CMolecule_graph_Base::IsSetSid(), CMolecule_graph_Base::ResetDescr(), CMolecule_graph_Base::ResetId(), CMolecule_graph_Base::ResetInter_residue_bonds(), CMolecule_graph_Base::ResetResidue_sequence(), CMolecule_graph_Base::ResetSid(), CMolecule_graph_Base::SetDescr(), CMolecule_graph_Base::SetId(), CMolecule_graph_Base::SetInter_residue_bonds(), CMolecule_graph_Base::SetResidue_sequence(), and CMolecule_graph_Base::SetSid().
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Definition at line 230 of file Residue_.hpp.
Referenced by CResidue_Base::CResidue_Base(), CResidue_Base::IsSetId(), CResidue_Base::IsSetName(), CResidue_Base::ResetId(), CResidue_Base::ResetName(), CResidue_Base::SetId(), and CResidue_Base::SetName().
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Definition at line 380 of file Residue_graph_.hpp.
Referenced by CResidue_graph_Base::CResidue_graph_Base(), CResidue_graph_Base::IsSetAtoms(), CResidue_graph_Base::IsSetBonds(), CResidue_graph_Base::IsSetChiral_centers(), CResidue_graph_Base::IsSetDescr(), CResidue_graph_Base::IsSetId(), CResidue_graph_Base::IsSetIupac_code(), CResidue_graph_Base::IsSetResidue_type(), CResidue_graph_Base::ResetAtoms(), CResidue_graph_Base::ResetBonds(), CResidue_graph_Base::ResetChiral_centers(), CResidue_graph_Base::ResetDescr(), CResidue_graph_Base::ResetId(), CResidue_graph_Base::ResetIupac_code(), CResidue_graph_Base::ResetResidue_type(), CResidue_graph_Base::SetAtoms(), CResidue_graph_Base::SetBonds(), CResidue_graph_Base::SetChiral_centers(), CResidue_graph_Base::SetDescr(), CResidue_graph_Base::SetId(), CResidue_graph_Base::SetIupac_code(), and CResidue_graph_Base::SetResidue_type().
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Definition at line 364 of file Molecule_graph_.hpp.
Referenced by CMolecule_graph_Base::GetSid(), CMolecule_graph_Base::ResetSid(), and CMolecule_graph_Base::SetSid().
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Definition at line 323 of file Chiral_center_.hpp.
Referenced by CChiral_center_Base::GetSign(), CChiral_center_Base::ResetSign(), and CChiral_center_Base::SetSign().
NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string> { ... } ::m_string |
Definition at line 452 of file Biomol_descr_.hpp.
NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string> CBiomol_descr_Base::m_string |
Definition at line 452 of file Biomol_descr_.hpp.
Referenced by CBiomol_descr_Base::DoSelect(), CBiomol_descr_Base::GetName(), CBiomol_descr_Base::GetOther_comment(), CBiomol_descr_Base::GetPdb_class(), CBiomol_descr_Base::GetPdb_comment(), CBiomol_descr_Base::GetPdb_source(), CBiomol_descr_Base::ResetSelection(), CBiomol_descr_Base::SetName(), CBiomol_descr_Base::SetOther_comment(), CBiomol_descr_Base::SetPdb_class(), CBiomol_descr_Base::SetPdb_comment(), and CBiomol_descr_Base::SetPdb_source().
Definition at line 447 of file Biomol_descr_.hpp.
Referenced by CBiomol_descr_Base::SelectionName(), and CBiomol_descr_Base::ThrowInvalidSelection().
Definition at line 250 of file Residue_graph_pntr_.hpp.
Referenced by CResidue_graph_pntr_Base::SelectionName(), and CResidue_graph_pntr_Base::ThrowInvalidSelection().