NCBI C++ ToolKit
Classes | Typedefs | Enumerations | Enumerator | Functions | Variables
Code generated by DATATOOL from 'mmdb1.asn' (module 'MMDB-Chemical-graph')
+ Collaboration diagram for Code generated by DATATOOL from 'mmdb1.asn' (module 'MMDB-Chemical-graph'):

Classes

class  CAtom
 CAtom –. More...
 
class  CAtom_Base
 Atoms in residue graphs are defined by elemental symbols and names. More...
 
class  CAtom_id
 CAtom_id –. More...
 
class  CAtom_id_Base
 CAtom_id_Base –. More...
 
class  CAtom_pntr
 CAtom_pntr –. More...
 
class  CAtom_pntr_Base
 Atoms, residues and molecules within the current biostruc are referenced by hierarchical pointers. More...
 
class  CAtom_pntr_set
 CAtom_pntr_set –. More...
 
class  CAtom_pntr_set_Base
 CAtom_pntr_set_Base –. More...
 
class  CBiomol_descr
 CBiomol_descr –. More...
 
class  CBiomol_descr_Base
 A biomolecule description refers to the chemical structure of a molecule or component substructures. More...
 
class  CBiostruc_residue_graph_set_pntr
 CBiostruc_residue_graph_set_pntr –. More...
 
class  CBiostruc_residue_graph_set_pntr_Base
 CBiostruc_residue_graph_set_pntr_Base –. More...
 
class  CBiostruc_graph
 CBiostruc_graph –. More...
 
class  CBiostruc_graph_Base
 A biostruc graph contains the complete chemical graph of the biomolecular assembly. More...
 
class  CBiostruc_graph_pntr
 CBiostruc_graph_pntr –. More...
 
class  CBiostruc_graph_pntr_Base
 CBiostruc_graph_pntr_Base –. More...
 
class  CChiral_center
 CChiral_center –. More...
 
class  CChiral_center_Base
 Chiral centers are atoms with tetrahedral geometry. More...
 
class  CInter_residue_bond
 CInter_residue_bond –. More...
 
class  CInter_residue_bond_Base
 Inter-residue bonds are defined by a reference to two atoms. More...
 
class  CIntra_residue_bond
 CIntra_residue_bond –. More...
 
class  CIntra_residue_bond_Base
 Intra-residue-bond specifies connectivity between atoms in Residue-graph. More...
 
class  CMolecule_graph
 CMolecule_graph –. More...
 
class  CMolecule_graph_Base
 A molecule chemical graph is defined by a sequence of residues. More...
 
class  CMolecule_id
 CMolecule_id –. More...
 
class  CMolecule_id_Base
 CMolecule_id_Base –. More...
 
class  CPCSubstance_id
 CPCSubstance_id –. More...
 
class  CPCSubstance_id_Base
 Pubchem substance id. More...
 
class  CResidue
 CResidue –. More...
 
class  CResidue_Base
 Residues may be assigned a text-string name as well as an id number. More...
 
class  CResidue_graph
 CResidue_graph –. More...
 
class  CResidue_graph_Base
 Residue graphs define atomic formulae, connectivity, chirality, and names. More...
 
class  CResidue_graph_id
 CResidue_graph_id –. More...
 
class  CResidue_graph_id_Base
 CResidue_graph_id_Base –. More...
 
class  CResidue_graph_pntr
 CResidue_graph_pntr –. More...
 
class  CResidue_graph_pntr_Base
 Residue graphs from different sources may be referenced within a molecule graph. More...
 
class  CResidue_id
 CResidue_id –. More...
 
class  CResidue_id_Base
 CResidue_id_Base –. More...
 

Typedefs

typedef CAtom_Base CAtom::Tparent
 
typedef CSerialObject CAtom_Base::Tparent
 
typedef CAtom_id CAtom_Base::TId
 
typedef string CAtom_Base::TName
 
typedef list< stringCAtom_Base::TIupac_code
 
typedef EElement CAtom_Base::TElement
 
typedef EIonizable_proton CAtom_Base::TIonizable_proton
 
typedef Tparent::CMemberIndex< E_memberIndex, 6 > CAtom_Base::TmemberIndex
 
typedef CAtom_id_Base CAtom_id::Tparent
 
typedef CStdAliasBase< intCAtom_id_Base::Tparent
 
typedef CAtom_pntr_Base CAtom_pntr::Tparent
 
typedef CSerialObject CAtom_pntr_Base::Tparent
 
typedef CMolecule_id CAtom_pntr_Base::TMolecule_id
 
typedef CResidue_id CAtom_pntr_Base::TResidue_id
 
typedef CAtom_id CAtom_pntr_Base::TAtom_id
 
typedef Tparent::CMemberIndex< E_memberIndex, 4 > CAtom_pntr_Base::TmemberIndex
 
typedef CAtom_pntr_set_Base CAtom_pntr_set::Tparent
 
typedef CSerialObject CAtom_pntr_set_Base::Tparent
 
typedef list< CRef< CAtom_pntr > > CAtom_pntr_set_Base::Tdata
 
typedef CBiomol_descr_Base CBiomol_descr::Tparent
 
typedef CSerialObject CBiomol_descr_Base::Tparent
 
typedef string CBiomol_descr_Base::TName
 
typedef string CBiomol_descr_Base::TPdb_class
 
typedef string CBiomol_descr_Base::TPdb_source
 
typedef string CBiomol_descr_Base::TPdb_comment
 
typedef string CBiomol_descr_Base::TOther_comment
 
typedef CBioSource CBiomol_descr_Base::TOrganism
 
typedef CPub CBiomol_descr_Base::TAttribution
 
typedef int CBiomol_descr_Base::TAssembly_type
 
typedef int CBiomol_descr_Base::TMolecule_type
 
typedef CBiostruc_residue_graph_set_pntr_Base CBiostruc_residue_graph_set_pntr::Tparent
 
typedef CSerialObject CBiostruc_residue_graph_set_pntr_Base::Tparent
 
typedef CBiostruc_id CBiostruc_residue_graph_set_pntr_Base::TBiostruc_residue_graph_set_id
 
typedef CResidue_graph_id CBiostruc_residue_graph_set_pntr_Base::TResidue_graph_id
 
typedef Tparent::CMemberIndex< E_memberIndex, 3 > CBiostruc_residue_graph_set_pntr_Base::TmemberIndex
 
typedef CBiostruc_graph_Base CBiostruc_graph::Tparent
 
typedef CSerialObject CBiostruc_graph_Base::Tparent
 
typedef list< CRef< CBiomol_descr > > CBiostruc_graph_Base::TDescr
 
typedef list< CRef< CMolecule_graph > > CBiostruc_graph_Base::TMolecule_graphs
 
typedef list< CRef< CInter_residue_bond > > CBiostruc_graph_Base::TInter_molecule_bonds
 
typedef list< CRef< CResidue_graph > > CBiostruc_graph_Base::TResidue_graphs
 
typedef Tparent::CMemberIndex< E_memberIndex, 5 > CBiostruc_graph_Base::TmemberIndex
 
typedef CBiostruc_graph_pntr_Base CBiostruc_graph_pntr::Tparent
 
typedef CSerialObject CBiostruc_graph_pntr_Base::Tparent
 
typedef CBiostruc_id CBiostruc_graph_pntr_Base::TBiostruc_id
 
typedef CResidue_graph_id CBiostruc_graph_pntr_Base::TResidue_graph_id
 
typedef Tparent::CMemberIndex< E_memberIndex, 3 > CBiostruc_graph_pntr_Base::TmemberIndex
 
typedef CChiral_center_Base CChiral_center::Tparent
 
typedef CSerialObject CChiral_center_Base::Tparent
 
typedef CAtom_id CChiral_center_Base::TC
 
typedef CAtom_id CChiral_center_Base::TN1
 
typedef CAtom_id CChiral_center_Base::TN2
 
typedef CAtom_id CChiral_center_Base::TN3
 
typedef ESign CChiral_center_Base::TSign
 
typedef Tparent::CMemberIndex< E_memberIndex, 6 > CChiral_center_Base::TmemberIndex
 
typedef CInter_residue_bond_Base CInter_residue_bond::Tparent
 
typedef CSerialObject CInter_residue_bond_Base::Tparent
 
typedef CAtom_pntr CInter_residue_bond_Base::TAtom_id_1
 
typedef CAtom_pntr CInter_residue_bond_Base::TAtom_id_2
 
typedef int CInter_residue_bond_Base::TBond_order
 
typedef Tparent::CMemberIndex< E_memberIndex, 4 > CInter_residue_bond_Base::TmemberIndex
 
typedef CIntra_residue_bond_Base CIntra_residue_bond::Tparent
 
typedef CSerialObject CIntra_residue_bond_Base::Tparent
 
typedef CAtom_id CIntra_residue_bond_Base::TAtom_id_1
 
typedef CAtom_id CIntra_residue_bond_Base::TAtom_id_2
 
typedef int CIntra_residue_bond_Base::TBond_order
 
typedef Tparent::CMemberIndex< E_memberIndex, 4 > CIntra_residue_bond_Base::TmemberIndex
 
typedef CMolecule_graph_Base CMolecule_graph::Tparent
 
typedef CSerialObject CMolecule_graph_Base::Tparent
 
typedef CMolecule_id CMolecule_graph_Base::TId
 
typedef list< CRef< CBiomol_descr > > CMolecule_graph_Base::TDescr
 
typedef CSeq_id CMolecule_graph_Base::TSeq_id
 
typedef list< CRef< CResidue > > CMolecule_graph_Base::TResidue_sequence
 
typedef list< CRef< CInter_residue_bond > > CMolecule_graph_Base::TInter_residue_bonds
 
typedef CPCSubstance_id CMolecule_graph_Base::TSid
 
typedef Tparent::CMemberIndex< E_memberIndex, 7 > CMolecule_graph_Base::TmemberIndex
 
typedef CMolecule_id_Base CMolecule_id::Tparent
 
typedef CStdAliasBase< intCMolecule_id_Base::Tparent
 
typedef CPCSubstance_id_Base CPCSubstance_id::Tparent
 
typedef CStdAliasBase< intCPCSubstance_id_Base::Tparent
 
typedef CResidue_Base CResidue::Tparent
 
typedef CSerialObject CResidue_Base::Tparent
 
typedef CResidue_id CResidue_Base::TId
 
typedef string CResidue_Base::TName
 
typedef CResidue_graph_pntr CResidue_Base::TResidue_graph
 
typedef Tparent::CMemberIndex< E_memberIndex, 4 > CResidue_Base::TmemberIndex
 
typedef CResidue_graph_Base CResidue_graph::Tparent
 
typedef CSerialObject CResidue_graph_Base::Tparent
 
typedef CResidue_graph_id CResidue_graph_Base::TId
 
typedef list< CRef< CBiomol_descr > > CResidue_graph_Base::TDescr
 
typedef int CResidue_graph_Base::TResidue_type
 
typedef list< stringCResidue_graph_Base::TIupac_code
 
typedef list< CRef< CAtom > > CResidue_graph_Base::TAtoms
 
typedef list< CRef< CIntra_residue_bond > > CResidue_graph_Base::TBonds
 
typedef list< CRef< CChiral_center > > CResidue_graph_Base::TChiral_centers
 
typedef Tparent::CMemberIndex< E_memberIndex, 8 > CResidue_graph_Base::TmemberIndex
 
typedef CResidue_graph_id_Base CResidue_graph_id::Tparent
 
typedef CStdAliasBase< intCResidue_graph_id_Base::Tparent
 
typedef CResidue_graph_pntr_Base CResidue_graph_pntr::Tparent
 
typedef CSerialObject CResidue_graph_pntr_Base::Tparent
 
typedef CResidue_graph_id CResidue_graph_pntr_Base::TLocal
 
typedef CBiostruc_graph_pntr CResidue_graph_pntr_Base::TBiostruc
 
typedef CBiostruc_residue_graph_set_pntr CResidue_graph_pntr_Base::TStandard
 
typedef CResidue_id_Base CResidue_id::Tparent
 
typedef CStdAliasBase< intCResidue_id_Base::Tparent
 

Enumerations

enum  CAtom_Base::EElement {
  CAtom_Base::eElement_h = 1 , CAtom_Base::eElement_he = 2 , CAtom_Base::eElement_li = 3 , CAtom_Base::eElement_be = 4 ,
  CAtom_Base::eElement_b = 5 , CAtom_Base::eElement_c = 6 , CAtom_Base::eElement_n = 7 , CAtom_Base::eElement_o = 8 ,
  CAtom_Base::eElement_f = 9 , CAtom_Base::eElement_ne = 10 , CAtom_Base::eElement_na = 11 , CAtom_Base::eElement_mg = 12 ,
  CAtom_Base::eElement_al = 13 , CAtom_Base::eElement_si = 14 , CAtom_Base::eElement_p = 15 , CAtom_Base::eElement_s = 16 ,
  CAtom_Base::eElement_cl = 17 , CAtom_Base::eElement_ar = 18 , CAtom_Base::eElement_k = 19 , CAtom_Base::eElement_ca = 20 ,
  CAtom_Base::eElement_sc = 21 , CAtom_Base::eElement_ti = 22 , CAtom_Base::eElement_v = 23 , CAtom_Base::eElement_cr = 24 ,
  CAtom_Base::eElement_mn = 25 , CAtom_Base::eElement_fe = 26 , CAtom_Base::eElement_co = 27 , CAtom_Base::eElement_ni = 28 ,
  CAtom_Base::eElement_cu = 29 , CAtom_Base::eElement_zn = 30 , CAtom_Base::eElement_ga = 31 , CAtom_Base::eElement_ge = 32 ,
  CAtom_Base::eElement_as = 33 , CAtom_Base::eElement_se = 34 , CAtom_Base::eElement_br = 35 , CAtom_Base::eElement_kr = 36 ,
  CAtom_Base::eElement_rb = 37 , CAtom_Base::eElement_sr = 38 , CAtom_Base::eElement_y = 39 , CAtom_Base::eElement_zr = 40 ,
  CAtom_Base::eElement_nb = 41 , CAtom_Base::eElement_mo = 42 , CAtom_Base::eElement_tc = 43 , CAtom_Base::eElement_ru = 44 ,
  CAtom_Base::eElement_rh = 45 , CAtom_Base::eElement_pd = 46 , CAtom_Base::eElement_ag = 47 , CAtom_Base::eElement_cd = 48 ,
  CAtom_Base::eElement_in = 49 , CAtom_Base::eElement_sn = 50 , CAtom_Base::eElement_sb = 51 , CAtom_Base::eElement_te = 52 ,
  CAtom_Base::eElement_i = 53 , CAtom_Base::eElement_xe = 54 , CAtom_Base::eElement_cs = 55 , CAtom_Base::eElement_ba = 56 ,
  CAtom_Base::eElement_la = 57 , CAtom_Base::eElement_ce = 58 , CAtom_Base::eElement_pr = 59 , CAtom_Base::eElement_nd = 60 ,
  CAtom_Base::eElement_pm = 61 , CAtom_Base::eElement_sm = 62 , CAtom_Base::eElement_eu = 63 , CAtom_Base::eElement_gd = 64 ,
  CAtom_Base::eElement_tb = 65 , CAtom_Base::eElement_dy = 66 , CAtom_Base::eElement_ho = 67 , CAtom_Base::eElement_er = 68 ,
  CAtom_Base::eElement_tm = 69 , CAtom_Base::eElement_yb = 70 , CAtom_Base::eElement_lu = 71 , CAtom_Base::eElement_hf = 72 ,
  CAtom_Base::eElement_ta = 73 , CAtom_Base::eElement_w = 74 , CAtom_Base::eElement_re = 75 , CAtom_Base::eElement_os = 76 ,
  CAtom_Base::eElement_ir = 77 , CAtom_Base::eElement_pt = 78 , CAtom_Base::eElement_au = 79 , CAtom_Base::eElement_hg = 80 ,
  CAtom_Base::eElement_tl = 81 , CAtom_Base::eElement_pb = 82 , CAtom_Base::eElement_bi = 83 , CAtom_Base::eElement_po = 84 ,
  CAtom_Base::eElement_at = 85 , CAtom_Base::eElement_rn = 86 , CAtom_Base::eElement_fr = 87 , CAtom_Base::eElement_ra = 88 ,
  CAtom_Base::eElement_ac = 89 , CAtom_Base::eElement_th = 90 , CAtom_Base::eElement_pa = 91 , CAtom_Base::eElement_u = 92 ,
  CAtom_Base::eElement_np = 93 , CAtom_Base::eElement_pu = 94 , CAtom_Base::eElement_am = 95 , CAtom_Base::eElement_cm = 96 ,
  CAtom_Base::eElement_bk = 97 , CAtom_Base::eElement_cf = 98 , CAtom_Base::eElement_es = 99 , CAtom_Base::eElement_fm = 100 ,
  CAtom_Base::eElement_md = 101 , CAtom_Base::eElement_no = 102 , CAtom_Base::eElement_lr = 103 , CAtom_Base::eElement_other = 254 ,
  CAtom_Base::eElement_unknown = 255
}
 
enum  CAtom_Base::EIonizable_proton { CAtom_Base::eIonizable_proton_true = 1 , CAtom_Base::eIonizable_proton_false = 2 , CAtom_Base::eIonizable_proton_unknown = 255 }
 
enum class  CAtom_Base::E_memberIndex {
  CAtom_Base::e__allMandatory = 0 , CAtom_Base::e_id , CAtom_Base::e_name , CAtom_Base::e_iupac_code ,
  CAtom_Base::e_element , CAtom_Base::e_ionizable_proton
}
 
enum class  CAtom_pntr_Base::E_memberIndex { CAtom_pntr_Base::e__allMandatory = 0 , CAtom_pntr_Base::e_molecule_id , CAtom_pntr_Base::e_residue_id , CAtom_pntr_Base::e_atom_id }
 
enum  CBiomol_descr_Base::EAssembly_type { CBiomol_descr_Base::eAssembly_type_physiological_form = 1 , CBiomol_descr_Base::eAssembly_type_crystallographic_cell = 2 , CBiomol_descr_Base::eAssembly_type_other = 255 }
 
enum  CBiomol_descr_Base::EMolecule_type {
  CBiomol_descr_Base::eMolecule_type_dna = 1 , CBiomol_descr_Base::eMolecule_type_rna = 2 , CBiomol_descr_Base::eMolecule_type_protein = 3 , CBiomol_descr_Base::eMolecule_type_other_biopolymer = 4 ,
  CBiomol_descr_Base::eMolecule_type_solvent = 5 , CBiomol_descr_Base::eMolecule_type_other_nonpolymer = 6 , CBiomol_descr_Base::eMolecule_type_other = 255
}
 
enum  CBiomol_descr_Base::E_Choice {
  CBiomol_descr_Base::e_not_set = 0 , CBiomol_descr_Base::e_Name , CBiomol_descr_Base::e_Pdb_class , CBiomol_descr_Base::e_Pdb_source ,
  CBiomol_descr_Base::e_Pdb_comment , CBiomol_descr_Base::e_Other_comment , CBiomol_descr_Base::e_Organism , CBiomol_descr_Base::e_Attribution ,
  CBiomol_descr_Base::e_Assembly_type , CBiomol_descr_Base::e_Molecule_type
}
 Choice variants. More...
 
enum  CBiomol_descr_Base::E_ChoiceStopper { CBiomol_descr_Base::e_MaxChoice = 10 }
 Maximum+1 value of the choice variant enumerator. More...
 
enum class  CBiostruc_residue_graph_set_pntr_Base::E_memberIndex { CBiostruc_residue_graph_set_pntr_Base::e__allMandatory = 0 , CBiostruc_residue_graph_set_pntr_Base::e_biostruc_residue_graph_set_id , CBiostruc_residue_graph_set_pntr_Base::e_residue_graph_id }
 
enum class  CBiostruc_graph_Base::E_memberIndex {
  CBiostruc_graph_Base::e__allMandatory = 0 , CBiostruc_graph_Base::e_descr , CBiostruc_graph_Base::e_molecule_graphs , CBiostruc_graph_Base::e_inter_molecule_bonds ,
  CBiostruc_graph_Base::e_residue_graphs
}
 
enum class  CBiostruc_graph_pntr_Base::E_memberIndex { CBiostruc_graph_pntr_Base::e__allMandatory = 0 , CBiostruc_graph_pntr_Base::e_biostruc_id , CBiostruc_graph_pntr_Base::e_residue_graph_id }
 
enum  CChiral_center_Base::ESign { CChiral_center_Base::eSign_positive = 1 , CChiral_center_Base::eSign_negative = 2 }
 
enum class  CChiral_center_Base::E_memberIndex {
  CChiral_center_Base::e__allMandatory = 0 , CChiral_center_Base::e_c , CChiral_center_Base::e_n1 , CChiral_center_Base::e_n2 ,
  CChiral_center_Base::e_n3 , CChiral_center_Base::e_sign
}
 
enum  CInter_residue_bond_Base::EBond_order {
  CInter_residue_bond_Base::eBond_order_single = 1 , CInter_residue_bond_Base::eBond_order_partial_double = 2 , CInter_residue_bond_Base::eBond_order_aromatic = 3 , CInter_residue_bond_Base::eBond_order_double = 4 ,
  CInter_residue_bond_Base::eBond_order_triple = 5 , CInter_residue_bond_Base::eBond_order_other = 6 , CInter_residue_bond_Base::eBond_order_unknown = 255
}
 
enum class  CInter_residue_bond_Base::E_memberIndex { CInter_residue_bond_Base::e__allMandatory = 0 , CInter_residue_bond_Base::e_atom_id_1 , CInter_residue_bond_Base::e_atom_id_2 , CInter_residue_bond_Base::e_bond_order }
 
enum  CIntra_residue_bond_Base::EBond_order {
  CIntra_residue_bond_Base::eBond_order_single = 1 , CIntra_residue_bond_Base::eBond_order_partial_double = 2 , CIntra_residue_bond_Base::eBond_order_aromatic = 3 , CIntra_residue_bond_Base::eBond_order_double = 4 ,
  CIntra_residue_bond_Base::eBond_order_triple = 5 , CIntra_residue_bond_Base::eBond_order_other = 6 , CIntra_residue_bond_Base::eBond_order_unknown = 255
}
 
enum class  CIntra_residue_bond_Base::E_memberIndex { CIntra_residue_bond_Base::e__allMandatory = 0 , CIntra_residue_bond_Base::e_atom_id_1 , CIntra_residue_bond_Base::e_atom_id_2 , CIntra_residue_bond_Base::e_bond_order }
 
enum class  CMolecule_graph_Base::E_memberIndex {
  CMolecule_graph_Base::e__allMandatory = 0 , CMolecule_graph_Base::e_id , CMolecule_graph_Base::e_descr , CMolecule_graph_Base::e_seq_id ,
  CMolecule_graph_Base::e_residue_sequence , CMolecule_graph_Base::e_inter_residue_bonds , CMolecule_graph_Base::e_sid
}
 
enum class  CResidue_Base::E_memberIndex { CResidue_Base::e__allMandatory = 0 , CResidue_Base::e_id , CResidue_Base::e_name , CResidue_Base::e_residue_graph }
 
enum  CResidue_graph_Base::EResidue_type { CResidue_graph_Base::eResidue_type_deoxyribonucleotide = 1 , CResidue_graph_Base::eResidue_type_ribonucleotide = 2 , CResidue_graph_Base::eResidue_type_amino_acid = 3 , CResidue_graph_Base::eResidue_type_other = 255 }
 
enum class  CResidue_graph_Base::E_memberIndex {
  CResidue_graph_Base::e__allMandatory = 0 , CResidue_graph_Base::e_id , CResidue_graph_Base::e_descr , CResidue_graph_Base::e_residue_type ,
  CResidue_graph_Base::e_iupac_code , CResidue_graph_Base::e_atoms , CResidue_graph_Base::e_bonds , CResidue_graph_Base::e_chiral_centers
}
 
enum  CResidue_graph_pntr_Base::E_Choice { CResidue_graph_pntr_Base::e_not_set = 0 , CResidue_graph_pntr_Base::e_Local , CResidue_graph_pntr_Base::e_Biostruc , CResidue_graph_pntr_Base::e_Standard }
 Choice variants. More...
 
enum  CResidue_graph_pntr_Base::E_ChoiceStopper { CResidue_graph_pntr_Base::e_MaxChoice = 4 }
 Maximum+1 value of the choice variant enumerator. More...
 

Functions

 CAtom::CAtom (void)
 
 CAtom::~CAtom (void)
 
 CAtom::CAtom (const CAtom &value)
 
CAtomCAtom::operator= (const CAtom &value)
 
 CAtom_Base::CAtom_Base (void)
 
virtual CAtom_Base::~CAtom_Base (void)
 
 CAtom_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CAtom_Base::EElement (void)
 Access to EElement's attributes (values, names) as defined in spec. More...
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CAtom_Base::EIonizable_proton (void)
 Access to EIonizable_proton's attributes (values, names) as defined in spec. More...
 
bool CAtom_Base::IsSetId (void) const
 Check if a value has been assigned to Id data member. More...
 
bool CAtom_Base::CanGetId (void) const
 Check if it is safe to call GetId method. More...
 
void CAtom_Base::ResetId (void)
 Reset Id data member. More...
 
const TIdCAtom_Base::GetId (void) const
 Get the Id member data. More...
 
void CAtom_Base::SetId (const TId &value)
 Assign a value to Id data member. More...
 
TIdCAtom_Base::SetId (void)
 Assign a value to Id data member. More...
 
bool CAtom_Base::IsSetName (void) const
 Check if a value has been assigned to Name data member. More...
 
bool CAtom_Base::CanGetName (void) const
 Check if it is safe to call GetName method. More...
 
void CAtom_Base::ResetName (void)
 Reset Name data member. More...
 
const TNameCAtom_Base::GetName (void) const
 Get the Name member data. More...
 
void CAtom_Base::SetName (const TName &value)
 Assign a value to Name data member. More...
 
void CAtom_Base::SetName (TName &&value)
 
TNameCAtom_Base::SetName (void)
 Assign a value to Name data member. More...
 
bool CAtom_Base::IsSetIupac_code (void) const
 Check if a value has been assigned to Iupac_code data member. More...
 
bool CAtom_Base::CanGetIupac_code (void) const
 Check if it is safe to call GetIupac_code method. More...
 
void CAtom_Base::ResetIupac_code (void)
 Reset Iupac_code data member. More...
 
const TIupac_codeCAtom_Base::GetIupac_code (void) const
 Get the Iupac_code member data. More...
 
TIupac_codeCAtom_Base::SetIupac_code (void)
 Assign a value to Iupac_code data member. More...
 
bool CAtom_Base::IsSetElement (void) const
 Check if a value has been assigned to Element data member. More...
 
bool CAtom_Base::CanGetElement (void) const
 Check if it is safe to call GetElement method. More...
 
void CAtom_Base::ResetElement (void)
 Reset Element data member. More...
 
TElement CAtom_Base::GetElement (void) const
 Get the Element member data. More...
 
void CAtom_Base::SetElement (TElement value)
 Assign a value to Element data member. More...
 
TElementCAtom_Base::SetElement (void)
 Assign a value to Element data member. More...
 
bool CAtom_Base::IsSetIonizable_proton (void) const
 Check if a value has been assigned to Ionizable_proton data member. More...
 
bool CAtom_Base::CanGetIonizable_proton (void) const
 Check if it is safe to call GetIonizable_proton method. More...
 
void CAtom_Base::ResetIonizable_proton (void)
 Reset Ionizable_proton data member. More...
 
TIonizable_proton CAtom_Base::GetIonizable_proton (void) const
 Get the Ionizable_proton member data. More...
 
void CAtom_Base::SetIonizable_proton (TIonizable_proton value)
 Assign a value to Ionizable_proton data member. More...
 
TIonizable_protonCAtom_Base::SetIonizable_proton (void)
 Assign a value to Ionizable_proton data member. More...
 
virtual void CAtom_Base::Reset (void)
 Reset the whole object. More...
 
 CAtom_Base::CAtom_Base (const CAtom_Base &)
 
CAtom_BaseCAtom_Base::operator= (const CAtom_Base &)
 
 CAtom_id::CAtom_id (void)
 
 CAtom_id::CAtom_id (const int &value)
 Explicit constructor from the primitive type. More...
 
 CAtom_id_Base::CAtom_id_Base (void)
 
 CAtom_id_Base::DECLARE_STD_ALIAS_TYPE_INFO ()
 
 CAtom_id_Base::CAtom_id_Base (const int &data)
 
NCBI_NS_NCBI::CNcbiOstreamoperator<< (NCBI_NS_NCBI::CNcbiOstream &str, const CAtom_id_Base &obj)
 
NCBI_NS_NCBI::CNcbiIstreamoperator>> (NCBI_NS_NCBI::CNcbiIstream &str, CAtom_id_Base &obj)
 
 CAtom_pntr::CAtom_pntr (void)
 
 CAtom_pntr::~CAtom_pntr (void)
 
 CAtom_pntr::CAtom_pntr (const CAtom_pntr &value)
 
CAtom_pntrCAtom_pntr::operator= (const CAtom_pntr &value)
 
 CAtom_pntr_Base::CAtom_pntr_Base (void)
 
virtual CAtom_pntr_Base::~CAtom_pntr_Base (void)
 
 CAtom_pntr_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CAtom_pntr_Base::IsSetMolecule_id (void) const
 Check if a value has been assigned to Molecule_id data member. More...
 
bool CAtom_pntr_Base::CanGetMolecule_id (void) const
 Check if it is safe to call GetMolecule_id method. More...
 
void CAtom_pntr_Base::ResetMolecule_id (void)
 Reset Molecule_id data member. More...
 
const TMolecule_idCAtom_pntr_Base::GetMolecule_id (void) const
 Get the Molecule_id member data. More...
 
void CAtom_pntr_Base::SetMolecule_id (const TMolecule_id &value)
 Assign a value to Molecule_id data member. More...
 
TMolecule_idCAtom_pntr_Base::SetMolecule_id (void)
 Assign a value to Molecule_id data member. More...
 
bool CAtom_pntr_Base::IsSetResidue_id (void) const
 Check if a value has been assigned to Residue_id data member. More...
 
bool CAtom_pntr_Base::CanGetResidue_id (void) const
 Check if it is safe to call GetResidue_id method. More...
 
void CAtom_pntr_Base::ResetResidue_id (void)
 Reset Residue_id data member. More...
 
const TResidue_idCAtom_pntr_Base::GetResidue_id (void) const
 Get the Residue_id member data. More...
 
void CAtom_pntr_Base::SetResidue_id (const TResidue_id &value)
 Assign a value to Residue_id data member. More...
 
TResidue_idCAtom_pntr_Base::SetResidue_id (void)
 Assign a value to Residue_id data member. More...
 
bool CAtom_pntr_Base::IsSetAtom_id (void) const
 Check if a value has been assigned to Atom_id data member. More...
 
bool CAtom_pntr_Base::CanGetAtom_id (void) const
 Check if it is safe to call GetAtom_id method. More...
 
void CAtom_pntr_Base::ResetAtom_id (void)
 Reset Atom_id data member. More...
 
const TAtom_idCAtom_pntr_Base::GetAtom_id (void) const
 Get the Atom_id member data. More...
 
void CAtom_pntr_Base::SetAtom_id (const TAtom_id &value)
 Assign a value to Atom_id data member. More...
 
TAtom_idCAtom_pntr_Base::SetAtom_id (void)
 Assign a value to Atom_id data member. More...
 
virtual void CAtom_pntr_Base::Reset (void)
 Reset the whole object. More...
 
 CAtom_pntr_Base::CAtom_pntr_Base (const CAtom_pntr_Base &)
 
CAtom_pntr_BaseCAtom_pntr_Base::operator= (const CAtom_pntr_Base &)
 
 CAtom_pntr_set::CAtom_pntr_set (void)
 
 CAtom_pntr_set::~CAtom_pntr_set (void)
 
 CAtom_pntr_set::CAtom_pntr_set (const CAtom_pntr_set &value)
 
CAtom_pntr_setCAtom_pntr_set::operator= (const CAtom_pntr_set &value)
 
 CAtom_pntr_set_Base::CAtom_pntr_set_Base (void)
 
virtual CAtom_pntr_set_Base::~CAtom_pntr_set_Base (void)
 
 CAtom_pntr_set_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CAtom_pntr_set_Base::IsSet (void) const
 Check if a value has been assigned to data member. More...
 
bool CAtom_pntr_set_Base::CanGet (void) const
 Check if it is safe to call Get method. More...
 
void CAtom_pntr_set_Base::Reset (void)
 Reset data member. More...
 
const TdataCAtom_pntr_set_Base::Get (void) const
 Get the member data. More...
 
TdataCAtom_pntr_set_Base::Set (void)
 Assign a value to data member. More...
 
 CAtom_pntr_set_Base::operator const Tdata & (void) const
 Conversion operator to 'const Tdata' type. More...
 
 CAtom_pntr_set_Base::operator Tdata & (void)
 Conversion operator to 'Tdata' type. More...
 
 CAtom_pntr_set_Base::CAtom_pntr_set_Base (const CAtom_pntr_set_Base &)
 
CAtom_pntr_set_BaseCAtom_pntr_set_Base::operator= (const CAtom_pntr_set_Base &)
 
 CBiomol_descr::CBiomol_descr (void)
 
 CBiomol_descr::~CBiomol_descr (void)
 
 CBiomol_descr::CBiomol_descr (const CBiomol_descr &value)
 
CBiomol_descrCBiomol_descr::operator= (const CBiomol_descr &value)
 
 CBiomol_descr_Base::CBiomol_descr_Base (void)
 
virtual CBiomol_descr_Base::~CBiomol_descr_Base (void)
 
 CBiomol_descr_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CBiomol_descr_Base::EAssembly_type (void)
 Access to EAssembly_type's attributes (values, names) as defined in spec. More...
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CBiomol_descr_Base::EMolecule_type (void)
 Access to EMolecule_type's attributes (values, names) as defined in spec. More...
 
virtual void CBiomol_descr_Base::Reset (void)
 Reset the whole object. More...
 
virtual void CBiomol_descr_Base::ResetSelection (void)
 Reset the selection (set it to e_not_set). More...
 
E_Choice CBiomol_descr_Base::Which (void) const
 Which variant is currently selected. More...
 
void CBiomol_descr_Base::CheckSelected (E_Choice index) const
 Verify selection, throw exception if it differs from the expected. More...
 
void CBiomol_descr_Base::ThrowInvalidSelection (E_Choice index) const
 Throw 'InvalidSelection' exception. More...
 
static string CBiomol_descr_Base::SelectionName (E_Choice index)
 Retrieve selection name (for diagnostic purposes). More...
 
void CBiomol_descr_Base::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
 Select the requested variant if needed. More...
 
void CBiomol_descr_Base::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
 Select the requested variant if needed, allocating CObject variants from memory pool. More...
 
bool CBiomol_descr_Base::IsName (void) const
 Check if variant Name is selected. More...
 
const TNameCBiomol_descr_Base::GetName (void) const
 Get the variant data. More...
 
TNameCBiomol_descr_Base::SetName (void)
 Select the variant. More...
 
void CBiomol_descr_Base::SetName (const TName &value)
 Select the variant and set its data. More...
 
bool CBiomol_descr_Base::IsPdb_class (void) const
 Check if variant Pdb_class is selected. More...
 
const TPdb_classCBiomol_descr_Base::GetPdb_class (void) const
 Get the variant data. More...
 
TPdb_classCBiomol_descr_Base::SetPdb_class (void)
 Select the variant. More...
 
void CBiomol_descr_Base::SetPdb_class (const TPdb_class &value)
 Select the variant and set its data. More...
 
bool CBiomol_descr_Base::IsPdb_source (void) const
 Check if variant Pdb_source is selected. More...
 
const TPdb_sourceCBiomol_descr_Base::GetPdb_source (void) const
 Get the variant data. More...
 
TPdb_sourceCBiomol_descr_Base::SetPdb_source (void)
 Select the variant. More...
 
void CBiomol_descr_Base::SetPdb_source (const TPdb_source &value)
 Select the variant and set its data. More...
 
bool CBiomol_descr_Base::IsPdb_comment (void) const
 Check if variant Pdb_comment is selected. More...
 
const TPdb_commentCBiomol_descr_Base::GetPdb_comment (void) const
 Get the variant data. More...
 
TPdb_commentCBiomol_descr_Base::SetPdb_comment (void)
 Select the variant. More...
 
void CBiomol_descr_Base::SetPdb_comment (const TPdb_comment &value)
 Select the variant and set its data. More...
 
bool CBiomol_descr_Base::IsOther_comment (void) const
 Check if variant Other_comment is selected. More...
 
const TOther_commentCBiomol_descr_Base::GetOther_comment (void) const
 Get the variant data. More...
 
TOther_commentCBiomol_descr_Base::SetOther_comment (void)
 Select the variant. More...
 
void CBiomol_descr_Base::SetOther_comment (const TOther_comment &value)
 Select the variant and set its data. More...
 
bool CBiomol_descr_Base::IsOrganism (void) const
 Check if variant Organism is selected. More...
 
const TOrganismCBiomol_descr_Base::GetOrganism (void) const
 Get the variant data. More...
 
TOrganismCBiomol_descr_Base::SetOrganism (void)
 Select the variant. More...
 
void CBiomol_descr_Base::SetOrganism (TOrganism &value)
 Select the variant and set its data. More...
 
bool CBiomol_descr_Base::IsAttribution (void) const
 Check if variant Attribution is selected. More...
 
const TAttributionCBiomol_descr_Base::GetAttribution (void) const
 Get the variant data. More...
 
TAttributionCBiomol_descr_Base::SetAttribution (void)
 Select the variant. More...
 
void CBiomol_descr_Base::SetAttribution (TAttribution &value)
 Select the variant and set its data. More...
 
bool CBiomol_descr_Base::IsAssembly_type (void) const
 Check if variant Assembly_type is selected. More...
 
TAssembly_type CBiomol_descr_Base::GetAssembly_type (void) const
 Get the variant data. More...
 
TAssembly_typeCBiomol_descr_Base::SetAssembly_type (void)
 Select the variant. More...
 
void CBiomol_descr_Base::SetAssembly_type (TAssembly_type value)
 Select the variant and set its data. More...
 
bool CBiomol_descr_Base::IsMolecule_type (void) const
 Check if variant Molecule_type is selected. More...
 
TMolecule_type CBiomol_descr_Base::GetMolecule_type (void) const
 Get the variant data. More...
 
TMolecule_typeCBiomol_descr_Base::SetMolecule_type (void)
 Select the variant. More...
 
void CBiomol_descr_Base::SetMolecule_type (TMolecule_type value)
 Select the variant and set its data. More...
 
 CBiomol_descr_Base::CBiomol_descr_Base (const CBiomol_descr_Base &)
 
CBiomol_descr_BaseCBiomol_descr_Base::operator= (const CBiomol_descr_Base &)
 
void CBiomol_descr_Base::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
 
 CBiostruc_residue_graph_set_pntr::CBiostruc_residue_graph_set_pntr (void)
 
 CBiostruc_residue_graph_set_pntr::~CBiostruc_residue_graph_set_pntr (void)
 
 CBiostruc_residue_graph_set_pntr::CBiostruc_residue_graph_set_pntr (const CBiostruc_residue_graph_set_pntr &value)
 
CBiostruc_residue_graph_set_pntrCBiostruc_residue_graph_set_pntr::operator= (const CBiostruc_residue_graph_set_pntr &value)
 
 CBiostruc_residue_graph_set_pntr_Base::CBiostruc_residue_graph_set_pntr_Base (void)
 
virtual CBiostruc_residue_graph_set_pntr_Base::~CBiostruc_residue_graph_set_pntr_Base (void)
 
 CBiostruc_residue_graph_set_pntr_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CBiostruc_residue_graph_set_pntr_Base::IsSetBiostruc_residue_graph_set_id (void) const
 Check if a value has been assigned to Biostruc_residue_graph_set_id data member. More...
 
bool CBiostruc_residue_graph_set_pntr_Base::CanGetBiostruc_residue_graph_set_id (void) const
 Check if it is safe to call GetBiostruc_residue_graph_set_id method. More...
 
void CBiostruc_residue_graph_set_pntr_Base::ResetBiostruc_residue_graph_set_id (void)
 Reset Biostruc_residue_graph_set_id data member. More...
 
const TBiostruc_residue_graph_set_idCBiostruc_residue_graph_set_pntr_Base::GetBiostruc_residue_graph_set_id (void) const
 Get the Biostruc_residue_graph_set_id member data. More...
 
void CBiostruc_residue_graph_set_pntr_Base::SetBiostruc_residue_graph_set_id (TBiostruc_residue_graph_set_id &value)
 Assign a value to Biostruc_residue_graph_set_id data member. More...
 
TBiostruc_residue_graph_set_idCBiostruc_residue_graph_set_pntr_Base::SetBiostruc_residue_graph_set_id (void)
 Assign a value to Biostruc_residue_graph_set_id data member. More...
 
bool CBiostruc_residue_graph_set_pntr_Base::IsSetResidue_graph_id (void) const
 Check if a value has been assigned to Residue_graph_id data member. More...
 
bool CBiostruc_residue_graph_set_pntr_Base::CanGetResidue_graph_id (void) const
 Check if it is safe to call GetResidue_graph_id method. More...
 
void CBiostruc_residue_graph_set_pntr_Base::ResetResidue_graph_id (void)
 Reset Residue_graph_id data member. More...
 
const TResidue_graph_idCBiostruc_residue_graph_set_pntr_Base::GetResidue_graph_id (void) const
 Get the Residue_graph_id member data. More...
 
void CBiostruc_residue_graph_set_pntr_Base::SetResidue_graph_id (const TResidue_graph_id &value)
 Assign a value to Residue_graph_id data member. More...
 
TResidue_graph_idCBiostruc_residue_graph_set_pntr_Base::SetResidue_graph_id (void)
 Assign a value to Residue_graph_id data member. More...
 
virtual void CBiostruc_residue_graph_set_pntr_Base::Reset (void)
 Reset the whole object. More...
 
 CBiostruc_residue_graph_set_pntr_Base::CBiostruc_residue_graph_set_pntr_Base (const CBiostruc_residue_graph_set_pntr_Base &)
 
CBiostruc_residue_graph_set_pntr_BaseCBiostruc_residue_graph_set_pntr_Base::operator= (const CBiostruc_residue_graph_set_pntr_Base &)
 
 CBiostruc_graph::CBiostruc_graph (void)
 
 CBiostruc_graph::~CBiostruc_graph (void)
 
 CBiostruc_graph::CBiostruc_graph (const CBiostruc_graph &value)
 
CBiostruc_graphCBiostruc_graph::operator= (const CBiostruc_graph &value)
 
 CBiostruc_graph_Base::CBiostruc_graph_Base (void)
 
virtual CBiostruc_graph_Base::~CBiostruc_graph_Base (void)
 
 CBiostruc_graph_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CBiostruc_graph_Base::IsSetDescr (void) const
 Check if a value has been assigned to Descr data member. More...
 
bool CBiostruc_graph_Base::CanGetDescr (void) const
 Check if it is safe to call GetDescr method. More...
 
void CBiostruc_graph_Base::ResetDescr (void)
 Reset Descr data member. More...
 
const TDescrCBiostruc_graph_Base::GetDescr (void) const
 Get the Descr member data. More...
 
TDescrCBiostruc_graph_Base::SetDescr (void)
 Assign a value to Descr data member. More...
 
bool CBiostruc_graph_Base::IsSetMolecule_graphs (void) const
 Check if a value has been assigned to Molecule_graphs data member. More...
 
bool CBiostruc_graph_Base::CanGetMolecule_graphs (void) const
 Check if it is safe to call GetMolecule_graphs method. More...
 
void CBiostruc_graph_Base::ResetMolecule_graphs (void)
 Reset Molecule_graphs data member. More...
 
const TMolecule_graphsCBiostruc_graph_Base::GetMolecule_graphs (void) const
 Get the Molecule_graphs member data. More...
 
TMolecule_graphsCBiostruc_graph_Base::SetMolecule_graphs (void)
 Assign a value to Molecule_graphs data member. More...
 
bool CBiostruc_graph_Base::IsSetInter_molecule_bonds (void) const
 Check if a value has been assigned to Inter_molecule_bonds data member. More...
 
bool CBiostruc_graph_Base::CanGetInter_molecule_bonds (void) const
 Check if it is safe to call GetInter_molecule_bonds method. More...
 
void CBiostruc_graph_Base::ResetInter_molecule_bonds (void)
 Reset Inter_molecule_bonds data member. More...
 
const TInter_molecule_bondsCBiostruc_graph_Base::GetInter_molecule_bonds (void) const
 Get the Inter_molecule_bonds member data. More...
 
TInter_molecule_bondsCBiostruc_graph_Base::SetInter_molecule_bonds (void)
 Assign a value to Inter_molecule_bonds data member. More...
 
bool CBiostruc_graph_Base::IsSetResidue_graphs (void) const
 Check if a value has been assigned to Residue_graphs data member. More...
 
bool CBiostruc_graph_Base::CanGetResidue_graphs (void) const
 Check if it is safe to call GetResidue_graphs method. More...
 
void CBiostruc_graph_Base::ResetResidue_graphs (void)
 Reset Residue_graphs data member. More...
 
const TResidue_graphsCBiostruc_graph_Base::GetResidue_graphs (void) const
 Get the Residue_graphs member data. More...
 
TResidue_graphsCBiostruc_graph_Base::SetResidue_graphs (void)
 Assign a value to Residue_graphs data member. More...
 
virtual void CBiostruc_graph_Base::Reset (void)
 Reset the whole object. More...
 
 CBiostruc_graph_Base::CBiostruc_graph_Base (const CBiostruc_graph_Base &)
 
CBiostruc_graph_BaseCBiostruc_graph_Base::operator= (const CBiostruc_graph_Base &)
 
 CBiostruc_graph_pntr::CBiostruc_graph_pntr (void)
 
 CBiostruc_graph_pntr::~CBiostruc_graph_pntr (void)
 
 CBiostruc_graph_pntr::CBiostruc_graph_pntr (const CBiostruc_graph_pntr &value)
 
CBiostruc_graph_pntrCBiostruc_graph_pntr::operator= (const CBiostruc_graph_pntr &value)
 
 CBiostruc_graph_pntr_Base::CBiostruc_graph_pntr_Base (void)
 
virtual CBiostruc_graph_pntr_Base::~CBiostruc_graph_pntr_Base (void)
 
 CBiostruc_graph_pntr_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CBiostruc_graph_pntr_Base::IsSetBiostruc_id (void) const
 Check if a value has been assigned to Biostruc_id data member. More...
 
bool CBiostruc_graph_pntr_Base::CanGetBiostruc_id (void) const
 Check if it is safe to call GetBiostruc_id method. More...
 
void CBiostruc_graph_pntr_Base::ResetBiostruc_id (void)
 Reset Biostruc_id data member. More...
 
const TBiostruc_idCBiostruc_graph_pntr_Base::GetBiostruc_id (void) const
 Get the Biostruc_id member data. More...
 
void CBiostruc_graph_pntr_Base::SetBiostruc_id (TBiostruc_id &value)
 Assign a value to Biostruc_id data member. More...
 
TBiostruc_idCBiostruc_graph_pntr_Base::SetBiostruc_id (void)
 Assign a value to Biostruc_id data member. More...
 
bool CBiostruc_graph_pntr_Base::IsSetResidue_graph_id (void) const
 Check if a value has been assigned to Residue_graph_id data member. More...
 
bool CBiostruc_graph_pntr_Base::CanGetResidue_graph_id (void) const
 Check if it is safe to call GetResidue_graph_id method. More...
 
void CBiostruc_graph_pntr_Base::ResetResidue_graph_id (void)
 Reset Residue_graph_id data member. More...
 
const TResidue_graph_idCBiostruc_graph_pntr_Base::GetResidue_graph_id (void) const
 Get the Residue_graph_id member data. More...
 
void CBiostruc_graph_pntr_Base::SetResidue_graph_id (const TResidue_graph_id &value)
 Assign a value to Residue_graph_id data member. More...
 
TResidue_graph_idCBiostruc_graph_pntr_Base::SetResidue_graph_id (void)
 Assign a value to Residue_graph_id data member. More...
 
virtual void CBiostruc_graph_pntr_Base::Reset (void)
 Reset the whole object. More...
 
 CBiostruc_graph_pntr_Base::CBiostruc_graph_pntr_Base (const CBiostruc_graph_pntr_Base &)
 
CBiostruc_graph_pntr_BaseCBiostruc_graph_pntr_Base::operator= (const CBiostruc_graph_pntr_Base &)
 
 CChiral_center::CChiral_center (void)
 
 CChiral_center::~CChiral_center (void)
 
 CChiral_center::CChiral_center (const CChiral_center &value)
 
CChiral_centerCChiral_center::operator= (const CChiral_center &value)
 
 CChiral_center_Base::CChiral_center_Base (void)
 
virtual CChiral_center_Base::~CChiral_center_Base (void)
 
 CChiral_center_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CChiral_center_Base::ESign (void)
 Access to ESign's attributes (values, names) as defined in spec. More...
 
bool CChiral_center_Base::IsSetC (void) const
 Check if a value has been assigned to C data member. More...
 
bool CChiral_center_Base::CanGetC (void) const
 Check if it is safe to call GetC method. More...
 
void CChiral_center_Base::ResetC (void)
 Reset C data member. More...
 
const TCCChiral_center_Base::GetC (void) const
 Get the C member data. More...
 
void CChiral_center_Base::SetC (const TC &value)
 Assign a value to C data member. More...
 
TCCChiral_center_Base::SetC (void)
 Assign a value to C data member. More...
 
bool CChiral_center_Base::IsSetN1 (void) const
 Check if a value has been assigned to N1 data member. More...
 
bool CChiral_center_Base::CanGetN1 (void) const
 Check if it is safe to call GetN1 method. More...
 
void CChiral_center_Base::ResetN1 (void)
 Reset N1 data member. More...
 
const TN1CChiral_center_Base::GetN1 (void) const
 Get the N1 member data. More...
 
void CChiral_center_Base::SetN1 (const TN1 &value)
 Assign a value to N1 data member. More...
 
TN1CChiral_center_Base::SetN1 (void)
 Assign a value to N1 data member. More...
 
bool CChiral_center_Base::IsSetN2 (void) const
 Check if a value has been assigned to N2 data member. More...
 
bool CChiral_center_Base::CanGetN2 (void) const
 Check if it is safe to call GetN2 method. More...
 
void CChiral_center_Base::ResetN2 (void)
 Reset N2 data member. More...
 
const TN2CChiral_center_Base::GetN2 (void) const
 Get the N2 member data. More...
 
void CChiral_center_Base::SetN2 (const TN2 &value)
 Assign a value to N2 data member. More...
 
TN2CChiral_center_Base::SetN2 (void)
 Assign a value to N2 data member. More...
 
bool CChiral_center_Base::IsSetN3 (void) const
 Check if a value has been assigned to N3 data member. More...
 
bool CChiral_center_Base::CanGetN3 (void) const
 Check if it is safe to call GetN3 method. More...
 
void CChiral_center_Base::ResetN3 (void)
 Reset N3 data member. More...
 
const TN3CChiral_center_Base::GetN3 (void) const
 Get the N3 member data. More...
 
void CChiral_center_Base::SetN3 (const TN3 &value)
 Assign a value to N3 data member. More...
 
TN3CChiral_center_Base::SetN3 (void)
 Assign a value to N3 data member. More...
 
bool CChiral_center_Base::IsSetSign (void) const
 Check if a value has been assigned to Sign data member. More...
 
bool CChiral_center_Base::CanGetSign (void) const
 Check if it is safe to call GetSign method. More...
 
void CChiral_center_Base::ResetSign (void)
 Reset Sign data member. More...
 
TSign CChiral_center_Base::GetSign (void) const
 Get the Sign member data. More...
 
void CChiral_center_Base::SetSign (TSign value)
 Assign a value to Sign data member. More...
 
TSignCChiral_center_Base::SetSign (void)
 Assign a value to Sign data member. More...
 
virtual void CChiral_center_Base::Reset (void)
 Reset the whole object. More...
 
 CChiral_center_Base::CChiral_center_Base (const CChiral_center_Base &)
 
CChiral_center_BaseCChiral_center_Base::operator= (const CChiral_center_Base &)
 
 CInter_residue_bond::CInter_residue_bond (void)
 
 CInter_residue_bond::~CInter_residue_bond (void)
 
 CInter_residue_bond::CInter_residue_bond (const CInter_residue_bond &value)
 
CInter_residue_bondCInter_residue_bond::operator= (const CInter_residue_bond &value)
 
 CInter_residue_bond_Base::CInter_residue_bond_Base (void)
 
virtual CInter_residue_bond_Base::~CInter_residue_bond_Base (void)
 
 CInter_residue_bond_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CInter_residue_bond_Base::EBond_order (void)
 Access to EBond_order's attributes (values, names) as defined in spec. More...
 
bool CInter_residue_bond_Base::IsSetAtom_id_1 (void) const
 Check if a value has been assigned to Atom_id_1 data member. More...
 
bool CInter_residue_bond_Base::CanGetAtom_id_1 (void) const
 Check if it is safe to call GetAtom_id_1 method. More...
 
void CInter_residue_bond_Base::ResetAtom_id_1 (void)
 Reset Atom_id_1 data member. More...
 
const TAtom_id_1CInter_residue_bond_Base::GetAtom_id_1 (void) const
 Get the Atom_id_1 member data. More...
 
void CInter_residue_bond_Base::SetAtom_id_1 (TAtom_id_1 &value)
 Assign a value to Atom_id_1 data member. More...
 
TAtom_id_1CInter_residue_bond_Base::SetAtom_id_1 (void)
 Assign a value to Atom_id_1 data member. More...
 
bool CInter_residue_bond_Base::IsSetAtom_id_2 (void) const
 Check if a value has been assigned to Atom_id_2 data member. More...
 
bool CInter_residue_bond_Base::CanGetAtom_id_2 (void) const
 Check if it is safe to call GetAtom_id_2 method. More...
 
void CInter_residue_bond_Base::ResetAtom_id_2 (void)
 Reset Atom_id_2 data member. More...
 
const TAtom_id_2CInter_residue_bond_Base::GetAtom_id_2 (void) const
 Get the Atom_id_2 member data. More...
 
void CInter_residue_bond_Base::SetAtom_id_2 (TAtom_id_2 &value)
 Assign a value to Atom_id_2 data member. More...
 
TAtom_id_2CInter_residue_bond_Base::SetAtom_id_2 (void)
 Assign a value to Atom_id_2 data member. More...
 
bool CInter_residue_bond_Base::IsSetBond_order (void) const
 Check if a value has been assigned to Bond_order data member. More...
 
bool CInter_residue_bond_Base::CanGetBond_order (void) const
 Check if it is safe to call GetBond_order method. More...
 
void CInter_residue_bond_Base::ResetBond_order (void)
 Reset Bond_order data member. More...
 
TBond_order CInter_residue_bond_Base::GetBond_order (void) const
 Get the Bond_order member data. More...
 
void CInter_residue_bond_Base::SetBond_order (TBond_order value)
 Assign a value to Bond_order data member. More...
 
TBond_orderCInter_residue_bond_Base::SetBond_order (void)
 Assign a value to Bond_order data member. More...
 
virtual void CInter_residue_bond_Base::Reset (void)
 Reset the whole object. More...
 
 CInter_residue_bond_Base::CInter_residue_bond_Base (const CInter_residue_bond_Base &)
 
CInter_residue_bond_BaseCInter_residue_bond_Base::operator= (const CInter_residue_bond_Base &)
 
 CIntra_residue_bond::CIntra_residue_bond (void)
 
 CIntra_residue_bond::~CIntra_residue_bond (void)
 
 CIntra_residue_bond::CIntra_residue_bond (const CIntra_residue_bond &value)
 
CIntra_residue_bondCIntra_residue_bond::operator= (const CIntra_residue_bond &value)
 
 CIntra_residue_bond_Base::CIntra_residue_bond_Base (void)
 
virtual CIntra_residue_bond_Base::~CIntra_residue_bond_Base (void)
 
 CIntra_residue_bond_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CIntra_residue_bond_Base::EBond_order (void)
 Access to EBond_order's attributes (values, names) as defined in spec. More...
 
bool CIntra_residue_bond_Base::IsSetAtom_id_1 (void) const
 Check if a value has been assigned to Atom_id_1 data member. More...
 
bool CIntra_residue_bond_Base::CanGetAtom_id_1 (void) const
 Check if it is safe to call GetAtom_id_1 method. More...
 
void CIntra_residue_bond_Base::ResetAtom_id_1 (void)
 Reset Atom_id_1 data member. More...
 
const TAtom_id_1CIntra_residue_bond_Base::GetAtom_id_1 (void) const
 Get the Atom_id_1 member data. More...
 
void CIntra_residue_bond_Base::SetAtom_id_1 (const TAtom_id_1 &value)
 Assign a value to Atom_id_1 data member. More...
 
TAtom_id_1CIntra_residue_bond_Base::SetAtom_id_1 (void)
 Assign a value to Atom_id_1 data member. More...
 
bool CIntra_residue_bond_Base::IsSetAtom_id_2 (void) const
 Check if a value has been assigned to Atom_id_2 data member. More...
 
bool CIntra_residue_bond_Base::CanGetAtom_id_2 (void) const
 Check if it is safe to call GetAtom_id_2 method. More...
 
void CIntra_residue_bond_Base::ResetAtom_id_2 (void)
 Reset Atom_id_2 data member. More...
 
const TAtom_id_2CIntra_residue_bond_Base::GetAtom_id_2 (void) const
 Get the Atom_id_2 member data. More...
 
void CIntra_residue_bond_Base::SetAtom_id_2 (const TAtom_id_2 &value)
 Assign a value to Atom_id_2 data member. More...
 
TAtom_id_2CIntra_residue_bond_Base::SetAtom_id_2 (void)
 Assign a value to Atom_id_2 data member. More...
 
bool CIntra_residue_bond_Base::IsSetBond_order (void) const
 Check if a value has been assigned to Bond_order data member. More...
 
bool CIntra_residue_bond_Base::CanGetBond_order (void) const
 Check if it is safe to call GetBond_order method. More...
 
void CIntra_residue_bond_Base::ResetBond_order (void)
 Reset Bond_order data member. More...
 
TBond_order CIntra_residue_bond_Base::GetBond_order (void) const
 Get the Bond_order member data. More...
 
void CIntra_residue_bond_Base::SetBond_order (TBond_order value)
 Assign a value to Bond_order data member. More...
 
TBond_orderCIntra_residue_bond_Base::SetBond_order (void)
 Assign a value to Bond_order data member. More...
 
virtual void CIntra_residue_bond_Base::Reset (void)
 Reset the whole object. More...
 
 CIntra_residue_bond_Base::CIntra_residue_bond_Base (const CIntra_residue_bond_Base &)
 
CIntra_residue_bond_BaseCIntra_residue_bond_Base::operator= (const CIntra_residue_bond_Base &)
 
 CMolecule_graph::CMolecule_graph (void)
 
 CMolecule_graph::~CMolecule_graph (void)
 
 CMolecule_graph::CMolecule_graph (const CMolecule_graph &value)
 
CMolecule_graphCMolecule_graph::operator= (const CMolecule_graph &value)
 
 CMolecule_graph_Base::CMolecule_graph_Base (void)
 
virtual CMolecule_graph_Base::~CMolecule_graph_Base (void)
 
 CMolecule_graph_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CMolecule_graph_Base::IsSetId (void) const
 Check if a value has been assigned to Id data member. More...
 
bool CMolecule_graph_Base::CanGetId (void) const
 Check if it is safe to call GetId method. More...
 
void CMolecule_graph_Base::ResetId (void)
 Reset Id data member. More...
 
const TIdCMolecule_graph_Base::GetId (void) const
 Get the Id member data. More...
 
void CMolecule_graph_Base::SetId (const TId &value)
 Assign a value to Id data member. More...
 
TIdCMolecule_graph_Base::SetId (void)
 Assign a value to Id data member. More...
 
bool CMolecule_graph_Base::IsSetDescr (void) const
 Check if a value has been assigned to Descr data member. More...
 
bool CMolecule_graph_Base::CanGetDescr (void) const
 Check if it is safe to call GetDescr method. More...
 
void CMolecule_graph_Base::ResetDescr (void)
 Reset Descr data member. More...
 
const TDescrCMolecule_graph_Base::GetDescr (void) const
 Get the Descr member data. More...
 
TDescrCMolecule_graph_Base::SetDescr (void)
 Assign a value to Descr data member. More...
 
bool CMolecule_graph_Base::IsSetSeq_id (void) const
 Check if a value has been assigned to Seq_id data member. More...
 
bool CMolecule_graph_Base::CanGetSeq_id (void) const
 Check if it is safe to call GetSeq_id method. More...
 
void CMolecule_graph_Base::ResetSeq_id (void)
 Reset Seq_id data member. More...
 
const TSeq_idCMolecule_graph_Base::GetSeq_id (void) const
 Get the Seq_id member data. More...
 
void CMolecule_graph_Base::SetSeq_id (TSeq_id &value)
 Assign a value to Seq_id data member. More...
 
TSeq_idCMolecule_graph_Base::SetSeq_id (void)
 Assign a value to Seq_id data member. More...
 
bool CMolecule_graph_Base::IsSetResidue_sequence (void) const
 Check if a value has been assigned to Residue_sequence data member. More...
 
bool CMolecule_graph_Base::CanGetResidue_sequence (void) const
 Check if it is safe to call GetResidue_sequence method. More...
 
void CMolecule_graph_Base::ResetResidue_sequence (void)
 Reset Residue_sequence data member. More...
 
const TResidue_sequenceCMolecule_graph_Base::GetResidue_sequence (void) const
 Get the Residue_sequence member data. More...
 
TResidue_sequenceCMolecule_graph_Base::SetResidue_sequence (void)
 Assign a value to Residue_sequence data member. More...
 
bool CMolecule_graph_Base::IsSetInter_residue_bonds (void) const
 Check if a value has been assigned to Inter_residue_bonds data member. More...
 
bool CMolecule_graph_Base::CanGetInter_residue_bonds (void) const
 Check if it is safe to call GetInter_residue_bonds method. More...
 
void CMolecule_graph_Base::ResetInter_residue_bonds (void)
 Reset Inter_residue_bonds data member. More...
 
const TInter_residue_bondsCMolecule_graph_Base::GetInter_residue_bonds (void) const
 Get the Inter_residue_bonds member data. More...
 
TInter_residue_bondsCMolecule_graph_Base::SetInter_residue_bonds (void)
 Assign a value to Inter_residue_bonds data member. More...
 
bool CMolecule_graph_Base::IsSetSid (void) const
 Check if a value has been assigned to Sid data member. More...
 
bool CMolecule_graph_Base::CanGetSid (void) const
 Check if it is safe to call GetSid method. More...
 
void CMolecule_graph_Base::ResetSid (void)
 Reset Sid data member. More...
 
const TSidCMolecule_graph_Base::GetSid (void) const
 Get the Sid member data. More...
 
void CMolecule_graph_Base::SetSid (const TSid &value)
 Assign a value to Sid data member. More...
 
TSidCMolecule_graph_Base::SetSid (void)
 Assign a value to Sid data member. More...
 
virtual void CMolecule_graph_Base::Reset (void)
 Reset the whole object. More...
 
 CMolecule_graph_Base::CMolecule_graph_Base (const CMolecule_graph_Base &)
 
CMolecule_graph_BaseCMolecule_graph_Base::operator= (const CMolecule_graph_Base &)
 
 CMolecule_id::CMolecule_id (void)
 
 CMolecule_id::CMolecule_id (const int &value)
 Explicit constructor from the primitive type. More...
 
 CMolecule_id_Base::CMolecule_id_Base (void)
 
 CMolecule_id_Base::DECLARE_STD_ALIAS_TYPE_INFO ()
 
 CMolecule_id_Base::CMolecule_id_Base (const int &data)
 
NCBI_NS_NCBI::CNcbiOstreamoperator<< (NCBI_NS_NCBI::CNcbiOstream &str, const CMolecule_id_Base &obj)
 
NCBI_NS_NCBI::CNcbiIstreamoperator>> (NCBI_NS_NCBI::CNcbiIstream &str, CMolecule_id_Base &obj)
 
 CPCSubstance_id::CPCSubstance_id (void)
 
 CPCSubstance_id::CPCSubstance_id (const int &value)
 Explicit constructor from the primitive type. More...
 
 CPCSubstance_id_Base::CPCSubstance_id_Base (void)
 
 CPCSubstance_id_Base::DECLARE_STD_ALIAS_TYPE_INFO ()
 
 CPCSubstance_id_Base::CPCSubstance_id_Base (const int &data)
 
NCBI_NS_NCBI::CNcbiOstreamoperator<< (NCBI_NS_NCBI::CNcbiOstream &str, const CPCSubstance_id_Base &obj)
 
NCBI_NS_NCBI::CNcbiIstreamoperator>> (NCBI_NS_NCBI::CNcbiIstream &str, CPCSubstance_id_Base &obj)
 
 CResidue::CResidue (void)
 
 CResidue::~CResidue (void)
 
 CResidue::CResidue (const CResidue &value)
 
CResidueCResidue::operator= (const CResidue &value)
 
 CResidue_Base::CResidue_Base (void)
 
virtual CResidue_Base::~CResidue_Base (void)
 
 CResidue_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CResidue_Base::IsSetId (void) const
 Check if a value has been assigned to Id data member. More...
 
bool CResidue_Base::CanGetId (void) const
 Check if it is safe to call GetId method. More...
 
void CResidue_Base::ResetId (void)
 Reset Id data member. More...
 
const TIdCResidue_Base::GetId (void) const
 Get the Id member data. More...
 
void CResidue_Base::SetId (const TId &value)
 Assign a value to Id data member. More...
 
TIdCResidue_Base::SetId (void)
 Assign a value to Id data member. More...
 
bool CResidue_Base::IsSetName (void) const
 Check if a value has been assigned to Name data member. More...
 
bool CResidue_Base::CanGetName (void) const
 Check if it is safe to call GetName method. More...
 
void CResidue_Base::ResetName (void)
 Reset Name data member. More...
 
const TNameCResidue_Base::GetName (void) const
 Get the Name member data. More...
 
void CResidue_Base::SetName (const TName &value)
 Assign a value to Name data member. More...
 
void CResidue_Base::SetName (TName &&value)
 
TNameCResidue_Base::SetName (void)
 Assign a value to Name data member. More...
 
bool CResidue_Base::IsSetResidue_graph (void) const
 Check if a value has been assigned to Residue_graph data member. More...
 
bool CResidue_Base::CanGetResidue_graph (void) const
 Check if it is safe to call GetResidue_graph method. More...
 
void CResidue_Base::ResetResidue_graph (void)
 Reset Residue_graph data member. More...
 
const TResidue_graphCResidue_Base::GetResidue_graph (void) const
 Get the Residue_graph member data. More...
 
void CResidue_Base::SetResidue_graph (TResidue_graph &value)
 Assign a value to Residue_graph data member. More...
 
TResidue_graphCResidue_Base::SetResidue_graph (void)
 Assign a value to Residue_graph data member. More...
 
virtual void CResidue_Base::Reset (void)
 Reset the whole object. More...
 
 CResidue_Base::CResidue_Base (const CResidue_Base &)
 
CResidue_BaseCResidue_Base::operator= (const CResidue_Base &)
 
 CResidue_graph::CResidue_graph (void)
 
 CResidue_graph::~CResidue_graph (void)
 
 CResidue_graph::CResidue_graph (const CResidue_graph &value)
 
CResidue_graphCResidue_graph::operator= (const CResidue_graph &value)
 
 CResidue_graph_Base::CResidue_graph_Base (void)
 
virtual CResidue_graph_Base::~CResidue_graph_Base (void)
 
 CResidue_graph_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CResidue_graph_Base::EResidue_type (void)
 Access to EResidue_type's attributes (values, names) as defined in spec. More...
 
bool CResidue_graph_Base::IsSetId (void) const
 Check if a value has been assigned to Id data member. More...
 
bool CResidue_graph_Base::CanGetId (void) const
 Check if it is safe to call GetId method. More...
 
void CResidue_graph_Base::ResetId (void)
 Reset Id data member. More...
 
const TIdCResidue_graph_Base::GetId (void) const
 Get the Id member data. More...
 
void CResidue_graph_Base::SetId (const TId &value)
 Assign a value to Id data member. More...
 
TIdCResidue_graph_Base::SetId (void)
 Assign a value to Id data member. More...
 
bool CResidue_graph_Base::IsSetDescr (void) const
 Check if a value has been assigned to Descr data member. More...
 
bool CResidue_graph_Base::CanGetDescr (void) const
 Check if it is safe to call GetDescr method. More...
 
void CResidue_graph_Base::ResetDescr (void)
 Reset Descr data member. More...
 
const TDescrCResidue_graph_Base::GetDescr (void) const
 Get the Descr member data. More...
 
TDescrCResidue_graph_Base::SetDescr (void)
 Assign a value to Descr data member. More...
 
bool CResidue_graph_Base::IsSetResidue_type (void) const
 Check if a value has been assigned to Residue_type data member. More...
 
bool CResidue_graph_Base::CanGetResidue_type (void) const
 Check if it is safe to call GetResidue_type method. More...
 
void CResidue_graph_Base::ResetResidue_type (void)
 Reset Residue_type data member. More...
 
TResidue_type CResidue_graph_Base::GetResidue_type (void) const
 Get the Residue_type member data. More...
 
void CResidue_graph_Base::SetResidue_type (TResidue_type value)
 Assign a value to Residue_type data member. More...
 
TResidue_typeCResidue_graph_Base::SetResidue_type (void)
 Assign a value to Residue_type data member. More...
 
bool CResidue_graph_Base::IsSetIupac_code (void) const
 Check if a value has been assigned to Iupac_code data member. More...
 
bool CResidue_graph_Base::CanGetIupac_code (void) const
 Check if it is safe to call GetIupac_code method. More...
 
void CResidue_graph_Base::ResetIupac_code (void)
 Reset Iupac_code data member. More...
 
const TIupac_codeCResidue_graph_Base::GetIupac_code (void) const
 Get the Iupac_code member data. More...
 
TIupac_codeCResidue_graph_Base::SetIupac_code (void)
 Assign a value to Iupac_code data member. More...
 
bool CResidue_graph_Base::IsSetAtoms (void) const
 Check if a value has been assigned to Atoms data member. More...
 
bool CResidue_graph_Base::CanGetAtoms (void) const
 Check if it is safe to call GetAtoms method. More...
 
void CResidue_graph_Base::ResetAtoms (void)
 Reset Atoms data member. More...
 
const TAtomsCResidue_graph_Base::GetAtoms (void) const
 Get the Atoms member data. More...
 
TAtomsCResidue_graph_Base::SetAtoms (void)
 Assign a value to Atoms data member. More...
 
bool CResidue_graph_Base::IsSetBonds (void) const
 Check if a value has been assigned to Bonds data member. More...
 
bool CResidue_graph_Base::CanGetBonds (void) const
 Check if it is safe to call GetBonds method. More...
 
void CResidue_graph_Base::ResetBonds (void)
 Reset Bonds data member. More...
 
const TBondsCResidue_graph_Base::GetBonds (void) const
 Get the Bonds member data. More...
 
TBondsCResidue_graph_Base::SetBonds (void)
 Assign a value to Bonds data member. More...
 
bool CResidue_graph_Base::IsSetChiral_centers (void) const
 Check if a value has been assigned to Chiral_centers data member. More...
 
bool CResidue_graph_Base::CanGetChiral_centers (void) const
 Check if it is safe to call GetChiral_centers method. More...
 
void CResidue_graph_Base::ResetChiral_centers (void)
 Reset Chiral_centers data member. More...
 
const TChiral_centersCResidue_graph_Base::GetChiral_centers (void) const
 Get the Chiral_centers member data. More...
 
TChiral_centersCResidue_graph_Base::SetChiral_centers (void)
 Assign a value to Chiral_centers data member. More...
 
virtual void CResidue_graph_Base::Reset (void)
 Reset the whole object. More...
 
 CResidue_graph_Base::CResidue_graph_Base (const CResidue_graph_Base &)
 
CResidue_graph_BaseCResidue_graph_Base::operator= (const CResidue_graph_Base &)
 
 CResidue_graph_id::CResidue_graph_id (void)
 
 CResidue_graph_id::CResidue_graph_id (const int &value)
 Explicit constructor from the primitive type. More...
 
 CResidue_graph_id_Base::CResidue_graph_id_Base (void)
 
 CResidue_graph_id_Base::DECLARE_STD_ALIAS_TYPE_INFO ()
 
 CResidue_graph_id_Base::CResidue_graph_id_Base (const int &data)
 
NCBI_NS_NCBI::CNcbiOstreamoperator<< (NCBI_NS_NCBI::CNcbiOstream &str, const CResidue_graph_id_Base &obj)
 
NCBI_NS_NCBI::CNcbiIstreamoperator>> (NCBI_NS_NCBI::CNcbiIstream &str, CResidue_graph_id_Base &obj)
 
 CResidue_graph_pntr::CResidue_graph_pntr (void)
 
 CResidue_graph_pntr::~CResidue_graph_pntr (void)
 
 CResidue_graph_pntr::CResidue_graph_pntr (const CResidue_graph_pntr &value)
 
CResidue_graph_pntrCResidue_graph_pntr::operator= (const CResidue_graph_pntr &value)
 
 CResidue_graph_pntr_Base::CResidue_graph_pntr_Base (void)
 
virtual CResidue_graph_pntr_Base::~CResidue_graph_pntr_Base (void)
 
 CResidue_graph_pntr_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
virtual void CResidue_graph_pntr_Base::Reset (void)
 Reset the whole object. More...
 
virtual void CResidue_graph_pntr_Base::ResetSelection (void)
 Reset the selection (set it to e_not_set). More...
 
E_Choice CResidue_graph_pntr_Base::Which (void) const
 Which variant is currently selected. More...
 
void CResidue_graph_pntr_Base::CheckSelected (E_Choice index) const
 Verify selection, throw exception if it differs from the expected. More...
 
void CResidue_graph_pntr_Base::ThrowInvalidSelection (E_Choice index) const
 Throw 'InvalidSelection' exception. More...
 
static string CResidue_graph_pntr_Base::SelectionName (E_Choice index)
 Retrieve selection name (for diagnostic purposes). More...
 
void CResidue_graph_pntr_Base::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
 Select the requested variant if needed. More...
 
void CResidue_graph_pntr_Base::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
 Select the requested variant if needed, allocating CObject variants from memory pool. More...
 
bool CResidue_graph_pntr_Base::IsLocal (void) const
 Check if variant Local is selected. More...
 
const TLocalCResidue_graph_pntr_Base::GetLocal (void) const
 Get the variant data. More...
 
TLocalCResidue_graph_pntr_Base::SetLocal (void)
 Select the variant. More...
 
void CResidue_graph_pntr_Base::SetLocal (const TLocal &value)
 Select the variant and set its data. More...
 
bool CResidue_graph_pntr_Base::IsBiostruc (void) const
 Check if variant Biostruc is selected. More...
 
const TBiostrucCResidue_graph_pntr_Base::GetBiostruc (void) const
 Get the variant data. More...
 
TBiostrucCResidue_graph_pntr_Base::SetBiostruc (void)
 Select the variant. More...
 
void CResidue_graph_pntr_Base::SetBiostruc (TBiostruc &value)
 Select the variant and set its data. More...
 
bool CResidue_graph_pntr_Base::IsStandard (void) const
 Check if variant Standard is selected. More...
 
const TStandardCResidue_graph_pntr_Base::GetStandard (void) const
 Get the variant data. More...
 
TStandardCResidue_graph_pntr_Base::SetStandard (void)
 Select the variant. More...
 
void CResidue_graph_pntr_Base::SetStandard (TStandard &value)
 Select the variant and set its data. More...
 
 CResidue_graph_pntr_Base::CResidue_graph_pntr_Base (const CResidue_graph_pntr_Base &)
 
CResidue_graph_pntr_BaseCResidue_graph_pntr_Base::operator= (const CResidue_graph_pntr_Base &)
 
void CResidue_graph_pntr_Base::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
 
 CResidue_id::CResidue_id (void)
 
 CResidue_id::CResidue_id (const int &value)
 Explicit constructor from the primitive type. More...
 
 CResidue_id_Base::CResidue_id_Base (void)
 
 CResidue_id_Base::DECLARE_STD_ALIAS_TYPE_INFO ()
 
 CResidue_id_Base::CResidue_id_Base (const int &data)
 
NCBI_NS_NCBI::CNcbiOstreamoperator<< (NCBI_NS_NCBI::CNcbiOstream &str, const CResidue_id_Base &obj)
 
NCBI_NS_NCBI::CNcbiIstreamoperator>> (NCBI_NS_NCBI::CNcbiIstream &str, CResidue_id_Base &obj)
 

Variables

Uint4 CAtom_Base::m_set_State [1]
 
CAtom_id CAtom_Base::m_Id
 
string CAtom_Base::m_Name
 
list< stringCAtom_Base::m_Iupac_code
 
EElement CAtom_Base::m_Element
 
EIonizable_proton CAtom_Base::m_Ionizable_proton
 
Uint4 CAtom_pntr_Base::m_set_State [1]
 
CMolecule_id CAtom_pntr_Base::m_Molecule_id
 
CResidue_id CAtom_pntr_Base::m_Residue_id
 
CAtom_id CAtom_pntr_Base::m_Atom_id
 
Uint4 CAtom_pntr_set_Base::m_set_State [1]
 
list< CRef< CAtom_pntr > > CAtom_pntr_set_Base::m_data
 
E_Choice CBiomol_descr_Base::m_choice
 
static const char *const CBiomol_descr_Base::sm_SelectionNames []
 
TAssembly_type   CBiomol_descr_Base::m_Assembly_type
 
TMolecule_type   CBiomol_descr_Base::m_Molecule_type
 
NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CBiomol_descr_Base::m_string
 
NCBI_NS_NCBI::CSerialObject *   CBiomol_descr_Base::m_object
 
union {
   TAssembly_type   CBiomol_descr_Base::m_Assembly_type
 
   TMolecule_type   CBiomol_descr_Base::m_Molecule_type
 
   NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CBiomol_descr_Base::m_string
 
   NCBI_NS_NCBI::CSerialObject *   CBiomol_descr_Base::m_object
 
}; 
 
Uint4 CBiostruc_residue_graph_set_pntr_Base::m_set_State [1]
 
CRef< TBiostruc_residue_graph_set_idCBiostruc_residue_graph_set_pntr_Base::m_Biostruc_residue_graph_set_id
 
CResidue_graph_id CBiostruc_residue_graph_set_pntr_Base::m_Residue_graph_id
 
Uint4 CBiostruc_graph_Base::m_set_State [1]
 
list< CRef< CBiomol_descr > > CBiostruc_graph_Base::m_Descr
 
list< CRef< CMolecule_graph > > CBiostruc_graph_Base::m_Molecule_graphs
 
list< CRef< CInter_residue_bond > > CBiostruc_graph_Base::m_Inter_molecule_bonds
 
list< CRef< CResidue_graph > > CBiostruc_graph_Base::m_Residue_graphs
 
Uint4 CBiostruc_graph_pntr_Base::m_set_State [1]
 
CRef< TBiostruc_idCBiostruc_graph_pntr_Base::m_Biostruc_id
 
CResidue_graph_id CBiostruc_graph_pntr_Base::m_Residue_graph_id
 
Uint4 CChiral_center_Base::m_set_State [1]
 
CAtom_id CChiral_center_Base::m_C
 
CAtom_id CChiral_center_Base::m_N1
 
CAtom_id CChiral_center_Base::m_N2
 
CAtom_id CChiral_center_Base::m_N3
 
ESign CChiral_center_Base::m_Sign
 
Uint4 CInter_residue_bond_Base::m_set_State [1]
 
CRef< TAtom_id_1CInter_residue_bond_Base::m_Atom_id_1
 
CRef< TAtom_id_2CInter_residue_bond_Base::m_Atom_id_2
 
int CInter_residue_bond_Base::m_Bond_order
 
Uint4 CIntra_residue_bond_Base::m_set_State [1]
 
CAtom_id CIntra_residue_bond_Base::m_Atom_id_1
 
CAtom_id CIntra_residue_bond_Base::m_Atom_id_2
 
int CIntra_residue_bond_Base::m_Bond_order
 
Uint4 CMolecule_graph_Base::m_set_State [1]
 
CMolecule_id CMolecule_graph_Base::m_Id
 
list< CRef< CBiomol_descr > > CMolecule_graph_Base::m_Descr
 
CRef< TSeq_idCMolecule_graph_Base::m_Seq_id
 
list< CRef< CResidue > > CMolecule_graph_Base::m_Residue_sequence
 
list< CRef< CInter_residue_bond > > CMolecule_graph_Base::m_Inter_residue_bonds
 
CPCSubstance_id CMolecule_graph_Base::m_Sid
 
Uint4 CResidue_Base::m_set_State [1]
 
CResidue_id CResidue_Base::m_Id
 
string CResidue_Base::m_Name
 
CRef< TResidue_graphCResidue_Base::m_Residue_graph
 
Uint4 CResidue_graph_Base::m_set_State [1]
 
CResidue_graph_id CResidue_graph_Base::m_Id
 
list< CRef< CBiomol_descr > > CResidue_graph_Base::m_Descr
 
int CResidue_graph_Base::m_Residue_type
 
list< stringCResidue_graph_Base::m_Iupac_code
 
list< CRef< CAtom > > CResidue_graph_Base::m_Atoms
 
list< CRef< CIntra_residue_bond > > CResidue_graph_Base::m_Bonds
 
list< CRef< CChiral_center > > CResidue_graph_Base::m_Chiral_centers
 
E_Choice CResidue_graph_pntr_Base::m_choice
 
static const char *const CResidue_graph_pntr_Base::sm_SelectionNames []
 
NCBI_NS_NCBI::CUnionBuffer< TLocal >   CResidue_graph_pntr_Base::m_Local
 
NCBI_NS_NCBI::CSerialObject *   CResidue_graph_pntr_Base::m_object
 
union {
   NCBI_NS_NCBI::CUnionBuffer< TLocal >   CResidue_graph_pntr_Base::m_Local
 
   NCBI_NS_NCBI::CSerialObject *   CResidue_graph_pntr_Base::m_object
 
}; 
 

Detailed Description

Typedef Documentation

◆ TAssembly_type

Definition at line 190 of file Biomol_descr_.hpp.

◆ TAtom_id

Definition at line 91 of file Atom_pntr_.hpp.

◆ TAtom_id_1 [1/2]

Definition at line 104 of file Inter_residue_bond_.hpp.

◆ TAtom_id_1 [2/2]

Definition at line 108 of file Intra_residue_bond_.hpp.

◆ TAtom_id_2 [1/2]

Definition at line 105 of file Inter_residue_bond_.hpp.

◆ TAtom_id_2 [2/2]

Definition at line 109 of file Intra_residue_bond_.hpp.

◆ TAtoms

Definition at line 121 of file Residue_graph_.hpp.

◆ TAttribution

Definition at line 189 of file Biomol_descr_.hpp.

◆ TBiostruc

Definition at line 155 of file Residue_graph_pntr_.hpp.

◆ TBiostruc_id

Definition at line 89 of file Biostruc_graph_pntr_.hpp.

◆ TBiostruc_residue_graph_set_id

Definition at line 89 of file Biost_resid_graph_set_pntr_.hpp.

◆ TBond_order [1/2]

Definition at line 106 of file Inter_residue_bond_.hpp.

◆ TBond_order [2/2]

Definition at line 110 of file Intra_residue_bond_.hpp.

◆ TBonds

Definition at line 122 of file Residue_graph_.hpp.

◆ TC

Definition at line 103 of file Chiral_center_.hpp.

◆ TChiral_centers

Definition at line 123 of file Residue_graph_.hpp.

◆ Tdata

Definition at line 89 of file Atom_pntr_set_.hpp.

◆ TDescr [1/3]

Definition at line 106 of file Biostruc_graph_.hpp.

◆ TDescr [2/3]

Definition at line 123 of file Molecule_graph_.hpp.

◆ TDescr [3/3]

Definition at line 118 of file Residue_graph_.hpp.

◆ TElement

Definition at line 220 of file Atom_.hpp.

◆ TId [1/4]

Definition at line 217 of file Atom_.hpp.

◆ TId [2/4]

Definition at line 122 of file Molecule_graph_.hpp.

◆ TId [3/4]

Definition at line 92 of file Residue_.hpp.

◆ TId [4/4]

Definition at line 117 of file Residue_graph_.hpp.

◆ TInter_molecule_bonds

Definition at line 108 of file Biostruc_graph_.hpp.

◆ TInter_residue_bonds

Definition at line 126 of file Molecule_graph_.hpp.

◆ TIonizable_proton

Definition at line 221 of file Atom_.hpp.

◆ TIupac_code [1/2]

Definition at line 219 of file Atom_.hpp.

◆ TIupac_code [2/2]

Definition at line 120 of file Residue_graph_.hpp.

◆ TLocal

Definition at line 154 of file Residue_graph_pntr_.hpp.

◆ TmemberIndex [1/11]

Definition at line 232 of file Atom_.hpp.

◆ TmemberIndex [2/11]

Definition at line 100 of file Atom_pntr_.hpp.

◆ TmemberIndex [3/11]

Definition at line 98 of file Biost_resid_graph_set_pntr_.hpp.

◆ TmemberIndex [4/11]

Definition at line 119 of file Biostruc_graph_.hpp.

◆ TmemberIndex [5/11]

Definition at line 98 of file Biostruc_graph_pntr_.hpp.

◆ TmemberIndex [6/11]

Definition at line 118 of file Chiral_center_.hpp.

◆ TmemberIndex [7/11]

Definition at line 115 of file Inter_residue_bond_.hpp.

◆ TmemberIndex [8/11]

Definition at line 119 of file Intra_residue_bond_.hpp.

◆ TmemberIndex [9/11]

Definition at line 139 of file Molecule_graph_.hpp.

◆ TmemberIndex [10/11]

Definition at line 103 of file Residue_.hpp.

◆ TmemberIndex [11/11]

Definition at line 136 of file Residue_graph_.hpp.

◆ TMolecule_graphs

Definition at line 107 of file Biostruc_graph_.hpp.

◆ TMolecule_id

Definition at line 89 of file Atom_pntr_.hpp.

◆ TMolecule_type

Definition at line 191 of file Biomol_descr_.hpp.

◆ TN1

Definition at line 104 of file Chiral_center_.hpp.

◆ TN2

Definition at line 105 of file Chiral_center_.hpp.

◆ TN3

Definition at line 106 of file Chiral_center_.hpp.

◆ TName [1/3]

Definition at line 218 of file Atom_.hpp.

◆ TName [2/3]

Definition at line 183 of file Biomol_descr_.hpp.

◆ TName [3/3]

Definition at line 93 of file Residue_.hpp.

◆ TOrganism

Definition at line 188 of file Biomol_descr_.hpp.

◆ TOther_comment

Definition at line 187 of file Biomol_descr_.hpp.

◆ Tparent [1/38]

typedef CAtom_Base CAtom::Tparent
private

Definition at line 67 of file Atom.hpp.

◆ Tparent [2/38]

Definition at line 86 of file Atom_.hpp.

◆ Tparent [3/38]

Definition at line 67 of file Atom_id.hpp.

◆ Tparent [4/38]

Definition at line 70 of file Atom_id_.hpp.

◆ Tparent [5/38]

Definition at line 67 of file Atom_pntr.hpp.

◆ Tparent [6/38]

Definition at line 78 of file Atom_pntr_.hpp.

◆ Tparent [7/38]

Definition at line 67 of file Atom_pntr_set.hpp.

◆ Tparent [8/38]

Definition at line 78 of file Atom_pntr_set_.hpp.

◆ Tparent [9/38]

Definition at line 67 of file Biomol_descr.hpp.

◆ Tparent [10/38]

Definition at line 84 of file Biomol_descr_.hpp.

◆ Tparent [11/38]

Definition at line 67 of file Biost_resid_graph_set_pntr.hpp.

◆ Tparent [12/38]

Definition at line 78 of file Biost_resid_graph_set_pntr_.hpp.

◆ Tparent [13/38]

Definition at line 67 of file Biostruc_graph.hpp.

◆ Tparent [14/38]

Definition at line 95 of file Biostruc_graph_.hpp.

◆ Tparent [15/38]

Definition at line 67 of file Biostruc_graph_pntr.hpp.

◆ Tparent [16/38]

Definition at line 78 of file Biostruc_graph_pntr_.hpp.

◆ Tparent [17/38]

Definition at line 67 of file Chiral_center.hpp.

◆ Tparent [18/38]

Definition at line 84 of file Chiral_center_.hpp.

◆ Tparent [19/38]

Definition at line 67 of file Inter_residue_bond.hpp.

◆ Tparent [20/38]

Definition at line 80 of file Inter_residue_bond_.hpp.

◆ Tparent [21/38]

Definition at line 67 of file Intra_residue_bond.hpp.

◆ Tparent [22/38]

Definition at line 84 of file Intra_residue_bond_.hpp.

◆ Tparent [23/38]

Definition at line 67 of file Molecule_graph.hpp.

◆ Tparent [24/38]

Definition at line 111 of file Molecule_graph_.hpp.

◆ Tparent [25/38]

Definition at line 67 of file Molecule_id.hpp.

◆ Tparent [26/38]

Definition at line 70 of file Molecule_id_.hpp.

◆ Tparent [27/38]

Definition at line 67 of file PCSubstance_id.hpp.

◆ Tparent [28/38]

Definition at line 71 of file PCSubstance_id_.hpp.

◆ Tparent [29/38]

Definition at line 67 of file Residue.hpp.

◆ Tparent [30/38]

Definition at line 81 of file Residue_.hpp.

◆ Tparent [31/38]

Definition at line 67 of file Residue_graph.hpp.

◆ Tparent [32/38]

Definition at line 96 of file Residue_graph_.hpp.

◆ Tparent [33/38]

Definition at line 67 of file Residue_graph_id.hpp.

◆ Tparent [34/38]

Definition at line 70 of file Residue_graph_id_.hpp.

◆ Tparent [35/38]

Definition at line 67 of file Residue_graph_pntr.hpp.

◆ Tparent [36/38]

Definition at line 83 of file Residue_graph_pntr_.hpp.

◆ Tparent [37/38]

Definition at line 67 of file Residue_id.hpp.

◆ Tparent [38/38]

Definition at line 70 of file Residue_id_.hpp.

◆ TPdb_class

Definition at line 184 of file Biomol_descr_.hpp.

◆ TPdb_comment

Definition at line 186 of file Biomol_descr_.hpp.

◆ TPdb_source

Definition at line 185 of file Biomol_descr_.hpp.

◆ TResidue_graph

Definition at line 94 of file Residue_.hpp.

◆ TResidue_graph_id [1/2]

Definition at line 90 of file Biost_resid_graph_set_pntr_.hpp.

◆ TResidue_graph_id [2/2]

Definition at line 90 of file Biostruc_graph_pntr_.hpp.

◆ TResidue_graphs

Definition at line 109 of file Biostruc_graph_.hpp.

◆ TResidue_id

Definition at line 90 of file Atom_pntr_.hpp.

◆ TResidue_sequence

Definition at line 125 of file Molecule_graph_.hpp.

◆ TResidue_type

Definition at line 119 of file Residue_graph_.hpp.

◆ TSeq_id

Definition at line 124 of file Molecule_graph_.hpp.

◆ TSid

Definition at line 127 of file Molecule_graph_.hpp.

◆ TSign

Definition at line 107 of file Chiral_center_.hpp.

◆ TStandard

Definition at line 156 of file Residue_graph_pntr_.hpp.

Enumeration Type Documentation

◆ E_Choice [1/2]

Choice variants.

Enumerator
e_not_set 

No variant selected.

e_Name 
e_Pdb_class 
e_Pdb_source 
e_Pdb_comment 
e_Other_comment 
e_Organism 
e_Attribution 
e_Assembly_type 
e_Molecule_type 

Definition at line 118 of file Biomol_descr_.hpp.

◆ E_Choice [2/2]

Choice variants.

Enumerator
e_not_set 

No variant selected.

e_Local 
e_Biostruc 
e_Standard 

Definition at line 95 of file Residue_graph_pntr_.hpp.

◆ E_ChoiceStopper [1/2]

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice 

== e_Molecule_type+1

Definition at line 131 of file Biomol_descr_.hpp.

◆ E_ChoiceStopper [2/2]

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice 

== e_Standard+1

Definition at line 102 of file Residue_graph_pntr_.hpp.

◆ E_memberIndex [1/11]

Enumerator
e__allMandatory 
e_id 
e_name 
e_iupac_code 
e_element 
e_ionizable_proton 

Definition at line 224 of file Atom_.hpp.

◆ E_memberIndex [2/11]

Enumerator
e__allMandatory 
e_molecule_id 
e_residue_id 
e_atom_id 

Definition at line 94 of file Atom_pntr_.hpp.

◆ E_memberIndex [3/11]

Enumerator
e__allMandatory 
e_biostruc_residue_graph_set_id 
e_residue_graph_id 

Definition at line 93 of file Biost_resid_graph_set_pntr_.hpp.

◆ E_memberIndex [4/11]

Enumerator
e__allMandatory 
e_descr 
e_molecule_graphs 
e_inter_molecule_bonds 
e_residue_graphs 

Definition at line 112 of file Biostruc_graph_.hpp.

◆ E_memberIndex [5/11]

Enumerator
e__allMandatory 
e_biostruc_id 
e_residue_graph_id 

Definition at line 93 of file Biostruc_graph_pntr_.hpp.

◆ E_memberIndex [6/11]

Enumerator
e__allMandatory 
e_c 
e_n1 
e_n2 
e_n3 
e_sign 

Definition at line 110 of file Chiral_center_.hpp.

◆ E_memberIndex [7/11]

Enumerator
e__allMandatory 
e_atom_id_1 
e_atom_id_2 
e_bond_order 

Definition at line 109 of file Inter_residue_bond_.hpp.

◆ E_memberIndex [8/11]

Enumerator
e__allMandatory 
e_atom_id_1 
e_atom_id_2 
e_bond_order 

Definition at line 113 of file Intra_residue_bond_.hpp.

◆ E_memberIndex [9/11]

Enumerator
e__allMandatory 
e_id 
e_descr 
e_seq_id 
e_residue_sequence 
e_inter_residue_bonds 
e_sid 

Definition at line 130 of file Molecule_graph_.hpp.

◆ E_memberIndex [10/11]

Enumerator
e__allMandatory 
e_id 
e_name 
e_residue_graph 

Definition at line 97 of file Residue_.hpp.

◆ E_memberIndex [11/11]

Enumerator
e__allMandatory 
e_id 
e_descr 
e_residue_type 
e_iupac_code 
e_atoms 
e_bonds 
e_chiral_centers 

Definition at line 126 of file Residue_graph_.hpp.

◆ EAssembly_type

Enumerator
eAssembly_type_physiological_form 
eAssembly_type_crystallographic_cell 
eAssembly_type_other 

Definition at line 94 of file Biomol_descr_.hpp.

◆ EBond_order [1/2]

Enumerator
eBond_order_single 
eBond_order_partial_double 
eBond_order_aromatic 
eBond_order_double 
eBond_order_triple 
eBond_order_other 
eBond_order_unknown 

Definition at line 90 of file Inter_residue_bond_.hpp.

◆ EBond_order [2/2]

Enumerator
eBond_order_single 
eBond_order_partial_double 
eBond_order_aromatic 
eBond_order_double 
eBond_order_triple 
eBond_order_other 
eBond_order_unknown 

Definition at line 94 of file Intra_residue_bond_.hpp.

◆ EElement

Enumerator
eElement_h 
eElement_he 
eElement_li 
eElement_be 
eElement_b 
eElement_c 
eElement_n 
eElement_o 
eElement_f 
eElement_ne 
eElement_na 
eElement_mg 
eElement_al 
eElement_si 
eElement_p 
eElement_s 
eElement_cl 
eElement_ar 
eElement_k 
eElement_ca 
eElement_sc 
eElement_ti 
eElement_v 
eElement_cr 
eElement_mn 
eElement_fe 
eElement_co 
eElement_ni 
eElement_cu 
eElement_zn 
eElement_ga 
eElement_ge 
eElement_as 
eElement_se 
eElement_br 
eElement_kr 
eElement_rb 
eElement_sr 
eElement_y 
eElement_zr 
eElement_nb 
eElement_mo 
eElement_tc 
eElement_ru 
eElement_rh 
eElement_pd 
eElement_ag 
eElement_cd 
eElement_in 
eElement_sn 
eElement_sb 
eElement_te 
eElement_i 
eElement_xe 
eElement_cs 
eElement_ba 
eElement_la 
eElement_ce 
eElement_pr 
eElement_nd 
eElement_pm 
eElement_sm 
eElement_eu 
eElement_gd 
eElement_tb 
eElement_dy 
eElement_ho 
eElement_er 
eElement_tm 
eElement_yb 
eElement_lu 
eElement_hf 
eElement_ta 
eElement_w 
eElement_re 
eElement_os 
eElement_ir 
eElement_pt 
eElement_au 
eElement_hg 
eElement_tl 
eElement_pb 
eElement_bi 
eElement_po 
eElement_at 
eElement_rn 
eElement_fr 
eElement_ra 
eElement_ac 
eElement_th 
eElement_pa 
eElement_u 
eElement_np 
eElement_pu 
eElement_am 
eElement_cm 
eElement_bk 
eElement_cf 
eElement_es 
eElement_fm 
eElement_md 
eElement_no 
eElement_lr 
eElement_other 
eElement_unknown 

Definition at line 96 of file Atom_.hpp.

◆ EIonizable_proton

Enumerator
eIonizable_proton_true 
eIonizable_proton_false 
eIonizable_proton_unknown 

Definition at line 207 of file Atom_.hpp.

◆ EMolecule_type

Enumerator
eMolecule_type_dna 
eMolecule_type_rna 
eMolecule_type_protein 
eMolecule_type_other_biopolymer 
eMolecule_type_solvent 
eMolecule_type_other_nonpolymer 
eMolecule_type_other 

Definition at line 103 of file Biomol_descr_.hpp.

◆ EResidue_type

Enumerator
eResidue_type_deoxyribonucleotide 
eResidue_type_ribonucleotide 
eResidue_type_amino_acid 
eResidue_type_other 

Definition at line 106 of file Residue_graph_.hpp.

◆ ESign

Enumerator
eSign_positive 
eSign_negative 

Definition at line 94 of file Chiral_center_.hpp.

Function Documentation

◆ CanGet()

bool CAtom_pntr_set_Base::CanGet ( void  ) const
inline

Check if it is safe to call Get method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 158 of file Atom_pntr_set_.hpp.

◆ CanGetAtom_id()

bool CAtom_pntr_Base::CanGetAtom_id ( void  ) const
inline

Check if it is safe to call GetAtom_id method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 332 of file Atom_pntr_.hpp.

References CAtom_pntr_Base::IsSetAtom_id().

Referenced by CAtom_pntr_Base::GetAtom_id().

◆ CanGetAtom_id_1() [1/2]

bool CInter_residue_bond_Base::CanGetAtom_id_1 ( void  ) const
inline

Check if it is safe to call GetAtom_id_1 method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 263 of file Inter_residue_bond_.hpp.

◆ CanGetAtom_id_1() [2/2]

bool CIntra_residue_bond_Base::CanGetAtom_id_1 ( void  ) const
inline

Check if it is safe to call GetAtom_id_1 method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 267 of file Intra_residue_bond_.hpp.

References CIntra_residue_bond_Base::IsSetAtom_id_1().

Referenced by CIntra_residue_bond_Base::GetAtom_id_1().

◆ CanGetAtom_id_2() [1/2]

bool CInter_residue_bond_Base::CanGetAtom_id_2 ( void  ) const
inline

Check if it is safe to call GetAtom_id_2 method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 293 of file Inter_residue_bond_.hpp.

◆ CanGetAtom_id_2() [2/2]

bool CIntra_residue_bond_Base::CanGetAtom_id_2 ( void  ) const
inline

Check if it is safe to call GetAtom_id_2 method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 309 of file Intra_residue_bond_.hpp.

References CIntra_residue_bond_Base::IsSetAtom_id_2().

Referenced by CIntra_residue_bond_Base::GetAtom_id_2().

◆ CanGetAtoms()

bool CResidue_graph_Base::CanGetAtoms ( void  ) const
inline

Check if it is safe to call GetAtoms method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 545 of file Residue_graph_.hpp.

◆ CanGetBiostruc_id()

bool CBiostruc_graph_pntr_Base::CanGetBiostruc_id ( void  ) const
inline

Check if it is safe to call GetBiostruc_id method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 208 of file Biostruc_graph_pntr_.hpp.

◆ CanGetBiostruc_residue_graph_set_id()

bool CBiostruc_residue_graph_set_pntr_Base::CanGetBiostruc_residue_graph_set_id ( void  ) const
inline

Check if it is safe to call GetBiostruc_residue_graph_set_id method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 208 of file Biost_resid_graph_set_pntr_.hpp.

◆ CanGetBond_order() [1/2]

bool CInter_residue_bond_Base::CanGetBond_order ( void  ) const
inline

Check if it is safe to call GetBond_order method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 323 of file Inter_residue_bond_.hpp.

References CInter_residue_bond_Base::IsSetBond_order().

Referenced by CInter_residue_bond_Base::GetBond_order().

◆ CanGetBond_order() [2/2]

bool CIntra_residue_bond_Base::CanGetBond_order ( void  ) const
inline

Check if it is safe to call GetBond_order method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 351 of file Intra_residue_bond_.hpp.

References CIntra_residue_bond_Base::IsSetBond_order().

Referenced by CIntra_residue_bond_Base::GetBond_order().

◆ CanGetBonds()

bool CResidue_graph_Base::CanGetBonds ( void  ) const
inline

Check if it is safe to call GetBonds method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 570 of file Residue_graph_.hpp.

◆ CanGetC()

bool CChiral_center_Base::CanGetC ( void  ) const
inline

Check if it is safe to call GetC method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 342 of file Chiral_center_.hpp.

References CChiral_center_Base::IsSetC().

Referenced by CChiral_center_Base::GetC().

◆ CanGetChiral_centers()

bool CResidue_graph_Base::CanGetChiral_centers ( void  ) const
inline

Check if it is safe to call GetChiral_centers method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 595 of file Residue_graph_.hpp.

◆ CanGetDescr() [1/3]

bool CBiostruc_graph_Base::CanGetDescr ( void  ) const
inline

Check if it is safe to call GetDescr method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 281 of file Biostruc_graph_.hpp.

◆ CanGetDescr() [2/3]

bool CMolecule_graph_Base::CanGetDescr ( void  ) const
inline

Check if it is safe to call GetDescr method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 425 of file Molecule_graph_.hpp.

◆ CanGetDescr() [3/3]

bool CResidue_graph_Base::CanGetDescr ( void  ) const
inline

Check if it is safe to call GetDescr method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 448 of file Residue_graph_.hpp.

◆ CanGetElement()

bool CAtom_Base::CanGetElement ( void  ) const
inline

Check if it is safe to call GetElement method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 565 of file Atom_.hpp.

References CAtom_Base::IsSetElement().

Referenced by CAtom_Base::GetElement().

◆ CanGetId() [1/4]

bool CAtom_Base::CanGetId ( void  ) const
inline

Check if it is safe to call GetId method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 451 of file Atom_.hpp.

References CAtom_Base::IsSetId().

Referenced by CAtom_Base::GetId().

◆ CanGetId() [2/4]

bool CMolecule_graph_Base::CanGetId ( void  ) const
inline

Check if it is safe to call GetId method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 383 of file Molecule_graph_.hpp.

References CMolecule_graph_Base::IsSetId().

Referenced by CMolecule_graph_Base::GetId().

◆ CanGetId() [3/4]

bool CResidue_Base::CanGetId ( void  ) const
inline

Check if it is safe to call GetId method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 252 of file Residue_.hpp.

References CResidue_Base::IsSetId().

Referenced by CResidue_Base::GetId().

◆ CanGetId() [4/4]

bool CResidue_graph_Base::CanGetId ( void  ) const
inline

Check if it is safe to call GetId method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 406 of file Residue_graph_.hpp.

References CResidue_graph_Base::IsSetId().

Referenced by CResidue_graph_Base::GetId().

◆ CanGetInter_molecule_bonds()

bool CBiostruc_graph_Base::CanGetInter_molecule_bonds ( void  ) const
inline

Check if it is safe to call GetInter_molecule_bonds method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 331 of file Biostruc_graph_.hpp.

◆ CanGetInter_residue_bonds()

bool CMolecule_graph_Base::CanGetInter_residue_bonds ( void  ) const
inline

Check if it is safe to call GetInter_residue_bonds method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 496 of file Molecule_graph_.hpp.

◆ CanGetIonizable_proton()

bool CAtom_Base::CanGetIonizable_proton ( void  ) const
inline

Check if it is safe to call GetIonizable_proton method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 612 of file Atom_.hpp.

References CAtom_Base::IsSetIonizable_proton().

Referenced by CAtom_Base::GetIonizable_proton().

◆ CanGetIupac_code() [1/2]

bool CAtom_Base::CanGetIupac_code ( void  ) const
inline

Check if it is safe to call GetIupac_code method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 540 of file Atom_.hpp.

◆ CanGetIupac_code() [2/2]

bool CResidue_graph_Base::CanGetIupac_code ( void  ) const
inline

Check if it is safe to call GetIupac_code method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 520 of file Residue_graph_.hpp.

◆ CanGetMolecule_graphs()

bool CBiostruc_graph_Base::CanGetMolecule_graphs ( void  ) const
inline

Check if it is safe to call GetMolecule_graphs method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 306 of file Biostruc_graph_.hpp.

◆ CanGetMolecule_id()

bool CAtom_pntr_Base::CanGetMolecule_id ( void  ) const
inline

Check if it is safe to call GetMolecule_id method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 248 of file Atom_pntr_.hpp.

References CAtom_pntr_Base::IsSetMolecule_id().

Referenced by CAtom_pntr_Base::GetMolecule_id().

◆ CanGetN1()

bool CChiral_center_Base::CanGetN1 ( void  ) const
inline

Check if it is safe to call GetN1 method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 384 of file Chiral_center_.hpp.

References CChiral_center_Base::IsSetN1().

Referenced by CChiral_center_Base::GetN1().

◆ CanGetN2()

bool CChiral_center_Base::CanGetN2 ( void  ) const
inline

Check if it is safe to call GetN2 method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 426 of file Chiral_center_.hpp.

References CChiral_center_Base::IsSetN2().

Referenced by CChiral_center_Base::GetN2().

◆ CanGetN3()

bool CChiral_center_Base::CanGetN3 ( void  ) const
inline

Check if it is safe to call GetN3 method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 468 of file Chiral_center_.hpp.

References CChiral_center_Base::IsSetN3().

Referenced by CChiral_center_Base::GetN3().

◆ CanGetName() [1/2]

bool CAtom_Base::CanGetName ( void  ) const
inline

Check if it is safe to call GetName method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 493 of file Atom_.hpp.

References CAtom_Base::IsSetName().

Referenced by CAtom_Base::GetName().

◆ CanGetName() [2/2]

bool CResidue_Base::CanGetName ( void  ) const
inline

Check if it is safe to call GetName method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 294 of file Residue_.hpp.

References CResidue_Base::IsSetName().

Referenced by CResidue_Base::GetName().

◆ CanGetResidue_graph()

bool CResidue_Base::CanGetResidue_graph ( void  ) const
inline

Check if it is safe to call GetResidue_graph method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 341 of file Residue_.hpp.

◆ CanGetResidue_graph_id() [1/2]

bool CBiostruc_residue_graph_set_pntr_Base::CanGetResidue_graph_id ( void  ) const
inline

Check if it is safe to call GetResidue_graph_id method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 238 of file Biost_resid_graph_set_pntr_.hpp.

References CBiostruc_residue_graph_set_pntr_Base::IsSetResidue_graph_id().

Referenced by CBiostruc_residue_graph_set_pntr_Base::GetResidue_graph_id().

◆ CanGetResidue_graph_id() [2/2]

bool CBiostruc_graph_pntr_Base::CanGetResidue_graph_id ( void  ) const
inline

Check if it is safe to call GetResidue_graph_id method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 238 of file Biostruc_graph_pntr_.hpp.

References CBiostruc_graph_pntr_Base::IsSetResidue_graph_id().

Referenced by CBiostruc_graph_pntr_Base::GetResidue_graph_id().

◆ CanGetResidue_graphs()

bool CBiostruc_graph_Base::CanGetResidue_graphs ( void  ) const
inline

Check if it is safe to call GetResidue_graphs method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 356 of file Biostruc_graph_.hpp.

◆ CanGetResidue_id()

bool CAtom_pntr_Base::CanGetResidue_id ( void  ) const
inline

Check if it is safe to call GetResidue_id method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 290 of file Atom_pntr_.hpp.

References CAtom_pntr_Base::IsSetResidue_id().

Referenced by CAtom_pntr_Base::GetResidue_id().

◆ CanGetResidue_sequence()

bool CMolecule_graph_Base::CanGetResidue_sequence ( void  ) const
inline

Check if it is safe to call GetResidue_sequence method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 471 of file Molecule_graph_.hpp.

◆ CanGetResidue_type()

bool CResidue_graph_Base::CanGetResidue_type ( void  ) const
inline

Check if it is safe to call GetResidue_type method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 473 of file Residue_graph_.hpp.

References CResidue_graph_Base::IsSetResidue_type().

Referenced by CResidue_graph_Base::GetResidue_type().

◆ CanGetSeq_id()

bool CMolecule_graph_Base::CanGetSeq_id ( void  ) const
inline

Check if it is safe to call GetSeq_id method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 450 of file Molecule_graph_.hpp.

References CMolecule_graph_Base::IsSetSeq_id().

Referenced by CMolecule_graph_Base::GetSeq_id().

◆ CanGetSid()

bool CMolecule_graph_Base::CanGetSid ( void  ) const
inline

Check if it is safe to call GetSid method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 521 of file Molecule_graph_.hpp.

References CMolecule_graph_Base::IsSetSid().

Referenced by CMolecule_graph_Base::GetSid().

◆ CanGetSign()

bool CChiral_center_Base::CanGetSign ( void  ) const
inline

Check if it is safe to call GetSign method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 510 of file Chiral_center_.hpp.

References CChiral_center_Base::IsSetSign().

Referenced by CChiral_center_Base::GetSign().

◆ CAtom() [1/2]

CAtom::CAtom ( const CAtom value)
private

◆ CAtom() [2/2]

CAtom::CAtom ( void  )
inline

Definition at line 86 of file Atom.hpp.

◆ CAtom_Base() [1/2]

CAtom_Base::CAtom_Base ( const CAtom_Base )
private

◆ CAtom_Base() [2/2]

END_CLASS_INFO CAtom_Base::CAtom_Base ( void  )

Definition at line 208 of file Atom_.cpp.

References CAtom_Base::m_set_State.

◆ CAtom_id() [1/2]

CAtom_id::CAtom_id ( const int value)
inlineexplicit

Explicit constructor from the primitive type.

Definition at line 72 of file Atom_id.hpp.

◆ CAtom_id() [2/2]

CAtom_id::CAtom_id ( void  )
inline

Definition at line 69 of file Atom_id.hpp.

◆ CAtom_id_Base() [1/2]

CAtom_id_Base::CAtom_id_Base ( const int data)
inlineexplicit

Definition at line 96 of file Atom_id_.hpp.

◆ CAtom_id_Base() [2/2]

CAtom_id_Base::CAtom_id_Base ( void  )
inline

Definition at line 91 of file Atom_id_.hpp.

◆ CAtom_pntr() [1/2]

CAtom_pntr::CAtom_pntr ( const CAtom_pntr value)
private

◆ CAtom_pntr() [2/2]

CAtom_pntr::CAtom_pntr ( void  )
inline

Definition at line 86 of file Atom_pntr.hpp.

◆ CAtom_pntr_Base() [1/2]

CAtom_pntr_Base::CAtom_pntr_Base ( const CAtom_pntr_Base )
private

◆ CAtom_pntr_Base() [2/2]

END_CLASS_INFO CAtom_pntr_Base::CAtom_pntr_Base ( void  )

Definition at line 70 of file Atom_pntr_.cpp.

References CAtom_pntr_Base::m_set_State.

◆ CAtom_pntr_set() [1/2]

CAtom_pntr_set::CAtom_pntr_set ( const CAtom_pntr_set value)
private

◆ CAtom_pntr_set() [2/2]

CAtom_pntr_set::CAtom_pntr_set ( void  )
inline

Definition at line 86 of file Atom_pntr_set.hpp.

◆ CAtom_pntr_set_Base() [1/2]

CAtom_pntr_set_Base::CAtom_pntr_set_Base ( const CAtom_pntr_set_Base )
private

◆ CAtom_pntr_set_Base() [2/2]

END_CLASS_INFO CAtom_pntr_set_Base::CAtom_pntr_set_Base ( void  )

Definition at line 68 of file Atom_pntr_set_.cpp.

References CAtom_pntr_set_Base::m_set_State.

◆ CBiomol_descr() [1/2]

CBiomol_descr::CBiomol_descr ( const CBiomol_descr value)
private

◆ CBiomol_descr() [2/2]

CBiomol_descr::CBiomol_descr ( void  )
inline

Definition at line 86 of file Biomol_descr.hpp.

◆ CBiomol_descr_Base() [1/2]

CBiomol_descr_Base::CBiomol_descr_Base ( const CBiomol_descr_Base )
private

◆ CBiomol_descr_Base() [2/2]

END_CHOICE_INFO CBiomol_descr_Base::CBiomol_descr_Base ( void  )

Definition at line 248 of file Biomol_descr_.cpp.

◆ CBiostruc_graph() [1/2]

CBiostruc_graph::CBiostruc_graph ( const CBiostruc_graph value)
private

◆ CBiostruc_graph() [2/2]

CBiostruc_graph::CBiostruc_graph ( void  )
inline

Definition at line 86 of file Biostruc_graph.hpp.

◆ CBiostruc_graph_Base() [1/2]

CBiostruc_graph_Base::CBiostruc_graph_Base ( const CBiostruc_graph_Base )
private

◆ CBiostruc_graph_Base() [2/2]

END_CLASS_INFO CBiostruc_graph_Base::CBiostruc_graph_Base ( void  )

Definition at line 100 of file Biostruc_graph_.cpp.

References CBiostruc_graph_Base::m_set_State.

◆ CBiostruc_graph_pntr() [1/2]

CBiostruc_graph_pntr::CBiostruc_graph_pntr ( const CBiostruc_graph_pntr value)
private

◆ CBiostruc_graph_pntr() [2/2]

CBiostruc_graph_pntr::CBiostruc_graph_pntr ( void  )
inline

Definition at line 86 of file Biostruc_graph_pntr.hpp.

◆ CBiostruc_graph_pntr_Base() [1/2]

CBiostruc_graph_pntr_Base::CBiostruc_graph_pntr_Base ( const CBiostruc_graph_pntr_Base )
private

◆ CBiostruc_graph_pntr_Base() [2/2]

END_CLASS_INFO CBiostruc_graph_pntr_Base::CBiostruc_graph_pntr_Base ( void  )

◆ CBiostruc_residue_graph_set_pntr() [1/2]

CBiostruc_residue_graph_set_pntr::CBiostruc_residue_graph_set_pntr ( const CBiostruc_residue_graph_set_pntr value)
private

◆ CBiostruc_residue_graph_set_pntr() [2/2]

CBiostruc_residue_graph_set_pntr::CBiostruc_residue_graph_set_pntr ( void  )
inline

Definition at line 86 of file Biost_resid_graph_set_pntr.hpp.

◆ CBiostruc_residue_graph_set_pntr_Base() [1/2]

CBiostruc_residue_graph_set_pntr_Base::CBiostruc_residue_graph_set_pntr_Base ( const CBiostruc_residue_graph_set_pntr_Base )
private

◆ CBiostruc_residue_graph_set_pntr_Base() [2/2]

END_CLASS_INFO CBiostruc_residue_graph_set_pntr_Base::CBiostruc_residue_graph_set_pntr_Base ( void  )

◆ CChiral_center() [1/2]

CChiral_center::CChiral_center ( const CChiral_center value)
private

◆ CChiral_center() [2/2]

CChiral_center::CChiral_center ( void  )
inline

Definition at line 86 of file Chiral_center.hpp.

◆ CChiral_center_Base() [1/2]

CChiral_center_Base::CChiral_center_Base ( const CChiral_center_Base )
private

◆ CChiral_center_Base() [2/2]

END_CLASS_INFO CChiral_center_Base::CChiral_center_Base ( void  )

Definition at line 83 of file Chiral_center_.cpp.

References CChiral_center_Base::m_set_State.

◆ CheckSelected() [1/2]

void CBiomol_descr_Base::CheckSelected ( E_Choice  index) const
inline

◆ CheckSelected() [2/2]

void CResidue_graph_pntr_Base::CheckSelected ( E_Choice  index) const
inline

Verify selection, throw exception if it differs from the expected.

Parameters
indexExpected selection.

Definition at line 274 of file Residue_graph_pntr_.hpp.

References CResidue_graph_pntr_Base::m_choice, and CResidue_graph_pntr_Base::ThrowInvalidSelection().

Referenced by CResidue_graph_pntr_Base::GetBiostruc(), CResidue_graph_pntr_Base::GetLocal(), and CResidue_graph_pntr_Base::GetStandard().

◆ CInter_residue_bond() [1/2]

CInter_residue_bond::CInter_residue_bond ( const CInter_residue_bond value)
private

◆ CInter_residue_bond() [2/2]

CInter_residue_bond::CInter_residue_bond ( void  )
inline

Definition at line 86 of file Inter_residue_bond.hpp.

◆ CInter_residue_bond_Base() [1/2]

CInter_residue_bond_Base::CInter_residue_bond_Base ( const CInter_residue_bond_Base )
private

◆ CInter_residue_bond_Base() [2/2]

END_CLASS_INFO CInter_residue_bond_Base::CInter_residue_bond_Base ( void  )

◆ CIntra_residue_bond() [1/2]

CIntra_residue_bond::CIntra_residue_bond ( const CIntra_residue_bond value)
private

◆ CIntra_residue_bond() [2/2]

CIntra_residue_bond::CIntra_residue_bond ( void  )
inline

Definition at line 86 of file Intra_residue_bond.hpp.

◆ CIntra_residue_bond_Base() [1/2]

CIntra_residue_bond_Base::CIntra_residue_bond_Base ( const CIntra_residue_bond_Base )
private

◆ CIntra_residue_bond_Base() [2/2]

END_CLASS_INFO CIntra_residue_bond_Base::CIntra_residue_bond_Base ( void  )

Definition at line 84 of file Intra_residue_bond_.cpp.

References CIntra_residue_bond_Base::m_set_State.

◆ CMolecule_graph() [1/2]

CMolecule_graph::CMolecule_graph ( const CMolecule_graph value)
private

◆ CMolecule_graph() [2/2]

CMolecule_graph::CMolecule_graph ( void  )
inline

Definition at line 86 of file Molecule_graph.hpp.

◆ CMolecule_graph_Base() [1/2]

CMolecule_graph_Base::CMolecule_graph_Base ( const CMolecule_graph_Base )
private

◆ CMolecule_graph_Base() [2/2]

END_CLASS_INFO CMolecule_graph_Base::CMolecule_graph_Base ( void  )

Definition at line 115 of file Molecule_graph_.cpp.

References CMolecule_graph_Base::m_set_State.

◆ CMolecule_id() [1/2]

CMolecule_id::CMolecule_id ( const int value)
inlineexplicit

Explicit constructor from the primitive type.

Definition at line 72 of file Molecule_id.hpp.

◆ CMolecule_id() [2/2]

CMolecule_id::CMolecule_id ( void  )
inline

Definition at line 69 of file Molecule_id.hpp.

◆ CMolecule_id_Base() [1/2]

CMolecule_id_Base::CMolecule_id_Base ( const int data)
inlineexplicit

Definition at line 96 of file Molecule_id_.hpp.

◆ CMolecule_id_Base() [2/2]

CMolecule_id_Base::CMolecule_id_Base ( void  )
inline

Definition at line 91 of file Molecule_id_.hpp.

◆ CPCSubstance_id() [1/2]

CPCSubstance_id::CPCSubstance_id ( const int value)
inlineexplicit

Explicit constructor from the primitive type.

Definition at line 72 of file PCSubstance_id.hpp.

◆ CPCSubstance_id() [2/2]

CPCSubstance_id::CPCSubstance_id ( void  )
inline

Definition at line 69 of file PCSubstance_id.hpp.

◆ CPCSubstance_id_Base() [1/2]

CPCSubstance_id_Base::CPCSubstance_id_Base ( const int data)
inlineexplicit

Definition at line 97 of file PCSubstance_id_.hpp.

◆ CPCSubstance_id_Base() [2/2]

CPCSubstance_id_Base::CPCSubstance_id_Base ( void  )
inline

Definition at line 92 of file PCSubstance_id_.hpp.

◆ CResidue() [1/2]

CResidue::CResidue ( const CResidue value)
private

◆ CResidue() [2/2]

CResidue::CResidue ( void  )
inline

Definition at line 86 of file Residue.hpp.

◆ CResidue_Base() [1/2]

CResidue_Base::CResidue_Base ( const CResidue_Base )
private

◆ CResidue_Base() [2/2]

END_CLASS_INFO CResidue_Base::CResidue_Base ( void  )

◆ CResidue_graph() [1/2]

CResidue_graph::CResidue_graph ( const CResidue_graph value)
private

◆ CResidue_graph() [2/2]

CResidue_graph::CResidue_graph ( void  )
inline

Definition at line 86 of file Residue_graph.hpp.

◆ CResidue_graph_Base() [1/2]

CResidue_graph_Base::CResidue_graph_Base ( const CResidue_graph_Base )
private

◆ CResidue_graph_Base() [2/2]

END_CLASS_INFO CResidue_graph_Base::CResidue_graph_Base ( void  )

Definition at line 123 of file Residue_graph_.cpp.

References CResidue_graph_Base::m_set_State.

◆ CResidue_graph_id() [1/2]

CResidue_graph_id::CResidue_graph_id ( const int value)
inlineexplicit

Explicit constructor from the primitive type.

Definition at line 72 of file Residue_graph_id.hpp.

◆ CResidue_graph_id() [2/2]

CResidue_graph_id::CResidue_graph_id ( void  )
inline

Definition at line 69 of file Residue_graph_id.hpp.

◆ CResidue_graph_id_Base() [1/2]

CResidue_graph_id_Base::CResidue_graph_id_Base ( const int data)
inlineexplicit

Definition at line 96 of file Residue_graph_id_.hpp.

◆ CResidue_graph_id_Base() [2/2]

CResidue_graph_id_Base::CResidue_graph_id_Base ( void  )
inline

Definition at line 91 of file Residue_graph_id_.hpp.

◆ CResidue_graph_pntr() [1/2]

CResidue_graph_pntr::CResidue_graph_pntr ( const CResidue_graph_pntr value)
private

◆ CResidue_graph_pntr() [2/2]

CResidue_graph_pntr::CResidue_graph_pntr ( void  )
inline

Definition at line 86 of file Residue_graph_pntr.hpp.

◆ CResidue_graph_pntr_Base() [1/2]

CResidue_graph_pntr_Base::CResidue_graph_pntr_Base ( const CResidue_graph_pntr_Base )
private

◆ CResidue_graph_pntr_Base() [2/2]

END_CHOICE_INFO CResidue_graph_pntr_Base::CResidue_graph_pntr_Base ( void  )

Definition at line 174 of file Residue_graph_pntr_.cpp.

◆ CResidue_id() [1/2]

CResidue_id::CResidue_id ( const int value)
inlineexplicit

Explicit constructor from the primitive type.

Definition at line 72 of file Residue_id.hpp.

◆ CResidue_id() [2/2]

CResidue_id::CResidue_id ( void  )
inline

Definition at line 69 of file Residue_id.hpp.

◆ CResidue_id_Base() [1/2]

CResidue_id_Base::CResidue_id_Base ( const int data)
inlineexplicit

Definition at line 96 of file Residue_id_.hpp.

◆ CResidue_id_Base() [2/2]

CResidue_id_Base::CResidue_id_Base ( void  )
inline

Definition at line 91 of file Residue_id_.hpp.

◆ DECLARE_INTERNAL_TYPE_INFO() [1/14]

CAtom_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [2/14]

CAtom_pntr_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [3/14]

CAtom_pntr_set_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [4/14]

CBiomol_descr_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [5/14]

CBiostruc_residue_graph_set_pntr_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [6/14]

CBiostruc_graph_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [7/14]

CBiostruc_graph_pntr_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [8/14]

CChiral_center_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [9/14]

CInter_residue_bond_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [10/14]

CIntra_residue_bond_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [11/14]

CMolecule_graph_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [12/14]

CResidue_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [13/14]

CResidue_graph_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [14/14]

CResidue_graph_pntr_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_STD_ALIAS_TYPE_INFO() [1/5]

CAtom_id_Base::DECLARE_STD_ALIAS_TYPE_INFO ( )

◆ DECLARE_STD_ALIAS_TYPE_INFO() [2/5]

CMolecule_id_Base::DECLARE_STD_ALIAS_TYPE_INFO ( )

◆ DECLARE_STD_ALIAS_TYPE_INFO() [3/5]

CPCSubstance_id_Base::DECLARE_STD_ALIAS_TYPE_INFO ( )

◆ DECLARE_STD_ALIAS_TYPE_INFO() [4/5]

CResidue_graph_id_Base::DECLARE_STD_ALIAS_TYPE_INFO ( )

◆ DECLARE_STD_ALIAS_TYPE_INFO() [5/5]

CResidue_id_Base::DECLARE_STD_ALIAS_TYPE_INFO ( )

◆ DoSelect() [1/2]

void CBiomol_descr_Base::DoSelect ( E_Choice  index,
CObjectMemoryPool pool = 0 
)
private

◆ DoSelect() [2/2]

void CResidue_graph_pntr_Base::DoSelect ( E_Choice  index,
CObjectMemoryPool pool = 0 
)
private

◆ EAssembly_type()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CBiomol_descr_Base::EAssembly_type ( void  )
static

Access to EAssembly_type's attributes (values, names) as defined in spec.

◆ EBond_order() [1/2]

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CInter_residue_bond_Base::EBond_order ( void  )
static

Access to EBond_order's attributes (values, names) as defined in spec.

◆ EBond_order() [2/2]

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CIntra_residue_bond_Base::EBond_order ( void  )
static

Access to EBond_order's attributes (values, names) as defined in spec.

◆ EElement()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CAtom_Base::EElement ( void  )
static

Access to EElement's attributes (values, names) as defined in spec.

◆ EIonizable_proton()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CAtom_Base::EIonizable_proton ( void  )
static

Access to EIonizable_proton's attributes (values, names) as defined in spec.

◆ EMolecule_type()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CBiomol_descr_Base::EMolecule_type ( void  )
static

Access to EMolecule_type's attributes (values, names) as defined in spec.

◆ EResidue_type()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CResidue_graph_Base::EResidue_type ( void  )
static

Access to EResidue_type's attributes (values, names) as defined in spec.

◆ ESign()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CChiral_center_Base::ESign ( void  )
static

Access to ESign's attributes (values, names) as defined in spec.

◆ Get()

const CAtom_pntr_set_Base::Tdata & CAtom_pntr_set_Base::Get ( void  ) const
inline

Get the member data.

Returns
Reference to the member data.

Definition at line 164 of file Atom_pntr_set_.hpp.

References CAtom_pntr_set_Base::m_data.

◆ GetAssembly_type()

CBiomol_descr_Base::TAssembly_type CBiomol_descr_Base::GetAssembly_type ( void  ) const
inline

Get the variant data.

Returns
Copy of the variant data.

Definition at line 614 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::CheckSelected(), CBiomol_descr_Base::e_Assembly_type, and CBiomol_descr_Base::m_Assembly_type.

◆ GetAtom_id()

const CAtom_pntr_Base::TAtom_id & CAtom_pntr_Base::GetAtom_id ( void  ) const
inline

Get the Atom_id member data.

Returns
Reference to the member data.

Definition at line 345 of file Atom_pntr_.hpp.

References CAtom_pntr_Base::CanGetAtom_id(), CAtom_pntr_Base::m_Atom_id, and CSerialObject::ThrowUnassigned().

Referenced by ChemicalGraph::CheckForDisulfide(), and MakeBond().

◆ GetAtom_id_1() [1/2]

const CInter_residue_bond_Base::TAtom_id_1 & CInter_residue_bond_Base::GetAtom_id_1 ( void  ) const
inline

Get the Atom_id_1 member data.

Returns
Reference to the member data.

Definition at line 269 of file Inter_residue_bond_.hpp.

References CInter_residue_bond_Base::m_Atom_id_1, and CInter_residue_bond_Base::ResetAtom_id_1().

◆ GetAtom_id_1() [2/2]

const CIntra_residue_bond_Base::TAtom_id_1 & CIntra_residue_bond_Base::GetAtom_id_1 ( void  ) const
inline

Get the Atom_id_1 member data.

Returns
Reference to the member data.

Definition at line 280 of file Intra_residue_bond_.hpp.

References CIntra_residue_bond_Base::CanGetAtom_id_1(), CIntra_residue_bond_Base::m_Atom_id_1, and CSerialObject::ThrowUnassigned().

◆ GetAtom_id_2() [1/2]

const CInter_residue_bond_Base::TAtom_id_2 & CInter_residue_bond_Base::GetAtom_id_2 ( void  ) const
inline

Get the Atom_id_2 member data.

Returns
Reference to the member data.

Definition at line 299 of file Inter_residue_bond_.hpp.

References CInter_residue_bond_Base::m_Atom_id_2, and CInter_residue_bond_Base::ResetAtom_id_2().

◆ GetAtom_id_2() [2/2]

const CIntra_residue_bond_Base::TAtom_id_2 & CIntra_residue_bond_Base::GetAtom_id_2 ( void  ) const
inline

Get the Atom_id_2 member data.

Returns
Reference to the member data.

Definition at line 322 of file Intra_residue_bond_.hpp.

References CIntra_residue_bond_Base::CanGetAtom_id_2(), CIntra_residue_bond_Base::m_Atom_id_2, and CSerialObject::ThrowUnassigned().

◆ GetAtoms()

const CResidue_graph_Base::TAtoms & CResidue_graph_Base::GetAtoms ( void  ) const
inline

Get the Atoms member data.

Returns
Reference to the member data.

Definition at line 551 of file Residue_graph_.hpp.

References CResidue_graph_Base::m_Atoms.

Referenced by Residue::Residue().

◆ GetAttribution()

const CBiomol_descr_Base::TAttribution & CBiomol_descr_Base::GetAttribution ( void  ) const

Get the variant data.

Returns
Reference to the data.

Definition at line 205 of file Biomol_descr_.cpp.

References CBiomol_descr_Base::CheckSelected(), CBiomol_descr_Base::e_Attribution, and CBiomol_descr_Base::m_object.

◆ GetBiostruc()

const CResidue_graph_pntr_Base::TBiostruc & CResidue_graph_pntr_Base::GetBiostruc ( void  ) const

Get the variant data.

Returns
Reference to the data.

Definition at line 115 of file Residue_graph_pntr_.cpp.

References CResidue_graph_pntr_Base::CheckSelected(), CResidue_graph_pntr_Base::e_Biostruc, and CResidue_graph_pntr_Base::m_object.

◆ GetBiostruc_id()

const CBiostruc_graph_pntr_Base::TBiostruc_id & CBiostruc_graph_pntr_Base::GetBiostruc_id ( void  ) const
inline

Get the Biostruc_id member data.

Returns
Reference to the member data.

Definition at line 214 of file Biostruc_graph_pntr_.hpp.

References CBiostruc_graph_pntr_Base::m_Biostruc_id, and CBiostruc_graph_pntr_Base::ResetBiostruc_id().

◆ GetBiostruc_residue_graph_set_id()

const CBiostruc_residue_graph_set_pntr_Base::TBiostruc_residue_graph_set_id & CBiostruc_residue_graph_set_pntr_Base::GetBiostruc_residue_graph_set_id ( void  ) const
inline

Get the Biostruc_residue_graph_set_id member data.

Returns
Reference to the member data.

Definition at line 214 of file Biost_resid_graph_set_pntr_.hpp.

References CBiostruc_residue_graph_set_pntr_Base::m_Biostruc_residue_graph_set_id, and CBiostruc_residue_graph_set_pntr_Base::ResetBiostruc_residue_graph_set_id().

Referenced by Residue::Residue().

◆ GetBond_order() [1/2]

CInter_residue_bond_Base::TBond_order CInter_residue_bond_Base::GetBond_order ( void  ) const
inline

Get the Bond_order member data.

Returns
Copy of the member data.

Definition at line 336 of file Inter_residue_bond_.hpp.

References CInter_residue_bond_Base::CanGetBond_order(), CInter_residue_bond_Base::m_Bond_order, and CSerialObject::ThrowUnassigned().

◆ GetBond_order() [2/2]

CIntra_residue_bond_Base::TBond_order CIntra_residue_bond_Base::GetBond_order ( void  ) const
inline

Get the Bond_order member data.

Returns
Copy of the member data.

Definition at line 364 of file Intra_residue_bond_.hpp.

References CIntra_residue_bond_Base::CanGetBond_order(), CIntra_residue_bond_Base::m_Bond_order, and CSerialObject::ThrowUnassigned().

◆ GetBonds()

const CResidue_graph_Base::TBonds & CResidue_graph_Base::GetBonds ( void  ) const
inline

Get the Bonds member data.

Returns
Reference to the member data.

Definition at line 576 of file Residue_graph_.hpp.

References CResidue_graph_Base::m_Bonds.

Referenced by Residue::Residue().

◆ GetC()

const CChiral_center_Base::TC & CChiral_center_Base::GetC ( void  ) const
inline

Get the C member data.

Returns
Reference to the member data.

Definition at line 355 of file Chiral_center_.hpp.

References CChiral_center_Base::CanGetC(), CChiral_center_Base::m_C, and CSerialObject::ThrowUnassigned().

◆ GetChiral_centers()

const CResidue_graph_Base::TChiral_centers & CResidue_graph_Base::GetChiral_centers ( void  ) const
inline

Get the Chiral_centers member data.

Returns
Reference to the member data.

Definition at line 601 of file Residue_graph_.hpp.

References CResidue_graph_Base::m_Chiral_centers.

◆ GetDescr() [1/3]

const CBiostruc_graph_Base::TDescr & CBiostruc_graph_Base::GetDescr ( void  ) const
inline

Get the Descr member data.

Returns
Reference to the member data.

Definition at line 287 of file Biostruc_graph_.hpp.

References CBiostruc_graph_Base::m_Descr.

Referenced by ChemicalGraph::ChemicalGraph().

◆ GetDescr() [2/3]

const CMolecule_graph_Base::TDescr & CMolecule_graph_Base::GetDescr ( void  ) const
inline

Get the Descr member data.

Returns
Reference to the member data.

Definition at line 431 of file Molecule_graph_.hpp.

References CMolecule_graph_Base::m_Descr.

Referenced by Molecule::Molecule().

◆ GetDescr() [3/3]

const CResidue_graph_Base::TDescr & CResidue_graph_Base::GetDescr ( void  ) const
inline

Get the Descr member data.

Returns
Reference to the member data.

Definition at line 454 of file Residue_graph_.hpp.

References CResidue_graph_Base::m_Descr.

Referenced by Residue::Residue().

◆ GetElement()

CAtom_Base::TElement CAtom_Base::GetElement ( void  ) const
inline

Get the Element member data.

Returns
Copy of the member data.

Definition at line 578 of file Atom_.hpp.

References CAtom_Base::CanGetElement(), CAtom_Base::m_Element, and CSerialObject::ThrowUnassigned().

Referenced by ClassifyAtom(), and Residue::Residue().

◆ GetId() [1/4]

const CAtom_Base::TId & CAtom_Base::GetId ( void  ) const
inline

Get the Id member data.

Returns
Reference to the member data.

Definition at line 464 of file Atom_.hpp.

References CAtom_Base::CanGetId(), CAtom_Base::m_Id, and CSerialObject::ThrowUnassigned().

Referenced by Residue::Residue().

◆ GetId() [2/4]

const CMolecule_graph_Base::TId & CMolecule_graph_Base::GetId ( void  ) const
inline

Get the Id member data.

Returns
Reference to the member data.

Definition at line 396 of file Molecule_graph_.hpp.

References CMolecule_graph_Base::CanGetId(), CMolecule_graph_Base::m_Id, and CSerialObject::ThrowUnassigned().

Referenced by Molecule::Molecule().

◆ GetId() [3/4]

const CResidue_Base::TId & CResidue_Base::GetId ( void  ) const
inline

Get the Id member data.

Returns
Reference to the member data.

Definition at line 265 of file Residue_.hpp.

References CResidue_Base::CanGetId(), CResidue_Base::m_Id, and CSerialObject::ThrowUnassigned().

Referenced by Residue::Residue().

◆ GetId() [4/4]

const CResidue_graph_Base::TId & CResidue_graph_Base::GetId ( void  ) const
inline

Get the Id member data.

Returns
Reference to the member data.

Definition at line 419 of file Residue_graph_.hpp.

References CResidue_graph_Base::CanGetId(), CResidue_graph_Base::m_Id, and CSerialObject::ThrowUnassigned().

◆ GetInter_molecule_bonds()

const CBiostruc_graph_Base::TInter_molecule_bonds & CBiostruc_graph_Base::GetInter_molecule_bonds ( void  ) const
inline

Get the Inter_molecule_bonds member data.

Returns
Reference to the member data.

Definition at line 337 of file Biostruc_graph_.hpp.

References CBiostruc_graph_Base::m_Inter_molecule_bonds.

Referenced by ChemicalGraph::ChemicalGraph().

◆ GetInter_residue_bonds()

const CMolecule_graph_Base::TInter_residue_bonds & CMolecule_graph_Base::GetInter_residue_bonds ( void  ) const
inline

Get the Inter_residue_bonds member data.

Returns
Reference to the member data.

Definition at line 502 of file Molecule_graph_.hpp.

References CMolecule_graph_Base::m_Inter_residue_bonds.

Referenced by Molecule::Molecule().

◆ GetIonizable_proton()

CAtom_Base::TIonizable_proton CAtom_Base::GetIonizable_proton ( void  ) const
inline

Get the Ionizable_proton member data.

Returns
Copy of the member data.

Definition at line 625 of file Atom_.hpp.

References CAtom_Base::CanGetIonizable_proton(), CAtom_Base::m_Ionizable_proton, and CSerialObject::ThrowUnassigned().

Referenced by Residue::Residue().

◆ GetIupac_code() [1/2]

const CAtom_Base::TIupac_code & CAtom_Base::GetIupac_code ( void  ) const
inline

Get the Iupac_code member data.

Returns
Reference to the member data.

Definition at line 546 of file Atom_.hpp.

References CAtom_Base::m_Iupac_code.

Referenced by ClassifyAtom(), and Residue::Residue().

◆ GetIupac_code() [2/2]

const CResidue_graph_Base::TIupac_code & CResidue_graph_Base::GetIupac_code ( void  ) const
inline

Get the Iupac_code member data.

Returns
Reference to the member data.

Definition at line 526 of file Residue_graph_.hpp.

References CResidue_graph_Base::m_Iupac_code.

Referenced by Residue::Residue().

◆ GetLocal()

const CResidue_graph_pntr_Base::TLocal & CResidue_graph_pntr_Base::GetLocal ( void  ) const
inline

Get the variant data.

Returns
Reference to the data.

Definition at line 303 of file Residue_graph_pntr_.hpp.

References CResidue_graph_pntr_Base::CheckSelected(), CResidue_graph_pntr_Base::e_Local, and CResidue_graph_pntr_Base::m_Local.

Referenced by Residue::Residue().

◆ GetMolecule_graphs()

const CBiostruc_graph_Base::TMolecule_graphs & CBiostruc_graph_Base::GetMolecule_graphs ( void  ) const
inline

Get the Molecule_graphs member data.

Returns
Reference to the member data.

Definition at line 312 of file Biostruc_graph_.hpp.

References CBiostruc_graph_Base::m_Molecule_graphs.

Referenced by ChemicalGraph::ChemicalGraph(), CreateMimeFromBiostruc(), and UpdateViewer::ImportStructure().

◆ GetMolecule_id()

const CAtom_pntr_Base::TMolecule_id & CAtom_pntr_Base::GetMolecule_id ( void  ) const
inline

Get the Molecule_id member data.

Returns
Reference to the member data.

Definition at line 261 of file Atom_pntr_.hpp.

References CAtom_pntr_Base::CanGetMolecule_id(), CAtom_pntr_Base::m_Molecule_id, and CSerialObject::ThrowUnassigned().

Referenced by ChemicalGraph::CheckForDisulfide(), and MakeBond().

◆ GetMolecule_type()

CBiomol_descr_Base::TMolecule_type CBiomol_descr_Base::GetMolecule_type ( void  ) const
inline

Get the variant data.

Returns
Copy of the variant data.

Definition at line 641 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::CheckSelected(), CBiomol_descr_Base::e_Molecule_type, and CBiomol_descr_Base::m_Molecule_type.

◆ GetN1()

const CChiral_center_Base::TN1 & CChiral_center_Base::GetN1 ( void  ) const
inline

Get the N1 member data.

Returns
Reference to the member data.

Definition at line 397 of file Chiral_center_.hpp.

References CChiral_center_Base::CanGetN1(), CChiral_center_Base::m_N1, and CSerialObject::ThrowUnassigned().

◆ GetN2()

const CChiral_center_Base::TN2 & CChiral_center_Base::GetN2 ( void  ) const
inline

Get the N2 member data.

Returns
Reference to the member data.

Definition at line 439 of file Chiral_center_.hpp.

References CChiral_center_Base::CanGetN2(), CChiral_center_Base::m_N2, and CSerialObject::ThrowUnassigned().

◆ GetN3()

const CChiral_center_Base::TN3 & CChiral_center_Base::GetN3 ( void  ) const
inline

Get the N3 member data.

Returns
Reference to the member data.

Definition at line 481 of file Chiral_center_.hpp.

References CChiral_center_Base::CanGetN3(), CChiral_center_Base::m_N3, and CSerialObject::ThrowUnassigned().

◆ GetName() [1/3]

const CAtom_Base::TName & CAtom_Base::GetName ( void  ) const
inline

Get the Name member data.

Returns
Reference to the member data.

Definition at line 499 of file Atom_.hpp.

References CAtom_Base::CanGetName(), CAtom_Base::m_Name, and CSerialObject::ThrowUnassigned().

Referenced by Residue::Residue().

◆ GetName() [2/3]

const CBiomol_descr_Base::TName & CBiomol_descr_Base::GetName ( void  ) const
inline

Get the variant data.

Returns
Reference to the data.

Definition at line 502 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::CheckSelected(), CBiomol_descr_Base::e_Name, and CBiomol_descr_Base::m_string.

◆ GetName() [3/3]

const CResidue_Base::TName & CResidue_Base::GetName ( void  ) const
inline

Get the Name member data.

Returns
Reference to the member data.

Definition at line 300 of file Residue_.hpp.

References CResidue_Base::CanGetName(), CResidue_Base::m_Name, and CSerialObject::ThrowUnassigned().

Referenced by Residue::Residue().

◆ GetOrganism()

const CBiomol_descr_Base::TOrganism & CBiomol_descr_Base::GetOrganism ( void  ) const

Get the variant data.

Returns
Reference to the data.

Definition at line 183 of file Biomol_descr_.cpp.

References CBiomol_descr_Base::CheckSelected(), CBiomol_descr_Base::e_Organism, and CBiomol_descr_Base::m_object.

◆ GetOther_comment()

const CBiomol_descr_Base::TOther_comment & CBiomol_descr_Base::GetOther_comment ( void  ) const
inline

Get the variant data.

Returns
Reference to the data.

Definition at line 582 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::CheckSelected(), CBiomol_descr_Base::e_Other_comment, and CBiomol_descr_Base::m_string.

◆ GetPdb_class()

const CBiomol_descr_Base::TPdb_class & CBiomol_descr_Base::GetPdb_class ( void  ) const
inline

Get the variant data.

Returns
Reference to the data.

Definition at line 522 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::CheckSelected(), CBiomol_descr_Base::e_Pdb_class, and CBiomol_descr_Base::m_string.

◆ GetPdb_comment()

const CBiomol_descr_Base::TPdb_comment & CBiomol_descr_Base::GetPdb_comment ( void  ) const
inline

Get the variant data.

Returns
Reference to the data.

Definition at line 562 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::CheckSelected(), CBiomol_descr_Base::e_Pdb_comment, and CBiomol_descr_Base::m_string.

◆ GetPdb_source()

const CBiomol_descr_Base::TPdb_source & CBiomol_descr_Base::GetPdb_source ( void  ) const
inline

Get the variant data.

Returns
Reference to the data.

Definition at line 542 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::CheckSelected(), CBiomol_descr_Base::e_Pdb_source, and CBiomol_descr_Base::m_string.

◆ GetResidue_graph()

const CResidue_Base::TResidue_graph & CResidue_Base::GetResidue_graph ( void  ) const
inline

Get the Residue_graph member data.

Returns
Reference to the member data.

Definition at line 347 of file Residue_.hpp.

References CResidue_Base::m_Residue_graph, and CResidue_Base::ResetResidue_graph().

Referenced by Residue::Residue().

◆ GetResidue_graph_id() [1/2]

const CBiostruc_residue_graph_set_pntr_Base::TResidue_graph_id & CBiostruc_residue_graph_set_pntr_Base::GetResidue_graph_id ( void  ) const
inline

Get the Residue_graph_id member data.

Returns
Reference to the member data.

Definition at line 251 of file Biost_resid_graph_set_pntr_.hpp.

References CBiostruc_residue_graph_set_pntr_Base::CanGetResidue_graph_id(), CBiostruc_residue_graph_set_pntr_Base::m_Residue_graph_id, and CSerialObject::ThrowUnassigned().

Referenced by Residue::Residue().

◆ GetResidue_graph_id() [2/2]

const CBiostruc_graph_pntr_Base::TResidue_graph_id & CBiostruc_graph_pntr_Base::GetResidue_graph_id ( void  ) const
inline

Get the Residue_graph_id member data.

Returns
Reference to the member data.

Definition at line 251 of file Biostruc_graph_pntr_.hpp.

References CBiostruc_graph_pntr_Base::CanGetResidue_graph_id(), CBiostruc_graph_pntr_Base::m_Residue_graph_id, and CSerialObject::ThrowUnassigned().

◆ GetResidue_graphs()

const CBiostruc_graph_Base::TResidue_graphs & CBiostruc_graph_Base::GetResidue_graphs ( void  ) const
inline

Get the Residue_graphs member data.

Returns
Reference to the member data.

Definition at line 362 of file Biostruc_graph_.hpp.

References CBiostruc_graph_Base::m_Residue_graphs.

Referenced by ChemicalGraph::ChemicalGraph().

◆ GetResidue_id()

const CAtom_pntr_Base::TResidue_id & CAtom_pntr_Base::GetResidue_id ( void  ) const
inline

Get the Residue_id member data.

Returns
Reference to the member data.

Definition at line 303 of file Atom_pntr_.hpp.

References CAtom_pntr_Base::CanGetResidue_id(), CAtom_pntr_Base::m_Residue_id, and CSerialObject::ThrowUnassigned().

Referenced by ChemicalGraph::CheckForDisulfide(), and MakeBond().

◆ GetResidue_sequence()

const CMolecule_graph_Base::TResidue_sequence & CMolecule_graph_Base::GetResidue_sequence ( void  ) const
inline

Get the Residue_sequence member data.

Returns
Reference to the member data.

Definition at line 477 of file Molecule_graph_.hpp.

References CMolecule_graph_Base::m_Residue_sequence.

Referenced by Molecule::Molecule().

◆ GetResidue_type()

CResidue_graph_Base::TResidue_type CResidue_graph_Base::GetResidue_type ( void  ) const
inline

Get the Residue_type member data.

Returns
Copy of the member data.

Definition at line 486 of file Residue_graph_.hpp.

References CResidue_graph_Base::CanGetResidue_type(), CResidue_graph_Base::m_Residue_type, and CSerialObject::ThrowUnassigned().

Referenced by Residue::Residue().

◆ GetSeq_id()

const CMolecule_graph_Base::TSeq_id & CMolecule_graph_Base::GetSeq_id ( void  ) const
inline

Get the Seq_id member data.

Returns
Reference to the member data.

Definition at line 456 of file Molecule_graph_.hpp.

References CMolecule_graph_Base::CanGetSeq_id(), CMolecule_graph_Base::m_Seq_id, and CSerialObject::ThrowUnassigned().

Referenced by Molecule::Molecule().

◆ GetSid()

const CMolecule_graph_Base::TSid & CMolecule_graph_Base::GetSid ( void  ) const
inline

Get the Sid member data.

Returns
Reference to the member data.

Definition at line 534 of file Molecule_graph_.hpp.

References CMolecule_graph_Base::CanGetSid(), CMolecule_graph_Base::m_Sid, and CSerialObject::ThrowUnassigned().

◆ GetSign()

CChiral_center_Base::TSign CChiral_center_Base::GetSign ( void  ) const
inline

Get the Sign member data.

Returns
Copy of the member data.

Definition at line 523 of file Chiral_center_.hpp.

References CChiral_center_Base::CanGetSign(), CChiral_center_Base::m_Sign, and CSerialObject::ThrowUnassigned().

◆ GetStandard()

const CResidue_graph_pntr_Base::TStandard & CResidue_graph_pntr_Base::GetStandard ( void  ) const

Get the variant data.

Returns
Reference to the data.

Definition at line 137 of file Residue_graph_pntr_.cpp.

References CResidue_graph_pntr_Base::CheckSelected(), CResidue_graph_pntr_Base::e_Standard, and CResidue_graph_pntr_Base::m_object.

Referenced by Residue::Residue().

◆ IsAssembly_type()

bool CBiomol_descr_Base::IsAssembly_type ( void  ) const
inline

Check if variant Assembly_type is selected.

Assembly_type type is defined as 'typedef int TAssembly_type'.

Returns
  • true, if the variant is selected.
  • false, otherwise.

Definition at line 608 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::e_Assembly_type, and CBiomol_descr_Base::m_choice.

◆ IsAttribution()

bool CBiomol_descr_Base::IsAttribution ( void  ) const
inline

Check if variant Attribution is selected.

Attribution type is defined as 'typedef CPub TAttribution'.

Returns
  • true, if the variant is selected.
  • false, otherwise.

Definition at line 602 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::e_Attribution, and CBiomol_descr_Base::m_choice.

◆ IsBiostruc()

bool CResidue_graph_pntr_Base::IsBiostruc ( void  ) const
inline

Check if variant Biostruc is selected.

Biostruc type is defined as 'typedef CBiostruc_graph_pntr TBiostruc'.

Returns
  • true, if the variant is selected.
  • false, otherwise.

Definition at line 317 of file Residue_graph_pntr_.hpp.

References CResidue_graph_pntr_Base::e_Biostruc, and CResidue_graph_pntr_Base::m_choice.

◆ IsLocal()

bool CResidue_graph_pntr_Base::IsLocal ( void  ) const
inline

Check if variant Local is selected.

Local type is defined as 'typedef CResidue_graph_id TLocal'.

Returns
  • true, if the variant is selected.
  • false, otherwise.

Definition at line 297 of file Residue_graph_pntr_.hpp.

References CResidue_graph_pntr_Base::e_Local, and CResidue_graph_pntr_Base::m_choice.

Referenced by Residue::Residue().

◆ IsMolecule_type()

bool CBiomol_descr_Base::IsMolecule_type ( void  ) const
inline

Check if variant Molecule_type is selected.

Molecule_type type is defined as 'typedef int TMolecule_type'.

Returns
  • true, if the variant is selected.
  • false, otherwise.

Definition at line 635 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::e_Molecule_type, and CBiomol_descr_Base::m_choice.

◆ IsName()

bool CBiomol_descr_Base::IsName ( void  ) const
inline

Check if variant Name is selected.

Name type is defined as 'typedef string TName'.

Returns
  • true, if the variant is selected.
  • false, otherwise.

Definition at line 496 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::e_Name, and CBiomol_descr_Base::m_choice.

◆ IsOrganism()

bool CBiomol_descr_Base::IsOrganism ( void  ) const
inline

Check if variant Organism is selected.

Organism type is defined as 'typedef CBioSource TOrganism'.

Returns
  • true, if the variant is selected.
  • false, otherwise.

Definition at line 596 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::e_Organism, and CBiomol_descr_Base::m_choice.

◆ IsOther_comment()

bool CBiomol_descr_Base::IsOther_comment ( void  ) const
inline

Check if variant Other_comment is selected.

Other_comment type is defined as 'typedef string TOther_comment'.

Returns
  • true, if the variant is selected.
  • false, otherwise.

Definition at line 576 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::e_Other_comment, and CBiomol_descr_Base::m_choice.

◆ IsPdb_class()

bool CBiomol_descr_Base::IsPdb_class ( void  ) const
inline

Check if variant Pdb_class is selected.

Pdb_class type is defined as 'typedef string TPdb_class'.

Returns
  • true, if the variant is selected.
  • false, otherwise.

Definition at line 516 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::e_Pdb_class, and CBiomol_descr_Base::m_choice.

◆ IsPdb_comment()

bool CBiomol_descr_Base::IsPdb_comment ( void  ) const
inline

Check if variant Pdb_comment is selected.

Pdb_comment type is defined as 'typedef string TPdb_comment'.

Returns
  • true, if the variant is selected.
  • false, otherwise.

Definition at line 556 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::e_Pdb_comment, and CBiomol_descr_Base::m_choice.

◆ IsPdb_source()

bool CBiomol_descr_Base::IsPdb_source ( void  ) const
inline

Check if variant Pdb_source is selected.

Pdb_source type is defined as 'typedef string TPdb_source'.

Returns
  • true, if the variant is selected.
  • false, otherwise.

Definition at line 536 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::e_Pdb_source, and CBiomol_descr_Base::m_choice.

◆ IsSet()

bool CAtom_pntr_set_Base::IsSet ( void  ) const
inline

Check if a value has been assigned to data member.

Data member is mandatory; its type is defined as 'typedef list< CRef< CAtom_pntr > > Tdata'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 152 of file Atom_pntr_set_.hpp.

References CAtom_pntr_set_Base::m_set_State.

◆ IsSetAtom_id()

bool CAtom_pntr_Base::IsSetAtom_id ( void  ) const
inline

Check if a value has been assigned to Atom_id data member.

Data member Atom_id is mandatory; its type is defined as 'typedef CAtom_id TAtom_id'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 326 of file Atom_pntr_.hpp.

References CAtom_pntr_Base::m_set_State.

Referenced by CAtom_pntr_Base::CanGetAtom_id().

◆ IsSetAtom_id_1() [1/2]

bool CInter_residue_bond_Base::IsSetAtom_id_1 ( void  ) const
inline

Check if a value has been assigned to Atom_id_1 data member.

Data member Atom_id_1 is mandatory; its type is defined as 'typedef CAtom_pntr TAtom_id_1'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 257 of file Inter_residue_bond_.hpp.

References CInter_residue_bond_Base::m_Atom_id_1.

◆ IsSetAtom_id_1() [2/2]

bool CIntra_residue_bond_Base::IsSetAtom_id_1 ( void  ) const
inline

Check if a value has been assigned to Atom_id_1 data member.

Data member Atom_id_1 is mandatory; its type is defined as 'typedef CAtom_id TAtom_id_1'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 261 of file Intra_residue_bond_.hpp.

References CIntra_residue_bond_Base::m_set_State.

Referenced by CIntra_residue_bond_Base::CanGetAtom_id_1().

◆ IsSetAtom_id_2() [1/2]

bool CInter_residue_bond_Base::IsSetAtom_id_2 ( void  ) const
inline

Check if a value has been assigned to Atom_id_2 data member.

Data member Atom_id_2 is mandatory; its type is defined as 'typedef CAtom_pntr TAtom_id_2'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 287 of file Inter_residue_bond_.hpp.

References CInter_residue_bond_Base::m_Atom_id_2.

◆ IsSetAtom_id_2() [2/2]

bool CIntra_residue_bond_Base::IsSetAtom_id_2 ( void  ) const
inline

Check if a value has been assigned to Atom_id_2 data member.

Data member Atom_id_2 is mandatory; its type is defined as 'typedef CAtom_id TAtom_id_2'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 303 of file Intra_residue_bond_.hpp.

References CIntra_residue_bond_Base::m_set_State.

Referenced by CIntra_residue_bond_Base::CanGetAtom_id_2().

◆ IsSetAtoms()

bool CResidue_graph_Base::IsSetAtoms ( void  ) const
inline

Check if a value has been assigned to Atoms data member.

Data member Atoms is mandatory; its type is defined as 'typedef list< CRef< CAtom > > TAtoms'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 539 of file Residue_graph_.hpp.

References CResidue_graph_Base::m_set_State.

◆ IsSetBiostruc_id()

bool CBiostruc_graph_pntr_Base::IsSetBiostruc_id ( void  ) const
inline

Check if a value has been assigned to Biostruc_id data member.

Data member Biostruc_id is mandatory; its type is defined as 'typedef CBiostruc_id TBiostruc_id'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 202 of file Biostruc_graph_pntr_.hpp.

References CBiostruc_graph_pntr_Base::m_Biostruc_id.

◆ IsSetBiostruc_residue_graph_set_id()

bool CBiostruc_residue_graph_set_pntr_Base::IsSetBiostruc_residue_graph_set_id ( void  ) const
inline

Check if a value has been assigned to Biostruc_residue_graph_set_id data member.

Data member Biostruc_residue_graph_set_id is mandatory; its type is defined as 'typedef CBiostruc_id TBiostruc_residue_graph_set_id'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 202 of file Biost_resid_graph_set_pntr_.hpp.

References CBiostruc_residue_graph_set_pntr_Base::m_Biostruc_residue_graph_set_id.

◆ IsSetBond_order() [1/2]

bool CInter_residue_bond_Base::IsSetBond_order ( void  ) const
inline

Check if a value has been assigned to Bond_order data member.

Data member Bond_order is optional; its type is defined as 'typedef int TBond_order'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 317 of file Inter_residue_bond_.hpp.

References CInter_residue_bond_Base::m_set_State.

Referenced by CInter_residue_bond_Base::CanGetBond_order(), and CInter_residue_bond_Base::SetBond_order().

◆ IsSetBond_order() [2/2]

bool CIntra_residue_bond_Base::IsSetBond_order ( void  ) const
inline

Check if a value has been assigned to Bond_order data member.

Data member Bond_order is optional; its type is defined as 'typedef int TBond_order'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 345 of file Intra_residue_bond_.hpp.

References CIntra_residue_bond_Base::m_set_State.

Referenced by CIntra_residue_bond_Base::CanGetBond_order(), and CIntra_residue_bond_Base::SetBond_order().

◆ IsSetBonds()

bool CResidue_graph_Base::IsSetBonds ( void  ) const
inline

Check if a value has been assigned to Bonds data member.

Data member Bonds is mandatory; its type is defined as 'typedef list< CRef< CIntra_residue_bond > > TBonds'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 564 of file Residue_graph_.hpp.

References CResidue_graph_Base::m_set_State.

◆ IsSetC()

bool CChiral_center_Base::IsSetC ( void  ) const
inline

Check if a value has been assigned to C data member.

Data member C is mandatory; its type is defined as 'typedef CAtom_id TC'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 336 of file Chiral_center_.hpp.

References CChiral_center_Base::m_set_State.

Referenced by CChiral_center_Base::CanGetC().

◆ IsSetChiral_centers()

bool CResidue_graph_Base::IsSetChiral_centers ( void  ) const
inline

Check if a value has been assigned to Chiral_centers data member.

Data member Chiral_centers is optional; its type is defined as 'typedef list< CRef< CChiral_center > > TChiral_centers'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 589 of file Residue_graph_.hpp.

References CResidue_graph_Base::m_set_State.

◆ IsSetDescr() [1/3]

bool CBiostruc_graph_Base::IsSetDescr ( void  ) const
inline

Check if a value has been assigned to Descr data member.

Data member Descr is optional; its type is defined as 'typedef list< CRef< CBiomol_descr > > TDescr'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 275 of file Biostruc_graph_.hpp.

References CBiostruc_graph_Base::m_set_State.

Referenced by ChemicalGraph::ChemicalGraph().

◆ IsSetDescr() [2/3]

bool CMolecule_graph_Base::IsSetDescr ( void  ) const
inline

Check if a value has been assigned to Descr data member.

Data member Descr is optional; its type is defined as 'typedef list< CRef< CBiomol_descr > > TDescr'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 419 of file Molecule_graph_.hpp.

References CMolecule_graph_Base::m_set_State.

◆ IsSetDescr() [3/3]

bool CResidue_graph_Base::IsSetDescr ( void  ) const
inline

Check if a value has been assigned to Descr data member.

Data member Descr is optional; its type is defined as 'typedef list< CRef< CBiomol_descr > > TDescr'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 442 of file Residue_graph_.hpp.

References CResidue_graph_Base::m_set_State.

Referenced by Residue::Residue().

◆ IsSetElement()

bool CAtom_Base::IsSetElement ( void  ) const
inline

Check if a value has been assigned to Element data member.

Data member Element is mandatory; its type is defined as 'typedef EElement TElement'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 559 of file Atom_.hpp.

References CAtom_Base::m_set_State.

Referenced by CAtom_Base::CanGetElement(), and CAtom_Base::SetElement().

◆ IsSetId() [1/4]

bool CAtom_Base::IsSetId ( void  ) const
inline

Check if a value has been assigned to Id data member.

Data member Id is mandatory; its type is defined as 'typedef CAtom_id TId'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 445 of file Atom_.hpp.

References CAtom_Base::m_set_State.

Referenced by CAtom_Base::CanGetId().

◆ IsSetId() [2/4]

bool CMolecule_graph_Base::IsSetId ( void  ) const
inline

Check if a value has been assigned to Id data member.

Data member Id is mandatory; its type is defined as 'typedef CMolecule_id TId'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 377 of file Molecule_graph_.hpp.

References CMolecule_graph_Base::m_set_State.

Referenced by CMolecule_graph_Base::CanGetId().

◆ IsSetId() [3/4]

bool CResidue_Base::IsSetId ( void  ) const
inline

Check if a value has been assigned to Id data member.

Data member Id is mandatory; its type is defined as 'typedef CResidue_id TId'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 246 of file Residue_.hpp.

References CResidue_Base::m_set_State.

Referenced by CResidue_Base::CanGetId().

◆ IsSetId() [4/4]

bool CResidue_graph_Base::IsSetId ( void  ) const
inline

Check if a value has been assigned to Id data member.

Data member Id is mandatory; its type is defined as 'typedef CResidue_graph_id TId'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 400 of file Residue_graph_.hpp.

References CResidue_graph_Base::m_set_State.

Referenced by CResidue_graph_Base::CanGetId().

◆ IsSetInter_molecule_bonds()

bool CBiostruc_graph_Base::IsSetInter_molecule_bonds ( void  ) const
inline

Check if a value has been assigned to Inter_molecule_bonds data member.

Data member Inter_molecule_bonds is optional; its type is defined as 'typedef list< CRef< CInter_residue_bond > > TInter_molecule_bonds'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 325 of file Biostruc_graph_.hpp.

References CBiostruc_graph_Base::m_set_State.

Referenced by ChemicalGraph::ChemicalGraph().

◆ IsSetInter_residue_bonds()

bool CMolecule_graph_Base::IsSetInter_residue_bonds ( void  ) const
inline

Check if a value has been assigned to Inter_residue_bonds data member.

Data member Inter_residue_bonds is optional; its type is defined as 'typedef list< CRef< CInter_residue_bond > > TInter_residue_bonds'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 490 of file Molecule_graph_.hpp.

References CMolecule_graph_Base::m_set_State.

Referenced by Molecule::Molecule().

◆ IsSetIonizable_proton()

bool CAtom_Base::IsSetIonizable_proton ( void  ) const
inline

Check if a value has been assigned to Ionizable_proton data member.

Data member Ionizable_proton is optional; its type is defined as 'typedef EIonizable_proton TIonizable_proton'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 606 of file Atom_.hpp.

References CAtom_Base::m_set_State.

Referenced by CAtom_Base::CanGetIonizable_proton(), Residue::Residue(), and CAtom_Base::SetIonizable_proton().

◆ IsSetIupac_code() [1/2]

bool CAtom_Base::IsSetIupac_code ( void  ) const
inline

Check if a value has been assigned to Iupac_code data member.

Data member Iupac_code is optional; its type is defined as 'typedef list< string > TIupac_code'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 534 of file Atom_.hpp.

References CAtom_Base::m_set_State.

Referenced by ClassifyAtom(), and Residue::Residue().

◆ IsSetIupac_code() [2/2]

bool CResidue_graph_Base::IsSetIupac_code ( void  ) const
inline

Check if a value has been assigned to Iupac_code data member.

Data member Iupac_code is optional; its type is defined as 'typedef list< string > TIupac_code'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 514 of file Residue_graph_.hpp.

References CResidue_graph_Base::m_set_State.

Referenced by Residue::Residue().

◆ IsSetMolecule_graphs()

bool CBiostruc_graph_Base::IsSetMolecule_graphs ( void  ) const
inline

Check if a value has been assigned to Molecule_graphs data member.

Data member Molecule_graphs is mandatory; its type is defined as 'typedef list< CRef< CMolecule_graph > > TMolecule_graphs'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 300 of file Biostruc_graph_.hpp.

References CBiostruc_graph_Base::m_set_State.

◆ IsSetMolecule_id()

bool CAtom_pntr_Base::IsSetMolecule_id ( void  ) const
inline

Check if a value has been assigned to Molecule_id data member.

Data member Molecule_id is mandatory; its type is defined as 'typedef CMolecule_id TMolecule_id'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 242 of file Atom_pntr_.hpp.

References CAtom_pntr_Base::m_set_State.

Referenced by CAtom_pntr_Base::CanGetMolecule_id().

◆ IsSetN1()

bool CChiral_center_Base::IsSetN1 ( void  ) const
inline

Check if a value has been assigned to N1 data member.

Data member N1 is mandatory; its type is defined as 'typedef CAtom_id TN1'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 378 of file Chiral_center_.hpp.

References CChiral_center_Base::m_set_State.

Referenced by CChiral_center_Base::CanGetN1().

◆ IsSetN2()

bool CChiral_center_Base::IsSetN2 ( void  ) const
inline

Check if a value has been assigned to N2 data member.

Data member N2 is mandatory; its type is defined as 'typedef CAtom_id TN2'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 420 of file Chiral_center_.hpp.

References CChiral_center_Base::m_set_State.

Referenced by CChiral_center_Base::CanGetN2().

◆ IsSetN3()

bool CChiral_center_Base::IsSetN3 ( void  ) const
inline

Check if a value has been assigned to N3 data member.

Data member N3 is mandatory; its type is defined as 'typedef CAtom_id TN3'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 462 of file Chiral_center_.hpp.

References CChiral_center_Base::m_set_State.

Referenced by CChiral_center_Base::CanGetN3().

◆ IsSetName() [1/2]

bool CAtom_Base::IsSetName ( void  ) const
inline

Check if a value has been assigned to Name data member.

Data member Name is optional; its type is defined as 'typedef string TName'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 487 of file Atom_.hpp.

References CAtom_Base::m_set_State.

Referenced by CAtom_Base::CanGetName(), Residue::Residue(), and CAtom_Base::SetName().

◆ IsSetName() [2/2]

bool CResidue_Base::IsSetName ( void  ) const
inline

Check if a value has been assigned to Name data member.

Data member Name is optional; its type is defined as 'typedef string TName'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 288 of file Residue_.hpp.

References CResidue_Base::m_set_State.

Referenced by CResidue_Base::CanGetName(), Residue::Residue(), and CResidue_Base::SetName().

◆ IsSetResidue_graph()

bool CResidue_Base::IsSetResidue_graph ( void  ) const
inline

Check if a value has been assigned to Residue_graph data member.

Data member Residue_graph is mandatory; its type is defined as 'typedef CResidue_graph_pntr TResidue_graph'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 335 of file Residue_.hpp.

References CResidue_Base::m_Residue_graph.

◆ IsSetResidue_graph_id() [1/2]

bool CBiostruc_residue_graph_set_pntr_Base::IsSetResidue_graph_id ( void  ) const
inline

Check if a value has been assigned to Residue_graph_id data member.

Data member Residue_graph_id is mandatory; its type is defined as 'typedef CResidue_graph_id TResidue_graph_id'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 232 of file Biost_resid_graph_set_pntr_.hpp.

References CBiostruc_residue_graph_set_pntr_Base::m_set_State.

Referenced by CBiostruc_residue_graph_set_pntr_Base::CanGetResidue_graph_id().

◆ IsSetResidue_graph_id() [2/2]

bool CBiostruc_graph_pntr_Base::IsSetResidue_graph_id ( void  ) const
inline

Check if a value has been assigned to Residue_graph_id data member.

Data member Residue_graph_id is mandatory; its type is defined as 'typedef CResidue_graph_id TResidue_graph_id'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 232 of file Biostruc_graph_pntr_.hpp.

References CBiostruc_graph_pntr_Base::m_set_State.

Referenced by CBiostruc_graph_pntr_Base::CanGetResidue_graph_id().

◆ IsSetResidue_graphs()

bool CBiostruc_graph_Base::IsSetResidue_graphs ( void  ) const
inline

Check if a value has been assigned to Residue_graphs data member.

Data member Residue_graphs is optional; its type is defined as 'typedef list< CRef< CResidue_graph > > TResidue_graphs'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 350 of file Biostruc_graph_.hpp.

References CBiostruc_graph_Base::m_set_State.

◆ IsSetResidue_id()

bool CAtom_pntr_Base::IsSetResidue_id ( void  ) const
inline

Check if a value has been assigned to Residue_id data member.

Data member Residue_id is mandatory; its type is defined as 'typedef CResidue_id TResidue_id'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 284 of file Atom_pntr_.hpp.

References CAtom_pntr_Base::m_set_State.

Referenced by CAtom_pntr_Base::CanGetResidue_id().

◆ IsSetResidue_sequence()

bool CMolecule_graph_Base::IsSetResidue_sequence ( void  ) const
inline

Check if a value has been assigned to Residue_sequence data member.

Data member Residue_sequence is mandatory; its type is defined as 'typedef list< CRef< CResidue > > TResidue_sequence'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 465 of file Molecule_graph_.hpp.

References CMolecule_graph_Base::m_set_State.

◆ IsSetResidue_type()

bool CResidue_graph_Base::IsSetResidue_type ( void  ) const
inline

Check if a value has been assigned to Residue_type data member.

Data member Residue_type is optional; its type is defined as 'typedef int TResidue_type'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 467 of file Residue_graph_.hpp.

References CResidue_graph_Base::m_set_State.

Referenced by CResidue_graph_Base::CanGetResidue_type(), Residue::Residue(), and CResidue_graph_Base::SetResidue_type().

◆ IsSetSeq_id()

bool CMolecule_graph_Base::IsSetSeq_id ( void  ) const
inline

Check if a value has been assigned to Seq_id data member.

Data member Seq_id is optional; its type is defined as 'typedef CSeq_id TSeq_id'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 444 of file Molecule_graph_.hpp.

References CMolecule_graph_Base::m_Seq_id.

Referenced by CMolecule_graph_Base::CanGetSeq_id(), and Molecule::Molecule().

◆ IsSetSid()

bool CMolecule_graph_Base::IsSetSid ( void  ) const
inline

Check if a value has been assigned to Sid data member.

Data member Sid is optional; its type is defined as 'typedef CPCSubstance_id TSid'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 515 of file Molecule_graph_.hpp.

References CMolecule_graph_Base::m_set_State.

Referenced by CMolecule_graph_Base::CanGetSid().

◆ IsSetSign()

bool CChiral_center_Base::IsSetSign ( void  ) const
inline

Check if a value has been assigned to Sign data member.

Data member Sign is mandatory; its type is defined as 'typedef ESign TSign'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 504 of file Chiral_center_.hpp.

References CChiral_center_Base::m_set_State.

Referenced by CChiral_center_Base::CanGetSign(), and CChiral_center_Base::SetSign().

◆ IsStandard()

bool CResidue_graph_pntr_Base::IsStandard ( void  ) const
inline

Check if variant Standard is selected.

Standard type is defined as 'typedef CBiostruc_residue_graph_set_pntr TStandard'.

Returns
  • true, if the variant is selected.
  • false, otherwise.

Definition at line 323 of file Residue_graph_pntr_.hpp.

References CResidue_graph_pntr_Base::e_Standard, and CResidue_graph_pntr_Base::m_choice.

Referenced by Residue::Residue().

◆ operator const Tdata &()

CAtom_pntr_set_Base::operator const CAtom_pntr_set_Base::Tdata & ( void  ) const
inline

Conversion operator to 'const Tdata' type.

Definition at line 177 of file Atom_pntr_set_.hpp.

◆ operator Tdata &()

CAtom_pntr_set_Base::operator CAtom_pntr_set_Base::Tdata & ( void  )
inline

Conversion operator to 'Tdata' type.

Definition at line 183 of file Atom_pntr_set_.hpp.

◆ operator<<() [1/5]

NCBI_NS_NCBI::CNcbiOstream& operator<< ( NCBI_NS_NCBI::CNcbiOstream str,
const CAtom_id_Base obj 
)
inline

Definition at line 102 of file Atom_id_.hpp.

References str(), and WriteObject().

◆ operator<<() [2/5]

Definition at line 102 of file Molecule_id_.hpp.

References str(), and WriteObject().

◆ operator<<() [3/5]

Definition at line 103 of file PCSubstance_id_.hpp.

References str(), and WriteObject().

◆ operator<<() [4/5]

Definition at line 102 of file Residue_graph_id_.hpp.

References str(), and WriteObject().

◆ operator<<() [5/5]

Definition at line 102 of file Residue_id_.hpp.

References str(), and WriteObject().

◆ operator=() [1/28]

CAtom& CAtom::operator= ( const CAtom value)
private

◆ operator=() [2/28]

CAtom_Base& CAtom_Base::operator= ( const CAtom_Base )
private

◆ operator=() [3/28]

CAtom_pntr& CAtom_pntr::operator= ( const CAtom_pntr value)
private

◆ operator=() [4/28]

CAtom_pntr_Base& CAtom_pntr_Base::operator= ( const CAtom_pntr_Base )
private

◆ operator=() [5/28]

CAtom_pntr_set& CAtom_pntr_set::operator= ( const CAtom_pntr_set value)
private

◆ operator=() [6/28]

CAtom_pntr_set_Base& CAtom_pntr_set_Base::operator= ( const CAtom_pntr_set_Base )
private

◆ operator=() [7/28]

CBiomol_descr& CBiomol_descr::operator= ( const CBiomol_descr value)
private

◆ operator=() [8/28]

CBiomol_descr_Base& CBiomol_descr_Base::operator= ( const CBiomol_descr_Base )
private

◆ operator=() [9/28]

CBiostruc_graph& CBiostruc_graph::operator= ( const CBiostruc_graph value)
private

◆ operator=() [10/28]

CBiostruc_graph_Base& CBiostruc_graph_Base::operator= ( const CBiostruc_graph_Base )
private

◆ operator=() [11/28]

CBiostruc_graph_pntr& CBiostruc_graph_pntr::operator= ( const CBiostruc_graph_pntr value)
private

◆ operator=() [12/28]

CBiostruc_graph_pntr_Base& CBiostruc_graph_pntr_Base::operator= ( const CBiostruc_graph_pntr_Base )
private

◆ operator=() [13/28]

CBiostruc_residue_graph_set_pntr& CBiostruc_residue_graph_set_pntr::operator= ( const CBiostruc_residue_graph_set_pntr value)
private

◆ operator=() [14/28]

CBiostruc_residue_graph_set_pntr_Base& CBiostruc_residue_graph_set_pntr_Base::operator= ( const CBiostruc_residue_graph_set_pntr_Base )
private

◆ operator=() [15/28]

CChiral_center& CChiral_center::operator= ( const CChiral_center value)
private

◆ operator=() [16/28]

CChiral_center_Base& CChiral_center_Base::operator= ( const CChiral_center_Base )
private

◆ operator=() [17/28]

CInter_residue_bond& CInter_residue_bond::operator= ( const CInter_residue_bond value)
private

◆ operator=() [18/28]

CInter_residue_bond_Base& CInter_residue_bond_Base::operator= ( const CInter_residue_bond_Base )
private

◆ operator=() [19/28]

CIntra_residue_bond& CIntra_residue_bond::operator= ( const CIntra_residue_bond value)
private

◆ operator=() [20/28]

CIntra_residue_bond_Base& CIntra_residue_bond_Base::operator= ( const CIntra_residue_bond_Base )
private

◆ operator=() [21/28]

CMolecule_graph& CMolecule_graph::operator= ( const CMolecule_graph value)
private

◆ operator=() [22/28]

CMolecule_graph_Base& CMolecule_graph_Base::operator= ( const CMolecule_graph_Base )
private

◆ operator=() [23/28]

CResidue& CResidue::operator= ( const CResidue value)
private

◆ operator=() [24/28]

CResidue_Base& CResidue_Base::operator= ( const CResidue_Base )
private

◆ operator=() [25/28]

CResidue_graph& CResidue_graph::operator= ( const CResidue_graph value)
private

◆ operator=() [26/28]

CResidue_graph_Base& CResidue_graph_Base::operator= ( const CResidue_graph_Base )
private

◆ operator=() [27/28]

CResidue_graph_pntr& CResidue_graph_pntr::operator= ( const CResidue_graph_pntr value)
private

◆ operator=() [28/28]

CResidue_graph_pntr_Base& CResidue_graph_pntr_Base::operator= ( const CResidue_graph_pntr_Base )
private

◆ operator>>() [1/5]

NCBI_NS_NCBI::CNcbiIstream& operator>> ( NCBI_NS_NCBI::CNcbiIstream str,
CAtom_id_Base obj 
)
inline

Definition at line 113 of file Atom_id_.hpp.

References ReadObject(), and str().

◆ operator>>() [2/5]

NCBI_NS_NCBI::CNcbiIstream& operator>> ( NCBI_NS_NCBI::CNcbiIstream str,
CMolecule_id_Base obj 
)
inline

Definition at line 113 of file Molecule_id_.hpp.

References ReadObject(), and str().

◆ operator>>() [3/5]

Definition at line 114 of file PCSubstance_id_.hpp.

References ReadObject(), and str().

◆ operator>>() [4/5]

Definition at line 113 of file Residue_graph_id_.hpp.

References ReadObject(), and str().

◆ operator>>() [5/5]

NCBI_NS_NCBI::CNcbiIstream& operator>> ( NCBI_NS_NCBI::CNcbiIstream str,
CResidue_id_Base obj 
)
inline

Definition at line 113 of file Residue_id_.hpp.

References ReadObject(), and str().

◆ Reset() [1/14]

void CAtom_Base::Reset ( void  )
virtual

◆ Reset() [2/14]

void CAtom_pntr_Base::Reset ( void  )
virtual

◆ Reset() [3/14]

void CAtom_pntr_set_Base::Reset ( void  )

Reset data member.

Definition at line 51 of file Atom_pntr_set_.cpp.

References CAtom_pntr_set_Base::m_data, and CAtom_pntr_set_Base::m_set_State.

◆ Reset() [4/14]

END_ENUM_INFO void CBiomol_descr_Base::Reset ( void  )
virtual

◆ Reset() [5/14]

void CBiostruc_residue_graph_set_pntr_Base::Reset ( void  )
virtual

◆ Reset() [6/14]

void CBiostruc_graph_Base::Reset ( void  )
virtual

◆ Reset() [7/14]

void CBiostruc_graph_pntr_Base::Reset ( void  )
virtual

◆ Reset() [8/14]

END_ENUM_INFO void CChiral_center_Base::Reset ( void  )
virtual

◆ Reset() [9/14]

void CInter_residue_bond_Base::Reset ( void  )
virtual

◆ Reset() [10/14]

END_ENUM_INFO void CIntra_residue_bond_Base::Reset ( void  )
virtual

◆ Reset() [11/14]

void CMolecule_graph_Base::Reset ( void  )
virtual

◆ Reset() [12/14]

void CResidue_Base::Reset ( void  )
virtual

Reset the whole object.

Definition at line 71 of file Residue_.cpp.

References CResidue_Base::ResetId(), CResidue_Base::ResetName(), and CResidue_Base::ResetResidue_graph().

◆ Reset() [13/14]

void CResidue_graph_Base::Reset ( void  )
virtual

◆ Reset() [14/14]

void CResidue_graph_pntr_Base::Reset ( void  )
virtual

◆ ResetAtom_id()

void CAtom_pntr_Base::ResetAtom_id ( void  )
inline

Reset Atom_id data member.

Definition at line 338 of file Atom_pntr_.hpp.

References CAtom_pntr_Base::m_Atom_id, and CAtom_pntr_Base::m_set_State.

Referenced by CAtom_pntr_Base::Reset().

◆ ResetAtom_id_1() [1/2]

END_ENUM_INFO void CInter_residue_bond_Base::ResetAtom_id_1 ( void  )

◆ ResetAtom_id_1() [2/2]

void CIntra_residue_bond_Base::ResetAtom_id_1 ( void  )
inline

Reset Atom_id_1 data member.

Definition at line 273 of file Intra_residue_bond_.hpp.

References CIntra_residue_bond_Base::m_Atom_id_1, and CIntra_residue_bond_Base::m_set_State.

Referenced by CIntra_residue_bond_Base::Reset().

◆ ResetAtom_id_2() [1/2]

void CInter_residue_bond_Base::ResetAtom_id_2 ( void  )

◆ ResetAtom_id_2() [2/2]

void CIntra_residue_bond_Base::ResetAtom_id_2 ( void  )
inline

Reset Atom_id_2 data member.

Definition at line 315 of file Intra_residue_bond_.hpp.

References CIntra_residue_bond_Base::m_Atom_id_2, and CIntra_residue_bond_Base::m_set_State.

Referenced by CIntra_residue_bond_Base::Reset().

◆ ResetAtoms()

void CResidue_graph_Base::ResetAtoms ( void  )

Reset Atoms data member.

Definition at line 77 of file Residue_graph_.cpp.

References CResidue_graph_Base::m_Atoms, and CResidue_graph_Base::m_set_State.

Referenced by CResidue_graph_Base::Reset().

◆ ResetBiostruc_id()

void CBiostruc_graph_pntr_Base::ResetBiostruc_id ( void  )

◆ ResetBiostruc_residue_graph_set_id()

void CBiostruc_residue_graph_set_pntr_Base::ResetBiostruc_residue_graph_set_id ( void  )

◆ ResetBond_order() [1/2]

void CInter_residue_bond_Base::ResetBond_order ( void  )
inline

Reset Bond_order data member.

Definition at line 329 of file Inter_residue_bond_.hpp.

References CInter_residue_bond_Base::m_Bond_order, and CInter_residue_bond_Base::m_set_State.

Referenced by CInter_residue_bond_Base::Reset().

◆ ResetBond_order() [2/2]

void CIntra_residue_bond_Base::ResetBond_order ( void  )
inline

Reset Bond_order data member.

Definition at line 357 of file Intra_residue_bond_.hpp.

References CIntra_residue_bond_Base::m_Bond_order, and CIntra_residue_bond_Base::m_set_State.

Referenced by CIntra_residue_bond_Base::Reset().

◆ ResetBonds()

void CResidue_graph_Base::ResetBonds ( void  )

Reset Bonds data member.

Definition at line 83 of file Residue_graph_.cpp.

References CResidue_graph_Base::m_Bonds, and CResidue_graph_Base::m_set_State.

Referenced by CResidue_graph_Base::Reset().

◆ ResetC()

void CChiral_center_Base::ResetC ( void  )
inline

Reset C data member.

Definition at line 348 of file Chiral_center_.hpp.

References CChiral_center_Base::m_C, and CChiral_center_Base::m_set_State.

Referenced by CChiral_center_Base::Reset().

◆ ResetChiral_centers()

void CResidue_graph_Base::ResetChiral_centers ( void  )

Reset Chiral_centers data member.

Definition at line 89 of file Residue_graph_.cpp.

References CResidue_graph_Base::m_Chiral_centers, and CResidue_graph_Base::m_set_State.

Referenced by CResidue_graph_Base::Reset().

◆ ResetDescr() [1/3]

void CBiostruc_graph_Base::ResetDescr ( void  )

Reset Descr data member.

Definition at line 54 of file Biostruc_graph_.cpp.

References CBiostruc_graph_Base::m_Descr, and CBiostruc_graph_Base::m_set_State.

Referenced by CBiostruc_graph_Base::Reset().

◆ ResetDescr() [2/3]

void CMolecule_graph_Base::ResetDescr ( void  )

Reset Descr data member.

Definition at line 54 of file Molecule_graph_.cpp.

References CMolecule_graph_Base::m_Descr, and CMolecule_graph_Base::m_set_State.

Referenced by CMolecule_graph_Base::Reset().

◆ ResetDescr() [3/3]

END_ENUM_INFO void CResidue_graph_Base::ResetDescr ( void  )

Reset Descr data member.

Definition at line 65 of file Residue_graph_.cpp.

References CResidue_graph_Base::m_Descr, and CResidue_graph_Base::m_set_State.

Referenced by CResidue_graph_Base::Reset().

◆ ResetElement()

void CAtom_Base::ResetElement ( void  )
inline

Reset Element data member.

Definition at line 571 of file Atom_.hpp.

References CAtom_Base::m_Element, and CAtom_Base::m_set_State.

Referenced by CAtom_Base::Reset().

◆ ResetId() [1/4]

void CAtom_Base::ResetId ( void  )
inline

Reset Id data member.

Definition at line 457 of file Atom_.hpp.

References CAtom_Base::m_Id, and CAtom_Base::m_set_State.

Referenced by CAtom_Base::Reset().

◆ ResetId() [2/4]

void CMolecule_graph_Base::ResetId ( void  )
inline

Reset Id data member.

Definition at line 389 of file Molecule_graph_.hpp.

References CMolecule_graph_Base::m_Id, and CMolecule_graph_Base::m_set_State.

Referenced by CMolecule_graph_Base::Reset().

◆ ResetId() [3/4]

void CResidue_Base::ResetId ( void  )
inline

Reset Id data member.

Definition at line 258 of file Residue_.hpp.

References CResidue_Base::m_Id, and CResidue_Base::m_set_State.

Referenced by CResidue_Base::Reset().

◆ ResetId() [4/4]

void CResidue_graph_Base::ResetId ( void  )
inline

Reset Id data member.

Definition at line 412 of file Residue_graph_.hpp.

References CResidue_graph_Base::m_Id, and CResidue_graph_Base::m_set_State.

Referenced by CResidue_graph_Base::Reset().

◆ ResetInter_molecule_bonds()

void CBiostruc_graph_Base::ResetInter_molecule_bonds ( void  )

Reset Inter_molecule_bonds data member.

Definition at line 66 of file Biostruc_graph_.cpp.

References CBiostruc_graph_Base::m_Inter_molecule_bonds, and CBiostruc_graph_Base::m_set_State.

Referenced by CBiostruc_graph_Base::Reset().

◆ ResetInter_residue_bonds()

void CMolecule_graph_Base::ResetInter_residue_bonds ( void  )

Reset Inter_residue_bonds data member.

Definition at line 83 of file Molecule_graph_.cpp.

References CMolecule_graph_Base::m_Inter_residue_bonds, and CMolecule_graph_Base::m_set_State.

Referenced by CMolecule_graph_Base::Reset().

◆ ResetIonizable_proton()

void CAtom_Base::ResetIonizable_proton ( void  )
inline

Reset Ionizable_proton data member.

Definition at line 618 of file Atom_.hpp.

References CAtom_Base::m_Ionizable_proton, and CAtom_Base::m_set_State.

Referenced by CAtom_Base::Reset().

◆ ResetIupac_code() [1/2]

void CAtom_Base::ResetIupac_code ( void  )

Reset Iupac_code data member.

Definition at line 178 of file Atom_.cpp.

References CAtom_Base::m_Iupac_code, and CAtom_Base::m_set_State.

Referenced by CAtom_Base::Reset().

◆ ResetIupac_code() [2/2]

void CResidue_graph_Base::ResetIupac_code ( void  )

Reset Iupac_code data member.

Definition at line 71 of file Residue_graph_.cpp.

References CResidue_graph_Base::m_Iupac_code, and CResidue_graph_Base::m_set_State.

Referenced by CResidue_graph_Base::Reset().

◆ ResetMolecule_graphs()

void CBiostruc_graph_Base::ResetMolecule_graphs ( void  )

Reset Molecule_graphs data member.

Definition at line 60 of file Biostruc_graph_.cpp.

References CBiostruc_graph_Base::m_Molecule_graphs, and CBiostruc_graph_Base::m_set_State.

Referenced by CBiostruc_graph_Base::Reset().

◆ ResetMolecule_id()

void CAtom_pntr_Base::ResetMolecule_id ( void  )
inline

Reset Molecule_id data member.

Definition at line 254 of file Atom_pntr_.hpp.

References CAtom_pntr_Base::m_Molecule_id, and CAtom_pntr_Base::m_set_State.

Referenced by CAtom_pntr_Base::Reset().

◆ ResetN1()

void CChiral_center_Base::ResetN1 ( void  )
inline

Reset N1 data member.

Definition at line 390 of file Chiral_center_.hpp.

References CChiral_center_Base::m_N1, and CChiral_center_Base::m_set_State.

Referenced by CChiral_center_Base::Reset().

◆ ResetN2()

void CChiral_center_Base::ResetN2 ( void  )
inline

Reset N2 data member.

Definition at line 432 of file Chiral_center_.hpp.

References CChiral_center_Base::m_N2, and CChiral_center_Base::m_set_State.

Referenced by CChiral_center_Base::Reset().

◆ ResetN3()

void CChiral_center_Base::ResetN3 ( void  )
inline

Reset N3 data member.

Definition at line 474 of file Chiral_center_.hpp.

References CChiral_center_Base::m_N3, and CChiral_center_Base::m_set_State.

Referenced by CChiral_center_Base::Reset().

◆ ResetName() [1/2]

END_ENUM_INFO void CAtom_Base::ResetName ( void  )

Reset Name data member.

Definition at line 172 of file Atom_.cpp.

References CAtom_Base::m_Name, and CAtom_Base::m_set_State.

Referenced by CAtom_Base::Reset().

◆ ResetName() [2/2]

void CResidue_Base::ResetName ( void  )

Reset Name data member.

Definition at line 51 of file Residue_.cpp.

References CResidue_Base::m_Name, and CResidue_Base::m_set_State.

Referenced by CResidue_Base::Reset().

◆ ResetResidue_graph()

void CResidue_Base::ResetResidue_graph ( void  )

◆ ResetResidue_graph_id() [1/2]

void CBiostruc_residue_graph_set_pntr_Base::ResetResidue_graph_id ( void  )
inline

◆ ResetResidue_graph_id() [2/2]

void CBiostruc_graph_pntr_Base::ResetResidue_graph_id ( void  )
inline

Reset Residue_graph_id data member.

Definition at line 244 of file Biostruc_graph_pntr_.hpp.

References CBiostruc_graph_pntr_Base::m_Residue_graph_id, and CBiostruc_graph_pntr_Base::m_set_State.

Referenced by CBiostruc_graph_pntr_Base::Reset().

◆ ResetResidue_graphs()

void CBiostruc_graph_Base::ResetResidue_graphs ( void  )

Reset Residue_graphs data member.

Definition at line 72 of file Biostruc_graph_.cpp.

References CBiostruc_graph_Base::m_Residue_graphs, and CBiostruc_graph_Base::m_set_State.

Referenced by CBiostruc_graph_Base::Reset().

◆ ResetResidue_id()

void CAtom_pntr_Base::ResetResidue_id ( void  )
inline

Reset Residue_id data member.

Definition at line 296 of file Atom_pntr_.hpp.

References CAtom_pntr_Base::m_Residue_id, and CAtom_pntr_Base::m_set_State.

Referenced by CAtom_pntr_Base::Reset().

◆ ResetResidue_sequence()

void CMolecule_graph_Base::ResetResidue_sequence ( void  )

Reset Residue_sequence data member.

Definition at line 77 of file Molecule_graph_.cpp.

References CMolecule_graph_Base::m_Residue_sequence, and CMolecule_graph_Base::m_set_State.

Referenced by CMolecule_graph_Base::Reset().

◆ ResetResidue_type()

void CResidue_graph_Base::ResetResidue_type ( void  )
inline

Reset Residue_type data member.

Definition at line 479 of file Residue_graph_.hpp.

References CResidue_graph_Base::m_Residue_type, and CResidue_graph_Base::m_set_State.

Referenced by CResidue_graph_Base::Reset().

◆ ResetSelection() [1/2]

void CBiomol_descr_Base::ResetSelection ( void  )
virtual

◆ ResetSelection() [2/2]

void CResidue_graph_pntr_Base::ResetSelection ( void  )
virtual

◆ ResetSeq_id()

void CMolecule_graph_Base::ResetSeq_id ( void  )

Reset Seq_id data member.

Definition at line 60 of file Molecule_graph_.cpp.

References CMolecule_graph_Base::m_Seq_id.

Referenced by CMolecule_graph_Base::Reset().

◆ ResetSid()

void CMolecule_graph_Base::ResetSid ( void  )
inline

Reset Sid data member.

Definition at line 527 of file Molecule_graph_.hpp.

References CMolecule_graph_Base::m_set_State, and CMolecule_graph_Base::m_Sid.

Referenced by CMolecule_graph_Base::Reset().

◆ ResetSign()

void CChiral_center_Base::ResetSign ( void  )
inline

Reset Sign data member.

Definition at line 516 of file Chiral_center_.hpp.

References CChiral_center_Base::m_set_State, and CChiral_center_Base::m_Sign.

Referenced by CChiral_center_Base::Reset().

◆ Select() [1/4]

void CBiomol_descr_Base::Select ( E_Choice  index,
EResetVariant  reset,
CObjectMemoryPool pool 
)

Select the requested variant if needed, allocating CObject variants from memory pool.

◆ Select() [2/4]

void CResidue_graph_pntr_Base::Select ( E_Choice  index,
EResetVariant  reset,
CObjectMemoryPool pool 
)

Select the requested variant if needed, allocating CObject variants from memory pool.

◆ Select() [3/4]

void CBiomol_descr_Base::Select ( E_Choice  index,
EResetVariant  reset = eDoResetVariant 
)

Select the requested variant if needed.

Parameters
indexNew selection state.
resetFlag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant.

Referenced by CBiomol_descr_Base::SetAssembly_type(), CBiomol_descr_Base::SetAttribution(), CBiomol_descr_Base::SetMolecule_type(), CBiomol_descr_Base::SetName(), CBiomol_descr_Base::SetOrganism(), CBiomol_descr_Base::SetOther_comment(), CBiomol_descr_Base::SetPdb_class(), CBiomol_descr_Base::SetPdb_comment(), and CBiomol_descr_Base::SetPdb_source().

◆ Select() [4/4]

void CResidue_graph_pntr_Base::Select ( E_Choice  index,
EResetVariant  reset = eDoResetVariant 
)

Select the requested variant if needed.

Parameters
indexNew selection state.
resetFlag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant.

Referenced by CResidue_graph_pntr_Base::SetBiostruc(), CResidue_graph_pntr_Base::SetLocal(), and CResidue_graph_pntr_Base::SetStandard().

◆ SelectionName() [1/2]

NCBI_NS_STD::string CBiomol_descr_Base::SelectionName ( E_Choice  index)
static

Retrieve selection name (for diagnostic purposes).

Parameters
indexOne of possible selection states.
Returns
Name string.

Definition at line 143 of file Biomol_descr_.cpp.

References CBiomol_descr_Base::sm_SelectionNames.

◆ SelectionName() [2/2]

NCBI_NS_STD::string CResidue_graph_pntr_Base::SelectionName ( E_Choice  index)
static

Retrieve selection name (for diagnostic purposes).

Parameters
indexOne of possible selection states.
Returns
Name string.

Definition at line 99 of file Residue_graph_pntr_.cpp.

References CResidue_graph_pntr_Base::sm_SelectionNames.

◆ Set()

CAtom_pntr_set_Base::Tdata & CAtom_pntr_set_Base::Set ( void  )
inline

Assign a value to data member.

Returns
Reference to the data value.

Definition at line 170 of file Atom_pntr_set_.hpp.

References CAtom_pntr_set_Base::m_data, and CAtom_pntr_set_Base::m_set_State.

◆ SetAssembly_type() [1/2]

void CBiomol_descr_Base::SetAssembly_type ( CBiomol_descr_Base::TAssembly_type  value)
inline

Select the variant and set its data.

Parameters
valueVariant data.

Definition at line 628 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::e_Assembly_type, eDoNotResetVariant, CBiomol_descr_Base::m_Assembly_type, CBiomol_descr_Base::Select(), and value.

◆ SetAssembly_type() [2/2]

CBiomol_descr_Base::TAssembly_type & CBiomol_descr_Base::SetAssembly_type ( void  )
inline

Select the variant.

Returns
Reference to the variant data.

Definition at line 621 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::e_Assembly_type, eDoNotResetVariant, CBiomol_descr_Base::m_Assembly_type, and CBiomol_descr_Base::Select().

◆ SetAtom_id() [1/2]

void CAtom_pntr_Base::SetAtom_id ( const TAtom_id value)
inline

Assign a value to Atom_id data member.

Parameters
valueValue to assign

Definition at line 354 of file Atom_pntr_.hpp.

References CAtom_pntr_Base::m_Atom_id, CAtom_pntr_Base::m_set_State, and value.

◆ SetAtom_id() [2/2]

CAtom_pntr_Base::TAtom_id & CAtom_pntr_Base::SetAtom_id ( void  )
inline

Assign a value to Atom_id data member.

Returns
Reference to the data value.

Definition at line 361 of file Atom_pntr_.hpp.

References CAtom_pntr_Base::m_Atom_id, and CAtom_pntr_Base::m_set_State.

◆ SetAtom_id_1() [1/4]

void CIntra_residue_bond_Base::SetAtom_id_1 ( const TAtom_id_1 value)
inline

Assign a value to Atom_id_1 data member.

Parameters
valueValue to assign

Definition at line 289 of file Intra_residue_bond_.hpp.

References CIntra_residue_bond_Base::m_Atom_id_1, CIntra_residue_bond_Base::m_set_State, and value.

◆ SetAtom_id_1() [2/4]

void CInter_residue_bond_Base::SetAtom_id_1 ( CInter_residue_bond_Base::TAtom_id_1 value)

Assign a value to Atom_id_1 data member.

Parameters
valueReference to value.

Definition at line 74 of file Inter_residue_bond_.cpp.

References CInter_residue_bond_Base::m_Atom_id_1, and value.

◆ SetAtom_id_1() [3/4]

CInter_residue_bond_Base::TAtom_id_1 & CInter_residue_bond_Base::SetAtom_id_1 ( void  )
inline

Assign a value to Atom_id_1 data member.

Returns
Reference to the data value.

Definition at line 278 of file Inter_residue_bond_.hpp.

References CInter_residue_bond_Base::m_Atom_id_1, and CInter_residue_bond_Base::ResetAtom_id_1().

◆ SetAtom_id_1() [4/4]

CIntra_residue_bond_Base::TAtom_id_1 & CIntra_residue_bond_Base::SetAtom_id_1 ( void  )
inline

Assign a value to Atom_id_1 data member.

Returns
Reference to the data value.

Definition at line 296 of file Intra_residue_bond_.hpp.

References CIntra_residue_bond_Base::m_Atom_id_1, and CIntra_residue_bond_Base::m_set_State.

◆ SetAtom_id_2() [1/4]

void CIntra_residue_bond_Base::SetAtom_id_2 ( const TAtom_id_2 value)
inline

Assign a value to Atom_id_2 data member.

Parameters
valueValue to assign

Definition at line 331 of file Intra_residue_bond_.hpp.

References CIntra_residue_bond_Base::m_Atom_id_2, CIntra_residue_bond_Base::m_set_State, and value.

◆ SetAtom_id_2() [2/4]

void CInter_residue_bond_Base::SetAtom_id_2 ( CInter_residue_bond_Base::TAtom_id_2 value)

Assign a value to Atom_id_2 data member.

Parameters
valueReference to value.

Definition at line 88 of file Inter_residue_bond_.cpp.

References CInter_residue_bond_Base::m_Atom_id_2, and value.

◆ SetAtom_id_2() [3/4]

CInter_residue_bond_Base::TAtom_id_2 & CInter_residue_bond_Base::SetAtom_id_2 ( void  )
inline

Assign a value to Atom_id_2 data member.

Returns
Reference to the data value.

Definition at line 308 of file Inter_residue_bond_.hpp.

References CInter_residue_bond_Base::m_Atom_id_2, and CInter_residue_bond_Base::ResetAtom_id_2().

◆ SetAtom_id_2() [4/4]

CIntra_residue_bond_Base::TAtom_id_2 & CIntra_residue_bond_Base::SetAtom_id_2 ( void  )
inline

Assign a value to Atom_id_2 data member.

Returns
Reference to the data value.

Definition at line 338 of file Intra_residue_bond_.hpp.

References CIntra_residue_bond_Base::m_Atom_id_2, and CIntra_residue_bond_Base::m_set_State.

◆ SetAtoms()

CResidue_graph_Base::TAtoms & CResidue_graph_Base::SetAtoms ( void  )
inline

Assign a value to Atoms data member.

Returns
Reference to the data value.

Definition at line 557 of file Residue_graph_.hpp.

References CResidue_graph_Base::m_Atoms, and CResidue_graph_Base::m_set_State.

◆ SetAttribution() [1/2]

void CBiomol_descr_Base::SetAttribution ( CBiomol_descr_Base::TAttribution value)

Select the variant and set its data.

Parameters
valueReference to the data.

Definition at line 217 of file Biomol_descr_.cpp.

References CObject::AddReference(), CBiomol_descr_Base::e_Attribution, CBiomol_descr_Base::m_choice, CBiomol_descr_Base::m_object, CBiomol_descr_Base::ResetSelection(), and value.

◆ SetAttribution() [2/2]

CBiomol_descr_Base::TAttribution & CBiomol_descr_Base::SetAttribution ( void  )

Select the variant.

Returns
Reference to the variant data.

Definition at line 211 of file Biomol_descr_.cpp.

References CBiomol_descr_Base::e_Attribution, eDoNotResetVariant, CBiomol_descr_Base::m_object, and CBiomol_descr_Base::Select().

◆ SetBiostruc() [1/2]

void CResidue_graph_pntr_Base::SetBiostruc ( CResidue_graph_pntr_Base::TBiostruc value)

Select the variant and set its data.

Parameters
valueReference to the data.

Definition at line 127 of file Residue_graph_pntr_.cpp.

References CObject::AddReference(), CResidue_graph_pntr_Base::e_Biostruc, CResidue_graph_pntr_Base::m_choice, CResidue_graph_pntr_Base::m_object, CResidue_graph_pntr_Base::ResetSelection(), and value.

◆ SetBiostruc() [2/2]

CResidue_graph_pntr_Base::TBiostruc & CResidue_graph_pntr_Base::SetBiostruc ( void  )

Select the variant.

Returns
Reference to the variant data.

Definition at line 121 of file Residue_graph_pntr_.cpp.

References CResidue_graph_pntr_Base::e_Biostruc, eDoNotResetVariant, CResidue_graph_pntr_Base::m_object, and CResidue_graph_pntr_Base::Select().

◆ SetBiostruc_id() [1/2]

void CBiostruc_graph_pntr_Base::SetBiostruc_id ( CBiostruc_graph_pntr_Base::TBiostruc_id value)

Assign a value to Biostruc_id data member.

Parameters
valueReference to value.

Definition at line 60 of file Biostruc_graph_pntr_.cpp.

References CBiostruc_graph_pntr_Base::m_Biostruc_id, and value.

◆ SetBiostruc_id() [2/2]

CBiostruc_graph_pntr_Base::TBiostruc_id & CBiostruc_graph_pntr_Base::SetBiostruc_id ( void  )
inline

Assign a value to Biostruc_id data member.

Returns
Reference to the data value.

Definition at line 223 of file Biostruc_graph_pntr_.hpp.

References CBiostruc_graph_pntr_Base::m_Biostruc_id, and CBiostruc_graph_pntr_Base::ResetBiostruc_id().

◆ SetBiostruc_residue_graph_set_id() [1/2]

void CBiostruc_residue_graph_set_pntr_Base::SetBiostruc_residue_graph_set_id ( CBiostruc_residue_graph_set_pntr_Base::TBiostruc_residue_graph_set_id value)

Assign a value to Biostruc_residue_graph_set_id data member.

Parameters
valueReference to value.

Definition at line 60 of file Biost_resid_graph_set_pntr_.cpp.

References CBiostruc_residue_graph_set_pntr_Base::m_Biostruc_residue_graph_set_id, and value.

◆ SetBiostruc_residue_graph_set_id() [2/2]

CBiostruc_residue_graph_set_pntr_Base::TBiostruc_residue_graph_set_id & CBiostruc_residue_graph_set_pntr_Base::SetBiostruc_residue_graph_set_id ( void  )
inline

Assign a value to Biostruc_residue_graph_set_id data member.

Returns
Reference to the data value.

Definition at line 223 of file Biost_resid_graph_set_pntr_.hpp.

References CBiostruc_residue_graph_set_pntr_Base::m_Biostruc_residue_graph_set_id, and CBiostruc_residue_graph_set_pntr_Base::ResetBiostruc_residue_graph_set_id().

◆ SetBond_order() [1/4]

void CInter_residue_bond_Base::SetBond_order ( CInter_residue_bond_Base::TBond_order  value)
inline

Assign a value to Bond_order data member.

Parameters
valueValue to assign

Definition at line 345 of file Inter_residue_bond_.hpp.

References CInter_residue_bond_Base::m_Bond_order, CInter_residue_bond_Base::m_set_State, and value.

◆ SetBond_order() [2/4]

void CIntra_residue_bond_Base::SetBond_order ( CIntra_residue_bond_Base::TBond_order  value)
inline

Assign a value to Bond_order data member.

Parameters
valueValue to assign

Definition at line 373 of file Intra_residue_bond_.hpp.

References CIntra_residue_bond_Base::m_Bond_order, CIntra_residue_bond_Base::m_set_State, and value.

◆ SetBond_order() [3/4]

CInter_residue_bond_Base::TBond_order & CInter_residue_bond_Base::SetBond_order ( void  )
inline

Assign a value to Bond_order data member.

Returns
Reference to the data value.

Definition at line 352 of file Inter_residue_bond_.hpp.

References CInter_residue_bond_Base::IsSetBond_order(), CInter_residue_bond_Base::m_Bond_order, CInter_residue_bond_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetBond_order() [4/4]

CIntra_residue_bond_Base::TBond_order & CIntra_residue_bond_Base::SetBond_order ( void  )
inline

Assign a value to Bond_order data member.

Returns
Reference to the data value.

Definition at line 380 of file Intra_residue_bond_.hpp.

References CIntra_residue_bond_Base::IsSetBond_order(), CIntra_residue_bond_Base::m_Bond_order, CIntra_residue_bond_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetBonds()

CResidue_graph_Base::TBonds & CResidue_graph_Base::SetBonds ( void  )
inline

Assign a value to Bonds data member.

Returns
Reference to the data value.

Definition at line 582 of file Residue_graph_.hpp.

References CResidue_graph_Base::m_Bonds, and CResidue_graph_Base::m_set_State.

◆ SetC() [1/2]

void CChiral_center_Base::SetC ( const TC value)
inline

Assign a value to C data member.

Parameters
valueValue to assign

Definition at line 364 of file Chiral_center_.hpp.

References CChiral_center_Base::m_C, CChiral_center_Base::m_set_State, and value.

◆ SetC() [2/2]

CChiral_center_Base::TC & CChiral_center_Base::SetC ( void  )
inline

Assign a value to C data member.

Returns
Reference to the data value.

Definition at line 371 of file Chiral_center_.hpp.

References CChiral_center_Base::m_C, and CChiral_center_Base::m_set_State.

◆ SetChiral_centers()

CResidue_graph_Base::TChiral_centers & CResidue_graph_Base::SetChiral_centers ( void  )
inline

Assign a value to Chiral_centers data member.

Returns
Reference to the data value.

Definition at line 607 of file Residue_graph_.hpp.

References CResidue_graph_Base::m_Chiral_centers, and CResidue_graph_Base::m_set_State.

◆ SetDescr() [1/3]

CBiostruc_graph_Base::TDescr & CBiostruc_graph_Base::SetDescr ( void  )
inline

Assign a value to Descr data member.

Returns
Reference to the data value.

Definition at line 293 of file Biostruc_graph_.hpp.

References CBiostruc_graph_Base::m_Descr, and CBiostruc_graph_Base::m_set_State.

◆ SetDescr() [2/3]

CMolecule_graph_Base::TDescr & CMolecule_graph_Base::SetDescr ( void  )
inline

Assign a value to Descr data member.

Returns
Reference to the data value.

Definition at line 437 of file Molecule_graph_.hpp.

References CMolecule_graph_Base::m_Descr, and CMolecule_graph_Base::m_set_State.

◆ SetDescr() [3/3]

CResidue_graph_Base::TDescr & CResidue_graph_Base::SetDescr ( void  )
inline

Assign a value to Descr data member.

Returns
Reference to the data value.

Definition at line 460 of file Residue_graph_.hpp.

References CResidue_graph_Base::m_Descr, and CResidue_graph_Base::m_set_State.

◆ SetElement() [1/2]

void CAtom_Base::SetElement ( CAtom_Base::TElement  value)
inline

Assign a value to Element data member.

Parameters
valueValue to assign

Definition at line 587 of file Atom_.hpp.

References CAtom_Base::m_Element, CAtom_Base::m_set_State, and value.

◆ SetElement() [2/2]

CAtom_Base::TElement & CAtom_Base::SetElement ( void  )
inline

Assign a value to Element data member.

Returns
Reference to the data value.

Definition at line 594 of file Atom_.hpp.

References CAtom_Base::IsSetElement(), CAtom_Base::m_Element, CAtom_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetId() [1/8]

void CAtom_Base::SetId ( const TId value)
inline

Assign a value to Id data member.

Parameters
valueValue to assign

Definition at line 473 of file Atom_.hpp.

References CAtom_Base::m_Id, CAtom_Base::m_set_State, and value.

◆ SetId() [2/8]

void CMolecule_graph_Base::SetId ( const TId value)
inline

Assign a value to Id data member.

Parameters
valueValue to assign

Definition at line 405 of file Molecule_graph_.hpp.

References CMolecule_graph_Base::m_Id, CMolecule_graph_Base::m_set_State, and value.

◆ SetId() [3/8]

void CResidue_Base::SetId ( const TId value)
inline

Assign a value to Id data member.

Parameters
valueValue to assign

Definition at line 274 of file Residue_.hpp.

References CResidue_Base::m_Id, CResidue_Base::m_set_State, and value.

◆ SetId() [4/8]

void CResidue_graph_Base::SetId ( const TId value)
inline

Assign a value to Id data member.

Parameters
valueValue to assign

Definition at line 428 of file Residue_graph_.hpp.

References CResidue_graph_Base::m_Id, CResidue_graph_Base::m_set_State, and value.

◆ SetId() [5/8]

CAtom_Base::TId & CAtom_Base::SetId ( void  )
inline

Assign a value to Id data member.

Returns
Reference to the data value.

Definition at line 480 of file Atom_.hpp.

References CAtom_Base::m_Id, and CAtom_Base::m_set_State.

◆ SetId() [6/8]

CMolecule_graph_Base::TId & CMolecule_graph_Base::SetId ( void  )
inline

Assign a value to Id data member.

Returns
Reference to the data value.

Definition at line 412 of file Molecule_graph_.hpp.

References CMolecule_graph_Base::m_Id, and CMolecule_graph_Base::m_set_State.

◆ SetId() [7/8]

CResidue_Base::TId & CResidue_Base::SetId ( void  )
inline

Assign a value to Id data member.

Returns
Reference to the data value.

Definition at line 281 of file Residue_.hpp.

References CResidue_Base::m_Id, and CResidue_Base::m_set_State.

◆ SetId() [8/8]

CResidue_graph_Base::TId & CResidue_graph_Base::SetId ( void  )
inline

Assign a value to Id data member.

Returns
Reference to the data value.

Definition at line 435 of file Residue_graph_.hpp.

References CResidue_graph_Base::m_Id, and CResidue_graph_Base::m_set_State.

◆ SetInter_molecule_bonds()

CBiostruc_graph_Base::TInter_molecule_bonds & CBiostruc_graph_Base::SetInter_molecule_bonds ( void  )
inline

Assign a value to Inter_molecule_bonds data member.

Returns
Reference to the data value.

Definition at line 343 of file Biostruc_graph_.hpp.

References CBiostruc_graph_Base::m_Inter_molecule_bonds, and CBiostruc_graph_Base::m_set_State.

◆ SetInter_residue_bonds()

CMolecule_graph_Base::TInter_residue_bonds & CMolecule_graph_Base::SetInter_residue_bonds ( void  )
inline

Assign a value to Inter_residue_bonds data member.

Returns
Reference to the data value.

Definition at line 508 of file Molecule_graph_.hpp.

References CMolecule_graph_Base::m_Inter_residue_bonds, and CMolecule_graph_Base::m_set_State.

◆ SetIonizable_proton() [1/2]

void CAtom_Base::SetIonizable_proton ( CAtom_Base::TIonizable_proton  value)
inline

Assign a value to Ionizable_proton data member.

Parameters
valueValue to assign

Definition at line 634 of file Atom_.hpp.

References CAtom_Base::m_Ionizable_proton, CAtom_Base::m_set_State, and value.

◆ SetIonizable_proton() [2/2]

CAtom_Base::TIonizable_proton & CAtom_Base::SetIonizable_proton ( void  )
inline

Assign a value to Ionizable_proton data member.

Returns
Reference to the data value.

Definition at line 641 of file Atom_.hpp.

References CAtom_Base::IsSetIonizable_proton(), CAtom_Base::m_Ionizable_proton, CAtom_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetIupac_code() [1/2]

CAtom_Base::TIupac_code & CAtom_Base::SetIupac_code ( void  )
inline

Assign a value to Iupac_code data member.

Returns
Reference to the data value.

Definition at line 552 of file Atom_.hpp.

References CAtom_Base::m_Iupac_code, and CAtom_Base::m_set_State.

◆ SetIupac_code() [2/2]

CResidue_graph_Base::TIupac_code & CResidue_graph_Base::SetIupac_code ( void  )
inline

Assign a value to Iupac_code data member.

Returns
Reference to the data value.

Definition at line 532 of file Residue_graph_.hpp.

References CResidue_graph_Base::m_Iupac_code, and CResidue_graph_Base::m_set_State.

◆ SetLocal() [1/2]

void CResidue_graph_pntr_Base::SetLocal ( const TLocal value)

Select the variant and set its data.

Parameters
valueVariant data.

Definition at line 109 of file Residue_graph_pntr_.cpp.

References CResidue_graph_pntr_Base::e_Local, eDoNotResetVariant, CResidue_graph_pntr_Base::m_Local, CResidue_graph_pntr_Base::Select(), and value.

◆ SetLocal() [2/2]

CResidue_graph_pntr_Base::TLocal & CResidue_graph_pntr_Base::SetLocal ( void  )
inline

Select the variant.

Returns
Reference to the variant data.

Definition at line 310 of file Residue_graph_pntr_.hpp.

References CResidue_graph_pntr_Base::e_Local, eDoNotResetVariant, CResidue_graph_pntr_Base::m_Local, and CResidue_graph_pntr_Base::Select().

◆ SetMolecule_graphs()

CBiostruc_graph_Base::TMolecule_graphs & CBiostruc_graph_Base::SetMolecule_graphs ( void  )
inline

Assign a value to Molecule_graphs data member.

Returns
Reference to the data value.

Definition at line 318 of file Biostruc_graph_.hpp.

References CBiostruc_graph_Base::m_Molecule_graphs, and CBiostruc_graph_Base::m_set_State.

◆ SetMolecule_id() [1/2]

void CAtom_pntr_Base::SetMolecule_id ( const TMolecule_id value)
inline

Assign a value to Molecule_id data member.

Parameters
valueValue to assign

Definition at line 270 of file Atom_pntr_.hpp.

References CAtom_pntr_Base::m_Molecule_id, CAtom_pntr_Base::m_set_State, and value.

◆ SetMolecule_id() [2/2]

CAtom_pntr_Base::TMolecule_id & CAtom_pntr_Base::SetMolecule_id ( void  )
inline

Assign a value to Molecule_id data member.

Returns
Reference to the data value.

Definition at line 277 of file Atom_pntr_.hpp.

References CAtom_pntr_Base::m_Molecule_id, and CAtom_pntr_Base::m_set_State.

◆ SetMolecule_type() [1/2]

void CBiomol_descr_Base::SetMolecule_type ( CBiomol_descr_Base::TMolecule_type  value)
inline

Select the variant and set its data.

Parameters
valueVariant data.

Definition at line 655 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::e_Molecule_type, eDoNotResetVariant, CBiomol_descr_Base::m_Molecule_type, CBiomol_descr_Base::Select(), and value.

◆ SetMolecule_type() [2/2]

CBiomol_descr_Base::TMolecule_type & CBiomol_descr_Base::SetMolecule_type ( void  )
inline

Select the variant.

Returns
Reference to the variant data.

Definition at line 648 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::e_Molecule_type, eDoNotResetVariant, CBiomol_descr_Base::m_Molecule_type, and CBiomol_descr_Base::Select().

◆ SetN1() [1/2]

void CChiral_center_Base::SetN1 ( const TN1 value)
inline

Assign a value to N1 data member.

Parameters
valueValue to assign

Definition at line 406 of file Chiral_center_.hpp.

References CChiral_center_Base::m_N1, CChiral_center_Base::m_set_State, and value.

◆ SetN1() [2/2]

CChiral_center_Base::TN1 & CChiral_center_Base::SetN1 ( void  )
inline

Assign a value to N1 data member.

Returns
Reference to the data value.

Definition at line 413 of file Chiral_center_.hpp.

References CChiral_center_Base::m_N1, and CChiral_center_Base::m_set_State.

◆ SetN2() [1/2]

void CChiral_center_Base::SetN2 ( const TN2 value)
inline

Assign a value to N2 data member.

Parameters
valueValue to assign

Definition at line 448 of file Chiral_center_.hpp.

References CChiral_center_Base::m_N2, CChiral_center_Base::m_set_State, and value.

◆ SetN2() [2/2]

CChiral_center_Base::TN2 & CChiral_center_Base::SetN2 ( void  )
inline

Assign a value to N2 data member.

Returns
Reference to the data value.

Definition at line 455 of file Chiral_center_.hpp.

References CChiral_center_Base::m_N2, and CChiral_center_Base::m_set_State.

◆ SetN3() [1/2]

void CChiral_center_Base::SetN3 ( const TN3 value)
inline

Assign a value to N3 data member.

Parameters
valueValue to assign

Definition at line 490 of file Chiral_center_.hpp.

References CChiral_center_Base::m_N3, CChiral_center_Base::m_set_State, and value.

◆ SetN3() [2/2]

CChiral_center_Base::TN3 & CChiral_center_Base::SetN3 ( void  )
inline

Assign a value to N3 data member.

Returns
Reference to the data value.

Definition at line 497 of file Chiral_center_.hpp.

References CChiral_center_Base::m_N3, and CChiral_center_Base::m_set_State.

◆ SetName() [1/8]

void CAtom_Base::SetName ( const TName value)
inline

Assign a value to Name data member.

Parameters
valueValue to assign

Definition at line 508 of file Atom_.hpp.

References CAtom_Base::m_Name, CAtom_Base::m_set_State, and value.

◆ SetName() [2/8]

void CBiomol_descr_Base::SetName ( const TName value)

Select the variant and set its data.

Parameters
valueVariant data.

Definition at line 153 of file Biomol_descr_.cpp.

References CBiomol_descr_Base::e_Name, eDoNotResetVariant, CBiomol_descr_Base::m_string, CBiomol_descr_Base::Select(), and value.

◆ SetName() [3/8]

void CResidue_Base::SetName ( const TName value)
inline

Assign a value to Name data member.

Parameters
valueValue to assign

Definition at line 309 of file Residue_.hpp.

References CResidue_Base::m_Name, CResidue_Base::m_set_State, and value.

◆ SetName() [4/8]

void CAtom_Base::SetName ( CAtom_Base::TName &&  value)
inline

Definition at line 515 of file Atom_.hpp.

References CAtom_Base::m_Name, CAtom_Base::m_set_State, and value.

◆ SetName() [5/8]

void CResidue_Base::SetName ( CResidue_Base::TName &&  value)
inline

Definition at line 316 of file Residue_.hpp.

References CResidue_Base::m_Name, CResidue_Base::m_set_State, and value.

◆ SetName() [6/8]

CAtom_Base::TName & CAtom_Base::SetName ( void  )
inline

Assign a value to Name data member.

Returns
Reference to the data value.

Definition at line 522 of file Atom_.hpp.

References CAtom_Base::IsSetName(), CAtom_Base::m_Name, CAtom_Base::m_set_State, and CSerialObject::UnassignedString().

◆ SetName() [7/8]

CBiomol_descr_Base::TName & CBiomol_descr_Base::SetName ( void  )
inline

Select the variant.

Returns
Reference to the variant data.

Definition at line 509 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::e_Name, eDoNotResetVariant, CBiomol_descr_Base::m_string, and CBiomol_descr_Base::Select().

◆ SetName() [8/8]

CResidue_Base::TName & CResidue_Base::SetName ( void  )
inline

Assign a value to Name data member.

Returns
Reference to the data value.

Definition at line 323 of file Residue_.hpp.

References CResidue_Base::IsSetName(), CResidue_Base::m_Name, CResidue_Base::m_set_State, and CSerialObject::UnassignedString().

◆ SetOrganism() [1/2]

void CBiomol_descr_Base::SetOrganism ( CBiomol_descr_Base::TOrganism value)

Select the variant and set its data.

Parameters
valueReference to the data.

Definition at line 195 of file Biomol_descr_.cpp.

References CObject::AddReference(), CBiomol_descr_Base::e_Organism, CBiomol_descr_Base::m_choice, CBiomol_descr_Base::m_object, CBiomol_descr_Base::ResetSelection(), and value.

◆ SetOrganism() [2/2]

CBiomol_descr_Base::TOrganism & CBiomol_descr_Base::SetOrganism ( void  )

Select the variant.

Returns
Reference to the variant data.

Definition at line 189 of file Biomol_descr_.cpp.

References CBiomol_descr_Base::e_Organism, eDoNotResetVariant, CBiomol_descr_Base::m_object, and CBiomol_descr_Base::Select().

◆ SetOther_comment() [1/2]

void CBiomol_descr_Base::SetOther_comment ( const TOther_comment value)

Select the variant and set its data.

Parameters
valueVariant data.

Definition at line 177 of file Biomol_descr_.cpp.

References CBiomol_descr_Base::e_Other_comment, eDoNotResetVariant, CBiomol_descr_Base::m_string, CBiomol_descr_Base::Select(), and value.

◆ SetOther_comment() [2/2]

CBiomol_descr_Base::TOther_comment & CBiomol_descr_Base::SetOther_comment ( void  )
inline

Select the variant.

Returns
Reference to the variant data.

Definition at line 589 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::e_Other_comment, eDoNotResetVariant, CBiomol_descr_Base::m_string, and CBiomol_descr_Base::Select().

◆ SetPdb_class() [1/2]

void CBiomol_descr_Base::SetPdb_class ( const TPdb_class value)

Select the variant and set its data.

Parameters
valueVariant data.

Definition at line 159 of file Biomol_descr_.cpp.

References CBiomol_descr_Base::e_Pdb_class, eDoNotResetVariant, CBiomol_descr_Base::m_string, CBiomol_descr_Base::Select(), and value.

◆ SetPdb_class() [2/2]

CBiomol_descr_Base::TPdb_class & CBiomol_descr_Base::SetPdb_class ( void  )
inline

Select the variant.

Returns
Reference to the variant data.

Definition at line 529 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::e_Pdb_class, eDoNotResetVariant, CBiomol_descr_Base::m_string, and CBiomol_descr_Base::Select().

◆ SetPdb_comment() [1/2]

void CBiomol_descr_Base::SetPdb_comment ( const TPdb_comment value)

Select the variant and set its data.

Parameters
valueVariant data.

Definition at line 171 of file Biomol_descr_.cpp.

References CBiomol_descr_Base::e_Pdb_comment, eDoNotResetVariant, CBiomol_descr_Base::m_string, CBiomol_descr_Base::Select(), and value.

◆ SetPdb_comment() [2/2]

CBiomol_descr_Base::TPdb_comment & CBiomol_descr_Base::SetPdb_comment ( void  )
inline

Select the variant.

Returns
Reference to the variant data.

Definition at line 569 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::e_Pdb_comment, eDoNotResetVariant, CBiomol_descr_Base::m_string, and CBiomol_descr_Base::Select().

◆ SetPdb_source() [1/2]

void CBiomol_descr_Base::SetPdb_source ( const TPdb_source value)

Select the variant and set its data.

Parameters
valueVariant data.

Definition at line 165 of file Biomol_descr_.cpp.

References CBiomol_descr_Base::e_Pdb_source, eDoNotResetVariant, CBiomol_descr_Base::m_string, CBiomol_descr_Base::Select(), and value.

◆ SetPdb_source() [2/2]

CBiomol_descr_Base::TPdb_source & CBiomol_descr_Base::SetPdb_source ( void  )
inline

Select the variant.

Returns
Reference to the variant data.

Definition at line 549 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::e_Pdb_source, eDoNotResetVariant, CBiomol_descr_Base::m_string, and CBiomol_descr_Base::Select().

◆ SetResidue_graph() [1/2]

void CResidue_Base::SetResidue_graph ( CResidue_Base::TResidue_graph value)

Assign a value to Residue_graph data member.

Parameters
valueReference to value.

Definition at line 66 of file Residue_.cpp.

References CResidue_Base::m_Residue_graph, and value.

◆ SetResidue_graph() [2/2]

CResidue_Base::TResidue_graph & CResidue_Base::SetResidue_graph ( void  )
inline

Assign a value to Residue_graph data member.

Returns
Reference to the data value.

Definition at line 356 of file Residue_.hpp.

References CResidue_Base::m_Residue_graph, and CResidue_Base::ResetResidue_graph().

◆ SetResidue_graph_id() [1/4]

void CBiostruc_residue_graph_set_pntr_Base::SetResidue_graph_id ( const TResidue_graph_id value)
inline

Assign a value to Residue_graph_id data member.

Parameters
valueValue to assign

Definition at line 260 of file Biost_resid_graph_set_pntr_.hpp.

References CBiostruc_residue_graph_set_pntr_Base::m_Residue_graph_id, CBiostruc_residue_graph_set_pntr_Base::m_set_State, and value.

◆ SetResidue_graph_id() [2/4]

void CBiostruc_graph_pntr_Base::SetResidue_graph_id ( const TResidue_graph_id value)
inline

Assign a value to Residue_graph_id data member.

Parameters
valueValue to assign

Definition at line 260 of file Biostruc_graph_pntr_.hpp.

References CBiostruc_graph_pntr_Base::m_Residue_graph_id, CBiostruc_graph_pntr_Base::m_set_State, and value.

◆ SetResidue_graph_id() [3/4]

CBiostruc_residue_graph_set_pntr_Base::TResidue_graph_id & CBiostruc_residue_graph_set_pntr_Base::SetResidue_graph_id ( void  )
inline

Assign a value to Residue_graph_id data member.

Returns
Reference to the data value.

Definition at line 267 of file Biost_resid_graph_set_pntr_.hpp.

References CBiostruc_residue_graph_set_pntr_Base::m_Residue_graph_id, and CBiostruc_residue_graph_set_pntr_Base::m_set_State.

◆ SetResidue_graph_id() [4/4]

CBiostruc_graph_pntr_Base::TResidue_graph_id & CBiostruc_graph_pntr_Base::SetResidue_graph_id ( void  )
inline

Assign a value to Residue_graph_id data member.

Returns
Reference to the data value.

Definition at line 267 of file Biostruc_graph_pntr_.hpp.

References CBiostruc_graph_pntr_Base::m_Residue_graph_id, and CBiostruc_graph_pntr_Base::m_set_State.

◆ SetResidue_graphs()

CBiostruc_graph_Base::TResidue_graphs & CBiostruc_graph_Base::SetResidue_graphs ( void  )
inline

Assign a value to Residue_graphs data member.

Returns
Reference to the data value.

Definition at line 368 of file Biostruc_graph_.hpp.

References CBiostruc_graph_Base::m_Residue_graphs, and CBiostruc_graph_Base::m_set_State.

◆ SetResidue_id() [1/2]

void CAtom_pntr_Base::SetResidue_id ( const TResidue_id value)
inline

Assign a value to Residue_id data member.

Parameters
valueValue to assign

Definition at line 312 of file Atom_pntr_.hpp.

References CAtom_pntr_Base::m_Residue_id, CAtom_pntr_Base::m_set_State, and value.

◆ SetResidue_id() [2/2]

CAtom_pntr_Base::TResidue_id & CAtom_pntr_Base::SetResidue_id ( void  )
inline

Assign a value to Residue_id data member.

Returns
Reference to the data value.

Definition at line 319 of file Atom_pntr_.hpp.

References CAtom_pntr_Base::m_Residue_id, and CAtom_pntr_Base::m_set_State.

◆ SetResidue_sequence()

CMolecule_graph_Base::TResidue_sequence & CMolecule_graph_Base::SetResidue_sequence ( void  )
inline

Assign a value to Residue_sequence data member.

Returns
Reference to the data value.

Definition at line 483 of file Molecule_graph_.hpp.

References CMolecule_graph_Base::m_Residue_sequence, and CMolecule_graph_Base::m_set_State.

◆ SetResidue_type() [1/2]

void CResidue_graph_Base::SetResidue_type ( CResidue_graph_Base::TResidue_type  value)
inline

Assign a value to Residue_type data member.

Parameters
valueValue to assign

Definition at line 495 of file Residue_graph_.hpp.

References CResidue_graph_Base::m_Residue_type, CResidue_graph_Base::m_set_State, and value.

◆ SetResidue_type() [2/2]

CResidue_graph_Base::TResidue_type & CResidue_graph_Base::SetResidue_type ( void  )
inline

Assign a value to Residue_type data member.

Returns
Reference to the data value.

Definition at line 502 of file Residue_graph_.hpp.

References CResidue_graph_Base::IsSetResidue_type(), CResidue_graph_Base::m_Residue_type, CResidue_graph_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetSeq_id() [1/2]

void CMolecule_graph_Base::SetSeq_id ( CMolecule_graph_Base::TSeq_id value)

Assign a value to Seq_id data member.

Parameters
valueReference to value.

Definition at line 65 of file Molecule_graph_.cpp.

References CMolecule_graph_Base::m_Seq_id, and value.

◆ SetSeq_id() [2/2]

CMolecule_graph_Base::TSeq_id & CMolecule_graph_Base::SetSeq_id ( void  )

Assign a value to Seq_id data member.

Returns
Reference to the data value.

Definition at line 70 of file Molecule_graph_.cpp.

References CMolecule_graph_Base::m_Seq_id.

◆ SetSid() [1/2]

void CMolecule_graph_Base::SetSid ( const TSid value)
inline

Assign a value to Sid data member.

Parameters
valueValue to assign

Definition at line 543 of file Molecule_graph_.hpp.

References CMolecule_graph_Base::m_set_State, CMolecule_graph_Base::m_Sid, and value.

◆ SetSid() [2/2]

CMolecule_graph_Base::TSid & CMolecule_graph_Base::SetSid ( void  )
inline

Assign a value to Sid data member.

Returns
Reference to the data value.

Definition at line 550 of file Molecule_graph_.hpp.

References CMolecule_graph_Base::m_set_State, and CMolecule_graph_Base::m_Sid.

◆ SetSign() [1/2]

void CChiral_center_Base::SetSign ( CChiral_center_Base::TSign  value)
inline

Assign a value to Sign data member.

Parameters
valueValue to assign

Definition at line 532 of file Chiral_center_.hpp.

References CChiral_center_Base::m_set_State, CChiral_center_Base::m_Sign, and value.

◆ SetSign() [2/2]

CChiral_center_Base::TSign & CChiral_center_Base::SetSign ( void  )
inline

Assign a value to Sign data member.

Returns
Reference to the data value.

Definition at line 539 of file Chiral_center_.hpp.

References CChiral_center_Base::IsSetSign(), CChiral_center_Base::m_set_State, CChiral_center_Base::m_Sign, and CSerialObject::UnassignedByte().

◆ SetStandard() [1/2]

void CResidue_graph_pntr_Base::SetStandard ( CResidue_graph_pntr_Base::TStandard value)

Select the variant and set its data.

Parameters
valueReference to the data.

Definition at line 149 of file Residue_graph_pntr_.cpp.

References CObject::AddReference(), CResidue_graph_pntr_Base::e_Standard, CResidue_graph_pntr_Base::m_choice, CResidue_graph_pntr_Base::m_object, CResidue_graph_pntr_Base::ResetSelection(), and value.

◆ SetStandard() [2/2]

CResidue_graph_pntr_Base::TStandard & CResidue_graph_pntr_Base::SetStandard ( void  )

Select the variant.

Returns
Reference to the variant data.

Definition at line 143 of file Residue_graph_pntr_.cpp.

References CResidue_graph_pntr_Base::e_Standard, eDoNotResetVariant, CResidue_graph_pntr_Base::m_object, and CResidue_graph_pntr_Base::Select().

◆ ThrowInvalidSelection() [1/2]

void CBiomol_descr_Base::ThrowInvalidSelection ( E_Choice  index) const

Throw 'InvalidSelection' exception.

Parameters
indexExpected selection.

Definition at line 148 of file Biomol_descr_.cpp.

References DIAG_COMPILE_INFO, CBiomol_descr_Base::m_choice, and CBiomol_descr_Base::sm_SelectionNames.

Referenced by CBiomol_descr_Base::CheckSelected().

◆ ThrowInvalidSelection() [2/2]

void CResidue_graph_pntr_Base::ThrowInvalidSelection ( E_Choice  index) const

Throw 'InvalidSelection' exception.

Parameters
indexExpected selection.

Definition at line 104 of file Residue_graph_pntr_.cpp.

References DIAG_COMPILE_INFO, CResidue_graph_pntr_Base::m_choice, and CResidue_graph_pntr_Base::sm_SelectionNames.

Referenced by CResidue_graph_pntr_Base::CheckSelected().

◆ Which() [1/2]

CBiomol_descr_Base::E_Choice CBiomol_descr_Base::Which ( void  ) const
inline

Which variant is currently selected.

Returns
Choice state enumerator.

Definition at line 467 of file Biomol_descr_.hpp.

References CBiomol_descr_Base::m_choice.

◆ Which() [2/2]

CResidue_graph_pntr_Base::E_Choice CResidue_graph_pntr_Base::Which ( void  ) const
inline

Which variant is currently selected.

Returns
Choice state enumerator.

Definition at line 268 of file Residue_graph_pntr_.hpp.

References CResidue_graph_pntr_Base::m_choice.

◆ ~CAtom()

CAtom::~CAtom ( void  )

Definition at line 50 of file Atom.cpp.

◆ ~CAtom_Base()

CAtom_Base::~CAtom_Base ( void  )
virtual

Definition at line 215 of file Atom_.cpp.

◆ ~CAtom_pntr()

CAtom_pntr::~CAtom_pntr ( void  )

Definition at line 50 of file Atom_pntr.cpp.

◆ ~CAtom_pntr_Base()

CAtom_pntr_Base::~CAtom_pntr_Base ( void  )
virtual

Definition at line 77 of file Atom_pntr_.cpp.

◆ ~CAtom_pntr_set()

CAtom_pntr_set::~CAtom_pntr_set ( void  )

Definition at line 50 of file Atom_pntr_set.cpp.

◆ ~CAtom_pntr_set_Base()

CAtom_pntr_set_Base::~CAtom_pntr_set_Base ( void  )
virtual

Definition at line 74 of file Atom_pntr_set_.cpp.

◆ ~CBiomol_descr()

CBiomol_descr::~CBiomol_descr ( void  )

Definition at line 50 of file Biomol_descr.cpp.

◆ ~CBiomol_descr_Base()

CBiomol_descr_Base::~CBiomol_descr_Base ( void  )
virtual

Definition at line 254 of file Biomol_descr_.cpp.

References CBiomol_descr_Base::Reset().

◆ ~CBiostruc_graph()

CBiostruc_graph::~CBiostruc_graph ( void  )

Definition at line 50 of file Biostruc_graph.cpp.

◆ ~CBiostruc_graph_Base()

CBiostruc_graph_Base::~CBiostruc_graph_Base ( void  )
virtual

Definition at line 106 of file Biostruc_graph_.cpp.

◆ ~CBiostruc_graph_pntr()

CBiostruc_graph_pntr::~CBiostruc_graph_pntr ( void  )

Definition at line 50 of file Biostruc_graph_pntr.cpp.

◆ ~CBiostruc_graph_pntr_Base()

CBiostruc_graph_pntr_Base::~CBiostruc_graph_pntr_Base ( void  )
virtual

Definition at line 93 of file Biostruc_graph_pntr_.cpp.

◆ ~CBiostruc_residue_graph_set_pntr()

CBiostruc_residue_graph_set_pntr::~CBiostruc_residue_graph_set_pntr ( void  )

Definition at line 50 of file Biost_resid_graph_set_pntr.cpp.

◆ ~CBiostruc_residue_graph_set_pntr_Base()

CBiostruc_residue_graph_set_pntr_Base::~CBiostruc_residue_graph_set_pntr_Base ( void  )
virtual

Definition at line 93 of file Biost_resid_graph_set_pntr_.cpp.

◆ ~CChiral_center()

CChiral_center::~CChiral_center ( void  )

Definition at line 50 of file Chiral_center.cpp.

◆ ~CChiral_center_Base()

CChiral_center_Base::~CChiral_center_Base ( void  )
virtual

Definition at line 90 of file Chiral_center_.cpp.

◆ ~CInter_residue_bond()

CInter_residue_bond::~CInter_residue_bond ( void  )

Definition at line 50 of file Inter_residue_bond.cpp.

◆ ~CInter_residue_bond_Base()

CInter_residue_bond_Base::~CInter_residue_bond_Base ( void  )
virtual

Definition at line 124 of file Inter_residue_bond_.cpp.

◆ ~CIntra_residue_bond()

CIntra_residue_bond::~CIntra_residue_bond ( void  )

Definition at line 50 of file Intra_residue_bond.cpp.

◆ ~CIntra_residue_bond_Base()

CIntra_residue_bond_Base::~CIntra_residue_bond_Base ( void  )
virtual

Definition at line 91 of file Intra_residue_bond_.cpp.

◆ ~CMolecule_graph()

CMolecule_graph::~CMolecule_graph ( void  )

Definition at line 50 of file Molecule_graph.cpp.

◆ ~CMolecule_graph_Base()

CMolecule_graph_Base::~CMolecule_graph_Base ( void  )
virtual

Definition at line 122 of file Molecule_graph_.cpp.

◆ ~CResidue()

CResidue::~CResidue ( void  )

Definition at line 50 of file Residue.cpp.

◆ ~CResidue_Base()

CResidue_Base::~CResidue_Base ( void  )
virtual

Definition at line 101 of file Residue_.cpp.

◆ ~CResidue_graph()

CResidue_graph::~CResidue_graph ( void  )

Definition at line 50 of file Residue_graph.cpp.

◆ ~CResidue_graph_Base()

CResidue_graph_Base::~CResidue_graph_Base ( void  )
virtual

Definition at line 130 of file Residue_graph_.cpp.

◆ ~CResidue_graph_pntr()

CResidue_graph_pntr::~CResidue_graph_pntr ( void  )

Definition at line 50 of file Residue_graph_pntr.cpp.

◆ ~CResidue_graph_pntr_Base()

CResidue_graph_pntr_Base::~CResidue_graph_pntr_Base ( void  )
virtual

Definition at line 180 of file Residue_graph_pntr_.cpp.

References CResidue_graph_pntr_Base::Reset().

Variable Documentation

◆ 

union { ... }

◆ 

union { ... }

◆ m_Assembly_type [1/2]

TAssembly_type CBiomol_descr_Base::m_Assembly_type

◆  [2/2]

TAssembly_type { ... } ::m_Assembly_type

Definition at line 450 of file Biomol_descr_.hpp.

◆ m_Atom_id

CAtom_id CAtom_pntr_Base::m_Atom_id
private

◆ m_Atom_id_1 [1/2]

CRef< TAtom_id_1 > CInter_residue_bond_Base::m_Atom_id_1
private

◆ m_Atom_id_1 [2/2]

CAtom_id CIntra_residue_bond_Base::m_Atom_id_1
private

◆ m_Atom_id_2 [1/2]

CRef< TAtom_id_2 > CInter_residue_bond_Base::m_Atom_id_2
private

◆ m_Atom_id_2 [2/2]

CAtom_id CIntra_residue_bond_Base::m_Atom_id_2
private

◆ m_Atoms

list< CRef< CAtom > > CResidue_graph_Base::m_Atoms
private

◆ m_Biostruc_id

CRef< TBiostruc_id > CBiostruc_graph_pntr_Base::m_Biostruc_id
private

◆ m_Biostruc_residue_graph_set_id

CRef< TBiostruc_residue_graph_set_id > CBiostruc_residue_graph_set_pntr_Base::m_Biostruc_residue_graph_set_id
private

◆ m_Bond_order [1/2]

int CInter_residue_bond_Base::m_Bond_order
private

◆ m_Bond_order [2/2]

int CIntra_residue_bond_Base::m_Bond_order
private

◆ m_Bonds

list< CRef< CIntra_residue_bond > > CResidue_graph_Base::m_Bonds
private

◆ m_C

CAtom_id CChiral_center_Base::m_C
private

◆ m_Chiral_centers

list< CRef< CChiral_center > > CResidue_graph_Base::m_Chiral_centers
private

◆ m_choice [1/2]

E_Choice CBiomol_descr_Base::m_choice
private

◆ m_choice [2/2]

E_Choice CResidue_graph_pntr_Base::m_choice
private

◆ m_data

list< CRef< CAtom_pntr > > CAtom_pntr_set_Base::m_data
private

◆ m_Descr [1/3]

list< CRef< CBiomol_descr > > CBiostruc_graph_Base::m_Descr
private

◆ m_Descr [2/3]

list< CRef< CBiomol_descr > > CMolecule_graph_Base::m_Descr
private

◆ m_Descr [3/3]

list< CRef< CBiomol_descr > > CResidue_graph_Base::m_Descr
private

◆ m_Element

EElement CAtom_Base::m_Element
private

◆ m_Id [1/4]

CAtom_id CAtom_Base::m_Id
private

Definition at line 428 of file Atom_.hpp.

Referenced by CAtom_Base::GetId(), CAtom_Base::ResetId(), and CAtom_Base::SetId().

◆ m_Id [2/4]

CMolecule_id CMolecule_graph_Base::m_Id
private

◆ m_Id [3/4]

CResidue_id CResidue_Base::m_Id
private

◆ m_Id [4/4]

CResidue_graph_id CResidue_graph_Base::m_Id
private

◆ m_Inter_molecule_bonds

list< CRef< CInter_residue_bond > > CBiostruc_graph_Base::m_Inter_molecule_bonds
private

◆ m_Inter_residue_bonds

list< CRef< CInter_residue_bond > > CMolecule_graph_Base::m_Inter_residue_bonds
private

◆ m_Ionizable_proton

EIonizable_proton CAtom_Base::m_Ionizable_proton
private

◆ m_Iupac_code [1/2]

list< string > CAtom_Base::m_Iupac_code
private

◆ m_Iupac_code [2/2]

list< string > CResidue_graph_Base::m_Iupac_code
private

◆ m_Local [1/2]

NCBI_NS_NCBI::CUnionBuffer<TLocal> CResidue_graph_pntr_Base::m_Local

◆  [2/2]

NCBI_NS_NCBI::CUnionBuffer<TLocal> { ... } ::m_Local

Definition at line 253 of file Residue_graph_pntr_.hpp.

◆ m_Molecule_graphs

list< CRef< CMolecule_graph > > CBiostruc_graph_Base::m_Molecule_graphs
private

◆ m_Molecule_id

CMolecule_id CAtom_pntr_Base::m_Molecule_id
private

◆ m_Molecule_type [1/2]

TMolecule_type CBiomol_descr_Base::m_Molecule_type

◆  [2/2]

TMolecule_type { ... } ::m_Molecule_type

Definition at line 451 of file Biomol_descr_.hpp.

◆ m_N1

CAtom_id CChiral_center_Base::m_N1
private

◆ m_N2

CAtom_id CChiral_center_Base::m_N2
private

◆ m_N3

CAtom_id CChiral_center_Base::m_N3
private

◆ m_Name [1/2]

string CAtom_Base::m_Name
private

Definition at line 429 of file Atom_.hpp.

Referenced by CAtom_Base::GetName(), CAtom_Base::ResetName(), and CAtom_Base::SetName().

◆ m_Name [2/2]

string CResidue_Base::m_Name
private

◆ m_object [1/4]

NCBI_NS_NCBI::CSerialObject* CBiomol_descr_Base::m_object

◆  [2/4]

NCBI_NS_NCBI::CSerialObject* { ... } ::m_object

Definition at line 453 of file Biomol_descr_.hpp.

◆ m_object [3/4]

NCBI_NS_NCBI::CSerialObject* CResidue_graph_pntr_Base::m_object

◆  [4/4]

NCBI_NS_NCBI::CSerialObject* { ... } ::m_object

Definition at line 254 of file Residue_graph_pntr_.hpp.

◆ m_Residue_graph

CRef< TResidue_graph > CResidue_Base::m_Residue_graph
private

◆ m_Residue_graph_id [1/2]

CResidue_graph_id CBiostruc_residue_graph_set_pntr_Base::m_Residue_graph_id
private

◆ m_Residue_graph_id [2/2]

CResidue_graph_id CBiostruc_graph_pntr_Base::m_Residue_graph_id
private

◆ m_Residue_graphs

list< CRef< CResidue_graph > > CBiostruc_graph_Base::m_Residue_graphs
private

◆ m_Residue_id

CResidue_id CAtom_pntr_Base::m_Residue_id
private

◆ m_Residue_sequence

list< CRef< CResidue > > CMolecule_graph_Base::m_Residue_sequence
private

◆ m_Residue_type

int CResidue_graph_Base::m_Residue_type
private

◆ m_Seq_id

CRef< TSeq_id > CMolecule_graph_Base::m_Seq_id
private

◆ m_set_State [1/12]

Uint4 CAtom_Base::m_set_State[1]
private

◆ m_set_State [2/12]

Uint4 CAtom_pntr_Base::m_set_State[1]
private

◆ m_set_State [3/12]

Uint4 CAtom_pntr_set_Base::m_set_State[1]
private

◆ m_set_State [4/12]

Uint4 CBiostruc_residue_graph_set_pntr_Base::m_set_State[1]
private

◆ m_set_State [5/12]

Uint4 CBiostruc_graph_Base::m_set_State[1]
private

◆ m_set_State [6/12]

Uint4 CBiostruc_graph_pntr_Base::m_set_State[1]
private

◆ m_set_State [7/12]

Uint4 CChiral_center_Base::m_set_State[1]
private

◆ m_set_State [8/12]

Uint4 CInter_residue_bond_Base::m_set_State[1]
private

◆ m_set_State [9/12]

Uint4 CIntra_residue_bond_Base::m_set_State[1]
private

◆ m_set_State [10/12]

Uint4 CMolecule_graph_Base::m_set_State[1]
private

◆ m_set_State [11/12]

Uint4 CResidue_Base::m_set_State[1]
private

◆ m_set_State [12/12]

Uint4 CResidue_graph_Base::m_set_State[1]
private

◆ m_Sid

CPCSubstance_id CMolecule_graph_Base::m_Sid
private

◆ m_Sign

ESign CChiral_center_Base::m_Sign
private

◆  [1/2]

NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string> { ... } ::m_string

Definition at line 452 of file Biomol_descr_.hpp.

◆ m_string [2/2]

NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string> CBiomol_descr_Base::m_string

◆ sm_SelectionNames [1/2]

const char *const CBiomol_descr_Base::sm_SelectionNames
staticprivate
Initial value:
= {
"not set",
"name",
"pdb-class",
"pdb-source",
"pdb-comment",
"other-comment",
"organism",
"attribution",
"assembly-type",
"molecule-type"
}

Definition at line 447 of file Biomol_descr_.hpp.

Referenced by CBiomol_descr_Base::SelectionName(), and CBiomol_descr_Base::ThrowInvalidSelection().

◆ sm_SelectionNames [2/2]

const char *const CResidue_graph_pntr_Base::sm_SelectionNames
staticprivate
Initial value:
= {
"not set",
"local",
"biostruc",
"standard"
}

Definition at line 250 of file Residue_graph_pntr_.hpp.

Referenced by CResidue_graph_pntr_Base::SelectionName(), and CResidue_graph_pntr_Base::ThrowInvalidSelection().

Modified on Fri Mar 29 09:54:55 2024 by modify_doxy.py rev. 669887