NCBI C++ ToolKit
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Definition at line 90 of file Blast4_simple_results_.hpp.
Definition at line 107 of file Blast4_queue_search_reques_.hpp.
Definition at line 97 of file Blast_get_reque_info_reply_.hpp.
Definition at line 95 of file Blas_get_searc_resul_reply_.hpp.
typedef list< CRef< CBlast4_simple_alignment > > CBlast4_alignments_for_query_Base::TAlignments |
Definition at line 92 of file Blast4_alignment_for_query_.hpp.
typedef list< CRef< CBlast4_alignments_for_query > > CBlast4_simple_results_Base::TAll_alignments |
Definition at line 91 of file Blast4_simple_results_.hpp.
typedef Int8 CBlast4_value_Base::TBig_integer |
Definition at line 183 of file Blast4_value_.hpp.
typedef list< Int8 > CBlast4_value_Base::TBig_integer_list |
Definition at line 195 of file Blast4_value_.hpp.
typedef CBioseq CBlast4_value_Base::TBioseq |
Definition at line 184 of file Blast4_value_.hpp.
typedef list< CRef< CBioseq > > CBlast4_value_Base::TBioseq_list |
Definition at line 196 of file Blast4_value_.hpp.
Definition at line 159 of file Blast4_queries_.hpp.
Definition at line 207 of file Blast4_value_.hpp.
typedef double CBlast4_simple_alignment_Base::TBit_score |
Definition at line 92 of file Blast4_simple_alignment_.hpp.
Definition at line 130 of file Blast4_reply_.hpp.
Definition at line 129 of file Blast4_request_.hpp.
typedef bool CBlast4_value_Base::TBoolean |
Definition at line 185 of file Blast4_value_.hpp.
typedef list< bool > CBlast4_value_Base::TBoolean_list |
Definition at line 197 of file Blast4_value_.hpp.
typedef int CBlast4_error_Base::TCode |
Definition at line 124 of file Blast4_error_.hpp.
Definition at line 95 of file Blast_get_reque_info_reply_.hpp.
Definition at line 186 of file Blast4_value_.hpp.
typedef list< CRef< CBlast4_cutoff > > CBlast4_value_Base::TCutoff_list |
Definition at line 198 of file Blast4_value_.hpp.
Definition at line 85 of file Blas_get_windo_taxid_reply_.hpp.
typedef list< CRef< CBlast4_database_info > > CBlast4_get_databases_ex_reply_Base::Tdata |
Definition at line 89 of file Blast4_get_databa_ex_reply_.hpp.
typedef list< CRef< CBlast4_database_info > > CBlast4_get_databases_reply_Base::Tdata |
Definition at line 89 of file Blast4_get_databases_reply_.hpp.
typedef list< CRef< CBlast4_matrix_id > > CBlast4_get_matrices_reply_Base::Tdata |
Definition at line 89 of file Blast4_get_matrices_reply_.hpp.
typedef list< CRef< CBlast4_parameter_info > > CBlast4_get_parameters_reply_Base::Tdata |
Definition at line 89 of file Blast4_get_parameter_reply_.hpp.
typedef list< CRef< CBlast4_task_info > > CBlast4_get_paramsets_reply_Base::Tdata |
Definition at line 92 of file Blast4_get_paramsets_reply_.hpp.
typedef list< CRef< CBlast4_program_info > > CBlast4_get_programs_reply_Base::Tdata |
Definition at line 89 of file Blast4_get_programs_reply_.hpp.
typedef list< CRef< CBlast4_seq_part_data > > CBlast4_get_seq_parts_reply_Base::Tdata |
Definition at line 89 of file Blast4_get_seq_parts_reply_.hpp.
typedef list< CRef< CBioseq > > CBlast4_get_sequences_reply_Base::Tdata |
Definition at line 89 of file Blast4_get_sequences_reply_.hpp.
typedef list< CRef< CBlast4_parameter > > CBlast4_parameters_Base::Tdata |
Definition at line 89 of file Blast4_parameters_.hpp.
Definition at line 89 of file Blast4_seq_part_data_.hpp.
Definition at line 91 of file Blast4_database_info_.hpp.
Definition at line 91 of file Blast4_get_sequenc_request_.hpp.
Definition at line 151 of file Blast4_subject_.hpp.
Definition at line 92 of file Blast_get_reque_info_reply_.hpp.
Definition at line 91 of file Blast_get_seq_parts_reques_.hpp.
Definition at line 92 of file Blast4_database_info_.hpp.
Definition at line 87 of file Blast4_task_info_.hpp.
typedef double CBlast4_cutoff_Base::TE_value |
Definition at line 179 of file Blast4_cutoff_.hpp.
typedef double CBlast4_simple_alignment_Base::TE_value |
Definition at line 91 of file Blast4_simple_alignment_.hpp.
typedef int CBlast4_range_Base::TEnd |
Definition at line 83 of file Blast4_range_.hpp.
typedef list< CRef< CBlast4_error > > CBlast4_reply_Base::TErrors |
Definition at line 129 of file Blast4_reply_.hpp.
Definition at line 98 of file Blast4_database_info_.hpp.
Definition at line 173 of file Blast4_reply_body_.hpp.
Definition at line 165 of file Blast4_request_body_.hpp.
Definition at line 109 of file Blast4_queue_search_reques_.hpp.
Definition at line 99 of file Blast_get_reque_info_reply_.hpp.
Definition at line 105 of file Blast4_mask_.hpp.
Definition at line 95 of file Blast4_simple_alignment_.hpp.
Definition at line 96 of file Blast4_simple_alignment_.hpp.
typedef bool CBlast4_ka_block_Base::TGapped |
Definition at line 84 of file Blast4_ka_block_.hpp.
Definition at line 174 of file Blast4_reply_body_.hpp.
Definition at line 188 of file Blast4_reply_body_.hpp.
Definition at line 173 of file Blast4_request_body_.hpp.
Definition at line 175 of file Blast4_reply_body_.hpp.
Definition at line 176 of file Blast4_reply_body_.hpp.
Definition at line 177 of file Blast4_reply_body_.hpp.
Definition at line 178 of file Blast4_reply_body_.hpp.
Definition at line 186 of file Blast4_reply_body_.hpp.
Definition at line 171 of file Blast4_request_body_.hpp.
Definition at line 182 of file Blast4_reply_body_.hpp.
Definition at line 183 of file Blast4_reply_body_.hpp.
Definition at line 169 of file Blast4_request_body_.hpp.
Definition at line 187 of file Blast4_reply_body_.hpp.
Definition at line 172 of file Blast4_request_body_.hpp.
Definition at line 179 of file Blast4_reply_body_.hpp.
Definition at line 166 of file Blast4_request_body_.hpp.
Definition at line 184 of file Blast4_reply_body_.hpp.
Definition at line 170 of file Blast4_request_body_.hpp.
Definition at line 180 of file Blast4_reply_body_.hpp.
Definition at line 167 of file Blast4_request_body_.hpp.
Definition at line 185 of file Blast4_reply_body_.hpp.
typedef double CBlast4_ka_block_Base::TH |
Definition at line 83 of file Blast4_ka_block_.hpp.
Definition at line 88 of file Blast4_seq_part_data_.hpp.
typedef string CBlast4_request_Base::TIdent |
Definition at line 128 of file Blast4_request_.hpp.
Definition at line 90 of file Blast_get_searc_info_reply_.hpp.
Definition at line 91 of file Blast_get_searc_info_reque_.hpp.
typedef int CBlast4_value_Base::TInteger |
Definition at line 187 of file Blast4_value_.hpp.
typedef list< int > CBlast4_value_Base::TInteger_list |
Definition at line 199 of file Blast4_value_.hpp.
typedef double CBlast4_ka_block_Base::TK |
Definition at line 82 of file Blast4_ka_block_.hpp.
typedef list< CRef< CBlast4_ka_block > > CBlast4_get_search_results_reply_Base::TKa_blocks |
Definition at line 98 of file Blas_get_searc_resul_reply_.hpp.
typedef double CBlast4_ka_block_Base::TLambda |
Definition at line 81 of file Blast4_ka_block_.hpp.
Definition at line 93 of file Blast4_database_info_.hpp.
typedef list< CRef< CSeq_loc > > CBlast4_mask_Base::TLocations |
Definition at line 104 of file Blast4_mask_.hpp.
typedef list< CRef< CBlast4_mask > > CBlast4_get_search_results_reply_Base::TMasks |
Definition at line 97 of file Blas_get_searc_resul_reply_.hpp.
Definition at line 188 of file Blast4_value_.hpp.
typedef list< CRef< CPssmWithParameters > > CBlast4_value_Base::TMatrix_list |
Definition at line 200 of file Blast4_value_.hpp.
Definition at line 114 of file Blas_get_searc_resul_reply_.hpp.
typedef Tparent::CMemberIndex<E_memberIndex, 3> CBlast4_get_search_results_request_Base::TmemberIndex |
Definition at line 94 of file Blas_get_searc_resul_reque_.hpp.
Definition at line 93 of file Blas_get_searc_statu_reply_.hpp.
typedef Tparent::CMemberIndex<E_memberIndex, 2> CBlast4_get_search_status_request_Base::TmemberIndex |
Definition at line 93 of file Blas_get_searc_statu_reque_.hpp.
typedef Tparent::CMemberIndex<E_memberIndex, 2> CBlast4_get_search_strategy_request_Base::TmemberIndex |
Definition at line 93 of file Blas_get_searc_strat_reque_.hpp.
Definition at line 100 of file Blast4_alignment_for_query_.hpp.
Definition at line 104 of file Blast4_archive_.hpp.
Definition at line 95 of file Blast4_database_.hpp.
Definition at line 112 of file Blast4_database_info_.hpp.
Definition at line 133 of file Blast4_error_.hpp.
Definition at line 92 of file Blast4_get_queries_reply_.hpp.
Definition at line 104 of file Blast4_get_sequenc_request_.hpp.
Definition at line 94 of file Blast4_ka_block_.hpp.
Definition at line 113 of file Blast4_mask_.hpp.
Definition at line 95 of file Blast4_matrix_id_.hpp.
Definition at line 98 of file Blast4_parameter_.hpp.
Definition at line 94 of file Blast4_parameter_info_.hpp.
Definition at line 98 of file Blast4_phi_alignments_.hpp.
Definition at line 95 of file Blast4_program_info_.hpp.
Definition at line 92 of file Blast4_queue_search_reply_.hpp.
Definition at line 123 of file Blast4_queue_search_reques_.hpp.
Definition at line 93 of file Blast4_range_.hpp.
Definition at line 138 of file Blast4_reply_.hpp.
Definition at line 137 of file Blast4_request_.hpp.
Definition at line 97 of file Blast4_seq_part_data_.hpp.
Definition at line 109 of file Blast4_simple_alignment_.hpp.
Definition at line 98 of file Blast4_simple_results_.hpp.
Definition at line 95 of file Blast4_task_info_.hpp.
Definition at line 103 of file Blast_finish_params_reques_.hpp.
Definition at line 92 of file Blast_get_databa_ex_reques_.hpp.
Definition at line 115 of file Blast_get_reque_info_reply_.hpp.
Definition at line 93 of file Blast_get_reque_info_reque_.hpp.
Definition at line 98 of file Blast_get_searc_info_reply_.hpp.
Definition at line 99 of file Blast_get_searc_info_reque_.hpp.
Definition at line 100 of file Blast_get_seq_parts_reques_.hpp.
typedef string CBlast4_error_Base::TMessage |
Definition at line 125 of file Blast4_error_.hpp.
typedef list< CRef< CBlast4_error > > CBlast4_archive_Base::TMessages |
Definition at line 95 of file Blast4_archive_.hpp.
typedef string CBlast4_database_Base::TName |
Definition at line 86 of file Blast4_database_.hpp.
typedef string CBlast4_matrix_id_Base::TName |
Definition at line 87 of file Blast4_matrix_id_.hpp.
typedef string CBlast4_parameter_Base::TName |
Definition at line 89 of file Blast4_parameter_.hpp.
Definition at line 85 of file Blast4_parameter_info_.hpp.
typedef string CBlast4_task_info_Base::TName |
Definition at line 86 of file Blast4_task_info_.hpp.
Definition at line 89 of file Blast4_phi_alignments_.hpp.
Definition at line 93 of file Blast4_simple_alignment_.hpp.
Definition at line 94 of file Blast4_simple_alignment_.hpp.
Definition at line 95 of file Blast4_database_info_.hpp.
Definition at line 93 of file Blast_finish_params_reques_.hpp.
Definition at line 85 of file Blast_get_databa_ex_reques_.hpp.
Definition at line 106 of file Blast4_queue_search_reques_.hpp.
Definition at line 92 of file Blast_finish_params_reques_.hpp.
Definition at line 67 of file Blas_get_searc_resul_reply.hpp.
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Definition at line 84 of file Blas_get_searc_resul_reply_.hpp.
Definition at line 67 of file Blas_get_searc_resul_reque.hpp.
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Definition at line 74 of file Blas_get_searc_resul_reque_.hpp.
Definition at line 67 of file Blas_get_searc_statu_reply.hpp.
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Definition at line 75 of file Blas_get_searc_statu_reply_.hpp.
Definition at line 67 of file Blas_get_searc_statu_reque.hpp.
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Definition at line 75 of file Blas_get_searc_statu_reque_.hpp.
Definition at line 67 of file Blas_get_searc_strat_reply.hpp.
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Definition at line 76 of file Blas_get_searc_strat_reply_.hpp.
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Definition at line 67 of file Blas_get_searc_strat_reque.hpp.
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Definition at line 75 of file Blas_get_searc_strat_reque_.hpp.
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Definition at line 67 of file Blas_get_windo_taxid_reply.hpp.
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Definition at line 74 of file Blas_get_windo_taxid_reply_.hpp.
Definition at line 67 of file Blast4_alignment_for_query.hpp.
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Definition at line 80 of file Blast4_alignment_for_query_.hpp.
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Definition at line 67 of file Blast4_archive.hpp.
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Definition at line 82 of file Blast4_archive_.hpp.
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Definition at line 67 of file Blast4_cutoff.hpp.
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Definition at line 109 of file Blast4_cutoff_.hpp.
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Definition at line 75 of file Blast4_database_.hpp.
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Definition at line 67 of file Blast4_database_info.hpp.
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Definition at line 80 of file Blast4_database_info_.hpp.
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Definition at line 67 of file Blast4_error.hpp.
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Definition at line 113 of file Blast4_error_.hpp.
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Definition at line 67 of file Blast4_finish_params_reply.hpp.
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Definition at line 74 of file Blast4_finish_params_reply_.hpp.
Definition at line 67 of file Blast4_get_databa_ex_reply.hpp.
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Definition at line 78 of file Blast4_get_databa_ex_reply_.hpp.
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Definition at line 67 of file Blast4_get_databases_reply.hpp.
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Definition at line 78 of file Blast4_get_databases_reply_.hpp.
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Definition at line 67 of file Blast4_get_matrices_reply.hpp.
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Definition at line 78 of file Blast4_get_matrices_reply_.hpp.
Definition at line 67 of file Blast4_get_parameter_reply.hpp.
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Definition at line 78 of file Blast4_get_parameter_reply_.hpp.
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Definition at line 67 of file Blast4_get_paramsets_reply.hpp.
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Definition at line 81 of file Blast4_get_paramsets_reply_.hpp.
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Definition at line 67 of file Blast4_get_programs_reply.hpp.
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Definition at line 78 of file Blast4_get_programs_reply_.hpp.
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Definition at line 67 of file Blast4_get_queries_reply.hpp.
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Definition at line 74 of file Blast4_get_queries_reply_.hpp.
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Definition at line 67 of file Blast4_get_seq_parts_reply.hpp.
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Definition at line 78 of file Blast4_get_seq_parts_reply_.hpp.
Definition at line 67 of file Blast4_get_sequenc_request.hpp.
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Definition at line 80 of file Blast4_get_sequenc_request_.hpp.
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Definition at line 67 of file Blast4_get_sequences_reply.hpp.
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Definition at line 78 of file Blast4_get_sequences_reply_.hpp.
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Definition at line 67 of file Blast4_ka_block.hpp.
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Definition at line 70 of file Blast4_ka_block_.hpp.
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Definition at line 67 of file Blast4_mask.hpp.
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Definition at line 93 of file Blast4_mask_.hpp.
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Definition at line 67 of file Blast4_matrix_id.hpp.
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Definition at line 75 of file Blast4_matrix_id_.hpp.
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Definition at line 67 of file Blast4_parameter.hpp.
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Definition at line 78 of file Blast4_parameter_.hpp.
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Definition at line 67 of file Blast4_parameter_info.hpp.
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Definition at line 74 of file Blast4_parameter_info_.hpp.
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Definition at line 78 of file Blast4_parameters_.hpp.
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Definition at line 67 of file Blast4_phi_alignments.hpp.
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Definition at line 78 of file Blast4_phi_alignments_.hpp.
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Definition at line 67 of file Blast4_program_info.hpp.
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Definition at line 75 of file Blast4_program_info_.hpp.
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Definition at line 86 of file Blast4_queries_.hpp.
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Definition at line 67 of file Blast4_queue_search_reply.hpp.
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Definition at line 74 of file Blast4_queue_search_reply_.hpp.
Definition at line 67 of file Blast4_queue_search_reques.hpp.
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Definition at line 91 of file Blast4_queue_search_reques_.hpp.
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Definition at line 71 of file Blast4_range_.hpp.
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Definition at line 67 of file Blast4_reply.hpp.
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Definition at line 118 of file Blast4_reply_.hpp.
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Definition at line 67 of file Blast4_reply_body.hpp.
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Definition at line 89 of file Blast4_reply_body_.hpp.
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Definition at line 67 of file Blast4_request.hpp.
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Definition at line 117 of file Blast4_request_.hpp.
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Definition at line 67 of file Blast4_request_body.hpp.
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Definition at line 82 of file Blast4_request_body_.hpp.
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Definition at line 67 of file Blast4_seq_part_data.hpp.
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Definition at line 77 of file Blast4_seq_part_data_.hpp.
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Definition at line 67 of file Blast4_simple_alignment.hpp.
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Definition at line 79 of file Blast4_simple_alignment_.hpp.
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Definition at line 67 of file Blast4_simple_results.hpp.
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Definition at line 79 of file Blast4_simple_results_.hpp.
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Definition at line 67 of file Blast4_subject.hpp.
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Definition at line 80 of file Blast4_subject_.hpp.
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Definition at line 67 of file Blast4_task_info.hpp.
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Definition at line 75 of file Blast4_task_info_.hpp.
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Definition at line 67 of file Blast4_value.hpp.
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Definition at line 88 of file Blast4_value_.hpp.
Definition at line 67 of file Blast_finish_params_reques.hpp.
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Definition at line 79 of file Blast_finish_params_reques_.hpp.
Definition at line 67 of file Blast_get_databa_ex_reques.hpp.
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Definition at line 74 of file Blast_get_databa_ex_reques_.hpp.
Definition at line 67 of file Blast_get_proto_info_reply.hpp.
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Definition at line 74 of file Blast_get_proto_info_reply_.hpp.
Definition at line 67 of file Blast_get_proto_info_reque.hpp.
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Definition at line 75 of file Blast_get_proto_info_reque_.hpp.
Definition at line 67 of file Blast_get_reque_info_reply.hpp.
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Definition at line 81 of file Blast_get_reque_info_reply_.hpp.
Definition at line 67 of file Blast_get_reque_info_reque.hpp.
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Definition at line 75 of file Blast_get_reque_info_reque_.hpp.
Definition at line 67 of file Blast_get_searc_info_reply.hpp.
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Definition at line 78 of file Blast_get_searc_info_reply_.hpp.
Definition at line 67 of file Blast_get_searc_info_reque.hpp.
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Definition at line 79 of file Blast_get_searc_info_reque_.hpp.
Definition at line 67 of file Blast_get_seq_parts_reques.hpp.
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Definition at line 80 of file Blast_get_seq_parts_reques_.hpp.
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Definition at line 67 of file blastclient.hpp.
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Definition at line 78 of file blastclient_.hpp.
Definition at line 96 of file Blas_get_searc_resul_reply_.hpp.
Definition at line 86 of file Blast4_program_info_.hpp.
Definition at line 102 of file Blast4_queue_search_reques_.hpp.
Definition at line 90 of file Blast_finish_params_reques_.hpp.
Definition at line 93 of file Blast_get_reque_info_reply_.hpp.
Definition at line 108 of file Blast4_queue_search_reques_.hpp.
Definition at line 98 of file Blast_get_reque_info_reply_.hpp.
Definition at line 100 of file Blas_get_searc_resul_reply_.hpp.
Definition at line 157 of file Blast4_queries_.hpp.
Definition at line 85 of file Blast4_get_queries_reply_.hpp.
Definition at line 104 of file Blast4_queue_search_reques_.hpp.
Definition at line 96 of file Blast_get_reque_info_reply_.hpp.
Definition at line 91 of file Blast4_alignment_for_query_.hpp.
Definition at line 209 of file Blast4_value_.hpp.
Definition at line 181 of file Blast4_reply_body_.hpp.
Definition at line 168 of file Blast4_request_body_.hpp.
typedef int CBlast4_cutoff_Base::TRaw_score |
Definition at line 180 of file Blast4_cutoff_.hpp.
typedef double CBlast4_value_Base::TReal |
Definition at line 189 of file Blast4_value_.hpp.
typedef list< double > CBlast4_value_Base::TReal_list |
Definition at line 201 of file Blast4_value_.hpp.
Definition at line 86 of file blastclient_.hpp.
Definition at line 88 of file blastclient_.hpp.
Definition at line 93 of file Blast4_archive_.hpp.
Definition at line 85 of file blastclient_.hpp.
Definition at line 85 of file Blas_get_searc_resul_reque_.hpp.
Definition at line 86 of file Blas_get_searc_statu_reque_.hpp.
Definition at line 86 of file Blas_get_searc_strat_reque_.hpp.
Definition at line 85 of file Blast4_queue_search_reply_.hpp.
Definition at line 86 of file Blast_get_reque_info_reque_.hpp.
Definition at line 89 of file Blast_get_searc_info_reply_.hpp.
Definition at line 90 of file Blast_get_searc_info_reque_.hpp.
Definition at line 87 of file blastclient_.hpp.
Definition at line 86 of file Blast4_matrix_id_.hpp.
Definition at line 86 of file Blas_get_searc_resul_reque_.hpp.
Definition at line 94 of file Blast4_archive_.hpp.
typedef list< string > CBlast4_get_search_results_reply_Base::TSearch_stats |
Definition at line 99 of file Blas_get_searc_resul_reply_.hpp.
Definition at line 190 of file Blast4_value_.hpp.
typedef list< CRef< CSeq_align > > CBlast4_value_Base::TSeq_align_list |
Definition at line 202 of file Blast4_value_.hpp.
Definition at line 208 of file Blast4_value_.hpp.
typedef CSeq_id CBlast4_value_Base::TSeq_id |
Definition at line 191 of file Blast4_value_.hpp.
typedef list< CRef< CSeq_id > > CBlast4_value_Base::TSeq_id_list |
Definition at line 203 of file Blast4_value_.hpp.
typedef list< CRef< CSeq_id > > CBlast4_get_sequences_request_Base::TSeq_ids |
Definition at line 92 of file Blast4_get_sequenc_request_.hpp.
typedef CSeq_loc CBlast4_value_Base::TSeq_loc |
Definition at line 192 of file Blast4_value_.hpp.
typedef list< CRef< CSeq_loc > > CBlast4_queries_Base::TSeq_loc_list |
Definition at line 158 of file Blast4_queries_.hpp.
typedef list< CRef< CSeq_loc > > CBlast4_subject_Base::TSeq_loc_list |
Definition at line 153 of file Blast4_subject_.hpp.
typedef list< CRef< CSeq_loc > > CBlast4_value_Base::TSeq_loc_list |
Definition at line 204 of file Blast4_value_.hpp.
typedef list< CRef< CSeq_interval > > CBlast4_get_seq_parts_request_Base::TSeq_locations |
Definition at line 92 of file Blast_get_seq_parts_reques_.hpp.
typedef list< CRef< CSeq_loc > > CBlast4_phi_alignments_Base::TSeq_locs |
Definition at line 90 of file Blast4_phi_alignments_.hpp.
Definition at line 96 of file Blast4_database_info_.hpp.
typedef list< CRef< CBioseq > > CBlast4_subject_Base::TSequences |
Definition at line 152 of file Blast4_subject_.hpp.
Definition at line 103 of file Blast4_queue_search_reques_.hpp.
Definition at line 91 of file Blast_finish_params_reques_.hpp.
Definition at line 94 of file Blast_get_reque_info_reply_.hpp.
typedef list< string > CBlast4_program_info_Base::TServices |
Definition at line 87 of file Blast4_program_info_.hpp.
Definition at line 101 of file Blas_get_searc_resul_reply_.hpp.
Definition at line 93 of file Blast4_get_sequenc_request_.hpp.
typedef int CBlast4_range_Base::TStart |
Definition at line 82 of file Blast4_range_.hpp.
Definition at line 86 of file Blas_get_searc_statu_reply_.hpp.
typedef int CBlast4_range_Base::TStrand |
Definition at line 84 of file Blast4_range_.hpp.
Definition at line 193 of file Blast4_value_.hpp.
typedef list< EBlast4_strand_type > CBlast4_value_Base::TStrand_type_list |
Definition at line 205 of file Blast4_value_.hpp.
typedef string CBlast4_value_Base::TString |
Definition at line 194 of file Blast4_value_.hpp.
typedef list< string > CBlast4_value_Base::TString_list |
Definition at line 206 of file Blast4_value_.hpp.
Definition at line 105 of file Blast4_queue_search_reques_.hpp.
Definition at line 90 of file Blast4_simple_alignment_.hpp.
Definition at line 100 of file Blast_get_reque_info_reply_.hpp.
Definition at line 94 of file Blast4_get_sequenc_request_.hpp.
Definition at line 97 of file Blast4_database_info_.hpp.
Definition at line 94 of file Blast4_database_info_.hpp.
Definition at line 87 of file Blast4_database_.hpp.
Definition at line 86 of file Blast4_parameter_info_.hpp.
Definition at line 90 of file Blast4_parameter_.hpp.
Choice variants.
Enumerator | |
---|---|
e_not_set | No variant selected. |
e_E_value | |
e_Raw_score |
Definition at line 121 of file Blast4_cutoff_.hpp.
Choice variants.
Enumerator | |
---|---|
e_not_set | No variant selected. |
e_Pssm | |
e_Seq_loc_list | |
e_Bioseq_set |
Definition at line 98 of file Blast4_queries_.hpp.
Choice variants.
Definition at line 101 of file Blast4_reply_body_.hpp.
Choice variants.
Definition at line 94 of file Blast4_request_body_.hpp.
Choice variants.
Enumerator | |
---|---|
e_not_set | No variant selected. |
e_Database | |
e_Sequences | |
e_Seq_loc_list |
Definition at line 92 of file Blast4_subject_.hpp.
Choice variants.
Definition at line 100 of file Blast4_value_.hpp.
Maximum+1 value of the choice variant enumerator.
Enumerator | |
---|---|
e_MaxChoice | == e_Raw_score+1 |
Definition at line 127 of file Blast4_cutoff_.hpp.
Maximum+1 value of the choice variant enumerator.
Enumerator | |
---|---|
e_MaxChoice | == e_Bioseq_set+1 |
Definition at line 105 of file Blast4_queries_.hpp.
Maximum+1 value of the choice variant enumerator.
Enumerator | |
---|---|
e_MaxChoice | == e_Get_databases_ex+1 |
Definition at line 121 of file Blast4_reply_body_.hpp.
Maximum+1 value of the choice variant enumerator.
Enumerator | |
---|---|
e_MaxChoice | == e_Get_databases_ex+1 |
Definition at line 113 of file Blast4_request_body_.hpp.
Maximum+1 value of the choice variant enumerator.
Enumerator | |
---|---|
e_MaxChoice | == e_Seq_loc_list+1 |
Definition at line 99 of file Blast4_subject_.hpp.
Maximum+1 value of the choice variant enumerator.
Enumerator | |
---|---|
e_MaxChoice | == e_Query_mask+1 |
Definition at line 131 of file Blast4_value_.hpp.
Enumerator | |
---|---|
e__allMandatory | |
e_alignments | |
e_phi_alignments | |
e_masks | |
e_ka_blocks | |
e_search_stats | |
e_pssm | |
e_simple_results |
Definition at line 104 of file Blas_get_searc_resul_reply_.hpp.
Enumerator | |
---|---|
e__allMandatory | |
e_request_id | |
e_result_types |
Definition at line 89 of file Blas_get_searc_resul_reque_.hpp.
Enumerator | |
---|---|
e__allMandatory | |
e_status |
Definition at line 89 of file Blas_get_searc_statu_reply_.hpp.
Enumerator | |
---|---|
e__allMandatory | |
e_request_id |
Definition at line 89 of file Blas_get_searc_statu_reque_.hpp.
Enumerator | |
---|---|
e__allMandatory | |
e_request_id |
Definition at line 89 of file Blas_get_searc_strat_reque_.hpp.
|
strong |
Enumerator | |
---|---|
e__allMandatory | |
e_query_id | |
e_alignments |
Definition at line 95 of file Blast4_alignment_for_query_.hpp.
|
strong |
Enumerator | |
---|---|
e__allMandatory | |
e_request | |
e_results | |
e_messages |
Definition at line 98 of file Blast4_archive_.hpp.
|
strong |
Enumerator | |
---|---|
e__allMandatory | |
e_name | |
e_type |
Definition at line 90 of file Blast4_database_.hpp.
|
strong |
Enumerator | |
---|---|
e__allMandatory | |
e_database | |
e_description | |
e_last_updated | |
e_total_length | |
e_num_sequences | |
e_seqtech | |
e_taxid | |
e_extended |
Definition at line 101 of file Blast4_database_info_.hpp.
|
strong |
Enumerator | |
---|---|
e__allMandatory | |
e_code | |
e_message |
Definition at line 128 of file Blast4_error_.hpp.
|
strong |
Enumerator | |
---|---|
e__allMandatory | |
e_queries |
Definition at line 88 of file Blast4_get_queries_reply_.hpp.
Enumerator | |
---|---|
e__allMandatory | |
e_database | |
e_seq_ids | |
e_skip_seq_data | |
e_target_only |
Definition at line 97 of file Blast4_get_sequenc_request_.hpp.
|
strong |
Enumerator | |
---|---|
e__allMandatory | |
e_lambda | |
e_k | |
e_h | |
e_gapped |
Definition at line 87 of file Blast4_ka_block_.hpp.
|
strong |
Enumerator | |
---|---|
e__allMandatory | |
e_locations | |
e_frame |
Definition at line 108 of file Blast4_mask_.hpp.
|
strong |
Enumerator | |
---|---|
e__allMandatory | |
e_residue_type | |
e_name |
Definition at line 90 of file Blast4_matrix_id_.hpp.
|
strong |
Enumerator | |
---|---|
e__allMandatory | |
e_name | |
e_value |
Definition at line 93 of file Blast4_parameter_.hpp.
|
strong |
Enumerator | |
---|---|
e__allMandatory | |
e_name | |
e_type |
Definition at line 89 of file Blast4_parameter_info_.hpp.
|
strong |
Enumerator | |
---|---|
e__allMandatory | |
e_num_alignments | |
e_seq_locs |
Definition at line 93 of file Blast4_phi_alignments_.hpp.
|
strong |
Enumerator | |
---|---|
e__allMandatory | |
e_program | |
e_services |
Definition at line 90 of file Blast4_program_info_.hpp.
|
strong |
Enumerator | |
---|---|
e__allMandatory | |
e_request_id |
Definition at line 88 of file Blast4_queue_search_reply_.hpp.
|
strong |
Enumerator | |
---|---|
e__allMandatory | |
e_program | |
e_service | |
e_queries | |
e_subject | |
e_paramset | |
e_algorithm_options | |
e_program_options | |
e_format_options |
Definition at line 112 of file Blast4_queue_search_reques_.hpp.
|
strong |
Enumerator | |
---|---|
e__allMandatory | |
e_start | |
e_end | |
e_strand |
Definition at line 87 of file Blast4_range_.hpp.
|
strong |
Enumerator | |
---|---|
e__allMandatory | |
e_errors | |
e_body |
Definition at line 133 of file Blast4_reply_.hpp.
|
strong |
Enumerator | |
---|---|
e__allMandatory | |
e_ident | |
e_body |
Definition at line 132 of file Blast4_request_.hpp.
|
strong |
Enumerator | |
---|---|
e__allMandatory | |
e_id | |
e_data |
Definition at line 92 of file Blast4_seq_part_data_.hpp.
|
strong |
Enumerator | |
---|---|
e__allMandatory | |
e_subject_id | |
e_e_value | |
e_bit_score | |
e_num_identities | |
e_num_indels | |
e_full_query_range | |
e_full_subject_range |
Definition at line 99 of file Blast4_simple_alignment_.hpp.
|
strong |
Enumerator | |
---|---|
e__allMandatory | |
e_all_alignments |
Definition at line 94 of file Blast4_simple_results_.hpp.
|
strong |
Enumerator | |
---|---|
e__allMandatory | |
e_name | |
e_documentation |
Definition at line 90 of file Blast4_task_info_.hpp.
Enumerator | |
---|---|
e__allMandatory | |
e_program | |
e_service | |
e_paramset | |
e_params |
Definition at line 96 of file Blast_finish_params_reques_.hpp.
Enumerator | |
---|---|
e__allMandatory | |
e_params |
Definition at line 88 of file Blast_get_databa_ex_reques_.hpp.
Enumerator | |
---|---|
e__allMandatory | |
e_database | |
e_program | |
e_service | |
e_created_by | |
e_queries | |
e_algorithm_options | |
e_program_options | |
e_format_options | |
e_subjects |
Definition at line 103 of file Blast_get_reque_info_reply_.hpp.
Enumerator | |
---|---|
e__allMandatory | |
e_request_id |
Definition at line 89 of file Blast_get_reque_info_reque_.hpp.
Enumerator | |
---|---|
e__allMandatory | |
e_request_id | |
e_info |
Definition at line 93 of file Blast_get_searc_info_reply_.hpp.
Enumerator | |
---|---|
e__allMandatory | |
e_request_id | |
e_info |
Definition at line 94 of file Blast_get_searc_info_reque_.hpp.
Enumerator | |
---|---|
e__allMandatory | |
e_database | |
e_seq_locations |
Definition at line 95 of file Blast_get_seq_parts_reques_.hpp.
enum EBlast4_error_code |
Defines values for use in Blast4-errorcode.
Access to EBlast4_error_code's attributes (values, names) as defined in spec.
Note: warnings should have values greater than 1024 and less than 2048, errors should have values greater than 2048.
Definition at line 66 of file Blast4_error_code_.hpp.
enum EBlast4_error_flags |
This enumeration defines values that are intended to be used with the Blast4-errorcode in a logical AND operation to easily determine whether a given Blast4-error object contains either a warning or an error.
Access to EBlast4_error_flags's attributes (values, names) as defined in spec.
Enumerator | |
---|---|
eBlast4_error_flags_warning | |
eBlast4_error_flags_error |
Definition at line 66 of file Blast4_error_flags_.hpp.
enum EBlast4_frame_type |
Access to EBlast4_frame_type's attributes (values, names) as defined in spec.
Enumerator | |
---|---|
eBlast4_frame_type_notset | |
eBlast4_frame_type_plus1 | |
eBlast4_frame_type_plus2 | |
eBlast4_frame_type_plus3 | |
eBlast4_frame_type_minus1 | |
eBlast4_frame_type_minus2 | |
eBlast4_frame_type_minus3 |
Definition at line 63 of file Blast4_frame_type_.hpp.
enum EBlast4_residue_type |
Access to EBlast4_residue_type's attributes (values, names) as defined in spec.
Enumerator | |
---|---|
eBlast4_residue_type_unknown | |
eBlast4_residue_type_protein | |
eBlast4_residue_type_nucleotide |
Definition at line 63 of file Blast4_residue_type_.hpp.
enum EBlast4_result_types |
This type allows the specification of what result types are desired.
Access to EBlast4_result_types's attributes (values, names) as defined in spec.
Definition at line 64 of file Blast4_result_types_.hpp.
enum EBlast4_seqtech |
Borrowed from seq.asn.
Access to EBlast4_seqtech's attributes (values, names) as defined in spec.
Enumerator | |
---|---|
eBlast4_seqtech_unknown | |
eBlast4_seqtech_standard | standard sequencing |
eBlast4_seqtech_est | Expressed Sequence Tag. |
eBlast4_seqtech_sts | Sequence Tagged Site. |
eBlast4_seqtech_survey | one-pass genomic sequence |
eBlast4_seqtech_genemap | from genetic mapping techniques |
eBlast4_seqtech_physmap | from physical mapping techniques |
eBlast4_seqtech_derived | derived from other data, not a primary entity |
eBlast4_seqtech_concept_trans | conceptual translation |
eBlast4_seqtech_seq_pept | peptide was sequenced |
eBlast4_seqtech_both | concept transl. w/ partial pept. seq. |
eBlast4_seqtech_seq_pept_overlap | sequenced peptide, ordered by overlap |
eBlast4_seqtech_seq_pept_homol | sequenced peptide, ordered by homology |
eBlast4_seqtech_concept_trans_a | conceptual transl. supplied by author |
eBlast4_seqtech_htgs_1 | unordered High Throughput sequence contig |
eBlast4_seqtech_htgs_2 | ordered High Throughput sequence contig |
eBlast4_seqtech_htgs_3 | finished High Throughput sequence |
eBlast4_seqtech_fli_cdna | full length insert cDNA |
eBlast4_seqtech_htgs_0 | single genomic reads for coordination |
eBlast4_seqtech_htc | high throughput cDNA |
eBlast4_seqtech_wgs | whole genome shotgun sequencing |
eBlast4_seqtech_other | use Source.techexp |
Definition at line 64 of file Blast4_seqtech_.hpp.
enum EBlast4_strand_type |
Access to EBlast4_strand_type's attributes (values, names) as defined in spec.
Enumerator | |
---|---|
eBlast4_strand_type_forward_strand | |
eBlast4_strand_type_reverse_strand | |
eBlast4_strand_type_both_strands |
Definition at line 63 of file Blast4_strand_type_.hpp.
|
inlinevirtual |
Reimplemented from CRPCClient< CBlast4_request, CBlast4_reply >.
Definition at line 171 of file blastclient_.hpp.
References CRPCClient< CBlast4_request, CBlast4_reply >::Ask().
Referenced by CBlast4Client_Base::Ask(), CBlast4Client_Base::AskFinish_params(), CBlast4Client_Base::AskGet_databases(), CBlast4Client_Base::AskGet_databases_ex(), CBlast4Client_Base::AskGet_matrices(), CBlast4Client_Base::AskGet_parameters(), CBlast4Client_Base::AskGet_paramsets(), CBlast4Client_Base::AskGet_programs(), CBlast4Client_Base::AskGet_protocol_info(), CBlast4Client_Base::AskGet_request_info(), CBlast4Client_Base::AskGet_search_info(), CBlast4Client_Base::AskGet_search_results(), CBlast4Client_Base::AskGet_sequence_parts(), CBlast4Client_Base::AskGet_sequences(), CBlast4Client_Base::AskGet_windowmasked_taxids(), CBlast4Client_Base::AskQueue_search(), CBlastServices::GetDatabaseInfo(), CBlastServices::GetSequenceParts(), s_GetSequences(), CRemoteBlast::x_GetRequestInfoFromRID(), CRemoteBlast::x_GetSubjects(), and CRemoteBlast::x_SendRequest().
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virtual |
Definition at line 83 of file blastclient_.cpp.
References CBlast4Client_Base::Ask(), CBlast4_reply_body_Base::ThrowInvalidSelection(), CBlast4_reply_body_Base::Which(), and CBlast4Client_Base::x_Choice().
|
virtual |
Definition at line 65 of file blastclient_.cpp.
References CBlast4Client_Base::Ask(), CSerialObject::Assign(), CBlast4Client_Base::m_DefaultRequest, and CBlast4_request_Base::SetBody().
|
virtual |
Definition at line 74 of file blastclient_.cpp.
References CBlast4Client_Base::Ask(), CSerialObject::Assign(), CBlast4Client_Base::m_DefaultRequest, and CBlast4_request_Base::SetBody().
|
virtual |
Definition at line 94 of file blastclient_.cpp.
References CBlast4Client_Base::Ask(), CBlast4_reply_body_Base::e_Finish_params, CBlast4_reply_body_Base::SetFinish_params(), CBlast4_request_body_Base::SetFinish_params(), and CBlast4Client_Base::x_Choice().
|
virtual |
Definition at line 106 of file blastclient_.cpp.
References CBlast4Client_Base::Ask(), CBlast4_reply_body_Base::e_Get_databases, CBlast4_reply_body_Base::SetGet_databases(), CBlast4_request_body_Base::SetGet_databases(), and CBlast4Client_Base::x_Choice().
|
virtual |
Definition at line 262 of file blastclient_.cpp.
References CBlast4Client_Base::Ask(), CBlast4_reply_body_Base::e_Get_databases_ex, CBlast4_reply_body_Base::SetGet_databases_ex(), CBlast4_request_body_Base::SetGet_databases_ex(), and CBlast4Client_Base::x_Choice().
|
virtual |
Definition at line 118 of file blastclient_.cpp.
References CBlast4Client_Base::Ask(), CBlast4_reply_body_Base::e_Get_matrices, CBlast4_reply_body_Base::SetGet_matrices(), CBlast4_request_body_Base::SetGet_matrices(), and CBlast4Client_Base::x_Choice().
|
virtual |
Definition at line 130 of file blastclient_.cpp.
References CBlast4Client_Base::Ask(), CBlast4_reply_body_Base::e_Get_parameters, CBlast4_reply_body_Base::SetGet_parameters(), CBlast4_request_body_Base::SetGet_parameters(), and CBlast4Client_Base::x_Choice().
|
virtual |
Definition at line 142 of file blastclient_.cpp.
References CBlast4Client_Base::Ask(), CBlast4_reply_body_Base::e_Get_paramsets, CBlast4_reply_body_Base::SetGet_paramsets(), CBlast4_request_body_Base::SetGet_paramsets(), and CBlast4Client_Base::x_Choice().
|
virtual |
Definition at line 154 of file blastclient_.cpp.
References CBlast4Client_Base::Ask(), CBlast4_reply_body_Base::e_Get_programs, CBlast4_reply_body_Base::SetGet_programs(), CBlast4_request_body_Base::SetGet_programs(), and CBlast4Client_Base::x_Choice().
|
virtual |
Definition at line 238 of file blastclient_.cpp.
References CBlast4Client_Base::Ask(), CBlast4_reply_body_Base::e_Get_protocol_info, CBlast4_reply_body_Base::SetGet_protocol_info(), CBlast4_request_body_Base::SetGet_protocol_info(), and CBlast4Client_Base::x_Choice().
|
virtual |
Definition at line 202 of file blastclient_.cpp.
References CBlast4Client_Base::Ask(), CBlast4_reply_body_Base::e_Get_request_info, CBlast4_reply_body_Base::SetGet_request_info(), CBlast4_request_body_Base::SetGet_request_info(), and CBlast4Client_Base::x_Choice().
|
virtual |
Definition at line 250 of file blastclient_.cpp.
References CBlast4Client_Base::Ask(), CBlast4_reply_body_Base::e_Get_search_info, CBlast4_reply_body_Base::SetGet_search_info(), CBlast4_request_body_Base::SetGet_search_info(), and CBlast4Client_Base::x_Choice().
|
virtual |
|
virtual |
|
virtual |
Definition at line 178 of file blastclient_.cpp.
References CBlast4Client_Base::Ask(), CBlast4_reply_body_Base::e_Get_sequences, CBlast4_reply_body_Base::SetGet_sequences(), CBlast4_request_body_Base::SetGet_sequences(), and CBlast4Client_Base::x_Choice().
|
virtual |
|
virtual |
Definition at line 190 of file blastclient_.cpp.
References CBlast4Client_Base::Ask(), CBlast4_reply_body_Base::e_Queue_search, CBlast4_reply_body_Base::SetQueue_search(), CBlast4_request_body_Base::SetQueue_search(), and CBlast4Client_Base::x_Choice().
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inline |
Check if it is safe to call Get method.
Definition at line 154 of file Blas_get_windo_taxid_reply_.hpp.
|
inline |
Check if it is safe to call Get method.
Definition at line 158 of file Blast4_get_databa_ex_reply_.hpp.
|
inline |
Check if it is safe to call Get method.
Definition at line 158 of file Blast4_get_databases_reply_.hpp.
|
inline |
Check if it is safe to call Get method.
Definition at line 158 of file Blast4_get_matrices_reply_.hpp.
|
inline |
Check if it is safe to call Get method.
Definition at line 158 of file Blast4_get_parameter_reply_.hpp.
|
inline |
Check if it is safe to call Get method.
Definition at line 161 of file Blast4_get_paramsets_reply_.hpp.
|
inline |
Check if it is safe to call Get method.
Definition at line 158 of file Blast4_get_programs_reply_.hpp.
|
inline |
Check if it is safe to call Get method.
Definition at line 158 of file Blast4_get_seq_parts_reply_.hpp.
|
inline |
Check if it is safe to call Get method.
Definition at line 158 of file Blast4_get_sequences_reply_.hpp.
|
inline |
Check if it is safe to call Get method.
Definition at line 158 of file Blast4_parameters_.hpp.
|
inline |
Check if it is safe to call GetAlgorithm_options method.
Definition at line 666 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::IsSetAlgorithm_options().
Referenced by BOOST_AUTO_TEST_CASE(), CImportStrategy::FetchData(), CImportStrategy::GetAlgoOptions(), and CBlast4_queue_search_request_Base::GetAlgorithm_options().
|
inline |
Check if it is safe to call GetAlgorithm_options method.
Definition at line 695 of file Blast_get_reque_info_reply_.hpp.
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inline |
Check if it is safe to call GetAlignments method.
Definition at line 398 of file Blas_get_searc_resul_reply_.hpp.
References CBlast4_get_search_results_reply_Base::IsSetAlignments().
Referenced by BOOST_AUTO_TEST_CASE(), and CBlast4_get_search_results_reply_Base::GetAlignments().
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inline |
Check if it is safe to call GetAlignments method.
Definition at line 255 of file Blast4_alignment_for_query_.hpp.
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inline |
Check if it is safe to call GetAll_alignments method.
Definition at line 164 of file Blast4_simple_results_.hpp.
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inline |
Check if it is safe to call GetBit_score method.
Definition at line 512 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::IsSetBit_score().
Referenced by CBlast4_simple_alignment_Base::GetBit_score().
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inline |
Check if it is safe to call GetBody method.
Definition at line 267 of file Blast4_reply_.hpp.
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inline |
Check if it is safe to call GetBody method.
Definition at line 298 of file Blast4_request_.hpp.
Referenced by s_BuildArchiveAll().
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inline |
Check if it is safe to call GetCode method.
Definition at line 246 of file Blast4_error_.hpp.
References CBlast4_error_Base::IsSetCode().
Referenced by CBlast4_error_Base::GetCode().
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inline |
Check if it is safe to call GetCreated_by method.
Definition at line 618 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::IsSetCreated_by().
Referenced by CBlast4_get_request_info_reply_Base::GetCreated_by().
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inline |
Check if it is safe to call GetData method.
Definition at line 239 of file Blast4_seq_part_data_.hpp.
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inline |
Check if it is safe to call GetDatabase method.
Definition at line 452 of file Blast4_database_info_.hpp.
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inline |
Check if it is safe to call GetDatabase method.
Definition at line 294 of file Blast4_get_sequenc_request_.hpp.
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inline |
Check if it is safe to call GetDatabase method.
Definition at line 494 of file Blast_get_reque_info_reply_.hpp.
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inline |
Check if it is safe to call GetDatabase method.
Definition at line 210 of file Blast_get_seq_parts_reques_.hpp.
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inline |
Check if it is safe to call GetDescription method.
Definition at line 482 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::IsSetDescription().
Referenced by CBlast4_database_info_Base::GetDescription().
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inline |
Check if it is safe to call GetDocumentation method.
Definition at line 256 of file Blast4_task_info_.hpp.
References CBlast4_task_info_Base::IsSetDocumentation().
Referenced by CBlast4_task_info_Base::GetDocumentation().
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inline |
Check if it is safe to call GetE_value method.
Definition at line 465 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::IsSetE_value().
Referenced by CBlast4_simple_alignment_Base::GetE_value().
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inline |
Check if it is safe to call GetEnd method.
Definition at line 290 of file Blast4_range_.hpp.
References CBlast4_range_Base::IsSetEnd().
Referenced by CBlast4_range_Base::GetEnd().
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inline |
Check if it is safe to call GetErrors method.
Definition at line 242 of file Blast4_reply_.hpp.
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inline |
Check if it is safe to call GetExtended method.
Definition at line 764 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::IsSetExtended().
Referenced by CBlast4_database_info_Base::GetExtended().
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inline |
Check if it is safe to call GetFormat_options method.
Definition at line 708 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::IsSetFormat_options().
Referenced by CImportStrategy::FetchData(), CBlast4_queue_search_request_Base::GetFormat_options(), and CImportStrategy::GetWebFormatOptions().
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inline |
Check if it is safe to call GetFormat_options method.
Definition at line 755 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::IsSetFormat_options().
Referenced by CBlast4_get_request_info_reply_Base::GetFormat_options().
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inline |
Check if it is safe to call GetFrame method.
Definition at line 242 of file Blast4_mask_.hpp.
References CBlast4_mask_Base::IsSetFrame().
Referenced by CBlast4_mask_Base::GetFrame().
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inline |
Check if it is safe to call GetFull_query_range method.
Definition at line 653 of file Blast4_simple_alignment_.hpp.
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inline |
Check if it is safe to call GetFull_subject_range method.
Definition at line 683 of file Blast4_simple_alignment_.hpp.
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inline |
Check if it is safe to call GetGapped method.
Definition at line 421 of file Blast4_ka_block_.hpp.
References CBlast4_ka_block_Base::IsSetGapped().
Referenced by CBlast4_ka_block_Base::GetGapped().
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Check if it is safe to call GetH method.
Definition at line 374 of file Blast4_ka_block_.hpp.
References CBlast4_ka_block_Base::IsSetH().
Referenced by CBlast4_ka_block_Base::GetH().
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Check if it is safe to call GetId method.
Definition at line 209 of file Blast4_seq_part_data_.hpp.
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Check if it is safe to call GetIdent method.
Definition at line 251 of file Blast4_request_.hpp.
References CBlast4_request_Base::IsSetIdent().
Referenced by CBlast4_request_Base::GetIdent().
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Check if it is safe to call GetInfo method.
Definition at line 256 of file Blast_get_searc_info_reply_.hpp.
References CBlast4_get_search_info_reply_Base::IsSetInfo().
Referenced by CBlast4_get_search_info_reply_Base::GetInfo(), CRemoteBlast::x_GetStringFromSearchInfoReply(), and CRemoteBlast::x_GetSubjects().
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Check if it is safe to call GetInfo method.
Definition at line 257 of file Blast_get_searc_info_reque_.hpp.
References CBlast4_get_search_info_request_Base::IsSetInfo().
Referenced by CBlast4_get_search_info_request_Base::GetInfo().
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Check if it is safe to call GetK method.
Definition at line 327 of file Blast4_ka_block_.hpp.
References CBlast4_ka_block_Base::IsSetK().
Referenced by CBlast4_ka_block_Base::GetK().
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inline |
Check if it is safe to call GetKa_blocks method.
Definition at line 465 of file Blas_get_searc_resul_reply_.hpp.
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Check if it is safe to call GetLambda method.
Definition at line 280 of file Blast4_ka_block_.hpp.
References CBlast4_ka_block_Base::IsSetLambda().
Referenced by CBlast4_ka_block_Base::GetLambda().
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Check if it is safe to call GetLast_updated method.
Definition at line 529 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::IsSetLast_updated().
Referenced by CBlast4_database_info_Base::GetLast_updated().
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Check if it is safe to call GetLocations method.
Definition at line 217 of file Blast4_mask_.hpp.
|
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Check if it is safe to call GetMasks method.
Definition at line 440 of file Blas_get_searc_resul_reply_.hpp.
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Check if it is safe to call GetMessage method.
Definition at line 293 of file Blast4_error_.hpp.
References CBlast4_error_Base::IsSetMessage().
Referenced by CBlast4_error_Base::GetMessage().
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Check if it is safe to call GetMessages method.
Definition at line 308 of file Blast4_archive_.hpp.
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Check if it is safe to call GetName method.
Definition at line 206 of file Blast4_database_.hpp.
References CBlast4_database_Base::IsSetName().
Referenced by CBlast4_database_Base::GetName().
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Check if it is safe to call GetName method.
Definition at line 253 of file Blast4_matrix_id_.hpp.
References CBlast4_matrix_id_Base::IsSetName().
Referenced by CBlast4_matrix_id_Base::GetName().
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Check if it is safe to call GetName method.
Definition at line 209 of file Blast4_parameter_.hpp.
References CBlast4_parameter_Base::IsSetName().
Referenced by CBlast4_parameter_Base::GetName(), and CBlast4Field::Match().
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Check if it is safe to call GetName method.
Definition at line 206 of file Blast4_parameter_info_.hpp.
References CBlast4_parameter_info_Base::IsSetName().
Referenced by CBlast4_parameter_info_Base::GetName().
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Check if it is safe to call GetName method.
Definition at line 209 of file Blast4_task_info_.hpp.
References CBlast4_task_info_Base::IsSetName().
Referenced by CBlast4_task_info_Base::GetName().
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Check if it is safe to call GetNum_alignments method.
Definition at line 202 of file Blast4_phi_alignments_.hpp.
References CBlast4_phi_alignments_Base::IsSetNum_alignments().
Referenced by CBlast4_phi_alignments_Base::GetNum_alignments().
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Check if it is safe to call GetNum_identities method.
Definition at line 559 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::IsSetNum_identities().
Referenced by CBlast4_simple_alignment_Base::GetNum_identities().
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Check if it is safe to call GetNum_indels method.
Definition at line 606 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::IsSetNum_indels().
Referenced by CBlast4_simple_alignment_Base::GetNum_indels().
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Check if it is safe to call GetNum_sequences method.
Definition at line 623 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::IsSetNum_sequences().
Referenced by CBlast4_database_info_Base::GetNum_sequences().
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Check if it is safe to call GetParams method.
Definition at line 433 of file Blast_finish_params_reques_.hpp.
References CBlast4_finish_params_request_Base::IsSetParams().
Referenced by CBlast4_finish_params_request_Base::GetParams().
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Check if it is safe to call GetParams method.
Definition at line 164 of file Blast_get_databa_ex_reques_.hpp.
References CBlast4_get_databases_ex_request_Base::IsSetParams().
Referenced by CBlast4_get_databases_ex_request_Base::GetParams().
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Check if it is safe to call GetParamset method.
Definition at line 619 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::IsSetParamset().
Referenced by CBlast4_queue_search_request_Base::GetParamset().
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Check if it is safe to call GetParamset method.
Definition at line 386 of file Blast_finish_params_reques_.hpp.
References CBlast4_finish_params_request_Base::IsSetParamset().
Referenced by CBlast4_finish_params_request_Base::GetParamset().
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Check if it is safe to call GetPhi_alignments method.
Definition at line 419 of file Blas_get_searc_resul_reply_.hpp.
References CBlast4_get_search_results_reply_Base::IsSetPhi_alignments().
Referenced by CBlast4_get_search_results_reply_Base::GetPhi_alignments().
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Check if it is safe to call GetProgram method.
Definition at line 200 of file Blast4_program_info_.hpp.
References CBlast4_program_info_Base::IsSetProgram().
Referenced by CBlast4_program_info_Base::GetProgram().
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Check if it is safe to call GetProgram method.
Definition at line 465 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::IsSetProgram().
Referenced by CBlast4_queue_search_request_Base::GetProgram().
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Check if it is safe to call GetProgram method.
Definition at line 292 of file Blast_finish_params_reques_.hpp.
References CBlast4_finish_params_request_Base::IsSetProgram().
Referenced by CBlast4_finish_params_request_Base::GetProgram().
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Check if it is safe to call GetProgram method.
Definition at line 524 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::IsSetProgram().
Referenced by CBlast4_get_request_info_reply_Base::GetProgram().
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Check if it is safe to call GetProgram_options method.
Definition at line 687 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::IsSetProgram_options().
Referenced by BOOST_AUTO_TEST_CASE(), CImportStrategy::FetchData(), CBlast4_queue_search_request_Base::GetProgram_options(), and CImportStrategy::GetProgramOptions().
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Check if it is safe to call GetProgram_options method.
Definition at line 725 of file Blast_get_reque_info_reply_.hpp.
|
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Check if it is safe to call GetPssm method.
Definition at line 515 of file Blas_get_searc_resul_reply_.hpp.
References CBlast4_get_search_results_reply_Base::IsSetPssm().
Referenced by CBlast4_get_search_results_reply_Base::GetPssm().
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Check if it is safe to call GetQueries method.
Definition at line 164 of file Blast4_get_queries_reply_.hpp.
|
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Check if it is safe to call GetQueries method.
Definition at line 559 of file Blast4_queue_search_reques_.hpp.
Referenced by BOOST_AUTO_TEST_CASE().
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Check if it is safe to call GetQueries method.
Definition at line 665 of file Blast_get_reque_info_reply_.hpp.
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Check if it is safe to call GetQuery_id method.
Definition at line 208 of file Blast4_alignment_for_query_.hpp.
References CBlast4_alignments_for_query_Base::IsSetQuery_id().
Referenced by CBlast4_alignments_for_query_Base::GetQuery_id().
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Check if it is safe to call GetRequest method.
Definition at line 248 of file Blast4_archive_.hpp.
|
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Check if it is safe to call GetRequest_id method.
Definition at line 207 of file Blas_get_searc_resul_reque_.hpp.
References CBlast4_get_search_results_request_Base::IsSetRequest_id().
Referenced by CBlast4_get_search_results_request_Base::GetRequest_id().
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Check if it is safe to call GetRequest_id method.
Definition at line 166 of file Blas_get_searc_statu_reque_.hpp.
References CBlast4_get_search_status_request_Base::IsSetRequest_id().
Referenced by CBlast4_get_search_status_request_Base::GetRequest_id().
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Check if it is safe to call GetRequest_id method.
Definition at line 166 of file Blas_get_searc_strat_reque_.hpp.
References CBlast4_get_search_strategy_request_Base::IsSetRequest_id().
Referenced by CBlast4_get_search_strategy_request_Base::GetRequest_id().
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Check if it is safe to call GetRequest_id method.
Definition at line 165 of file Blast4_queue_search_reply_.hpp.
References CBlast4_queue_search_reply_Base::IsSetRequest_id().
Referenced by CBlast4_queue_search_reply_Base::GetRequest_id().
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Check if it is safe to call GetRequest_id method.
Definition at line 166 of file Blast_get_reque_info_reque_.hpp.
References CBlast4_get_request_info_request_Base::IsSetRequest_id().
Referenced by CBlast4_get_request_info_request_Base::GetRequest_id().
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Check if it is safe to call GetRequest_id method.
Definition at line 209 of file Blast_get_searc_info_reply_.hpp.
References CBlast4_get_search_info_reply_Base::IsSetRequest_id().
Referenced by CBlast4_get_search_info_reply_Base::GetRequest_id(), CRemoteBlast::x_GetStringFromSearchInfoReply(), and CRemoteBlast::x_GetSubjects().
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Check if it is safe to call GetRequest_id method.
Definition at line 210 of file Blast_get_searc_info_reque_.hpp.
References CBlast4_get_search_info_request_Base::IsSetRequest_id().
Referenced by CBlast4_get_search_info_request_Base::GetRequest_id().
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Check if it is safe to call GetResidue_type method.
Definition at line 206 of file Blast4_matrix_id_.hpp.
References CBlast4_matrix_id_Base::IsSetResidue_type().
Referenced by CBlast4_matrix_id_Base::GetResidue_type().
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Check if it is safe to call GetResult_types method.
Definition at line 254 of file Blas_get_searc_resul_reque_.hpp.
References CBlast4_get_search_results_request_Base::IsSetResult_types().
Referenced by CBlast4_get_search_results_request_Base::GetResult_types().
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Check if it is safe to call GetResults method.
Definition at line 278 of file Blast4_archive_.hpp.
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inline |
Check if it is safe to call GetSearch_stats method.
Definition at line 490 of file Blas_get_searc_resul_reply_.hpp.
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Check if it is safe to call GetSeq_ids method.
Definition at line 324 of file Blast4_get_sequenc_request_.hpp.
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inline |
Check if it is safe to call GetSeq_locations method.
Definition at line 240 of file Blast_get_seq_parts_reques_.hpp.
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inline |
Check if it is safe to call GetSeq_locs method.
Definition at line 249 of file Blast4_phi_alignments_.hpp.
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Check if it is safe to call GetSeqtech method.
Definition at line 670 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::IsSetSeqtech().
Referenced by CBlast4_database_info_Base::GetSeqtech().
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Check if it is safe to call GetService method.
Definition at line 512 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::IsSetService().
Referenced by CBlast4_queue_search_request_Base::GetService().
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Check if it is safe to call GetService method.
Definition at line 339 of file Blast_finish_params_reques_.hpp.
References CBlast4_finish_params_request_Base::IsSetService().
Referenced by CBlast4_finish_params_request_Base::GetService().
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Check if it is safe to call GetService method.
Definition at line 571 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::IsSetService().
Referenced by CBlast4_get_request_info_reply_Base::GetService().
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Check if it is safe to call GetServices method.
Definition at line 247 of file Blast4_program_info_.hpp.
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Check if it is safe to call GetSimple_results method.
Definition at line 536 of file Blas_get_searc_resul_reply_.hpp.
References CBlast4_get_search_results_reply_Base::IsSetSimple_results().
Referenced by CBlast4_get_search_results_reply_Base::GetSimple_results().
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Check if it is safe to call GetSkip_seq_data method.
Definition at line 349 of file Blast4_get_sequenc_request_.hpp.
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Check if it is safe to call GetStart method.
Definition at line 243 of file Blast4_range_.hpp.
References CBlast4_range_Base::IsSetStart().
Referenced by CBlast4_range_Base::GetStart().
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Check if it is safe to call GetStatus method.
Definition at line 166 of file Blas_get_searc_statu_reply_.hpp.
References CBlast4_get_search_status_reply_Base::IsSetStatus().
Referenced by CBlast4_get_search_status_reply_Base::GetStatus().
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Check if it is safe to call GetStrand method.
Definition at line 337 of file Blast4_range_.hpp.
References CBlast4_range_Base::IsSetStrand().
Referenced by CBlast4_range_Base::GetStrand().
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Check if it is safe to call GetSubject method.
Definition at line 589 of file Blast4_queue_search_reques_.hpp.
Referenced by BOOST_AUTO_TEST_CASE().
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Check if it is safe to call GetSubject_id method.
Definition at line 418 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::IsSetSubject_id().
Referenced by CBlast4_simple_alignment_Base::GetSubject_id().
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Check if it is safe to call GetSubjects method.
Definition at line 776 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::IsSetSubjects().
Referenced by CBlast4_get_request_info_reply_Base::GetSubjects().
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inline |
Check if it is safe to call GetTarget_only method.
Definition at line 399 of file Blast4_get_sequenc_request_.hpp.
References CBlast4_get_sequences_request_Base::IsSetTarget_only().
Referenced by CBlast4_get_sequences_request_Base::GetTarget_only().
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Check if it is safe to call GetTaxid method.
Definition at line 717 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::IsSetTaxid().
Referenced by CBlast4_database_info_Base::GetTaxid().
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Check if it is safe to call GetTotal_length method.
Definition at line 576 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::IsSetTotal_length().
Referenced by CBlast4_database_info_Base::GetTotal_length().
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Check if it is safe to call GetType method.
Definition at line 253 of file Blast4_database_.hpp.
References CBlast4_database_Base::IsSetType().
Referenced by CBlast4_database_Base::GetType().
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inline |
Check if it is safe to call GetType method.
Definition at line 253 of file Blast4_parameter_info_.hpp.
References CBlast4_parameter_info_Base::IsSetType().
Referenced by CBlast4_parameter_info_Base::GetType().
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Check if it is safe to call GetValue method.
Definition at line 256 of file Blast4_parameter_.hpp.
Referenced by CBlast4Field::Match().
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|
inline |
Definition at line 86 of file Blast4_alignment_for_query.hpp.
|
private |
END_CLASS_INFO CBlast4_alignments_for_query_Base::CBlast4_alignments_for_query_Base | ( | void | ) |
Definition at line 81 of file Blast4_alignment_for_query_.cpp.
References CBlast4_alignments_for_query_Base::m_set_State.
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|
inline |
Definition at line 86 of file Blast4_archive.hpp.
|
private |
END_CLASS_INFO CBlast4_archive_Base::CBlast4_archive_Base | ( | void | ) |
Definition at line 107 of file Blast4_archive_.cpp.
References CObject::IsAllocatedInPool(), CBlast4_archive_Base::m_set_State, CBlast4_archive_Base::ResetRequest(), and CBlast4_archive_Base::ResetResults().
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|
inline |
Definition at line 86 of file Blast4_cutoff.hpp.
|
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END_CHOICE_INFO CBlast4_cutoff_Base::CBlast4_cutoff_Base | ( | void | ) |
Definition at line 106 of file Blast4_cutoff_.cpp.
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private |
END_CLASS_INFO CBlast4_database_Base::CBlast4_database_Base | ( | void | ) |
Definition at line 74 of file Blast4_database_.cpp.
References CBlast4_database_Base::m_set_State.
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|
inline |
Definition at line 86 of file Blast4_database_info.hpp.
|
private |
END_CLASS_INFO CBlast4_database_info_Base::CBlast4_database_info_Base | ( | void | ) |
Definition at line 125 of file Blast4_database_info_.cpp.
References CObject::IsAllocatedInPool(), CBlast4_database_info_Base::m_set_State, and CBlast4_database_info_Base::ResetDatabase().
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inline |
Definition at line 86 of file Blast4_error.hpp.
|
private |
END_CLASS_INFO CBlast4_error_Base::CBlast4_error_Base | ( | void | ) |
Definition at line 74 of file Blast4_error_.cpp.
References CBlast4_error_Base::m_set_State.
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inline |
Definition at line 69 of file Blast4_finish_params_reply.hpp.
|
inline |
Definition at line 96 of file Blast4_finish_params_reply_.hpp.
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private |
|
inline |
Definition at line 86 of file Blast_finish_params_reques.hpp.
|
private |
END_CLASS_INFO CBlast4_finish_params_request_Base::CBlast4_finish_params_request_Base | ( | void | ) |
Definition at line 108 of file Blast_finish_params_reques_.cpp.
References CBlast4_finish_params_request_Base::m_set_State.
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|
inline |
Definition at line 86 of file Blast4_get_databa_ex_reply.hpp.
|
private |
END_CLASS_INFO CBlast4_get_databases_ex_reply_Base::CBlast4_get_databases_ex_reply_Base | ( | void | ) |
Definition at line 68 of file Blast4_get_databa_ex_reply_.cpp.
References CBlast4_get_databases_ex_reply_Base::m_set_State.
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private |
|
inline |
Definition at line 86 of file Blast_get_databa_ex_reques.hpp.
|
private |
END_CLASS_INFO CBlast4_get_databases_ex_request_Base::CBlast4_get_databases_ex_request_Base | ( | void | ) |
Definition at line 84 of file Blast_get_databa_ex_reques_.cpp.
References CBlast4_get_databases_ex_request_Base::m_set_State.
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|
inline |
Definition at line 86 of file Blast4_get_databases_reply.hpp.
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private |
END_CLASS_INFO CBlast4_get_databases_reply_Base::CBlast4_get_databases_reply_Base | ( | void | ) |
Definition at line 68 of file Blast4_get_databases_reply_.cpp.
References CBlast4_get_databases_reply_Base::m_set_State.
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|
inline |
Definition at line 86 of file Blast4_get_matrices_reply.hpp.
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private |
END_CLASS_INFO CBlast4_get_matrices_reply_Base::CBlast4_get_matrices_reply_Base | ( | void | ) |
Definition at line 68 of file Blast4_get_matrices_reply_.cpp.
References CBlast4_get_matrices_reply_Base::m_set_State.
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|
inline |
Definition at line 86 of file Blast4_get_parameter_reply.hpp.
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private |
END_CLASS_INFO CBlast4_get_parameters_reply_Base::CBlast4_get_parameters_reply_Base | ( | void | ) |
Definition at line 68 of file Blast4_get_parameter_reply_.cpp.
References CBlast4_get_parameters_reply_Base::m_set_State.
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|
inline |
Definition at line 86 of file Blast4_get_paramsets_reply.hpp.
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private |
END_CLASS_INFO CBlast4_get_paramsets_reply_Base::CBlast4_get_paramsets_reply_Base | ( | void | ) |
Definition at line 68 of file Blast4_get_paramsets_reply_.cpp.
References CBlast4_get_paramsets_reply_Base::m_set_State.
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|
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Definition at line 86 of file Blast4_get_programs_reply.hpp.
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private |
END_CLASS_INFO CBlast4_get_programs_reply_Base::CBlast4_get_programs_reply_Base | ( | void | ) |
Definition at line 68 of file Blast4_get_programs_reply_.cpp.
References CBlast4_get_programs_reply_Base::m_set_State.
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Definition at line 69 of file Blast_get_proto_info_reply.hpp.
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Definition at line 96 of file Blast_get_proto_info_reply_.hpp.
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Definition at line 69 of file Blast_get_proto_info_reque.hpp.
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inline |
Definition at line 97 of file Blast_get_proto_info_reque_.hpp.
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|
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Definition at line 86 of file Blast4_get_queries_reply.hpp.
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private |
END_CLASS_INFO CBlast4_get_queries_reply_Base::CBlast4_get_queries_reply_Base | ( | void | ) |
Definition at line 81 of file Blast4_get_queries_reply_.cpp.
References CObject::IsAllocatedInPool(), CBlast4_get_queries_reply_Base::m_set_State, and CBlast4_get_queries_reply_Base::ResetQueries().
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Definition at line 86 of file Blast_get_reque_info_reply.hpp.
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private |
END_CLASS_INFO CBlast4_get_request_info_reply_Base::CBlast4_get_request_info_reply_Base | ( | void | ) |
Definition at line 194 of file Blast_get_reque_info_reply_.cpp.
References CObject::IsAllocatedInPool(), CBlast4_get_request_info_reply_Base::m_set_State, CBlast4_get_request_info_reply_Base::ResetAlgorithm_options(), CBlast4_get_request_info_reply_Base::ResetDatabase(), CBlast4_get_request_info_reply_Base::ResetProgram_options(), and CBlast4_get_request_info_reply_Base::ResetQueries().
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|
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Definition at line 86 of file Blast_get_reque_info_reque.hpp.
|
private |
END_CLASS_INFO CBlast4_get_request_info_request_Base::CBlast4_get_request_info_request_Base | ( | void | ) |
Definition at line 72 of file Blast_get_reque_info_reque_.cpp.
References CBlast4_get_request_info_request_Base::m_set_State.
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Definition at line 86 of file Blast_get_searc_info_reply.hpp.
|
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END_CLASS_INFO CBlast4_get_search_info_reply_Base::CBlast4_get_search_info_reply_Base | ( | void | ) |
Definition at line 92 of file Blast_get_searc_info_reply_.cpp.
References CBlast4_get_search_info_reply_Base::m_set_State.
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|
inline |
Definition at line 86 of file Blast_get_searc_info_reque.hpp.
|
private |
END_CLASS_INFO CBlast4_get_search_info_request_Base::CBlast4_get_search_info_request_Base | ( | void | ) |
Definition at line 92 of file Blast_get_searc_info_reque_.cpp.
References CBlast4_get_search_info_request_Base::m_set_State.
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|
inline |
Definition at line 86 of file Blas_get_searc_resul_reply.hpp.
|
private |
END_CLASS_INFO CBlast4_get_search_results_reply_Base::CBlast4_get_search_results_reply_Base | ( | void | ) |
Definition at line 170 of file Blas_get_searc_resul_reply_.cpp.
References CBlast4_get_search_results_reply_Base::m_set_State.
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private |
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Definition at line 86 of file Blas_get_searc_resul_reque.hpp.
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END_CLASS_INFO CBlast4_get_search_results_request_Base::CBlast4_get_search_results_request_Base | ( | void | ) |
Definition at line 74 of file Blas_get_searc_resul_reque_.cpp.
References CBlast4_get_search_results_request_Base::m_set_State.
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Definition at line 86 of file Blas_get_searc_statu_reply.hpp.
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END_CLASS_INFO CBlast4_get_search_status_reply_Base::CBlast4_get_search_status_reply_Base | ( | void | ) |
Definition at line 72 of file Blas_get_searc_statu_reply_.cpp.
References CBlast4_get_search_status_reply_Base::m_set_State.
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Definition at line 86 of file Blas_get_searc_statu_reque.hpp.
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END_CLASS_INFO CBlast4_get_search_status_request_Base::CBlast4_get_search_status_request_Base | ( | void | ) |
Definition at line 72 of file Blas_get_searc_statu_reque_.cpp.
References CBlast4_get_search_status_request_Base::m_set_State.
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Definition at line 69 of file Blas_get_searc_strat_reply.hpp.
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Definition at line 98 of file Blas_get_searc_strat_reply_.hpp.
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Definition at line 86 of file Blas_get_searc_strat_reque.hpp.
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END_CLASS_INFO CBlast4_get_search_strategy_request_Base::CBlast4_get_search_strategy_request_Base | ( | void | ) |
Definition at line 72 of file Blas_get_searc_strat_reque_.cpp.
References CBlast4_get_search_strategy_request_Base::m_set_State.
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Definition at line 86 of file Blast4_get_seq_parts_reply.hpp.
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END_CLASS_INFO CBlast4_get_seq_parts_reply_Base::CBlast4_get_seq_parts_reply_Base | ( | void | ) |
Definition at line 68 of file Blast4_get_seq_parts_reply_.cpp.
References CBlast4_get_seq_parts_reply_Base::m_set_State.
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Definition at line 86 of file Blast_get_seq_parts_reques.hpp.
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END_CLASS_INFO CBlast4_get_seq_parts_request_Base::CBlast4_get_seq_parts_request_Base | ( | void | ) |
Definition at line 90 of file Blast_get_seq_parts_reques_.cpp.
References CObject::IsAllocatedInPool(), CBlast4_get_seq_parts_request_Base::m_set_State, and CBlast4_get_seq_parts_request_Base::ResetDatabase().
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Definition at line 86 of file Blast4_get_sequences_reply.hpp.
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END_CLASS_INFO CBlast4_get_sequences_reply_Base::CBlast4_get_sequences_reply_Base | ( | void | ) |
Definition at line 68 of file Blast4_get_sequences_reply_.cpp.
References CBlast4_get_sequences_reply_Base::m_set_State.
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Definition at line 86 of file Blast4_get_sequenc_request.hpp.
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END_CLASS_INFO CBlast4_get_sequences_request_Base::CBlast4_get_sequences_request_Base | ( | void | ) |
Definition at line 94 of file Blast4_get_sequenc_request_.cpp.
References CObject::IsAllocatedInPool(), CBlast4_get_sequences_request_Base::m_set_State, and CBlast4_get_sequences_request_Base::ResetDatabase().
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Definition at line 86 of file Blas_get_windo_taxid_reply.hpp.
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END_CLASS_INFO CBlast4_get_windowmasked_taxids_reply_Base::CBlast4_get_windowmasked_taxids_reply_Base | ( | void | ) |
Definition at line 67 of file Blas_get_windo_taxid_reply_.cpp.
References CBlast4_get_windowmasked_taxids_reply_Base::m_set_State.
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Definition at line 86 of file Blast4_ka_block.hpp.
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END_CLASS_INFO CBlast4_ka_block_Base::CBlast4_ka_block_Base | ( | void | ) |
Definition at line 72 of file Blast4_ka_block_.cpp.
References CBlast4_ka_block_Base::m_set_State.
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Definition at line 86 of file Blast4_mask.hpp.
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END_CLASS_INFO CBlast4_mask_Base::CBlast4_mask_Base | ( | void | ) |
Definition at line 75 of file Blast4_mask_.cpp.
References CBlast4_mask_Base::m_set_State.
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Definition at line 86 of file Blast4_matrix_id.hpp.
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END_CLASS_INFO CBlast4_matrix_id_Base::CBlast4_matrix_id_Base | ( | void | ) |
Definition at line 74 of file Blast4_matrix_id_.cpp.
References CBlast4_matrix_id_Base::m_set_State.
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Definition at line 86 of file Blast4_parameter.hpp.
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END_CLASS_INFO CBlast4_parameter_Base::CBlast4_parameter_Base | ( | void | ) |
Definition at line 89 of file Blast4_parameter_.cpp.
References CObject::IsAllocatedInPool(), CBlast4_parameter_Base::m_set_State, and CBlast4_parameter_Base::ResetValue().
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Definition at line 86 of file Blast4_parameter_info.hpp.
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END_CLASS_INFO CBlast4_parameter_info_Base::CBlast4_parameter_info_Base | ( | void | ) |
Definition at line 80 of file Blast4_parameter_info_.cpp.
References CBlast4_parameter_info_Base::m_set_State.
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END_CLASS_INFO CBlast4_parameters_Base::CBlast4_parameters_Base | ( | void | ) |
Definition at line 68 of file Blast4_parameters_.cpp.
References CBlast4_parameters_Base::m_set_State.
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Definition at line 86 of file Blast4_phi_alignments.hpp.
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END_CLASS_INFO CBlast4_phi_alignments_Base::CBlast4_phi_alignments_Base | ( | void | ) |
Definition at line 75 of file Blast4_phi_alignments_.cpp.
References CBlast4_phi_alignments_Base::m_set_State.
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Definition at line 86 of file Blast4_program_info.hpp.
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END_CLASS_INFO CBlast4_program_info_Base::CBlast4_program_info_Base | ( | void | ) |
Definition at line 80 of file Blast4_program_info_.cpp.
References CBlast4_program_info_Base::m_set_State.
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END_CHOICE_INFO CBlast4_queries_Base::CBlast4_queries_Base | ( | void | ) |
Definition at line 169 of file Blast4_queries_.cpp.
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Definition at line 86 of file Blast4_queue_search_reply.hpp.
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END_CLASS_INFO CBlast4_queue_search_reply_Base::CBlast4_queue_search_reply_Base | ( | void | ) |
Definition at line 72 of file Blast4_queue_search_reply_.cpp.
References CBlast4_queue_search_reply_Base::m_set_State.
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Definition at line 86 of file Blast4_queue_search_reques.hpp.
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END_CLASS_INFO CBlast4_queue_search_request_Base::CBlast4_queue_search_request_Base | ( | void | ) |
Definition at line 180 of file Blast4_queue_search_reques_.cpp.
References CObject::IsAllocatedInPool(), CBlast4_queue_search_request_Base::m_set_State, CBlast4_queue_search_request_Base::ResetQueries(), and CBlast4_queue_search_request_Base::ResetSubject().
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END_CLASS_INFO CBlast4_range_Base::CBlast4_range_Base | ( | void | ) |
Definition at line 70 of file Blast4_range_.cpp.
References CBlast4_range_Base::m_set_State.
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Definition at line 86 of file Blast4_reply.hpp.
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END_CLASS_INFO CBlast4_reply_Base::CBlast4_reply_Base | ( | void | ) |
Definition at line 90 of file Blast4_reply_.cpp.
References CObject::IsAllocatedInPool(), CBlast4_reply_Base::m_set_State, and CBlast4_reply_Base::ResetBody().
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Definition at line 86 of file Blast4_reply_body.hpp.
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END_CHOICE_INFO CBlast4_reply_body_Base::CBlast4_reply_body_Base | ( | void | ) |
Definition at line 566 of file Blast4_reply_body_.cpp.
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Definition at line 86 of file Blast4_request.hpp.
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END_CLASS_INFO CBlast4_request_Base::CBlast4_request_Base | ( | void | ) |
Definition at line 89 of file Blast4_request_.cpp.
References CObject::IsAllocatedInPool(), CBlast4_request_Base::m_set_State, and CBlast4_request_Base::ResetBody().
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Definition at line 86 of file Blast4_request_body.hpp.
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END_CHOICE_INFO CBlast4_request_body_Base::CBlast4_request_body_Base | ( | void | ) |
Definition at line 375 of file Blast4_request_body_.cpp.
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Definition at line 86 of file Blast4_seq_part_data.hpp.
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END_CLASS_INFO CBlast4_seq_part_data_Base::CBlast4_seq_part_data_Base | ( | void | ) |
Definition at line 98 of file Blast4_seq_part_data_.cpp.
References CObject::IsAllocatedInPool(), CBlast4_seq_part_data_Base::m_set_State, CBlast4_seq_part_data_Base::ResetData(), and CBlast4_seq_part_data_Base::ResetId().
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Definition at line 86 of file Blast4_simple_alignment.hpp.
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END_CLASS_INFO CBlast4_simple_alignment_Base::CBlast4_simple_alignment_Base | ( | void | ) |
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Definition at line 86 of file Blast4_simple_results.hpp.
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END_CLASS_INFO CBlast4_simple_results_Base::CBlast4_simple_results_Base | ( | void | ) |
Definition at line 73 of file Blast4_simple_results_.cpp.
References CBlast4_simple_results_Base::m_set_State.
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Definition at line 86 of file Blast4_subject.hpp.
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END_CHOICE_INFO CBlast4_subject_Base::CBlast4_subject_Base | ( | void | ) |
Definition at line 132 of file Blast4_subject_.cpp.
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Definition at line 86 of file Blast4_task_info.hpp.
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END_CLASS_INFO CBlast4_task_info_Base::CBlast4_task_info_Base | ( | void | ) |
Definition at line 80 of file Blast4_task_info_.cpp.
References CBlast4_task_info_Base::m_set_State.
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Definition at line 86 of file Blast4_value.hpp.
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END_CHOICE_INFO CBlast4_value_Base::CBlast4_value_Base | ( | void | ) |
Definition at line 498 of file Blast4_value_.cpp.
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Definition at line 86 of file blastclient.hpp.
CBlast4Client_Base::CBlast4Client_Base | ( | void | ) |
Definition at line 275 of file blastclient_.cpp.
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Verify selection, throw exception if it differs from the expected.
index | Expected selection. |
Definition at line 273 of file Blast4_cutoff_.hpp.
References CBlast4_cutoff_Base::m_choice, and CBlast4_cutoff_Base::ThrowInvalidSelection().
Referenced by CBlast4_cutoff_Base::GetE_value(), and CBlast4_cutoff_Base::GetRaw_score().
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Verify selection, throw exception if it differs from the expected.
index | Expected selection. |
Definition at line 271 of file Blast4_queries_.hpp.
References CBlast4_queries_Base::m_choice, and CBlast4_queries_Base::ThrowInvalidSelection().
Referenced by CBlast4_queries_Base::GetBioseq_set(), CBlast4_queries_Base::GetPssm(), and CBlast4_queries_Base::GetSeq_loc_list().
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Verify selection, throw exception if it differs from the expected.
index | Expected selection. |
Definition at line 640 of file Blast4_reply_body_.hpp.
References CBlast4_reply_body_Base::m_choice, and CBlast4_reply_body_Base::ThrowInvalidSelection().
Referenced by CBlast4_reply_body_Base::GetFinish_params(), CBlast4_reply_body_Base::GetGet_databases(), CBlast4_reply_body_Base::GetGet_databases_ex(), CBlast4_reply_body_Base::GetGet_matrices(), CBlast4_reply_body_Base::GetGet_parameters(), CBlast4_reply_body_Base::GetGet_paramsets(), CBlast4_reply_body_Base::GetGet_programs(), CBlast4_reply_body_Base::GetGet_protocol_info(), CBlast4_reply_body_Base::GetGet_queries(), CBlast4_reply_body_Base::GetGet_request_info(), CBlast4_reply_body_Base::GetGet_search_info(), CBlast4_reply_body_Base::GetGet_search_results(), CBlast4_reply_body_Base::GetGet_sequence_parts(), CBlast4_reply_body_Base::GetGet_sequences(), CBlast4_reply_body_Base::GetGet_windowmasked_taxids(), and CBlast4_reply_body_Base::GetQueue_search().
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Verify selection, throw exception if it differs from the expected.
index | Expected selection. |
Definition at line 511 of file Blast4_request_body_.hpp.
References CBlast4_request_body_Base::m_choice, and CBlast4_request_body_Base::ThrowInvalidSelection().
Referenced by CBlast4_request_body_Base::GetFinish_params(), CBlast4_request_body_Base::GetGet_databases_ex(), CBlast4_request_body_Base::GetGet_protocol_info(), CBlast4_request_body_Base::GetGet_request_info(), CBlast4_request_body_Base::GetGet_search_info(), CBlast4_request_body_Base::GetGet_search_results(), CBlast4_request_body_Base::GetGet_sequence_parts(), CBlast4_request_body_Base::GetGet_sequences(), and CBlast4_request_body_Base::GetQueue_search().
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Verify selection, throw exception if it differs from the expected.
index | Expected selection. |
Definition at line 263 of file Blast4_subject_.hpp.
References CBlast4_subject_Base::m_choice, and CBlast4_subject_Base::ThrowInvalidSelection().
Referenced by CBlast4_subject_Base::GetDatabase(), CBlast4_subject_Base::GetSeq_loc_list(), and CBlast4_subject_Base::GetSequences().
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Verify selection, throw exception if it differs from the expected.
index | Expected selection. |
Definition at line 913 of file Blast4_value_.hpp.
References CBlast4_value_Base::m_choice, and CBlast4_value_Base::ThrowInvalidSelection().
Referenced by CBlast4_value_Base::GetBig_integer(), CBlast4_value_Base::GetBig_integer_list(), CBlast4_value_Base::GetBioseq(), CBlast4_value_Base::GetBioseq_list(), CBlast4_value_Base::GetBioseq_set(), CBlast4_value_Base::GetBoolean(), CBlast4_value_Base::GetBoolean_list(), CBlast4_value_Base::GetCutoff(), CBlast4_value_Base::GetCutoff_list(), CBlast4_value_Base::GetInteger(), CBlast4_value_Base::GetInteger_list(), CBlast4_value_Base::GetMatrix(), CBlast4_value_Base::GetMatrix_list(), CBlast4_value_Base::GetQuery_mask(), CBlast4_value_Base::GetReal(), CBlast4_value_Base::GetReal_list(), CBlast4_value_Base::GetSeq_align(), CBlast4_value_Base::GetSeq_align_list(), CBlast4_value_Base::GetSeq_align_set(), CBlast4_value_Base::GetSeq_id(), CBlast4_value_Base::GetSeq_id_list(), CBlast4_value_Base::GetSeq_loc(), CBlast4_value_Base::GetSeq_loc_list(), CBlast4_value_Base::GetStrand_type(), CBlast4_value_Base::GetStrand_type_list(), CBlast4_value_Base::GetString(), and CBlast4_value_Base::GetString_list().
CBlast4_get_search_results_reply_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_get_search_results_request_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_get_search_status_reply_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_get_search_status_request_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_get_search_strategy_reply_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_get_search_strategy_request_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_get_windowmasked_taxids_reply_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_alignments_for_query_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_archive_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_cutoff_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_database_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_database_info_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_error_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_finish_params_reply_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_get_databases_ex_reply_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_get_databases_reply_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_get_matrices_reply_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_get_parameters_reply_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_get_paramsets_reply_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_get_programs_reply_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_get_queries_reply_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_get_seq_parts_reply_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_get_sequences_request_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_get_sequences_reply_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_ka_block_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_mask_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_matrix_id_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_parameter_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_parameter_info_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_parameters_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_phi_alignments_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_program_info_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_queries_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_queue_search_reply_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_queue_search_request_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_range_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_reply_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_reply_body_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_request_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_request_body_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_seq_part_data_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_simple_alignment_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_simple_results_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_subject_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_task_info_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_value_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_finish_params_request_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_get_databases_ex_request_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_get_protocol_info_reply_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_get_protocol_info_request_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_get_request_info_reply_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_get_request_info_request_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_get_search_info_reply_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_get_search_info_request_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CBlast4_get_seq_parts_request_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
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Definition at line 61 of file Blast4_cutoff_.cpp.
References CBlast4_cutoff_Base::e_E_value, CBlast4_cutoff_Base::e_Raw_score, CBlast4_cutoff_Base::m_choice, CBlast4_cutoff_Base::m_E_value, and CBlast4_cutoff_Base::m_Raw_score.
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Definition at line 99 of file Blast4_reply_body_.cpp.
References CObject::AddReference(), CBlast4_reply_body_Base::e_Finish_params, CBlast4_reply_body_Base::e_Get_databases, CBlast4_reply_body_Base::e_Get_databases_ex, CBlast4_reply_body_Base::e_Get_matrices, CBlast4_reply_body_Base::e_Get_parameters, CBlast4_reply_body_Base::e_Get_paramsets, CBlast4_reply_body_Base::e_Get_programs, CBlast4_reply_body_Base::e_Get_protocol_info, CBlast4_reply_body_Base::e_Get_queries, CBlast4_reply_body_Base::e_Get_request_info, CBlast4_reply_body_Base::e_Get_search_info, CBlast4_reply_body_Base::e_Get_search_results, CBlast4_reply_body_Base::e_Get_sequence_parts, CBlast4_reply_body_Base::e_Get_sequences, CBlast4_reply_body_Base::e_Get_windowmasked_taxids, CBlast4_reply_body_Base::e_Queue_search, CBlast4_reply_body_Base::m_choice, and CBlast4_reply_body_Base::m_object.
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Definition at line 85 of file Blast4_request_body_.cpp.
References CObject::AddReference(), CBlast4_request_body_Base::e_Finish_params, CBlast4_request_body_Base::e_Get_databases_ex, CBlast4_request_body_Base::e_Get_protocol_info, CBlast4_request_body_Base::e_Get_request_info, CBlast4_request_body_Base::e_Get_search_info, CBlast4_request_body_Base::e_Get_search_results, CBlast4_request_body_Base::e_Get_sequence_parts, CBlast4_request_body_Base::e_Get_sequences, CBlast4_request_body_Base::e_Queue_search, CBlast4_request_body_Base::m_choice, and CBlast4_request_body_Base::m_object.
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Definition at line 76 of file Blast4_subject_.cpp.
References CBlast4_subject_Base::e_Database, CBlast4_subject_Base::e_Seq_loc_list, CBlast4_subject_Base::e_Sequences, CBlast4_subject_Base::m_choice, CBlast4_subject_Base::m_Seq_loc_list, CBlast4_subject_Base::m_Sequences, and CBlast4_subject_Base::m_string.
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Definition at line 124 of file Blast4_value_.cpp.
References CObject::AddReference(), CBlast4_value_Base::e_Big_integer, CBlast4_value_Base::e_Big_integer_list, CBlast4_value_Base::e_Bioseq, CBlast4_value_Base::e_Bioseq_list, CBlast4_value_Base::e_Bioseq_set, CBlast4_value_Base::e_Boolean, CBlast4_value_Base::e_Boolean_list, CBlast4_value_Base::e_Cutoff, CBlast4_value_Base::e_Cutoff_list, CBlast4_value_Base::e_Integer, CBlast4_value_Base::e_Integer_list, CBlast4_value_Base::e_Matrix, CBlast4_value_Base::e_Matrix_list, CBlast4_value_Base::e_Query_mask, CBlast4_value_Base::e_Real, CBlast4_value_Base::e_Real_list, CBlast4_value_Base::e_Seq_align, CBlast4_value_Base::e_Seq_align_list, CBlast4_value_Base::e_Seq_align_set, CBlast4_value_Base::e_Seq_id, CBlast4_value_Base::e_Seq_id_list, CBlast4_value_Base::e_Seq_loc, CBlast4_value_Base::e_Seq_loc_list, CBlast4_value_Base::e_Strand_type, CBlast4_value_Base::e_Strand_type_list, CBlast4_value_Base::e_String, CBlast4_value_Base::e_String_list, CBlast4_value_Base::m_Big_integer, CBlast4_value_Base::m_Big_integer_list, CBlast4_value_Base::m_Bioseq_list, CBlast4_value_Base::m_Boolean, CBlast4_value_Base::m_Boolean_list, CBlast4_value_Base::m_choice, CBlast4_value_Base::m_Cutoff_list, CBlast4_value_Base::m_Integer, CBlast4_value_Base::m_Integer_list, CBlast4_value_Base::m_Matrix_list, CBlast4_value_Base::m_object, CBlast4_value_Base::m_Real, CBlast4_value_Base::m_Real_list, CBlast4_value_Base::m_Seq_align_list, CBlast4_value_Base::m_Seq_id_list, CBlast4_value_Base::m_Seq_loc_list, CBlast4_value_Base::m_Strand_type, CBlast4_value_Base::m_Strand_type_list, CBlast4_value_Base::m_string, and CBlast4_value_Base::m_String_list.
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Definition at line 103 of file Blas_get_searc_strat_reply_.hpp.
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Get the member data.
Definition at line 160 of file Blas_get_windo_taxid_reply_.hpp.
References CBlast4_get_windowmasked_taxids_reply_Base::m_data.
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Definition at line 101 of file Blast4_finish_params_reply_.hpp.
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Get the member data.
Definition at line 164 of file Blast4_get_databa_ex_reply_.hpp.
References CBlast4_get_databases_ex_reply_Base::m_data.
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Get the member data.
Definition at line 164 of file Blast4_get_databases_reply_.hpp.
References CBlast4_get_databases_reply_Base::m_data.
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Get the member data.
Definition at line 164 of file Blast4_get_matrices_reply_.hpp.
References CBlast4_get_matrices_reply_Base::m_data.
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Get the member data.
Definition at line 164 of file Blast4_get_parameter_reply_.hpp.
References CBlast4_get_parameters_reply_Base::m_data.
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Get the member data.
Definition at line 167 of file Blast4_get_paramsets_reply_.hpp.
References CBlast4_get_paramsets_reply_Base::m_data.
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Get the member data.
Definition at line 164 of file Blast4_get_programs_reply_.hpp.
References CBlast4_get_programs_reply_Base::m_data.
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Get the member data.
Definition at line 164 of file Blast4_get_seq_parts_reply_.hpp.
References CBlast4_get_seq_parts_reply_Base::m_data.
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Get the member data.
Definition at line 164 of file Blast4_get_sequences_reply_.hpp.
References CBlast4_get_sequences_reply_Base::m_data.
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Get the member data.
Definition at line 164 of file Blast4_parameters_.hpp.
References CBlast4_parameters_Base::m_data.
Referenced by CBlast4_parameters::GetParamByName().
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Definition at line 101 of file Blast_get_proto_info_reply_.hpp.
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Definition at line 102 of file Blast_get_proto_info_reque_.hpp.
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Get the Algorithm_options member data.
Definition at line 672 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::CanGetAlgorithm_options(), CBlast4_queue_search_request_Base::m_Algorithm_options, and CSerialObject::ThrowUnassigned().
Referenced by BOOST_AUTO_TEST_CASE(), and CImportStrategy::FetchData().
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Get the Algorithm_options member data.
Definition at line 701 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::m_Algorithm_options, and CBlast4_get_request_info_reply_Base::ResetAlgorithm_options().
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Get the Alignments member data.
Definition at line 404 of file Blas_get_searc_resul_reply_.hpp.
References CBlast4_get_search_results_reply_Base::CanGetAlignments(), CBlast4_get_search_results_reply_Base::m_Alignments, and CSerialObject::ThrowUnassigned().
Referenced by BOOST_AUTO_TEST_CASE(), and CMultiAligner::x_SetDomainHits().
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Get the Alignments member data.
Definition at line 261 of file Blast4_alignment_for_query_.hpp.
References CBlast4_alignments_for_query_Base::m_Alignments.
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Get the All_alignments member data.
Definition at line 170 of file Blast4_simple_results_.hpp.
References CBlast4_simple_results_Base::m_All_alignments.
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Get the variant data.
Definition at line 942 of file Blast4_value_.hpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_Big_integer, and CBlast4_value_Base::m_Big_integer.
Referenced by CBlast4Field::GetBig_integer(), and CBlastOptionsBuilder::x_ProcessOneOption().
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Get the variant data.
Definition at line 1133 of file Blast4_value_.hpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_Big_integer_list, and CBlast4_value_Base::m_Big_integer_list.
Referenced by CBlastOptionsBuilder::x_ProcessOneOption().
const CBlast4_value_Base::TBioseq & CBlast4_value_Base::GetBioseq | ( | void | ) | const |
Get the variant data.
Definition at line 255 of file Blast4_value_.cpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_Bioseq, and CBlast4_value_Base::m_object.
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Get the variant data.
Definition at line 1153 of file Blast4_value_.hpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_Bioseq_list, and CBlast4_value_Base::m_Bioseq_list.
const CBlast4_queries_Base::TBioseq_set & CBlast4_queries_Base::GetBioseq_set | ( | void | ) | const |
Get the variant data.
Definition at line 132 of file Blast4_queries_.cpp.
References CBlast4_queries_Base::CheckSelected(), CBlast4_queries_Base::e_Bioseq_set, and CBlast4_queries_Base::m_object.
Referenced by BOOST_AUTO_TEST_CASE(), CBlast4_queries::GetNumQueries(), s_ImportQueries(), CBlastFormatterApp::x_ExtractQueries(), CBlastFormatterVdbApp::x_ExtractQueries(), CRemoteBlast::x_ExtractQueryIds(), and CMultiAligner::x_SetDomainHits().
const CBlast4_value_Base::TBioseq_set & CBlast4_value_Base::GetBioseq_set | ( | void | ) | const |
Get the variant data.
Definition at line 393 of file Blast4_value_.cpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_Bioseq_set, and CBlast4_value_Base::m_object.
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Get the Bit_score member data.
Definition at line 525 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::CanGetBit_score(), CBlast4_simple_alignment_Base::m_Bit_score, and CSerialObject::ThrowUnassigned().
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Get the Body member data.
Definition at line 273 of file Blast4_reply_.hpp.
References CBlast4_reply_Base::m_Body, and CBlast4_reply_Base::ResetBody().
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Get the Body member data.
Definition at line 304 of file Blast4_request_.hpp.
References CBlast4_request_Base::m_Body, and CBlast4_request_Base::ResetBody().
Referenced by BOOST_AUTO_TEST_CASE(), s_BuildArchiveAll(), and CMultiAligner::x_SetDomainHits().
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Get the variant data.
Definition at line 975 of file Blast4_value_.hpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_Boolean, and CBlast4_value_Base::m_Boolean.
Referenced by CBlast4Field::GetBoolean(), and CBlastOptionsBuilder::x_ProcessOneOption().
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Get the variant data.
Definition at line 1173 of file Blast4_value_.hpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_Boolean_list, and CBlast4_value_Base::m_Boolean_list.
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Get the Code member data.
Definition at line 259 of file Blast4_error_.hpp.
References CBlast4_error_Base::CanGetCode(), CBlast4_error_Base::m_Code, and CSerialObject::ThrowUnassigned().
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Get the Created_by member data.
Definition at line 624 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::CanGetCreated_by(), CBlast4_get_request_info_reply_Base::m_Created_by, and CSerialObject::ThrowUnassigned().
const CBlast4_value_Base::TCutoff & CBlast4_value_Base::GetCutoff | ( | void | ) | const |
Get the variant data.
Definition at line 277 of file Blast4_value_.cpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_Cutoff, and CBlast4_value_Base::m_object.
Referenced by CBlast4Field::GetCutoff(), and CBlastOptionsBuilder::x_ProcessOneOption().
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Get the variant data.
Definition at line 1193 of file Blast4_value_.hpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_Cutoff_list, and CBlast4_value_Base::m_Cutoff_list.
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Get the Data member data.
Definition at line 245 of file Blast4_seq_part_data_.hpp.
References CBlast4_seq_part_data_Base::m_Data, and CBlast4_seq_part_data_Base::ResetData().
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Get the Database member data.
Definition at line 458 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::m_Database, and CBlast4_database_info_Base::ResetDatabase().
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Get the Database member data.
Definition at line 300 of file Blast4_get_sequenc_request_.hpp.
References CBlast4_get_sequences_request_Base::m_Database, and CBlast4_get_sequences_request_Base::ResetDatabase().
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Get the variant data.
Definition at line 292 of file Blast4_subject_.hpp.
References CBlast4_subject_Base::CheckSelected(), CBlast4_subject_Base::e_Database, and CBlast4_subject_Base::m_string.
Referenced by BOOST_AUTO_TEST_CASE(), and s_ImportDatabase().
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Get the Database member data.
Definition at line 500 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::m_Database, and CBlast4_get_request_info_reply_Base::ResetDatabase().
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Get the Database member data.
Definition at line 216 of file Blast_get_seq_parts_reques_.hpp.
References CBlast4_get_seq_parts_request_Base::m_Database, and CBlast4_get_seq_parts_request_Base::ResetDatabase().
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Definition at line 178 of file blastclient_.hpp.
References CBlast4Client_Base::m_DefaultRequest.
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Get the Description member data.
Definition at line 488 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::CanGetDescription(), CBlast4_database_info_Base::m_Description, and CSerialObject::ThrowUnassigned().
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Get the Documentation member data.
Definition at line 262 of file Blast4_task_info_.hpp.
References CBlast4_task_info_Base::CanGetDocumentation(), CBlast4_task_info_Base::m_Documentation, and CSerialObject::ThrowUnassigned().
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Get the variant data.
Definition at line 302 of file Blast4_cutoff_.hpp.
References CBlast4_cutoff_Base::CheckSelected(), CBlast4_cutoff_Base::e_E_value, and CBlast4_cutoff_Base::m_E_value.
Referenced by CBlastOptionsBuilder::x_ProcessOneOption().
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Get the E_value member data.
Definition at line 478 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::CanGetE_value(), CBlast4_simple_alignment_Base::m_E_value, and CSerialObject::ThrowUnassigned().
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Get the End member data.
Definition at line 303 of file Blast4_range_.hpp.
References CBlast4_range_Base::CanGetEnd(), CBlast4_range_Base::m_End, and CSerialObject::ThrowUnassigned().
Referenced by CBlast4_range::operator TSeqRange().
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Get the Errors member data.
Definition at line 248 of file Blast4_reply_.hpp.
References CBlast4_reply_Base::m_Errors.
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Get the Extended member data.
Definition at line 770 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::CanGetExtended(), CBlast4_database_info_Base::m_Extended, and CSerialObject::ThrowUnassigned().
const CBlast4_reply_body_Base::TFinish_params & CBlast4_reply_body_Base::GetFinish_params | ( | void | ) | const |
Get the variant data.
Definition at line 186 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::CheckSelected(), CBlast4_reply_body_Base::e_Finish_params, and CBlast4_reply_body_Base::m_object.
const CBlast4_request_body_Base::TFinish_params & CBlast4_request_body_Base::GetFinish_params | ( | void | ) | const |
Get the variant data.
Definition at line 150 of file Blast4_request_body_.cpp.
References CBlast4_request_body_Base::CheckSelected(), CBlast4_request_body_Base::e_Finish_params, and CBlast4_request_body_Base::m_object.
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Get the Format_options member data.
Definition at line 714 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::CanGetFormat_options(), CBlast4_queue_search_request_Base::m_Format_options, and CSerialObject::ThrowUnassigned().
Referenced by CImportStrategy::FetchData().
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Get the Format_options member data.
Definition at line 761 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::CanGetFormat_options(), CBlast4_get_request_info_reply_Base::m_Format_options, and CSerialObject::ThrowUnassigned().
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Get the Frame member data.
Definition at line 255 of file Blast4_mask_.hpp.
References CBlast4_mask_Base::CanGetFrame(), CBlast4_mask_Base::m_Frame, and CSerialObject::ThrowUnassigned().
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Get the Full_query_range member data.
Definition at line 659 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::m_Full_query_range, and CBlast4_simple_alignment_Base::ResetFull_query_range().
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Get the Full_subject_range member data.
Definition at line 689 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::m_Full_subject_range, and CBlast4_simple_alignment_Base::ResetFull_subject_range().
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Get the Gapped member data.
Definition at line 434 of file Blast4_ka_block_.hpp.
References CBlast4_ka_block_Base::CanGetGapped(), CBlast4_ka_block_Base::m_Gapped, and CSerialObject::ThrowUnassigned().
const CBlast4_reply_body_Base::TGet_databases & CBlast4_reply_body_Base::GetGet_databases | ( | void | ) | const |
Get the variant data.
Definition at line 208 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::CheckSelected(), CBlast4_reply_body_Base::e_Get_databases, and CBlast4_reply_body_Base::m_object.
const CBlast4_reply_body_Base::TGet_databases_ex & CBlast4_reply_body_Base::GetGet_databases_ex | ( | void | ) | const |
Get the variant data.
Definition at line 516 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::CheckSelected(), CBlast4_reply_body_Base::e_Get_databases_ex, and CBlast4_reply_body_Base::m_object.
const CBlast4_request_body_Base::TGet_databases_ex & CBlast4_request_body_Base::GetGet_databases_ex | ( | void | ) | const |
Get the variant data.
Definition at line 326 of file Blast4_request_body_.cpp.
References CBlast4_request_body_Base::CheckSelected(), CBlast4_request_body_Base::e_Get_databases_ex, and CBlast4_request_body_Base::m_object.
const CBlast4_reply_body_Base::TGet_matrices & CBlast4_reply_body_Base::GetGet_matrices | ( | void | ) | const |
Get the variant data.
Definition at line 230 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::CheckSelected(), CBlast4_reply_body_Base::e_Get_matrices, and CBlast4_reply_body_Base::m_object.
const CBlast4_reply_body_Base::TGet_parameters & CBlast4_reply_body_Base::GetGet_parameters | ( | void | ) | const |
Get the variant data.
Definition at line 252 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::CheckSelected(), CBlast4_reply_body_Base::e_Get_parameters, and CBlast4_reply_body_Base::m_object.
const CBlast4_reply_body_Base::TGet_paramsets & CBlast4_reply_body_Base::GetGet_paramsets | ( | void | ) | const |
Get the variant data.
Definition at line 274 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::CheckSelected(), CBlast4_reply_body_Base::e_Get_paramsets, and CBlast4_reply_body_Base::m_object.
const CBlast4_reply_body_Base::TGet_programs & CBlast4_reply_body_Base::GetGet_programs | ( | void | ) | const |
Get the variant data.
Definition at line 296 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::CheckSelected(), CBlast4_reply_body_Base::e_Get_programs, and CBlast4_reply_body_Base::m_object.
const CBlast4_reply_body_Base::TGet_protocol_info & CBlast4_reply_body_Base::GetGet_protocol_info | ( | void | ) | const |
Get the variant data.
Definition at line 472 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::CheckSelected(), CBlast4_reply_body_Base::e_Get_protocol_info, and CBlast4_reply_body_Base::m_object.
const CBlast4_request_body_Base::TGet_protocol_info & CBlast4_request_body_Base::GetGet_protocol_info | ( | void | ) | const |
Get the variant data.
Definition at line 282 of file Blast4_request_body_.cpp.
References CBlast4_request_body_Base::CheckSelected(), CBlast4_request_body_Base::e_Get_protocol_info, and CBlast4_request_body_Base::m_object.
const CBlast4_reply_body_Base::TGet_queries & CBlast4_reply_body_Base::GetGet_queries | ( | void | ) | const |
Get the variant data.
Definition at line 384 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::CheckSelected(), CBlast4_reply_body_Base::e_Get_queries, and CBlast4_reply_body_Base::m_object.
const CBlast4_reply_body_Base::TGet_request_info & CBlast4_reply_body_Base::GetGet_request_info | ( | void | ) | const |
Get the variant data.
Definition at line 406 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::CheckSelected(), CBlast4_reply_body_Base::e_Get_request_info, and CBlast4_reply_body_Base::m_object.
const CBlast4_request_body_Base::TGet_request_info & CBlast4_request_body_Base::GetGet_request_info | ( | void | ) | const |
Get the variant data.
Definition at line 238 of file Blast4_request_body_.cpp.
References CBlast4_request_body_Base::CheckSelected(), CBlast4_request_body_Base::e_Get_request_info, and CBlast4_request_body_Base::m_object.
const CBlast4_reply_body_Base::TGet_search_info & CBlast4_reply_body_Base::GetGet_search_info | ( | void | ) | const |
Get the variant data.
Definition at line 494 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::CheckSelected(), CBlast4_reply_body_Base::e_Get_search_info, and CBlast4_reply_body_Base::m_object.
const CBlast4_request_body_Base::TGet_search_info & CBlast4_request_body_Base::GetGet_search_info | ( | void | ) | const |
Get the variant data.
Definition at line 304 of file Blast4_request_body_.cpp.
References CBlast4_request_body_Base::CheckSelected(), CBlast4_request_body_Base::e_Get_search_info, and CBlast4_request_body_Base::m_object.
const CBlast4_reply_body_Base::TGet_search_results & CBlast4_reply_body_Base::GetGet_search_results | ( | void | ) | const |
Get the variant data.
Definition at line 318 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::CheckSelected(), CBlast4_reply_body_Base::e_Get_search_results, and CBlast4_reply_body_Base::m_object.
const CBlast4_request_body_Base::TGet_search_results & CBlast4_request_body_Base::GetGet_search_results | ( | void | ) | const |
Get the variant data.
Definition at line 172 of file Blast4_request_body_.cpp.
References CBlast4_request_body_Base::CheckSelected(), CBlast4_request_body_Base::e_Get_search_results, and CBlast4_request_body_Base::m_object.
const CBlast4_reply_body_Base::TGet_sequence_parts & CBlast4_reply_body_Base::GetGet_sequence_parts | ( | void | ) | const |
Get the variant data.
Definition at line 428 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::CheckSelected(), CBlast4_reply_body_Base::e_Get_sequence_parts, and CBlast4_reply_body_Base::m_object.
const CBlast4_request_body_Base::TGet_sequence_parts & CBlast4_request_body_Base::GetGet_sequence_parts | ( | void | ) | const |
Get the variant data.
Definition at line 260 of file Blast4_request_body_.cpp.
References CBlast4_request_body_Base::CheckSelected(), CBlast4_request_body_Base::e_Get_sequence_parts, and CBlast4_request_body_Base::m_object.
const CBlast4_reply_body_Base::TGet_sequences & CBlast4_reply_body_Base::GetGet_sequences | ( | void | ) | const |
Get the variant data.
Definition at line 340 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::CheckSelected(), CBlast4_reply_body_Base::e_Get_sequences, and CBlast4_reply_body_Base::m_object.
const CBlast4_request_body_Base::TGet_sequences & CBlast4_request_body_Base::GetGet_sequences | ( | void | ) | const |
Get the variant data.
Definition at line 194 of file Blast4_request_body_.cpp.
References CBlast4_request_body_Base::CheckSelected(), CBlast4_request_body_Base::e_Get_sequences, and CBlast4_request_body_Base::m_object.
const CBlast4_reply_body_Base::TGet_windowmasked_taxids & CBlast4_reply_body_Base::GetGet_windowmasked_taxids | ( | void | ) | const |
Get the variant data.
Definition at line 450 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::CheckSelected(), CBlast4_reply_body_Base::e_Get_windowmasked_taxids, and CBlast4_reply_body_Base::m_object.
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Get the H member data.
Definition at line 387 of file Blast4_ka_block_.hpp.
References CBlast4_ka_block_Base::CanGetH(), CBlast4_ka_block_Base::m_H, and CSerialObject::ThrowUnassigned().
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Get the Id member data.
Definition at line 215 of file Blast4_seq_part_data_.hpp.
References CBlast4_seq_part_data_Base::m_Id, and CBlast4_seq_part_data_Base::ResetId().
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Get the Ident member data.
Definition at line 257 of file Blast4_request_.hpp.
References CBlast4_request_Base::CanGetIdent(), CBlast4_request_Base::m_Ident, and CSerialObject::ThrowUnassigned().
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Get the Info member data.
Definition at line 262 of file Blast_get_searc_info_reply_.hpp.
References CBlast4_get_search_info_reply_Base::CanGetInfo(), CBlast4_get_search_info_reply_Base::m_Info, and CSerialObject::ThrowUnassigned().
Referenced by CRemoteBlast::x_GetStringFromSearchInfoReply(), and CRemoteBlast::x_GetSubjects().
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Get the Info member data.
Definition at line 263 of file Blast_get_searc_info_reque_.hpp.
References CBlast4_get_search_info_request_Base::CanGetInfo(), CBlast4_get_search_info_request_Base::m_Info, and CSerialObject::ThrowUnassigned().
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Get the variant data.
Definition at line 1008 of file Blast4_value_.hpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_Integer, and CBlast4_value_Base::m_Integer.
Referenced by CBlastOptionsBuilder::AdjustProgram(), CBlast4Field::GetInteger(), and CBlastOptionsBuilder::x_ProcessOneOption().
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Get the variant data.
Definition at line 1213 of file Blast4_value_.hpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_Integer_list, and CBlast4_value_Base::m_Integer_list.
Referenced by CBlast4Field::GetIntegerList(), and CBlastOptionsBuilder::x_ProcessOneOption().
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Get the K member data.
Definition at line 340 of file Blast4_ka_block_.hpp.
References CBlast4_ka_block_Base::CanGetK(), CBlast4_ka_block_Base::m_K, and CSerialObject::ThrowUnassigned().
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Get the Ka_blocks member data.
Definition at line 471 of file Blas_get_searc_resul_reply_.hpp.
References CBlast4_get_search_results_reply_Base::m_Ka_blocks.
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Get the Lambda member data.
Definition at line 293 of file Blast4_ka_block_.hpp.
References CBlast4_ka_block_Base::CanGetLambda(), CBlast4_ka_block_Base::m_Lambda, and CSerialObject::ThrowUnassigned().
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Get the Last_updated member data.
Definition at line 535 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::CanGetLast_updated(), CBlast4_database_info_Base::m_Last_updated, and CSerialObject::ThrowUnassigned().
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Get the Locations member data.
Definition at line 223 of file Blast4_mask_.hpp.
References CBlast4_mask_Base::m_Locations.
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Get the Masks member data.
Definition at line 446 of file Blas_get_searc_resul_reply_.hpp.
References CBlast4_get_search_results_reply_Base::m_Masks.
const CBlast4_value_Base::TMatrix & CBlast4_value_Base::GetMatrix | ( | void | ) | const |
Get the variant data.
Definition at line 299 of file Blast4_value_.cpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_Matrix, and CBlast4_value_Base::m_object.
Referenced by CBlast4Field::GetMatrix().
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Get the variant data.
Definition at line 1233 of file Blast4_value_.hpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_Matrix_list, and CBlast4_value_Base::m_Matrix_list.
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Get the Message member data.
Definition at line 299 of file Blast4_error_.hpp.
References CBlast4_error_Base::CanGetMessage(), CBlast4_error_Base::m_Message, and CSerialObject::ThrowUnassigned().
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Get the Messages member data.
Definition at line 314 of file Blast4_archive_.hpp.
References CBlast4_archive_Base::m_Messages.
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Get the Name member data.
Definition at line 212 of file Blast4_database_.hpp.
References CBlast4_database_Base::CanGetName(), CBlast4_database_Base::m_Name, and CSerialObject::ThrowUnassigned().
Referenced by CGBProjectHelper::AddProjectItemsFromRID(), BOOST_AUTO_TEST_CASE(), CBlastServices::GetDatabaseInfoLegacy(), CBlast4_database::operator==(), and CBlastFormatterApp::PrintFormattedOutput().
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Get the Name member data.
Definition at line 259 of file Blast4_matrix_id_.hpp.
References CBlast4_matrix_id_Base::CanGetName(), CBlast4_matrix_id_Base::m_Name, and CSerialObject::ThrowUnassigned().
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Get the Name member data.
Definition at line 215 of file Blast4_parameter_.hpp.
References CBlast4_parameter_Base::CanGetName(), CBlast4_parameter_Base::m_Name, and CSerialObject::ThrowUnassigned().
Referenced by CBlast4Field::Match().
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Get the Name member data.
Definition at line 212 of file Blast4_parameter_info_.hpp.
References CBlast4_parameter_info_Base::CanGetName(), CBlast4_parameter_info_Base::m_Name, and CSerialObject::ThrowUnassigned().
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Get the Name member data.
Definition at line 215 of file Blast4_task_info_.hpp.
References CBlast4_task_info_Base::CanGetName(), CBlast4_task_info_Base::m_Name, and CSerialObject::ThrowUnassigned().
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Get the Num_alignments member data.
Definition at line 215 of file Blast4_phi_alignments_.hpp.
References CBlast4_phi_alignments_Base::CanGetNum_alignments(), CBlast4_phi_alignments_Base::m_Num_alignments, and CSerialObject::ThrowUnassigned().
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Get the Num_identities member data.
Definition at line 572 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::CanGetNum_identities(), CBlast4_simple_alignment_Base::m_Num_identities, and CSerialObject::ThrowUnassigned().
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Get the Num_indels member data.
Definition at line 619 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::CanGetNum_indels(), CBlast4_simple_alignment_Base::m_Num_indels, and CSerialObject::ThrowUnassigned().
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Get the Num_sequences member data.
Definition at line 636 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::CanGetNum_sequences(), CBlast4_database_info_Base::m_Num_sequences, and CSerialObject::ThrowUnassigned().
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Get the Params member data.
Definition at line 439 of file Blast_finish_params_reques_.hpp.
References CBlast4_finish_params_request_Base::CanGetParams(), CBlast4_finish_params_request_Base::m_Params, and CSerialObject::ThrowUnassigned().
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Get the Params member data.
Definition at line 170 of file Blast_get_databa_ex_reques_.hpp.
References CBlast4_get_databases_ex_request_Base::CanGetParams(), CBlast4_get_databases_ex_request_Base::m_Params, and CSerialObject::ThrowUnassigned().
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Get the Paramset member data.
Definition at line 625 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::CanGetParamset(), CBlast4_queue_search_request_Base::m_Paramset, and CSerialObject::ThrowUnassigned().
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Get the Paramset member data.
Definition at line 392 of file Blast_finish_params_reques_.hpp.
References CBlast4_finish_params_request_Base::CanGetParamset(), CBlast4_finish_params_request_Base::m_Paramset, and CSerialObject::ThrowUnassigned().
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Get the Phi_alignments member data.
Definition at line 425 of file Blas_get_searc_resul_reply_.hpp.
References CBlast4_get_search_results_reply_Base::CanGetPhi_alignments(), CBlast4_get_search_results_reply_Base::m_Phi_alignments, and CSerialObject::ThrowUnassigned().
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Get the Program member data.
Definition at line 206 of file Blast4_program_info_.hpp.
References CBlast4_program_info_Base::CanGetProgram(), CBlast4_program_info_Base::m_Program, and CSerialObject::ThrowUnassigned().
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Get the Program member data.
Definition at line 471 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::CanGetProgram(), CBlast4_queue_search_request_Base::m_Program, and CSerialObject::ThrowUnassigned().
Referenced by BOOST_AUTO_TEST_CASE(), CImportStrategy::FetchData(), CExportStrategy::x_Process_Pssm(), and CExportStrategy::x_Process_Query().
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Get the Program member data.
Definition at line 298 of file Blast_finish_params_reques_.hpp.
References CBlast4_finish_params_request_Base::CanGetProgram(), CBlast4_finish_params_request_Base::m_Program, and CSerialObject::ThrowUnassigned().
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Get the Program member data.
Definition at line 530 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::CanGetProgram(), CBlast4_get_request_info_reply_Base::m_Program, and CSerialObject::ThrowUnassigned().
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Get the Program_options member data.
Definition at line 693 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::CanGetProgram_options(), CBlast4_queue_search_request_Base::m_Program_options, and CSerialObject::ThrowUnassigned().
Referenced by BOOST_AUTO_TEST_CASE(), and CImportStrategy::FetchData().
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Get the Program_options member data.
Definition at line 731 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::m_Program_options, and CBlast4_get_request_info_reply_Base::ResetProgram_options().
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Get the Pssm member data.
Definition at line 521 of file Blas_get_searc_resul_reply_.hpp.
References CBlast4_get_search_results_reply_Base::CanGetPssm(), CBlast4_get_search_results_reply_Base::m_Pssm, and CSerialObject::ThrowUnassigned().
const CBlast4_queries_Base::TPssm & CBlast4_queries_Base::GetPssm | ( | void | ) | const |
Get the variant data.
Definition at line 110 of file Blast4_queries_.cpp.
References CBlast4_queries_Base::CheckSelected(), CBlast4_queries_Base::e_Pssm, and CBlast4_queries_Base::m_object.
Referenced by s_ImportPssm(), CBlastFormatterApp::x_ExtractQueries(), CBlastFormatterVdbApp::x_ExtractQueries(), and CRemoteBlast::x_ExtractQueryIds().
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Get the Queries member data.
Definition at line 170 of file Blast4_get_queries_reply_.hpp.
References CBlast4_get_queries_reply_Base::m_Queries, and CBlast4_get_queries_reply_Base::ResetQueries().
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Get the Queries member data.
Definition at line 565 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::m_Queries, and CBlast4_queue_search_request_Base::ResetQueries().
Referenced by BOOST_AUTO_TEST_CASE(), and CMultiAligner::x_SetDomainHits().
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Get the Queries member data.
Definition at line 671 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::m_Queries, and CBlast4_get_request_info_reply_Base::ResetQueries().
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Get the Query_id member data.
Definition at line 214 of file Blast4_alignment_for_query_.hpp.
References CBlast4_alignments_for_query_Base::CanGetQuery_id(), CBlast4_alignments_for_query_Base::m_Query_id, and CSerialObject::ThrowUnassigned().
const CBlast4_value_Base::TQuery_mask & CBlast4_value_Base::GetQuery_mask | ( | void | ) | const |
Get the variant data.
Definition at line 437 of file Blast4_value_.cpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_Query_mask, and CBlast4_value_Base::m_object.
Referenced by CBlast4Field::GetQueryMask(), and CBlastOptionsBuilder::x_ProcessOneOption().
const CBlast4_reply_body_Base::TQueue_search & CBlast4_reply_body_Base::GetQueue_search | ( | void | ) | const |
Get the variant data.
Definition at line 362 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::CheckSelected(), CBlast4_reply_body_Base::e_Queue_search, and CBlast4_reply_body_Base::m_object.
const CBlast4_request_body_Base::TQueue_search & CBlast4_request_body_Base::GetQueue_search | ( | void | ) | const |
Get the variant data.
Definition at line 216 of file Blast4_request_body_.cpp.
References CBlast4_request_body_Base::CheckSelected(), CBlast4_request_body_Base::e_Queue_search, and CBlast4_request_body_Base::m_object.
Referenced by BOOST_AUTO_TEST_CASE(), s_BuildArchiveAll(), and CMultiAligner::x_SetDomainHits().
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Get the variant data.
Definition at line 329 of file Blast4_cutoff_.hpp.
References CBlast4_cutoff_Base::CheckSelected(), CBlast4_cutoff_Base::e_Raw_score, and CBlast4_cutoff_Base::m_Raw_score.
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Get the variant data.
Definition at line 1041 of file Blast4_value_.hpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_Real, and CBlast4_value_Base::m_Real.
Referenced by CBlast4Field::GetReal(), and CBlastOptionsBuilder::x_ProcessOneOption().
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Get the variant data.
Definition at line 1253 of file Blast4_value_.hpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_Real_list, and CBlast4_value_Base::m_Real_list.
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Get the Request member data.
Definition at line 254 of file Blast4_archive_.hpp.
References CBlast4_archive_Base::m_Request, and CBlast4_archive_Base::ResetRequest().
Referenced by BOOST_AUTO_TEST_CASE(), and CMultiAligner::x_SetDomainHits().
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Get the Request_id member data.
Definition at line 213 of file Blas_get_searc_resul_reque_.hpp.
References CBlast4_get_search_results_request_Base::CanGetRequest_id(), CBlast4_get_search_results_request_Base::m_Request_id, and CSerialObject::ThrowUnassigned().
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Get the Request_id member data.
Definition at line 172 of file Blas_get_searc_statu_reque_.hpp.
References CBlast4_get_search_status_request_Base::CanGetRequest_id(), CBlast4_get_search_status_request_Base::m_Request_id, and CSerialObject::ThrowUnassigned().
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Get the Request_id member data.
Definition at line 172 of file Blas_get_searc_strat_reque_.hpp.
References CBlast4_get_search_strategy_request_Base::CanGetRequest_id(), CBlast4_get_search_strategy_request_Base::m_Request_id, and CSerialObject::ThrowUnassigned().
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Get the Request_id member data.
Definition at line 171 of file Blast4_queue_search_reply_.hpp.
References CBlast4_queue_search_reply_Base::CanGetRequest_id(), CBlast4_queue_search_reply_Base::m_Request_id, and CSerialObject::ThrowUnassigned().
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Get the Request_id member data.
Definition at line 172 of file Blast_get_reque_info_reque_.hpp.
References CBlast4_get_request_info_request_Base::CanGetRequest_id(), CBlast4_get_request_info_request_Base::m_Request_id, and CSerialObject::ThrowUnassigned().
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Get the Request_id member data.
Definition at line 215 of file Blast_get_searc_info_reply_.hpp.
References CBlast4_get_search_info_reply_Base::CanGetRequest_id(), CBlast4_get_search_info_reply_Base::m_Request_id, and CSerialObject::ThrowUnassigned().
Referenced by CRemoteBlast::x_GetStringFromSearchInfoReply(), and CRemoteBlast::x_GetSubjects().
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Get the Request_id member data.
Definition at line 216 of file Blast_get_searc_info_reque_.hpp.
References CBlast4_get_search_info_request_Base::CanGetRequest_id(), CBlast4_get_search_info_request_Base::m_Request_id, and CSerialObject::ThrowUnassigned().
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Get the Residue_type member data.
Definition at line 219 of file Blast4_matrix_id_.hpp.
References CBlast4_matrix_id_Base::CanGetResidue_type(), CBlast4_matrix_id_Base::m_Residue_type, and CSerialObject::ThrowUnassigned().
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Get the Result_types member data.
Definition at line 267 of file Blas_get_searc_resul_reque_.hpp.
References CBlast4_get_search_results_request_Base::CanGetResult_types(), CBlast4_get_search_results_request_Base::m_Result_types, and CSerialObject::ThrowUnassigned().
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Get the Results member data.
Definition at line 284 of file Blast4_archive_.hpp.
References CBlast4_archive_Base::m_Results, and CBlast4_archive_Base::ResetResults().
Referenced by BOOST_AUTO_TEST_CASE(), and CMultiAligner::x_SetDomainHits().
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Get the Search_stats member data.
Definition at line 496 of file Blas_get_searc_resul_reply_.hpp.
References CBlast4_get_search_results_reply_Base::m_Search_stats.
const CBlast4_value_Base::TSeq_align & CBlast4_value_Base::GetSeq_align | ( | void | ) | const |
Get the variant data.
Definition at line 321 of file Blast4_value_.cpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_Seq_align, and CBlast4_value_Base::m_object.
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Get the variant data.
Definition at line 1273 of file Blast4_value_.hpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_Seq_align_list, and CBlast4_value_Base::m_Seq_align_list.
const CBlast4_value_Base::TSeq_align_set & CBlast4_value_Base::GetSeq_align_set | ( | void | ) | const |
Get the variant data.
Definition at line 415 of file Blast4_value_.cpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_Seq_align_set, and CBlast4_value_Base::m_object.
const CBlast4_value_Base::TSeq_id & CBlast4_value_Base::GetSeq_id | ( | void | ) | const |
Get the variant data.
Definition at line 343 of file Blast4_value_.cpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_Seq_id, and CBlast4_value_Base::m_object.
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Get the variant data.
Definition at line 1293 of file Blast4_value_.hpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_Seq_id_list, and CBlast4_value_Base::m_Seq_id_list.
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Get the Seq_ids member data.
Definition at line 330 of file Blast4_get_sequenc_request_.hpp.
References CBlast4_get_sequences_request_Base::m_Seq_ids.
const CBlast4_value_Base::TSeq_loc & CBlast4_value_Base::GetSeq_loc | ( | void | ) | const |
Get the variant data.
Definition at line 365 of file Blast4_value_.cpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_Seq_loc, and CBlast4_value_Base::m_object.
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Get the variant data.
Definition at line 306 of file Blast4_queries_.hpp.
References CBlast4_queries_Base::CheckSelected(), CBlast4_queries_Base::e_Seq_loc_list, and CBlast4_queries_Base::m_Seq_loc_list.
Referenced by CGBProjectHelper::AddProjectItemsFromRID(), CBlast4_queries::GetNumQueries(), s_ImportQueries(), CBlastFormatterApp::x_ExtractQueries(), CBlastFormatterVdbApp::x_ExtractQueries(), CRemoteBlast::x_ExtractQueryIds(), and CMultiAligner::x_SetDomainHits().
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Get the variant data.
Definition at line 332 of file Blast4_subject_.hpp.
References CBlast4_subject_Base::CheckSelected(), CBlast4_subject_Base::e_Seq_loc_list, and CBlast4_subject_Base::m_Seq_loc_list.
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Get the variant data.
Definition at line 1313 of file Blast4_value_.hpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_Seq_loc_list, and CBlast4_value_Base::m_Seq_loc_list.
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Get the Seq_locations member data.
Definition at line 246 of file Blast_get_seq_parts_reques_.hpp.
References CBlast4_get_seq_parts_request_Base::m_Seq_locations.
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Get the Seq_locs member data.
Definition at line 255 of file Blast4_phi_alignments_.hpp.
References CBlast4_phi_alignments_Base::m_Seq_locs.
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Get the Seqtech member data.
Definition at line 683 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::CanGetSeqtech(), CBlast4_database_info_Base::m_Seqtech, and CSerialObject::ThrowUnassigned().
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Get the variant data.
Definition at line 312 of file Blast4_subject_.hpp.
References CBlast4_subject_Base::CheckSelected(), CBlast4_subject_Base::e_Sequences, and CBlast4_subject_Base::m_Sequences.
Referenced by s_ImportSubjects().
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Get the Service member data.
Definition at line 518 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::CanGetService(), CBlast4_queue_search_request_Base::m_Service, and CSerialObject::ThrowUnassigned().
Referenced by BOOST_AUTO_TEST_CASE(), CImportStrategy::FetchData(), s_BuildArchiveAll(), CExportStrategy::x_Process_Pssm(), and CExportStrategy::x_Process_Query().
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Get the Service member data.
Definition at line 345 of file Blast_finish_params_reques_.hpp.
References CBlast4_finish_params_request_Base::CanGetService(), CBlast4_finish_params_request_Base::m_Service, and CSerialObject::ThrowUnassigned().
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Get the Service member data.
Definition at line 577 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::CanGetService(), CBlast4_get_request_info_reply_Base::m_Service, and CSerialObject::ThrowUnassigned().
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Get the Services member data.
Definition at line 253 of file Blast4_program_info_.hpp.
References CBlast4_program_info_Base::m_Services.
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Get the Simple_results member data.
Definition at line 542 of file Blas_get_searc_resul_reply_.hpp.
References CBlast4_get_search_results_reply_Base::CanGetSimple_results(), CBlast4_get_search_results_reply_Base::m_Simple_results, and CSerialObject::ThrowUnassigned().
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Get the Skip_seq_data member data.
Definition at line 368 of file Blast4_get_sequenc_request_.hpp.
References CBlast4_get_sequences_request_Base::m_Skip_seq_data.
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Get the Start member data.
Definition at line 256 of file Blast4_range_.hpp.
References CBlast4_range_Base::CanGetStart(), CBlast4_range_Base::m_Start, and CSerialObject::ThrowUnassigned().
Referenced by CBlast4_range::operator TSeqRange().
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Get the Status member data.
Definition at line 172 of file Blas_get_searc_statu_reply_.hpp.
References CBlast4_get_search_status_reply_Base::CanGetStatus(), CBlast4_get_search_status_reply_Base::m_Status, and CSerialObject::ThrowUnassigned().
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Get the Strand member data.
Definition at line 350 of file Blast4_range_.hpp.
References CBlast4_range_Base::CanGetStrand(), CBlast4_range_Base::m_Strand, and CSerialObject::ThrowUnassigned().
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Get the variant data.
Definition at line 1086 of file Blast4_value_.hpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_Strand_type, and CBlast4_value_Base::m_Strand_type.
Referenced by CBlast4Field::GetStrandType(), and CBlastOptionsBuilder::x_ProcessOneOption().
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Get the variant data.
Definition at line 1333 of file Blast4_value_.hpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_Strand_type_list, and CBlast4_value_Base::m_Strand_type_list.
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Get the variant data.
Definition at line 1113 of file Blast4_value_.hpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_String, and CBlast4_value_Base::m_string.
Referenced by CBlast4Field::GetString(), and CBlastOptionsBuilder::x_ProcessOneOption().
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Get the variant data.
Definition at line 1353 of file Blast4_value_.hpp.
References CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::e_String_list, and CBlast4_value_Base::m_String_list.
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Get the Subject member data.
Definition at line 595 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::m_Subject, and CBlast4_queue_search_request_Base::ResetSubject().
Referenced by BOOST_AUTO_TEST_CASE().
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Get the Subject_id member data.
Definition at line 424 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::CanGetSubject_id(), CBlast4_simple_alignment_Base::m_Subject_id, and CSerialObject::ThrowUnassigned().
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Get the Subjects member data.
Definition at line 782 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::CanGetSubjects(), CBlast4_get_request_info_reply_Base::m_Subjects, and CSerialObject::ThrowUnassigned().
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Get the Target_only member data.
Definition at line 412 of file Blast4_get_sequenc_request_.hpp.
References CBlast4_get_sequences_request_Base::CanGetTarget_only(), CBlast4_get_sequences_request_Base::m_Target_only, and CSerialObject::ThrowUnassigned().
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Get the Taxid member data.
Definition at line 730 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::CanGetTaxid(), CBlast4_database_info_Base::m_Taxid, and CSerialObject::ThrowUnassigned().
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Get the Total_length member data.
Definition at line 589 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::CanGetTotal_length(), CBlast4_database_info_Base::m_Total_length, and CSerialObject::ThrowUnassigned().
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Get the Type member data.
Definition at line 266 of file Blast4_database_.hpp.
References CBlast4_database_Base::CanGetType(), CBlast4_database_Base::m_Type, and CSerialObject::ThrowUnassigned().
Referenced by BOOST_AUTO_TEST_CASE(), CBlast4_database::IsProtein(), and CBlast4_database::operator==().
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Get the Type member data.
Definition at line 259 of file Blast4_parameter_info_.hpp.
References CBlast4_parameter_info_Base::CanGetType(), CBlast4_parameter_info_Base::m_Type, and CSerialObject::ThrowUnassigned().
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Get the Value member data.
Definition at line 262 of file Blast4_parameter_.hpp.
References CBlast4_parameter_Base::m_Value, and CBlast4_parameter_Base::ResetValue().
Referenced by CBlastOptionsBuilder::AdjustProgram(), CBlast4Field::GetBig_integer(), CBlast4Field::GetBoolean(), CBlast4Field::GetCutoff(), CBlast4Field::GetInteger(), CBlast4Field::GetIntegerList(), CBlast4Field::GetMatrix(), CBlast4Field::GetQueryMask(), CBlast4Field::GetReal(), CBlast4Field::GetStrandType(), CBlast4Field::GetString(), and CBlast4Field::Match().
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Check if variant Big_integer is selected.
Big_integer type is defined as 'typedef Int8 TBig_integer'.
Definition at line 936 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Big_integer, and CBlast4_value_Base::m_choice.
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Check if variant Big_integer_list is selected.
Big_integer_list type is defined as 'typedef list< Int8 > TBig_integer_list'.
Definition at line 1127 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Big_integer_list, and CBlast4_value_Base::m_choice.
Referenced by CBlastOptionsBuilder::x_ProcessOneOption().
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Check if variant Bioseq is selected.
Bioseq type is defined as 'typedef CBioseq TBioseq'.
Definition at line 963 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Bioseq, and CBlast4_value_Base::m_choice.
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Check if variant Bioseq_list is selected.
Bioseq_list type is defined as 'typedef list< CRef< CBioseq > > TBioseq_list'.
Definition at line 1147 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Bioseq_list, and CBlast4_value_Base::m_choice.
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Check if variant Bioseq_set is selected.
Bioseq_set type is defined as 'typedef CBioseq_set TBioseq_set'.
Definition at line 320 of file Blast4_queries_.hpp.
References CBlast4_queries_Base::e_Bioseq_set, and CBlast4_queries_Base::m_choice.
Referenced by CGBProjectHelper::AddProjectItemsFromRID(), BOOST_AUTO_TEST_CASE(), s_ImportQueries(), CBlastFormatterApp::x_ExtractQueries(), CBlastFormatterVdbApp::x_ExtractQueries(), CRemoteBlast::x_ExtractQueryIds(), and CMultiAligner::x_SetDomainHits().
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Check if variant Bioseq_set is selected.
Bioseq_set type is defined as 'typedef CBioseq_set TBioseq_set'.
Definition at line 1367 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Bioseq_set, and CBlast4_value_Base::m_choice.
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Check if variant Boolean is selected.
Boolean type is defined as 'typedef bool TBoolean'.
Definition at line 969 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Boolean, and CBlast4_value_Base::m_choice.
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Check if variant Boolean_list is selected.
Boolean_list type is defined as 'typedef list< bool > TBoolean_list'.
Definition at line 1167 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Boolean_list, and CBlast4_value_Base::m_choice.
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Check if variant Cutoff is selected.
Cutoff type is defined as 'typedef CBlast4_cutoff TCutoff'.
Definition at line 996 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Cutoff, and CBlast4_value_Base::m_choice.
Referenced by CBlastOptionsBuilder::x_ProcessOneOption().
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Check if variant Cutoff_list is selected.
Cutoff_list type is defined as 'typedef list< CRef< CBlast4_cutoff > > TCutoff_list'.
Definition at line 1187 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Cutoff_list, and CBlast4_value_Base::m_choice.
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Check if variant Database is selected.
Database type is defined as 'typedef string TDatabase'.
Definition at line 286 of file Blast4_subject_.hpp.
References CBlast4_subject_Base::e_Database, and CBlast4_subject_Base::m_choice.
Referenced by s_ImportDatabase(), and s_ImportSearchStrategy().
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Check if variant E_value is selected.
E_value type is defined as 'typedef double TE_value'.
Definition at line 296 of file Blast4_cutoff_.hpp.
References CBlast4_cutoff_Base::e_E_value, and CBlast4_cutoff_Base::m_choice.
Referenced by CBlastOptionsBuilder::x_ProcessOneOption().
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Check if variant Finish_params is selected.
Finish_params type is defined as 'typedef CBlast4_finish_params_reply TFinish_params'.
Definition at line 663 of file Blast4_reply_body_.hpp.
References CBlast4_reply_body_Base::e_Finish_params, and CBlast4_reply_body_Base::m_choice.
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Check if variant Finish_params is selected.
Finish_params type is defined as 'typedef CBlast4_finish_params_request TFinish_params'.
Definition at line 534 of file Blast4_request_body_.hpp.
References CBlast4_request_body_Base::e_Finish_params, and CBlast4_request_body_Base::m_choice.
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Check if variant Get_databases is selected.
Get_databases type is defined as 'typedef CBlast4_get_databases_reply TGet_databases'.
Definition at line 669 of file Blast4_reply_body_.hpp.
References CBlast4_reply_body_Base::e_Get_databases, and CBlast4_reply_body_Base::m_choice.
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Check if variant Get_databases is selected.
Definition at line 540 of file Blast4_request_body_.hpp.
References CBlast4_request_body_Base::e_Get_databases, and CBlast4_request_body_Base::m_choice.
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Check if variant Get_databases_ex is selected.
Get_databases_ex type is defined as 'typedef CBlast4_get_databases_ex_reply TGet_databases_ex'.
Definition at line 753 of file Blast4_reply_body_.hpp.
References CBlast4_reply_body_Base::e_Get_databases_ex, and CBlast4_reply_body_Base::m_choice.
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Check if variant Get_databases_ex is selected.
Get_databases_ex type is defined as 'typedef CBlast4_get_databases_ex_request TGet_databases_ex'.
Definition at line 654 of file Blast4_request_body_.hpp.
References CBlast4_request_body_Base::e_Get_databases_ex, and CBlast4_request_body_Base::m_choice.
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Check if variant Get_matrices is selected.
Get_matrices type is defined as 'typedef CBlast4_get_matrices_reply TGet_matrices'.
Definition at line 675 of file Blast4_reply_body_.hpp.
References CBlast4_reply_body_Base::e_Get_matrices, and CBlast4_reply_body_Base::m_choice.
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Check if variant Get_matrices is selected.
Definition at line 552 of file Blast4_request_body_.hpp.
References CBlast4_request_body_Base::e_Get_matrices, and CBlast4_request_body_Base::m_choice.
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Check if variant Get_parameters is selected.
Get_parameters type is defined as 'typedef CBlast4_get_parameters_reply TGet_parameters'.
Definition at line 681 of file Blast4_reply_body_.hpp.
References CBlast4_reply_body_Base::e_Get_parameters, and CBlast4_reply_body_Base::m_choice.
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Check if variant Get_parameters is selected.
Definition at line 564 of file Blast4_request_body_.hpp.
References CBlast4_request_body_Base::e_Get_parameters, and CBlast4_request_body_Base::m_choice.
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Check if variant Get_paramsets is selected.
Get_paramsets type is defined as 'typedef CBlast4_get_paramsets_reply TGet_paramsets'.
Definition at line 687 of file Blast4_reply_body_.hpp.
References CBlast4_reply_body_Base::e_Get_paramsets, and CBlast4_reply_body_Base::m_choice.
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Check if variant Get_paramsets is selected.
Definition at line 576 of file Blast4_request_body_.hpp.
References CBlast4_request_body_Base::e_Get_paramsets, and CBlast4_request_body_Base::m_choice.
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Check if variant Get_programs is selected.
Get_programs type is defined as 'typedef CBlast4_get_programs_reply TGet_programs'.
Definition at line 693 of file Blast4_reply_body_.hpp.
References CBlast4_reply_body_Base::e_Get_programs, and CBlast4_reply_body_Base::m_choice.
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Check if variant Get_programs is selected.
Definition at line 588 of file Blast4_request_body_.hpp.
References CBlast4_request_body_Base::e_Get_programs, and CBlast4_request_body_Base::m_choice.
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Check if variant Get_protocol_info is selected.
Get_protocol_info type is defined as 'typedef CBlast4_get_protocol_info_reply TGet_protocol_info'.
Definition at line 741 of file Blast4_reply_body_.hpp.
References CBlast4_reply_body_Base::e_Get_protocol_info, and CBlast4_reply_body_Base::m_choice.
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Check if variant Get_protocol_info is selected.
Get_protocol_info type is defined as 'typedef CBlast4_get_protocol_info_request TGet_protocol_info'.
Definition at line 642 of file Blast4_request_body_.hpp.
References CBlast4_request_body_Base::e_Get_protocol_info, and CBlast4_request_body_Base::m_choice.
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Check if variant Get_queries is selected.
Get_queries type is defined as 'typedef CBlast4_get_queries_reply TGet_queries'.
Definition at line 717 of file Blast4_reply_body_.hpp.
References CBlast4_reply_body_Base::e_Get_queries, and CBlast4_reply_body_Base::m_choice.
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Check if variant Get_request_info is selected.
Get_request_info type is defined as 'typedef CBlast4_get_request_info_reply TGet_request_info'.
Definition at line 723 of file Blast4_reply_body_.hpp.
References CBlast4_reply_body_Base::e_Get_request_info, and CBlast4_reply_body_Base::m_choice.
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Check if variant Get_request_info is selected.
Get_request_info type is defined as 'typedef CBlast4_get_request_info_request TGet_request_info'.
Definition at line 618 of file Blast4_request_body_.hpp.
References CBlast4_request_body_Base::e_Get_request_info, and CBlast4_request_body_Base::m_choice.
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Check if variant Get_search_info is selected.
Get_search_info type is defined as 'typedef CBlast4_get_search_info_reply TGet_search_info'.
Definition at line 747 of file Blast4_reply_body_.hpp.
References CBlast4_reply_body_Base::e_Get_search_info, and CBlast4_reply_body_Base::m_choice.
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Check if variant Get_search_info is selected.
Get_search_info type is defined as 'typedef CBlast4_get_search_info_request TGet_search_info'.
Definition at line 648 of file Blast4_request_body_.hpp.
References CBlast4_request_body_Base::e_Get_search_info, and CBlast4_request_body_Base::m_choice.
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Check if variant Get_search_results is selected.
Get_search_results type is defined as 'typedef CBlast4_get_search_results_reply TGet_search_results'.
Definition at line 699 of file Blast4_reply_body_.hpp.
References CBlast4_reply_body_Base::e_Get_search_results, and CBlast4_reply_body_Base::m_choice.
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Check if variant Get_search_results is selected.
Get_search_results type is defined as 'typedef CBlast4_get_search_results_request TGet_search_results'.
Definition at line 600 of file Blast4_request_body_.hpp.
References CBlast4_request_body_Base::e_Get_search_results, and CBlast4_request_body_Base::m_choice.
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Check if variant Get_sequence_parts is selected.
Get_sequence_parts type is defined as 'typedef CBlast4_get_seq_parts_reply TGet_sequence_parts'.
Definition at line 729 of file Blast4_reply_body_.hpp.
References CBlast4_reply_body_Base::e_Get_sequence_parts, and CBlast4_reply_body_Base::m_choice.
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Check if variant Get_sequence_parts is selected.
Get_sequence_parts type is defined as 'typedef CBlast4_get_seq_parts_request TGet_sequence_parts'.
Definition at line 624 of file Blast4_request_body_.hpp.
References CBlast4_request_body_Base::e_Get_sequence_parts, and CBlast4_request_body_Base::m_choice.
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Check if variant Get_sequences is selected.
Get_sequences type is defined as 'typedef CBlast4_get_sequences_reply TGet_sequences'.
Definition at line 705 of file Blast4_reply_body_.hpp.
References CBlast4_reply_body_Base::e_Get_sequences, and CBlast4_reply_body_Base::m_choice.
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Check if variant Get_sequences is selected.
Get_sequences type is defined as 'typedef CBlast4_get_sequences_request TGet_sequences'.
Definition at line 606 of file Blast4_request_body_.hpp.
References CBlast4_request_body_Base::e_Get_sequences, and CBlast4_request_body_Base::m_choice.
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Check if variant Get_windowmasked_taxids is selected.
Get_windowmasked_taxids type is defined as 'typedef CBlast4_get_windowmasked_taxids_reply TGet_windowmasked_taxids'.
Definition at line 735 of file Blast4_reply_body_.hpp.
References CBlast4_reply_body_Base::e_Get_windowmasked_taxids, and CBlast4_reply_body_Base::m_choice.
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Check if variant Get_windowmasked_taxids is selected.
Definition at line 630 of file Blast4_request_body_.hpp.
References CBlast4_request_body_Base::e_Get_windowmasked_taxids, and CBlast4_request_body_Base::m_choice.
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Check if variant Integer is selected.
Integer type is defined as 'typedef int TInteger'.
Definition at line 1002 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Integer, and CBlast4_value_Base::m_choice.
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Check if variant Integer_list is selected.
Integer_list type is defined as 'typedef list< int > TInteger_list'.
Definition at line 1207 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Integer_list, and CBlast4_value_Base::m_choice.
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Check if variant Matrix is selected.
Matrix type is defined as 'typedef CPssmWithParameters TMatrix'.
Definition at line 1029 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Matrix, and CBlast4_value_Base::m_choice.
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Check if variant Matrix_list is selected.
Matrix_list type is defined as 'typedef list< CRef< CPssmWithParameters > > TMatrix_list'.
Definition at line 1227 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Matrix_list, and CBlast4_value_Base::m_choice.
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Check if variant Pssm is selected.
Pssm type is defined as 'typedef CPssmWithParameters TPssm'.
Definition at line 294 of file Blast4_queries_.hpp.
References CBlast4_queries_Base::e_Pssm, and CBlast4_queries_Base::m_choice.
Referenced by BOOST_AUTO_TEST_CASE(), s_ImportSearchStrategy(), CBlastFormatterApp::x_ExtractQueries(), CBlastFormatterVdbApp::x_ExtractQueries(), and CRemoteBlast::x_ExtractQueryIds().
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Check if variant Query_mask is selected.
Query_mask type is defined as 'typedef CBlast4_mask TQuery_mask'.
Definition at line 1379 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Query_mask, and CBlast4_value_Base::m_choice.
Referenced by CBlastOptionsBuilder::x_ProcessOneOption().
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Check if variant Queue_search is selected.
Queue_search type is defined as 'typedef CBlast4_queue_search_reply TQueue_search'.
Definition at line 711 of file Blast4_reply_body_.hpp.
References CBlast4_reply_body_Base::e_Queue_search, and CBlast4_reply_body_Base::m_choice.
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Check if variant Queue_search is selected.
Queue_search type is defined as 'typedef CBlast4_queue_search_request TQueue_search'.
Definition at line 612 of file Blast4_request_body_.hpp.
References CBlast4_request_body_Base::e_Queue_search, and CBlast4_request_body_Base::m_choice.
Referenced by BOOST_AUTO_TEST_CASE(), and s_BuildArchiveAll().
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Check if variant Raw_score is selected.
Raw_score type is defined as 'typedef int TRaw_score'.
Definition at line 323 of file Blast4_cutoff_.hpp.
References CBlast4_cutoff_Base::e_Raw_score, and CBlast4_cutoff_Base::m_choice.
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Check if variant Real is selected.
Real type is defined as 'typedef double TReal'.
Definition at line 1035 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Real, and CBlast4_value_Base::m_choice.
Referenced by CBlastOptionsBuilder::x_ProcessOneOption().
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Check if variant Real_list is selected.
Real_list type is defined as 'typedef list< double > TReal_list'.
Definition at line 1247 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Real_list, and CBlast4_value_Base::m_choice.
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Check if variant Seq_align is selected.
Seq_align type is defined as 'typedef CSeq_align TSeq_align'.
Definition at line 1062 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Seq_align, and CBlast4_value_Base::m_choice.
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Check if variant Seq_align_list is selected.
Seq_align_list type is defined as 'typedef list< CRef< CSeq_align > > TSeq_align_list'.
Definition at line 1267 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Seq_align_list, and CBlast4_value_Base::m_choice.
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Check if variant Seq_align_set is selected.
Seq_align_set type is defined as 'typedef CSeq_align_set TSeq_align_set'.
Definition at line 1373 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Seq_align_set, and CBlast4_value_Base::m_choice.
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Check if variant Seq_id is selected.
Seq_id type is defined as 'typedef CSeq_id TSeq_id'.
Definition at line 1068 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Seq_id, and CBlast4_value_Base::m_choice.
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Check if variant Seq_id_list is selected.
Seq_id_list type is defined as 'typedef list< CRef< CSeq_id > > TSeq_id_list'.
Definition at line 1287 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Seq_id_list, and CBlast4_value_Base::m_choice.
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Check if variant Seq_loc is selected.
Seq_loc type is defined as 'typedef CSeq_loc TSeq_loc'.
Definition at line 1074 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Seq_loc, and CBlast4_value_Base::m_choice.
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Check if variant Seq_loc_list is selected.
Seq_loc_list type is defined as 'typedef list< CRef< CSeq_loc > > TSeq_loc_list'.
Definition at line 300 of file Blast4_queries_.hpp.
References CBlast4_queries_Base::e_Seq_loc_list, and CBlast4_queries_Base::m_choice.
Referenced by CGBProjectHelper::AddProjectItemsFromRID(), BOOST_AUTO_TEST_CASE(), s_ImportQueries(), CBlastFormatterApp::x_ExtractQueries(), CBlastFormatterVdbApp::x_ExtractQueries(), CRemoteBlast::x_ExtractQueryIds(), and CMultiAligner::x_SetDomainHits().
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Check if variant Seq_loc_list is selected.
Seq_loc_list type is defined as 'typedef list< CRef< CSeq_loc > > TSeq_loc_list'.
Definition at line 326 of file Blast4_subject_.hpp.
References CBlast4_subject_Base::e_Seq_loc_list, and CBlast4_subject_Base::m_choice.
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Check if variant Seq_loc_list is selected.
Seq_loc_list type is defined as 'typedef list< CRef< CSeq_loc > > TSeq_loc_list'.
Definition at line 1307 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Seq_loc_list, and CBlast4_value_Base::m_choice.
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Check if variant Sequences is selected.
Sequences type is defined as 'typedef list< CRef< CBioseq > > TSequences'.
Definition at line 306 of file Blast4_subject_.hpp.
References CBlast4_subject_Base::e_Sequences, and CBlast4_subject_Base::m_choice.
Referenced by BOOST_AUTO_TEST_CASE(), and s_ImportSubjects().
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Check if a value has been assigned to data member.
Data member is mandatory; its type is defined as 'typedef set< int > Tdata'
Definition at line 148 of file Blas_get_windo_taxid_reply_.hpp.
References CBlast4_get_windowmasked_taxids_reply_Base::m_set_State.
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Check if a value has been assigned to data member.
Data member is mandatory; its type is defined as 'typedef list< CRef< CBlast4_database_info > > Tdata'
Definition at line 152 of file Blast4_get_databa_ex_reply_.hpp.
References CBlast4_get_databases_ex_reply_Base::m_set_State.
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Check if a value has been assigned to data member.
Data member is mandatory; its type is defined as 'typedef list< CRef< CBlast4_database_info > > Tdata'
Definition at line 152 of file Blast4_get_databases_reply_.hpp.
References CBlast4_get_databases_reply_Base::m_set_State.
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Check if a value has been assigned to data member.
Data member is mandatory; its type is defined as 'typedef list< CRef< CBlast4_matrix_id > > Tdata'
Definition at line 152 of file Blast4_get_matrices_reply_.hpp.
References CBlast4_get_matrices_reply_Base::m_set_State.
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Check if a value has been assigned to data member.
Data member is mandatory; its type is defined as 'typedef list< CRef< CBlast4_parameter_info > > Tdata'
Definition at line 152 of file Blast4_get_parameter_reply_.hpp.
References CBlast4_get_parameters_reply_Base::m_set_State.
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Check if a value has been assigned to data member.
Data member is mandatory; its type is defined as 'typedef list< CRef< CBlast4_task_info > > Tdata'
Definition at line 155 of file Blast4_get_paramsets_reply_.hpp.
References CBlast4_get_paramsets_reply_Base::m_set_State.
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Check if a value has been assigned to data member.
Data member is mandatory; its type is defined as 'typedef list< CRef< CBlast4_program_info > > Tdata'
Definition at line 152 of file Blast4_get_programs_reply_.hpp.
References CBlast4_get_programs_reply_Base::m_set_State.
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Check if a value has been assigned to data member.
Data member is mandatory; its type is defined as 'typedef list< CRef< CBlast4_seq_part_data > > Tdata'
Definition at line 152 of file Blast4_get_seq_parts_reply_.hpp.
References CBlast4_get_seq_parts_reply_Base::m_set_State.
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Check if a value has been assigned to data member.
Data member is mandatory; its type is defined as 'typedef list< CRef< CBioseq > > Tdata'
Definition at line 152 of file Blast4_get_sequences_reply_.hpp.
References CBlast4_get_sequences_reply_Base::m_set_State.
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Check if a value has been assigned to data member.
Data member is mandatory; its type is defined as 'typedef list< CRef< CBlast4_parameter > > Tdata'
Definition at line 152 of file Blast4_parameters_.hpp.
References CBlast4_parameters_Base::m_set_State.
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Check if a value has been assigned to Algorithm_options data member.
Data member Algorithm_options is optional; its type is defined as 'typedef CBlast4_parameters TAlgorithm_options'
Definition at line 660 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::m_Algorithm_options.
Referenced by CBlast4_queue_search_request_Base::CanGetAlgorithm_options().
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Check if a value has been assigned to Algorithm_options data member.
Data member Algorithm_options is mandatory; its type is defined as 'typedef CBlast4_parameters TAlgorithm_options'
Definition at line 689 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::m_Algorithm_options.
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Check if a value has been assigned to Alignments data member.
Data member Alignments is optional; its type is defined as 'typedef CSeq_align_set TAlignments'
Definition at line 392 of file Blas_get_searc_resul_reply_.hpp.
References CBlast4_get_search_results_reply_Base::m_Alignments.
Referenced by CBlast4_get_search_results_reply_Base::CanGetAlignments().
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All the alignments for this query Check if a value has been assigned to Alignments data member.
Data member Alignments is mandatory; its type is defined as 'typedef list< CRef< CBlast4_simple_alignment > > TAlignments'
Definition at line 249 of file Blast4_alignment_for_query_.hpp.
References CBlast4_alignments_for_query_Base::m_set_State.
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Check if a value has been assigned to All_alignments data member.
Data member All_alignments is mandatory; its type is defined as 'typedef list< CRef< CBlast4_alignments_for_query > > TAll_alignments'
Definition at line 158 of file Blast4_simple_results_.hpp.
References CBlast4_simple_results_Base::m_set_State.
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Bit score Check if a value has been assigned to Bit_score data member.
Data member Bit_score is mandatory; its type is defined as 'typedef double TBit_score'
Definition at line 506 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::m_set_State.
Referenced by CBlast4_simple_alignment_Base::CanGetBit_score(), and CBlast4_simple_alignment_Base::SetBit_score().
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Check if a value has been assigned to Body data member.
Data member Body is mandatory; its type is defined as 'typedef CBlast4_reply_body TBody'
Definition at line 261 of file Blast4_reply_.hpp.
References CBlast4_reply_Base::m_Body.
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Payload of the request Check if a value has been assigned to Body data member.
Data member Body is mandatory; its type is defined as 'typedef CBlast4_request_body TBody'
Definition at line 292 of file Blast4_request_.hpp.
References CBlast4_request_Base::m_Body.
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This is an integer to allow for flexibility, but the values assigned should be of type Blast4-error-code Check if a value has been assigned to Code data member.
Data member Code is mandatory; its type is defined as 'typedef int TCode'
Definition at line 240 of file Blast4_error_.hpp.
References CBlast4_error_Base::m_set_State.
Referenced by CBlast4_error_Base::CanGetCode(), and CBlast4_error_Base::SetCode().
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Check if a value has been assigned to Created_by data member.
Data member Created_by is mandatory; its type is defined as 'typedef string TCreated_by'
Definition at line 612 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::m_set_State.
Referenced by CBlast4_get_request_info_reply_Base::CanGetCreated_by(), and CBlast4_get_request_info_reply_Base::SetCreated_by().
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Its sequence data (may be partial) Check if a value has been assigned to Data data member.
Data member Data is mandatory; its type is defined as 'typedef CSeq_data TData'
Definition at line 233 of file Blast4_seq_part_data_.hpp.
References CBlast4_seq_part_data_Base::m_Data, and CRef< C, Locker >::NotEmpty().
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Check if a value has been assigned to Database data member.
Data member Database is mandatory; its type is defined as 'typedef CBlast4_database TDatabase'
Definition at line 446 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::m_Database.
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Name of the BLAST database from which to retrieve the sequence data Check if a value has been assigned to Database data member.
Data member Database is mandatory; its type is defined as 'typedef CBlast4_database TDatabase'
Definition at line 288 of file Blast4_get_sequenc_request_.hpp.
References CBlast4_get_sequences_request_Base::m_Database.
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Check if a value has been assigned to Database data member.
Data member Database is mandatory; its type is defined as 'typedef CBlast4_database TDatabase'
Definition at line 488 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::m_Database.
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Name of the BLAST database from which to retrieve the sequence data Check if a value has been assigned to Database data member.
Data member Database is mandatory; its type is defined as 'typedef CBlast4_database TDatabase'
Definition at line 204 of file Blast_get_seq_parts_reques_.hpp.
References CBlast4_get_seq_parts_request_Base::m_Database.
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Check if a value has been assigned to Description data member.
Data member Description is mandatory; its type is defined as 'typedef string TDescription'
Definition at line 476 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::m_set_State.
Referenced by CBlast4_database_info_Base::CanGetDescription(), and CBlast4_database_info_Base::SetDescription().
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Description of the task Check if a value has been assigned to Documentation data member.
Data member Documentation is mandatory; its type is defined as 'typedef string TDocumentation'
Definition at line 250 of file Blast4_task_info_.hpp.
References CBlast4_task_info_Base::m_set_State.
Referenced by CBlast4_task_info_Base::CanGetDocumentation(), and CBlast4_task_info_Base::SetDocumentation().
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E-Value Check if a value has been assigned to E_value data member.
Data member E_value is mandatory; its type is defined as 'typedef double TE_value'
Definition at line 459 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::m_set_State.
Referenced by CBlast4_simple_alignment_Base::CanGetE_value(), and CBlast4_simple_alignment_Base::SetE_value().
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Check if a value has been assigned to End data member.
Data member End is optional; its type is defined as 'typedef int TEnd'
Definition at line 284 of file Blast4_range_.hpp.
References CBlast4_range_Base::m_set_State.
Referenced by CBlast4_range_Base::CanGetEnd(), and CBlast4_range_Base::SetEnd().
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Check if a value has been assigned to Errors data member.
Data member Errors is optional; its type is defined as 'typedef list< CRef< CBlast4_error > > TErrors'
Definition at line 236 of file Blast4_reply_.hpp.
References CBlast4_reply_Base::m_set_State.
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Check if a value has been assigned to Extended data member.
Data member Extended is optional; its type is defined as 'typedef CBlast4_parameters TExtended'
Definition at line 758 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::m_Extended.
Referenced by CBlast4_database_info_Base::CanGetExtended().
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Check if a value has been assigned to Format_options data member.
Data member Format_options is optional; its type is defined as 'typedef CBlast4_parameters TFormat_options'
Definition at line 702 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::m_Format_options.
Referenced by CBlast4_queue_search_request_Base::CanGetFormat_options().
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Check if a value has been assigned to Format_options data member.
Data member Format_options is optional; its type is defined as 'typedef CBlast4_parameters TFormat_options'
Definition at line 749 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::m_Format_options.
Referenced by CBlast4_get_request_info_reply_Base::CanGetFormat_options().
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Check if a value has been assigned to Frame data member.
Data member Frame is mandatory; its type is defined as 'typedef EBlast4_frame_type TFrame'
Definition at line 236 of file Blast4_mask_.hpp.
References CBlast4_mask_Base::m_set_State.
Referenced by CBlast4_mask_Base::CanGetFrame(), and CBlast4_mask_Base::SetFrame().
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Full query range covered by this HSP Check if a value has been assigned to Full_query_range data member.
Data member Full_query_range is mandatory; its type is defined as 'typedef CBlast4_range TFull_query_range'
Definition at line 647 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::m_Full_query_range.
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Full subject range covered by this HSP Check if a value has been assigned to Full_subject_range data member.
Data member Full_subject_range is mandatory; its type is defined as 'typedef CBlast4_range TFull_subject_range'
Definition at line 677 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::m_Full_subject_range.
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Check if a value has been assigned to Gapped data member.
Data member Gapped is mandatory; its type is defined as 'typedef bool TGapped'
Definition at line 415 of file Blast4_ka_block_.hpp.
References CBlast4_ka_block_Base::m_set_State.
Referenced by CBlast4_ka_block_Base::CanGetGapped(), and CBlast4_ka_block_Base::SetGapped().
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Check if a value has been assigned to H data member.
Data member H is mandatory; its type is defined as 'typedef double TH'
Definition at line 368 of file Blast4_ka_block_.hpp.
References CBlast4_ka_block_Base::m_set_State.
Referenced by CBlast4_ka_block_Base::CanGetH(), and CBlast4_ka_block_Base::SetH().
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Sequence identifier Check if a value has been assigned to Id data member.
Data member Id is mandatory; its type is defined as 'typedef CSeq_id TId'
Definition at line 203 of file Blast4_seq_part_data_.hpp.
References CBlast4_seq_part_data_Base::m_Id.
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Client identifier (email address, organization name, program/script name, or any other form of contacting the owner of this request) Check if a value has been assigned to Ident data member.
Data member Ident is optional; its type is defined as 'typedef string TIdent'
Definition at line 245 of file Blast4_request_.hpp.
References CBlast4_request_Base::m_set_State.
Referenced by CBlast4_request_Base::CanGetIdent(), and CBlast4_request_Base::SetIdent().
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Check if a value has been assigned to Info data member.
Data member Info is optional; its type is defined as 'typedef CBlast4_parameters TInfo'
Definition at line 250 of file Blast_get_searc_info_reply_.hpp.
References CBlast4_get_search_info_reply_Base::m_Info, and CRef< C, Locker >::NotEmpty().
Referenced by CBlast4_get_search_info_reply_Base::CanGetInfo().
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Check if a value has been assigned to Info data member.
Data member Info is optional; its type is defined as 'typedef CBlast4_parameters TInfo'
Definition at line 251 of file Blast_get_searc_info_reque_.hpp.
References CBlast4_get_search_info_request_Base::m_Info, and CRef< C, Locker >::NotEmpty().
Referenced by CBlast4_get_search_info_request_Base::CanGetInfo().
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Check if a value has been assigned to K data member.
Data member K is mandatory; its type is defined as 'typedef double TK'
Definition at line 321 of file Blast4_ka_block_.hpp.
References CBlast4_ka_block_Base::m_set_State.
Referenced by CBlast4_ka_block_Base::CanGetK(), and CBlast4_ka_block_Base::SetK().
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Check if a value has been assigned to Ka_blocks data member.
Data member Ka_blocks is optional; its type is defined as 'typedef list< CRef< CBlast4_ka_block > > TKa_blocks'
Definition at line 459 of file Blas_get_searc_resul_reply_.hpp.
References CBlast4_get_search_results_reply_Base::m_set_State.
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Check if a value has been assigned to Lambda data member.
Data member Lambda is mandatory; its type is defined as 'typedef double TLambda'
Definition at line 274 of file Blast4_ka_block_.hpp.
References CBlast4_ka_block_Base::m_set_State.
Referenced by CBlast4_ka_block_Base::CanGetLambda(), and CBlast4_ka_block_Base::SetLambda().
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Check if a value has been assigned to Last_updated data member.
Data member Last_updated is mandatory; its type is defined as 'typedef string TLast_updated'
Definition at line 523 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::m_set_State.
Referenced by CBlast4_database_info_Base::CanGetLast_updated(), and CBlast4_database_info_Base::SetLast_updated().
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Check if a value has been assigned to Locations data member.
Data member Locations is mandatory; its type is defined as 'typedef list< CRef< CSeq_loc > > TLocations'
Definition at line 211 of file Blast4_mask_.hpp.
References CBlast4_mask_Base::m_set_State.
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Masking locations for the query sequence(s).
Each element of this set corresponds to a single query's translation frame as appropriate. Check if a value has been assigned to Masks data member.
Data member Masks is optional; its type is defined as 'typedef list< CRef< CBlast4_mask > > TMasks'
Definition at line 434 of file Blas_get_searc_resul_reply_.hpp.
References CBlast4_get_search_results_reply_Base::m_set_State.
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Check if a value has been assigned to Message data member.
Data member Message is optional; its type is defined as 'typedef string TMessage'
Definition at line 287 of file Blast4_error_.hpp.
References CBlast4_error_Base::m_set_State.
Referenced by CBlast4_error_Base::CanGetMessage(), and CBlast4_error_Base::SetMessage().
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Check if a value has been assigned to Messages data member.
Data member Messages is optional; its type is defined as 'typedef list< CRef< CBlast4_error > > TMessages'
Definition at line 302 of file Blast4_archive_.hpp.
References CBlast4_archive_Base::m_set_State.
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Check if a value has been assigned to Name data member.
Data member Name is mandatory; its type is defined as 'typedef string TName'
Definition at line 200 of file Blast4_database_.hpp.
References CBlast4_database_Base::m_set_State.
Referenced by CBlast4_database_Base::CanGetName(), and CBlast4_database_Base::SetName().
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Check if a value has been assigned to Name data member.
Data member Name is mandatory; its type is defined as 'typedef string TName'
Definition at line 247 of file Blast4_matrix_id_.hpp.
References CBlast4_matrix_id_Base::m_set_State.
Referenced by CBlast4_matrix_id_Base::CanGetName(), and CBlast4_matrix_id_Base::SetName().
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Check if a value has been assigned to Name data member.
Data member Name is mandatory; its type is defined as 'typedef string TName'
Definition at line 203 of file Blast4_parameter_.hpp.
References CBlast4_parameter_Base::m_set_State.
Referenced by CBlast4_parameter_Base::CanGetName(), and CBlast4_parameter_Base::SetName().
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Check if a value has been assigned to Name data member.
Data member Name is mandatory; its type is defined as 'typedef string TName'
Definition at line 200 of file Blast4_parameter_info_.hpp.
References CBlast4_parameter_info_Base::m_set_State.
Referenced by CBlast4_parameter_info_Base::CanGetName(), and CBlast4_parameter_info_Base::SetName().
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Name of this task Check if a value has been assigned to Name data member.
Data member Name is mandatory; its type is defined as 'typedef string TName'
Definition at line 203 of file Blast4_task_info_.hpp.
References CBlast4_task_info_Base::m_set_State.
Referenced by CBlast4_task_info_Base::CanGetName(), and CBlast4_task_info_Base::SetName().
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Check if a value has been assigned to Num_alignments data member.
Data member Num_alignments is mandatory; its type is defined as 'typedef int TNum_alignments'
Definition at line 196 of file Blast4_phi_alignments_.hpp.
References CBlast4_phi_alignments_Base::m_set_State.
Referenced by CBlast4_phi_alignments_Base::CanGetNum_alignments(), and CBlast4_phi_alignments_Base::SetNum_alignments().
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Number of identities Check if a value has been assigned to Num_identities data member.
Data member Num_identities is optional; its type is defined as 'typedef int TNum_identities'
Definition at line 553 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::m_set_State.
Referenced by CBlast4_simple_alignment_Base::CanGetNum_identities(), and CBlast4_simple_alignment_Base::SetNum_identities().
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Number of insertions/deletions Check if a value has been assigned to Num_indels data member.
Data member Num_indels is optional; its type is defined as 'typedef int TNum_indels'
Definition at line 600 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::m_set_State.
Referenced by CBlast4_simple_alignment_Base::CanGetNum_indels(), and CBlast4_simple_alignment_Base::SetNum_indels().
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Check if a value has been assigned to Num_sequences data member.
Data member Num_sequences is mandatory; its type is defined as 'typedef Int8 TNum_sequences'
Definition at line 617 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::m_set_State.
Referenced by CBlast4_database_info_Base::CanGetNum_sequences(), and CBlast4_database_info_Base::SetNum_sequences().
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Check if a value has been assigned to Params data member.
Data member Params is optional; its type is defined as 'typedef CBlast4_parameters TParams'
Definition at line 427 of file Blast_finish_params_reques_.hpp.
References CBlast4_finish_params_request_Base::m_Params.
Referenced by CBlast4_finish_params_request_Base::CanGetParams().
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Check if a value has been assigned to Params data member.
Data member Params is optional; its type is defined as 'typedef CBlast4_parameters TParams'
Definition at line 158 of file Blast_get_databa_ex_reques_.hpp.
References CBlast4_get_databases_ex_request_Base::m_Params.
Referenced by CBlast4_get_databases_ex_request_Base::CanGetParams().
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This field contains a task description Check if a value has been assigned to Paramset data member.
Data member Paramset is optional; its type is defined as 'typedef string TParamset'
Definition at line 613 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::m_set_State.
Referenced by CBlast4_queue_search_request_Base::CanGetParamset(), and CBlast4_queue_search_request_Base::SetParamset().
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Check if a value has been assigned to Paramset data member.
Data member Paramset is optional; its type is defined as 'typedef string TParamset'
Definition at line 380 of file Blast_finish_params_reques_.hpp.
References CBlast4_finish_params_request_Base::m_set_State.
Referenced by CBlast4_finish_params_request_Base::CanGetParamset(), and CBlast4_finish_params_request_Base::SetParamset().
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Check if a value has been assigned to Phi_alignments data member.
Data member Phi_alignments is optional; its type is defined as 'typedef CBlast4_phi_alignments TPhi_alignments'
Definition at line 413 of file Blas_get_searc_resul_reply_.hpp.
References CBlast4_get_search_results_reply_Base::m_Phi_alignments.
Referenced by CBlast4_get_search_results_reply_Base::CanGetPhi_alignments().
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Check if a value has been assigned to Program data member.
Data member Program is mandatory; its type is defined as 'typedef string TProgram'
Definition at line 194 of file Blast4_program_info_.hpp.
References CBlast4_program_info_Base::m_set_State.
Referenced by CBlast4_program_info_Base::CanGetProgram(), and CBlast4_program_info_Base::SetProgram().
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Check if a value has been assigned to Program data member.
Data member Program is mandatory; its type is defined as 'typedef string TProgram'
Definition at line 459 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::m_set_State.
Referenced by CBlast4_queue_search_request_Base::CanGetProgram(), and CBlast4_queue_search_request_Base::SetProgram().
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Check if a value has been assigned to Program data member.
Data member Program is mandatory; its type is defined as 'typedef string TProgram'
Definition at line 286 of file Blast_finish_params_reques_.hpp.
References CBlast4_finish_params_request_Base::m_set_State.
Referenced by CBlast4_finish_params_request_Base::CanGetProgram(), and CBlast4_finish_params_request_Base::SetProgram().
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Check if a value has been assigned to Program data member.
Data member Program is mandatory; its type is defined as 'typedef string TProgram'
Definition at line 518 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::m_set_State.
Referenced by CBlast4_get_request_info_reply_Base::CanGetProgram(), and CBlast4_get_request_info_reply_Base::SetProgram().
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Check if a value has been assigned to Program_options data member.
Data member Program_options is optional; its type is defined as 'typedef CBlast4_parameters TProgram_options'
Definition at line 681 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::m_Program_options.
Referenced by CBlast4_queue_search_request_Base::CanGetProgram_options().
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Check if a value has been assigned to Program_options data member.
Data member Program_options is mandatory; its type is defined as 'typedef CBlast4_parameters TProgram_options'
Definition at line 719 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::m_Program_options.
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Check if a value has been assigned to Pssm data member.
Data member Pssm is optional; its type is defined as 'typedef CPssmWithParameters TPssm'
Definition at line 509 of file Blas_get_searc_resul_reply_.hpp.
References CBlast4_get_search_results_reply_Base::m_Pssm.
Referenced by CBlast4_get_search_results_reply_Base::CanGetPssm().
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Check if a value has been assigned to Queries data member.
Data member Queries is mandatory; its type is defined as 'typedef CBlast4_queries TQueries'
Definition at line 158 of file Blast4_get_queries_reply_.hpp.
References CBlast4_get_queries_reply_Base::m_Queries.
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Check if a value has been assigned to Queries data member.
Data member Queries is mandatory; its type is defined as 'typedef CBlast4_queries TQueries'
Definition at line 553 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::m_Queries.
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Check if a value has been assigned to Queries data member.
Data member Queries is mandatory; its type is defined as 'typedef CBlast4_queries TQueries'
Definition at line 659 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::m_Queries.
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Query sequence identifier (present if query is not a local id in the SeqAlign) Check if a value has been assigned to Query_id data member.
Data member Query_id is mandatory; its type is defined as 'typedef string TQuery_id'
Definition at line 202 of file Blast4_alignment_for_query_.hpp.
References CBlast4_alignments_for_query_Base::m_set_State.
Referenced by CBlast4_alignments_for_query_Base::CanGetQuery_id(), and CBlast4_alignments_for_query_Base::SetQuery_id().
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Query and options Check if a value has been assigned to Request data member.
Data member Request is mandatory; its type is defined as 'typedef CBlast4_request TRequest'
Definition at line 242 of file Blast4_archive_.hpp.
References CBlast4_archive_Base::m_Request.
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The request ID of the BLAST search Check if a value has been assigned to Request_id data member.
Data member Request_id is mandatory; its type is defined as 'typedef string TRequest_id'
Definition at line 201 of file Blas_get_searc_resul_reque_.hpp.
References CBlast4_get_search_results_request_Base::m_set_State.
Referenced by CBlast4_get_search_results_request_Base::CanGetRequest_id(), and CBlast4_get_search_results_request_Base::SetRequest_id().
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Check if a value has been assigned to Request_id data member.
Data member Request_id is mandatory; its type is defined as 'typedef string TRequest_id'
Definition at line 160 of file Blas_get_searc_statu_reque_.hpp.
References CBlast4_get_search_status_request_Base::m_set_State.
Referenced by CBlast4_get_search_status_request_Base::CanGetRequest_id(), and CBlast4_get_search_status_request_Base::SetRequest_id().
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Check if a value has been assigned to Request_id data member.
Data member Request_id is mandatory; its type is defined as 'typedef string TRequest_id'
Definition at line 160 of file Blas_get_searc_strat_reque_.hpp.
References CBlast4_get_search_strategy_request_Base::m_set_State.
Referenced by CBlast4_get_search_strategy_request_Base::CanGetRequest_id(), and CBlast4_get_search_strategy_request_Base::SetRequest_id().
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Check if a value has been assigned to Request_id data member.
Data member Request_id is optional; its type is defined as 'typedef string TRequest_id'
Definition at line 159 of file Blast4_queue_search_reply_.hpp.
References CBlast4_queue_search_reply_Base::m_set_State.
Referenced by CBlast4_queue_search_reply_Base::CanGetRequest_id(), and CBlast4_queue_search_reply_Base::SetRequest_id().
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Check if a value has been assigned to Request_id data member.
Data member Request_id is mandatory; its type is defined as 'typedef string TRequest_id'
Definition at line 160 of file Blast_get_reque_info_reque_.hpp.
References CBlast4_get_request_info_request_Base::m_set_State.
Referenced by CBlast4_get_request_info_request_Base::CanGetRequest_id(), and CBlast4_get_request_info_request_Base::SetRequest_id().
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Check if a value has been assigned to Request_id data member.
Data member Request_id is mandatory; its type is defined as 'typedef string TRequest_id'
Definition at line 203 of file Blast_get_searc_info_reply_.hpp.
References CBlast4_get_search_info_reply_Base::m_set_State.
Referenced by CBlast4_get_search_info_reply_Base::CanGetRequest_id(), and CBlast4_get_search_info_reply_Base::SetRequest_id().
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Check if a value has been assigned to Request_id data member.
Data member Request_id is mandatory; its type is defined as 'typedef string TRequest_id'
Definition at line 204 of file Blast_get_searc_info_reque_.hpp.
References CBlast4_get_search_info_request_Base::m_set_State.
Referenced by CBlast4_get_search_info_request_Base::CanGetRequest_id(), and CBlast4_get_search_info_request_Base::SetRequest_id().
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Check if a value has been assigned to Residue_type data member.
Data member Residue_type is mandatory; its type is defined as 'typedef EBlast4_residue_type TResidue_type'
Definition at line 200 of file Blast4_matrix_id_.hpp.
References CBlast4_matrix_id_Base::m_set_State.
Referenced by CBlast4_matrix_id_Base::CanGetResidue_type(), and CBlast4_matrix_id_Base::SetResidue_type().
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Logical OR of Blast4-result-types, assumes default if absent Check if a value has been assigned to Result_types data member.
Data member Result_types is optional; its type is defined as 'typedef int TResult_types'
Definition at line 248 of file Blas_get_searc_resul_reque_.hpp.
References CBlast4_get_search_results_request_Base::m_set_State.
Referenced by CBlast4_get_search_results_request_Base::CanGetResult_types(), and CBlast4_get_search_results_request_Base::SetResult_types().
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Results of search Check if a value has been assigned to Results data member.
Data member Results is mandatory; its type is defined as 'typedef CBlast4_get_search_results_reply TResults'
Definition at line 272 of file Blast4_archive_.hpp.
References CBlast4_archive_Base::m_Results.
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Check if a value has been assigned to Search_stats data member.
Data member Search_stats is optional; its type is defined as 'typedef list< string > TSearch_stats'
Definition at line 484 of file Blas_get_searc_resul_reply_.hpp.
References CBlast4_get_search_results_reply_Base::m_set_State.
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Sequence identifiers for the sequence to get Check if a value has been assigned to Seq_ids data member.
Data member Seq_ids is mandatory; its type is defined as 'typedef list< CRef< CSeq_id > > TSeq_ids'
Definition at line 318 of file Blast4_get_sequenc_request_.hpp.
References CBlast4_get_sequences_request_Base::m_set_State.
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Allows the specification of ranges of sequence data needed.
If the sequence(s) interval's end is 0, no data will be fetched. If end is past the length of the sequence, it will be adjusted to the end of the sequence (this allows fetching of the first chunk in cases where the length is not yet known). Check if a value has been assigned to Seq_locations data member.
Data member Seq_locations is mandatory; its type is defined as 'typedef list< CRef< CSeq_interval > > TSeq_locations'
Definition at line 234 of file Blast_get_seq_parts_reques_.hpp.
References CBlast4_get_seq_parts_request_Base::m_set_State.
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Check if a value has been assigned to Seq_locs data member.
Data member Seq_locs is mandatory; its type is defined as 'typedef list< CRef< CSeq_loc > > TSeq_locs'
Definition at line 243 of file Blast4_phi_alignments_.hpp.
References CBlast4_phi_alignments_Base::m_set_State.
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Check if a value has been assigned to Seqtech data member.
Data member Seqtech is mandatory; its type is defined as 'typedef int TSeqtech'
Definition at line 664 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::m_set_State.
Referenced by CBlast4_database_info_Base::CanGetSeqtech(), and CBlast4_database_info_Base::SetSeqtech().
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Check if a value has been assigned to Service data member.
Data member Service is mandatory; its type is defined as 'typedef string TService'
Definition at line 506 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::m_set_State.
Referenced by CBlast4_queue_search_request_Base::CanGetService(), and CBlast4_queue_search_request_Base::SetService().
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Check if a value has been assigned to Service data member.
Data member Service is mandatory; its type is defined as 'typedef string TService'
Definition at line 333 of file Blast_finish_params_reques_.hpp.
References CBlast4_finish_params_request_Base::m_set_State.
Referenced by CBlast4_finish_params_request_Base::CanGetService(), and CBlast4_finish_params_request_Base::SetService().
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Check if a value has been assigned to Service data member.
Data member Service is mandatory; its type is defined as 'typedef string TService'
Definition at line 565 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::m_set_State.
Referenced by CBlast4_get_request_info_reply_Base::CanGetService(), and CBlast4_get_request_info_reply_Base::SetService().
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Check if a value has been assigned to Services data member.
Data member Services is mandatory; its type is defined as 'typedef list< string > TServices'
Definition at line 241 of file Blast4_program_info_.hpp.
References CBlast4_program_info_Base::m_set_State.
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Check if a value has been assigned to Simple_results data member.
Data member Simple_results is optional; its type is defined as 'typedef CBlast4_simple_results TSimple_results'
Definition at line 530 of file Blas_get_searc_resul_reply_.hpp.
References CBlast4_get_search_results_reply_Base::m_Simple_results.
Referenced by CBlast4_get_search_results_reply_Base::CanGetSimple_results().
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Determines whether the returned Bioseqs should contain the sequence data or not Check if a value has been assigned to Skip_seq_data data member.
Data member Skip_seq_data is optional with default false; its type is defined as 'typedef bool TSkip_seq_data'
Definition at line 343 of file Blast4_get_sequenc_request_.hpp.
References CBlast4_get_sequences_request_Base::m_set_State.
Referenced by CBlast4_get_sequences_request_Base::SetSkip_seq_data().
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Check if a value has been assigned to Start data member.
Data member Start is optional; its type is defined as 'typedef int TStart'
Definition at line 237 of file Blast4_range_.hpp.
References CBlast4_range_Base::m_set_State.
Referenced by CBlast4_range_Base::CanGetStart(), and CBlast4_range_Base::SetStart().
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Check if a value has been assigned to Status data member.
Data member Status is mandatory; its type is defined as 'typedef string TStatus'
Definition at line 160 of file Blas_get_searc_statu_reply_.hpp.
References CBlast4_get_search_status_reply_Base::m_set_State.
Referenced by CBlast4_get_search_status_reply_Base::CanGetStatus(), and CBlast4_get_search_status_reply_Base::SetStatus().
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The frame of the range (absent for proteins; -1/1 for nucleotides; -1,-2,-3,1,2,3 for translated sequences) Check if a value has been assigned to Strand data member.
Data member Strand is optional; its type is defined as 'typedef int TStrand'
Definition at line 331 of file Blast4_range_.hpp.
References CBlast4_range_Base::m_set_State.
Referenced by CBlast4_range_Base::CanGetStrand(), and CBlast4_range_Base::SetStrand().
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Check if a value has been assigned to Subject data member.
Data member Subject is mandatory; its type is defined as 'typedef CBlast4_subject TSubject'
Definition at line 583 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::m_Subject.
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Subject sequence identifier (normally a GI from the SeqAlign) Check if a value has been assigned to Subject_id data member.
Data member Subject_id is mandatory; its type is defined as 'typedef string TSubject_id'
Definition at line 412 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::m_set_State.
Referenced by CBlast4_simple_alignment_Base::CanGetSubject_id(), and CBlast4_simple_alignment_Base::SetSubject_id().
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Check if a value has been assigned to Subjects data member.
Data member Subjects is optional; its type is defined as 'typedef CBlast4_subject TSubjects'
Definition at line 770 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::m_Subjects.
Referenced by CBlast4_get_request_info_reply_Base::CanGetSubjects().
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Determines whether or not the defline of the returned Bioseqs should contain only the requested seq id.
This optional field only applies to non-redundant BLAST database Check if a value has been assigned to Target_only data member.
Data member Target_only is optional; its type is defined as 'typedef bool TTarget_only'
Definition at line 393 of file Blast4_get_sequenc_request_.hpp.
References CBlast4_get_sequences_request_Base::m_set_State.
Referenced by CBlast4_get_sequences_request_Base::CanGetTarget_only(), and CBlast4_get_sequences_request_Base::SetTarget_only().
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Check if a value has been assigned to Taxid data member.
Data member Taxid is mandatory; its type is defined as 'typedef int TTaxid'
Definition at line 711 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::m_set_State.
Referenced by CBlast4_database_info_Base::CanGetTaxid(), and CBlast4_database_info_Base::SetTaxid().
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Check if a value has been assigned to Total_length data member.
Data member Total_length is mandatory; its type is defined as 'typedef Int8 TTotal_length'
Definition at line 570 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::m_set_State.
Referenced by CBlast4_database_info_Base::CanGetTotal_length(), and CBlast4_database_info_Base::SetTotal_length().
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Check if a value has been assigned to Type data member.
Data member Type is mandatory; its type is defined as 'typedef EBlast4_residue_type TType'
Definition at line 247 of file Blast4_database_.hpp.
References CBlast4_database_Base::m_set_State.
Referenced by CBlast4_database_Base::CanGetType(), and CBlast4_database_Base::SetType().
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Check if a value has been assigned to Type data member.
Data member Type is mandatory; its type is defined as 'typedef string TType'
Definition at line 247 of file Blast4_parameter_info_.hpp.
References CBlast4_parameter_info_Base::m_set_State.
Referenced by CBlast4_parameter_info_Base::CanGetType(), and CBlast4_parameter_info_Base::SetType().
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Check if a value has been assigned to Value data member.
Data member Value is mandatory; its type is defined as 'typedef CBlast4_value TValue'
Definition at line 250 of file Blast4_parameter_.hpp.
References CBlast4_parameter_Base::m_Value.
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Check if variant Strand_type is selected.
Strand_type type is defined as 'typedef EBlast4_strand_type TStrand_type'.
Definition at line 1080 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Strand_type, and CBlast4_value_Base::m_choice.
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Check if variant Strand_type_list is selected.
Strand_type_list type is defined as 'typedef list< EBlast4_strand_type > TStrand_type_list'.
Definition at line 1327 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Strand_type_list, and CBlast4_value_Base::m_choice.
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Check if variant String is selected.
String type is defined as 'typedef string TString'.
Definition at line 1107 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_String, and CBlast4_value_Base::m_choice.
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Check if variant String_list is selected.
String_list type is defined as 'typedef list< string > TString_list'.
Definition at line 1347 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_String_list, and CBlast4_value_Base::m_choice.
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Conversion operator to 'const Tdata' type.
Definition at line 173 of file Blas_get_windo_taxid_reply_.hpp.
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Conversion operator to 'const Tdata' type.
Definition at line 177 of file Blast4_get_databa_ex_reply_.hpp.
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Conversion operator to 'const Tdata' type.
Definition at line 177 of file Blast4_get_databases_reply_.hpp.
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Conversion operator to 'const Tdata' type.
Definition at line 177 of file Blast4_get_matrices_reply_.hpp.
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Conversion operator to 'const Tdata' type.
Definition at line 177 of file Blast4_get_parameter_reply_.hpp.
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Conversion operator to 'const Tdata' type.
Definition at line 180 of file Blast4_get_paramsets_reply_.hpp.
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Conversion operator to 'const Tdata' type.
Definition at line 177 of file Blast4_get_programs_reply_.hpp.
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Conversion operator to 'const Tdata' type.
Definition at line 177 of file Blast4_get_seq_parts_reply_.hpp.
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Conversion operator to 'const Tdata' type.
Definition at line 177 of file Blast4_get_sequences_reply_.hpp.
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Conversion operator to 'const Tdata' type.
Definition at line 177 of file Blast4_parameters_.hpp.
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Conversion operator to 'Tdata' type.
Definition at line 179 of file Blas_get_windo_taxid_reply_.hpp.
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Conversion operator to 'Tdata' type.
Definition at line 183 of file Blast4_get_databa_ex_reply_.hpp.
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Conversion operator to 'Tdata' type.
Definition at line 183 of file Blast4_get_databases_reply_.hpp.
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Conversion operator to 'Tdata' type.
Definition at line 183 of file Blast4_get_matrices_reply_.hpp.
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Conversion operator to 'Tdata' type.
Definition at line 183 of file Blast4_get_parameter_reply_.hpp.
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Conversion operator to 'Tdata' type.
Definition at line 186 of file Blast4_get_paramsets_reply_.hpp.
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Conversion operator to 'Tdata' type.
Definition at line 183 of file Blast4_get_programs_reply_.hpp.
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Conversion operator to 'Tdata' type.
Definition at line 183 of file Blast4_get_seq_parts_reply_.hpp.
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Conversion operator to 'Tdata' type.
Definition at line 183 of file Blast4_get_sequences_reply_.hpp.
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Conversion operator to 'Tdata' type.
Definition at line 183 of file Blast4_parameters_.hpp.
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Reset the whole object.
Definition at line 142 of file Blas_get_searc_resul_reply_.cpp.
References CBlast4_get_search_results_reply_Base::ResetAlignments(), CBlast4_get_search_results_reply_Base::ResetKa_blocks(), CBlast4_get_search_results_reply_Base::ResetMasks(), CBlast4_get_search_results_reply_Base::ResetPhi_alignments(), CBlast4_get_search_results_reply_Base::ResetPssm(), CBlast4_get_search_results_reply_Base::ResetSearch_stats(), and CBlast4_get_search_results_reply_Base::ResetSimple_results().
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Reset the whole object.
Definition at line 56 of file Blas_get_searc_resul_reque_.cpp.
References CBlast4_get_search_results_request_Base::ResetRequest_id(), and CBlast4_get_search_results_request_Base::ResetResult_types().
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Reset the whole object.
Definition at line 56 of file Blas_get_searc_statu_reply_.cpp.
References CBlast4_get_search_status_reply_Base::ResetStatus().
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Reset the whole object.
Definition at line 56 of file Blas_get_searc_statu_reque_.cpp.
References CBlast4_get_search_status_request_Base::ResetRequest_id().
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Reset the whole object.
Definition at line 56 of file Blas_get_searc_strat_reque_.cpp.
References CBlast4_get_search_strategy_request_Base::ResetRequest_id().
void CBlast4_get_windowmasked_taxids_reply_Base::Reset | ( | void | ) |
Reset data member.
Definition at line 50 of file Blas_get_windo_taxid_reply_.cpp.
References set< Key, Compare >::clear(), CBlast4_get_windowmasked_taxids_reply_Base::m_data, and CBlast4_get_windowmasked_taxids_reply_Base::m_set_State.
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Reset the whole object.
Definition at line 63 of file Blast4_alignment_for_query_.cpp.
References CBlast4_alignments_for_query_Base::ResetAlignments(), and CBlast4_alignments_for_query_Base::ResetQuery_id().
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Reset the whole object.
Definition at line 87 of file Blast4_archive_.cpp.
References CBlast4_archive_Base::ResetMessages(), CBlast4_archive_Base::ResetRequest(), and CBlast4_archive_Base::ResetResults().
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Reset the whole object.
Definition at line 50 of file Blast4_cutoff_.cpp.
References CBlast4_cutoff_Base::e_not_set, CBlast4_cutoff_Base::m_choice, and CBlast4_cutoff_Base::ResetSelection().
Referenced by CBlast4_cutoff_Base::~CBlast4_cutoff_Base().
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Reset the whole object.
Definition at line 56 of file Blast4_database_.cpp.
References CBlast4_database_Base::ResetName(), and CBlast4_database_Base::ResetType().
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Reset the whole object.
Definition at line 95 of file Blast4_database_info_.cpp.
References CBlast4_database_info_Base::ResetDatabase(), CBlast4_database_info_Base::ResetDescription(), CBlast4_database_info_Base::ResetExtended(), CBlast4_database_info_Base::ResetLast_updated(), CBlast4_database_info_Base::ResetNum_sequences(), CBlast4_database_info_Base::ResetSeqtech(), CBlast4_database_info_Base::ResetTaxid(), and CBlast4_database_info_Base::ResetTotal_length().
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Reset the whole object.
Definition at line 56 of file Blast4_error_.cpp.
References CBlast4_error_Base::ResetCode(), and CBlast4_error_Base::ResetMessage().
void CBlast4_get_databases_ex_reply_Base::Reset | ( | void | ) |
Reset data member.
Definition at line 51 of file Blast4_get_databa_ex_reply_.cpp.
References CBlast4_get_databases_ex_reply_Base::m_data, and CBlast4_get_databases_ex_reply_Base::m_set_State.
void CBlast4_get_databases_reply_Base::Reset | ( | void | ) |
Reset data member.
Definition at line 51 of file Blast4_get_databases_reply_.cpp.
References CBlast4_get_databases_reply_Base::m_data, and CBlast4_get_databases_reply_Base::m_set_State.
void CBlast4_get_matrices_reply_Base::Reset | ( | void | ) |
Reset data member.
Definition at line 51 of file Blast4_get_matrices_reply_.cpp.
References CBlast4_get_matrices_reply_Base::m_data, and CBlast4_get_matrices_reply_Base::m_set_State.
void CBlast4_get_parameters_reply_Base::Reset | ( | void | ) |
Reset data member.
Definition at line 51 of file Blast4_get_parameter_reply_.cpp.
References CBlast4_get_parameters_reply_Base::m_data, and CBlast4_get_parameters_reply_Base::m_set_State.
void CBlast4_get_paramsets_reply_Base::Reset | ( | void | ) |
Reset data member.
Definition at line 51 of file Blast4_get_paramsets_reply_.cpp.
References CBlast4_get_paramsets_reply_Base::m_data, and CBlast4_get_paramsets_reply_Base::m_set_State.
void CBlast4_get_programs_reply_Base::Reset | ( | void | ) |
Reset data member.
Definition at line 51 of file Blast4_get_programs_reply_.cpp.
References CBlast4_get_programs_reply_Base::m_data, and CBlast4_get_programs_reply_Base::m_set_State.
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Reset the whole object.
Definition at line 65 of file Blast4_get_queries_reply_.cpp.
References CBlast4_get_queries_reply_Base::ResetQueries().
void CBlast4_get_seq_parts_reply_Base::Reset | ( | void | ) |
Reset data member.
Definition at line 51 of file Blast4_get_seq_parts_reply_.cpp.
References CBlast4_get_seq_parts_reply_Base::m_data, and CBlast4_get_seq_parts_reply_Base::m_set_State.
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Reset the whole object.
Definition at line 72 of file Blast4_get_sequenc_request_.cpp.
References CBlast4_get_sequences_request_Base::ResetDatabase(), CBlast4_get_sequences_request_Base::ResetSeq_ids(), CBlast4_get_sequences_request_Base::ResetSkip_seq_data(), and CBlast4_get_sequences_request_Base::ResetTarget_only().
void CBlast4_get_sequences_reply_Base::Reset | ( | void | ) |
Reset data member.
Definition at line 51 of file Blast4_get_sequences_reply_.cpp.
References CBlast4_get_sequences_reply_Base::m_data, and CBlast4_get_sequences_reply_Base::m_set_State.
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Reset the whole object.
Definition at line 50 of file Blast4_ka_block_.cpp.
References CBlast4_ka_block_Base::ResetGapped(), CBlast4_ka_block_Base::ResetH(), CBlast4_ka_block_Base::ResetK(), and CBlast4_ka_block_Base::ResetLambda().
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Reset the whole object.
Definition at line 57 of file Blast4_mask_.cpp.
References CBlast4_mask_Base::ResetFrame(), and CBlast4_mask_Base::ResetLocations().
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Reset the whole object.
Definition at line 56 of file Blast4_matrix_id_.cpp.
References CBlast4_matrix_id_Base::ResetName(), and CBlast4_matrix_id_Base::ResetResidue_type().
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Reset the whole object.
Definition at line 71 of file Blast4_parameter_.cpp.
References CBlast4_parameter_Base::ResetName(), and CBlast4_parameter_Base::ResetValue().
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Reset the whole object.
Definition at line 62 of file Blast4_parameter_info_.cpp.
References CBlast4_parameter_info_Base::ResetName(), and CBlast4_parameter_info_Base::ResetType().
void CBlast4_parameters_Base::Reset | ( | void | ) |
Reset data member.
Definition at line 51 of file Blast4_parameters_.cpp.
References CBlast4_parameters_Base::m_data, and CBlast4_parameters_Base::m_set_State.
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Reset the whole object.
Definition at line 57 of file Blast4_phi_alignments_.cpp.
References CBlast4_phi_alignments_Base::ResetNum_alignments(), and CBlast4_phi_alignments_Base::ResetSeq_locs().
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Reset the whole object.
Definition at line 62 of file Blast4_program_info_.cpp.
References CBlast4_program_info_Base::ResetProgram(), and CBlast4_program_info_Base::ResetServices().
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Reset the whole object.
Definition at line 53 of file Blast4_queries_.cpp.
References CBlast4_queries_Base::e_not_set, CBlast4_queries_Base::m_choice, and CBlast4_queries_Base::ResetSelection().
Referenced by CBlast4_queries_Base::~CBlast4_queries_Base().
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Reset the whole object.
Definition at line 56 of file Blast4_queue_search_reply_.cpp.
References CBlast4_queue_search_reply_Base::ResetRequest_id().
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Reset the whole object.
Definition at line 150 of file Blast4_queue_search_reques_.cpp.
References CBlast4_queue_search_request_Base::ResetAlgorithm_options(), CBlast4_queue_search_request_Base::ResetFormat_options(), CBlast4_queue_search_request_Base::ResetParamset(), CBlast4_queue_search_request_Base::ResetProgram(), CBlast4_queue_search_request_Base::ResetProgram_options(), CBlast4_queue_search_request_Base::ResetQueries(), CBlast4_queue_search_request_Base::ResetService(), and CBlast4_queue_search_request_Base::ResetSubject().
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Reset the whole object.
Definition at line 50 of file Blast4_range_.cpp.
References CBlast4_range_Base::ResetEnd(), CBlast4_range_Base::ResetStart(), and CBlast4_range_Base::ResetStrand().
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Reset the whole object.
Definition at line 72 of file Blast4_reply_.cpp.
References CBlast4_reply_Base::ResetBody(), and CBlast4_reply_Base::ResetErrors().
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Reset the whole object.
Definition at line 66 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::e_not_set, CBlast4_reply_body_Base::m_choice, and CBlast4_reply_body_Base::ResetSelection().
Referenced by CBlast4_reply_body_Base::~CBlast4_reply_body_Base().
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Reset the whole object.
Definition at line 71 of file Blast4_request_.cpp.
References CBlast4_request_Base::ResetBody(), and CBlast4_request_Base::ResetIdent().
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Reset the whole object.
Definition at line 59 of file Blast4_request_body_.cpp.
References CBlast4_request_body_Base::e_not_set, CBlast4_request_body_Base::m_choice, and CBlast4_request_body_Base::ResetSelection().
Referenced by CBlast4_request_body_Base::~CBlast4_request_body_Base().
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Reset the whole object.
Definition at line 80 of file Blast4_seq_part_data_.cpp.
References CBlast4_seq_part_data_Base::ResetData(), and CBlast4_seq_part_data_Base::ResetId().
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Reset the whole object.
Definition at line 85 of file Blast4_simple_alignment_.cpp.
References CBlast4_simple_alignment_Base::ResetBit_score(), CBlast4_simple_alignment_Base::ResetE_value(), CBlast4_simple_alignment_Base::ResetFull_query_range(), CBlast4_simple_alignment_Base::ResetFull_subject_range(), CBlast4_simple_alignment_Base::ResetNum_identities(), CBlast4_simple_alignment_Base::ResetNum_indels(), and CBlast4_simple_alignment_Base::ResetSubject_id().
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Reset the whole object.
Definition at line 57 of file Blast4_simple_results_.cpp.
References CBlast4_simple_results_Base::ResetAll_alignments().
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Reset the whole object.
Definition at line 52 of file Blast4_subject_.cpp.
References CBlast4_subject_Base::e_not_set, CBlast4_subject_Base::m_choice, and CBlast4_subject_Base::ResetSelection().
Referenced by CBlast4_subject_Base::~CBlast4_subject_Base().
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Reset the whole object.
Definition at line 62 of file Blast4_task_info_.cpp.
References CBlast4_task_info_Base::ResetDocumentation(), and CBlast4_task_info_Base::ResetName().
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Reset the whole object.
Definition at line 59 of file Blast4_value_.cpp.
References CBlast4_value_Base::e_not_set, CBlast4_value_Base::m_choice, and CBlast4_value_Base::ResetSelection().
Referenced by CBlast4_value_Base::~CBlast4_value_Base().
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Reset the whole object.
Definition at line 86 of file Blast_finish_params_reques_.cpp.
References CBlast4_finish_params_request_Base::ResetParams(), CBlast4_finish_params_request_Base::ResetParamset(), CBlast4_finish_params_request_Base::ResetProgram(), and CBlast4_finish_params_request_Base::ResetService().
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Reset the whole object.
Definition at line 68 of file Blast_get_databa_ex_reques_.cpp.
References CBlast4_get_databases_ex_request_Base::ResetParams().
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Reset the whole object.
Definition at line 162 of file Blast_get_reque_info_reply_.cpp.
References CBlast4_get_request_info_reply_Base::ResetAlgorithm_options(), CBlast4_get_request_info_reply_Base::ResetCreated_by(), CBlast4_get_request_info_reply_Base::ResetDatabase(), CBlast4_get_request_info_reply_Base::ResetFormat_options(), CBlast4_get_request_info_reply_Base::ResetProgram(), CBlast4_get_request_info_reply_Base::ResetProgram_options(), CBlast4_get_request_info_reply_Base::ResetQueries(), CBlast4_get_request_info_reply_Base::ResetService(), and CBlast4_get_request_info_reply_Base::ResetSubjects().
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Reset the whole object.
Definition at line 56 of file Blast_get_reque_info_reque_.cpp.
References CBlast4_get_request_info_request_Base::ResetRequest_id().
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Reset the whole object.
Definition at line 74 of file Blast_get_searc_info_reply_.cpp.
References CBlast4_get_search_info_reply_Base::ResetInfo(), and CBlast4_get_search_info_reply_Base::ResetRequest_id().
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Reset the whole object.
Definition at line 74 of file Blast_get_searc_info_reque_.cpp.
References CBlast4_get_search_info_request_Base::ResetInfo(), and CBlast4_get_search_info_request_Base::ResetRequest_id().
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Reset the whole object.
Definition at line 72 of file Blast_get_seq_parts_reques_.cpp.
References CBlast4_get_seq_parts_request_Base::ResetDatabase(), and CBlast4_get_seq_parts_request_Base::ResetSeq_locations().
void CBlast4_queue_search_request_Base::ResetAlgorithm_options | ( | void | ) |
Reset Algorithm_options data member.
Definition at line 99 of file Blast4_queue_search_reques_.cpp.
References CBlast4_queue_search_request_Base::m_Algorithm_options.
Referenced by CBlast4_queue_search_request_Base::Reset().
void CBlast4_get_request_info_reply_Base::ResetAlgorithm_options | ( | void | ) |
Reset Algorithm_options data member.
Definition at line 100 of file Blast_get_reque_info_reply_.cpp.
References CBlast4_get_request_info_reply_Base::m_Algorithm_options.
Referenced by CBlast4_get_request_info_reply_Base::CBlast4_get_request_info_reply_Base(), CBlast4_get_request_info_reply_Base::GetAlgorithm_options(), CBlast4_get_request_info_reply_Base::Reset(), and CBlast4_get_request_info_reply_Base::SetAlgorithm_options().
void CBlast4_get_search_results_reply_Base::ResetAlignments | ( | void | ) |
Reset Alignments data member.
Definition at line 56 of file Blas_get_searc_resul_reply_.cpp.
References CBlast4_get_search_results_reply_Base::m_Alignments.
Referenced by CBlast4_get_search_results_reply_Base::Reset().
void CBlast4_alignments_for_query_Base::ResetAlignments | ( | void | ) |
Reset Alignments data member.
Definition at line 57 of file Blast4_alignment_for_query_.cpp.
References CBlast4_alignments_for_query_Base::m_Alignments, and CBlast4_alignments_for_query_Base::m_set_State.
Referenced by CBlast4_alignments_for_query_Base::Reset().
void CBlast4_simple_results_Base::ResetAll_alignments | ( | void | ) |
Reset All_alignments data member.
Definition at line 51 of file Blast4_simple_results_.cpp.
References CBlast4_simple_results_Base::m_All_alignments, and CBlast4_simple_results_Base::m_set_State.
Referenced by CBlast4_simple_results_Base::Reset().
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Reset Bit_score data member.
Definition at line 518 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::m_Bit_score, and CBlast4_simple_alignment_Base::m_set_State.
Referenced by CBlast4_simple_alignment_Base::Reset().
void CBlast4_reply_Base::ResetBody | ( | void | ) |
Reset Body data member.
Definition at line 58 of file Blast4_reply_.cpp.
References CBlast4_reply_Base::m_Body.
Referenced by CBlast4_reply_Base::CBlast4_reply_Base(), CBlast4_reply_Base::GetBody(), CBlast4_reply_Base::Reset(), and CBlast4_reply_Base::SetBody().
void CBlast4_request_Base::ResetBody | ( | void | ) |
Reset Body data member.
Definition at line 57 of file Blast4_request_.cpp.
References CBlast4_request_Base::m_Body.
Referenced by CBlast4_request_Base::CBlast4_request_Base(), CBlast4_request_Base::GetBody(), CBlast4_request_Base::Reset(), and CBlast4_request_Base::SetBody().
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Reset Code data member.
Definition at line 252 of file Blast4_error_.hpp.
References CBlast4_error_Base::m_Code, and CBlast4_error_Base::m_set_State.
Referenced by CBlast4_error_Base::Reset().
void CBlast4_get_request_info_reply_Base::ResetCreated_by | ( | void | ) |
Reset Created_by data member.
Definition at line 80 of file Blast_get_reque_info_reply_.cpp.
References CBlast4_get_request_info_reply_Base::m_Created_by, and CBlast4_get_request_info_reply_Base::m_set_State.
Referenced by CBlast4_get_request_info_reply_Base::Reset().
void CBlast4_seq_part_data_Base::ResetData | ( | void | ) |
Reset Data data member.
Definition at line 66 of file Blast4_seq_part_data_.cpp.
References CBlast4_seq_part_data_Base::m_Data, and CRef< C, Locker >::Reset().
Referenced by CBlast4_seq_part_data_Base::CBlast4_seq_part_data_Base(), CBlast4_seq_part_data_Base::GetData(), CBlast4_seq_part_data_Base::Reset(), and CBlast4_seq_part_data_Base::SetData().
void CBlast4_database_info_Base::ResetDatabase | ( | void | ) |
Reset Database data member.
Definition at line 52 of file Blast4_database_info_.cpp.
References CBlast4_database_info_Base::m_Database.
Referenced by CBlast4_database_info_Base::CBlast4_database_info_Base(), CBlast4_database_info_Base::GetDatabase(), CBlast4_database_info_Base::Reset(), and CBlast4_database_info_Base::SetDatabase().
void CBlast4_get_sequences_request_Base::ResetDatabase | ( | void | ) |
Reset Database data member.
Definition at line 52 of file Blast4_get_sequenc_request_.cpp.
References CBlast4_get_sequences_request_Base::m_Database.
Referenced by CBlast4_get_sequences_request_Base::CBlast4_get_sequences_request_Base(), CBlast4_get_sequences_request_Base::GetDatabase(), CBlast4_get_sequences_request_Base::Reset(), and CBlast4_get_sequences_request_Base::SetDatabase().
void CBlast4_get_request_info_reply_Base::ResetDatabase | ( | void | ) |
Reset Database data member.
Definition at line 54 of file Blast_get_reque_info_reply_.cpp.
References CBlast4_get_request_info_reply_Base::m_Database.
Referenced by CBlast4_get_request_info_reply_Base::CBlast4_get_request_info_reply_Base(), CBlast4_get_request_info_reply_Base::GetDatabase(), CBlast4_get_request_info_reply_Base::Reset(), and CBlast4_get_request_info_reply_Base::SetDatabase().
void CBlast4_get_seq_parts_request_Base::ResetDatabase | ( | void | ) |
Reset Database data member.
Definition at line 52 of file Blast_get_seq_parts_reques_.cpp.
References CBlast4_get_seq_parts_request_Base::m_Database.
Referenced by CBlast4_get_seq_parts_request_Base::CBlast4_get_seq_parts_request_Base(), CBlast4_get_seq_parts_request_Base::GetDatabase(), CBlast4_get_seq_parts_request_Base::Reset(), and CBlast4_get_seq_parts_request_Base::SetDatabase().
void CBlast4_database_info_Base::ResetDescription | ( | void | ) |
Reset Description data member.
Definition at line 66 of file Blast4_database_info_.cpp.
References CBlast4_database_info_Base::m_Description, and CBlast4_database_info_Base::m_set_State.
Referenced by CBlast4_database_info_Base::Reset().
void CBlast4_task_info_Base::ResetDocumentation | ( | void | ) |
Reset Documentation data member.
Definition at line 56 of file Blast4_task_info_.cpp.
References CBlast4_task_info_Base::m_Documentation, and CBlast4_task_info_Base::m_set_State.
Referenced by CBlast4_task_info_Base::Reset().
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Reset E_value data member.
Definition at line 471 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::m_E_value, and CBlast4_simple_alignment_Base::m_set_State.
Referenced by CBlast4_simple_alignment_Base::Reset().
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Reset End data member.
Definition at line 296 of file Blast4_range_.hpp.
References CBlast4_range_Base::m_End, and CBlast4_range_Base::m_set_State.
Referenced by CBlast4_range_Base::Reset().
void CBlast4_reply_Base::ResetErrors | ( | void | ) |
Reset Errors data member.
Definition at line 52 of file Blast4_reply_.cpp.
References CBlast4_reply_Base::m_Errors, and CBlast4_reply_Base::m_set_State.
Referenced by CBlast4_reply_Base::Reset().
void CBlast4_database_info_Base::ResetExtended | ( | void | ) |
Reset Extended data member.
Definition at line 78 of file Blast4_database_info_.cpp.
References CBlast4_database_info_Base::m_Extended.
Referenced by CBlast4_database_info_Base::Reset().
void CBlast4_queue_search_request_Base::ResetFormat_options | ( | void | ) |
Reset Format_options data member.
Definition at line 133 of file Blast4_queue_search_reques_.cpp.
References CBlast4_queue_search_request_Base::m_Format_options.
Referenced by CBlast4_queue_search_request_Base::Reset().
void CBlast4_get_request_info_reply_Base::ResetFormat_options | ( | void | ) |
Reset Format_options data member.
Definition at line 128 of file Blast_get_reque_info_reply_.cpp.
References CBlast4_get_request_info_reply_Base::m_Format_options.
Referenced by CBlast4_get_request_info_reply_Base::Reset().
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Reset Frame data member.
Definition at line 248 of file Blast4_mask_.hpp.
References CBlast4_mask_Base::m_Frame, and CBlast4_mask_Base::m_set_State.
Referenced by CBlast4_mask_Base::Reset().
void CBlast4_simple_alignment_Base::ResetFull_query_range | ( | void | ) |
Reset Full_query_range data member.
Definition at line 57 of file Blast4_simple_alignment_.cpp.
References CBlast4_simple_alignment_Base::m_Full_query_range.
Referenced by CBlast4_simple_alignment_Base::CBlast4_simple_alignment_Base(), CBlast4_simple_alignment_Base::GetFull_query_range(), CBlast4_simple_alignment_Base::Reset(), and CBlast4_simple_alignment_Base::SetFull_query_range().
void CBlast4_simple_alignment_Base::ResetFull_subject_range | ( | void | ) |
Reset Full_subject_range data member.
Definition at line 71 of file Blast4_simple_alignment_.cpp.
References CBlast4_simple_alignment_Base::m_Full_subject_range.
Referenced by CBlast4_simple_alignment_Base::CBlast4_simple_alignment_Base(), CBlast4_simple_alignment_Base::GetFull_subject_range(), CBlast4_simple_alignment_Base::Reset(), and CBlast4_simple_alignment_Base::SetFull_subject_range().
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Reset Gapped data member.
Definition at line 427 of file Blast4_ka_block_.hpp.
References CBlast4_ka_block_Base::m_Gapped, and CBlast4_ka_block_Base::m_set_State.
Referenced by CBlast4_ka_block_Base::Reset().
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Reset H data member.
Definition at line 380 of file Blast4_ka_block_.hpp.
References CBlast4_ka_block_Base::m_H, and CBlast4_ka_block_Base::m_set_State.
Referenced by CBlast4_ka_block_Base::Reset().
void CBlast4_seq_part_data_Base::ResetId | ( | void | ) |
Reset Id data member.
Definition at line 52 of file Blast4_seq_part_data_.cpp.
References CBlast4_seq_part_data_Base::m_Id.
Referenced by CBlast4_seq_part_data_Base::CBlast4_seq_part_data_Base(), CBlast4_seq_part_data_Base::GetId(), CBlast4_seq_part_data_Base::Reset(), and CBlast4_seq_part_data_Base::SetId().
void CBlast4_request_Base::ResetIdent | ( | void | ) |
Reset Ident data member.
Definition at line 51 of file Blast4_request_.cpp.
References CBlast4_request_Base::m_Ident, and CBlast4_request_Base::m_set_State.
Referenced by CBlast4_request_Base::Reset().
void CBlast4_get_search_info_reply_Base::ResetInfo | ( | void | ) |
Reset Info data member.
Definition at line 57 of file Blast_get_searc_info_reply_.cpp.
References CBlast4_get_search_info_reply_Base::m_Info, and CRef< C, Locker >::Reset().
Referenced by CBlast4_get_search_info_reply_Base::Reset().
void CBlast4_get_search_info_request_Base::ResetInfo | ( | void | ) |
Reset Info data member.
Definition at line 57 of file Blast_get_searc_info_reque_.cpp.
References CBlast4_get_search_info_request_Base::m_Info, and CRef< C, Locker >::Reset().
Referenced by CBlast4_get_search_info_request_Base::Reset().
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Reset K data member.
Definition at line 333 of file Blast4_ka_block_.hpp.
References CBlast4_ka_block_Base::m_K, and CBlast4_ka_block_Base::m_set_State.
Referenced by CBlast4_ka_block_Base::Reset().
void CBlast4_get_search_results_reply_Base::ResetKa_blocks | ( | void | ) |
Reset Ka_blocks data member.
Definition at line 96 of file Blas_get_searc_resul_reply_.cpp.
References CBlast4_get_search_results_reply_Base::m_Ka_blocks, and CBlast4_get_search_results_reply_Base::m_set_State.
Referenced by CBlast4_get_search_results_reply_Base::Reset().
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Reset Lambda data member.
Definition at line 286 of file Blast4_ka_block_.hpp.
References CBlast4_ka_block_Base::m_Lambda, and CBlast4_ka_block_Base::m_set_State.
Referenced by CBlast4_ka_block_Base::Reset().
void CBlast4_database_info_Base::ResetLast_updated | ( | void | ) |
Reset Last_updated data member.
Definition at line 72 of file Blast4_database_info_.cpp.
References CBlast4_database_info_Base::m_Last_updated, and CBlast4_database_info_Base::m_set_State.
Referenced by CBlast4_database_info_Base::Reset().
void CBlast4_mask_Base::ResetLocations | ( | void | ) |
Reset Locations data member.
Definition at line 51 of file Blast4_mask_.cpp.
References CBlast4_mask_Base::m_Locations, and CBlast4_mask_Base::m_set_State.
Referenced by CBlast4_mask_Base::Reset().
void CBlast4_get_search_results_reply_Base::ResetMasks | ( | void | ) |
Reset Masks data member.
Definition at line 90 of file Blas_get_searc_resul_reply_.cpp.
References CBlast4_get_search_results_reply_Base::m_Masks, and CBlast4_get_search_results_reply_Base::m_set_State.
Referenced by CBlast4_get_search_results_reply_Base::Reset().
void CBlast4_error_Base::ResetMessage | ( | void | ) |
Reset Message data member.
Definition at line 50 of file Blast4_error_.cpp.
References CBlast4_error_Base::m_Message, and CBlast4_error_Base::m_set_State.
Referenced by CBlast4_error_Base::Reset().
void CBlast4_archive_Base::ResetMessages | ( | void | ) |
Reset Messages data member.
Definition at line 81 of file Blast4_archive_.cpp.
References CBlast4_archive_Base::m_Messages, and CBlast4_archive_Base::m_set_State.
Referenced by CBlast4_archive_Base::Reset().
void CBlast4_database_Base::ResetName | ( | void | ) |
Reset Name data member.
Definition at line 50 of file Blast4_database_.cpp.
References CBlast4_database_Base::m_Name, and CBlast4_database_Base::m_set_State.
Referenced by CBlast4_database_Base::Reset().
void CBlast4_matrix_id_Base::ResetName | ( | void | ) |
Reset Name data member.
Definition at line 50 of file Blast4_matrix_id_.cpp.
References CBlast4_matrix_id_Base::m_Name, and CBlast4_matrix_id_Base::m_set_State.
Referenced by CBlast4_matrix_id_Base::Reset().
void CBlast4_parameter_Base::ResetName | ( | void | ) |
Reset Name data member.
Definition at line 51 of file Blast4_parameter_.cpp.
References CBlast4_parameter_Base::m_Name, and CBlast4_parameter_Base::m_set_State.
Referenced by CBlast4_parameter_Base::Reset().
void CBlast4_parameter_info_Base::ResetName | ( | void | ) |
Reset Name data member.
Definition at line 50 of file Blast4_parameter_info_.cpp.
References CBlast4_parameter_info_Base::m_Name, and CBlast4_parameter_info_Base::m_set_State.
Referenced by CBlast4_parameter_info_Base::Reset().
void CBlast4_task_info_Base::ResetName | ( | void | ) |
Reset Name data member.
Definition at line 50 of file Blast4_task_info_.cpp.
References CBlast4_task_info_Base::m_Name, and CBlast4_task_info_Base::m_set_State.
Referenced by CBlast4_task_info_Base::Reset().
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Reset Num_alignments data member.
Definition at line 208 of file Blast4_phi_alignments_.hpp.
References CBlast4_phi_alignments_Base::m_Num_alignments, and CBlast4_phi_alignments_Base::m_set_State.
Referenced by CBlast4_phi_alignments_Base::Reset().
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Reset Num_identities data member.
Definition at line 565 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::m_Num_identities, and CBlast4_simple_alignment_Base::m_set_State.
Referenced by CBlast4_simple_alignment_Base::Reset().
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Reset Num_indels data member.
Definition at line 612 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::m_Num_indels, and CBlast4_simple_alignment_Base::m_set_State.
Referenced by CBlast4_simple_alignment_Base::Reset().
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Reset Num_sequences data member.
Definition at line 629 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::m_Num_sequences, and CBlast4_database_info_Base::m_set_State.
Referenced by CBlast4_database_info_Base::Reset().
void CBlast4_finish_params_request_Base::ResetParams | ( | void | ) |
Reset Params data member.
Definition at line 69 of file Blast_finish_params_reques_.cpp.
References CBlast4_finish_params_request_Base::m_Params.
Referenced by CBlast4_finish_params_request_Base::Reset().
void CBlast4_get_databases_ex_request_Base::ResetParams | ( | void | ) |
Reset Params data member.
Definition at line 51 of file Blast_get_databa_ex_reques_.cpp.
References CBlast4_get_databases_ex_request_Base::m_Params.
Referenced by CBlast4_get_databases_ex_request_Base::Reset().
void CBlast4_queue_search_request_Base::ResetParamset | ( | void | ) |
Reset Paramset data member.
Definition at line 93 of file Blast4_queue_search_reques_.cpp.
References CBlast4_queue_search_request_Base::m_Paramset, and CBlast4_queue_search_request_Base::m_set_State.
Referenced by CBlast4_queue_search_request_Base::Reset().
void CBlast4_finish_params_request_Base::ResetParamset | ( | void | ) |
Reset Paramset data member.
Definition at line 63 of file Blast_finish_params_reques_.cpp.
References CBlast4_finish_params_request_Base::m_Paramset, and CBlast4_finish_params_request_Base::m_set_State.
Referenced by CBlast4_finish_params_request_Base::Reset().
void CBlast4_get_search_results_reply_Base::ResetPhi_alignments | ( | void | ) |
Reset Phi_alignments data member.
Definition at line 73 of file Blas_get_searc_resul_reply_.cpp.
References CBlast4_get_search_results_reply_Base::m_Phi_alignments.
Referenced by CBlast4_get_search_results_reply_Base::Reset().
void CBlast4_program_info_Base::ResetProgram | ( | void | ) |
Reset Program data member.
Definition at line 50 of file Blast4_program_info_.cpp.
References CBlast4_program_info_Base::m_Program, and CBlast4_program_info_Base::m_set_State.
Referenced by CBlast4_program_info_Base::Reset().
void CBlast4_queue_search_request_Base::ResetProgram | ( | void | ) |
Reset Program data member.
Definition at line 53 of file Blast4_queue_search_reques_.cpp.
References CBlast4_queue_search_request_Base::m_Program, and CBlast4_queue_search_request_Base::m_set_State.
Referenced by CBlast4_queue_search_request_Base::Reset().
void CBlast4_finish_params_request_Base::ResetProgram | ( | void | ) |
Reset Program data member.
Definition at line 51 of file Blast_finish_params_reques_.cpp.
References CBlast4_finish_params_request_Base::m_Program, and CBlast4_finish_params_request_Base::m_set_State.
Referenced by CBlast4_finish_params_request_Base::Reset().
void CBlast4_get_request_info_reply_Base::ResetProgram | ( | void | ) |
Reset Program data member.
Definition at line 68 of file Blast_get_reque_info_reply_.cpp.
References CBlast4_get_request_info_reply_Base::m_Program, and CBlast4_get_request_info_reply_Base::m_set_State.
Referenced by CBlast4_get_request_info_reply_Base::Reset().
void CBlast4_queue_search_request_Base::ResetProgram_options | ( | void | ) |
Reset Program_options data member.
Definition at line 116 of file Blast4_queue_search_reques_.cpp.
References CBlast4_queue_search_request_Base::m_Program_options.
Referenced by CBlast4_queue_search_request_Base::Reset().
void CBlast4_get_request_info_reply_Base::ResetProgram_options | ( | void | ) |
Reset Program_options data member.
Definition at line 114 of file Blast_get_reque_info_reply_.cpp.
References CBlast4_get_request_info_reply_Base::m_Program_options.
Referenced by CBlast4_get_request_info_reply_Base::CBlast4_get_request_info_reply_Base(), CBlast4_get_request_info_reply_Base::GetProgram_options(), CBlast4_get_request_info_reply_Base::Reset(), and CBlast4_get_request_info_reply_Base::SetProgram_options().
void CBlast4_get_search_results_reply_Base::ResetPssm | ( | void | ) |
Reset Pssm data member.
Definition at line 108 of file Blas_get_searc_resul_reply_.cpp.
References CBlast4_get_search_results_reply_Base::m_Pssm.
Referenced by CBlast4_get_search_results_reply_Base::Reset().
void CBlast4_get_queries_reply_Base::ResetQueries | ( | void | ) |
Reset Queries data member.
Definition at line 51 of file Blast4_get_queries_reply_.cpp.
References CBlast4_get_queries_reply_Base::m_Queries.
Referenced by CBlast4_get_queries_reply_Base::CBlast4_get_queries_reply_Base(), CBlast4_get_queries_reply_Base::GetQueries(), CBlast4_get_queries_reply_Base::Reset(), and CBlast4_get_queries_reply_Base::SetQueries().
void CBlast4_queue_search_request_Base::ResetQueries | ( | void | ) |
Reset Queries data member.
Definition at line 65 of file Blast4_queue_search_reques_.cpp.
References CBlast4_queue_search_request_Base::m_Queries.
Referenced by CBlast4_queue_search_request_Base::CBlast4_queue_search_request_Base(), CBlast4_queue_search_request_Base::GetQueries(), CBlast4_queue_search_request_Base::Reset(), and CBlast4_queue_search_request_Base::SetQueries().
void CBlast4_get_request_info_reply_Base::ResetQueries | ( | void | ) |
Reset Queries data member.
Definition at line 86 of file Blast_get_reque_info_reply_.cpp.
References CBlast4_get_request_info_reply_Base::m_Queries.
Referenced by CBlast4_get_request_info_reply_Base::CBlast4_get_request_info_reply_Base(), CBlast4_get_request_info_reply_Base::GetQueries(), CBlast4_get_request_info_reply_Base::Reset(), and CBlast4_get_request_info_reply_Base::SetQueries().
void CBlast4_alignments_for_query_Base::ResetQuery_id | ( | void | ) |
Reset Query_id data member.
Definition at line 51 of file Blast4_alignment_for_query_.cpp.
References CBlast4_alignments_for_query_Base::m_Query_id, and CBlast4_alignments_for_query_Base::m_set_State.
Referenced by CBlast4_alignments_for_query_Base::Reset().
void CBlast4_archive_Base::ResetRequest | ( | void | ) |
Reset Request data member.
Definition at line 53 of file Blast4_archive_.cpp.
References CBlast4_archive_Base::m_Request.
Referenced by CBlast4_archive_Base::CBlast4_archive_Base(), CBlast4_archive_Base::GetRequest(), CBlast4_archive_Base::Reset(), and CBlast4_archive_Base::SetRequest().
void CBlast4_get_search_results_request_Base::ResetRequest_id | ( | void | ) |
Reset Request_id data member.
Definition at line 50 of file Blas_get_searc_resul_reque_.cpp.
References CBlast4_get_search_results_request_Base::m_Request_id, and CBlast4_get_search_results_request_Base::m_set_State.
Referenced by CBlast4_get_search_results_request_Base::Reset().
void CBlast4_get_search_status_request_Base::ResetRequest_id | ( | void | ) |
Reset Request_id data member.
Definition at line 50 of file Blas_get_searc_statu_reque_.cpp.
References CBlast4_get_search_status_request_Base::m_Request_id, and CBlast4_get_search_status_request_Base::m_set_State.
Referenced by CBlast4_get_search_status_request_Base::Reset().
void CBlast4_get_search_strategy_request_Base::ResetRequest_id | ( | void | ) |
Reset Request_id data member.
Definition at line 50 of file Blas_get_searc_strat_reque_.cpp.
References CBlast4_get_search_strategy_request_Base::m_Request_id, and CBlast4_get_search_strategy_request_Base::m_set_State.
Referenced by CBlast4_get_search_strategy_request_Base::Reset().
void CBlast4_queue_search_reply_Base::ResetRequest_id | ( | void | ) |
Reset Request_id data member.
Definition at line 50 of file Blast4_queue_search_reply_.cpp.
References CBlast4_queue_search_reply_Base::m_Request_id, and CBlast4_queue_search_reply_Base::m_set_State.
Referenced by CBlast4_queue_search_reply_Base::Reset().
void CBlast4_get_request_info_request_Base::ResetRequest_id | ( | void | ) |
Reset Request_id data member.
Definition at line 50 of file Blast_get_reque_info_reque_.cpp.
References CBlast4_get_request_info_request_Base::m_Request_id, and CBlast4_get_request_info_request_Base::m_set_State.
Referenced by CBlast4_get_request_info_request_Base::Reset().
void CBlast4_get_search_info_reply_Base::ResetRequest_id | ( | void | ) |
Reset Request_id data member.
Definition at line 51 of file Blast_get_searc_info_reply_.cpp.
References CBlast4_get_search_info_reply_Base::m_Request_id, and CBlast4_get_search_info_reply_Base::m_set_State.
Referenced by CBlast4_get_search_info_reply_Base::Reset().
void CBlast4_get_search_info_request_Base::ResetRequest_id | ( | void | ) |
Reset Request_id data member.
Definition at line 51 of file Blast_get_searc_info_reque_.cpp.
References CBlast4_get_search_info_request_Base::m_Request_id, and CBlast4_get_search_info_request_Base::m_set_State.
Referenced by CBlast4_get_search_info_request_Base::Reset().
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Reset Residue_type data member.
Definition at line 212 of file Blast4_matrix_id_.hpp.
References CBlast4_matrix_id_Base::m_Residue_type, and CBlast4_matrix_id_Base::m_set_State.
Referenced by CBlast4_matrix_id_Base::Reset().
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Reset Result_types data member.
Definition at line 260 of file Blas_get_searc_resul_reque_.hpp.
References CBlast4_get_search_results_request_Base::m_Result_types, and CBlast4_get_search_results_request_Base::m_set_State.
Referenced by CBlast4_get_search_results_request_Base::Reset().
void CBlast4_archive_Base::ResetResults | ( | void | ) |
Reset Results data member.
Definition at line 67 of file Blast4_archive_.cpp.
References CBlast4_archive_Base::m_Results.
Referenced by CBlast4_archive_Base::CBlast4_archive_Base(), CBlast4_archive_Base::GetResults(), CBlast4_archive_Base::Reset(), and CBlast4_archive_Base::SetResults().
void CBlast4_get_search_results_reply_Base::ResetSearch_stats | ( | void | ) |
Reset Search_stats data member.
Definition at line 102 of file Blas_get_searc_resul_reply_.cpp.
References CBlast4_get_search_results_reply_Base::m_Search_stats, and CBlast4_get_search_results_reply_Base::m_set_State.
Referenced by CBlast4_get_search_results_reply_Base::Reset().
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Reset the selection (set it to e_not_set).
Definition at line 56 of file Blast4_cutoff_.cpp.
References CBlast4_cutoff_Base::e_not_set, and CBlast4_cutoff_Base::m_choice.
Referenced by CBlast4_cutoff_Base::Reset().
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Reset the selection (set it to e_not_set).
Definition at line 59 of file Blast4_queries_.cpp.
References CBlast4_queries_Base::e_Bioseq_set, CBlast4_queries_Base::e_not_set, CBlast4_queries_Base::e_Pssm, CBlast4_queries_Base::e_Seq_loc_list, CBlast4_queries_Base::m_choice, CBlast4_queries_Base::m_object, and CBlast4_queries_Base::m_Seq_loc_list.
Referenced by CBlast4_queries_Base::Reset(), CBlast4_queries_Base::SetBioseq_set(), and CBlast4_queries_Base::SetPssm().
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Reset the selection (set it to e_not_set).
Definition at line 72 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::e_Finish_params, CBlast4_reply_body_Base::e_Get_databases, CBlast4_reply_body_Base::e_Get_databases_ex, CBlast4_reply_body_Base::e_Get_matrices, CBlast4_reply_body_Base::e_Get_parameters, CBlast4_reply_body_Base::e_Get_paramsets, CBlast4_reply_body_Base::e_Get_programs, CBlast4_reply_body_Base::e_Get_protocol_info, CBlast4_reply_body_Base::e_Get_queries, CBlast4_reply_body_Base::e_Get_request_info, CBlast4_reply_body_Base::e_Get_search_info, CBlast4_reply_body_Base::e_Get_search_results, CBlast4_reply_body_Base::e_Get_sequence_parts, CBlast4_reply_body_Base::e_Get_sequences, CBlast4_reply_body_Base::e_Get_windowmasked_taxids, CBlast4_reply_body_Base::e_not_set, CBlast4_reply_body_Base::e_Queue_search, CBlast4_reply_body_Base::m_choice, and CBlast4_reply_body_Base::m_object.
Referenced by CBlast4_reply_body_Base::Reset(), CBlast4_reply_body_Base::SetFinish_params(), CBlast4_reply_body_Base::SetGet_databases(), CBlast4_reply_body_Base::SetGet_databases_ex(), CBlast4_reply_body_Base::SetGet_matrices(), CBlast4_reply_body_Base::SetGet_parameters(), CBlast4_reply_body_Base::SetGet_paramsets(), CBlast4_reply_body_Base::SetGet_programs(), CBlast4_reply_body_Base::SetGet_protocol_info(), CBlast4_reply_body_Base::SetGet_queries(), CBlast4_reply_body_Base::SetGet_request_info(), CBlast4_reply_body_Base::SetGet_search_info(), CBlast4_reply_body_Base::SetGet_search_results(), CBlast4_reply_body_Base::SetGet_sequence_parts(), CBlast4_reply_body_Base::SetGet_sequences(), CBlast4_reply_body_Base::SetGet_windowmasked_taxids(), and CBlast4_reply_body_Base::SetQueue_search().
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Reset the selection (set it to e_not_set).
Definition at line 65 of file Blast4_request_body_.cpp.
References CBlast4_request_body_Base::e_Finish_params, CBlast4_request_body_Base::e_Get_databases_ex, CBlast4_request_body_Base::e_Get_protocol_info, CBlast4_request_body_Base::e_Get_request_info, CBlast4_request_body_Base::e_Get_search_info, CBlast4_request_body_Base::e_Get_search_results, CBlast4_request_body_Base::e_Get_sequence_parts, CBlast4_request_body_Base::e_Get_sequences, CBlast4_request_body_Base::e_not_set, CBlast4_request_body_Base::e_Queue_search, CBlast4_request_body_Base::m_choice, and CBlast4_request_body_Base::m_object.
Referenced by CBlast4_request_body_Base::Reset(), CBlast4_request_body_Base::SetFinish_params(), CBlast4_request_body_Base::SetGet_databases_ex(), CBlast4_request_body_Base::SetGet_protocol_info(), CBlast4_request_body_Base::SetGet_request_info(), CBlast4_request_body_Base::SetGet_search_info(), CBlast4_request_body_Base::SetGet_search_results(), CBlast4_request_body_Base::SetGet_sequence_parts(), CBlast4_request_body_Base::SetGet_sequences(), and CBlast4_request_body_Base::SetQueue_search().
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Reset the selection (set it to e_not_set).
Definition at line 58 of file Blast4_subject_.cpp.
References CBlast4_subject_Base::e_Database, CBlast4_subject_Base::e_not_set, CBlast4_subject_Base::e_Seq_loc_list, CBlast4_subject_Base::e_Sequences, CBlast4_subject_Base::m_choice, CBlast4_subject_Base::m_Seq_loc_list, CBlast4_subject_Base::m_Sequences, and CBlast4_subject_Base::m_string.
Referenced by CBlast4_subject_Base::Reset().
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Reset the selection (set it to e_not_set).
Definition at line 65 of file Blast4_value_.cpp.
References CBlast4_value_Base::e_Big_integer_list, CBlast4_value_Base::e_Bioseq, CBlast4_value_Base::e_Bioseq_list, CBlast4_value_Base::e_Bioseq_set, CBlast4_value_Base::e_Boolean_list, CBlast4_value_Base::e_Cutoff, CBlast4_value_Base::e_Cutoff_list, CBlast4_value_Base::e_Integer_list, CBlast4_value_Base::e_Matrix, CBlast4_value_Base::e_Matrix_list, CBlast4_value_Base::e_not_set, CBlast4_value_Base::e_Query_mask, CBlast4_value_Base::e_Real_list, CBlast4_value_Base::e_Seq_align, CBlast4_value_Base::e_Seq_align_list, CBlast4_value_Base::e_Seq_align_set, CBlast4_value_Base::e_Seq_id, CBlast4_value_Base::e_Seq_id_list, CBlast4_value_Base::e_Seq_loc, CBlast4_value_Base::e_Seq_loc_list, CBlast4_value_Base::e_Strand_type_list, CBlast4_value_Base::e_String, CBlast4_value_Base::e_String_list, CBlast4_value_Base::m_Big_integer_list, CBlast4_value_Base::m_Bioseq_list, CBlast4_value_Base::m_Boolean_list, CBlast4_value_Base::m_choice, CBlast4_value_Base::m_Cutoff_list, CBlast4_value_Base::m_Integer_list, CBlast4_value_Base::m_Matrix_list, CBlast4_value_Base::m_object, CBlast4_value_Base::m_Real_list, CBlast4_value_Base::m_Seq_align_list, CBlast4_value_Base::m_Seq_id_list, CBlast4_value_Base::m_Seq_loc_list, CBlast4_value_Base::m_Strand_type_list, CBlast4_value_Base::m_string, and CBlast4_value_Base::m_String_list.
Referenced by CBlast4_value_Base::Reset(), CBlast4_value_Base::SetBioseq(), CBlast4_value_Base::SetBioseq_set(), CBlast4_value_Base::SetCutoff(), CBlast4_value_Base::SetMatrix(), CBlast4_value_Base::SetQuery_mask(), CBlast4_value_Base::SetSeq_align(), CBlast4_value_Base::SetSeq_align_set(), CBlast4_value_Base::SetSeq_id(), and CBlast4_value_Base::SetSeq_loc().
void CBlast4_get_sequences_request_Base::ResetSeq_ids | ( | void | ) |
Reset Seq_ids data member.
Definition at line 66 of file Blast4_get_sequenc_request_.cpp.
References CBlast4_get_sequences_request_Base::m_Seq_ids, and CBlast4_get_sequences_request_Base::m_set_State.
Referenced by CBlast4_get_sequences_request_Base::Reset().
void CBlast4_get_seq_parts_request_Base::ResetSeq_locations | ( | void | ) |
Reset Seq_locations data member.
Definition at line 66 of file Blast_get_seq_parts_reques_.cpp.
References CBlast4_get_seq_parts_request_Base::m_Seq_locations, and CBlast4_get_seq_parts_request_Base::m_set_State.
Referenced by CBlast4_get_seq_parts_request_Base::Reset().
void CBlast4_phi_alignments_Base::ResetSeq_locs | ( | void | ) |
Reset Seq_locs data member.
Definition at line 51 of file Blast4_phi_alignments_.cpp.
References CBlast4_phi_alignments_Base::m_Seq_locs, and CBlast4_phi_alignments_Base::m_set_State.
Referenced by CBlast4_phi_alignments_Base::Reset().
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Reset Seqtech data member.
Definition at line 676 of file Blast4_database_info_.hpp.
References int, CBlast4_database_info_Base::m_Seqtech, and CBlast4_database_info_Base::m_set_State.
Referenced by CBlast4_database_info_Base::Reset().
void CBlast4_queue_search_request_Base::ResetService | ( | void | ) |
Reset Service data member.
Definition at line 59 of file Blast4_queue_search_reques_.cpp.
References CBlast4_queue_search_request_Base::m_Service, and CBlast4_queue_search_request_Base::m_set_State.
Referenced by CBlast4_queue_search_request_Base::Reset().
void CBlast4_finish_params_request_Base::ResetService | ( | void | ) |
Reset Service data member.
Definition at line 57 of file Blast_finish_params_reques_.cpp.
References CBlast4_finish_params_request_Base::m_Service, and CBlast4_finish_params_request_Base::m_set_State.
Referenced by CBlast4_finish_params_request_Base::Reset().
void CBlast4_get_request_info_reply_Base::ResetService | ( | void | ) |
Reset Service data member.
Definition at line 74 of file Blast_get_reque_info_reply_.cpp.
References CBlast4_get_request_info_reply_Base::m_Service, and CBlast4_get_request_info_reply_Base::m_set_State.
Referenced by CBlast4_get_request_info_reply_Base::Reset().
void CBlast4_program_info_Base::ResetServices | ( | void | ) |
Reset Services data member.
Definition at line 56 of file Blast4_program_info_.cpp.
References CBlast4_program_info_Base::m_Services, and CBlast4_program_info_Base::m_set_State.
Referenced by CBlast4_program_info_Base::Reset().
void CBlast4_get_search_results_reply_Base::ResetSimple_results | ( | void | ) |
Reset Simple_results data member.
Definition at line 125 of file Blas_get_searc_resul_reply_.cpp.
References CBlast4_get_search_results_reply_Base::m_Simple_results.
Referenced by CBlast4_get_search_results_reply_Base::Reset().
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Reset Skip_seq_data data member.
Definition at line 355 of file Blast4_get_sequenc_request_.hpp.
References CBlast4_get_sequences_request_Base::m_set_State, and CBlast4_get_sequences_request_Base::m_Skip_seq_data.
Referenced by CBlast4_get_sequences_request_Base::Reset(), and CBlast4_get_sequences_request_Base::SetDefaultSkip_seq_data().
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Reset Start data member.
Definition at line 249 of file Blast4_range_.hpp.
References CBlast4_range_Base::m_set_State, and CBlast4_range_Base::m_Start.
Referenced by CBlast4_range_Base::Reset().
void CBlast4_get_search_status_reply_Base::ResetStatus | ( | void | ) |
Reset Status data member.
Definition at line 50 of file Blas_get_searc_statu_reply_.cpp.
References CBlast4_get_search_status_reply_Base::m_set_State, and CBlast4_get_search_status_reply_Base::m_Status.
Referenced by CBlast4_get_search_status_reply_Base::Reset().
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Reset Strand data member.
Definition at line 343 of file Blast4_range_.hpp.
References CBlast4_range_Base::m_set_State, and CBlast4_range_Base::m_Strand.
Referenced by CBlast4_range_Base::Reset().
void CBlast4_queue_search_request_Base::ResetSubject | ( | void | ) |
Reset Subject data member.
Definition at line 79 of file Blast4_queue_search_reques_.cpp.
References CBlast4_queue_search_request_Base::m_Subject.
Referenced by CBlast4_queue_search_request_Base::CBlast4_queue_search_request_Base(), CBlast4_queue_search_request_Base::GetSubject(), CBlast4_queue_search_request_Base::Reset(), and CBlast4_queue_search_request_Base::SetSubject().
void CBlast4_simple_alignment_Base::ResetSubject_id | ( | void | ) |
Reset Subject_id data member.
Definition at line 51 of file Blast4_simple_alignment_.cpp.
References CBlast4_simple_alignment_Base::m_set_State, and CBlast4_simple_alignment_Base::m_Subject_id.
Referenced by CBlast4_simple_alignment_Base::Reset().
void CBlast4_get_request_info_reply_Base::ResetSubjects | ( | void | ) |
Reset Subjects data member.
Definition at line 145 of file Blast_get_reque_info_reply_.cpp.
References CBlast4_get_request_info_reply_Base::m_Subjects.
Referenced by CBlast4_get_request_info_reply_Base::Reset().
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Reset Target_only data member.
Definition at line 405 of file Blast4_get_sequenc_request_.hpp.
References CBlast4_get_sequences_request_Base::m_set_State, and CBlast4_get_sequences_request_Base::m_Target_only.
Referenced by CBlast4_get_sequences_request_Base::Reset().
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Reset Taxid data member.
Definition at line 723 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::m_set_State, and CBlast4_database_info_Base::m_Taxid.
Referenced by CBlast4_database_info_Base::Reset().
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Reset Total_length data member.
Definition at line 582 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::m_set_State, and CBlast4_database_info_Base::m_Total_length.
Referenced by CBlast4_database_info_Base::Reset().
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Reset Type data member.
Definition at line 259 of file Blast4_database_.hpp.
References CBlast4_database_Base::m_set_State, and CBlast4_database_Base::m_Type.
Referenced by CBlast4_database_Base::Reset().
void CBlast4_parameter_info_Base::ResetType | ( | void | ) |
Reset Type data member.
Definition at line 56 of file Blast4_parameter_info_.cpp.
References CBlast4_parameter_info_Base::m_set_State, and CBlast4_parameter_info_Base::m_Type.
Referenced by CBlast4_parameter_info_Base::Reset().
void CBlast4_parameter_Base::ResetValue | ( | void | ) |
Reset Value data member.
Definition at line 57 of file Blast4_parameter_.cpp.
References CBlast4_parameter_Base::m_Value.
Referenced by CBlast4_parameter_Base::CBlast4_parameter_Base(), CBlast4_parameter_Base::GetValue(), CBlast4_parameter_Base::Reset(), and CBlast4_parameter_Base::SetValue().
void CBlast4_cutoff_Base::Select | ( | E_Choice | index, |
EResetVariant | reset, | ||
CObjectMemoryPool * | pool | ||
) |
Select the requested variant if needed, allocating CObject variants from memory pool.
void CBlast4_queries_Base::Select | ( | E_Choice | index, |
EResetVariant | reset, | ||
CObjectMemoryPool * | pool | ||
) |
Select the requested variant if needed, allocating CObject variants from memory pool.
void CBlast4_reply_body_Base::Select | ( | E_Choice | index, |
EResetVariant | reset, | ||
CObjectMemoryPool * | pool | ||
) |
Select the requested variant if needed, allocating CObject variants from memory pool.
void CBlast4_request_body_Base::Select | ( | E_Choice | index, |
EResetVariant | reset, | ||
CObjectMemoryPool * | pool | ||
) |
Select the requested variant if needed, allocating CObject variants from memory pool.
void CBlast4_subject_Base::Select | ( | E_Choice | index, |
EResetVariant | reset, | ||
CObjectMemoryPool * | pool | ||
) |
Select the requested variant if needed, allocating CObject variants from memory pool.
void CBlast4_value_Base::Select | ( | E_Choice | index, |
EResetVariant | reset, | ||
CObjectMemoryPool * | pool | ||
) |
Select the requested variant if needed, allocating CObject variants from memory pool.
void CBlast4_cutoff_Base::Select | ( | E_Choice | index, |
EResetVariant | reset = eDoResetVariant |
||
) |
Select the requested variant if needed.
index | New selection state. |
reset | Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant. |
Referenced by CBlast4_cutoff_Base::SetE_value(), and CBlast4_cutoff_Base::SetRaw_score().
void CBlast4_queries_Base::Select | ( | E_Choice | index, |
EResetVariant | reset = eDoResetVariant |
||
) |
Select the requested variant if needed.
index | New selection state. |
reset | Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant. |
Referenced by CBlast4_queries_Base::SetBioseq_set(), CBlast4_queries_Base::SetPssm(), and CBlast4_queries_Base::SetSeq_loc_list().
void CBlast4_reply_body_Base::Select | ( | E_Choice | index, |
EResetVariant | reset = eDoResetVariant |
||
) |
Select the requested variant if needed.
index | New selection state. |
reset | Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant. |
Referenced by CBlast4_reply_body_Base::SetFinish_params(), CBlast4_reply_body_Base::SetGet_databases(), CBlast4_reply_body_Base::SetGet_databases_ex(), CBlast4_reply_body_Base::SetGet_matrices(), CBlast4_reply_body_Base::SetGet_parameters(), CBlast4_reply_body_Base::SetGet_paramsets(), CBlast4_reply_body_Base::SetGet_programs(), CBlast4_reply_body_Base::SetGet_protocol_info(), CBlast4_reply_body_Base::SetGet_queries(), CBlast4_reply_body_Base::SetGet_request_info(), CBlast4_reply_body_Base::SetGet_search_info(), CBlast4_reply_body_Base::SetGet_search_results(), CBlast4_reply_body_Base::SetGet_sequence_parts(), CBlast4_reply_body_Base::SetGet_sequences(), CBlast4_reply_body_Base::SetGet_windowmasked_taxids(), and CBlast4_reply_body_Base::SetQueue_search().
void CBlast4_request_body_Base::Select | ( | E_Choice | index, |
EResetVariant | reset = eDoResetVariant |
||
) |
Select the requested variant if needed.
index | New selection state. |
reset | Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant. |
Referenced by CBlast4_request_body_Base::SetFinish_params(), CBlast4_request_body_Base::SetGet_databases(), CBlast4_request_body_Base::SetGet_databases_ex(), CBlast4_request_body_Base::SetGet_matrices(), CBlast4_request_body_Base::SetGet_parameters(), CBlast4_request_body_Base::SetGet_paramsets(), CBlast4_request_body_Base::SetGet_programs(), CBlast4_request_body_Base::SetGet_protocol_info(), CBlast4_request_body_Base::SetGet_request_info(), CBlast4_request_body_Base::SetGet_search_info(), CBlast4_request_body_Base::SetGet_search_results(), CBlast4_request_body_Base::SetGet_sequence_parts(), CBlast4_request_body_Base::SetGet_sequences(), CBlast4_request_body_Base::SetGet_windowmasked_taxids(), and CBlast4_request_body_Base::SetQueue_search().
void CBlast4_subject_Base::Select | ( | E_Choice | index, |
EResetVariant | reset = eDoResetVariant |
||
) |
Select the requested variant if needed.
index | New selection state. |
reset | Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant. |
Referenced by CBlast4_subject_Base::SetDatabase(), CBlast4_subject_Base::SetSeq_loc_list(), and CBlast4_subject_Base::SetSequences().
void CBlast4_value_Base::Select | ( | E_Choice | index, |
EResetVariant | reset = eDoResetVariant |
||
) |
Select the requested variant if needed.
index | New selection state. |
reset | Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant. |
Referenced by CBlast4_value_Base::SetBig_integer(), CBlast4_value_Base::SetBig_integer_list(), CBlast4_value_Base::SetBioseq(), CBlast4_value_Base::SetBioseq_list(), CBlast4_value_Base::SetBioseq_set(), CBlast4_value_Base::SetBoolean(), CBlast4_value_Base::SetBoolean_list(), CBlast4_value_Base::SetCutoff(), CBlast4_value_Base::SetCutoff_list(), CBlast4_value_Base::SetInteger(), CBlast4_value_Base::SetInteger_list(), CBlast4_value_Base::SetMatrix(), CBlast4_value_Base::SetMatrix_list(), CBlast4_value_Base::SetQuery_mask(), CBlast4_value_Base::SetReal(), CBlast4_value_Base::SetReal_list(), CBlast4_value_Base::SetSeq_align(), CBlast4_value_Base::SetSeq_align_list(), CBlast4_value_Base::SetSeq_align_set(), CBlast4_value_Base::SetSeq_id(), CBlast4_value_Base::SetSeq_id_list(), CBlast4_value_Base::SetSeq_loc(), CBlast4_value_Base::SetSeq_loc_list(), CBlast4_value_Base::SetStrand_type(), CBlast4_value_Base::SetStrand_type_list(), CBlast4_value_Base::SetString(), and CBlast4_value_Base::SetString_list().
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Retrieve selection name (for diagnostic purposes).
index | One of possible selection states. |
Definition at line 82 of file Blast4_cutoff_.cpp.
References CBlast4_cutoff_Base::sm_SelectionNames.
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static |
Retrieve selection name (for diagnostic purposes).
index | One of possible selection states. |
Definition at line 100 of file Blast4_queries_.cpp.
References CBlast4_queries_Base::sm_SelectionNames.
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static |
Retrieve selection name (for diagnostic purposes).
index | One of possible selection states. |
Definition at line 176 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::sm_SelectionNames.
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static |
Retrieve selection name (for diagnostic purposes).
index | One of possible selection states. |
Definition at line 140 of file Blast4_request_body_.cpp.
References CBlast4_request_body_Base::sm_SelectionNames.
|
static |
Retrieve selection name (for diagnostic purposes).
index | One of possible selection states. |
Definition at line 101 of file Blast4_subject_.cpp.
References CBlast4_subject_Base::sm_SelectionNames.
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static |
Retrieve selection name (for diagnostic purposes).
index | One of possible selection states. |
Definition at line 245 of file Blast4_value_.cpp.
References CBlast4_value_Base::sm_SelectionNames.
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Definition at line 109 of file Blas_get_searc_strat_reply_.hpp.
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Assign a value to data member.
Definition at line 166 of file Blas_get_windo_taxid_reply_.hpp.
References CBlast4_get_windowmasked_taxids_reply_Base::m_data, and CBlast4_get_windowmasked_taxids_reply_Base::m_set_State.
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Definition at line 107 of file Blast4_finish_params_reply_.hpp.
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Assign a value to data member.
Definition at line 170 of file Blast4_get_databa_ex_reply_.hpp.
References CBlast4_get_databases_ex_reply_Base::m_data, and CBlast4_get_databases_ex_reply_Base::m_set_State.
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Assign a value to data member.
Definition at line 170 of file Blast4_get_databases_reply_.hpp.
References CBlast4_get_databases_reply_Base::m_data, and CBlast4_get_databases_reply_Base::m_set_State.
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Assign a value to data member.
Definition at line 170 of file Blast4_get_matrices_reply_.hpp.
References CBlast4_get_matrices_reply_Base::m_data, and CBlast4_get_matrices_reply_Base::m_set_State.
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Assign a value to data member.
Definition at line 170 of file Blast4_get_parameter_reply_.hpp.
References CBlast4_get_parameters_reply_Base::m_data, and CBlast4_get_parameters_reply_Base::m_set_State.
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Assign a value to data member.
Definition at line 173 of file Blast4_get_paramsets_reply_.hpp.
References CBlast4_get_paramsets_reply_Base::m_data, and CBlast4_get_paramsets_reply_Base::m_set_State.
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Assign a value to data member.
Definition at line 170 of file Blast4_get_programs_reply_.hpp.
References CBlast4_get_programs_reply_Base::m_data, and CBlast4_get_programs_reply_Base::m_set_State.
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Assign a value to data member.
Definition at line 170 of file Blast4_get_seq_parts_reply_.hpp.
References CBlast4_get_seq_parts_reply_Base::m_data, and CBlast4_get_seq_parts_reply_Base::m_set_State.
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Assign a value to data member.
Definition at line 170 of file Blast4_get_sequences_reply_.hpp.
References CBlast4_get_sequences_reply_Base::m_data, and CBlast4_get_sequences_reply_Base::m_set_State.
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Assign a value to data member.
Definition at line 170 of file Blast4_parameters_.hpp.
References CBlast4_parameters_Base::m_data, and CBlast4_parameters_Base::m_set_State.
Referenced by CBlast4_parameters::Add().
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Definition at line 107 of file Blast_get_proto_info_reply_.hpp.
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inline |
Definition at line 108 of file Blast_get_proto_info_reque_.hpp.
void CBlast4_queue_search_request_Base::SetAlgorithm_options | ( | CBlast4_queue_search_request_Base::TAlgorithm_options & | value | ) |
Assign a value to Algorithm_options data member.
value | Reference to value. |
Definition at line 104 of file Blast4_queue_search_reques_.cpp.
References CBlast4_queue_search_request_Base::m_Algorithm_options, and value.
Referenced by CImportStrategy::GetAlgoOptions(), and CExportStrategy::x_Process_BlastOptions().
void CBlast4_get_request_info_reply_Base::SetAlgorithm_options | ( | CBlast4_get_request_info_reply_Base::TAlgorithm_options & | value | ) |
Assign a value to Algorithm_options data member.
value | Reference to value. |
Definition at line 109 of file Blast_get_reque_info_reply_.cpp.
References CBlast4_get_request_info_reply_Base::m_Algorithm_options, and value.
CBlast4_queue_search_request_Base::TAlgorithm_options & CBlast4_queue_search_request_Base::SetAlgorithm_options | ( | void | ) |
Assign a value to Algorithm_options data member.
Definition at line 109 of file Blast4_queue_search_reques_.cpp.
References CBlast4_queue_search_request_Base::m_Algorithm_options.
|
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Assign a value to Algorithm_options data member.
Definition at line 710 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::m_Algorithm_options, and CBlast4_get_request_info_reply_Base::ResetAlgorithm_options().
void CBlast4_get_search_results_reply_Base::SetAlignments | ( | CBlast4_get_search_results_reply_Base::TAlignments & | value | ) |
Assign a value to Alignments data member.
value | Reference to value. |
Definition at line 61 of file Blas_get_searc_resul_reply_.cpp.
References CBlast4_get_search_results_reply_Base::m_Alignments, and value.
CBlast4_get_search_results_reply_Base::TAlignments & CBlast4_get_search_results_reply_Base::SetAlignments | ( | void | ) |
Assign a value to Alignments data member.
Definition at line 66 of file Blas_get_searc_resul_reply_.cpp.
References CBlast4_get_search_results_reply_Base::m_Alignments.
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Assign a value to Alignments data member.
Definition at line 267 of file Blast4_alignment_for_query_.hpp.
References CBlast4_alignments_for_query_Base::m_Alignments, and CBlast4_alignments_for_query_Base::m_set_State.
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Assign a value to All_alignments data member.
Definition at line 176 of file Blast4_simple_results_.hpp.
References CBlast4_simple_results_Base::m_All_alignments, and CBlast4_simple_results_Base::m_set_State.
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Select the variant and set its data.
value | Variant data. |
Definition at line 956 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Big_integer, eDoNotResetVariant, CBlast4_value_Base::m_Big_integer, CBlast4_value_Base::Select(), and value.
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Select the variant.
Definition at line 949 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Big_integer, eDoNotResetVariant, CBlast4_value_Base::m_Big_integer, and CBlast4_value_Base::Select().
Referenced by CBlast4_parameters::Add().
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Select the variant.
Definition at line 1140 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Big_integer_list, eDoNotResetVariant, CBlast4_value_Base::m_Big_integer_list, and CBlast4_value_Base::Select().
Referenced by CExportStrategy::x_AddParameterToProgramOptions(), and CRemoteBlast::x_SetOneParam().
void CBlast4_value_Base::SetBioseq | ( | CBlast4_value_Base::TBioseq & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 267 of file Blast4_value_.cpp.
References CObject::AddReference(), CBlast4_value_Base::e_Bioseq, CBlast4_value_Base::m_choice, CBlast4_value_Base::m_object, CBlast4_value_Base::ResetSelection(), and value.
CBlast4_value_Base::TBioseq & CBlast4_value_Base::SetBioseq | ( | void | ) |
Select the variant.
Definition at line 261 of file Blast4_value_.cpp.
References CBlast4_value_Base::e_Bioseq, eDoNotResetVariant, CBlast4_value_Base::m_object, and CBlast4_value_Base::Select().
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Select the variant.
Definition at line 1160 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Bioseq_list, eDoNotResetVariant, CBlast4_value_Base::m_Bioseq_list, and CBlast4_value_Base::Select().
void CBlast4_queries_Base::SetBioseq_set | ( | CBlast4_queries_Base::TBioseq_set & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 144 of file Blast4_queries_.cpp.
References CObject::AddReference(), CBlast4_queries_Base::e_Bioseq_set, CBlast4_queries_Base::m_choice, CBlast4_queries_Base::m_object, CBlast4_queries_Base::ResetSelection(), and value.
void CBlast4_value_Base::SetBioseq_set | ( | CBlast4_value_Base::TBioseq_set & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 405 of file Blast4_value_.cpp.
References CObject::AddReference(), CBlast4_value_Base::e_Bioseq_set, CBlast4_value_Base::m_choice, CBlast4_value_Base::m_object, CBlast4_value_Base::ResetSelection(), and value.
CBlast4_queries_Base::TBioseq_set & CBlast4_queries_Base::SetBioseq_set | ( | void | ) |
Select the variant.
Definition at line 138 of file Blast4_queries_.cpp.
References CBlast4_queries_Base::e_Bioseq_set, eDoNotResetVariant, CBlast4_queries_Base::m_object, and CBlast4_queries_Base::Select().
Referenced by CGBProjectHelper::AddProjectItemsFromRID(), and CExportStrategy::x_Process_Query().
CBlast4_value_Base::TBioseq_set & CBlast4_value_Base::SetBioseq_set | ( | void | ) |
Select the variant.
Definition at line 399 of file Blast4_value_.cpp.
References CBlast4_value_Base::e_Bioseq_set, eDoNotResetVariant, CBlast4_value_Base::m_object, and CBlast4_value_Base::Select().
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Assign a value to Bit_score data member.
value | Value to assign |
Definition at line 534 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::m_Bit_score, CBlast4_simple_alignment_Base::m_set_State, and value.
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inline |
Assign a value to Bit_score data member.
Definition at line 541 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::IsSetBit_score(), CBlast4_simple_alignment_Base::m_Bit_score, CBlast4_simple_alignment_Base::m_set_State, and CSerialObject::UnassignedByte().
void CBlast4_reply_Base::SetBody | ( | CBlast4_reply_Base::TBody & | value | ) |
Assign a value to Body data member.
value | Reference to value. |
Definition at line 67 of file Blast4_reply_.cpp.
References CBlast4_reply_Base::m_Body, and value.
Referenced by CBlast4Client_Base::x_Choice().
void CBlast4_request_Base::SetBody | ( | CBlast4_request_Base::TBody & | value | ) |
Assign a value to Body data member.
value | Reference to value. |
Definition at line 66 of file Blast4_request_.cpp.
References CBlast4_request_Base::m_Body, and value.
Referenced by CBlast4Client_Base::Ask(), CBlastServices::GetDatabaseInfo(), CRemoteBlast::GetSearchStrategy(), CExportStrategy::GetSearchStrategy(), PrintErrorArchive(), s_BuildGetSeqPartsRequest(), s_BuildGetSeqRequest(), CRemoteBlast::x_GetRequestInfoFromRID(), CRemoteBlast::x_GetSearchResultsHTTP(), CRemoteBlast::x_GetSubjects(), and CRemoteBlast::x_SendRequest().
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inline |
Assign a value to Body data member.
Definition at line 282 of file Blast4_reply_.hpp.
References CBlast4_reply_Base::m_Body, and CBlast4_reply_Base::ResetBody().
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inline |
Assign a value to Body data member.
Definition at line 313 of file Blast4_request_.hpp.
References CBlast4_request_Base::m_Body, and CBlast4_request_Base::ResetBody().
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inline |
Select the variant and set its data.
value | Variant data. |
Definition at line 989 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Boolean, eDoNotResetVariant, CBlast4_value_Base::m_Boolean, CBlast4_value_Base::Select(), and value.
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Select the variant.
Definition at line 982 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Boolean, eDoNotResetVariant, CBlast4_value_Base::m_Boolean, and CBlast4_value_Base::Select().
Referenced by CBlast4_parameters::Add().
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Select the variant.
Definition at line 1180 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Boolean_list, eDoNotResetVariant, CBlast4_value_Base::m_Boolean_list, and CBlast4_value_Base::Select().
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Assign a value to Code data member.
value | Value to assign |
Definition at line 268 of file Blast4_error_.hpp.
References CBlast4_error_Base::m_Code, CBlast4_error_Base::m_set_State, and value.
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Assign a value to Code data member.
Definition at line 275 of file Blast4_error_.hpp.
References CBlast4_error_Base::IsSetCode(), CBlast4_error_Base::m_Code, CBlast4_error_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Created_by data member.
value | Value to assign |
Definition at line 633 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::m_Created_by, CBlast4_get_request_info_reply_Base::m_set_State, and value.
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inline |
Definition at line 640 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::m_Created_by, CBlast4_get_request_info_reply_Base::m_set_State, and value.
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Assign a value to Created_by data member.
Definition at line 647 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::IsSetCreated_by(), CBlast4_get_request_info_reply_Base::m_Created_by, CBlast4_get_request_info_reply_Base::m_set_State, and CSerialObject::UnassignedString().
void CBlast4_value_Base::SetCutoff | ( | CBlast4_value_Base::TCutoff & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 289 of file Blast4_value_.cpp.
References CObject::AddReference(), CBlast4_value_Base::e_Cutoff, CBlast4_value_Base::m_choice, CBlast4_value_Base::m_object, CBlast4_value_Base::ResetSelection(), and value.
CBlast4_value_Base::TCutoff & CBlast4_value_Base::SetCutoff | ( | void | ) |
Select the variant.
Definition at line 283 of file Blast4_value_.cpp.
References CBlast4_value_Base::e_Cutoff, eDoNotResetVariant, CBlast4_value_Base::m_object, and CBlast4_value_Base::Select().
Referenced by CBlast4_parameters::Add().
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inline |
Select the variant.
Definition at line 1200 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Cutoff_list, eDoNotResetVariant, CBlast4_value_Base::m_Cutoff_list, and CBlast4_value_Base::Select().
void CBlast4_seq_part_data_Base::SetData | ( | CBlast4_seq_part_data_Base::TData & | value | ) |
Assign a value to Data data member.
value | Reference to value. |
Definition at line 75 of file Blast4_seq_part_data_.cpp.
References CBlast4_seq_part_data_Base::m_Data, CRef< C, Locker >::Reset(), and value.
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Assign a value to Data data member.
Definition at line 254 of file Blast4_seq_part_data_.hpp.
References CBlast4_seq_part_data_Base::m_Data, and CBlast4_seq_part_data_Base::ResetData().
Select the variant and set its data.
value | Variant data. |
Definition at line 111 of file Blast4_subject_.cpp.
References CBlast4_subject_Base::e_Database, eDoNotResetVariant, CBlast4_subject_Base::m_string, CBlast4_subject_Base::Select(), and value.
void CBlast4_database_info_Base::SetDatabase | ( | CBlast4_database_info_Base::TDatabase & | value | ) |
Assign a value to Database data member.
value | Reference to value. |
Definition at line 61 of file Blast4_database_info_.cpp.
References CBlast4_database_info_Base::m_Database, and value.
void CBlast4_get_sequences_request_Base::SetDatabase | ( | CBlast4_get_sequences_request_Base::TDatabase & | value | ) |
Assign a value to Database data member.
value | Reference to value. |
Definition at line 61 of file Blast4_get_sequenc_request_.cpp.
References CBlast4_get_sequences_request_Base::m_Database, and value.
Referenced by s_BuildGetSeqRequest().
void CBlast4_get_request_info_reply_Base::SetDatabase | ( | CBlast4_get_request_info_reply_Base::TDatabase & | value | ) |
Assign a value to Database data member.
value | Reference to value. |
Definition at line 63 of file Blast_get_reque_info_reply_.cpp.
References CBlast4_get_request_info_reply_Base::m_Database, and value.
void CBlast4_get_seq_parts_request_Base::SetDatabase | ( | CBlast4_get_seq_parts_request_Base::TDatabase & | value | ) |
Assign a value to Database data member.
value | Reference to value. |
Definition at line 61 of file Blast_get_seq_parts_reques_.cpp.
References CBlast4_get_seq_parts_request_Base::m_Database, and value.
Referenced by s_BuildGetSeqPartsRequest().
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inline |
Assign a value to Database data member.
Definition at line 467 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::m_Database, and CBlast4_database_info_Base::ResetDatabase().
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Assign a value to Database data member.
Definition at line 309 of file Blast4_get_sequenc_request_.hpp.
References CBlast4_get_sequences_request_Base::m_Database, and CBlast4_get_sequences_request_Base::ResetDatabase().
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inline |
Select the variant.
Definition at line 299 of file Blast4_subject_.hpp.
References CBlast4_subject_Base::e_Database, eDoNotResetVariant, CBlast4_subject_Base::m_string, and CBlast4_subject_Base::Select().
Referenced by CRemoteBlast::SetDatabase(), and CExportStrategy::x_Process_SearchDb().
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inline |
Assign a value to Database data member.
Definition at line 509 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::m_Database, and CBlast4_get_request_info_reply_Base::ResetDatabase().
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inline |
Assign a value to Database data member.
Definition at line 225 of file Blast_get_seq_parts_reques_.hpp.
References CBlast4_get_seq_parts_request_Base::m_Database, and CBlast4_get_seq_parts_request_Base::ResetDatabase().
Definition at line 190 of file blastclient_.hpp.
References CBlast4Client_Base::m_DefaultRequest.
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inlinevirtual |
Definition at line 184 of file blastclient_.hpp.
References CBlast4Client_Base::m_DefaultRequest.
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inline |
Assign default value to Skip_seq_data data member.
Definition at line 362 of file Blast4_get_sequenc_request_.hpp.
References CBlast4_get_sequences_request_Base::ResetSkip_seq_data().
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inline |
Assign a value to Description data member.
value | Value to assign |
Definition at line 497 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::m_Description, CBlast4_database_info_Base::m_set_State, and value.
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inline |
Definition at line 504 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::m_Description, CBlast4_database_info_Base::m_set_State, and value.
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inline |
Assign a value to Description data member.
Definition at line 511 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::IsSetDescription(), CBlast4_database_info_Base::m_Description, CBlast4_database_info_Base::m_set_State, and CSerialObject::UnassignedString().
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inline |
Assign a value to Documentation data member.
value | Value to assign |
Definition at line 271 of file Blast4_task_info_.hpp.
References CBlast4_task_info_Base::m_Documentation, CBlast4_task_info_Base::m_set_State, and value.
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inline |
Definition at line 278 of file Blast4_task_info_.hpp.
References CBlast4_task_info_Base::m_Documentation, CBlast4_task_info_Base::m_set_State, and value.
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inline |
Assign a value to Documentation data member.
Definition at line 285 of file Blast4_task_info_.hpp.
References CBlast4_task_info_Base::IsSetDocumentation(), CBlast4_task_info_Base::m_Documentation, CBlast4_task_info_Base::m_set_State, and CSerialObject::UnassignedString().
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inline |
Select the variant and set its data.
value | Variant data. |
Definition at line 316 of file Blast4_cutoff_.hpp.
References CBlast4_cutoff_Base::e_E_value, eDoNotResetVariant, CBlast4_cutoff_Base::m_E_value, CBlast4_cutoff_Base::Select(), and value.
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inline |
Assign a value to E_value data member.
value | Value to assign |
Definition at line 487 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::m_E_value, CBlast4_simple_alignment_Base::m_set_State, and value.
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inline |
Select the variant.
Definition at line 309 of file Blast4_cutoff_.hpp.
References CBlast4_cutoff_Base::e_E_value, eDoNotResetVariant, CBlast4_cutoff_Base::m_E_value, and CBlast4_cutoff_Base::Select().
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inline |
Assign a value to E_value data member.
Definition at line 494 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::IsSetE_value(), CBlast4_simple_alignment_Base::m_E_value, CBlast4_simple_alignment_Base::m_set_State, and CSerialObject::UnassignedByte().
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inline |
Assign a value to End data member.
value | Value to assign |
Definition at line 312 of file Blast4_range_.hpp.
References CBlast4_range_Base::m_End, CBlast4_range_Base::m_set_State, and value.
|
inline |
Assign a value to End data member.
Definition at line 319 of file Blast4_range_.hpp.
References CBlast4_range_Base::IsSetEnd(), CBlast4_range_Base::m_End, CBlast4_range_Base::m_set_State, and CSerialObject::UnassignedByte().
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inline |
Assign a value to Errors data member.
Definition at line 254 of file Blast4_reply_.hpp.
References CBlast4_reply_Base::m_Errors, and CBlast4_reply_Base::m_set_State.
void CBlast4_database_info_Base::SetExtended | ( | CBlast4_database_info_Base::TExtended & | value | ) |
Assign a value to Extended data member.
value | Reference to value. |
Definition at line 83 of file Blast4_database_info_.cpp.
References CBlast4_database_info_Base::m_Extended, and value.
CBlast4_database_info_Base::TExtended & CBlast4_database_info_Base::SetExtended | ( | void | ) |
Assign a value to Extended data member.
Definition at line 88 of file Blast4_database_info_.cpp.
References CBlast4_database_info_Base::m_Extended.
void CBlast4_reply_body_Base::SetFinish_params | ( | CBlast4_reply_body_Base::TFinish_params & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 198 of file Blast4_reply_body_.cpp.
References CObject::AddReference(), CBlast4_reply_body_Base::e_Finish_params, CBlast4_reply_body_Base::m_choice, CBlast4_reply_body_Base::m_object, CBlast4_reply_body_Base::ResetSelection(), and value.
void CBlast4_request_body_Base::SetFinish_params | ( | CBlast4_request_body_Base::TFinish_params & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 162 of file Blast4_request_body_.cpp.
References CObject::AddReference(), CBlast4_request_body_Base::e_Finish_params, CBlast4_request_body_Base::m_choice, CBlast4_request_body_Base::m_object, CBlast4_request_body_Base::ResetSelection(), and value.
CBlast4_reply_body_Base::TFinish_params & CBlast4_reply_body_Base::SetFinish_params | ( | void | ) |
Select the variant.
Definition at line 192 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::e_Finish_params, eDoNotResetVariant, CBlast4_reply_body_Base::m_object, and CBlast4_reply_body_Base::Select().
Referenced by CBlast4Client_Base::AskFinish_params().
CBlast4_request_body_Base::TFinish_params & CBlast4_request_body_Base::SetFinish_params | ( | void | ) |
Select the variant.
Definition at line 156 of file Blast4_request_body_.cpp.
References CBlast4_request_body_Base::e_Finish_params, eDoNotResetVariant, CBlast4_request_body_Base::m_object, and CBlast4_request_body_Base::Select().
Referenced by CBlast4Client_Base::AskFinish_params().
void CBlast4_queue_search_request_Base::SetFormat_options | ( | CBlast4_queue_search_request_Base::TFormat_options & | value | ) |
Assign a value to Format_options data member.
value | Reference to value. |
Definition at line 138 of file Blast4_queue_search_reques_.cpp.
References CBlast4_queue_search_request_Base::m_Format_options, and value.
Referenced by CImportStrategy::GetWebFormatOptions(), and CExportStrategy::x_AddPsiNumOfIterationsToFormatOptions().
void CBlast4_get_request_info_reply_Base::SetFormat_options | ( | CBlast4_get_request_info_reply_Base::TFormat_options & | value | ) |
Assign a value to Format_options data member.
value | Reference to value. |
Definition at line 133 of file Blast_get_reque_info_reply_.cpp.
References CBlast4_get_request_info_reply_Base::m_Format_options, and value.
CBlast4_queue_search_request_Base::TFormat_options & CBlast4_queue_search_request_Base::SetFormat_options | ( | void | ) |
Assign a value to Format_options data member.
Definition at line 143 of file Blast4_queue_search_reques_.cpp.
References CBlast4_queue_search_request_Base::m_Format_options.
CBlast4_get_request_info_reply_Base::TFormat_options & CBlast4_get_request_info_reply_Base::SetFormat_options | ( | void | ) |
Assign a value to Format_options data member.
Definition at line 138 of file Blast_get_reque_info_reply_.cpp.
References CBlast4_get_request_info_reply_Base::m_Format_options.
|
inline |
Assign a value to Frame data member.
value | Value to assign |
Definition at line 264 of file Blast4_mask_.hpp.
References CBlast4_mask_Base::m_Frame, CBlast4_mask_Base::m_set_State, and value.
|
inline |
Assign a value to Frame data member.
Definition at line 271 of file Blast4_mask_.hpp.
References CBlast4_mask_Base::IsSetFrame(), CBlast4_mask_Base::m_Frame, CBlast4_mask_Base::m_set_State, and CSerialObject::UnassignedByte().
void CBlast4_simple_alignment_Base::SetFull_query_range | ( | CBlast4_simple_alignment_Base::TFull_query_range & | value | ) |
Assign a value to Full_query_range data member.
value | Reference to value. |
Definition at line 66 of file Blast4_simple_alignment_.cpp.
References CBlast4_simple_alignment_Base::m_Full_query_range, and value.
|
inline |
Assign a value to Full_query_range data member.
Definition at line 668 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::m_Full_query_range, and CBlast4_simple_alignment_Base::ResetFull_query_range().
void CBlast4_simple_alignment_Base::SetFull_subject_range | ( | CBlast4_simple_alignment_Base::TFull_subject_range & | value | ) |
Assign a value to Full_subject_range data member.
value | Reference to value. |
Definition at line 80 of file Blast4_simple_alignment_.cpp.
References CBlast4_simple_alignment_Base::m_Full_subject_range, and value.
|
inline |
Assign a value to Full_subject_range data member.
Definition at line 698 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::m_Full_subject_range, and CBlast4_simple_alignment_Base::ResetFull_subject_range().
|
inline |
Assign a value to Gapped data member.
value | Value to assign |
Definition at line 443 of file Blast4_ka_block_.hpp.
References CBlast4_ka_block_Base::m_Gapped, CBlast4_ka_block_Base::m_set_State, and value.
|
inline |
Assign a value to Gapped data member.
Definition at line 450 of file Blast4_ka_block_.hpp.
References CBlast4_ka_block_Base::IsSetGapped(), CBlast4_ka_block_Base::m_Gapped, CBlast4_ka_block_Base::m_set_State, and CSerialObject::UnassignedByte().
void CBlast4_reply_body_Base::SetGet_databases | ( | CBlast4_reply_body_Base::TGet_databases & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 220 of file Blast4_reply_body_.cpp.
References CObject::AddReference(), CBlast4_reply_body_Base::e_Get_databases, CBlast4_reply_body_Base::m_choice, CBlast4_reply_body_Base::m_object, CBlast4_reply_body_Base::ResetSelection(), and value.
CBlast4_reply_body_Base::TGet_databases & CBlast4_reply_body_Base::SetGet_databases | ( | void | ) |
Select the variant.
Definition at line 214 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::e_Get_databases, eDoNotResetVariant, CBlast4_reply_body_Base::m_object, and CBlast4_reply_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_databases().
|
inline |
Select the variant.
Definition at line 546 of file Blast4_request_body_.hpp.
References CBlast4_request_body_Base::e_Get_databases, eDoNotResetVariant, and CBlast4_request_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_databases().
void CBlast4_reply_body_Base::SetGet_databases_ex | ( | CBlast4_reply_body_Base::TGet_databases_ex & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 528 of file Blast4_reply_body_.cpp.
References CObject::AddReference(), CBlast4_reply_body_Base::e_Get_databases_ex, CBlast4_reply_body_Base::m_choice, CBlast4_reply_body_Base::m_object, CBlast4_reply_body_Base::ResetSelection(), and value.
void CBlast4_request_body_Base::SetGet_databases_ex | ( | CBlast4_request_body_Base::TGet_databases_ex & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 338 of file Blast4_request_body_.cpp.
References CObject::AddReference(), CBlast4_request_body_Base::e_Get_databases_ex, CBlast4_request_body_Base::m_choice, CBlast4_request_body_Base::m_object, CBlast4_request_body_Base::ResetSelection(), and value.
CBlast4_reply_body_Base::TGet_databases_ex & CBlast4_reply_body_Base::SetGet_databases_ex | ( | void | ) |
Select the variant.
Definition at line 522 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::e_Get_databases_ex, eDoNotResetVariant, CBlast4_reply_body_Base::m_object, and CBlast4_reply_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_databases_ex().
CBlast4_request_body_Base::TGet_databases_ex & CBlast4_request_body_Base::SetGet_databases_ex | ( | void | ) |
Select the variant.
Definition at line 332 of file Blast4_request_body_.cpp.
References CBlast4_request_body_Base::e_Get_databases_ex, eDoNotResetVariant, CBlast4_request_body_Base::m_object, and CBlast4_request_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_databases_ex(), and CBlastServices::GetDatabaseInfo().
void CBlast4_reply_body_Base::SetGet_matrices | ( | CBlast4_reply_body_Base::TGet_matrices & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 242 of file Blast4_reply_body_.cpp.
References CObject::AddReference(), CBlast4_reply_body_Base::e_Get_matrices, CBlast4_reply_body_Base::m_choice, CBlast4_reply_body_Base::m_object, CBlast4_reply_body_Base::ResetSelection(), and value.
CBlast4_reply_body_Base::TGet_matrices & CBlast4_reply_body_Base::SetGet_matrices | ( | void | ) |
Select the variant.
Definition at line 236 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::e_Get_matrices, eDoNotResetVariant, CBlast4_reply_body_Base::m_object, and CBlast4_reply_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_matrices().
|
inline |
Select the variant.
Definition at line 558 of file Blast4_request_body_.hpp.
References CBlast4_request_body_Base::e_Get_matrices, eDoNotResetVariant, and CBlast4_request_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_matrices().
void CBlast4_reply_body_Base::SetGet_parameters | ( | CBlast4_reply_body_Base::TGet_parameters & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 264 of file Blast4_reply_body_.cpp.
References CObject::AddReference(), CBlast4_reply_body_Base::e_Get_parameters, CBlast4_reply_body_Base::m_choice, CBlast4_reply_body_Base::m_object, CBlast4_reply_body_Base::ResetSelection(), and value.
CBlast4_reply_body_Base::TGet_parameters & CBlast4_reply_body_Base::SetGet_parameters | ( | void | ) |
Select the variant.
Definition at line 258 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::e_Get_parameters, eDoNotResetVariant, CBlast4_reply_body_Base::m_object, and CBlast4_reply_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_parameters().
|
inline |
Select the variant.
Definition at line 570 of file Blast4_request_body_.hpp.
References CBlast4_request_body_Base::e_Get_parameters, eDoNotResetVariant, and CBlast4_request_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_parameters().
void CBlast4_reply_body_Base::SetGet_paramsets | ( | CBlast4_reply_body_Base::TGet_paramsets & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 286 of file Blast4_reply_body_.cpp.
References CObject::AddReference(), CBlast4_reply_body_Base::e_Get_paramsets, CBlast4_reply_body_Base::m_choice, CBlast4_reply_body_Base::m_object, CBlast4_reply_body_Base::ResetSelection(), and value.
CBlast4_reply_body_Base::TGet_paramsets & CBlast4_reply_body_Base::SetGet_paramsets | ( | void | ) |
Select the variant.
Definition at line 280 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::e_Get_paramsets, eDoNotResetVariant, CBlast4_reply_body_Base::m_object, and CBlast4_reply_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_paramsets().
|
inline |
Select the variant.
Definition at line 582 of file Blast4_request_body_.hpp.
References CBlast4_request_body_Base::e_Get_paramsets, eDoNotResetVariant, and CBlast4_request_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_paramsets().
void CBlast4_reply_body_Base::SetGet_programs | ( | CBlast4_reply_body_Base::TGet_programs & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 308 of file Blast4_reply_body_.cpp.
References CObject::AddReference(), CBlast4_reply_body_Base::e_Get_programs, CBlast4_reply_body_Base::m_choice, CBlast4_reply_body_Base::m_object, CBlast4_reply_body_Base::ResetSelection(), and value.
CBlast4_reply_body_Base::TGet_programs & CBlast4_reply_body_Base::SetGet_programs | ( | void | ) |
Select the variant.
Definition at line 302 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::e_Get_programs, eDoNotResetVariant, CBlast4_reply_body_Base::m_object, and CBlast4_reply_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_programs().
|
inline |
Select the variant.
Definition at line 594 of file Blast4_request_body_.hpp.
References CBlast4_request_body_Base::e_Get_programs, eDoNotResetVariant, and CBlast4_request_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_programs().
void CBlast4_reply_body_Base::SetGet_protocol_info | ( | CBlast4_reply_body_Base::TGet_protocol_info & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 484 of file Blast4_reply_body_.cpp.
References CObject::AddReference(), CBlast4_reply_body_Base::e_Get_protocol_info, CBlast4_reply_body_Base::m_choice, CBlast4_reply_body_Base::m_object, CBlast4_reply_body_Base::ResetSelection(), and value.
void CBlast4_request_body_Base::SetGet_protocol_info | ( | CBlast4_request_body_Base::TGet_protocol_info & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 294 of file Blast4_request_body_.cpp.
References CObject::AddReference(), CBlast4_request_body_Base::e_Get_protocol_info, CBlast4_request_body_Base::m_choice, CBlast4_request_body_Base::m_object, CBlast4_request_body_Base::ResetSelection(), and value.
CBlast4_reply_body_Base::TGet_protocol_info & CBlast4_reply_body_Base::SetGet_protocol_info | ( | void | ) |
Select the variant.
Definition at line 478 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::e_Get_protocol_info, eDoNotResetVariant, CBlast4_reply_body_Base::m_object, and CBlast4_reply_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_protocol_info().
CBlast4_request_body_Base::TGet_protocol_info & CBlast4_request_body_Base::SetGet_protocol_info | ( | void | ) |
Select the variant.
Definition at line 288 of file Blast4_request_body_.cpp.
References CBlast4_request_body_Base::e_Get_protocol_info, eDoNotResetVariant, CBlast4_request_body_Base::m_object, and CBlast4_request_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_protocol_info().
void CBlast4_reply_body_Base::SetGet_queries | ( | CBlast4_reply_body_Base::TGet_queries & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 396 of file Blast4_reply_body_.cpp.
References CObject::AddReference(), CBlast4_reply_body_Base::e_Get_queries, CBlast4_reply_body_Base::m_choice, CBlast4_reply_body_Base::m_object, CBlast4_reply_body_Base::ResetSelection(), and value.
CBlast4_reply_body_Base::TGet_queries & CBlast4_reply_body_Base::SetGet_queries | ( | void | ) |
Select the variant.
Definition at line 390 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::e_Get_queries, eDoNotResetVariant, CBlast4_reply_body_Base::m_object, and CBlast4_reply_body_Base::Select().
void CBlast4_reply_body_Base::SetGet_request_info | ( | CBlast4_reply_body_Base::TGet_request_info & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 418 of file Blast4_reply_body_.cpp.
References CObject::AddReference(), CBlast4_reply_body_Base::e_Get_request_info, CBlast4_reply_body_Base::m_choice, CBlast4_reply_body_Base::m_object, CBlast4_reply_body_Base::ResetSelection(), and value.
void CBlast4_request_body_Base::SetGet_request_info | ( | CBlast4_request_body_Base::TGet_request_info & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 250 of file Blast4_request_body_.cpp.
References CObject::AddReference(), CBlast4_request_body_Base::e_Get_request_info, CBlast4_request_body_Base::m_choice, CBlast4_request_body_Base::m_object, CBlast4_request_body_Base::ResetSelection(), and value.
CBlast4_reply_body_Base::TGet_request_info & CBlast4_reply_body_Base::SetGet_request_info | ( | void | ) |
Select the variant.
Definition at line 412 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::e_Get_request_info, eDoNotResetVariant, CBlast4_reply_body_Base::m_object, and CBlast4_reply_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_request_info().
CBlast4_request_body_Base::TGet_request_info & CBlast4_request_body_Base::SetGet_request_info | ( | void | ) |
Select the variant.
Definition at line 244 of file Blast4_request_body_.cpp.
References CBlast4_request_body_Base::e_Get_request_info, eDoNotResetVariant, CBlast4_request_body_Base::m_object, and CBlast4_request_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_request_info(), and CRemoteBlast::x_GetRequestInfoFromRID().
void CBlast4_reply_body_Base::SetGet_search_info | ( | CBlast4_reply_body_Base::TGet_search_info & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 506 of file Blast4_reply_body_.cpp.
References CObject::AddReference(), CBlast4_reply_body_Base::e_Get_search_info, CBlast4_reply_body_Base::m_choice, CBlast4_reply_body_Base::m_object, CBlast4_reply_body_Base::ResetSelection(), and value.
void CBlast4_request_body_Base::SetGet_search_info | ( | CBlast4_request_body_Base::TGet_search_info & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 316 of file Blast4_request_body_.cpp.
References CObject::AddReference(), CBlast4_request_body_Base::e_Get_search_info, CBlast4_request_body_Base::m_choice, CBlast4_request_body_Base::m_object, CBlast4_request_body_Base::ResetSelection(), and value.
CBlast4_reply_body_Base::TGet_search_info & CBlast4_reply_body_Base::SetGet_search_info | ( | void | ) |
Select the variant.
Definition at line 500 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::e_Get_search_info, eDoNotResetVariant, CBlast4_reply_body_Base::m_object, and CBlast4_reply_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_search_info().
CBlast4_request_body_Base::TGet_search_info & CBlast4_request_body_Base::SetGet_search_info | ( | void | ) |
Select the variant.
Definition at line 310 of file Blast4_request_body_.cpp.
References CBlast4_request_body_Base::e_Get_search_info, eDoNotResetVariant, CBlast4_request_body_Base::m_object, and CBlast4_request_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_search_info(), and s_BuildSearchInfoRequest().
void CBlast4_reply_body_Base::SetGet_search_results | ( | CBlast4_reply_body_Base::TGet_search_results & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 330 of file Blast4_reply_body_.cpp.
References CObject::AddReference(), CBlast4_reply_body_Base::e_Get_search_results, CBlast4_reply_body_Base::m_choice, CBlast4_reply_body_Base::m_object, CBlast4_reply_body_Base::ResetSelection(), and value.
void CBlast4_request_body_Base::SetGet_search_results | ( | CBlast4_request_body_Base::TGet_search_results & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 184 of file Blast4_request_body_.cpp.
References CObject::AddReference(), CBlast4_request_body_Base::e_Get_search_results, CBlast4_request_body_Base::m_choice, CBlast4_request_body_Base::m_object, CBlast4_request_body_Base::ResetSelection(), and value.
CBlast4_reply_body_Base::TGet_search_results & CBlast4_reply_body_Base::SetGet_search_results | ( | void | ) |
Select the variant.
Definition at line 324 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::e_Get_search_results, eDoNotResetVariant, CBlast4_reply_body_Base::m_object, and CBlast4_reply_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_search_results().
CBlast4_request_body_Base::TGet_search_results & CBlast4_request_body_Base::SetGet_search_results | ( | void | ) |
Select the variant.
Definition at line 178 of file Blast4_request_body_.cpp.
References CBlast4_request_body_Base::e_Get_search_results, eDoNotResetVariant, CBlast4_request_body_Base::m_object, and CBlast4_request_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_search_results(), CRemoteBlast::x_GetSearchResults(), CRemoteBlast::x_GetSearchResultsHTTP(), and CRemoteBlast::x_GetSearchStatsOnly().
void CBlast4_reply_body_Base::SetGet_sequence_parts | ( | CBlast4_reply_body_Base::TGet_sequence_parts & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 440 of file Blast4_reply_body_.cpp.
References CObject::AddReference(), CBlast4_reply_body_Base::e_Get_sequence_parts, CBlast4_reply_body_Base::m_choice, CBlast4_reply_body_Base::m_object, CBlast4_reply_body_Base::ResetSelection(), and value.
void CBlast4_request_body_Base::SetGet_sequence_parts | ( | CBlast4_request_body_Base::TGet_sequence_parts & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 272 of file Blast4_request_body_.cpp.
References CObject::AddReference(), CBlast4_request_body_Base::e_Get_sequence_parts, CBlast4_request_body_Base::m_choice, CBlast4_request_body_Base::m_object, CBlast4_request_body_Base::ResetSelection(), and value.
CBlast4_reply_body_Base::TGet_sequence_parts & CBlast4_reply_body_Base::SetGet_sequence_parts | ( | void | ) |
Select the variant.
Definition at line 434 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::e_Get_sequence_parts, eDoNotResetVariant, CBlast4_reply_body_Base::m_object, and CBlast4_reply_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_sequence_parts().
CBlast4_request_body_Base::TGet_sequence_parts & CBlast4_request_body_Base::SetGet_sequence_parts | ( | void | ) |
Select the variant.
Definition at line 266 of file Blast4_request_body_.cpp.
References CBlast4_request_body_Base::e_Get_sequence_parts, eDoNotResetVariant, CBlast4_request_body_Base::m_object, and CBlast4_request_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_sequence_parts(), and s_BuildGetSeqPartsRequest().
void CBlast4_reply_body_Base::SetGet_sequences | ( | CBlast4_reply_body_Base::TGet_sequences & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 352 of file Blast4_reply_body_.cpp.
References CObject::AddReference(), CBlast4_reply_body_Base::e_Get_sequences, CBlast4_reply_body_Base::m_choice, CBlast4_reply_body_Base::m_object, CBlast4_reply_body_Base::ResetSelection(), and value.
void CBlast4_request_body_Base::SetGet_sequences | ( | CBlast4_request_body_Base::TGet_sequences & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 206 of file Blast4_request_body_.cpp.
References CObject::AddReference(), CBlast4_request_body_Base::e_Get_sequences, CBlast4_request_body_Base::m_choice, CBlast4_request_body_Base::m_object, CBlast4_request_body_Base::ResetSelection(), and value.
CBlast4_reply_body_Base::TGet_sequences & CBlast4_reply_body_Base::SetGet_sequences | ( | void | ) |
Select the variant.
Definition at line 346 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::e_Get_sequences, eDoNotResetVariant, CBlast4_reply_body_Base::m_object, and CBlast4_reply_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_sequences().
CBlast4_request_body_Base::TGet_sequences & CBlast4_request_body_Base::SetGet_sequences | ( | void | ) |
Select the variant.
Definition at line 200 of file Blast4_request_body_.cpp.
References CBlast4_request_body_Base::e_Get_sequences, eDoNotResetVariant, CBlast4_request_body_Base::m_object, and CBlast4_request_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_sequences(), and s_BuildGetSeqRequest().
void CBlast4_reply_body_Base::SetGet_windowmasked_taxids | ( | CBlast4_reply_body_Base::TGet_windowmasked_taxids & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 462 of file Blast4_reply_body_.cpp.
References CObject::AddReference(), CBlast4_reply_body_Base::e_Get_windowmasked_taxids, CBlast4_reply_body_Base::m_choice, CBlast4_reply_body_Base::m_object, CBlast4_reply_body_Base::ResetSelection(), and value.
CBlast4_reply_body_Base::TGet_windowmasked_taxids & CBlast4_reply_body_Base::SetGet_windowmasked_taxids | ( | void | ) |
Select the variant.
Definition at line 456 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::e_Get_windowmasked_taxids, eDoNotResetVariant, CBlast4_reply_body_Base::m_object, and CBlast4_reply_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_windowmasked_taxids().
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Select the variant.
Definition at line 636 of file Blast4_request_body_.hpp.
References CBlast4_request_body_Base::e_Get_windowmasked_taxids, eDoNotResetVariant, and CBlast4_request_body_Base::Select().
Referenced by CBlast4Client_Base::AskGet_windowmasked_taxids().
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Assign a value to H data member.
value | Value to assign |
Definition at line 396 of file Blast4_ka_block_.hpp.
References CBlast4_ka_block_Base::m_H, CBlast4_ka_block_Base::m_set_State, and value.
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Assign a value to H data member.
Definition at line 403 of file Blast4_ka_block_.hpp.
References CBlast4_ka_block_Base::IsSetH(), CBlast4_ka_block_Base::m_H, CBlast4_ka_block_Base::m_set_State, and CSerialObject::UnassignedByte().
void CBlast4_seq_part_data_Base::SetId | ( | CBlast4_seq_part_data_Base::TId & | value | ) |
Assign a value to Id data member.
value | Reference to value. |
Definition at line 61 of file Blast4_seq_part_data_.cpp.
References CBlast4_seq_part_data_Base::m_Id, and value.
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Assign a value to Id data member.
Definition at line 224 of file Blast4_seq_part_data_.hpp.
References CBlast4_seq_part_data_Base::m_Id, and CBlast4_seq_part_data_Base::ResetId().
Assign a value to Ident data member.
value | Value to assign |
Definition at line 266 of file Blast4_request_.hpp.
References CBlast4_request_Base::m_Ident, CBlast4_request_Base::m_set_State, and value.
Referenced by CRemoteBlast::GetSearchStrategy(), CExportStrategy::GetSearchStrategy(), s_BuildArchiveAll(), CRemoteBlast::x_GetRequestInfoFromRID(), and CRemoteBlast::x_SendRequest().
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Definition at line 273 of file Blast4_request_.hpp.
References CBlast4_request_Base::m_Ident, CBlast4_request_Base::m_set_State, and value.
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Assign a value to Ident data member.
Definition at line 280 of file Blast4_request_.hpp.
References CBlast4_request_Base::IsSetIdent(), CBlast4_request_Base::m_Ident, CBlast4_request_Base::m_set_State, and CSerialObject::UnassignedString().
void CBlast4_get_search_info_reply_Base::SetInfo | ( | CBlast4_get_search_info_reply_Base::TInfo & | value | ) |
Assign a value to Info data member.
value | Reference to value. |
Definition at line 62 of file Blast_get_searc_info_reply_.cpp.
References CBlast4_get_search_info_reply_Base::m_Info, CRef< C, Locker >::Reset(), and value.
void CBlast4_get_search_info_request_Base::SetInfo | ( | CBlast4_get_search_info_request_Base::TInfo & | value | ) |
Assign a value to Info data member.
value | Reference to value. |
Definition at line 62 of file Blast_get_searc_info_reque_.cpp.
References CBlast4_get_search_info_request_Base::m_Info, CRef< C, Locker >::Reset(), and value.
CBlast4_get_search_info_reply_Base::TInfo & CBlast4_get_search_info_reply_Base::SetInfo | ( | void | ) |
Assign a value to Info data member.
Definition at line 67 of file Blast_get_searc_info_reply_.cpp.
References CBlast4_get_search_info_reply_Base::m_Info, and CRef< C, Locker >::Reset().
CBlast4_get_search_info_request_Base::TInfo & CBlast4_get_search_info_request_Base::SetInfo | ( | void | ) |
Assign a value to Info data member.
Definition at line 67 of file Blast_get_searc_info_reque_.cpp.
References CBlast4_get_search_info_request_Base::m_Info, and CRef< C, Locker >::Reset().
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Select the variant and set its data.
value | Variant data. |
Definition at line 1022 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Integer, eDoNotResetVariant, CBlast4_value_Base::m_Integer, CBlast4_value_Base::Select(), and value.
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Select the variant.
Definition at line 1015 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Integer, eDoNotResetVariant, CBlast4_value_Base::m_Integer, and CBlast4_value_Base::Select().
Referenced by CBlast4_parameters::Add(), CExportStrategy::x_AddParameterToProgramOptions(), CExportStrategy::x_AddPsiNumOfIterationsToFormatOptions(), and CRemoteBlast::x_SetOneParam().
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Select the variant.
Definition at line 1220 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Integer_list, eDoNotResetVariant, CBlast4_value_Base::m_Integer_list, and CBlast4_value_Base::Select().
Referenced by CExportStrategy::x_AddParameterToProgramOptions(), and CRemoteBlast::x_SetOneParam().
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Assign a value to K data member.
value | Value to assign |
Definition at line 349 of file Blast4_ka_block_.hpp.
References CBlast4_ka_block_Base::m_K, CBlast4_ka_block_Base::m_set_State, and value.
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Assign a value to K data member.
Definition at line 356 of file Blast4_ka_block_.hpp.
References CBlast4_ka_block_Base::IsSetK(), CBlast4_ka_block_Base::m_K, CBlast4_ka_block_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Ka_blocks data member.
Definition at line 477 of file Blas_get_searc_resul_reply_.hpp.
References CBlast4_get_search_results_reply_Base::m_Ka_blocks, and CBlast4_get_search_results_reply_Base::m_set_State.
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Assign a value to Lambda data member.
value | Value to assign |
Definition at line 302 of file Blast4_ka_block_.hpp.
References CBlast4_ka_block_Base::m_Lambda, CBlast4_ka_block_Base::m_set_State, and value.
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Assign a value to Lambda data member.
Definition at line 309 of file Blast4_ka_block_.hpp.
References CBlast4_ka_block_Base::IsSetLambda(), CBlast4_ka_block_Base::m_Lambda, CBlast4_ka_block_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Last_updated data member.
value | Value to assign |
Definition at line 544 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::m_Last_updated, CBlast4_database_info_Base::m_set_State, and value.
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Definition at line 551 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::m_Last_updated, CBlast4_database_info_Base::m_set_State, and value.
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Assign a value to Last_updated data member.
Definition at line 558 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::IsSetLast_updated(), CBlast4_database_info_Base::m_Last_updated, CBlast4_database_info_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Locations data member.
Definition at line 229 of file Blast4_mask_.hpp.
References CBlast4_mask_Base::m_Locations, and CBlast4_mask_Base::m_set_State.
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Assign a value to Masks data member.
Definition at line 452 of file Blas_get_searc_resul_reply_.hpp.
References CBlast4_get_search_results_reply_Base::m_Masks, and CBlast4_get_search_results_reply_Base::m_set_State.
void CBlast4_value_Base::SetMatrix | ( | CBlast4_value_Base::TMatrix & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 311 of file Blast4_value_.cpp.
References CObject::AddReference(), CBlast4_value_Base::e_Matrix, CBlast4_value_Base::m_choice, CBlast4_value_Base::m_object, CBlast4_value_Base::ResetSelection(), and value.
CBlast4_value_Base::TMatrix & CBlast4_value_Base::SetMatrix | ( | void | ) |
Select the variant.
Definition at line 305 of file Blast4_value_.cpp.
References CBlast4_value_Base::e_Matrix, eDoNotResetVariant, CBlast4_value_Base::m_object, and CBlast4_value_Base::Select().
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Select the variant.
Definition at line 1240 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Matrix_list, eDoNotResetVariant, CBlast4_value_Base::m_Matrix_list, and CBlast4_value_Base::Select().
Assign a value to Message data member.
value | Value to assign |
Definition at line 308 of file Blast4_error_.hpp.
References CBlast4_error_Base::m_Message, CBlast4_error_Base::m_set_State, and value.
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Definition at line 315 of file Blast4_error_.hpp.
References CBlast4_error_Base::m_Message, CBlast4_error_Base::m_set_State, and value.
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Assign a value to Message data member.
Definition at line 322 of file Blast4_error_.hpp.
References CBlast4_error_Base::IsSetMessage(), CBlast4_error_Base::m_Message, CBlast4_error_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Messages data member.
Definition at line 320 of file Blast4_archive_.hpp.
References CBlast4_archive_Base::m_Messages, and CBlast4_archive_Base::m_set_State.
Referenced by PrintErrorArchive().
Assign a value to Name data member.
value | Value to assign |
Definition at line 221 of file Blast4_database_.hpp.
References CBlast4_database_Base::m_Name, CBlast4_database_Base::m_set_State, and value.
Referenced by BOOST_AUTO_TEST_CASE(), CBlastServices::GetDatabaseInfoLegacy(), s_BuildGetSeqPartsRequest(), and s_BuildGetSeqRequest().
Assign a value to Name data member.
value | Value to assign |
Definition at line 268 of file Blast4_matrix_id_.hpp.
References CBlast4_matrix_id_Base::m_Name, CBlast4_matrix_id_Base::m_set_State, and value.
Assign a value to Name data member.
value | Value to assign |
Definition at line 224 of file Blast4_parameter_.hpp.
References CBlast4_parameter_Base::m_Name, CBlast4_parameter_Base::m_set_State, and value.
Assign a value to Name data member.
value | Value to assign |
Definition at line 221 of file Blast4_parameter_info_.hpp.
References CBlast4_parameter_info_Base::m_Name, CBlast4_parameter_info_Base::m_set_State, and value.
Assign a value to Name data member.
value | Value to assign |
Definition at line 224 of file Blast4_task_info_.hpp.
References CBlast4_task_info_Base::m_Name, CBlast4_task_info_Base::m_set_State, and value.
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Definition at line 228 of file Blast4_database_.hpp.
References CBlast4_database_Base::m_Name, CBlast4_database_Base::m_set_State, and value.
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Definition at line 275 of file Blast4_matrix_id_.hpp.
References CBlast4_matrix_id_Base::m_Name, CBlast4_matrix_id_Base::m_set_State, and value.
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Definition at line 231 of file Blast4_parameter_.hpp.
References CBlast4_parameter_Base::m_Name, CBlast4_parameter_Base::m_set_State, and value.
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Definition at line 228 of file Blast4_parameter_info_.hpp.
References CBlast4_parameter_info_Base::m_Name, CBlast4_parameter_info_Base::m_set_State, and value.
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Definition at line 231 of file Blast4_task_info_.hpp.
References CBlast4_task_info_Base::m_Name, CBlast4_task_info_Base::m_set_State, and value.
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Assign a value to Name data member.
Definition at line 235 of file Blast4_database_.hpp.
References CBlast4_database_Base::IsSetName(), CBlast4_database_Base::m_Name, CBlast4_database_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Name data member.
Definition at line 282 of file Blast4_matrix_id_.hpp.
References CBlast4_matrix_id_Base::IsSetName(), CBlast4_matrix_id_Base::m_Name, CBlast4_matrix_id_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Name data member.
Definition at line 238 of file Blast4_parameter_.hpp.
References CBlast4_parameter_Base::IsSetName(), CBlast4_parameter_Base::m_Name, CBlast4_parameter_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Name data member.
Definition at line 235 of file Blast4_parameter_info_.hpp.
References CBlast4_parameter_info_Base::IsSetName(), CBlast4_parameter_info_Base::m_Name, CBlast4_parameter_info_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Name data member.
Definition at line 238 of file Blast4_task_info_.hpp.
References CBlast4_task_info_Base::IsSetName(), CBlast4_task_info_Base::m_Name, CBlast4_task_info_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Num_alignments data member.
value | Value to assign |
Definition at line 224 of file Blast4_phi_alignments_.hpp.
References CBlast4_phi_alignments_Base::m_Num_alignments, CBlast4_phi_alignments_Base::m_set_State, and value.
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Assign a value to Num_alignments data member.
Definition at line 231 of file Blast4_phi_alignments_.hpp.
References CBlast4_phi_alignments_Base::IsSetNum_alignments(), CBlast4_phi_alignments_Base::m_Num_alignments, CBlast4_phi_alignments_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Num_identities data member.
value | Value to assign |
Definition at line 581 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::m_Num_identities, CBlast4_simple_alignment_Base::m_set_State, and value.
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Assign a value to Num_identities data member.
Definition at line 588 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::IsSetNum_identities(), CBlast4_simple_alignment_Base::m_Num_identities, CBlast4_simple_alignment_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Num_indels data member.
value | Value to assign |
Definition at line 628 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::m_Num_indels, CBlast4_simple_alignment_Base::m_set_State, and value.
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Assign a value to Num_indels data member.
Definition at line 635 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::IsSetNum_indels(), CBlast4_simple_alignment_Base::m_Num_indels, CBlast4_simple_alignment_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Num_sequences data member.
value | Value to assign |
Definition at line 645 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::m_Num_sequences, CBlast4_database_info_Base::m_set_State, and value.
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Assign a value to Num_sequences data member.
Definition at line 652 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::IsSetNum_sequences(), CBlast4_database_info_Base::m_Num_sequences, CBlast4_database_info_Base::m_set_State, and CSerialObject::UnassignedByte().
void CBlast4_finish_params_request_Base::SetParams | ( | CBlast4_finish_params_request_Base::TParams & | value | ) |
Assign a value to Params data member.
value | Reference to value. |
Definition at line 74 of file Blast_finish_params_reques_.cpp.
References CBlast4_finish_params_request_Base::m_Params, and value.
void CBlast4_get_databases_ex_request_Base::SetParams | ( | CBlast4_get_databases_ex_request_Base::TParams & | value | ) |
Assign a value to Params data member.
value | Reference to value. |
Definition at line 56 of file Blast_get_databa_ex_reques_.cpp.
References CBlast4_get_databases_ex_request_Base::m_Params, and value.
CBlast4_finish_params_request_Base::TParams & CBlast4_finish_params_request_Base::SetParams | ( | void | ) |
Assign a value to Params data member.
Definition at line 79 of file Blast_finish_params_reques_.cpp.
References CBlast4_finish_params_request_Base::m_Params.
CBlast4_get_databases_ex_request_Base::TParams & CBlast4_get_databases_ex_request_Base::SetParams | ( | void | ) |
Assign a value to Params data member.
Definition at line 61 of file Blast_get_databa_ex_reques_.cpp.
References CBlast4_get_databases_ex_request_Base::m_Params.
Assign a value to Paramset data member.
value | Value to assign |
Definition at line 634 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::m_Paramset, CBlast4_queue_search_request_Base::m_set_State, and value.
Assign a value to Paramset data member.
value | Value to assign |
Definition at line 401 of file Blast_finish_params_reques_.hpp.
References CBlast4_finish_params_request_Base::m_Paramset, CBlast4_finish_params_request_Base::m_set_State, and value.
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Definition at line 641 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::m_Paramset, CBlast4_queue_search_request_Base::m_set_State, and value.
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Definition at line 408 of file Blast_finish_params_reques_.hpp.
References CBlast4_finish_params_request_Base::m_Paramset, CBlast4_finish_params_request_Base::m_set_State, and value.
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Assign a value to Paramset data member.
Definition at line 648 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::IsSetParamset(), CBlast4_queue_search_request_Base::m_Paramset, CBlast4_queue_search_request_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Paramset data member.
Definition at line 415 of file Blast_finish_params_reques_.hpp.
References CBlast4_finish_params_request_Base::IsSetParamset(), CBlast4_finish_params_request_Base::m_Paramset, CBlast4_finish_params_request_Base::m_set_State, and CSerialObject::UnassignedString().
void CBlast4_get_search_results_reply_Base::SetPhi_alignments | ( | CBlast4_get_search_results_reply_Base::TPhi_alignments & | value | ) |
Assign a value to Phi_alignments data member.
value | Reference to value. |
Definition at line 78 of file Blas_get_searc_resul_reply_.cpp.
References CBlast4_get_search_results_reply_Base::m_Phi_alignments, and value.
CBlast4_get_search_results_reply_Base::TPhi_alignments & CBlast4_get_search_results_reply_Base::SetPhi_alignments | ( | void | ) |
Assign a value to Phi_alignments data member.
Definition at line 83 of file Blas_get_searc_resul_reply_.cpp.
References CBlast4_get_search_results_reply_Base::m_Phi_alignments.
Assign a value to Program data member.
value | Value to assign |
Definition at line 215 of file Blast4_program_info_.hpp.
References CBlast4_program_info_Base::m_Program, CBlast4_program_info_Base::m_set_State, and value.
Assign a value to Program data member.
value | Value to assign |
Definition at line 480 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::m_Program, CBlast4_queue_search_request_Base::m_set_State, and value.
Referenced by CExportStrategy::x_Process_BlastOptions().
Assign a value to Program data member.
value | Value to assign |
Definition at line 307 of file Blast_finish_params_reques_.hpp.
References CBlast4_finish_params_request_Base::m_Program, CBlast4_finish_params_request_Base::m_set_State, and value.
Assign a value to Program data member.
value | Value to assign |
Definition at line 539 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::m_Program, CBlast4_get_request_info_reply_Base::m_set_State, and value.
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Definition at line 222 of file Blast4_program_info_.hpp.
References CBlast4_program_info_Base::m_Program, CBlast4_program_info_Base::m_set_State, and value.
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Definition at line 487 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::m_Program, CBlast4_queue_search_request_Base::m_set_State, and value.
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Definition at line 314 of file Blast_finish_params_reques_.hpp.
References CBlast4_finish_params_request_Base::m_Program, CBlast4_finish_params_request_Base::m_set_State, and value.
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Definition at line 546 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::m_Program, CBlast4_get_request_info_reply_Base::m_set_State, and value.
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Assign a value to Program data member.
Definition at line 229 of file Blast4_program_info_.hpp.
References CBlast4_program_info_Base::IsSetProgram(), CBlast4_program_info_Base::m_Program, CBlast4_program_info_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Program data member.
Definition at line 494 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::IsSetProgram(), CBlast4_queue_search_request_Base::m_Program, CBlast4_queue_search_request_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Program data member.
Definition at line 321 of file Blast_finish_params_reques_.hpp.
References CBlast4_finish_params_request_Base::IsSetProgram(), CBlast4_finish_params_request_Base::m_Program, CBlast4_finish_params_request_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Program data member.
Definition at line 553 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::IsSetProgram(), CBlast4_get_request_info_reply_Base::m_Program, CBlast4_get_request_info_reply_Base::m_set_State, and CSerialObject::UnassignedString().
void CBlast4_queue_search_request_Base::SetProgram_options | ( | CBlast4_queue_search_request_Base::TProgram_options & | value | ) |
Assign a value to Program_options data member.
value | Reference to value. |
Definition at line 121 of file Blast4_queue_search_reques_.cpp.
References CBlast4_queue_search_request_Base::m_Program_options, and value.
Referenced by CImportStrategy::GetProgramOptions(), CExportStrategy::x_AddParameterToProgramOptions(), CExportStrategy::x_Process_Query(), and CExportStrategy::x_Process_SearchDb().
void CBlast4_get_request_info_reply_Base::SetProgram_options | ( | CBlast4_get_request_info_reply_Base::TProgram_options & | value | ) |
Assign a value to Program_options data member.
value | Reference to value. |
Definition at line 123 of file Blast_get_reque_info_reply_.cpp.
References CBlast4_get_request_info_reply_Base::m_Program_options, and value.
CBlast4_queue_search_request_Base::TProgram_options & CBlast4_queue_search_request_Base::SetProgram_options | ( | void | ) |
Assign a value to Program_options data member.
Definition at line 126 of file Blast4_queue_search_reques_.cpp.
References CBlast4_queue_search_request_Base::m_Program_options.
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Assign a value to Program_options data member.
Definition at line 740 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::m_Program_options, and CBlast4_get_request_info_reply_Base::ResetProgram_options().
void CBlast4_get_search_results_reply_Base::SetPssm | ( | CBlast4_get_search_results_reply_Base::TPssm & | value | ) |
Assign a value to Pssm data member.
value | Reference to value. |
Definition at line 113 of file Blas_get_searc_resul_reply_.cpp.
References CBlast4_get_search_results_reply_Base::m_Pssm, and value.
void CBlast4_queries_Base::SetPssm | ( | CBlast4_queries_Base::TPssm & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 122 of file Blast4_queries_.cpp.
References CObject::AddReference(), CBlast4_queries_Base::e_Pssm, CBlast4_queries_Base::m_choice, CBlast4_queries_Base::m_object, CBlast4_queries_Base::ResetSelection(), and value.
CBlast4_get_search_results_reply_Base::TPssm & CBlast4_get_search_results_reply_Base::SetPssm | ( | void | ) |
Assign a value to Pssm data member.
Definition at line 118 of file Blas_get_searc_resul_reply_.cpp.
References CBlast4_get_search_results_reply_Base::m_Pssm.
CBlast4_queries_Base::TPssm & CBlast4_queries_Base::SetPssm | ( | void | ) |
Select the variant.
Definition at line 116 of file Blast4_queries_.cpp.
References CBlast4_queries_Base::e_Pssm, eDoNotResetVariant, CBlast4_queries_Base::m_object, and CBlast4_queries_Base::Select().
Referenced by CRemoteBlast::SetQueries(), and CExportStrategy::x_Process_Pssm().
void CBlast4_get_queries_reply_Base::SetQueries | ( | CBlast4_get_queries_reply_Base::TQueries & | value | ) |
Assign a value to Queries data member.
value | Reference to value. |
Definition at line 60 of file Blast4_get_queries_reply_.cpp.
References CBlast4_get_queries_reply_Base::m_Queries, and value.
void CBlast4_queue_search_request_Base::SetQueries | ( | CBlast4_queue_search_request_Base::TQueries & | value | ) |
Assign a value to Queries data member.
value | Reference to value. |
Definition at line 74 of file Blast4_queue_search_reques_.cpp.
References CBlast4_queue_search_request_Base::m_Queries, and value.
Referenced by CImportStrategy::GetQueries(), CExportStrategy::x_Process_Pssm(), and CExportStrategy::x_Process_Query().
void CBlast4_get_request_info_reply_Base::SetQueries | ( | CBlast4_get_request_info_reply_Base::TQueries & | value | ) |
Assign a value to Queries data member.
value | Reference to value. |
Definition at line 95 of file Blast_get_reque_info_reply_.cpp.
References CBlast4_get_request_info_reply_Base::m_Queries, and value.
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Assign a value to Queries data member.
Definition at line 179 of file Blast4_get_queries_reply_.hpp.
References CBlast4_get_queries_reply_Base::m_Queries, and CBlast4_get_queries_reply_Base::ResetQueries().
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Assign a value to Queries data member.
Definition at line 574 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::m_Queries, and CBlast4_queue_search_request_Base::ResetQueries().
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Assign a value to Queries data member.
Definition at line 680 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::m_Queries, and CBlast4_get_request_info_reply_Base::ResetQueries().
Assign a value to Query_id data member.
value | Value to assign |
Definition at line 223 of file Blast4_alignment_for_query_.hpp.
References CBlast4_alignments_for_query_Base::m_Query_id, CBlast4_alignments_for_query_Base::m_set_State, and value.
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Definition at line 230 of file Blast4_alignment_for_query_.hpp.
References CBlast4_alignments_for_query_Base::m_Query_id, CBlast4_alignments_for_query_Base::m_set_State, and value.
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Assign a value to Query_id data member.
Definition at line 237 of file Blast4_alignment_for_query_.hpp.
References CBlast4_alignments_for_query_Base::IsSetQuery_id(), CBlast4_alignments_for_query_Base::m_Query_id, CBlast4_alignments_for_query_Base::m_set_State, and CSerialObject::UnassignedString().
void CBlast4_value_Base::SetQuery_mask | ( | CBlast4_value_Base::TQuery_mask & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 449 of file Blast4_value_.cpp.
References CObject::AddReference(), CBlast4_value_Base::e_Query_mask, CBlast4_value_Base::m_choice, CBlast4_value_Base::m_object, CBlast4_value_Base::ResetSelection(), and value.
CBlast4_value_Base::TQuery_mask & CBlast4_value_Base::SetQuery_mask | ( | void | ) |
Select the variant.
Definition at line 443 of file Blast4_value_.cpp.
References CBlast4_value_Base::e_Query_mask, eDoNotResetVariant, CBlast4_value_Base::m_object, and CBlast4_value_Base::Select().
Referenced by CExportStrategy::x_Process_Query(), and CRemoteBlast::x_SetOneParam().
void CBlast4_reply_body_Base::SetQueue_search | ( | CBlast4_reply_body_Base::TQueue_search & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 374 of file Blast4_reply_body_.cpp.
References CObject::AddReference(), CBlast4_reply_body_Base::e_Queue_search, CBlast4_reply_body_Base::m_choice, CBlast4_reply_body_Base::m_object, CBlast4_reply_body_Base::ResetSelection(), and value.
void CBlast4_request_body_Base::SetQueue_search | ( | CBlast4_request_body_Base::TQueue_search & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 228 of file Blast4_request_body_.cpp.
References CObject::AddReference(), CBlast4_request_body_Base::e_Queue_search, CBlast4_request_body_Base::m_choice, CBlast4_request_body_Base::m_object, CBlast4_request_body_Base::ResetSelection(), and value.
CBlast4_reply_body_Base::TQueue_search & CBlast4_reply_body_Base::SetQueue_search | ( | void | ) |
Select the variant.
Definition at line 368 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::e_Queue_search, eDoNotResetVariant, CBlast4_reply_body_Base::m_object, and CBlast4_reply_body_Base::Select().
Referenced by CBlast4Client_Base::AskQueue_search().
CBlast4_request_body_Base::TQueue_search & CBlast4_request_body_Base::SetQueue_search | ( | void | ) |
Select the variant.
Definition at line 222 of file Blast4_request_body_.cpp.
References CBlast4_request_body_Base::e_Queue_search, eDoNotResetVariant, CBlast4_request_body_Base::m_object, and CBlast4_request_body_Base::Select().
Referenced by CBlast4Client_Base::AskQueue_search(), CExportStrategy::GetSearchStrategy(), and CRemoteBlast::x_GetBlast4SearchRequestBody().
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Select the variant and set its data.
value | Variant data. |
Definition at line 343 of file Blast4_cutoff_.hpp.
References CBlast4_cutoff_Base::e_Raw_score, eDoNotResetVariant, CBlast4_cutoff_Base::m_Raw_score, CBlast4_cutoff_Base::Select(), and value.
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Select the variant.
Definition at line 336 of file Blast4_cutoff_.hpp.
References CBlast4_cutoff_Base::e_Raw_score, eDoNotResetVariant, CBlast4_cutoff_Base::m_Raw_score, and CBlast4_cutoff_Base::Select().
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Select the variant and set its data.
value | Variant data. |
Definition at line 1055 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Real, eDoNotResetVariant, CBlast4_value_Base::m_Real, CBlast4_value_Base::Select(), and value.
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Select the variant.
Definition at line 1048 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Real, eDoNotResetVariant, CBlast4_value_Base::m_Real, and CBlast4_value_Base::Select().
Referenced by CBlast4_parameters::Add().
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Select the variant.
Definition at line 1260 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Real_list, eDoNotResetVariant, CBlast4_value_Base::m_Real_list, and CBlast4_value_Base::Select().
void CBlast4_archive_Base::SetRequest | ( | CBlast4_archive_Base::TRequest & | value | ) |
Assign a value to Request data member.
value | Reference to value. |
Definition at line 62 of file Blast4_archive_.cpp.
References CBlast4_archive_Base::m_Request, and value.
Referenced by PrintErrorArchive().
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Assign a value to Request data member.
Definition at line 263 of file Blast4_archive_.hpp.
References CBlast4_archive_Base::m_Request, and CBlast4_archive_Base::ResetRequest().
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Assign a value to Request_id data member.
value | Value to assign |
Definition at line 222 of file Blas_get_searc_resul_reque_.hpp.
References CBlast4_get_search_results_request_Base::m_Request_id, CBlast4_get_search_results_request_Base::m_set_State, and value.
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Assign a value to Request_id data member.
value | Value to assign |
Definition at line 181 of file Blas_get_searc_statu_reque_.hpp.
References CBlast4_get_search_status_request_Base::m_Request_id, CBlast4_get_search_status_request_Base::m_set_State, and value.
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Assign a value to Request_id data member.
value | Value to assign |
Definition at line 181 of file Blas_get_searc_strat_reque_.hpp.
References CBlast4_get_search_strategy_request_Base::m_Request_id, CBlast4_get_search_strategy_request_Base::m_set_State, and value.
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Assign a value to Request_id data member.
value | Value to assign |
Definition at line 180 of file Blast4_queue_search_reply_.hpp.
References CBlast4_queue_search_reply_Base::m_Request_id, CBlast4_queue_search_reply_Base::m_set_State, and value.
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Assign a value to Request_id data member.
value | Value to assign |
Definition at line 181 of file Blast_get_reque_info_reque_.hpp.
References CBlast4_get_request_info_request_Base::m_Request_id, CBlast4_get_request_info_request_Base::m_set_State, and value.
Referenced by CRemoteBlast::x_GetRequestInfoFromRID().
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Assign a value to Request_id data member.
value | Value to assign |
Definition at line 224 of file Blast_get_searc_info_reply_.hpp.
References CBlast4_get_search_info_reply_Base::m_Request_id, CBlast4_get_search_info_reply_Base::m_set_State, and value.
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Assign a value to Request_id data member.
value | Value to assign |
Definition at line 225 of file Blast_get_searc_info_reque_.hpp.
References CBlast4_get_search_info_request_Base::m_Request_id, CBlast4_get_search_info_request_Base::m_set_State, and value.
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Definition at line 229 of file Blas_get_searc_resul_reque_.hpp.
References CBlast4_get_search_results_request_Base::m_Request_id, CBlast4_get_search_results_request_Base::m_set_State, and value.
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Definition at line 188 of file Blas_get_searc_statu_reque_.hpp.
References CBlast4_get_search_status_request_Base::m_Request_id, CBlast4_get_search_status_request_Base::m_set_State, and value.
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Definition at line 188 of file Blas_get_searc_strat_reque_.hpp.
References CBlast4_get_search_strategy_request_Base::m_Request_id, CBlast4_get_search_strategy_request_Base::m_set_State, and value.
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Definition at line 187 of file Blast4_queue_search_reply_.hpp.
References CBlast4_queue_search_reply_Base::m_Request_id, CBlast4_queue_search_reply_Base::m_set_State, and value.
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Definition at line 188 of file Blast_get_reque_info_reque_.hpp.
References CBlast4_get_request_info_request_Base::m_Request_id, CBlast4_get_request_info_request_Base::m_set_State, and value.
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Definition at line 231 of file Blast_get_searc_info_reply_.hpp.
References CBlast4_get_search_info_reply_Base::m_Request_id, CBlast4_get_search_info_reply_Base::m_set_State, and value.
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Definition at line 232 of file Blast_get_searc_info_reque_.hpp.
References CBlast4_get_search_info_request_Base::m_Request_id, CBlast4_get_search_info_request_Base::m_set_State, and value.
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Assign a value to Request_id data member.
Definition at line 236 of file Blas_get_searc_resul_reque_.hpp.
References CBlast4_get_search_results_request_Base::IsSetRequest_id(), CBlast4_get_search_results_request_Base::m_Request_id, CBlast4_get_search_results_request_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Request_id data member.
Definition at line 195 of file Blas_get_searc_statu_reque_.hpp.
References CBlast4_get_search_status_request_Base::IsSetRequest_id(), CBlast4_get_search_status_request_Base::m_Request_id, CBlast4_get_search_status_request_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Request_id data member.
Definition at line 195 of file Blas_get_searc_strat_reque_.hpp.
References CBlast4_get_search_strategy_request_Base::IsSetRequest_id(), CBlast4_get_search_strategy_request_Base::m_Request_id, CBlast4_get_search_strategy_request_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Request_id data member.
Definition at line 194 of file Blast4_queue_search_reply_.hpp.
References CBlast4_queue_search_reply_Base::IsSetRequest_id(), CBlast4_queue_search_reply_Base::m_Request_id, CBlast4_queue_search_reply_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Request_id data member.
Definition at line 195 of file Blast_get_reque_info_reque_.hpp.
References CBlast4_get_request_info_request_Base::IsSetRequest_id(), CBlast4_get_request_info_request_Base::m_Request_id, CBlast4_get_request_info_request_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Request_id data member.
Definition at line 238 of file Blast_get_searc_info_reply_.hpp.
References CBlast4_get_search_info_reply_Base::IsSetRequest_id(), CBlast4_get_search_info_reply_Base::m_Request_id, CBlast4_get_search_info_reply_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Request_id data member.
Definition at line 239 of file Blast_get_searc_info_reque_.hpp.
References CBlast4_get_search_info_request_Base::IsSetRequest_id(), CBlast4_get_search_info_request_Base::m_Request_id, CBlast4_get_search_info_request_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Residue_type data member.
value | Value to assign |
Definition at line 228 of file Blast4_matrix_id_.hpp.
References CBlast4_matrix_id_Base::m_Residue_type, CBlast4_matrix_id_Base::m_set_State, and value.
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Assign a value to Residue_type data member.
Definition at line 235 of file Blast4_matrix_id_.hpp.
References CBlast4_matrix_id_Base::IsSetResidue_type(), CBlast4_matrix_id_Base::m_Residue_type, CBlast4_matrix_id_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Result_types data member.
value | Value to assign |
Definition at line 276 of file Blas_get_searc_resul_reque_.hpp.
References CBlast4_get_search_results_request_Base::m_Result_types, CBlast4_get_search_results_request_Base::m_set_State, and value.
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Assign a value to Result_types data member.
Definition at line 283 of file Blas_get_searc_resul_reque_.hpp.
References CBlast4_get_search_results_request_Base::IsSetResult_types(), CBlast4_get_search_results_request_Base::m_Result_types, CBlast4_get_search_results_request_Base::m_set_State, and CSerialObject::UnassignedByte().
void CBlast4_archive_Base::SetResults | ( | CBlast4_archive_Base::TResults & | value | ) |
Assign a value to Results data member.
value | Reference to value. |
Definition at line 76 of file Blast4_archive_.cpp.
References CBlast4_archive_Base::m_Results, and value.
Referenced by PrintErrorArchive().
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Assign a value to Results data member.
Definition at line 293 of file Blast4_archive_.hpp.
References CBlast4_archive_Base::m_Results, and CBlast4_archive_Base::ResetResults().
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Assign a value to Search_stats data member.
Definition at line 502 of file Blas_get_searc_resul_reply_.hpp.
References CBlast4_get_search_results_reply_Base::m_Search_stats, and CBlast4_get_search_results_reply_Base::m_set_State.
void CBlast4_value_Base::SetSeq_align | ( | CBlast4_value_Base::TSeq_align & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 333 of file Blast4_value_.cpp.
References CObject::AddReference(), CBlast4_value_Base::e_Seq_align, CBlast4_value_Base::m_choice, CBlast4_value_Base::m_object, CBlast4_value_Base::ResetSelection(), and value.
CBlast4_value_Base::TSeq_align & CBlast4_value_Base::SetSeq_align | ( | void | ) |
Select the variant.
Definition at line 327 of file Blast4_value_.cpp.
References CBlast4_value_Base::e_Seq_align, eDoNotResetVariant, CBlast4_value_Base::m_object, and CBlast4_value_Base::Select().
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Select the variant.
Definition at line 1280 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Seq_align_list, eDoNotResetVariant, CBlast4_value_Base::m_Seq_align_list, and CBlast4_value_Base::Select().
void CBlast4_value_Base::SetSeq_align_set | ( | CBlast4_value_Base::TSeq_align_set & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 427 of file Blast4_value_.cpp.
References CObject::AddReference(), CBlast4_value_Base::e_Seq_align_set, CBlast4_value_Base::m_choice, CBlast4_value_Base::m_object, CBlast4_value_Base::ResetSelection(), and value.
CBlast4_value_Base::TSeq_align_set & CBlast4_value_Base::SetSeq_align_set | ( | void | ) |
Select the variant.
Definition at line 421 of file Blast4_value_.cpp.
References CBlast4_value_Base::e_Seq_align_set, eDoNotResetVariant, CBlast4_value_Base::m_object, and CBlast4_value_Base::Select().
void CBlast4_value_Base::SetSeq_id | ( | CBlast4_value_Base::TSeq_id & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 355 of file Blast4_value_.cpp.
References CObject::AddReference(), CBlast4_value_Base::e_Seq_id, CBlast4_value_Base::m_choice, CBlast4_value_Base::m_object, CBlast4_value_Base::ResetSelection(), and value.
CBlast4_value_Base::TSeq_id & CBlast4_value_Base::SetSeq_id | ( | void | ) |
Select the variant.
Definition at line 349 of file Blast4_value_.cpp.
References CBlast4_value_Base::e_Seq_id, eDoNotResetVariant, CBlast4_value_Base::m_object, and CBlast4_value_Base::Select().
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Select the variant.
Definition at line 1300 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Seq_id_list, eDoNotResetVariant, CBlast4_value_Base::m_Seq_id_list, and CBlast4_value_Base::Select().
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Assign a value to Seq_ids data member.
Definition at line 336 of file Blast4_get_sequenc_request_.hpp.
References CBlast4_get_sequences_request_Base::m_Seq_ids, and CBlast4_get_sequences_request_Base::m_set_State.
Referenced by s_BuildGetSeqRequest().
void CBlast4_value_Base::SetSeq_loc | ( | CBlast4_value_Base::TSeq_loc & | value | ) |
Select the variant and set its data.
value | Reference to the data. |
Definition at line 377 of file Blast4_value_.cpp.
References CObject::AddReference(), CBlast4_value_Base::e_Seq_loc, CBlast4_value_Base::m_choice, CBlast4_value_Base::m_object, CBlast4_value_Base::ResetSelection(), and value.
CBlast4_value_Base::TSeq_loc & CBlast4_value_Base::SetSeq_loc | ( | void | ) |
Select the variant.
Definition at line 371 of file Blast4_value_.cpp.
References CBlast4_value_Base::e_Seq_loc, eDoNotResetVariant, CBlast4_value_Base::m_object, and CBlast4_value_Base::Select().
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Select the variant.
Definition at line 313 of file Blast4_queries_.hpp.
References CBlast4_queries_Base::e_Seq_loc_list, eDoNotResetVariant, CBlast4_queries_Base::m_Seq_loc_list, and CBlast4_queries_Base::Select().
Referenced by BOOST_AUTO_TEST_CASE(), and CExportStrategy::x_Process_Query().
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Select the variant.
Definition at line 339 of file Blast4_subject_.hpp.
References CBlast4_subject_Base::e_Seq_loc_list, eDoNotResetVariant, CBlast4_subject_Base::m_Seq_loc_list, and CBlast4_subject_Base::Select().
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Select the variant.
Definition at line 1320 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Seq_loc_list, eDoNotResetVariant, CBlast4_value_Base::m_Seq_loc_list, and CBlast4_value_Base::Select().
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Assign a value to Seq_locations data member.
Definition at line 252 of file Blast_get_seq_parts_reques_.hpp.
References CBlast4_get_seq_parts_request_Base::m_Seq_locations, and CBlast4_get_seq_parts_request_Base::m_set_State.
Referenced by s_BuildGetSeqPartsRequest().
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Assign a value to Seq_locs data member.
Definition at line 261 of file Blast4_phi_alignments_.hpp.
References CBlast4_phi_alignments_Base::m_Seq_locs, and CBlast4_phi_alignments_Base::m_set_State.
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Assign a value to Seqtech data member.
value | Value to assign |
Definition at line 692 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::m_Seqtech, CBlast4_database_info_Base::m_set_State, and value.
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Assign a value to Seqtech data member.
Definition at line 699 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::IsSetSeqtech(), CBlast4_database_info_Base::m_Seqtech, CBlast4_database_info_Base::m_set_State, and CSerialObject::UnassignedByte().
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Select the variant.
Definition at line 319 of file Blast4_subject_.hpp.
References CBlast4_subject_Base::e_Sequences, eDoNotResetVariant, CBlast4_subject_Base::m_Sequences, and CBlast4_subject_Base::Select().
Referenced by CRemoteBlast::SetSubjectSequences(), and CExportStrategy::x_Process_Subject().
Assign a value to Service data member.
value | Value to assign |
Definition at line 527 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::m_Service, CBlast4_queue_search_request_Base::m_set_State, and value.
Referenced by CExportStrategy::x_Process_BlastOptions(), and CExportStrategy::x_Process_Pssm().
Assign a value to Service data member.
value | Value to assign |
Definition at line 354 of file Blast_finish_params_reques_.hpp.
References CBlast4_finish_params_request_Base::m_Service, CBlast4_finish_params_request_Base::m_set_State, and value.
Assign a value to Service data member.
value | Value to assign |
Definition at line 586 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::m_Service, CBlast4_get_request_info_reply_Base::m_set_State, and value.
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Definition at line 534 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::m_Service, CBlast4_queue_search_request_Base::m_set_State, and value.
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Definition at line 361 of file Blast_finish_params_reques_.hpp.
References CBlast4_finish_params_request_Base::m_Service, CBlast4_finish_params_request_Base::m_set_State, and value.
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Definition at line 593 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::m_Service, CBlast4_get_request_info_reply_Base::m_set_State, and value.
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Assign a value to Service data member.
Definition at line 541 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::IsSetService(), CBlast4_queue_search_request_Base::m_Service, CBlast4_queue_search_request_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Service data member.
Definition at line 368 of file Blast_finish_params_reques_.hpp.
References CBlast4_finish_params_request_Base::IsSetService(), CBlast4_finish_params_request_Base::m_Service, CBlast4_finish_params_request_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Service data member.
Definition at line 600 of file Blast_get_reque_info_reply_.hpp.
References CBlast4_get_request_info_reply_Base::IsSetService(), CBlast4_get_request_info_reply_Base::m_Service, CBlast4_get_request_info_reply_Base::m_set_State, and CSerialObject::UnassignedString().
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inline |
Assign a value to Services data member.
Definition at line 259 of file Blast4_program_info_.hpp.
References CBlast4_program_info_Base::m_Services, and CBlast4_program_info_Base::m_set_State.
void CBlast4_get_search_results_reply_Base::SetSimple_results | ( | CBlast4_get_search_results_reply_Base::TSimple_results & | value | ) |
Assign a value to Simple_results data member.
value | Reference to value. |
Definition at line 130 of file Blas_get_searc_resul_reply_.cpp.
References CBlast4_get_search_results_reply_Base::m_Simple_results, and value.
CBlast4_get_search_results_reply_Base::TSimple_results & CBlast4_get_search_results_reply_Base::SetSimple_results | ( | void | ) |
Assign a value to Simple_results data member.
Definition at line 135 of file Blas_get_searc_resul_reply_.cpp.
References CBlast4_get_search_results_reply_Base::m_Simple_results.
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inline |
Assign a value to Skip_seq_data data member.
value | Value to assign |
Definition at line 374 of file Blast4_get_sequenc_request_.hpp.
References CBlast4_get_sequences_request_Base::m_set_State, CBlast4_get_sequences_request_Base::m_Skip_seq_data, and value.
Referenced by s_BuildGetSeqRequest().
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inline |
Assign a value to Skip_seq_data data member.
Definition at line 381 of file Blast4_get_sequenc_request_.hpp.
References CBlast4_get_sequences_request_Base::IsSetSkip_seq_data(), CBlast4_get_sequences_request_Base::m_set_State, CBlast4_get_sequences_request_Base::m_Skip_seq_data, and CSerialObject::UnassignedByte().
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Assign a value to Start data member.
value | Value to assign |
Definition at line 265 of file Blast4_range_.hpp.
References CBlast4_range_Base::m_set_State, CBlast4_range_Base::m_Start, and value.
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inline |
Assign a value to Start data member.
Definition at line 272 of file Blast4_range_.hpp.
References CBlast4_range_Base::IsSetStart(), CBlast4_range_Base::m_set_State, CBlast4_range_Base::m_Start, and CSerialObject::UnassignedByte().
Assign a value to Status data member.
value | Value to assign |
Definition at line 181 of file Blas_get_searc_statu_reply_.hpp.
References CBlast4_get_search_status_reply_Base::m_set_State, CBlast4_get_search_status_reply_Base::m_Status, and value.
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inline |
Definition at line 188 of file Blas_get_searc_statu_reply_.hpp.
References CBlast4_get_search_status_reply_Base::m_set_State, CBlast4_get_search_status_reply_Base::m_Status, and value.
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Assign a value to Status data member.
Definition at line 195 of file Blas_get_searc_statu_reply_.hpp.
References CBlast4_get_search_status_reply_Base::IsSetStatus(), CBlast4_get_search_status_reply_Base::m_set_State, CBlast4_get_search_status_reply_Base::m_Status, and CSerialObject::UnassignedString().
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inline |
Assign a value to Strand data member.
value | Value to assign |
Definition at line 359 of file Blast4_range_.hpp.
References CBlast4_range_Base::m_set_State, CBlast4_range_Base::m_Strand, and value.
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inline |
Assign a value to Strand data member.
Definition at line 366 of file Blast4_range_.hpp.
References CBlast4_range_Base::IsSetStrand(), CBlast4_range_Base::m_set_State, CBlast4_range_Base::m_Strand, and CSerialObject::UnassignedByte().
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Select the variant and set its data.
value | Variant data. |
Definition at line 1100 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Strand_type, eDoNotResetVariant, CBlast4_value_Base::m_Strand_type, CBlast4_value_Base::Select(), and value.
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Select the variant.
Definition at line 1093 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Strand_type, eDoNotResetVariant, CBlast4_value_Base::m_Strand_type, and CBlast4_value_Base::Select().
Referenced by CBlast4_parameters::Add().
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Select the variant.
Definition at line 1340 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_Strand_type_list, eDoNotResetVariant, CBlast4_value_Base::m_Strand_type_list, and CBlast4_value_Base::Select().
Select the variant and set its data.
value | Variant data. |
Definition at line 387 of file Blast4_value_.cpp.
References CBlast4_value_Base::e_String, eDoNotResetVariant, CBlast4_value_Base::m_string, CBlast4_value_Base::Select(), and value.
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Select the variant.
Definition at line 1120 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_String, eDoNotResetVariant, CBlast4_value_Base::m_string, and CBlast4_value_Base::Select().
Referenced by CBlast4_parameters::Add(), CExportStrategy::x_AddParameterToProgramOptions(), CExportStrategy::x_Process_SearchDb(), and CRemoteBlast::x_SetOneParam().
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Select the variant.
Definition at line 1360 of file Blast4_value_.hpp.
References CBlast4_value_Base::e_String_list, eDoNotResetVariant, CBlast4_value_Base::m_String_list, and CBlast4_value_Base::Select().
void CBlast4_queue_search_request_Base::SetSubject | ( | CBlast4_queue_search_request_Base::TSubject & | value | ) |
Assign a value to Subject data member.
value | Reference to value. |
Definition at line 88 of file Blast4_queue_search_reques_.cpp.
References CBlast4_queue_search_request_Base::m_Subject, and value.
Referenced by CImportStrategy::GetSubject(), CExportStrategy::x_Process_SearchDb(), and CExportStrategy::x_Process_Subject().
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Assign a value to Subject data member.
Definition at line 604 of file Blast4_queue_search_reques_.hpp.
References CBlast4_queue_search_request_Base::m_Subject, and CBlast4_queue_search_request_Base::ResetSubject().
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inline |
Assign a value to Subject_id data member.
value | Value to assign |
Definition at line 433 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::m_set_State, CBlast4_simple_alignment_Base::m_Subject_id, and value.
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inline |
Definition at line 440 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::m_set_State, CBlast4_simple_alignment_Base::m_Subject_id, and value.
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inline |
Assign a value to Subject_id data member.
Definition at line 447 of file Blast4_simple_alignment_.hpp.
References CBlast4_simple_alignment_Base::IsSetSubject_id(), CBlast4_simple_alignment_Base::m_set_State, CBlast4_simple_alignment_Base::m_Subject_id, and CSerialObject::UnassignedString().
void CBlast4_get_request_info_reply_Base::SetSubjects | ( | CBlast4_get_request_info_reply_Base::TSubjects & | value | ) |
Assign a value to Subjects data member.
value | Reference to value. |
Definition at line 150 of file Blast_get_reque_info_reply_.cpp.
References CBlast4_get_request_info_reply_Base::m_Subjects, and value.
CBlast4_get_request_info_reply_Base::TSubjects & CBlast4_get_request_info_reply_Base::SetSubjects | ( | void | ) |
Assign a value to Subjects data member.
Definition at line 155 of file Blast_get_reque_info_reply_.cpp.
References CBlast4_get_request_info_reply_Base::m_Subjects.
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inline |
Assign a value to Target_only data member.
value | Value to assign |
Definition at line 421 of file Blast4_get_sequenc_request_.hpp.
References CBlast4_get_sequences_request_Base::m_set_State, CBlast4_get_sequences_request_Base::m_Target_only, and value.
Referenced by s_BuildGetSeqRequest().
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Assign a value to Target_only data member.
Definition at line 428 of file Blast4_get_sequenc_request_.hpp.
References CBlast4_get_sequences_request_Base::IsSetTarget_only(), CBlast4_get_sequences_request_Base::m_set_State, CBlast4_get_sequences_request_Base::m_Target_only, and CSerialObject::UnassignedByte().
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Assign a value to Taxid data member.
value | Value to assign |
Definition at line 739 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::m_set_State, CBlast4_database_info_Base::m_Taxid, and value.
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inline |
Assign a value to Taxid data member.
Definition at line 746 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::IsSetTaxid(), CBlast4_database_info_Base::m_set_State, CBlast4_database_info_Base::m_Taxid, and CSerialObject::UnassignedByte().
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Assign a value to Total_length data member.
value | Value to assign |
Definition at line 598 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::m_set_State, CBlast4_database_info_Base::m_Total_length, and value.
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Assign a value to Total_length data member.
Definition at line 605 of file Blast4_database_info_.hpp.
References CBlast4_database_info_Base::IsSetTotal_length(), CBlast4_database_info_Base::m_set_State, CBlast4_database_info_Base::m_Total_length, and CSerialObject::UnassignedByte().
Assign a value to Type data member.
value | Value to assign |
Definition at line 268 of file Blast4_parameter_info_.hpp.
References CBlast4_parameter_info_Base::m_set_State, CBlast4_parameter_info_Base::m_Type, and value.
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Definition at line 275 of file Blast4_parameter_info_.hpp.
References CBlast4_parameter_info_Base::m_set_State, CBlast4_parameter_info_Base::m_Type, and value.
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inline |
Assign a value to Type data member.
value | Value to assign |
Definition at line 275 of file Blast4_database_.hpp.
References CBlast4_database_Base::m_set_State, CBlast4_database_Base::m_Type, and value.
Referenced by BOOST_AUTO_TEST_CASE(), CBlastServices::GetDatabaseInfoLegacy(), s_BuildGetSeqPartsRequest(), and s_BuildGetSeqRequest().
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Assign a value to Type data member.
Definition at line 282 of file Blast4_database_.hpp.
References CBlast4_database_Base::IsSetType(), CBlast4_database_Base::m_set_State, CBlast4_database_Base::m_Type, and CSerialObject::UnassignedByte().
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Assign a value to Type data member.
Definition at line 282 of file Blast4_parameter_info_.hpp.
References CBlast4_parameter_info_Base::IsSetType(), CBlast4_parameter_info_Base::m_set_State, CBlast4_parameter_info_Base::m_Type, and CSerialObject::UnassignedString().
void CBlast4_parameter_Base::SetValue | ( | CBlast4_parameter_Base::TValue & | value | ) |
Assign a value to Value data member.
value | Reference to value. |
Definition at line 66 of file Blast4_parameter_.cpp.
References CBlast4_parameter_Base::m_Value, and value.
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inline |
Assign a value to Value data member.
Definition at line 271 of file Blast4_parameter_.hpp.
References CBlast4_parameter_Base::m_Value, and CBlast4_parameter_Base::ResetValue().
void CBlast4_cutoff_Base::ThrowInvalidSelection | ( | E_Choice | index | ) | const |
Throw 'InvalidSelection' exception.
index | Expected selection. |
Definition at line 87 of file Blast4_cutoff_.cpp.
References DIAG_COMPILE_INFO, CBlast4_cutoff_Base::m_choice, and CBlast4_cutoff_Base::sm_SelectionNames.
Referenced by CBlast4_cutoff_Base::CheckSelected().
void CBlast4_queries_Base::ThrowInvalidSelection | ( | E_Choice | index | ) | const |
Throw 'InvalidSelection' exception.
index | Expected selection. |
Definition at line 105 of file Blast4_queries_.cpp.
References DIAG_COMPILE_INFO, CBlast4_queries_Base::m_choice, and CBlast4_queries_Base::sm_SelectionNames.
Referenced by CBlast4_queries_Base::CheckSelected().
void CBlast4_reply_body_Base::ThrowInvalidSelection | ( | E_Choice | index | ) | const |
Throw 'InvalidSelection' exception.
index | Expected selection. |
Definition at line 181 of file Blast4_reply_body_.cpp.
References DIAG_COMPILE_INFO, CBlast4_reply_body_Base::m_choice, and CBlast4_reply_body_Base::sm_SelectionNames.
Referenced by CBlast4Client_Base::Ask(), and CBlast4_reply_body_Base::CheckSelected().
void CBlast4_request_body_Base::ThrowInvalidSelection | ( | E_Choice | index | ) | const |
Throw 'InvalidSelection' exception.
index | Expected selection. |
Definition at line 145 of file Blast4_request_body_.cpp.
References DIAG_COMPILE_INFO, CBlast4_request_body_Base::m_choice, and CBlast4_request_body_Base::sm_SelectionNames.
Referenced by CBlast4_request_body_Base::CheckSelected().
void CBlast4_subject_Base::ThrowInvalidSelection | ( | E_Choice | index | ) | const |
Throw 'InvalidSelection' exception.
index | Expected selection. |
Definition at line 106 of file Blast4_subject_.cpp.
References DIAG_COMPILE_INFO, CBlast4_subject_Base::m_choice, and CBlast4_subject_Base::sm_SelectionNames.
Referenced by CBlast4_subject_Base::CheckSelected().
void CBlast4_value_Base::ThrowInvalidSelection | ( | E_Choice | index | ) | const |
Throw 'InvalidSelection' exception.
index | Expected selection. |
Definition at line 250 of file Blast4_value_.cpp.
References DIAG_COMPILE_INFO, CBlast4_value_Base::m_choice, and CBlast4_value_Base::sm_SelectionNames.
Referenced by CBlast4_value_Base::CheckSelected().
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inline |
Which variant is currently selected.
Definition at line 267 of file Blast4_cutoff_.hpp.
References CBlast4_cutoff_Base::m_choice.
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inline |
Which variant is currently selected.
Definition at line 265 of file Blast4_queries_.hpp.
References CBlast4_queries_Base::m_choice.
Referenced by BOOST_AUTO_TEST_CASE(), and CBlast4_queries::GetNumQueries().
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inline |
Which variant is currently selected.
Definition at line 634 of file Blast4_reply_body_.hpp.
References CBlast4_reply_body_Base::m_choice.
Referenced by CBlast4Client_Base::Ask().
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inline |
Which variant is currently selected.
Definition at line 505 of file Blast4_request_body_.hpp.
References CBlast4_request_body_Base::m_choice.
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inline |
Which variant is currently selected.
Definition at line 257 of file Blast4_subject_.hpp.
References CBlast4_subject_Base::m_choice.
|
inline |
Which variant is currently selected.
Definition at line 907 of file Blast4_value_.hpp.
References CBlast4_value_Base::m_choice.
Referenced by CBlast4Field::Match(), and CBlastOptionsBuilder::x_ProcessOneOption().
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inlineprivate |
Definition at line 165 of file blastclient_.hpp.
References CBlast4_reply_Base::SetBody().
Referenced by CBlast4Client_Base::Ask(), CBlast4Client_Base::AskFinish_params(), CBlast4Client_Base::AskGet_databases(), CBlast4Client_Base::AskGet_databases_ex(), CBlast4Client_Base::AskGet_matrices(), CBlast4Client_Base::AskGet_parameters(), CBlast4Client_Base::AskGet_paramsets(), CBlast4Client_Base::AskGet_programs(), CBlast4Client_Base::AskGet_protocol_info(), CBlast4Client_Base::AskGet_request_info(), CBlast4Client_Base::AskGet_search_info(), CBlast4Client_Base::AskGet_search_results(), CBlast4Client_Base::AskGet_sequence_parts(), CBlast4Client_Base::AskGet_sequences(), CBlast4Client_Base::AskGet_windowmasked_taxids(), and CBlast4Client_Base::AskQueue_search().
CBlast4_alignments_for_query::~CBlast4_alignments_for_query | ( | void | ) |
Definition at line 50 of file Blast4_alignment_for_query.cpp.
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virtual |
Definition at line 87 of file Blast4_alignment_for_query_.cpp.
CBlast4_archive::~CBlast4_archive | ( | void | ) |
Definition at line 50 of file Blast4_archive.cpp.
|
virtual |
Definition at line 117 of file Blast4_archive_.cpp.
CBlast4_cutoff::~CBlast4_cutoff | ( | void | ) |
Definition at line 50 of file Blast4_cutoff.cpp.
|
virtual |
Definition at line 112 of file Blast4_cutoff_.cpp.
References CBlast4_cutoff_Base::Reset().
|
virtual |
Definition at line 81 of file Blast4_database_.cpp.
CBlast4_database_info::~CBlast4_database_info | ( | void | ) |
Definition at line 50 of file Blast4_database_info.cpp.
|
virtual |
Definition at line 135 of file Blast4_database_info_.cpp.
CBlast4_error::~CBlast4_error | ( | void | ) |
Definition at line 50 of file Blast4_error.cpp.
|
virtual |
Definition at line 81 of file Blast4_error_.cpp.
CBlast4_finish_params_request::~CBlast4_finish_params_request | ( | void | ) |
Definition at line 50 of file Blast_finish_params_reques.cpp.
|
virtual |
Definition at line 114 of file Blast_finish_params_reques_.cpp.
CBlast4_get_databases_ex_reply::~CBlast4_get_databases_ex_reply | ( | void | ) |
Definition at line 50 of file Blast4_get_databa_ex_reply.cpp.
|
virtual |
Definition at line 74 of file Blast4_get_databa_ex_reply_.cpp.
CBlast4_get_databases_ex_request::~CBlast4_get_databases_ex_request | ( | void | ) |
Definition at line 50 of file Blast_get_databa_ex_reques.cpp.
|
virtual |
Definition at line 90 of file Blast_get_databa_ex_reques_.cpp.
CBlast4_get_databases_reply::~CBlast4_get_databases_reply | ( | void | ) |
Definition at line 50 of file Blast4_get_databases_reply.cpp.
|
virtual |
Definition at line 74 of file Blast4_get_databases_reply_.cpp.
CBlast4_get_matrices_reply::~CBlast4_get_matrices_reply | ( | void | ) |
Definition at line 50 of file Blast4_get_matrices_reply.cpp.
|
virtual |
Definition at line 74 of file Blast4_get_matrices_reply_.cpp.
CBlast4_get_parameters_reply::~CBlast4_get_parameters_reply | ( | void | ) |
Definition at line 50 of file Blast4_get_parameter_reply.cpp.
|
virtual |
Definition at line 74 of file Blast4_get_parameter_reply_.cpp.
CBlast4_get_paramsets_reply::~CBlast4_get_paramsets_reply | ( | void | ) |
Definition at line 50 of file Blast4_get_paramsets_reply.cpp.
|
virtual |
Definition at line 74 of file Blast4_get_paramsets_reply_.cpp.
CBlast4_get_programs_reply::~CBlast4_get_programs_reply | ( | void | ) |
Definition at line 50 of file Blast4_get_programs_reply.cpp.
|
virtual |
Definition at line 74 of file Blast4_get_programs_reply_.cpp.
CBlast4_get_queries_reply::~CBlast4_get_queries_reply | ( | void | ) |
Definition at line 50 of file Blast4_get_queries_reply.cpp.
|
virtual |
Definition at line 90 of file Blast4_get_queries_reply_.cpp.
CBlast4_get_request_info_reply::~CBlast4_get_request_info_reply | ( | void | ) |
Definition at line 50 of file Blast_get_reque_info_reply.cpp.
|
virtual |
Definition at line 206 of file Blast_get_reque_info_reply_.cpp.
CBlast4_get_request_info_request::~CBlast4_get_request_info_request | ( | void | ) |
Definition at line 50 of file Blast_get_reque_info_reque.cpp.
|
virtual |
Definition at line 78 of file Blast_get_reque_info_reque_.cpp.
CBlast4_get_search_info_reply::~CBlast4_get_search_info_reply | ( | void | ) |
Definition at line 50 of file Blast_get_searc_info_reply.cpp.
|
virtual |
Definition at line 98 of file Blast_get_searc_info_reply_.cpp.
CBlast4_get_search_info_request::~CBlast4_get_search_info_request | ( | void | ) |
Definition at line 50 of file Blast_get_searc_info_reque.cpp.
|
virtual |
Definition at line 98 of file Blast_get_searc_info_reque_.cpp.
CBlast4_get_search_results_reply::~CBlast4_get_search_results_reply | ( | void | ) |
Definition at line 50 of file Blas_get_searc_resul_reply.cpp.
|
virtual |
Definition at line 176 of file Blas_get_searc_resul_reply_.cpp.
CBlast4_get_search_results_request::~CBlast4_get_search_results_request | ( | void | ) |
Definition at line 50 of file Blas_get_searc_resul_reque.cpp.
|
virtual |
Definition at line 81 of file Blas_get_searc_resul_reque_.cpp.
CBlast4_get_search_status_reply::~CBlast4_get_search_status_reply | ( | void | ) |
Definition at line 50 of file Blas_get_searc_statu_reply.cpp.
|
virtual |
Definition at line 78 of file Blas_get_searc_statu_reply_.cpp.
CBlast4_get_search_status_request::~CBlast4_get_search_status_request | ( | void | ) |
Definition at line 50 of file Blas_get_searc_statu_reque.cpp.
|
virtual |
Definition at line 78 of file Blas_get_searc_statu_reque_.cpp.
CBlast4_get_search_strategy_request::~CBlast4_get_search_strategy_request | ( | void | ) |
Definition at line 50 of file Blas_get_searc_strat_reque.cpp.
|
virtual |
Definition at line 78 of file Blas_get_searc_strat_reque_.cpp.
CBlast4_get_seq_parts_reply::~CBlast4_get_seq_parts_reply | ( | void | ) |
Definition at line 50 of file Blast4_get_seq_parts_reply.cpp.
|
virtual |
Definition at line 74 of file Blast4_get_seq_parts_reply_.cpp.
CBlast4_get_seq_parts_request::~CBlast4_get_seq_parts_request | ( | void | ) |
Definition at line 50 of file Blast_get_seq_parts_reques.cpp.
|
virtual |
Definition at line 99 of file Blast_get_seq_parts_reques_.cpp.
CBlast4_get_sequences_reply::~CBlast4_get_sequences_reply | ( | void | ) |
Definition at line 50 of file Blast4_get_sequences_reply.cpp.
|
virtual |
Definition at line 74 of file Blast4_get_sequences_reply_.cpp.
CBlast4_get_sequences_request::~CBlast4_get_sequences_request | ( | void | ) |
Definition at line 50 of file Blast4_get_sequenc_request.cpp.
|
virtual |
Definition at line 104 of file Blast4_get_sequenc_request_.cpp.
CBlast4_get_windowmasked_taxids_reply::~CBlast4_get_windowmasked_taxids_reply | ( | void | ) |
Definition at line 50 of file Blas_get_windo_taxid_reply.cpp.
|
virtual |
Definition at line 73 of file Blas_get_windo_taxid_reply_.cpp.
CBlast4_ka_block::~CBlast4_ka_block | ( | void | ) |
Definition at line 50 of file Blast4_ka_block.cpp.
|
virtual |
Definition at line 79 of file Blast4_ka_block_.cpp.
CBlast4_mask::~CBlast4_mask | ( | void | ) |
Definition at line 50 of file Blast4_mask.cpp.
|
virtual |
Definition at line 82 of file Blast4_mask_.cpp.
CBlast4_matrix_id::~CBlast4_matrix_id | ( | void | ) |
Definition at line 50 of file Blast4_matrix_id.cpp.
|
virtual |
Definition at line 81 of file Blast4_matrix_id_.cpp.
CBlast4_parameter::~CBlast4_parameter | ( | void | ) |
Definition at line 50 of file Blast4_parameter.cpp.
|
virtual |
Definition at line 98 of file Blast4_parameter_.cpp.
CBlast4_parameter_info::~CBlast4_parameter_info | ( | void | ) |
Definition at line 50 of file Blast4_parameter_info.cpp.
|
virtual |
Definition at line 86 of file Blast4_parameter_info_.cpp.
|
virtual |
Definition at line 74 of file Blast4_parameters_.cpp.
CBlast4_phi_alignments::~CBlast4_phi_alignments | ( | void | ) |
Definition at line 50 of file Blast4_phi_alignments.cpp.
|
virtual |
Definition at line 82 of file Blast4_phi_alignments_.cpp.
CBlast4_program_info::~CBlast4_program_info | ( | void | ) |
Definition at line 50 of file Blast4_program_info.cpp.
|
virtual |
Definition at line 86 of file Blast4_program_info_.cpp.
|
virtual |
Definition at line 175 of file Blast4_queries_.cpp.
References CBlast4_queries_Base::Reset().
CBlast4_queue_search_reply::~CBlast4_queue_search_reply | ( | void | ) |
Definition at line 50 of file Blast4_queue_search_reply.cpp.
|
virtual |
Definition at line 78 of file Blast4_queue_search_reply_.cpp.
CBlast4_queue_search_request::~CBlast4_queue_search_request | ( | void | ) |
Definition at line 50 of file Blast4_queue_search_reques.cpp.
|
virtual |
Definition at line 190 of file Blast4_queue_search_reques_.cpp.
|
virtual |
Definition at line 77 of file Blast4_range_.cpp.
CBlast4_reply::~CBlast4_reply | ( | void | ) |
Definition at line 50 of file Blast4_reply.cpp.
|
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Definition at line 99 of file Blast4_reply_.cpp.
CBlast4_reply_body::~CBlast4_reply_body | ( | void | ) |
Definition at line 50 of file Blast4_reply_body.cpp.
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Definition at line 572 of file Blast4_reply_body_.cpp.
References CBlast4_reply_body_Base::Reset().
CBlast4_request::~CBlast4_request | ( | void | ) |
Definition at line 50 of file Blast4_request.cpp.
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Definition at line 98 of file Blast4_request_.cpp.
CBlast4_request_body::~CBlast4_request_body | ( | void | ) |
Definition at line 50 of file Blast4_request_body.cpp.
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Definition at line 381 of file Blast4_request_body_.cpp.
References CBlast4_request_body_Base::Reset().
CBlast4_seq_part_data::~CBlast4_seq_part_data | ( | void | ) |
Definition at line 50 of file Blast4_seq_part_data.cpp.
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Definition at line 108 of file Blast4_seq_part_data_.cpp.
CBlast4_simple_alignment::~CBlast4_simple_alignment | ( | void | ) |
Definition at line 50 of file Blast4_simple_alignment.cpp.
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Definition at line 124 of file Blast4_simple_alignment_.cpp.
CBlast4_simple_results::~CBlast4_simple_results | ( | void | ) |
Definition at line 50 of file Blast4_simple_results.cpp.
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Definition at line 79 of file Blast4_simple_results_.cpp.
CBlast4_subject::~CBlast4_subject | ( | void | ) |
Definition at line 50 of file Blast4_subject.cpp.
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Definition at line 138 of file Blast4_subject_.cpp.
References CBlast4_subject_Base::Reset().
CBlast4_task_info::~CBlast4_task_info | ( | void | ) |
Definition at line 50 of file Blast4_task_info.cpp.
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Definition at line 86 of file Blast4_task_info_.cpp.
CBlast4_value::~CBlast4_value | ( | void | ) |
Definition at line 50 of file Blast4_value.cpp.
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Definition at line 504 of file Blast4_value_.cpp.
References CBlast4_value_Base::Reset().
CBlast4Client::~CBlast4Client | ( | void | ) |
Definition at line 50 of file blastclient.cpp.
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Definition at line 281 of file blastclient_.cpp.
union { ... } |
union { ... } |
union { ... } |
union { ... } |
union { ... } |
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Definition at line 444 of file Blast4_queue_search_reques_.hpp.
Referenced by CBlast4_queue_search_request_Base::GetAlgorithm_options(), CBlast4_queue_search_request_Base::IsSetAlgorithm_options(), CBlast4_queue_search_request_Base::ResetAlgorithm_options(), and CBlast4_queue_search_request_Base::SetAlgorithm_options().
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Definition at line 472 of file Blast_get_reque_info_reply_.hpp.
Referenced by CBlast4_get_request_info_reply_Base::GetAlgorithm_options(), CBlast4_get_request_info_reply_Base::IsSetAlgorithm_options(), CBlast4_get_request_info_reply_Base::ResetAlgorithm_options(), and CBlast4_get_request_info_reply_Base::SetAlgorithm_options().
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Definition at line 373 of file Blas_get_searc_resul_reply_.hpp.
Referenced by CBlast4_get_search_results_reply_Base::GetAlignments(), CBlast4_get_search_results_reply_Base::IsSetAlignments(), CBlast4_get_search_results_reply_Base::ResetAlignments(), and CBlast4_get_search_results_reply_Base::SetAlignments().
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Definition at line 189 of file Blast4_alignment_for_query_.hpp.
Referenced by CBlast4_alignments_for_query_Base::GetAlignments(), CBlast4_alignments_for_query_Base::ResetAlignments(), and CBlast4_alignments_for_query_Base::SetAlignments().
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Definition at line 145 of file Blast4_simple_results_.hpp.
Referenced by CBlast4_simple_results_Base::GetAll_alignments(), CBlast4_simple_results_Base::ResetAll_alignments(), and CBlast4_simple_results_Base::SetAll_alignments().
TBig_integer CBlast4_value_Base::m_Big_integer |
Definition at line 875 of file Blast4_value_.hpp.
Referenced by CBlast4_value_Base::DoSelect(), CBlast4_value_Base::GetBig_integer(), and CBlast4_value_Base::SetBig_integer().
TBig_integer { ... } ::m_Big_integer |
Definition at line 875 of file Blast4_value_.hpp.
NCBI_NS_NCBI::CUnionBuffer<TBig_integer_list> CBlast4_value_Base::m_Big_integer_list |
Definition at line 880 of file Blast4_value_.hpp.
Referenced by CBlast4_value_Base::DoSelect(), CBlast4_value_Base::GetBig_integer_list(), CBlast4_value_Base::ResetSelection(), and CBlast4_value_Base::SetBig_integer_list().
NCBI_NS_NCBI::CUnionBuffer<TBig_integer_list> { ... } ::m_Big_integer_list |
Definition at line 880 of file Blast4_value_.hpp.
NCBI_NS_NCBI::CUnionBuffer<TBioseq_list> CBlast4_value_Base::m_Bioseq_list |
Definition at line 881 of file Blast4_value_.hpp.
Referenced by CBlast4_value_Base::DoSelect(), CBlast4_value_Base::GetBioseq_list(), CBlast4_value_Base::ResetSelection(), and CBlast4_value_Base::SetBioseq_list().
NCBI_NS_NCBI::CUnionBuffer<TBioseq_list> { ... } ::m_Bioseq_list |
Definition at line 881 of file Blast4_value_.hpp.
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Definition at line 395 of file Blast4_simple_alignment_.hpp.
Referenced by CBlast4_simple_alignment_Base::GetBit_score(), CBlast4_simple_alignment_Base::ResetBit_score(), and CBlast4_simple_alignment_Base::SetBit_score().
Definition at line 223 of file Blast4_reply_.hpp.
Referenced by CBlast4_reply_Base::GetBody(), CBlast4_reply_Base::IsSetBody(), CBlast4_reply_Base::ResetBody(), and CBlast4_reply_Base::SetBody().
Definition at line 232 of file Blast4_request_.hpp.
Referenced by CBlast4_request_Base::GetBody(), CBlast4_request_Base::IsSetBody(), CBlast4_request_Base::ResetBody(), and CBlast4_request_Base::SetBody().
TBoolean CBlast4_value_Base::m_Boolean |
Definition at line 876 of file Blast4_value_.hpp.
Referenced by CBlast4_value_Base::DoSelect(), CBlast4_value_Base::GetBoolean(), and CBlast4_value_Base::SetBoolean().
TBoolean { ... } ::m_Boolean |
Definition at line 876 of file Blast4_value_.hpp.
NCBI_NS_NCBI::CUnionBuffer<TBoolean_list> CBlast4_value_Base::m_Boolean_list |
Definition at line 882 of file Blast4_value_.hpp.
Referenced by CBlast4_value_Base::DoSelect(), CBlast4_value_Base::GetBoolean_list(), CBlast4_value_Base::ResetSelection(), and CBlast4_value_Base::SetBoolean_list().
NCBI_NS_NCBI::CUnionBuffer<TBoolean_list> { ... } ::m_Boolean_list |
Definition at line 882 of file Blast4_value_.hpp.
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Definition at line 245 of file Blast4_cutoff_.hpp.
Referenced by CBlast4_cutoff_Base::CheckSelected(), CBlast4_cutoff_Base::DoSelect(), CBlast4_cutoff_Base::IsE_value(), CBlast4_cutoff_Base::IsRaw_score(), CBlast4_cutoff_Base::Reset(), CBlast4_cutoff_Base::ResetSelection(), CBlast4_cutoff_Base::ThrowInvalidSelection(), and CBlast4_cutoff_Base::Which().
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Definition at line 243 of file Blast4_queries_.hpp.
Referenced by CBlast4_queries_Base::CheckSelected(), CBlast4_queries_Base::DoSelect(), CBlast4_queries_Base::IsBioseq_set(), CBlast4_queries_Base::IsPssm(), CBlast4_queries_Base::IsSeq_loc_list(), CBlast4_queries_Base::Reset(), CBlast4_queries_Base::ResetSelection(), CBlast4_queries_Base::SetBioseq_set(), CBlast4_queries_Base::SetPssm(), CBlast4_queries_Base::ThrowInvalidSelection(), and CBlast4_queries_Base::Which().
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Definition at line 615 of file Blast4_reply_body_.hpp.
Referenced by CBlast4_reply_body_Base::CheckSelected(), CBlast4_reply_body_Base::DoSelect(), CBlast4_reply_body_Base::IsFinish_params(), CBlast4_reply_body_Base::IsGet_databases(), CBlast4_reply_body_Base::IsGet_databases_ex(), CBlast4_reply_body_Base::IsGet_matrices(), CBlast4_reply_body_Base::IsGet_parameters(), CBlast4_reply_body_Base::IsGet_paramsets(), CBlast4_reply_body_Base::IsGet_programs(), CBlast4_reply_body_Base::IsGet_protocol_info(), CBlast4_reply_body_Base::IsGet_queries(), CBlast4_reply_body_Base::IsGet_request_info(), CBlast4_reply_body_Base::IsGet_search_info(), CBlast4_reply_body_Base::IsGet_search_results(), CBlast4_reply_body_Base::IsGet_sequence_parts(), CBlast4_reply_body_Base::IsGet_sequences(), CBlast4_reply_body_Base::IsGet_windowmasked_taxids(), CBlast4_reply_body_Base::IsQueue_search(), CBlast4_reply_body_Base::Reset(), CBlast4_reply_body_Base::ResetSelection(), CBlast4_reply_body_Base::SetFinish_params(), CBlast4_reply_body_Base::SetGet_databases(), CBlast4_reply_body_Base::SetGet_databases_ex(), CBlast4_reply_body_Base::SetGet_matrices(), CBlast4_reply_body_Base::SetGet_parameters(), CBlast4_reply_body_Base::SetGet_paramsets(), CBlast4_reply_body_Base::SetGet_programs(), CBlast4_reply_body_Base::SetGet_protocol_info(), CBlast4_reply_body_Base::SetGet_queries(), CBlast4_reply_body_Base::SetGet_request_info(), CBlast4_reply_body_Base::SetGet_search_info(), CBlast4_reply_body_Base::SetGet_search_results(), CBlast4_reply_body_Base::SetGet_sequence_parts(), CBlast4_reply_body_Base::SetGet_sequences(), CBlast4_reply_body_Base::SetGet_windowmasked_taxids(), CBlast4_reply_body_Base::SetQueue_search(), CBlast4_reply_body_Base::ThrowInvalidSelection(), and CBlast4_reply_body_Base::Which().
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Definition at line 484 of file Blast4_request_body_.hpp.
Referenced by CBlast4_request_body_Base::CheckSelected(), CBlast4_request_body_Base::DoSelect(), CBlast4_request_body_Base::IsFinish_params(), CBlast4_request_body_Base::IsGet_databases(), CBlast4_request_body_Base::IsGet_databases_ex(), CBlast4_request_body_Base::IsGet_matrices(), CBlast4_request_body_Base::IsGet_parameters(), CBlast4_request_body_Base::IsGet_paramsets(), CBlast4_request_body_Base::IsGet_programs(), CBlast4_request_body_Base::IsGet_protocol_info(), CBlast4_request_body_Base::IsGet_request_info(), CBlast4_request_body_Base::IsGet_search_info(), CBlast4_request_body_Base::IsGet_search_results(), CBlast4_request_body_Base::IsGet_sequence_parts(), CBlast4_request_body_Base::IsGet_sequences(), CBlast4_request_body_Base::IsGet_windowmasked_taxids(), CBlast4_request_body_Base::IsQueue_search(), CBlast4_request_body_Base::Reset(), CBlast4_request_body_Base::ResetSelection(), CBlast4_request_body_Base::SetFinish_params(), CBlast4_request_body_Base::SetGet_databases_ex(), CBlast4_request_body_Base::SetGet_protocol_info(), CBlast4_request_body_Base::SetGet_request_info(), CBlast4_request_body_Base::SetGet_search_info(), CBlast4_request_body_Base::SetGet_search_results(), CBlast4_request_body_Base::SetGet_sequence_parts(), CBlast4_request_body_Base::SetGet_sequences(), CBlast4_request_body_Base::SetQueue_search(), CBlast4_request_body_Base::ThrowInvalidSelection(), and CBlast4_request_body_Base::Which().
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Definition at line 233 of file Blast4_subject_.hpp.
Referenced by CBlast4_subject_Base::CheckSelected(), CBlast4_subject_Base::DoSelect(), CBlast4_subject_Base::IsDatabase(), CBlast4_subject_Base::IsSeq_loc_list(), CBlast4_subject_Base::IsSequences(), CBlast4_subject_Base::Reset(), CBlast4_subject_Base::ResetSelection(), CBlast4_subject_Base::ThrowInvalidSelection(), and CBlast4_subject_Base::Which().
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Definition at line 868 of file Blast4_value_.hpp.
Referenced by CBlast4_value_Base::CheckSelected(), CBlast4_value_Base::DoSelect(), CBlast4_value_Base::IsBig_integer(), CBlast4_value_Base::IsBig_integer_list(), CBlast4_value_Base::IsBioseq(), CBlast4_value_Base::IsBioseq_list(), CBlast4_value_Base::IsBioseq_set(), CBlast4_value_Base::IsBoolean(), CBlast4_value_Base::IsBoolean_list(), CBlast4_value_Base::IsCutoff(), CBlast4_value_Base::IsCutoff_list(), CBlast4_value_Base::IsInteger(), CBlast4_value_Base::IsInteger_list(), CBlast4_value_Base::IsMatrix(), CBlast4_value_Base::IsMatrix_list(), CBlast4_value_Base::IsQuery_mask(), CBlast4_value_Base::IsReal(), CBlast4_value_Base::IsReal_list(), CBlast4_value_Base::IsSeq_align(), CBlast4_value_Base::IsSeq_align_list(), CBlast4_value_Base::IsSeq_align_set(), CBlast4_value_Base::IsSeq_id(), CBlast4_value_Base::IsSeq_id_list(), CBlast4_value_Base::IsSeq_loc(), CBlast4_value_Base::IsSeq_loc_list(), CBlast4_value_Base::IsStrand_type(), CBlast4_value_Base::IsStrand_type_list(), CBlast4_value_Base::IsString(), CBlast4_value_Base::IsString_list(), CBlast4_value_Base::Reset(), CBlast4_value_Base::ResetSelection(), CBlast4_value_Base::SetBioseq(), CBlast4_value_Base::SetBioseq_set(), CBlast4_value_Base::SetCutoff(), CBlast4_value_Base::SetMatrix(), CBlast4_value_Base::SetQuery_mask(), CBlast4_value_Base::SetSeq_align(), CBlast4_value_Base::SetSeq_align_set(), CBlast4_value_Base::SetSeq_id(), CBlast4_value_Base::SetSeq_loc(), CBlast4_value_Base::ThrowInvalidSelection(), and CBlast4_value_Base::Which().
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Definition at line 226 of file Blast4_error_.hpp.
Referenced by CBlast4_error_Base::GetCode(), CBlast4_error_Base::ResetCode(), and CBlast4_error_Base::SetCode().
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Definition at line 470 of file Blast_get_reque_info_reply_.hpp.
Referenced by CBlast4_get_request_info_reply_Base::GetCreated_by(), CBlast4_get_request_info_reply_Base::ResetCreated_by(), and CBlast4_get_request_info_reply_Base::SetCreated_by().
NCBI_NS_NCBI::CUnionBuffer<TCutoff_list> CBlast4_value_Base::m_Cutoff_list |
Definition at line 883 of file Blast4_value_.hpp.
Referenced by CBlast4_value_Base::DoSelect(), CBlast4_value_Base::GetCutoff_list(), CBlast4_value_Base::ResetSelection(), and CBlast4_value_Base::SetCutoff_list().
NCBI_NS_NCBI::CUnionBuffer<TCutoff_list> { ... } ::m_Cutoff_list |
Definition at line 883 of file Blast4_value_.hpp.
Definition at line 135 of file Blas_get_windo_taxid_reply_.hpp.
Referenced by CBlast4_get_windowmasked_taxids_reply_Base::Get(), CBlast4_get_windowmasked_taxids_reply_Base::Reset(), and CBlast4_get_windowmasked_taxids_reply_Base::Set().
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Definition at line 139 of file Blast4_get_databa_ex_reply_.hpp.
Referenced by CBlast4_get_databases_ex_reply_Base::Get(), CBlast4_get_databases_ex_reply_Base::Reset(), and CBlast4_get_databases_ex_reply_Base::Set().
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Definition at line 139 of file Blast4_get_databases_reply_.hpp.
Referenced by CBlast4_get_databases_reply_Base::Get(), CBlast4_get_databases_reply_Base::Reset(), and CBlast4_get_databases_reply_Base::Set().
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Definition at line 139 of file Blast4_get_matrices_reply_.hpp.
Referenced by CBlast4_get_matrices_reply_Base::Get(), CBlast4_get_matrices_reply_Base::Reset(), and CBlast4_get_matrices_reply_Base::Set().
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Definition at line 139 of file Blast4_get_parameter_reply_.hpp.
Referenced by CBlast4_get_parameters_reply_Base::Get(), CBlast4_get_parameters_reply_Base::Reset(), and CBlast4_get_parameters_reply_Base::Set().
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Definition at line 142 of file Blast4_get_paramsets_reply_.hpp.
Referenced by CBlast4_get_paramsets_reply_Base::Get(), CBlast4_get_paramsets_reply_Base::Reset(), and CBlast4_get_paramsets_reply_Base::Set().
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Definition at line 139 of file Blast4_get_programs_reply_.hpp.
Referenced by CBlast4_get_programs_reply_Base::Get(), CBlast4_get_programs_reply_Base::Reset(), and CBlast4_get_programs_reply_Base::Set().
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Definition at line 139 of file Blast4_get_seq_parts_reply_.hpp.
Referenced by CBlast4_get_seq_parts_reply_Base::Get(), CBlast4_get_seq_parts_reply_Base::Reset(), and CBlast4_get_seq_parts_reply_Base::Set().
Definition at line 139 of file Blast4_get_sequences_reply_.hpp.
Referenced by CBlast4_get_sequences_reply_Base::Get(), CBlast4_get_sequences_reply_Base::Reset(), and CBlast4_get_sequences_reply_Base::Set().
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Definition at line 139 of file Blast4_parameters_.hpp.
Referenced by CBlast4_parameters_Base::Get(), CBlast4_parameters_Base::Reset(), and CBlast4_parameters_Base::Set().
Definition at line 190 of file Blast4_seq_part_data_.hpp.
Referenced by CBlast4_seq_part_data_Base::GetData(), CBlast4_seq_part_data_Base::IsSetData(), CBlast4_seq_part_data_Base::ResetData(), and CBlast4_seq_part_data_Base::SetData().
Definition at line 426 of file Blast4_database_info_.hpp.
Referenced by CBlast4_database_info_Base::GetDatabase(), CBlast4_database_info_Base::IsSetDatabase(), CBlast4_database_info_Base::ResetDatabase(), and CBlast4_database_info_Base::SetDatabase().
Definition at line 150 of file blastclient_.hpp.
Referenced by CBlast4Client_Base::Ask(), CBlast4Client_Base::GetDefaultRequest(), and CBlast4Client_Base::SetDefaultRequest().
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Definition at line 427 of file Blast4_database_info_.hpp.
Referenced by CBlast4_database_info_Base::GetDescription(), CBlast4_database_info_Base::ResetDescription(), and CBlast4_database_info_Base::SetDescription().
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Definition at line 190 of file Blast4_task_info_.hpp.
Referenced by CBlast4_task_info_Base::GetDocumentation(), CBlast4_task_info_Base::ResetDocumentation(), and CBlast4_task_info_Base::SetDocumentation().
void* CBlast4_subject_Base::m_dummy_pointer_for_alignment |
Definition at line 243 of file Blast4_subject_.hpp.
void* { ... } ::m_dummy_pointer_for_alignment |
Definition at line 243 of file Blast4_subject_.hpp.
TE_value CBlast4_cutoff_Base::m_E_value |
Definition at line 252 of file Blast4_cutoff_.hpp.
Referenced by CBlast4_cutoff_Base::DoSelect(), CBlast4_cutoff_Base::GetE_value(), and CBlast4_cutoff_Base::SetE_value().
TE_value { ... } ::m_E_value |
Definition at line 252 of file Blast4_cutoff_.hpp.
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Definition at line 394 of file Blast4_simple_alignment_.hpp.
Referenced by CBlast4_simple_alignment_Base::GetE_value(), CBlast4_simple_alignment_Base::ResetE_value(), and CBlast4_simple_alignment_Base::SetE_value().
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Definition at line 223 of file Blast4_range_.hpp.
Referenced by CBlast4_range_Base::GetEnd(), CBlast4_range_Base::ResetEnd(), and CBlast4_range_Base::SetEnd().
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Definition at line 222 of file Blast4_reply_.hpp.
Referenced by CBlast4_reply_Base::GetErrors(), CBlast4_reply_Base::ResetErrors(), and CBlast4_reply_Base::SetErrors().
Definition at line 433 of file Blast4_database_info_.hpp.
Referenced by CBlast4_database_info_Base::GetExtended(), CBlast4_database_info_Base::IsSetExtended(), CBlast4_database_info_Base::ResetExtended(), and CBlast4_database_info_Base::SetExtended().
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Definition at line 446 of file Blast4_queue_search_reques_.hpp.
Referenced by CBlast4_queue_search_request_Base::GetFormat_options(), CBlast4_queue_search_request_Base::IsSetFormat_options(), CBlast4_queue_search_request_Base::ResetFormat_options(), and CBlast4_queue_search_request_Base::SetFormat_options().
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Definition at line 474 of file Blast_get_reque_info_reply_.hpp.
Referenced by CBlast4_get_request_info_reply_Base::GetFormat_options(), CBlast4_get_request_info_reply_Base::IsSetFormat_options(), CBlast4_get_request_info_reply_Base::ResetFormat_options(), and CBlast4_get_request_info_reply_Base::SetFormat_options().
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Definition at line 198 of file Blast4_mask_.hpp.
Referenced by CBlast4_mask_Base::GetFrame(), CBlast4_mask_Base::ResetFrame(), and CBlast4_mask_Base::SetFrame().
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Definition at line 399 of file Blast4_simple_alignment_.hpp.
Referenced by CBlast4_simple_alignment_Base::GetFull_subject_range(), CBlast4_simple_alignment_Base::IsSetFull_subject_range(), CBlast4_simple_alignment_Base::ResetFull_subject_range(), and CBlast4_simple_alignment_Base::SetFull_subject_range().
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Definition at line 261 of file Blast4_ka_block_.hpp.
Referenced by CBlast4_ka_block_Base::GetGapped(), CBlast4_ka_block_Base::ResetGapped(), and CBlast4_ka_block_Base::SetGapped().
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Definition at line 260 of file Blast4_ka_block_.hpp.
Referenced by CBlast4_ka_block_Base::GetH(), CBlast4_ka_block_Base::ResetH(), and CBlast4_ka_block_Base::SetH().
Definition at line 189 of file Blast4_seq_part_data_.hpp.
Referenced by CBlast4_seq_part_data_Base::GetId(), CBlast4_seq_part_data_Base::IsSetId(), CBlast4_seq_part_data_Base::ResetId(), and CBlast4_seq_part_data_Base::SetId().
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Definition at line 231 of file Blast4_request_.hpp.
Referenced by CBlast4_request_Base::GetIdent(), CBlast4_request_Base::ResetIdent(), and CBlast4_request_Base::SetIdent().
Definition at line 190 of file Blast_get_searc_info_reply_.hpp.
Referenced by CBlast4_get_search_info_reply_Base::GetInfo(), CBlast4_get_search_info_reply_Base::IsSetInfo(), CBlast4_get_search_info_reply_Base::ResetInfo(), and CBlast4_get_search_info_reply_Base::SetInfo().
TInteger CBlast4_value_Base::m_Integer |
Definition at line 877 of file Blast4_value_.hpp.
Referenced by CBlast4_value_Base::DoSelect(), CBlast4_value_Base::GetInteger(), and CBlast4_value_Base::SetInteger().
TInteger { ... } ::m_Integer |
Definition at line 877 of file Blast4_value_.hpp.
NCBI_NS_NCBI::CUnionBuffer<TInteger_list> CBlast4_value_Base::m_Integer_list |
Definition at line 884 of file Blast4_value_.hpp.
Referenced by CBlast4_value_Base::DoSelect(), CBlast4_value_Base::GetInteger_list(), CBlast4_value_Base::ResetSelection(), and CBlast4_value_Base::SetInteger_list().
NCBI_NS_NCBI::CUnionBuffer<TInteger_list> { ... } ::m_Integer_list |
Definition at line 884 of file Blast4_value_.hpp.
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Definition at line 259 of file Blast4_ka_block_.hpp.
Referenced by CBlast4_ka_block_Base::GetK(), CBlast4_ka_block_Base::ResetK(), and CBlast4_ka_block_Base::SetK().
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Definition at line 376 of file Blas_get_searc_resul_reply_.hpp.
Referenced by CBlast4_get_search_results_reply_Base::GetKa_blocks(), CBlast4_get_search_results_reply_Base::ResetKa_blocks(), and CBlast4_get_search_results_reply_Base::SetKa_blocks().
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Definition at line 258 of file Blast4_ka_block_.hpp.
Referenced by CBlast4_ka_block_Base::GetLambda(), CBlast4_ka_block_Base::ResetLambda(), and CBlast4_ka_block_Base::SetLambda().
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Definition at line 428 of file Blast4_database_info_.hpp.
Referenced by CBlast4_database_info_Base::GetLast_updated(), CBlast4_database_info_Base::ResetLast_updated(), and CBlast4_database_info_Base::SetLast_updated().
Definition at line 197 of file Blast4_mask_.hpp.
Referenced by CBlast4_mask_Base::GetLocations(), CBlast4_mask_Base::ResetLocations(), and CBlast4_mask_Base::SetLocations().
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Definition at line 375 of file Blas_get_searc_resul_reply_.hpp.
Referenced by CBlast4_get_search_results_reply_Base::GetMasks(), CBlast4_get_search_results_reply_Base::ResetMasks(), and CBlast4_get_search_results_reply_Base::SetMasks().
NCBI_NS_NCBI::CUnionBuffer<TMatrix_list> CBlast4_value_Base::m_Matrix_list |
Definition at line 885 of file Blast4_value_.hpp.
Referenced by CBlast4_value_Base::DoSelect(), CBlast4_value_Base::GetMatrix_list(), CBlast4_value_Base::ResetSelection(), and CBlast4_value_Base::SetMatrix_list().
NCBI_NS_NCBI::CUnionBuffer<TMatrix_list> { ... } ::m_Matrix_list |
Definition at line 885 of file Blast4_value_.hpp.
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Definition at line 227 of file Blast4_error_.hpp.
Referenced by CBlast4_error_Base::GetMessage(), CBlast4_error_Base::ResetMessage(), and CBlast4_error_Base::SetMessage().
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Definition at line 229 of file Blast4_archive_.hpp.
Referenced by CBlast4_archive_Base::GetMessages(), CBlast4_archive_Base::ResetMessages(), and CBlast4_archive_Base::SetMessages().
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Definition at line 186 of file Blast4_database_.hpp.
Referenced by CBlast4_database_Base::GetName(), CBlast4_database_Base::ResetName(), and CBlast4_database_Base::SetName().
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Definition at line 187 of file Blast4_matrix_id_.hpp.
Referenced by CBlast4_matrix_id_Base::GetName(), CBlast4_matrix_id_Base::ResetName(), and CBlast4_matrix_id_Base::SetName().
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Definition at line 189 of file Blast4_parameter_.hpp.
Referenced by CBlast4_parameter_Base::GetName(), CBlast4_parameter_Base::ResetName(), and CBlast4_parameter_Base::SetName().
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Definition at line 186 of file Blast4_parameter_info_.hpp.
Referenced by CBlast4_parameter_info_Base::GetName(), CBlast4_parameter_info_Base::ResetName(), and CBlast4_parameter_info_Base::SetName().
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Definition at line 189 of file Blast4_task_info_.hpp.
Referenced by CBlast4_task_info_Base::GetName(), CBlast4_task_info_Base::ResetName(), and CBlast4_task_info_Base::SetName().
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Definition at line 182 of file Blast4_phi_alignments_.hpp.
Referenced by CBlast4_phi_alignments_Base::GetNum_alignments(), CBlast4_phi_alignments_Base::ResetNum_alignments(), and CBlast4_phi_alignments_Base::SetNum_alignments().
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Definition at line 396 of file Blast4_simple_alignment_.hpp.
Referenced by CBlast4_simple_alignment_Base::GetNum_identities(), CBlast4_simple_alignment_Base::ResetNum_identities(), and CBlast4_simple_alignment_Base::SetNum_identities().
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Definition at line 397 of file Blast4_simple_alignment_.hpp.
Referenced by CBlast4_simple_alignment_Base::GetNum_indels(), CBlast4_simple_alignment_Base::ResetNum_indels(), and CBlast4_simple_alignment_Base::SetNum_indels().
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Definition at line 430 of file Blast4_database_info_.hpp.
Referenced by CBlast4_database_info_Base::GetNum_sequences(), CBlast4_database_info_Base::ResetNum_sequences(), and CBlast4_database_info_Base::SetNum_sequences().
NCBI_NS_NCBI::CSerialObject* CBlast4_queries_Base::m_object |
Definition at line 251 of file Blast4_queries_.hpp.
Referenced by CBlast4_queries_Base::DoSelect(), CBlast4_queries_Base::GetBioseq_set(), CBlast4_queries_Base::GetPssm(), CBlast4_queries_Base::ResetSelection(), CBlast4_queries_Base::SetBioseq_set(), and CBlast4_queries_Base::SetPssm().
NCBI_NS_NCBI::CSerialObject* { ... } ::m_object |
Definition at line 251 of file Blast4_queries_.hpp.
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Definition at line 621 of file Blast4_reply_body_.hpp.
Referenced by CBlast4_reply_body_Base::DoSelect(), CBlast4_reply_body_Base::GetFinish_params(), CBlast4_reply_body_Base::GetGet_databases(), CBlast4_reply_body_Base::GetGet_databases_ex(), CBlast4_reply_body_Base::GetGet_matrices(), CBlast4_reply_body_Base::GetGet_parameters(), CBlast4_reply_body_Base::GetGet_paramsets(), CBlast4_reply_body_Base::GetGet_programs(), CBlast4_reply_body_Base::GetGet_protocol_info(), CBlast4_reply_body_Base::GetGet_queries(), CBlast4_reply_body_Base::GetGet_request_info(), CBlast4_reply_body_Base::GetGet_search_info(), CBlast4_reply_body_Base::GetGet_search_results(), CBlast4_reply_body_Base::GetGet_sequence_parts(), CBlast4_reply_body_Base::GetGet_sequences(), CBlast4_reply_body_Base::GetGet_windowmasked_taxids(), CBlast4_reply_body_Base::GetQueue_search(), CBlast4_reply_body_Base::ResetSelection(), CBlast4_reply_body_Base::SetFinish_params(), CBlast4_reply_body_Base::SetGet_databases(), CBlast4_reply_body_Base::SetGet_databases_ex(), CBlast4_reply_body_Base::SetGet_matrices(), CBlast4_reply_body_Base::SetGet_parameters(), CBlast4_reply_body_Base::SetGet_paramsets(), CBlast4_reply_body_Base::SetGet_programs(), CBlast4_reply_body_Base::SetGet_protocol_info(), CBlast4_reply_body_Base::SetGet_queries(), CBlast4_reply_body_Base::SetGet_request_info(), CBlast4_reply_body_Base::SetGet_search_info(), CBlast4_reply_body_Base::SetGet_search_results(), CBlast4_reply_body_Base::SetGet_sequence_parts(), CBlast4_reply_body_Base::SetGet_sequences(), CBlast4_reply_body_Base::SetGet_windowmasked_taxids(), and CBlast4_reply_body_Base::SetQueue_search().
NCBI_NS_NCBI::CSerialObject* CBlast4_request_body_Base::m_object |
Definition at line 491 of file Blast4_request_body_.hpp.
Referenced by CBlast4_request_body_Base::DoSelect(), CBlast4_request_body_Base::GetFinish_params(), CBlast4_request_body_Base::GetGet_databases_ex(), CBlast4_request_body_Base::GetGet_protocol_info(), CBlast4_request_body_Base::GetGet_request_info(), CBlast4_request_body_Base::GetGet_search_info(), CBlast4_request_body_Base::GetGet_search_results(), CBlast4_request_body_Base::GetGet_sequence_parts(), CBlast4_request_body_Base::GetGet_sequences(), CBlast4_request_body_Base::GetQueue_search(), CBlast4_request_body_Base::ResetSelection(), CBlast4_request_body_Base::SetFinish_params(), CBlast4_request_body_Base::SetGet_databases_ex(), CBlast4_request_body_Base::SetGet_protocol_info(), CBlast4_request_body_Base::SetGet_request_info(), CBlast4_request_body_Base::SetGet_search_info(), CBlast4_request_body_Base::SetGet_search_results(), CBlast4_request_body_Base::SetGet_sequence_parts(), CBlast4_request_body_Base::SetGet_sequences(), and CBlast4_request_body_Base::SetQueue_search().
NCBI_NS_NCBI::CSerialObject* { ... } ::m_object |
Definition at line 491 of file Blast4_request_body_.hpp.
NCBI_NS_NCBI::CSerialObject* CBlast4_value_Base::m_object |
Definition at line 893 of file Blast4_value_.hpp.
Referenced by CBlast4_value_Base::DoSelect(), CBlast4_value_Base::GetBioseq(), CBlast4_value_Base::GetBioseq_set(), CBlast4_value_Base::GetCutoff(), CBlast4_value_Base::GetMatrix(), CBlast4_value_Base::GetQuery_mask(), CBlast4_value_Base::GetSeq_align(), CBlast4_value_Base::GetSeq_align_set(), CBlast4_value_Base::GetSeq_id(), CBlast4_value_Base::GetSeq_loc(), CBlast4_value_Base::ResetSelection(), CBlast4_value_Base::SetBioseq(), CBlast4_value_Base::SetBioseq_set(), CBlast4_value_Base::SetCutoff(), CBlast4_value_Base::SetMatrix(), CBlast4_value_Base::SetQuery_mask(), CBlast4_value_Base::SetSeq_align(), CBlast4_value_Base::SetSeq_align_set(), CBlast4_value_Base::SetSeq_id(), and CBlast4_value_Base::SetSeq_loc().
NCBI_NS_NCBI::CSerialObject* { ... } ::m_object |
Definition at line 893 of file Blast4_value_.hpp.
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Definition at line 443 of file Blast4_queue_search_reques_.hpp.
Referenced by CBlast4_queue_search_request_Base::GetParamset(), CBlast4_queue_search_request_Base::ResetParamset(), and CBlast4_queue_search_request_Base::SetParamset().
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Definition at line 272 of file Blast_finish_params_reques_.hpp.
Referenced by CBlast4_finish_params_request_Base::GetParamset(), CBlast4_finish_params_request_Base::ResetParamset(), and CBlast4_finish_params_request_Base::SetParamset().
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Definition at line 374 of file Blas_get_searc_resul_reply_.hpp.
Referenced by CBlast4_get_search_results_reply_Base::GetPhi_alignments(), CBlast4_get_search_results_reply_Base::IsSetPhi_alignments(), CBlast4_get_search_results_reply_Base::ResetPhi_alignments(), and CBlast4_get_search_results_reply_Base::SetPhi_alignments().
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Definition at line 180 of file Blast4_program_info_.hpp.
Referenced by CBlast4_program_info_Base::GetProgram(), CBlast4_program_info_Base::ResetProgram(), and CBlast4_program_info_Base::SetProgram().
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Definition at line 439 of file Blast4_queue_search_reques_.hpp.
Referenced by CBlast4_queue_search_request_Base::GetProgram(), CBlast4_queue_search_request_Base::ResetProgram(), and CBlast4_queue_search_request_Base::SetProgram().
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Definition at line 270 of file Blast_finish_params_reques_.hpp.
Referenced by CBlast4_finish_params_request_Base::GetProgram(), CBlast4_finish_params_request_Base::ResetProgram(), and CBlast4_finish_params_request_Base::SetProgram().
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Definition at line 468 of file Blast_get_reque_info_reply_.hpp.
Referenced by CBlast4_get_request_info_reply_Base::GetProgram(), CBlast4_get_request_info_reply_Base::ResetProgram(), and CBlast4_get_request_info_reply_Base::SetProgram().
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Definition at line 445 of file Blast4_queue_search_reques_.hpp.
Referenced by CBlast4_queue_search_request_Base::GetProgram_options(), CBlast4_queue_search_request_Base::IsSetProgram_options(), CBlast4_queue_search_request_Base::ResetProgram_options(), and CBlast4_queue_search_request_Base::SetProgram_options().
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Definition at line 473 of file Blast_get_reque_info_reply_.hpp.
Referenced by CBlast4_get_request_info_reply_Base::GetProgram_options(), CBlast4_get_request_info_reply_Base::IsSetProgram_options(), CBlast4_get_request_info_reply_Base::ResetProgram_options(), and CBlast4_get_request_info_reply_Base::SetProgram_options().
Definition at line 145 of file Blast4_get_queries_reply_.hpp.
Referenced by CBlast4_get_queries_reply_Base::GetQueries(), CBlast4_get_queries_reply_Base::IsSetQueries(), CBlast4_get_queries_reply_Base::ResetQueries(), and CBlast4_get_queries_reply_Base::SetQueries().
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Definition at line 188 of file Blast4_alignment_for_query_.hpp.
Referenced by CBlast4_alignments_for_query_Base::GetQuery_id(), CBlast4_alignments_for_query_Base::ResetQuery_id(), and CBlast4_alignments_for_query_Base::SetQuery_id().
TRaw_score { ... } ::m_Raw_score |
Definition at line 253 of file Blast4_cutoff_.hpp.
TRaw_score CBlast4_cutoff_Base::m_Raw_score |
Definition at line 253 of file Blast4_cutoff_.hpp.
Referenced by CBlast4_cutoff_Base::DoSelect(), CBlast4_cutoff_Base::GetRaw_score(), and CBlast4_cutoff_Base::SetRaw_score().
TReal { ... } ::m_Real |
Definition at line 878 of file Blast4_value_.hpp.
TReal CBlast4_value_Base::m_Real |
Definition at line 878 of file Blast4_value_.hpp.
Referenced by CBlast4_value_Base::DoSelect(), CBlast4_value_Base::GetReal(), and CBlast4_value_Base::SetReal().
NCBI_NS_NCBI::CUnionBuffer<TReal_list> CBlast4_value_Base::m_Real_list |
Definition at line 886 of file Blast4_value_.hpp.
Referenced by CBlast4_value_Base::DoSelect(), CBlast4_value_Base::GetReal_list(), CBlast4_value_Base::ResetSelection(), and CBlast4_value_Base::SetReal_list().
NCBI_NS_NCBI::CUnionBuffer<TReal_list> { ... } ::m_Real_list |
Definition at line 886 of file Blast4_value_.hpp.
Definition at line 227 of file Blast4_archive_.hpp.
Referenced by CBlast4_archive_Base::GetRequest(), CBlast4_archive_Base::IsSetRequest(), CBlast4_archive_Base::ResetRequest(), and CBlast4_archive_Base::SetRequest().
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Definition at line 187 of file Blas_get_searc_resul_reque_.hpp.
Referenced by CBlast4_get_search_results_request_Base::GetRequest_id(), CBlast4_get_search_results_request_Base::ResetRequest_id(), and CBlast4_get_search_results_request_Base::SetRequest_id().
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Definition at line 147 of file Blas_get_searc_statu_reque_.hpp.
Referenced by CBlast4_get_search_status_request_Base::GetRequest_id(), CBlast4_get_search_status_request_Base::ResetRequest_id(), and CBlast4_get_search_status_request_Base::SetRequest_id().
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Definition at line 147 of file Blas_get_searc_strat_reque_.hpp.
Referenced by CBlast4_get_search_strategy_request_Base::GetRequest_id(), CBlast4_get_search_strategy_request_Base::ResetRequest_id(), and CBlast4_get_search_strategy_request_Base::SetRequest_id().
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Definition at line 146 of file Blast4_queue_search_reply_.hpp.
Referenced by CBlast4_queue_search_reply_Base::GetRequest_id(), CBlast4_queue_search_reply_Base::ResetRequest_id(), and CBlast4_queue_search_reply_Base::SetRequest_id().
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Definition at line 147 of file Blast_get_reque_info_reque_.hpp.
Referenced by CBlast4_get_request_info_request_Base::GetRequest_id(), CBlast4_get_request_info_request_Base::ResetRequest_id(), and CBlast4_get_request_info_request_Base::SetRequest_id().
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Definition at line 189 of file Blast_get_searc_info_reply_.hpp.
Referenced by CBlast4_get_search_info_reply_Base::GetRequest_id(), CBlast4_get_search_info_reply_Base::ResetRequest_id(), and CBlast4_get_search_info_reply_Base::SetRequest_id().
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Definition at line 190 of file Blast_get_searc_info_reque_.hpp.
Referenced by CBlast4_get_search_info_request_Base::GetRequest_id(), CBlast4_get_search_info_request_Base::ResetRequest_id(), and CBlast4_get_search_info_request_Base::SetRequest_id().
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Definition at line 186 of file Blast4_matrix_id_.hpp.
Referenced by CBlast4_matrix_id_Base::GetResidue_type(), CBlast4_matrix_id_Base::ResetResidue_type(), and CBlast4_matrix_id_Base::SetResidue_type().
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Definition at line 188 of file Blas_get_searc_resul_reque_.hpp.
Referenced by CBlast4_get_search_results_request_Base::GetResult_types(), CBlast4_get_search_results_request_Base::ResetResult_types(), and CBlast4_get_search_results_request_Base::SetResult_types().
Definition at line 228 of file Blast4_archive_.hpp.
Referenced by CBlast4_archive_Base::GetResults(), CBlast4_archive_Base::IsSetResults(), CBlast4_archive_Base::ResetResults(), and CBlast4_archive_Base::SetResults().
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Definition at line 377 of file Blas_get_searc_resul_reply_.hpp.
Referenced by CBlast4_get_search_results_reply_Base::GetSearch_stats(), CBlast4_get_search_results_reply_Base::ResetSearch_stats(), and CBlast4_get_search_results_reply_Base::SetSearch_stats().
NCBI_NS_NCBI::CUnionBuffer<TSeq_align_list> { ... } ::m_Seq_align_list |
Definition at line 887 of file Blast4_value_.hpp.
NCBI_NS_NCBI::CUnionBuffer<TSeq_align_list> CBlast4_value_Base::m_Seq_align_list |
Definition at line 887 of file Blast4_value_.hpp.
Referenced by CBlast4_value_Base::DoSelect(), CBlast4_value_Base::GetSeq_align_list(), CBlast4_value_Base::ResetSelection(), and CBlast4_value_Base::SetSeq_align_list().
NCBI_NS_NCBI::CUnionBuffer<TSeq_id_list> { ... } ::m_Seq_id_list |
Definition at line 888 of file Blast4_value_.hpp.
NCBI_NS_NCBI::CUnionBuffer<TSeq_id_list> CBlast4_value_Base::m_Seq_id_list |
Definition at line 888 of file Blast4_value_.hpp.
Referenced by CBlast4_value_Base::DoSelect(), CBlast4_value_Base::GetSeq_id_list(), CBlast4_value_Base::ResetSelection(), and CBlast4_value_Base::SetSeq_id_list().
Definition at line 273 of file Blast4_get_sequenc_request_.hpp.
Referenced by CBlast4_get_sequences_request_Base::GetSeq_ids(), CBlast4_get_sequences_request_Base::ResetSeq_ids(), and CBlast4_get_sequences_request_Base::SetSeq_ids().
NCBI_NS_NCBI::CUnionBuffer<TSeq_loc_list> CBlast4_queries_Base::m_Seq_loc_list |
Definition at line 250 of file Blast4_queries_.hpp.
Referenced by CBlast4_queries_Base::DoSelect(), CBlast4_queries_Base::GetSeq_loc_list(), CBlast4_queries_Base::ResetSelection(), and CBlast4_queries_Base::SetSeq_loc_list().
NCBI_NS_NCBI::CUnionBuffer<TSeq_loc_list> { ... } ::m_Seq_loc_list |
Definition at line 250 of file Blast4_queries_.hpp.
NCBI_NS_NCBI::CUnionBuffer<TSeq_loc_list> CBlast4_subject_Base::m_Seq_loc_list |
Definition at line 241 of file Blast4_subject_.hpp.
Referenced by CBlast4_subject_Base::DoSelect(), CBlast4_subject_Base::GetSeq_loc_list(), CBlast4_subject_Base::ResetSelection(), and CBlast4_subject_Base::SetSeq_loc_list().
NCBI_NS_NCBI::CUnionBuffer<TSeq_loc_list> { ... } ::m_Seq_loc_list |
Definition at line 241 of file Blast4_subject_.hpp.
NCBI_NS_NCBI::CUnionBuffer<TSeq_loc_list> CBlast4_value_Base::m_Seq_loc_list |
Definition at line 889 of file Blast4_value_.hpp.
Referenced by CBlast4_value_Base::DoSelect(), CBlast4_value_Base::GetSeq_loc_list(), CBlast4_value_Base::ResetSelection(), and CBlast4_value_Base::SetSeq_loc_list().
NCBI_NS_NCBI::CUnionBuffer<TSeq_loc_list> { ... } ::m_Seq_loc_list |
Definition at line 889 of file Blast4_value_.hpp.
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Definition at line 191 of file Blast_get_seq_parts_reques_.hpp.
Referenced by CBlast4_get_seq_parts_request_Base::GetSeq_locations(), CBlast4_get_seq_parts_request_Base::ResetSeq_locations(), and CBlast4_get_seq_parts_request_Base::SetSeq_locations().
Definition at line 183 of file Blast4_phi_alignments_.hpp.
Referenced by CBlast4_phi_alignments_Base::GetSeq_locs(), CBlast4_phi_alignments_Base::ResetSeq_locs(), and CBlast4_phi_alignments_Base::SetSeq_locs().
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Definition at line 431 of file Blast4_database_info_.hpp.
Referenced by CBlast4_database_info_Base::GetSeqtech(), CBlast4_database_info_Base::ResetSeqtech(), and CBlast4_database_info_Base::SetSeqtech().
NCBI_NS_NCBI::CUnionBuffer<TSequences> CBlast4_subject_Base::m_Sequences |
Definition at line 240 of file Blast4_subject_.hpp.
Referenced by CBlast4_subject_Base::DoSelect(), CBlast4_subject_Base::GetSequences(), CBlast4_subject_Base::ResetSelection(), and CBlast4_subject_Base::SetSequences().
NCBI_NS_NCBI::CUnionBuffer<TSequences> { ... } ::m_Sequences |
Definition at line 240 of file Blast4_subject_.hpp.
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Definition at line 440 of file Blast4_queue_search_reques_.hpp.
Referenced by CBlast4_queue_search_request_Base::GetService(), CBlast4_queue_search_request_Base::ResetService(), and CBlast4_queue_search_request_Base::SetService().
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Definition at line 271 of file Blast_finish_params_reques_.hpp.
Referenced by CBlast4_finish_params_request_Base::GetService(), CBlast4_finish_params_request_Base::ResetService(), and CBlast4_finish_params_request_Base::SetService().
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Definition at line 469 of file Blast_get_reque_info_reply_.hpp.
Referenced by CBlast4_get_request_info_reply_Base::GetService(), CBlast4_get_request_info_reply_Base::ResetService(), and CBlast4_get_request_info_reply_Base::SetService().
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Definition at line 181 of file Blast4_program_info_.hpp.
Referenced by CBlast4_program_info_Base::GetServices(), CBlast4_program_info_Base::ResetServices(), and CBlast4_program_info_Base::SetServices().
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Definition at line 372 of file Blas_get_searc_resul_reply_.hpp.
Referenced by CBlast4_get_search_results_reply_Base::CBlast4_get_search_results_reply_Base(), CBlast4_get_search_results_reply_Base::IsSetKa_blocks(), CBlast4_get_search_results_reply_Base::IsSetMasks(), CBlast4_get_search_results_reply_Base::IsSetSearch_stats(), CBlast4_get_search_results_reply_Base::ResetKa_blocks(), CBlast4_get_search_results_reply_Base::ResetMasks(), CBlast4_get_search_results_reply_Base::ResetSearch_stats(), CBlast4_get_search_results_reply_Base::SetKa_blocks(), CBlast4_get_search_results_reply_Base::SetMasks(), and CBlast4_get_search_results_reply_Base::SetSearch_stats().
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Definition at line 186 of file Blas_get_searc_resul_reque_.hpp.
Referenced by CBlast4_get_search_results_request_Base::CBlast4_get_search_results_request_Base(), CBlast4_get_search_results_request_Base::IsSetRequest_id(), CBlast4_get_search_results_request_Base::IsSetResult_types(), CBlast4_get_search_results_request_Base::ResetRequest_id(), CBlast4_get_search_results_request_Base::ResetResult_types(), CBlast4_get_search_results_request_Base::SetRequest_id(), and CBlast4_get_search_results_request_Base::SetResult_types().
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Definition at line 146 of file Blas_get_searc_statu_reply_.hpp.
Referenced by CBlast4_get_search_status_reply_Base::CBlast4_get_search_status_reply_Base(), CBlast4_get_search_status_reply_Base::IsSetStatus(), CBlast4_get_search_status_reply_Base::ResetStatus(), and CBlast4_get_search_status_reply_Base::SetStatus().
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Definition at line 146 of file Blas_get_searc_statu_reque_.hpp.
Referenced by CBlast4_get_search_status_request_Base::CBlast4_get_search_status_request_Base(), CBlast4_get_search_status_request_Base::IsSetRequest_id(), CBlast4_get_search_status_request_Base::ResetRequest_id(), and CBlast4_get_search_status_request_Base::SetRequest_id().
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Definition at line 146 of file Blas_get_searc_strat_reque_.hpp.
Referenced by CBlast4_get_search_strategy_request_Base::CBlast4_get_search_strategy_request_Base(), CBlast4_get_search_strategy_request_Base::IsSetRequest_id(), CBlast4_get_search_strategy_request_Base::ResetRequest_id(), and CBlast4_get_search_strategy_request_Base::SetRequest_id().
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Definition at line 134 of file Blas_get_windo_taxid_reply_.hpp.
Referenced by CBlast4_get_windowmasked_taxids_reply_Base::CBlast4_get_windowmasked_taxids_reply_Base(), CBlast4_get_windowmasked_taxids_reply_Base::IsSet(), CBlast4_get_windowmasked_taxids_reply_Base::Reset(), and CBlast4_get_windowmasked_taxids_reply_Base::Set().
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Definition at line 187 of file Blast4_alignment_for_query_.hpp.
Referenced by CBlast4_alignments_for_query_Base::CBlast4_alignments_for_query_Base(), CBlast4_alignments_for_query_Base::IsSetAlignments(), CBlast4_alignments_for_query_Base::IsSetQuery_id(), CBlast4_alignments_for_query_Base::ResetAlignments(), CBlast4_alignments_for_query_Base::ResetQuery_id(), CBlast4_alignments_for_query_Base::SetAlignments(), and CBlast4_alignments_for_query_Base::SetQuery_id().
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Definition at line 226 of file Blast4_archive_.hpp.
Referenced by CBlast4_archive_Base::CBlast4_archive_Base(), CBlast4_archive_Base::IsSetMessages(), CBlast4_archive_Base::ResetMessages(), and CBlast4_archive_Base::SetMessages().
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Definition at line 185 of file Blast4_database_.hpp.
Referenced by CBlast4_database_Base::CBlast4_database_Base(), CBlast4_database_Base::IsSetName(), CBlast4_database_Base::IsSetType(), CBlast4_database_Base::ResetName(), CBlast4_database_Base::ResetType(), CBlast4_database_Base::SetName(), and CBlast4_database_Base::SetType().
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Definition at line 425 of file Blast4_database_info_.hpp.
Referenced by CBlast4_database_info_Base::CBlast4_database_info_Base(), CBlast4_database_info_Base::IsSetDescription(), CBlast4_database_info_Base::IsSetLast_updated(), CBlast4_database_info_Base::IsSetNum_sequences(), CBlast4_database_info_Base::IsSetSeqtech(), CBlast4_database_info_Base::IsSetTaxid(), CBlast4_database_info_Base::IsSetTotal_length(), CBlast4_database_info_Base::ResetDescription(), CBlast4_database_info_Base::ResetLast_updated(), CBlast4_database_info_Base::ResetNum_sequences(), CBlast4_database_info_Base::ResetSeqtech(), CBlast4_database_info_Base::ResetTaxid(), CBlast4_database_info_Base::ResetTotal_length(), CBlast4_database_info_Base::SetDescription(), CBlast4_database_info_Base::SetLast_updated(), CBlast4_database_info_Base::SetNum_sequences(), CBlast4_database_info_Base::SetSeqtech(), CBlast4_database_info_Base::SetTaxid(), and CBlast4_database_info_Base::SetTotal_length().
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Definition at line 225 of file Blast4_error_.hpp.
Referenced by CBlast4_error_Base::CBlast4_error_Base(), CBlast4_error_Base::IsSetCode(), CBlast4_error_Base::IsSetMessage(), CBlast4_error_Base::ResetCode(), CBlast4_error_Base::ResetMessage(), CBlast4_error_Base::SetCode(), and CBlast4_error_Base::SetMessage().
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Definition at line 138 of file Blast4_get_matrices_reply_.hpp.
Referenced by CBlast4_get_matrices_reply_Base::CBlast4_get_matrices_reply_Base(), CBlast4_get_matrices_reply_Base::IsSet(), CBlast4_get_matrices_reply_Base::Reset(), and CBlast4_get_matrices_reply_Base::Set().
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Definition at line 138 of file Blast4_get_programs_reply_.hpp.
Referenced by CBlast4_get_programs_reply_Base::CBlast4_get_programs_reply_Base(), CBlast4_get_programs_reply_Base::IsSet(), CBlast4_get_programs_reply_Base::Reset(), and CBlast4_get_programs_reply_Base::Set().
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Definition at line 144 of file Blast4_get_queries_reply_.hpp.
Referenced by CBlast4_get_queries_reply_Base::CBlast4_get_queries_reply_Base().
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Definition at line 271 of file Blast4_get_sequenc_request_.hpp.
Referenced by CBlast4_get_sequences_request_Base::CBlast4_get_sequences_request_Base(), CBlast4_get_sequences_request_Base::IsSetSeq_ids(), CBlast4_get_sequences_request_Base::IsSetSkip_seq_data(), CBlast4_get_sequences_request_Base::IsSetTarget_only(), CBlast4_get_sequences_request_Base::ResetSeq_ids(), CBlast4_get_sequences_request_Base::ResetSkip_seq_data(), CBlast4_get_sequences_request_Base::ResetTarget_only(), CBlast4_get_sequences_request_Base::SetSeq_ids(), CBlast4_get_sequences_request_Base::SetSkip_seq_data(), and CBlast4_get_sequences_request_Base::SetTarget_only().
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Definition at line 257 of file Blast4_ka_block_.hpp.
Referenced by CBlast4_ka_block_Base::CBlast4_ka_block_Base(), CBlast4_ka_block_Base::IsSetGapped(), CBlast4_ka_block_Base::IsSetH(), CBlast4_ka_block_Base::IsSetK(), CBlast4_ka_block_Base::IsSetLambda(), CBlast4_ka_block_Base::ResetGapped(), CBlast4_ka_block_Base::ResetH(), CBlast4_ka_block_Base::ResetK(), CBlast4_ka_block_Base::ResetLambda(), CBlast4_ka_block_Base::SetGapped(), CBlast4_ka_block_Base::SetH(), CBlast4_ka_block_Base::SetK(), and CBlast4_ka_block_Base::SetLambda().
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Definition at line 196 of file Blast4_mask_.hpp.
Referenced by CBlast4_mask_Base::CBlast4_mask_Base(), CBlast4_mask_Base::IsSetFrame(), CBlast4_mask_Base::IsSetLocations(), CBlast4_mask_Base::ResetFrame(), CBlast4_mask_Base::ResetLocations(), CBlast4_mask_Base::SetFrame(), and CBlast4_mask_Base::SetLocations().
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Definition at line 185 of file Blast4_matrix_id_.hpp.
Referenced by CBlast4_matrix_id_Base::CBlast4_matrix_id_Base(), CBlast4_matrix_id_Base::IsSetName(), CBlast4_matrix_id_Base::IsSetResidue_type(), CBlast4_matrix_id_Base::ResetName(), CBlast4_matrix_id_Base::ResetResidue_type(), CBlast4_matrix_id_Base::SetName(), and CBlast4_matrix_id_Base::SetResidue_type().
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Definition at line 188 of file Blast4_parameter_.hpp.
Referenced by CBlast4_parameter_Base::CBlast4_parameter_Base(), CBlast4_parameter_Base::IsSetName(), CBlast4_parameter_Base::ResetName(), and CBlast4_parameter_Base::SetName().
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Definition at line 185 of file Blast4_parameter_info_.hpp.
Referenced by CBlast4_parameter_info_Base::CBlast4_parameter_info_Base(), CBlast4_parameter_info_Base::IsSetName(), CBlast4_parameter_info_Base::IsSetType(), CBlast4_parameter_info_Base::ResetName(), CBlast4_parameter_info_Base::ResetType(), CBlast4_parameter_info_Base::SetName(), and CBlast4_parameter_info_Base::SetType().
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Definition at line 138 of file Blast4_parameters_.hpp.
Referenced by CBlast4_parameters_Base::CBlast4_parameters_Base(), CBlast4_parameters_Base::IsSet(), CBlast4_parameters_Base::Reset(), and CBlast4_parameters_Base::Set().
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Definition at line 181 of file Blast4_phi_alignments_.hpp.
Referenced by CBlast4_phi_alignments_Base::CBlast4_phi_alignments_Base(), CBlast4_phi_alignments_Base::IsSetNum_alignments(), CBlast4_phi_alignments_Base::IsSetSeq_locs(), CBlast4_phi_alignments_Base::ResetNum_alignments(), CBlast4_phi_alignments_Base::ResetSeq_locs(), CBlast4_phi_alignments_Base::SetNum_alignments(), and CBlast4_phi_alignments_Base::SetSeq_locs().
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Definition at line 179 of file Blast4_program_info_.hpp.
Referenced by CBlast4_program_info_Base::CBlast4_program_info_Base(), CBlast4_program_info_Base::IsSetProgram(), CBlast4_program_info_Base::IsSetServices(), CBlast4_program_info_Base::ResetProgram(), CBlast4_program_info_Base::ResetServices(), CBlast4_program_info_Base::SetProgram(), and CBlast4_program_info_Base::SetServices().
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Definition at line 145 of file Blast4_queue_search_reply_.hpp.
Referenced by CBlast4_queue_search_reply_Base::CBlast4_queue_search_reply_Base(), CBlast4_queue_search_reply_Base::IsSetRequest_id(), CBlast4_queue_search_reply_Base::ResetRequest_id(), and CBlast4_queue_search_reply_Base::SetRequest_id().
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Definition at line 438 of file Blast4_queue_search_reques_.hpp.
Referenced by CBlast4_queue_search_request_Base::CBlast4_queue_search_request_Base(), CBlast4_queue_search_request_Base::IsSetParamset(), CBlast4_queue_search_request_Base::IsSetProgram(), CBlast4_queue_search_request_Base::IsSetService(), CBlast4_queue_search_request_Base::ResetParamset(), CBlast4_queue_search_request_Base::ResetProgram(), CBlast4_queue_search_request_Base::ResetService(), CBlast4_queue_search_request_Base::SetParamset(), CBlast4_queue_search_request_Base::SetProgram(), and CBlast4_queue_search_request_Base::SetService().
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Definition at line 221 of file Blast4_range_.hpp.
Referenced by CBlast4_range_Base::CBlast4_range_Base(), CBlast4_range_Base::IsSetEnd(), CBlast4_range_Base::IsSetStart(), CBlast4_range_Base::IsSetStrand(), CBlast4_range_Base::ResetEnd(), CBlast4_range_Base::ResetStart(), CBlast4_range_Base::ResetStrand(), CBlast4_range_Base::SetEnd(), CBlast4_range_Base::SetStart(), and CBlast4_range_Base::SetStrand().
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Definition at line 221 of file Blast4_reply_.hpp.
Referenced by CBlast4_reply_Base::CBlast4_reply_Base(), CBlast4_reply_Base::IsSetErrors(), CBlast4_reply_Base::ResetErrors(), and CBlast4_reply_Base::SetErrors().
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Definition at line 230 of file Blast4_request_.hpp.
Referenced by CBlast4_request_Base::CBlast4_request_Base(), CBlast4_request_Base::IsSetIdent(), CBlast4_request_Base::ResetIdent(), and CBlast4_request_Base::SetIdent().
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Definition at line 188 of file Blast4_seq_part_data_.hpp.
Referenced by CBlast4_seq_part_data_Base::CBlast4_seq_part_data_Base().
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Definition at line 392 of file Blast4_simple_alignment_.hpp.
Referenced by CBlast4_simple_alignment_Base::CBlast4_simple_alignment_Base(), CBlast4_simple_alignment_Base::IsSetBit_score(), CBlast4_simple_alignment_Base::IsSetE_value(), CBlast4_simple_alignment_Base::IsSetNum_identities(), CBlast4_simple_alignment_Base::IsSetNum_indels(), CBlast4_simple_alignment_Base::IsSetSubject_id(), CBlast4_simple_alignment_Base::ResetBit_score(), CBlast4_simple_alignment_Base::ResetE_value(), CBlast4_simple_alignment_Base::ResetNum_identities(), CBlast4_simple_alignment_Base::ResetNum_indels(), CBlast4_simple_alignment_Base::ResetSubject_id(), CBlast4_simple_alignment_Base::SetBit_score(), CBlast4_simple_alignment_Base::SetE_value(), CBlast4_simple_alignment_Base::SetNum_identities(), CBlast4_simple_alignment_Base::SetNum_indels(), and CBlast4_simple_alignment_Base::SetSubject_id().
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Definition at line 188 of file Blast4_task_info_.hpp.
Referenced by CBlast4_task_info_Base::CBlast4_task_info_Base(), CBlast4_task_info_Base::IsSetDocumentation(), CBlast4_task_info_Base::IsSetName(), CBlast4_task_info_Base::ResetDocumentation(), CBlast4_task_info_Base::ResetName(), CBlast4_task_info_Base::SetDocumentation(), and CBlast4_task_info_Base::SetName().
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Definition at line 269 of file Blast_finish_params_reques_.hpp.
Referenced by CBlast4_finish_params_request_Base::CBlast4_finish_params_request_Base(), CBlast4_finish_params_request_Base::IsSetParamset(), CBlast4_finish_params_request_Base::IsSetProgram(), CBlast4_finish_params_request_Base::IsSetService(), CBlast4_finish_params_request_Base::ResetParamset(), CBlast4_finish_params_request_Base::ResetProgram(), CBlast4_finish_params_request_Base::ResetService(), CBlast4_finish_params_request_Base::SetParamset(), CBlast4_finish_params_request_Base::SetProgram(), and CBlast4_finish_params_request_Base::SetService().
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Definition at line 144 of file Blast_get_databa_ex_reques_.hpp.
Referenced by CBlast4_get_databases_ex_request_Base::CBlast4_get_databases_ex_request_Base().
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Definition at line 466 of file Blast_get_reque_info_reply_.hpp.
Referenced by CBlast4_get_request_info_reply_Base::CBlast4_get_request_info_reply_Base(), CBlast4_get_request_info_reply_Base::IsSetCreated_by(), CBlast4_get_request_info_reply_Base::IsSetProgram(), CBlast4_get_request_info_reply_Base::IsSetService(), CBlast4_get_request_info_reply_Base::ResetCreated_by(), CBlast4_get_request_info_reply_Base::ResetProgram(), CBlast4_get_request_info_reply_Base::ResetService(), CBlast4_get_request_info_reply_Base::SetCreated_by(), CBlast4_get_request_info_reply_Base::SetProgram(), and CBlast4_get_request_info_reply_Base::SetService().
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Definition at line 146 of file Blast_get_reque_info_reque_.hpp.
Referenced by CBlast4_get_request_info_request_Base::CBlast4_get_request_info_request_Base(), CBlast4_get_request_info_request_Base::IsSetRequest_id(), CBlast4_get_request_info_request_Base::ResetRequest_id(), and CBlast4_get_request_info_request_Base::SetRequest_id().
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Definition at line 188 of file Blast_get_searc_info_reply_.hpp.
Referenced by CBlast4_get_search_info_reply_Base::CBlast4_get_search_info_reply_Base(), CBlast4_get_search_info_reply_Base::IsSetRequest_id(), CBlast4_get_search_info_reply_Base::ResetRequest_id(), and CBlast4_get_search_info_reply_Base::SetRequest_id().
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Definition at line 189 of file Blast_get_searc_info_reque_.hpp.
Referenced by CBlast4_get_search_info_request_Base::CBlast4_get_search_info_request_Base(), CBlast4_get_search_info_request_Base::IsSetRequest_id(), CBlast4_get_search_info_request_Base::ResetRequest_id(), and CBlast4_get_search_info_request_Base::SetRequest_id().
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Definition at line 189 of file Blast_get_seq_parts_reques_.hpp.
Referenced by CBlast4_get_seq_parts_request_Base::CBlast4_get_seq_parts_request_Base(), CBlast4_get_seq_parts_request_Base::IsSetSeq_locations(), CBlast4_get_seq_parts_request_Base::ResetSeq_locations(), and CBlast4_get_seq_parts_request_Base::SetSeq_locations().
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Definition at line 379 of file Blas_get_searc_resul_reply_.hpp.
Referenced by CBlast4_get_search_results_reply_Base::GetSimple_results(), CBlast4_get_search_results_reply_Base::IsSetSimple_results(), CBlast4_get_search_results_reply_Base::ResetSimple_results(), and CBlast4_get_search_results_reply_Base::SetSimple_results().
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Definition at line 274 of file Blast4_get_sequenc_request_.hpp.
Referenced by CBlast4_get_sequences_request_Base::GetSkip_seq_data(), CBlast4_get_sequences_request_Base::ResetSkip_seq_data(), and CBlast4_get_sequences_request_Base::SetSkip_seq_data().
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Definition at line 222 of file Blast4_range_.hpp.
Referenced by CBlast4_range_Base::GetStart(), CBlast4_range_Base::ResetStart(), and CBlast4_range_Base::SetStart().
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Definition at line 147 of file Blas_get_searc_statu_reply_.hpp.
Referenced by CBlast4_get_search_status_reply_Base::GetStatus(), CBlast4_get_search_status_reply_Base::ResetStatus(), and CBlast4_get_search_status_reply_Base::SetStatus().
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Definition at line 224 of file Blast4_range_.hpp.
Referenced by CBlast4_range_Base::GetStrand(), CBlast4_range_Base::ResetStrand(), and CBlast4_range_Base::SetStrand().
TStrand_type { ... } ::m_Strand_type |
Definition at line 879 of file Blast4_value_.hpp.
TStrand_type CBlast4_value_Base::m_Strand_type |
Definition at line 879 of file Blast4_value_.hpp.
Referenced by CBlast4_value_Base::DoSelect(), CBlast4_value_Base::GetStrand_type(), and CBlast4_value_Base::SetStrand_type().
NCBI_NS_NCBI::CUnionBuffer<TStrand_type_list> { ... } ::m_Strand_type_list |
Definition at line 890 of file Blast4_value_.hpp.
NCBI_NS_NCBI::CUnionBuffer<TStrand_type_list> CBlast4_value_Base::m_Strand_type_list |
Definition at line 890 of file Blast4_value_.hpp.
Referenced by CBlast4_value_Base::DoSelect(), CBlast4_value_Base::GetStrand_type_list(), CBlast4_value_Base::ResetSelection(), and CBlast4_value_Base::SetStrand_type_list().
NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string> CBlast4_subject_Base::m_string |
Definition at line 242 of file Blast4_subject_.hpp.
Referenced by CBlast4_subject_Base::DoSelect(), CBlast4_subject_Base::GetDatabase(), CBlast4_subject_Base::ResetSelection(), and CBlast4_subject_Base::SetDatabase().
NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string> { ... } ::m_string |
Definition at line 242 of file Blast4_subject_.hpp.
NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string> { ... } ::m_string |
Definition at line 892 of file Blast4_value_.hpp.
NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string> CBlast4_value_Base::m_string |
Definition at line 892 of file Blast4_value_.hpp.
Referenced by CBlast4_value_Base::DoSelect(), CBlast4_value_Base::GetString(), CBlast4_value_Base::ResetSelection(), and CBlast4_value_Base::SetString().
NCBI_NS_NCBI::CUnionBuffer<TString_list> CBlast4_value_Base::m_String_list |
Definition at line 891 of file Blast4_value_.hpp.
Referenced by CBlast4_value_Base::DoSelect(), CBlast4_value_Base::GetString_list(), CBlast4_value_Base::ResetSelection(), and CBlast4_value_Base::SetString_list().
NCBI_NS_NCBI::CUnionBuffer<TString_list> { ... } ::m_String_list |
Definition at line 891 of file Blast4_value_.hpp.
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Definition at line 393 of file Blast4_simple_alignment_.hpp.
Referenced by CBlast4_simple_alignment_Base::GetSubject_id(), CBlast4_simple_alignment_Base::ResetSubject_id(), and CBlast4_simple_alignment_Base::SetSubject_id().
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Definition at line 275 of file Blast4_get_sequenc_request_.hpp.
Referenced by CBlast4_get_sequences_request_Base::GetTarget_only(), CBlast4_get_sequences_request_Base::ResetTarget_only(), and CBlast4_get_sequences_request_Base::SetTarget_only().
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Definition at line 432 of file Blast4_database_info_.hpp.
Referenced by CBlast4_database_info_Base::GetTaxid(), CBlast4_database_info_Base::ResetTaxid(), and CBlast4_database_info_Base::SetTaxid().
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Definition at line 429 of file Blast4_database_info_.hpp.
Referenced by CBlast4_database_info_Base::GetTotal_length(), CBlast4_database_info_Base::ResetTotal_length(), and CBlast4_database_info_Base::SetTotal_length().
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Definition at line 187 of file Blast4_database_.hpp.
Referenced by CBlast4_database_Base::GetType(), CBlast4_database_Base::ResetType(), and CBlast4_database_Base::SetType().
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Definition at line 187 of file Blast4_parameter_info_.hpp.
Referenced by CBlast4_parameter_info_Base::GetType(), CBlast4_parameter_info_Base::ResetType(), and CBlast4_parameter_info_Base::SetType().
Definition at line 190 of file Blast4_parameter_.hpp.
Referenced by CBlast4_parameter_Base::GetValue(), CBlast4_parameter_Base::IsSetValue(), CBlast4_parameter_Base::ResetValue(), and CBlast4_parameter_Base::SetValue().
Definition at line 249 of file Blast4_cutoff_.hpp.
Referenced by CBlast4_cutoff_Base::SelectionName(), and CBlast4_cutoff_Base::ThrowInvalidSelection().
Definition at line 247 of file Blast4_queries_.hpp.
Referenced by CBlast4_queries_Base::SelectionName(), and CBlast4_queries_Base::ThrowInvalidSelection().
Definition at line 619 of file Blast4_reply_body_.hpp.
Referenced by CBlast4_reply_body_Base::SelectionName(), and CBlast4_reply_body_Base::ThrowInvalidSelection().
Definition at line 488 of file Blast4_request_body_.hpp.
Referenced by CBlast4_request_body_Base::SelectionName(), and CBlast4_request_body_Base::ThrowInvalidSelection().
Definition at line 237 of file Blast4_subject_.hpp.
Referenced by CBlast4_subject_Base::SelectionName(), and CBlast4_subject_Base::ThrowInvalidSelection().
Definition at line 872 of file Blast4_value_.hpp.
Referenced by CBlast4_value_Base::SelectionName(), and CBlast4_value_Base::ThrowInvalidSelection().