Code generated by DATATOOL from 'blastdb.asn' (module 'NCBI-BlastDL')

Collaboration diagram for Code generated by DATATOOL from 'blastdb.asn' (module 'NCBI-BlastDL'):

Classes
class	CBlast_db_mask_info
	CBlast_db_mask_info –. More...
class	CBlast_db_mask_info_Base
	Defines the masking information for a set of sequences. More...
class	CBlast_db_metadata
	CBlast_db_metadata –. More...
class	CBlast_db_metadata_Base
	CBlast_db_metadata_Base –. More...
class	CBlast_def_line_Base
	CBlast_def_line_Base –. More...
class	CBlast_def_line_set_Base
	all deflines for an entry More...
class	CBlast_mask_list
	CBlast_mask_list –. More...
class	CBlast_mask_list_Base
	CBlast_mask_list_Base –. More...

Typedefs
typedef CBlast_db_mask_info_Base	CBlast_db_mask_info::Tparent
typedef CSerialObject	CBlast_db_mask_info_Base::Tparent
typedef int	CBlast_db_mask_info_Base::TAlgo_id
typedef int	CBlast_db_mask_info_Base::TAlgo_program
typedef string	CBlast_db_mask_info_Base::TAlgo_options
typedef CBlast_mask_list	CBlast_db_mask_info_Base::TMasks
typedef Tparent::CMemberIndex< E_memberIndex, 5 >	CBlast_db_mask_info_Base::TmemberIndex
typedef CBlast_db_metadata_Base	CBlast_db_metadata::Tparent
typedef CSerialObject	CBlast_db_metadata_Base::Tparent
typedef string	CBlast_db_metadata_Base::TVersion
typedef string	CBlast_db_metadata_Base::TDbname
typedef string	CBlast_db_metadata_Base::TDbtype
typedef int	CBlast_db_metadata_Base::TDb_version
typedef string	CBlast_db_metadata_Base::TDescription
typedef Uint8	CBlast_db_metadata_Base::TNumber_of_letters
typedef Int8	CBlast_db_metadata_Base::TNumber_of_sequences
typedef string	CBlast_db_metadata_Base::TLast_updated
typedef int	CBlast_db_metadata_Base::TNumber_of_volumes
typedef int	CBlast_db_metadata_Base::TNumber_of_taxids
typedef Uint8	CBlast_db_metadata_Base::TBytes_total
typedef Uint8	CBlast_db_metadata_Base::TBytes_to_cache
typedef Uint8	CBlast_db_metadata_Base::TBytes_total_compressed
typedef vector< string >	CBlast_db_metadata_Base::TFiles
typedef vector< string >	CBlast_db_metadata_Base::TCompressed_files
typedef Tparent::CMemberIndex< E_memberIndex, 16 >	CBlast_db_metadata_Base::TmemberIndex
typedef CSerialObject	CBlast_def_line_Base::Tparent
typedef string	CBlast_def_line_Base::TTitle
typedef list< CRef< CSeq_id > >	CBlast_def_line_Base::TSeqid
typedef NCBI_NS_NCBI::TTaxId	CBlast_def_line_Base::TTaxid
typedef list< int >	CBlast_def_line_Base::TMemberships
typedef list< int >	CBlast_def_line_Base::TLinks
typedef list< int >	CBlast_def_line_Base::TOther_info
typedef Tparent::CMemberIndex< E_memberIndex, 7 >	CBlast_def_line_Base::TmemberIndex
typedef CSerialObject	CBlast_def_line_set_Base::Tparent
typedef list< CRef< CBlast_def_line > >	CBlast_def_line_set_Base::Tdata
typedef CBlast_mask_list_Base	CBlast_mask_list::Tparent
typedef CSerialObject	CBlast_mask_list_Base::Tparent
typedef list< CRef< CSeq_loc > >	CBlast_mask_list_Base::TMasks
typedef bool	CBlast_mask_list_Base::TMore
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CBlast_mask_list_Base::TmemberIndex

Enumerations
enum class	CBlast_db_mask_info_Base::E_memberIndex {   CBlast_db_mask_info_Base::e__allMandatory = 0 , CBlast_db_mask_info_Base::e_algo_id , CBlast_db_mask_info_Base::e_algo_program , CBlast_db_mask_info_Base::e_algo_options ,   CBlast_db_mask_info_Base::e_masks }
enum class	CBlast_db_metadata_Base::E_memberIndex {   CBlast_db_metadata_Base::e__allMandatory = 0 , CBlast_db_metadata_Base::e_version , CBlast_db_metadata_Base::e_dbname , CBlast_db_metadata_Base::e_dbtype ,   CBlast_db_metadata_Base::e_db_version , CBlast_db_metadata_Base::e_description , CBlast_db_metadata_Base::e_number_of_letters , CBlast_db_metadata_Base::e_number_of_sequences ,   CBlast_db_metadata_Base::e_last_updated , CBlast_db_metadata_Base::e_number_of_volumes , CBlast_db_metadata_Base::e_number_of_taxids , CBlast_db_metadata_Base::e_bytes_total ,   CBlast_db_metadata_Base::e_bytes_to_cache , CBlast_db_metadata_Base::e_bytes_total_compressed , CBlast_db_metadata_Base::e_files , CBlast_db_metadata_Base::e_compressed_files }
enum class	CBlast_def_line_Base::E_memberIndex {   CBlast_def_line_Base::e__allMandatory = 0 , CBlast_def_line_Base::e_title , CBlast_def_line_Base::e_seqid , CBlast_def_line_Base::e_taxid ,   CBlast_def_line_Base::e_memberships , CBlast_def_line_Base::e_links , CBlast_def_line_Base::e_other_info }
enum	EBlast_filter_program {   eBlast_filter_program_not_set = 0 , eBlast_filter_program_dust = 10 , eBlast_filter_program_seg = 20 , eBlast_filter_program_windowmasker = 30 ,   eBlast_filter_program_repeat = 40 , eBlast_filter_program_other = 100 , eBlast_filter_program_max = 255 }
	This defines the possible sequence filtering algorithms to be used in a BLAST database. More...
enum class	CBlast_mask_list_Base::E_memberIndex { CBlast_mask_list_Base::e__allMandatory = 0 , CBlast_mask_list_Base::e_masks , CBlast_mask_list_Base::e_more }

Functions
	CBlast_db_mask_info::CBlast_db_mask_info (void)
	CBlast_db_mask_info::~CBlast_db_mask_info (void)
	CBlast_db_mask_info::CBlast_db_mask_info (const CBlast_db_mask_info &value)
CBlast_db_mask_info &	CBlast_db_mask_info::operator= (const CBlast_db_mask_info &value)
	CBlast_db_mask_info_Base::CBlast_db_mask_info_Base (void)
virtual	CBlast_db_mask_info_Base::~CBlast_db_mask_info_Base (void)
	CBlast_db_mask_info_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CBlast_db_mask_info_Base::IsSetAlgo_id (void) const
	Check if a value has been assigned to Algo_id data member. More...
bool	CBlast_db_mask_info_Base::CanGetAlgo_id (void) const
	Check if it is safe to call GetAlgo_id method. More...
void	CBlast_db_mask_info_Base::ResetAlgo_id (void)
	Reset Algo_id data member. More...
TAlgo_id	CBlast_db_mask_info_Base::GetAlgo_id (void) const
	Get the Algo_id member data. More...
void	CBlast_db_mask_info_Base::SetAlgo_id (TAlgo_id value)
	Assign a value to Algo_id data member. More...
TAlgo_id &	CBlast_db_mask_info_Base::SetAlgo_id (void)
	Assign a value to Algo_id data member. More...
bool	CBlast_db_mask_info_Base::IsSetAlgo_program (void) const
	Check if a value has been assigned to Algo_program data member. More...
bool	CBlast_db_mask_info_Base::CanGetAlgo_program (void) const
	Check if it is safe to call GetAlgo_program method. More...
void	CBlast_db_mask_info_Base::ResetAlgo_program (void)
	Reset Algo_program data member. More...
TAlgo_program	CBlast_db_mask_info_Base::GetAlgo_program (void) const
	Get the Algo_program member data. More...
void	CBlast_db_mask_info_Base::SetAlgo_program (TAlgo_program value)
	Assign a value to Algo_program data member. More...
TAlgo_program &	CBlast_db_mask_info_Base::SetAlgo_program (void)
	Assign a value to Algo_program data member. More...
bool	CBlast_db_mask_info_Base::IsSetAlgo_options (void) const
	Check if a value has been assigned to Algo_options data member. More...
bool	CBlast_db_mask_info_Base::CanGetAlgo_options (void) const
	Check if it is safe to call GetAlgo_options method. More...
void	CBlast_db_mask_info_Base::ResetAlgo_options (void)
	Reset Algo_options data member. More...
const TAlgo_options &	CBlast_db_mask_info_Base::GetAlgo_options (void) const
	Get the Algo_options member data. More...
void	CBlast_db_mask_info_Base::SetAlgo_options (const TAlgo_options &value)
	Assign a value to Algo_options data member. More...
void	CBlast_db_mask_info_Base::SetAlgo_options (TAlgo_options &&value)
TAlgo_options &	CBlast_db_mask_info_Base::SetAlgo_options (void)
	Assign a value to Algo_options data member. More...
bool	CBlast_db_mask_info_Base::IsSetMasks (void) const
	This object was originally created to allow pagination of the sequence masks, but this feature was discontinued in 01/21/2010 Check if a value has been assigned to Masks data member. More...
bool	CBlast_db_mask_info_Base::CanGetMasks (void) const
	Check if it is safe to call GetMasks method. More...
void	CBlast_db_mask_info_Base::ResetMasks (void)
	Reset Masks data member. More...
const TMasks &	CBlast_db_mask_info_Base::GetMasks (void) const
	Get the Masks member data. More...
void	CBlast_db_mask_info_Base::SetMasks (TMasks &value)
	Assign a value to Masks data member. More...
TMasks &	CBlast_db_mask_info_Base::SetMasks (void)
	Assign a value to Masks data member. More...
virtual void	CBlast_db_mask_info_Base::Reset (void)
	Reset the whole object. More...
	CBlast_db_mask_info_Base::CBlast_db_mask_info_Base (const CBlast_db_mask_info_Base &)
CBlast_db_mask_info_Base &	CBlast_db_mask_info_Base::operator= (const CBlast_db_mask_info_Base &)
	CBlast_db_metadata::CBlast_db_metadata (void)
	CBlast_db_metadata::~CBlast_db_metadata (void)
	CBlast_db_metadata::CBlast_db_metadata (const CBlast_db_metadata &value)
CBlast_db_metadata &	CBlast_db_metadata::operator= (const CBlast_db_metadata &value)
	CBlast_db_metadata_Base::CBlast_db_metadata_Base (void)
virtual	CBlast_db_metadata_Base::~CBlast_db_metadata_Base (void)
	CBlast_db_metadata_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CBlast_db_metadata_Base::IsSetVersion (void) const
	Default indicates the starting version Check if a value has been assigned to Version data member. More...
bool	CBlast_db_metadata_Base::CanGetVersion (void) const
	Check if it is safe to call GetVersion method. More...
void	CBlast_db_metadata_Base::ResetVersion (void)
	Reset Version data member. More...
void	CBlast_db_metadata_Base::SetDefaultVersion (void)
	Assign default value to Version data member. More...
const TVersion &	CBlast_db_metadata_Base::GetVersion (void) const
	Get the Version member data. More...
void	CBlast_db_metadata_Base::SetVersion (const TVersion &value)
	Assign a value to Version data member. More...
void	CBlast_db_metadata_Base::SetVersion (TVersion &&value)
TVersion &	CBlast_db_metadata_Base::SetVersion (void)
	Assign a value to Version data member. More...
bool	CBlast_db_metadata_Base::IsSetDbname (void) const
	Check if a value has been assigned to Dbname data member. More...
bool	CBlast_db_metadata_Base::CanGetDbname (void) const
	Check if it is safe to call GetDbname method. More...
void	CBlast_db_metadata_Base::ResetDbname (void)
	Reset Dbname data member. More...
const TDbname &	CBlast_db_metadata_Base::GetDbname (void) const
	Get the Dbname member data. More...
void	CBlast_db_metadata_Base::SetDbname (const TDbname &value)
	Assign a value to Dbname data member. More...
void	CBlast_db_metadata_Base::SetDbname (TDbname &&value)
TDbname &	CBlast_db_metadata_Base::SetDbname (void)
	Assign a value to Dbname data member. More...
bool	CBlast_db_metadata_Base::IsSetDbtype (void) const
	Check if a value has been assigned to Dbtype data member. More...
bool	CBlast_db_metadata_Base::CanGetDbtype (void) const
	Check if it is safe to call GetDbtype method. More...
void	CBlast_db_metadata_Base::ResetDbtype (void)
	Reset Dbtype data member. More...
const TDbtype &	CBlast_db_metadata_Base::GetDbtype (void) const
	Get the Dbtype member data. More...
void	CBlast_db_metadata_Base::SetDbtype (const TDbtype &value)
	Assign a value to Dbtype data member. More...
void	CBlast_db_metadata_Base::SetDbtype (TDbtype &&value)
TDbtype &	CBlast_db_metadata_Base::SetDbtype (void)
	Assign a value to Dbtype data member. More...
bool	CBlast_db_metadata_Base::IsSetDb_version (void) const
	Default indicates the starting version Check if a value has been assigned to Db_version data member. More...
bool	CBlast_db_metadata_Base::CanGetDb_version (void) const
	Check if it is safe to call GetDb_version method. More...
void	CBlast_db_metadata_Base::ResetDb_version (void)
	Reset Db_version data member. More...
void	CBlast_db_metadata_Base::SetDefaultDb_version (void)
	Assign default value to Db_version data member. More...
TDb_version	CBlast_db_metadata_Base::GetDb_version (void) const
	Get the Db_version member data. More...
void	CBlast_db_metadata_Base::SetDb_version (TDb_version value)
	Assign a value to Db_version data member. More...
TDb_version &	CBlast_db_metadata_Base::SetDb_version (void)
	Assign a value to Db_version data member. More...
bool	CBlast_db_metadata_Base::IsSetDescription (void) const
	Check if a value has been assigned to Description data member. More...
bool	CBlast_db_metadata_Base::CanGetDescription (void) const
	Check if it is safe to call GetDescription method. More...
void	CBlast_db_metadata_Base::ResetDescription (void)
	Reset Description data member. More...
const TDescription &	CBlast_db_metadata_Base::GetDescription (void) const
	Get the Description member data. More...
void	CBlast_db_metadata_Base::SetDescription (const TDescription &value)
	Assign a value to Description data member. More...
void	CBlast_db_metadata_Base::SetDescription (TDescription &&value)
TDescription &	CBlast_db_metadata_Base::SetDescription (void)
	Assign a value to Description data member. More...
bool	CBlast_db_metadata_Base::IsSetNumber_of_letters (void) const
	Check if a value has been assigned to Number_of_letters data member. More...
bool	CBlast_db_metadata_Base::CanGetNumber_of_letters (void) const
	Check if it is safe to call GetNumber_of_letters method. More...
void	CBlast_db_metadata_Base::ResetNumber_of_letters (void)
	Reset Number_of_letters data member. More...
TNumber_of_letters	CBlast_db_metadata_Base::GetNumber_of_letters (void) const
	Get the Number_of_letters member data. More...
void	CBlast_db_metadata_Base::SetNumber_of_letters (TNumber_of_letters value)
	Assign a value to Number_of_letters data member. More...
TNumber_of_letters &	CBlast_db_metadata_Base::SetNumber_of_letters (void)
	Assign a value to Number_of_letters data member. More...
bool	CBlast_db_metadata_Base::IsSetNumber_of_sequences (void) const
	Check if a value has been assigned to Number_of_sequences data member. More...
bool	CBlast_db_metadata_Base::CanGetNumber_of_sequences (void) const
	Check if it is safe to call GetNumber_of_sequences method. More...
void	CBlast_db_metadata_Base::ResetNumber_of_sequences (void)
	Reset Number_of_sequences data member. More...
TNumber_of_sequences	CBlast_db_metadata_Base::GetNumber_of_sequences (void) const
	Get the Number_of_sequences member data. More...
void	CBlast_db_metadata_Base::SetNumber_of_sequences (TNumber_of_sequences value)
	Assign a value to Number_of_sequences data member. More...
TNumber_of_sequences &	CBlast_db_metadata_Base::SetNumber_of_sequences (void)
	Assign a value to Number_of_sequences data member. More...
bool	CBlast_db_metadata_Base::IsSetLast_updated (void) const
	Check if a value has been assigned to Last_updated data member. More...
bool	CBlast_db_metadata_Base::CanGetLast_updated (void) const
	Check if it is safe to call GetLast_updated method. More...
void	CBlast_db_metadata_Base::ResetLast_updated (void)
	Reset Last_updated data member. More...
const TLast_updated &	CBlast_db_metadata_Base::GetLast_updated (void) const
	Get the Last_updated member data. More...
void	CBlast_db_metadata_Base::SetLast_updated (const TLast_updated &value)
	Assign a value to Last_updated data member. More...
void	CBlast_db_metadata_Base::SetLast_updated (TLast_updated &&value)
TLast_updated &	CBlast_db_metadata_Base::SetLast_updated (void)
	Assign a value to Last_updated data member. More...
bool	CBlast_db_metadata_Base::IsSetNumber_of_volumes (void) const
	Check if a value has been assigned to Number_of_volumes data member. More...
bool	CBlast_db_metadata_Base::CanGetNumber_of_volumes (void) const
	Check if it is safe to call GetNumber_of_volumes method. More...
void	CBlast_db_metadata_Base::ResetNumber_of_volumes (void)
	Reset Number_of_volumes data member. More...
TNumber_of_volumes	CBlast_db_metadata_Base::GetNumber_of_volumes (void) const
	Get the Number_of_volumes member data. More...
void	CBlast_db_metadata_Base::SetNumber_of_volumes (TNumber_of_volumes value)
	Assign a value to Number_of_volumes data member. More...
TNumber_of_volumes &	CBlast_db_metadata_Base::SetNumber_of_volumes (void)
	Assign a value to Number_of_volumes data member. More...
bool	CBlast_db_metadata_Base::IsSetNumber_of_taxids (void) const
	Check if a value has been assigned to Number_of_taxids data member. More...
bool	CBlast_db_metadata_Base::CanGetNumber_of_taxids (void) const
	Check if it is safe to call GetNumber_of_taxids method. More...
void	CBlast_db_metadata_Base::ResetNumber_of_taxids (void)
	Reset Number_of_taxids data member. More...
TNumber_of_taxids	CBlast_db_metadata_Base::GetNumber_of_taxids (void) const
	Get the Number_of_taxids member data. More...
void	CBlast_db_metadata_Base::SetNumber_of_taxids (TNumber_of_taxids value)
	Assign a value to Number_of_taxids data member. More...
TNumber_of_taxids &	CBlast_db_metadata_Base::SetNumber_of_taxids (void)
	Assign a value to Number_of_taxids data member. More...
bool	CBlast_db_metadata_Base::IsSetBytes_total (void) const
	Check if a value has been assigned to Bytes_total data member. More...
bool	CBlast_db_metadata_Base::CanGetBytes_total (void) const
	Check if it is safe to call GetBytes_total method. More...
void	CBlast_db_metadata_Base::ResetBytes_total (void)
	Reset Bytes_total data member. More...
TBytes_total	CBlast_db_metadata_Base::GetBytes_total (void) const
	Get the Bytes_total member data. More...
void	CBlast_db_metadata_Base::SetBytes_total (TBytes_total value)
	Assign a value to Bytes_total data member. More...
TBytes_total &	CBlast_db_metadata_Base::SetBytes_total (void)
	Assign a value to Bytes_total data member. More...
bool	CBlast_db_metadata_Base::IsSetBytes_to_cache (void) const
	Check if a value has been assigned to Bytes_to_cache data member. More...
bool	CBlast_db_metadata_Base::CanGetBytes_to_cache (void) const
	Check if it is safe to call GetBytes_to_cache method. More...
void	CBlast_db_metadata_Base::ResetBytes_to_cache (void)
	Reset Bytes_to_cache data member. More...
TBytes_to_cache	CBlast_db_metadata_Base::GetBytes_to_cache (void) const
	Get the Bytes_to_cache member data. More...
void	CBlast_db_metadata_Base::SetBytes_to_cache (TBytes_to_cache value)
	Assign a value to Bytes_to_cache data member. More...
TBytes_to_cache &	CBlast_db_metadata_Base::SetBytes_to_cache (void)
	Assign a value to Bytes_to_cache data member. More...
bool	CBlast_db_metadata_Base::IsSetBytes_total_compressed (void) const
	Check if a value has been assigned to Bytes_total_compressed data member. More...
bool	CBlast_db_metadata_Base::CanGetBytes_total_compressed (void) const
	Check if it is safe to call GetBytes_total_compressed method. More...
void	CBlast_db_metadata_Base::ResetBytes_total_compressed (void)
	Reset Bytes_total_compressed data member. More...
TBytes_total_compressed	CBlast_db_metadata_Base::GetBytes_total_compressed (void) const
	Get the Bytes_total_compressed member data. More...
void	CBlast_db_metadata_Base::SetBytes_total_compressed (TBytes_total_compressed value)
	Assign a value to Bytes_total_compressed data member. More...
TBytes_total_compressed &	CBlast_db_metadata_Base::SetBytes_total_compressed (void)
	Assign a value to Bytes_total_compressed data member. More...
bool	CBlast_db_metadata_Base::IsSetFiles (void) const
	Check if a value has been assigned to Files data member. More...
bool	CBlast_db_metadata_Base::CanGetFiles (void) const
	Check if it is safe to call GetFiles method. More...
void	CBlast_db_metadata_Base::ResetFiles (void)
	Reset Files data member. More...
const TFiles &	CBlast_db_metadata_Base::GetFiles (void) const
	Get the Files member data. More...
TFiles &	CBlast_db_metadata_Base::SetFiles (void)
	Assign a value to Files data member. More...
bool	CBlast_db_metadata_Base::IsSetCompressed_files (void) const
	Check if a value has been assigned to Compressed_files data member. More...
bool	CBlast_db_metadata_Base::CanGetCompressed_files (void) const
	Check if it is safe to call GetCompressed_files method. More...
void	CBlast_db_metadata_Base::ResetCompressed_files (void)
	Reset Compressed_files data member. More...
const TCompressed_files &	CBlast_db_metadata_Base::GetCompressed_files (void) const
	Get the Compressed_files member data. More...
TCompressed_files &	CBlast_db_metadata_Base::SetCompressed_files (void)
	Assign a value to Compressed_files data member. More...
virtual void	CBlast_db_metadata_Base::Reset (void)
	Reset the whole object. More...
	CBlast_db_metadata_Base::CBlast_db_metadata_Base (const CBlast_db_metadata_Base &)
CBlast_db_metadata_Base &	CBlast_db_metadata_Base::operator= (const CBlast_db_metadata_Base &)
	CBlast_def_line_Base::CBlast_def_line_Base (void)
virtual	CBlast_def_line_Base::~CBlast_def_line_Base (void)
	CBlast_def_line_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CBlast_def_line_Base::IsSetTitle (void) const
	simple title Check if a value has been assigned to Title data member. More...
bool	CBlast_def_line_Base::CanGetTitle (void) const
	Check if it is safe to call GetTitle method. More...
void	CBlast_def_line_Base::ResetTitle (void)
	Reset Title data member. More...
const TTitle &	CBlast_def_line_Base::GetTitle (void) const
	Get the Title member data. More...
void	CBlast_def_line_Base::SetTitle (const TTitle &value)
	Assign a value to Title data member. More...
void	CBlast_def_line_Base::SetTitle (TTitle &&value)
TTitle &	CBlast_def_line_Base::SetTitle (void)
	Assign a value to Title data member. More...
bool	CBlast_def_line_Base::IsSetSeqid (void) const
	Regular NCBI Seq-Id taxonomy id, should not be set if multiple taxids are available (see links below) Check if a value has been assigned to Seqid data member. More...
bool	CBlast_def_line_Base::CanGetSeqid (void) const
	Check if it is safe to call GetSeqid method. More...
void	CBlast_def_line_Base::ResetSeqid (void)
	Reset Seqid data member. More...
const TSeqid &	CBlast_def_line_Base::GetSeqid (void) const
	Get the Seqid member data. More...
TSeqid &	CBlast_def_line_Base::SetSeqid (void)
	Assign a value to Seqid data member. More...
bool	CBlast_def_line_Base::IsSetTaxid (void) const
	Check if a value has been assigned to Taxid data member. More...
bool	CBlast_def_line_Base::CanGetTaxid (void) const
	Check if it is safe to call GetTaxid method. More...
void	CBlast_def_line_Base::ResetTaxid (void)
	Reset Taxid data member. More...
TTaxid	CBlast_def_line_Base::GetTaxid (void) const
	Get the Taxid member data. More...
void	CBlast_def_line_Base::SetTaxid (TTaxid value)
	Assign a value to Taxid data member. More...
TTaxid &	CBlast_def_line_Base::SetTaxid (void)
	Assign a value to Taxid data member. More...
bool	CBlast_def_line_Base::IsSetMemberships (void) const
	bit arrays Repurposed to store the (multiple) taxIDs associated with WP proteins. More...
bool	CBlast_def_line_Base::CanGetMemberships (void) const
	Check if it is safe to call GetMemberships method. More...
void	CBlast_def_line_Base::ResetMemberships (void)
	Reset Memberships data member. More...
const TMemberships &	CBlast_def_line_Base::GetMemberships (void) const
	Get the Memberships member data. More...
TMemberships &	CBlast_def_line_Base::SetMemberships (void)
	Assign a value to Memberships data member. More...
bool	CBlast_def_line_Base::IsSetLinks (void) const
	Check if a value has been assigned to Links data member. More...
bool	CBlast_def_line_Base::CanGetLinks (void) const
	Check if it is safe to call GetLinks method. More...
void	CBlast_def_line_Base::ResetLinks (void)
	Reset Links data member. More...
const TLinks &	CBlast_def_line_Base::GetLinks (void) const
	Get the Links member data. More...
TLinks &	CBlast_def_line_Base::SetLinks (void)
	Assign a value to Links data member. More...
bool	CBlast_def_line_Base::IsSetOther_info (void) const
	In proteins this stores the PIG, in nucleotides this stores the "origin GIs" (if one sequence is described in the ASN.1 as an identical copy of another) Check if a value has been assigned to Other_info data member. More...
bool	CBlast_def_line_Base::CanGetOther_info (void) const
	Check if it is safe to call GetOther_info method. More...
void	CBlast_def_line_Base::ResetOther_info (void)
	Reset Other_info data member. More...
const TOther_info &	CBlast_def_line_Base::GetOther_info (void) const
	Get the Other_info member data. More...
TOther_info &	CBlast_def_line_Base::SetOther_info (void)
	Assign a value to Other_info data member. More...
virtual void	CBlast_def_line_Base::Reset (void)
	Reset the whole object. More...
	CBlast_def_line_Base::CBlast_def_line_Base (const CBlast_def_line_Base &)
CBlast_def_line_Base &	CBlast_def_line_Base::operator= (const CBlast_def_line_Base &)
	CBlast_def_line_set_Base::CBlast_def_line_set_Base (void)
virtual	CBlast_def_line_set_Base::~CBlast_def_line_set_Base (void)
	CBlast_def_line_set_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CBlast_def_line_set_Base::IsSet (void) const
	Check if a value has been assigned to data member. More...
bool	CBlast_def_line_set_Base::CanGet (void) const
	Check if it is safe to call Get method. More...
void	CBlast_def_line_set_Base::Reset (void)
	Reset data member. More...
const Tdata &	CBlast_def_line_set_Base::Get (void) const
	Get the member data. More...
Tdata &	CBlast_def_line_set_Base::Set (void)
	Assign a value to data member. More...
	CBlast_def_line_set_Base::operator const Tdata & (void) const
	Conversion operator to 'const Tdata' type. More...
	CBlast_def_line_set_Base::operator Tdata & (void)
	Conversion operator to 'Tdata' type. More...
	CBlast_def_line_set_Base::CBlast_def_line_set_Base (const CBlast_def_line_set_Base &)
CBlast_def_line_set_Base &	CBlast_def_line_set_Base::operator= (const CBlast_def_line_set_Base &)
	CBlast_mask_list::CBlast_mask_list (void)
	CBlast_mask_list::~CBlast_mask_list (void)
	CBlast_mask_list::CBlast_mask_list (const CBlast_mask_list &value)
CBlast_mask_list &	CBlast_mask_list::operator= (const CBlast_mask_list &value)
	CBlast_mask_list_Base::CBlast_mask_list_Base (void)
virtual	CBlast_mask_list_Base::~CBlast_mask_list_Base (void)
	CBlast_mask_list_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CBlast_mask_list_Base::IsSetMasks (void) const
	masks for a single sequence should be grouped in a Packed-seqint Check if a value has been assigned to Masks data member. More...
bool	CBlast_mask_list_Base::CanGetMasks (void) const
	Check if it is safe to call GetMasks method. More...
void	CBlast_mask_list_Base::ResetMasks (void)
	Reset Masks data member. More...
const TMasks &	CBlast_mask_list_Base::GetMasks (void) const
	Get the Masks member data. More...
TMasks &	CBlast_mask_list_Base::SetMasks (void)
	Assign a value to Masks data member. More...
bool	CBlast_mask_list_Base::IsSetMore (void) const
	as of 01/21/2010, this field is set to false always, indicating that the entire object (set of Seq-loc) is contained in this object Check if a value has been assigned to More data member. More...
bool	CBlast_mask_list_Base::CanGetMore (void) const
	Check if it is safe to call GetMore method. More...
void	CBlast_mask_list_Base::ResetMore (void)
	Reset More data member. More...
TMore	CBlast_mask_list_Base::GetMore (void) const
	Get the More member data. More...
void	CBlast_mask_list_Base::SetMore (TMore value)
	Assign a value to More data member. More...
TMore &	CBlast_mask_list_Base::SetMore (void)
	Assign a value to More data member. More...
virtual void	CBlast_mask_list_Base::Reset (void)
	Reset the whole object. More...
	CBlast_mask_list_Base::CBlast_mask_list_Base (const CBlast_mask_list_Base &)
CBlast_mask_list_Base &	CBlast_mask_list_Base::operator= (const CBlast_mask_list_Base &)

Variables
Uint4	CBlast_db_mask_info_Base::m_set_State [1]
int	CBlast_db_mask_info_Base::m_Algo_id
int	CBlast_db_mask_info_Base::m_Algo_program
string	CBlast_db_mask_info_Base::m_Algo_options
CRef< TMasks >	CBlast_db_mask_info_Base::m_Masks
Uint4	CBlast_db_metadata_Base::m_set_State [1]
string	CBlast_db_metadata_Base::m_Version
string	CBlast_db_metadata_Base::m_Dbname
string	CBlast_db_metadata_Base::m_Dbtype
int	CBlast_db_metadata_Base::m_Db_version
string	CBlast_db_metadata_Base::m_Description
Uint8	CBlast_db_metadata_Base::m_Number_of_letters
Int8	CBlast_db_metadata_Base::m_Number_of_sequences
string	CBlast_db_metadata_Base::m_Last_updated
int	CBlast_db_metadata_Base::m_Number_of_volumes
int	CBlast_db_metadata_Base::m_Number_of_taxids
Uint8	CBlast_db_metadata_Base::m_Bytes_total
Uint8	CBlast_db_metadata_Base::m_Bytes_to_cache
Uint8	CBlast_db_metadata_Base::m_Bytes_total_compressed
vector< string >	CBlast_db_metadata_Base::m_Files
vector< string >	CBlast_db_metadata_Base::m_Compressed_files
Uint4	CBlast_def_line_Base::m_set_State [1]
string	CBlast_def_line_Base::m_Title
list< CRef< CSeq_id > >	CBlast_def_line_Base::m_Seqid
int	CBlast_def_line_Base::m_Taxid
list< int >	CBlast_def_line_Base::m_Memberships
list< int >	CBlast_def_line_Base::m_Links
list< int >	CBlast_def_line_Base::m_Other_info
Uint4	CBlast_def_line_set_Base::m_set_State [1]
list< CRef< CBlast_def_line > >	CBlast_def_line_set_Base::m_data
Uint4	CBlast_mask_list_Base::m_set_State [1]
list< CRef< CSeq_loc > >	CBlast_mask_list_Base::m_Masks
bool	CBlast_mask_list_Base::m_More

Detailed Description

Typedef Documentation

TAlgo_id

typedef int CBlast_db_mask_info_Base::TAlgo_id

Definition at line 91 of file Blast_db_mask_info_.hpp.

TAlgo_options

typedef string CBlast_db_mask_info_Base::TAlgo_options

Definition at line 93 of file Blast_db_mask_info_.hpp.

TAlgo_program

typedef int CBlast_db_mask_info_Base::TAlgo_program

Definition at line 92 of file Blast_db_mask_info_.hpp.

TBytes_to_cache

typedef Uint8 CBlast_db_metadata_Base::TBytes_to_cache

Definition at line 97 of file Blast_db_metadata_.hpp.

TBytes_total

typedef Uint8 CBlast_db_metadata_Base::TBytes_total

Definition at line 96 of file Blast_db_metadata_.hpp.

TBytes_total_compressed

typedef Uint8 CBlast_db_metadata_Base::TBytes_total_compressed

Definition at line 98 of file Blast_db_metadata_.hpp.

TCompressed_files

typedef vector< string > CBlast_db_metadata_Base::TCompressed_files

Definition at line 100 of file Blast_db_metadata_.hpp.

Tdata

typedef list< CRef< CBlast_def_line > > CBlast_def_line_set_Base::Tdata

Definition at line 90 of file Blast_def_line_set_.hpp.

TDb_version

typedef int CBlast_db_metadata_Base::TDb_version

Definition at line 89 of file Blast_db_metadata_.hpp.

TDbname

typedef string CBlast_db_metadata_Base::TDbname

Definition at line 87 of file Blast_db_metadata_.hpp.

TDbtype

typedef string CBlast_db_metadata_Base::TDbtype

Definition at line 88 of file Blast_db_metadata_.hpp.

TDescription

typedef string CBlast_db_metadata_Base::TDescription

Definition at line 90 of file Blast_db_metadata_.hpp.

TFiles

typedef vector< string > CBlast_db_metadata_Base::TFiles

Definition at line 99 of file Blast_db_metadata_.hpp.

TLast_updated

typedef string CBlast_db_metadata_Base::TLast_updated

Definition at line 93 of file Blast_db_metadata_.hpp.

TLinks

typedef list< int > CBlast_def_line_Base::TLinks

Definition at line 94 of file Blast_def_line_.hpp.

TMasks [1/2]

typedef CBlast_mask_list CBlast_db_mask_info_Base::TMasks

Definition at line 94 of file Blast_db_mask_info_.hpp.

TMasks [2/2]

typedef list< CRef< CSeq_loc > > CBlast_mask_list_Base::TMasks

Definition at line 89 of file Blast_mask_list_.hpp.

TmemberIndex [1/4]

typedef Tparent::CMemberIndex<E_memberIndex, 5> CBlast_db_mask_info_Base::TmemberIndex

Definition at line 104 of file Blast_db_mask_info_.hpp.

TmemberIndex [2/4]

typedef Tparent::CMemberIndex<E_memberIndex, 16> CBlast_db_metadata_Base::TmemberIndex

Definition at line 121 of file Blast_db_metadata_.hpp.

TmemberIndex [3/4]

typedef Tparent::CMemberIndex<E_memberIndex, 7> CBlast_def_line_Base::TmemberIndex

Definition at line 107 of file Blast_def_line_.hpp.

TmemberIndex [4/4]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CBlast_mask_list_Base::TmemberIndex

Definition at line 98 of file Blast_mask_list_.hpp.

TMemberships

typedef list< int > CBlast_def_line_Base::TMemberships

Definition at line 93 of file Blast_def_line_.hpp.

TMore

typedef bool CBlast_mask_list_Base::TMore

Definition at line 90 of file Blast_mask_list_.hpp.

TNumber_of_letters

typedef Uint8 CBlast_db_metadata_Base::TNumber_of_letters

Definition at line 91 of file Blast_db_metadata_.hpp.

TNumber_of_sequences

typedef Int8 CBlast_db_metadata_Base::TNumber_of_sequences

Definition at line 92 of file Blast_db_metadata_.hpp.

TNumber_of_taxids

typedef int CBlast_db_metadata_Base::TNumber_of_taxids

Definition at line 95 of file Blast_db_metadata_.hpp.

TNumber_of_volumes

typedef int CBlast_db_metadata_Base::TNumber_of_volumes

Definition at line 94 of file Blast_db_metadata_.hpp.

TOther_info

typedef list< int > CBlast_def_line_Base::TOther_info

Definition at line 95 of file Blast_def_line_.hpp.

Tparent [1/8]

typedef CBlast_db_mask_info_Base CBlast_db_mask_info::Tparent

private

Definition at line 67 of file Blast_db_mask_info.hpp.

Tparent [2/8]

typedef CSerialObject CBlast_db_mask_info_Base::Tparent

private

Definition at line 80 of file Blast_db_mask_info_.hpp.

Tparent [3/8]

typedef CBlast_db_metadata_Base CBlast_db_metadata::Tparent

private

Definition at line 67 of file Blast_db_metadata.hpp.

Tparent [4/8]

typedef CSerialObject CBlast_db_metadata_Base::Tparent

private

Definition at line 75 of file Blast_db_metadata_.hpp.

Tparent [5/8]

typedef CSerialObject CBlast_def_line_Base::Tparent

private

Definition at line 79 of file Blast_def_line_.hpp.

Tparent [6/8]

typedef CSerialObject CBlast_def_line_set_Base::Tparent

private

Definition at line 79 of file Blast_def_line_set_.hpp.

Tparent [7/8]

typedef CBlast_mask_list_Base CBlast_mask_list::Tparent

private

Definition at line 67 of file Blast_mask_list.hpp.

Tparent [8/8]

typedef CSerialObject CBlast_mask_list_Base::Tparent

private

Definition at line 78 of file Blast_mask_list_.hpp.

TSeqid

typedef list< CRef< CSeq_id > > CBlast_def_line_Base::TSeqid

Definition at line 91 of file Blast_def_line_.hpp.

TTaxid

typedef NCBI_NS_NCBI::TTaxId CBlast_def_line_Base::TTaxid

Definition at line 92 of file Blast_def_line_.hpp.

TTitle

typedef string CBlast_def_line_Base::TTitle

Definition at line 90 of file Blast_def_line_.hpp.

TVersion

typedef string CBlast_db_metadata_Base::TVersion

Definition at line 86 of file Blast_db_metadata_.hpp.

Enumeration Type Documentation

E_memberIndex [1/4]

enum CBlast_db_mask_info_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_algo_id
e_algo_program
e_algo_options
e_masks

Definition at line 97 of file Blast_db_mask_info_.hpp.

E_memberIndex [2/4]

enum CBlast_db_metadata_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_version
e_dbname
e_dbtype
e_db_version
e_description
e_number_of_letters
e_number_of_sequences
e_last_updated
e_number_of_volumes
e_number_of_taxids
e_bytes_total
e_bytes_to_cache
e_bytes_total_compressed
e_files
e_compressed_files

Definition at line 103 of file Blast_db_metadata_.hpp.

E_memberIndex [3/4]

enum CBlast_def_line_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_title
e_seqid
e_taxid
e_memberships
e_links
e_other_info

Definition at line 98 of file Blast_def_line_.hpp.

E_memberIndex [4/4]

enum CBlast_mask_list_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_masks
e_more

Definition at line 93 of file Blast_mask_list_.hpp.

EBlast_filter_program

enum EBlast_filter_program

This defines the possible sequence filtering algorithms to be used in a BLAST database.

Access to EBlast_filter_program's attributes (values, names) as defined in spec.

Enumerator
eBlast_filter_program_not_set
eBlast_filter_program_dust
eBlast_filter_program_seg
eBlast_filter_program_windowmasker
eBlast_filter_program_repeat
eBlast_filter_program_other
eBlast_filter_program_max

Definition at line 65 of file Blast_filter_program_.hpp.

Function Documentation

CanGet()

bool CBlast_def_line_set_Base::CanGet ( void  ) const

inline

Check if it is safe to call Get method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 159 of file Blast_def_line_set_.hpp.

Referenced by CSeqDBImpl::GetAllTaxIDs(), CSeqDBVol::GetBioseq(), CSeqDBImpl::GetLeafTaxIDs(), CSeqDBVol::GetSeqIDs(), CSeqDBImpl::GetTaxIDs(), CBlast_def_line_set::SortBySeqIdRank(), CWriteDB_Impl::x_ExtractDeflines(), CSeqDBImpl::x_GetTaxIdsForSeqId(), CBlastTabularInfo::x_PrintSubjectAllTitles(), CBlastTabularInfo::x_PrintSubjectTitle(), CBlastTabularInfo::x_SetSubjectIds(), CBlastTabularInfo::x_SetTaxInfo(), and CBlastTabularInfo::x_SetTaxInfoAll().

CanGetAlgo_id()

bool CBlast_db_mask_info_Base::CanGetAlgo_id ( void  ) const

inline

Check if it is safe to call GetAlgo_id method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 293 of file Blast_db_mask_info_.hpp.

References CBlast_db_mask_info_Base::IsSetAlgo_id().

Referenced by CBlast_db_mask_info_Base::GetAlgo_id().

CanGetAlgo_options()

bool CBlast_db_mask_info_Base::CanGetAlgo_options ( void  ) const

inline

Check if it is safe to call GetAlgo_options method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 387 of file Blast_db_mask_info_.hpp.

References CBlast_db_mask_info_Base::IsSetAlgo_options().

Referenced by CBlast_db_mask_info_Base::GetAlgo_options().

CanGetAlgo_program()

bool CBlast_db_mask_info_Base::CanGetAlgo_program ( void  ) const

inline

Check if it is safe to call GetAlgo_program method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 340 of file Blast_db_mask_info_.hpp.

References CBlast_db_mask_info_Base::IsSetAlgo_program().

Referenced by CBlast_db_mask_info_Base::GetAlgo_program().

CanGetBytes_to_cache()

bool CBlast_db_metadata_Base::CanGetBytes_to_cache ( void  ) const

inline

Check if it is safe to call GetBytes_to_cache method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1256 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::IsSetBytes_to_cache().

Referenced by CBlast_db_metadata_Base::GetBytes_to_cache().

CanGetBytes_total()

bool CBlast_db_metadata_Base::CanGetBytes_total ( void  ) const

inline

Check if it is safe to call GetBytes_total method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1209 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::IsSetBytes_total().

Referenced by CBlast_db_metadata_Base::GetBytes_total().

CanGetBytes_total_compressed()

bool CBlast_db_metadata_Base::CanGetBytes_total_compressed ( void  ) const

inline

Check if it is safe to call GetBytes_total_compressed method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1303 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::IsSetBytes_total_compressed().

Referenced by CBlast_db_metadata_Base::GetBytes_total_compressed().

CanGetCompressed_files()

bool CBlast_db_metadata_Base::CanGetCompressed_files ( void  ) const

inline

Check if it is safe to call GetCompressed_files method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1375 of file Blast_db_metadata_.hpp.

CanGetDb_version()

bool CBlast_db_metadata_Base::CanGetDb_version ( void  ) const

inline

Check if it is safe to call GetDb_version method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 877 of file Blast_db_metadata_.hpp.

CanGetDbname()

bool CBlast_db_metadata_Base::CanGetDbname ( void  ) const

inline

Check if it is safe to call GetDbname method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 783 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::IsSetDbname().

Referenced by CBlast_db_metadata_Base::GetDbname().

CanGetDbtype()

bool CBlast_db_metadata_Base::CanGetDbtype ( void  ) const

inline

Check if it is safe to call GetDbtype method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 830 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::IsSetDbtype().

Referenced by CBlast_db_metadata_Base::GetDbtype().

CanGetDescription()

bool CBlast_db_metadata_Base::CanGetDescription ( void  ) const

inline

Check if it is safe to call GetDescription method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 927 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::IsSetDescription().

Referenced by CBlast_db_metadata_Base::GetDescription().

CanGetFiles()

bool CBlast_db_metadata_Base::CanGetFiles ( void  ) const

inline

Check if it is safe to call GetFiles method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1350 of file Blast_db_metadata_.hpp.

CanGetLast_updated()

bool CBlast_db_metadata_Base::CanGetLast_updated ( void  ) const

inline

Check if it is safe to call GetLast_updated method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1068 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::IsSetLast_updated().

Referenced by CBlast_db_metadata_Base::GetLast_updated().

CanGetLinks()

bool CBlast_def_line_Base::CanGetLinks ( void  ) const

inline

Check if it is safe to call GetLinks method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 499 of file Blast_def_line_.hpp.

CanGetMasks() [1/2]

bool CBlast_db_mask_info_Base::CanGetMasks ( void  ) const

inline

Check if it is safe to call GetMasks method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 434 of file Blast_db_mask_info_.hpp.

CanGetMasks() [2/2]

bool CBlast_mask_list_Base::CanGetMasks ( void  ) const

inline

Check if it is safe to call GetMasks method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 205 of file Blast_mask_list_.hpp.

CanGetMemberships()

bool CBlast_def_line_Base::CanGetMemberships ( void  ) const

inline

Check if it is safe to call GetMemberships method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 474 of file Blast_def_line_.hpp.

Referenced by CSeqDBVol::x_GetFilteredHeader().

CanGetMore()

bool CBlast_mask_list_Base::CanGetMore ( void  ) const

inline

Check if it is safe to call GetMore method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 230 of file Blast_mask_list_.hpp.

References CBlast_mask_list_Base::IsSetMore().

Referenced by CBlast_mask_list_Base::GetMore().

CanGetNumber_of_letters()

bool CBlast_db_metadata_Base::CanGetNumber_of_letters ( void  ) const

inline

Check if it is safe to call GetNumber_of_letters method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 974 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::IsSetNumber_of_letters().

Referenced by CBlast_db_metadata_Base::GetNumber_of_letters().

CanGetNumber_of_sequences()

bool CBlast_db_metadata_Base::CanGetNumber_of_sequences ( void  ) const

inline

Check if it is safe to call GetNumber_of_sequences method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1021 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::IsSetNumber_of_sequences().

Referenced by CBlast_db_metadata_Base::GetNumber_of_sequences().

CanGetNumber_of_taxids()

bool CBlast_db_metadata_Base::CanGetNumber_of_taxids ( void  ) const

inline

Check if it is safe to call GetNumber_of_taxids method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1162 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::IsSetNumber_of_taxids().

Referenced by CBlast_db_metadata_Base::GetNumber_of_taxids().

CanGetNumber_of_volumes()

bool CBlast_db_metadata_Base::CanGetNumber_of_volumes ( void  ) const

inline

Check if it is safe to call GetNumber_of_volumes method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1115 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::IsSetNumber_of_volumes().

Referenced by CBlast_db_metadata_Base::GetNumber_of_volumes().

CanGetOther_info()

bool CBlast_def_line_Base::CanGetOther_info ( void  ) const

inline

Check if it is safe to call GetOther_info method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 524 of file Blast_def_line_.hpp.

CanGetSeqid()

bool CBlast_def_line_Base::CanGetSeqid ( void  ) const

inline

Check if it is safe to call GetSeqid method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 402 of file Blast_def_line_.hpp.

Referenced by s_GetBioseqTitle(), and CSeqDBVol::x_GetFilteredHeader().

CanGetTaxid()

bool CBlast_def_line_Base::CanGetTaxid ( void  ) const

inline

Check if it is safe to call GetTaxid method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 427 of file Blast_def_line_.hpp.

References CBlast_def_line_Base::IsSetTaxid().

Referenced by CBlast_def_line_Base::GetTaxid(), and CBlast_def_line::GetTaxIds().

CanGetTitle()

bool CBlast_def_line_Base::CanGetTitle ( void  ) const

inline

Check if it is safe to call GetTitle method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 355 of file Blast_def_line_.hpp.

References CBlast_def_line_Base::IsSetTitle().

Referenced by CBlast_def_line_Base::GetTitle(), and s_GetBioseqTitle().

CanGetVersion()

bool CBlast_db_metadata_Base::CanGetVersion ( void  ) const

inline

Check if it is safe to call GetVersion method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 726 of file Blast_db_metadata_.hpp.

CBlast_db_mask_info() [1/2]

CBlast_db_mask_info::CBlast_db_mask_info ( const CBlast_db_mask_info &  value )

private

CBlast_db_mask_info() [2/2]

CBlast_db_mask_info::CBlast_db_mask_info ( void  )

inline

Definition at line 86 of file Blast_db_mask_info.hpp.

CBlast_db_mask_info_Base() [1/2]

CBlast_db_mask_info_Base::CBlast_db_mask_info_Base ( const CBlast_db_mask_info_Base &  )

private

CBlast_db_mask_info_Base() [2/2]

END_CLASS_INFO CBlast_db_mask_info_Base::CBlast_db_mask_info_Base

(

void

)

Definition at line 93 of file Blast_db_mask_info_.cpp.

References CObject::IsAllocatedInPool(), CBlast_db_mask_info_Base::m_set_State, and CBlast_db_mask_info_Base::ResetMasks().

CBlast_db_metadata() [1/2]

CBlast_db_metadata::CBlast_db_metadata ( const CBlast_db_metadata &  value )

private

CBlast_db_metadata() [2/2]

CBlast_db_metadata::CBlast_db_metadata ( void  )

inline

Definition at line 86 of file Blast_db_metadata.hpp.

CBlast_db_metadata_Base() [1/2]

CBlast_db_metadata_Base::CBlast_db_metadata_Base ( const CBlast_db_metadata_Base &  )

private

CBlast_db_metadata_Base() [2/2]

END_CLASS_INFO CBlast_db_metadata_Base::CBlast_db_metadata_Base

(

void

)

Definition at line 130 of file Blast_db_metadata_.cpp.

References CBlast_db_metadata_Base::m_set_State.

CBlast_def_line_Base() [1/2]

CBlast_def_line_Base::CBlast_def_line_Base ( const CBlast_def_line_Base &  )

private

CBlast_def_line_Base() [2/2]

END_CLASS_INFO CBlast_def_line_Base::CBlast_def_line_Base

(

void

)

Definition at line 107 of file Blast_def_line_.cpp.

References CBlast_def_line_Base::m_set_State.

CBlast_def_line_set_Base() [1/2]

CBlast_def_line_set_Base::CBlast_def_line_set_Base ( const CBlast_def_line_set_Base &  )

private

CBlast_def_line_set_Base() [2/2]

END_CLASS_INFO CBlast_def_line_set_Base::CBlast_def_line_set_Base

(

void

)

Definition at line 68 of file Blast_def_line_set_.cpp.

References CBlast_def_line_set_Base::m_set_State.

CBlast_mask_list() [1/2]

CBlast_mask_list::CBlast_mask_list ( const CBlast_mask_list &  value )

private

CBlast_mask_list() [2/2]

CBlast_mask_list::CBlast_mask_list ( void  )

inline

Definition at line 86 of file Blast_mask_list.hpp.

CBlast_mask_list_Base() [1/2]

CBlast_mask_list_Base::CBlast_mask_list_Base ( const CBlast_mask_list_Base &  )

private

CBlast_mask_list_Base() [2/2]

END_CLASS_INFO CBlast_mask_list_Base::CBlast_mask_list_Base

(

void

)

Definition at line 75 of file Blast_mask_list_.cpp.

References CBlast_mask_list_Base::m_set_State.

DECLARE_INTERNAL_TYPE_INFO() [1/5]

CBlast_db_mask_info_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [2/5]

CBlast_db_metadata_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [3/5]

CBlast_def_line_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [4/5]

CBlast_def_line_set_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [5/5]

CBlast_mask_list_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

Get()

const CBlast_def_line_set_Base::Tdata & CBlast_def_line_set_Base::Get ( void  ) const

inline

Get the member data.

Returns

Reference to the member data.

Definition at line 165 of file Blast_def_line_set_.hpp.

References CBlast_def_line_set_Base::m_data.

Referenced by CBuildDatabase::AddSequences(), BOOST_AUTO_TEST_CASE(), CBlastDbBioseqSource::CBlastDbBioseqSource(), CBlastDBExtractor::ExtractLinksInteger(), CBlastDBExtractor::ExtractMembershipInteger(), CSeqDBImpl::GetAllTaxIDs(), CSeqDBVol::GetBioseq(), CShowBlastDefline::GetBioseqHandleDeflineAndId(), CSeqDBVol::GetGi(), CSeqDBImpl::GetLeafTaxIDs(), CSeqDBVol::GetPig(), CSeqDBVol::GetSeqIDs(), CAlignFormatUtil::GetTaxidForSeqid(), CSeqDBImpl::GetTaxIDs(), s_GetBioseqTitle(), s_LimitDeflines(), s_ModifySeqAlnWithFilteredSeqIDs(), s_SeqAlignToXMLHit(), s_SetIdList(), s_UseFastaReaderDeflines(), CSearch< LEGACY, NHITS >::SetResult(), CBlastDB_SeqFormatter::Write(), CShowBlastDefline::x_CheckForStructureLink(), CWriteDB_Impl::x_CookIds(), CBuildDatabase::x_DupLocal(), CBuildDatabase::x_EditAndAddBioseq(), CWriteDB_Impl::x_ExtractDeflines(), CShowBlastDefline::x_FillDeflineAndId(), CSeqDBVol::x_GetTaxDefline(), CSeqDBImpl::x_GetTaxIdsForSeqId(), CSeqDBVol::x_GetTaxonomy(), CDisplaySeqalign::x_InitDefLinesHeader(), CTaxFormat::x_InitTaxInfoMap(), CDisplaySeqalign::x_PrintDefLine(), CBlastTabularInfo::x_PrintSubjectAllTitles(), CBlastTabularInfo::x_PrintSubjectTitle(), CMakeBlastDBApp::x_ProcessInputData(), CBlastDBExtractor::x_SetGi2AccMap(), CBlastDBExtractor::x_SetGi2SeqIdMap(), CBlastDBExtractor::x_SetGi2TitleMap(), CBlastTabularInfo::x_SetSubjectIds(), CBlastTabularInfo::x_SetTaxInfo(), and CBlastTabularInfo::x_SetTaxInfoAll().

GetAlgo_id()

CBlast_db_mask_info_Base::TAlgo_id CBlast_db_mask_info_Base::GetAlgo_id ( void  ) const

inline

Get the Algo_id member data.

Returns

Copy of the member data.

Definition at line 306 of file Blast_db_mask_info_.hpp.

References CBlast_db_mask_info_Base::CanGetAlgo_id(), CBlast_db_mask_info_Base::m_Algo_id, and CSerialObject::ThrowUnassigned().

GetAlgo_options()

const CBlast_db_mask_info_Base::TAlgo_options & CBlast_db_mask_info_Base::GetAlgo_options ( void  ) const

inline

Get the Algo_options member data.

Returns

Reference to the member data.

Definition at line 393 of file Blast_db_mask_info_.hpp.

References CBlast_db_mask_info_Base::CanGetAlgo_options(), CBlast_db_mask_info_Base::m_Algo_options, and CSerialObject::ThrowUnassigned().

GetAlgo_program()

CBlast_db_mask_info_Base::TAlgo_program CBlast_db_mask_info_Base::GetAlgo_program ( void  ) const

inline

Get the Algo_program member data.

Returns

Copy of the member data.

Definition at line 353 of file Blast_db_mask_info_.hpp.

References CBlast_db_mask_info_Base::CanGetAlgo_program(), CBlast_db_mask_info_Base::m_Algo_program, and CSerialObject::ThrowUnassigned().

GetBytes_to_cache()

CBlast_db_metadata_Base::TBytes_to_cache CBlast_db_metadata_Base::GetBytes_to_cache ( void  ) const

inline

Get the Bytes_to_cache member data.

Returns

Copy of the member data.

Definition at line 1269 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::CanGetBytes_to_cache(), CBlast_db_metadata_Base::m_Bytes_to_cache, and CSerialObject::ThrowUnassigned().

GetBytes_total()

CBlast_db_metadata_Base::TBytes_total CBlast_db_metadata_Base::GetBytes_total ( void  ) const

inline

Get the Bytes_total member data.

Returns

Copy of the member data.

Definition at line 1222 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::CanGetBytes_total(), CBlast_db_metadata_Base::m_Bytes_total, and CSerialObject::ThrowUnassigned().

GetBytes_total_compressed()

CBlast_db_metadata_Base::TBytes_total_compressed CBlast_db_metadata_Base::GetBytes_total_compressed ( void  ) const

inline

Get the Bytes_total_compressed member data.

Returns

Copy of the member data.

Definition at line 1316 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::CanGetBytes_total_compressed(), CBlast_db_metadata_Base::m_Bytes_total_compressed, and CSerialObject::ThrowUnassigned().

GetCompressed_files()

const CBlast_db_metadata_Base::TCompressed_files & CBlast_db_metadata_Base::GetCompressed_files ( void  ) const

inline

Get the Compressed_files member data.

Returns

Reference to the member data.

Definition at line 1381 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Compressed_files.

GetDb_version()

CBlast_db_metadata_Base::TDb_version CBlast_db_metadata_Base::GetDb_version ( void  ) const

inline

Get the Db_version member data.

Returns

Copy of the member data.

Definition at line 896 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Db_version.

GetDbname()

const CBlast_db_metadata_Base::TDbname & CBlast_db_metadata_Base::GetDbname ( void  ) const

inline

Get the Dbname member data.

Returns

Reference to the member data.

Definition at line 789 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::CanGetDbname(), CBlast_db_metadata_Base::m_Dbname, and CSerialObject::ThrowUnassigned().

GetDbtype()

const CBlast_db_metadata_Base::TDbtype & CBlast_db_metadata_Base::GetDbtype ( void  ) const

inline

Get the Dbtype member data.

Returns

Reference to the member data.

Definition at line 836 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::CanGetDbtype(), CBlast_db_metadata_Base::m_Dbtype, and CSerialObject::ThrowUnassigned().

GetDescription()

const CBlast_db_metadata_Base::TDescription & CBlast_db_metadata_Base::GetDescription ( void  ) const

inline

Get the Description member data.

Returns

Reference to the member data.

Definition at line 933 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::CanGetDescription(), CBlast_db_metadata_Base::m_Description, and CSerialObject::ThrowUnassigned().

GetFiles()

const CBlast_db_metadata_Base::TFiles & CBlast_db_metadata_Base::GetFiles ( void  ) const

inline

Get the Files member data.

Returns

Reference to the member data.

Definition at line 1356 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Files.

GetLast_updated()

const CBlast_db_metadata_Base::TLast_updated & CBlast_db_metadata_Base::GetLast_updated ( void  ) const

inline

Get the Last_updated member data.

Returns

Reference to the member data.

Definition at line 1074 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::CanGetLast_updated(), CBlast_db_metadata_Base::m_Last_updated, and CSerialObject::ThrowUnassigned().

GetLinks()

const CBlast_def_line_Base::TLinks & CBlast_def_line_Base::GetLinks ( void  ) const

inline

Get the Links member data.

Returns

Reference to the member data.

Definition at line 505 of file Blast_def_line_.hpp.

References CBlast_def_line_Base::m_Links.

Referenced by CBlast_def_line::GetLeafTaxIds(), CBlast_def_line::GetTaxIds(), s_IncludeDefline_Taxid(), and s_IncludeDeflineTaxid().

GetMasks() [1/2]

const CBlast_db_mask_info_Base::TMasks & CBlast_db_mask_info_Base::GetMasks ( void  ) const

inline

Get the Masks member data.

Returns

Reference to the member data.

Definition at line 440 of file Blast_db_mask_info_.hpp.

References CBlast_db_mask_info_Base::m_Masks, and CBlast_db_mask_info_Base::ResetMasks().

GetMasks() [2/2]

const CBlast_mask_list_Base::TMasks & CBlast_mask_list_Base::GetMasks ( void  ) const

inline

Get the Masks member data.

Returns

Reference to the member data.

Definition at line 211 of file Blast_mask_list_.hpp.

References CBlast_mask_list_Base::m_Masks.

Referenced by CMakeBlastDBApp::x_ProcessMaskData().

GetMemberships()

const CBlast_def_line_Base::TMemberships & CBlast_def_line_Base::GetMemberships ( void  ) const

inline

Get the Memberships member data.

Returns

Reference to the member data.

Definition at line 480 of file Blast_def_line_.hpp.

References CBlast_def_line_Base::m_Memberships.

Referenced by CSeqDBVol::x_GetFilteredHeader().

GetMore()

CBlast_mask_list_Base::TMore CBlast_mask_list_Base::GetMore ( void  ) const

inline

Get the More member data.

Returns

Copy of the member data.

Definition at line 243 of file Blast_mask_list_.hpp.

References CBlast_mask_list_Base::CanGetMore(), CBlast_mask_list_Base::m_More, and CSerialObject::ThrowUnassigned().

Referenced by CMakeBlastDBApp::x_ProcessMaskData().

GetNumber_of_letters()

CBlast_db_metadata_Base::TNumber_of_letters CBlast_db_metadata_Base::GetNumber_of_letters ( void  ) const

inline

Get the Number_of_letters member data.

Returns

Copy of the member data.

Definition at line 987 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::CanGetNumber_of_letters(), CBlast_db_metadata_Base::m_Number_of_letters, and CSerialObject::ThrowUnassigned().

GetNumber_of_sequences()

CBlast_db_metadata_Base::TNumber_of_sequences CBlast_db_metadata_Base::GetNumber_of_sequences ( void  ) const

inline

Get the Number_of_sequences member data.

Returns

Copy of the member data.

Definition at line 1034 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::CanGetNumber_of_sequences(), CBlast_db_metadata_Base::m_Number_of_sequences, and CSerialObject::ThrowUnassigned().

GetNumber_of_taxids()

CBlast_db_metadata_Base::TNumber_of_taxids CBlast_db_metadata_Base::GetNumber_of_taxids ( void  ) const

inline

Get the Number_of_taxids member data.

Returns

Copy of the member data.

Definition at line 1175 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::CanGetNumber_of_taxids(), CBlast_db_metadata_Base::m_Number_of_taxids, and CSerialObject::ThrowUnassigned().

GetNumber_of_volumes()

CBlast_db_metadata_Base::TNumber_of_volumes CBlast_db_metadata_Base::GetNumber_of_volumes ( void  ) const

inline

Get the Number_of_volumes member data.

Returns

Copy of the member data.

Definition at line 1128 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::CanGetNumber_of_volumes(), CBlast_db_metadata_Base::m_Number_of_volumes, and CSerialObject::ThrowUnassigned().

GetOther_info()

const CBlast_def_line_Base::TOther_info & CBlast_def_line_Base::GetOther_info ( void  ) const

inline

Get the Other_info member data.

Returns

Reference to the member data.

Definition at line 530 of file Blast_def_line_.hpp.

References CBlast_def_line_Base::m_Other_info.

Referenced by CBuildDatabase::x_AddPig().

GetSeqid()

const CBlast_def_line_Base::TSeqid & CBlast_def_line_Base::GetSeqid ( void  ) const

inline

Get the Seqid member data.

Returns

Reference to the member data.

Definition at line 408 of file Blast_def_line_.hpp.

References CBlast_def_line_Base::m_Seqid.

Referenced by s_GetBioseqTitle(), s_IncludeDefline_MaskFilter(), s_SeqAlignToXMLHit(), and CSeqDBVol::x_GetFilteredHeader().

GetTaxid()

CBlast_def_line_Base::TTaxid CBlast_def_line_Base::GetTaxid ( void  ) const

inline

Get the Taxid member data.

Returns

Copy of the member data.

Definition at line 440 of file Blast_def_line_.hpp.

References CBlast_def_line_Base::CanGetTaxid(), CBlast_def_line_Base::m_Taxid, and CSerialObject::ThrowUnassigned().

Referenced by BOOST_AUTO_TEST_CASE(), CBlast_def_line::GetTaxIds(), s_IncludeDefline_Taxid(), s_IncludeDeflineTaxid(), s_SeqAlignToXMLHit(), and CBlast_def_line::SetTaxIds().

GetTitle()

const CBlast_def_line_Base::TTitle & CBlast_def_line_Base::GetTitle ( void  ) const

inline

Get the Title member data.

Returns

Reference to the member data.

Definition at line 361 of file Blast_def_line_.hpp.

References CBlast_def_line_Base::CanGetTitle(), CBlast_def_line_Base::m_Title, and CSerialObject::ThrowUnassigned().

Referenced by s_GetBioseqTitle(), and s_SeqAlignToXMLHit().

GetVersion()

const CBlast_db_metadata_Base::TVersion & CBlast_db_metadata_Base::GetVersion ( void  ) const

inline

Get the Version member data.

Returns

Reference to the member data.

Definition at line 745 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Version.

IsSet()

bool CBlast_def_line_set_Base::IsSet ( void  ) const

inline

Check if a value has been assigned to data member.

Data member is mandatory; its type is defined as 'typedef list< CRef< CBlast_def_line > > Tdata'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 153 of file Blast_def_line_set_.hpp.

References CBlast_def_line_set_Base::m_set_State.

Referenced by CSeqDBVol::GetGi(), CSeqDBVol::GetPig(), s_SeqAlignToXMLHit(), CBlastTabularInfo::x_PrintSubjectAllTitles(), CBlastTabularInfo::x_PrintSubjectTitle(), CBlastTabularInfo::x_SetSubjectIds(), CBlastTabularInfo::x_SetTaxInfo(), and CBlastTabularInfo::x_SetTaxInfoAll().

IsSetAlgo_id()

bool CBlast_db_mask_info_Base::IsSetAlgo_id ( void  ) const

inline

Check if a value has been assigned to Algo_id data member.

Data member Algo_id is mandatory; its type is defined as 'typedef int TAlgo_id'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 287 of file Blast_db_mask_info_.hpp.

References CBlast_db_mask_info_Base::m_set_State.

Referenced by CBlast_db_mask_info_Base::CanGetAlgo_id(), and CBlast_db_mask_info_Base::SetAlgo_id().

IsSetAlgo_options()

bool CBlast_db_mask_info_Base::IsSetAlgo_options ( void  ) const

inline

Check if a value has been assigned to Algo_options data member.

Data member Algo_options is mandatory; its type is defined as 'typedef string TAlgo_options'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 381 of file Blast_db_mask_info_.hpp.

References CBlast_db_mask_info_Base::m_set_State.

Referenced by CBlast_db_mask_info_Base::CanGetAlgo_options(), and CBlast_db_mask_info_Base::SetAlgo_options().

IsSetAlgo_program()

bool CBlast_db_mask_info_Base::IsSetAlgo_program ( void  ) const

inline

Check if a value has been assigned to Algo_program data member.

Data member Algo_program is mandatory; its type is defined as 'typedef int TAlgo_program'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 334 of file Blast_db_mask_info_.hpp.

References CBlast_db_mask_info_Base::m_set_State.

Referenced by CBlast_db_mask_info_Base::CanGetAlgo_program(), and CBlast_db_mask_info_Base::SetAlgo_program().

IsSetBytes_to_cache()

bool CBlast_db_metadata_Base::IsSetBytes_to_cache ( void  ) const

inline

Check if a value has been assigned to Bytes_to_cache data member.

Data member Bytes_to_cache is mandatory; its type is defined as 'typedef Uint8 TBytes_to_cache'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1250 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::CanGetBytes_to_cache(), and CBlast_db_metadata_Base::SetBytes_to_cache().

IsSetBytes_total()

bool CBlast_db_metadata_Base::IsSetBytes_total ( void  ) const

inline

Check if a value has been assigned to Bytes_total data member.

Data member Bytes_total is mandatory; its type is defined as 'typedef Uint8 TBytes_total'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1203 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::CanGetBytes_total(), and CBlast_db_metadata_Base::SetBytes_total().

IsSetBytes_total_compressed()

bool CBlast_db_metadata_Base::IsSetBytes_total_compressed ( void  ) const

inline

Check if a value has been assigned to Bytes_total_compressed data member.

Data member Bytes_total_compressed is optional; its type is defined as 'typedef Uint8 TBytes_total_compressed'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1297 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::CanGetBytes_total_compressed(), and CBlast_db_metadata_Base::SetBytes_total_compressed().

IsSetCompressed_files()

bool CBlast_db_metadata_Base::IsSetCompressed_files ( void  ) const

inline

Check if a value has been assigned to Compressed_files data member.

Data member Compressed_files is optional; its type is defined as 'typedef vector< string > TCompressed_files'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1369 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_set_State.

IsSetDb_version()

bool CBlast_db_metadata_Base::IsSetDb_version ( void  ) const

inline

Default indicates the starting version Check if a value has been assigned to Db_version data member.

Data member Db_version is optional with default 5; its type is defined as 'typedef int TDb_version'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 871 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::SetDb_version().

IsSetDbname()

bool CBlast_db_metadata_Base::IsSetDbname ( void  ) const

inline

Check if a value has been assigned to Dbname data member.

Data member Dbname is mandatory; its type is defined as 'typedef string TDbname'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 777 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::CanGetDbname(), and CBlast_db_metadata_Base::SetDbname().

IsSetDbtype()

bool CBlast_db_metadata_Base::IsSetDbtype ( void  ) const

inline

Check if a value has been assigned to Dbtype data member.

Data member Dbtype is mandatory; its type is defined as 'typedef string TDbtype'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 824 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::CanGetDbtype(), and CBlast_db_metadata_Base::SetDbtype().

IsSetDescription()

bool CBlast_db_metadata_Base::IsSetDescription ( void  ) const

inline

Check if a value has been assigned to Description data member.

Data member Description is optional; its type is defined as 'typedef string TDescription'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 921 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::CanGetDescription(), and CBlast_db_metadata_Base::SetDescription().

IsSetFiles()

bool CBlast_db_metadata_Base::IsSetFiles ( void  ) const

inline

Check if a value has been assigned to Files data member.

Data member Files is optional; its type is defined as 'typedef vector< string > TFiles'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1344 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_set_State.

IsSetLast_updated()

bool CBlast_db_metadata_Base::IsSetLast_updated ( void  ) const

inline

Check if a value has been assigned to Last_updated data member.

Data member Last_updated is mandatory; its type is defined as 'typedef string TLast_updated'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1062 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::CanGetLast_updated(), and CBlast_db_metadata_Base::SetLast_updated().

IsSetLinks()

bool CBlast_def_line_Base::IsSetLinks ( void  ) const

inline

Check if a value has been assigned to Links data member.

Data member Links is optional; its type is defined as 'typedef list< int > TLinks'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 493 of file Blast_def_line_.hpp.

References CBlast_def_line_Base::m_set_State.

Referenced by BOOST_AUTO_TEST_CASE(), CBlast_def_line::GetLeafTaxIds(), CBlast_def_line::GetTaxIds(), s_IncludeDefline_Taxid(), and s_IncludeDeflineTaxid().

IsSetMasks() [1/2]

bool CBlast_db_mask_info_Base::IsSetMasks ( void  ) const

inline

This object was originally created to allow pagination of the sequence masks, but this feature was discontinued in 01/21/2010 Check if a value has been assigned to Masks data member.

Data member Masks is mandatory; its type is defined as 'typedef CBlast_mask_list TMasks'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 428 of file Blast_db_mask_info_.hpp.

References CBlast_db_mask_info_Base::m_Masks.

IsSetMasks() [2/2]

bool CBlast_mask_list_Base::IsSetMasks ( void  ) const

inline

masks for a single sequence should be grouped in a Packed-seqint Check if a value has been assigned to Masks data member.

Data member Masks is mandatory; its type is defined as 'typedef list< CRef< CSeq_loc > > TMasks'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 199 of file Blast_mask_list_.hpp.

References CBlast_mask_list_Base::m_set_State.

IsSetMemberships()

bool CBlast_def_line_Base::IsSetMemberships ( void  ) const

inline

bit arrays Repurposed to store the (multiple) taxIDs associated with WP proteins.

Check if a value has been assigned to Memberships data member.

Data member Memberships is optional; its type is defined as 'typedef list< int > TMemberships'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 468 of file Blast_def_line_.hpp.

References CBlast_def_line_Base::m_set_State.

Referenced by CSeqDBVol::x_GetFilteredHeader().

IsSetMore()

bool CBlast_mask_list_Base::IsSetMore ( void  ) const

inline

as of 01/21/2010, this field is set to false always, indicating that the entire object (set of Seq-loc) is contained in this object Check if a value has been assigned to More data member.

Data member More is mandatory; its type is defined as 'typedef bool TMore'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 224 of file Blast_mask_list_.hpp.

References CBlast_mask_list_Base::m_set_State.

Referenced by CBlast_mask_list_Base::CanGetMore(), and CBlast_mask_list_Base::SetMore().

IsSetNumber_of_letters()

bool CBlast_db_metadata_Base::IsSetNumber_of_letters ( void  ) const

inline

Check if a value has been assigned to Number_of_letters data member.

Data member Number_of_letters is mandatory; its type is defined as 'typedef Uint8 TNumber_of_letters'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 968 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::CanGetNumber_of_letters(), and CBlast_db_metadata_Base::SetNumber_of_letters().

IsSetNumber_of_sequences()

bool CBlast_db_metadata_Base::IsSetNumber_of_sequences ( void  ) const

inline

Check if a value has been assigned to Number_of_sequences data member.

Data member Number_of_sequences is mandatory; its type is defined as 'typedef Int8 TNumber_of_sequences'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1015 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::CanGetNumber_of_sequences(), and CBlast_db_metadata_Base::SetNumber_of_sequences().

IsSetNumber_of_taxids()

bool CBlast_db_metadata_Base::IsSetNumber_of_taxids ( void  ) const

inline

Check if a value has been assigned to Number_of_taxids data member.

Data member Number_of_taxids is optional; its type is defined as 'typedef int TNumber_of_taxids'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1156 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::CanGetNumber_of_taxids(), and CBlast_db_metadata_Base::SetNumber_of_taxids().

IsSetNumber_of_volumes()

bool CBlast_db_metadata_Base::IsSetNumber_of_volumes ( void  ) const

inline

Check if a value has been assigned to Number_of_volumes data member.

Data member Number_of_volumes is mandatory; its type is defined as 'typedef int TNumber_of_volumes'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1109 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::CanGetNumber_of_volumes(), and CBlast_db_metadata_Base::SetNumber_of_volumes().

IsSetOther_info()

bool CBlast_def_line_Base::IsSetOther_info ( void  ) const

inline

In proteins this stores the PIG, in nucleotides this stores the "origin GIs" (if one sequence is described in the ASN.1 as an identical copy of another) Check if a value has been assigned to Other_info data member.

Data member Other_info is optional; its type is defined as 'typedef list< int > TOther_info'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 518 of file Blast_def_line_.hpp.

References CBlast_def_line_Base::m_set_State.

Referenced by CBuildDatabase::x_AddPig().

IsSetSeqid()

bool CBlast_def_line_Base::IsSetSeqid ( void  ) const

inline

Regular NCBI Seq-Id taxonomy id, should not be set if multiple taxids are available (see links below) Check if a value has been assigned to Seqid data member.

Data member Seqid is mandatory; its type is defined as 'typedef list< CRef< CSeq_id > > TSeqid'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 396 of file Blast_def_line_.hpp.

References CBlast_def_line_Base::m_set_State.

IsSetTaxid()

bool CBlast_def_line_Base::IsSetTaxid ( void  ) const

inline

Check if a value has been assigned to Taxid data member.

Data member Taxid is optional; its type is defined as 'typedef NCBI_NS_NCBI::TTaxId TTaxid'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 421 of file Blast_def_line_.hpp.

References CBlast_def_line_Base::m_set_State.

Referenced by BOOST_AUTO_TEST_CASE(), CBlast_def_line_Base::CanGetTaxid(), s_IncludeDefline_Taxid(), s_IncludeDeflineTaxid(), s_SeqAlignToXMLHit(), CBlast_def_line_Base::SetTaxid(), and CBlast_def_line::SetTaxIds().

IsSetTitle()

bool CBlast_def_line_Base::IsSetTitle ( void  ) const

inline

simple title Check if a value has been assigned to Title data member.

Data member Title is optional; its type is defined as 'typedef string TTitle'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 349 of file Blast_def_line_.hpp.

References CBlast_def_line_Base::m_set_State.

Referenced by CBlast_def_line_Base::CanGetTitle(), s_SeqAlignToXMLHit(), and CBlast_def_line_Base::SetTitle().

IsSetVersion()

bool CBlast_db_metadata_Base::IsSetVersion ( void  ) const

inline

Default indicates the starting version Check if a value has been assigned to Version data member.

Data member Version is optional with default "1.2"; its type is defined as 'typedef string TVersion'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 720 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::SetVersion().

operator const Tdata &()

CBlast_def_line_set_Base::operator const CBlast_def_line_set_Base::Tdata & ( void  ) const

inline

Conversion operator to 'const Tdata' type.

Definition at line 178 of file Blast_def_line_set_.hpp.

operator Tdata &()

CBlast_def_line_set_Base::operator CBlast_def_line_set_Base::Tdata & ( void  )

inline

Conversion operator to 'Tdata' type.

Definition at line 184 of file Blast_def_line_set_.hpp.

operator=() [1/8]

CBlast_db_mask_info& CBlast_db_mask_info::operator= ( const CBlast_db_mask_info &  value )

private

operator=() [2/8]

CBlast_db_mask_info_Base& CBlast_db_mask_info_Base::operator= ( const CBlast_db_mask_info_Base &  )

private

operator=() [3/8]

CBlast_db_metadata& CBlast_db_metadata::operator= ( const CBlast_db_metadata &  value )

private

operator=() [4/8]

CBlast_db_metadata_Base& CBlast_db_metadata_Base::operator= ( const CBlast_db_metadata_Base &  )

private

operator=() [5/8]

CBlast_def_line_Base& CBlast_def_line_Base::operator= ( const CBlast_def_line_Base &  )

private

operator=() [6/8]

CBlast_def_line_set_Base& CBlast_def_line_set_Base::operator= ( const CBlast_def_line_set_Base &  )

private

operator=() [7/8]

CBlast_mask_list& CBlast_mask_list::operator= ( const CBlast_mask_list &  value )

private

operator=() [8/8]

CBlast_mask_list_Base& CBlast_mask_list_Base::operator= ( const CBlast_mask_list_Base &  )

private

Reset() [1/5]

void CBlast_db_mask_info_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 71 of file Blast_db_mask_info_.cpp.

References CBlast_db_mask_info_Base::ResetAlgo_id(), CBlast_db_mask_info_Base::ResetAlgo_options(), CBlast_db_mask_info_Base::ResetAlgo_program(), and CBlast_db_mask_info_Base::ResetMasks().

Reset() [2/5]

void CBlast_db_metadata_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 86 of file Blast_db_metadata_.cpp.

References CBlast_db_metadata_Base::ResetBytes_to_cache(), CBlast_db_metadata_Base::ResetBytes_total(), CBlast_db_metadata_Base::ResetBytes_total_compressed(), CBlast_db_metadata_Base::ResetCompressed_files(), CBlast_db_metadata_Base::ResetDb_version(), CBlast_db_metadata_Base::ResetDbname(), CBlast_db_metadata_Base::ResetDbtype(), CBlast_db_metadata_Base::ResetDescription(), CBlast_db_metadata_Base::ResetFiles(), CBlast_db_metadata_Base::ResetLast_updated(), CBlast_db_metadata_Base::ResetNumber_of_letters(), CBlast_db_metadata_Base::ResetNumber_of_sequences(), CBlast_db_metadata_Base::ResetNumber_of_taxids(), CBlast_db_metadata_Base::ResetNumber_of_volumes(), and CBlast_db_metadata_Base::ResetVersion().

Reset() [3/5]

void CBlast_def_line_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 81 of file Blast_def_line_.cpp.

References CBlast_def_line_Base::ResetLinks(), CBlast_def_line_Base::ResetMemberships(), CBlast_def_line_Base::ResetOther_info(), CBlast_def_line_Base::ResetSeqid(), CBlast_def_line_Base::ResetTaxid(), and CBlast_def_line_Base::ResetTitle().

Reset() [4/5]

void CBlast_def_line_set_Base::Reset

(

void

)

Reset data member.

Definition at line 51 of file Blast_def_line_set_.cpp.

References CBlast_def_line_set_Base::m_data, and CBlast_def_line_set_Base::m_set_State.

Reset() [5/5]

void CBlast_mask_list_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 57 of file Blast_mask_list_.cpp.

References CBlast_mask_list_Base::ResetMasks(), and CBlast_mask_list_Base::ResetMore().

ResetAlgo_id()

void CBlast_db_mask_info_Base::ResetAlgo_id ( void  )

inline

Reset Algo_id data member.

Definition at line 299 of file Blast_db_mask_info_.hpp.

References CBlast_db_mask_info_Base::m_Algo_id, and CBlast_db_mask_info_Base::m_set_State.

Referenced by CBlast_db_mask_info_Base::Reset().

ResetAlgo_options()

void CBlast_db_mask_info_Base::ResetAlgo_options

(

void

)

Reset Algo_options data member.

Definition at line 51 of file Blast_db_mask_info_.cpp.

References CBlast_db_mask_info_Base::m_Algo_options, and CBlast_db_mask_info_Base::m_set_State.

Referenced by CBlast_db_mask_info_Base::Reset().

ResetAlgo_program()

void CBlast_db_mask_info_Base::ResetAlgo_program ( void  )

inline

Reset Algo_program data member.

Definition at line 346 of file Blast_db_mask_info_.hpp.

References int, CBlast_db_mask_info_Base::m_Algo_program, and CBlast_db_mask_info_Base::m_set_State.

Referenced by CBlast_db_mask_info_Base::Reset().

ResetBytes_to_cache()

void CBlast_db_metadata_Base::ResetBytes_to_cache ( void  )

inline

Reset Bytes_to_cache data member.

Definition at line 1262 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Bytes_to_cache, and CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::Reset().

ResetBytes_total()

void CBlast_db_metadata_Base::ResetBytes_total ( void  )

inline

Reset Bytes_total data member.

Definition at line 1215 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Bytes_total, and CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::Reset().

ResetBytes_total_compressed()

void CBlast_db_metadata_Base::ResetBytes_total_compressed ( void  )

inline

Reset Bytes_total_compressed data member.

Definition at line 1309 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Bytes_total_compressed, and CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::Reset().

ResetCompressed_files()

void CBlast_db_metadata_Base::ResetCompressed_files

(

void

)

Reset Compressed_files data member.

Definition at line 80 of file Blast_db_metadata_.cpp.

References CBlast_db_metadata_Base::m_Compressed_files, and CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::Reset().

ResetDb_version()

void CBlast_db_metadata_Base::ResetDb_version ( void  )

inline

Reset Db_version data member.

Definition at line 883 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Db_version, and CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::Reset(), and CBlast_db_metadata_Base::SetDefaultDb_version().

ResetDbname()

void CBlast_db_metadata_Base::ResetDbname

(

void

)

Reset Dbname data member.

Definition at line 50 of file Blast_db_metadata_.cpp.

References CBlast_db_metadata_Base::m_Dbname, and CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::Reset().

ResetDbtype()

void CBlast_db_metadata_Base::ResetDbtype

(

void

)

Reset Dbtype data member.

Definition at line 56 of file Blast_db_metadata_.cpp.

References CBlast_db_metadata_Base::m_Dbtype, and CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::Reset().

ResetDescription()

void CBlast_db_metadata_Base::ResetDescription

(

void

)

Reset Description data member.

Definition at line 62 of file Blast_db_metadata_.cpp.

References CBlast_db_metadata_Base::m_Description, and CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::Reset().

ResetFiles()

void CBlast_db_metadata_Base::ResetFiles

(

void

)

Reset Files data member.

Definition at line 74 of file Blast_db_metadata_.cpp.

References CBlast_db_metadata_Base::m_Files, and CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::Reset().

ResetLast_updated()

void CBlast_db_metadata_Base::ResetLast_updated

(

void

)

Reset Last_updated data member.

Definition at line 68 of file Blast_db_metadata_.cpp.

References CBlast_db_metadata_Base::m_Last_updated, and CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::Reset().

ResetLinks()

void CBlast_def_line_Base::ResetLinks

(

void

)

Reset Links data member.

Definition at line 69 of file Blast_def_line_.cpp.

References CBlast_def_line_Base::m_Links, and CBlast_def_line_Base::m_set_State.

Referenced by BOOST_AUTO_TEST_CASE(), CBlast_def_line_Base::Reset(), CBlast_def_line::SetLeafTaxIds(), and CBlast_def_line::SetTaxIds().

ResetMasks() [1/2]

void CBlast_db_mask_info_Base::ResetMasks

(

void

)

Reset Masks data member.

Definition at line 57 of file Blast_db_mask_info_.cpp.

References CBlast_db_mask_info_Base::m_Masks.

Referenced by CBlast_db_mask_info_Base::CBlast_db_mask_info_Base(), CBlast_db_mask_info_Base::GetMasks(), CBlast_db_mask_info_Base::Reset(), and CBlast_db_mask_info_Base::SetMasks().

ResetMasks() [2/2]

void CBlast_mask_list_Base::ResetMasks

(

void

)

Reset Masks data member.

Definition at line 51 of file Blast_mask_list_.cpp.

References CBlast_mask_list_Base::m_Masks, and CBlast_mask_list_Base::m_set_State.

Referenced by CBlast_mask_list_Base::Reset().

ResetMemberships()

void CBlast_def_line_Base::ResetMemberships

(

void

)

Reset Memberships data member.

Definition at line 63 of file Blast_def_line_.cpp.

References CBlast_def_line_Base::m_Memberships, and CBlast_def_line_Base::m_set_State.

Referenced by CBlast_def_line_Base::Reset().

ResetMore()

void CBlast_mask_list_Base::ResetMore ( void  )

inline

Reset More data member.

Definition at line 236 of file Blast_mask_list_.hpp.

References CBlast_mask_list_Base::m_More, and CBlast_mask_list_Base::m_set_State.

Referenced by CBlast_mask_list_Base::Reset().

ResetNumber_of_letters()

void CBlast_db_metadata_Base::ResetNumber_of_letters ( void  )

inline

Reset Number_of_letters data member.

Definition at line 980 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Number_of_letters, and CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::Reset().

ResetNumber_of_sequences()

void CBlast_db_metadata_Base::ResetNumber_of_sequences ( void  )

inline

Reset Number_of_sequences data member.

Definition at line 1027 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Number_of_sequences, and CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::Reset().

ResetNumber_of_taxids()

void CBlast_db_metadata_Base::ResetNumber_of_taxids ( void  )

inline

Reset Number_of_taxids data member.

Definition at line 1168 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Number_of_taxids, and CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::Reset().

ResetNumber_of_volumes()

void CBlast_db_metadata_Base::ResetNumber_of_volumes ( void  )

inline

Reset Number_of_volumes data member.

Definition at line 1121 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Number_of_volumes, and CBlast_db_metadata_Base::m_set_State.

Referenced by CBlast_db_metadata_Base::Reset().

ResetOther_info()

void CBlast_def_line_Base::ResetOther_info

(

void

)

Reset Other_info data member.

Definition at line 75 of file Blast_def_line_.cpp.

References CBlast_def_line_Base::m_Other_info, and CBlast_def_line_Base::m_set_State.

Referenced by CBlast_def_line_Base::Reset().

ResetSeqid()

void CBlast_def_line_Base::ResetSeqid

(

void

)

Reset Seqid data member.

Definition at line 57 of file Blast_def_line_.cpp.

References CBlast_def_line_Base::m_Seqid, and CBlast_def_line_Base::m_set_State.

Referenced by CBlast_def_line_Base::Reset().

ResetTaxid()

void CBlast_def_line_Base::ResetTaxid ( void  )

inline

Reset Taxid data member.

Definition at line 433 of file Blast_def_line_.hpp.

References CBlast_def_line_Base::m_set_State, and CBlast_def_line_Base::m_Taxid.

Referenced by BOOST_AUTO_TEST_CASE(), CBlast_def_line_Base::Reset(), and CBlast_def_line::SetTaxIds().

ResetTitle()

void CBlast_def_line_Base::ResetTitle

(

void

)

Reset Title data member.

Definition at line 51 of file Blast_def_line_.cpp.

References CBlast_def_line_Base::m_set_State, and CBlast_def_line_Base::m_Title.

Referenced by CBlast_def_line_Base::Reset().

ResetVersion()

void CBlast_db_metadata_Base::ResetVersion ( void  )

inline

Reset Version data member.

Definition at line 732 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_set_State, and CBlast_db_metadata_Base::m_Version.

Referenced by CBlast_db_metadata_Base::Reset(), and CBlast_db_metadata_Base::SetDefaultVersion().

Set()

CBlast_def_line_set_Base::Tdata & CBlast_def_line_set_Base::Set ( void  )

inline

Assign a value to data member.

Returns

Reference to the data value.

Definition at line 171 of file Blast_def_line_set_.hpp.

References CBlast_def_line_set_Base::m_data, and CBlast_def_line_set_Base::m_set_State.

Referenced by BOOST_AUTO_TEST_CASE(), CSeqDBVol::GetBioseq(), CClusterDBSource::GetNext(), CBlast_def_line_set::PutTargetGiFirst(), CBlast_def_line_set::RemoveGIs(), s_CheckEmptyLists(), s_ExtractSeqIds(), s_GenerateBlastDefline(), s_LimitDeflines(), s_MakeRandomDeflineSet(), CBlast_def_line_set::SortBySeqIdRank(), CDUpdater::SplitBioseqByBlastDefline(), CWriteDB_Impl::x_BuildDeflinesFromBioseq(), CWriteDB_Impl::x_ExtractDeflines(), CWriteDB_Impl::x_GetFastaReaderDeflines(), CSeqDBVol::x_GetFilteredHeader(), CSeqDBVol::x_GetHdrAsn1(), and CSeqDBVol::x_GetTaxDefline().

SetAlgo_id() [1/2]

void CBlast_db_mask_info_Base::SetAlgo_id ( CBlast_db_mask_info_Base::TAlgo_id  value )

inline

Assign a value to Algo_id data member.

Parameters

value

Value to assign

Definition at line 315 of file Blast_db_mask_info_.hpp.

References CBlast_db_mask_info_Base::m_Algo_id, CBlast_db_mask_info_Base::m_set_State, and rapidjson::value.

SetAlgo_id() [2/2]

CBlast_db_mask_info_Base::TAlgo_id & CBlast_db_mask_info_Base::SetAlgo_id ( void  )

inline

Assign a value to Algo_id data member.

Returns

Reference to the data value.

Definition at line 322 of file Blast_db_mask_info_.hpp.

References CBlast_db_mask_info_Base::IsSetAlgo_id(), CBlast_db_mask_info_Base::m_Algo_id, CBlast_db_mask_info_Base::m_set_State, and CSerialObject::UnassignedByte().

SetAlgo_options() [1/3]

void CBlast_db_mask_info_Base::SetAlgo_options ( const TAlgo_options &  value )

inline

Assign a value to Algo_options data member.

Parameters

value

Value to assign

Definition at line 402 of file Blast_db_mask_info_.hpp.

References CBlast_db_mask_info_Base::m_Algo_options, CBlast_db_mask_info_Base::m_set_State, and rapidjson::value.

SetAlgo_options() [2/3]

void CBlast_db_mask_info_Base::SetAlgo_options ( CBlast_db_mask_info_Base::TAlgo_options &&  value )

inline

Definition at line 409 of file Blast_db_mask_info_.hpp.

References CBlast_db_mask_info_Base::m_Algo_options, CBlast_db_mask_info_Base::m_set_State, and rapidjson::value.

SetAlgo_options() [3/3]

CBlast_db_mask_info_Base::TAlgo_options & CBlast_db_mask_info_Base::SetAlgo_options ( void  )

inline

Assign a value to Algo_options data member.

Returns

Reference to the data value.

Definition at line 416 of file Blast_db_mask_info_.hpp.

References CBlast_db_mask_info_Base::IsSetAlgo_options(), CBlast_db_mask_info_Base::m_Algo_options, CBlast_db_mask_info_Base::m_set_State, and CSerialObject::UnassignedString().

SetAlgo_program() [1/2]

void CBlast_db_mask_info_Base::SetAlgo_program ( CBlast_db_mask_info_Base::TAlgo_program  value )

inline

Assign a value to Algo_program data member.

Parameters

value

Value to assign

Definition at line 362 of file Blast_db_mask_info_.hpp.

References CBlast_db_mask_info_Base::m_Algo_program, CBlast_db_mask_info_Base::m_set_State, and rapidjson::value.

SetAlgo_program() [2/2]

CBlast_db_mask_info_Base::TAlgo_program & CBlast_db_mask_info_Base::SetAlgo_program ( void  )

inline

Assign a value to Algo_program data member.

Returns

Reference to the data value.

Definition at line 369 of file Blast_db_mask_info_.hpp.

References CBlast_db_mask_info_Base::IsSetAlgo_program(), CBlast_db_mask_info_Base::m_Algo_program, CBlast_db_mask_info_Base::m_set_State, and CSerialObject::UnassignedByte().

SetBytes_to_cache() [1/2]

void CBlast_db_metadata_Base::SetBytes_to_cache ( CBlast_db_metadata_Base::TBytes_to_cache  value )

inline

Assign a value to Bytes_to_cache data member.

Parameters

value

Value to assign

Definition at line 1278 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Bytes_to_cache, CBlast_db_metadata_Base::m_set_State, and rapidjson::value.

SetBytes_to_cache() [2/2]

CBlast_db_metadata_Base::TBytes_to_cache & CBlast_db_metadata_Base::SetBytes_to_cache ( void  )

inline

Assign a value to Bytes_to_cache data member.

Returns

Reference to the data value.

Definition at line 1285 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::IsSetBytes_to_cache(), CBlast_db_metadata_Base::m_Bytes_to_cache, CBlast_db_metadata_Base::m_set_State, and CSerialObject::UnassignedByte().

SetBytes_total() [1/2]

void CBlast_db_metadata_Base::SetBytes_total ( CBlast_db_metadata_Base::TBytes_total  value )

inline

Assign a value to Bytes_total data member.

Parameters

value

Value to assign

Definition at line 1231 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Bytes_total, CBlast_db_metadata_Base::m_set_State, and rapidjson::value.

SetBytes_total() [2/2]

CBlast_db_metadata_Base::TBytes_total & CBlast_db_metadata_Base::SetBytes_total ( void  )

inline

Assign a value to Bytes_total data member.

Returns

Reference to the data value.

Definition at line 1238 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::IsSetBytes_total(), CBlast_db_metadata_Base::m_Bytes_total, CBlast_db_metadata_Base::m_set_State, and CSerialObject::UnassignedByte().

SetBytes_total_compressed() [1/2]

void CBlast_db_metadata_Base::SetBytes_total_compressed ( CBlast_db_metadata_Base::TBytes_total_compressed  value )

inline

Assign a value to Bytes_total_compressed data member.

Parameters

value

Value to assign

Definition at line 1325 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Bytes_total_compressed, CBlast_db_metadata_Base::m_set_State, and rapidjson::value.

SetBytes_total_compressed() [2/2]

CBlast_db_metadata_Base::TBytes_total_compressed & CBlast_db_metadata_Base::SetBytes_total_compressed ( void  )

inline

Assign a value to Bytes_total_compressed data member.

Returns

Reference to the data value.

Definition at line 1332 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::IsSetBytes_total_compressed(), CBlast_db_metadata_Base::m_Bytes_total_compressed, CBlast_db_metadata_Base::m_set_State, and CSerialObject::UnassignedByte().

SetCompressed_files()

CBlast_db_metadata_Base::TCompressed_files & CBlast_db_metadata_Base::SetCompressed_files ( void  )

inline

Assign a value to Compressed_files data member.

Returns

Reference to the data value.

Definition at line 1387 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Compressed_files, and CBlast_db_metadata_Base::m_set_State.

SetDb_version() [1/2]

void CBlast_db_metadata_Base::SetDb_version ( CBlast_db_metadata_Base::TDb_version  value )

inline

Assign a value to Db_version data member.

Parameters

value

Value to assign

Definition at line 902 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Db_version, CBlast_db_metadata_Base::m_set_State, and rapidjson::value.

SetDb_version() [2/2]

CBlast_db_metadata_Base::TDb_version & CBlast_db_metadata_Base::SetDb_version ( void  )

inline

Assign a value to Db_version data member.

Returns

Reference to the data value.

Definition at line 909 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::IsSetDb_version(), CBlast_db_metadata_Base::m_Db_version, CBlast_db_metadata_Base::m_set_State, and CSerialObject::UnassignedByte().

SetDbname() [1/3]

void CBlast_db_metadata_Base::SetDbname ( const TDbname &  value )

inline

Assign a value to Dbname data member.

Parameters

value

Value to assign

Definition at line 798 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Dbname, CBlast_db_metadata_Base::m_set_State, and rapidjson::value.

SetDbname() [2/3]

void CBlast_db_metadata_Base::SetDbname ( CBlast_db_metadata_Base::TDbname &&  value )

inline

Definition at line 805 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Dbname, CBlast_db_metadata_Base::m_set_State, and rapidjson::value.

SetDbname() [3/3]

CBlast_db_metadata_Base::TDbname & CBlast_db_metadata_Base::SetDbname ( void  )

inline

Assign a value to Dbname data member.

Returns

Reference to the data value.

Definition at line 812 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::IsSetDbname(), CBlast_db_metadata_Base::m_Dbname, CBlast_db_metadata_Base::m_set_State, and CSerialObject::UnassignedString().

SetDbtype() [1/3]

void CBlast_db_metadata_Base::SetDbtype ( const TDbtype &  value )

inline

Assign a value to Dbtype data member.

Parameters

value

Value to assign

Definition at line 845 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Dbtype, CBlast_db_metadata_Base::m_set_State, and rapidjson::value.

SetDbtype() [2/3]

void CBlast_db_metadata_Base::SetDbtype ( CBlast_db_metadata_Base::TDbtype &&  value )

inline

Definition at line 852 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Dbtype, CBlast_db_metadata_Base::m_set_State, and rapidjson::value.

SetDbtype() [3/3]

CBlast_db_metadata_Base::TDbtype & CBlast_db_metadata_Base::SetDbtype ( void  )

inline

Assign a value to Dbtype data member.

Returns

Reference to the data value.

Definition at line 859 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::IsSetDbtype(), CBlast_db_metadata_Base::m_Dbtype, CBlast_db_metadata_Base::m_set_State, and CSerialObject::UnassignedString().

SetDefaultDb_version()

void CBlast_db_metadata_Base::SetDefaultDb_version ( void  )

inline

Assign default value to Db_version data member.

Definition at line 890 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::ResetDb_version().

SetDefaultVersion()

void CBlast_db_metadata_Base::SetDefaultVersion ( void  )

inline

Assign default value to Version data member.

Definition at line 739 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::ResetVersion().

SetDescription() [1/3]

void CBlast_db_metadata_Base::SetDescription ( const TDescription &  value )

inline

Assign a value to Description data member.

Parameters

value

Value to assign

Definition at line 942 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Description, CBlast_db_metadata_Base::m_set_State, and rapidjson::value.

SetDescription() [2/3]

void CBlast_db_metadata_Base::SetDescription ( CBlast_db_metadata_Base::TDescription &&  value )

inline

Definition at line 949 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Description, CBlast_db_metadata_Base::m_set_State, and rapidjson::value.

SetDescription() [3/3]

CBlast_db_metadata_Base::TDescription & CBlast_db_metadata_Base::SetDescription ( void  )

inline

Assign a value to Description data member.

Returns

Reference to the data value.

Definition at line 956 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::IsSetDescription(), CBlast_db_metadata_Base::m_Description, CBlast_db_metadata_Base::m_set_State, and CSerialObject::UnassignedString().

SetFiles()

CBlast_db_metadata_Base::TFiles & CBlast_db_metadata_Base::SetFiles ( void  )

inline

Assign a value to Files data member.

Returns

Reference to the data value.

Definition at line 1362 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Files, and CBlast_db_metadata_Base::m_set_State.

SetLast_updated() [1/3]

void CBlast_db_metadata_Base::SetLast_updated ( const TLast_updated &  value )

inline

Assign a value to Last_updated data member.

Parameters

value

Value to assign

Definition at line 1083 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Last_updated, CBlast_db_metadata_Base::m_set_State, and rapidjson::value.

SetLast_updated() [2/3]

void CBlast_db_metadata_Base::SetLast_updated ( CBlast_db_metadata_Base::TLast_updated &&  value )

inline

Definition at line 1090 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Last_updated, CBlast_db_metadata_Base::m_set_State, and rapidjson::value.

SetLast_updated() [3/3]

CBlast_db_metadata_Base::TLast_updated & CBlast_db_metadata_Base::SetLast_updated ( void  )

inline

Assign a value to Last_updated data member.

Returns

Reference to the data value.

Definition at line 1097 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::IsSetLast_updated(), CBlast_db_metadata_Base::m_Last_updated, CBlast_db_metadata_Base::m_set_State, and CSerialObject::UnassignedString().

SetLinks()

CBlast_def_line_Base::TLinks & CBlast_def_line_Base::SetLinks ( void  )

inline

Assign a value to Links data member.

Returns

Reference to the data value.

Definition at line 511 of file Blast_def_line_.hpp.

References CBlast_def_line_Base::m_Links, and CBlast_def_line_Base::m_set_State.

Referenced by BOOST_AUTO_TEST_CASE(), CBlast_def_line::SetLeafTaxIds(), and CBlast_def_line::SetTaxIds().

SetMasks() [1/3]

void CBlast_db_mask_info_Base::SetMasks

(

CBlast_db_mask_info_Base::TMasks &

value

)

Assign a value to Masks data member.

Parameters

value

Reference to value.

Definition at line 66 of file Blast_db_mask_info_.cpp.

References CBlast_db_mask_info_Base::m_Masks, and rapidjson::value.

SetMasks() [2/3]

CBlast_db_mask_info_Base::TMasks & CBlast_db_mask_info_Base::SetMasks ( void  )

inline

Assign a value to Masks data member.

Returns

Reference to the data value.

Definition at line 449 of file Blast_db_mask_info_.hpp.

References CBlast_db_mask_info_Base::m_Masks, and CBlast_db_mask_info_Base::ResetMasks().

SetMasks() [3/3]

CBlast_mask_list_Base::TMasks & CBlast_mask_list_Base::SetMasks ( void  )

inline

Assign a value to Masks data member.

Returns

Reference to the data value.

Definition at line 217 of file Blast_mask_list_.hpp.

References CBlast_mask_list_Base::m_Masks, and CBlast_mask_list_Base::m_set_State.

Referenced by CMaskWriterBlastDbMaskInfo::Print().

SetMemberships()

CBlast_def_line_Base::TMemberships & CBlast_def_line_Base::SetMemberships ( void  )

inline

Assign a value to Memberships data member.

Returns

Reference to the data value.

Definition at line 486 of file Blast_def_line_.hpp.

References CBlast_def_line_Base::m_Memberships, and CBlast_def_line_Base::m_set_State.

SetMore() [1/2]

void CBlast_mask_list_Base::SetMore ( CBlast_mask_list_Base::TMore  value )

inline

Assign a value to More data member.

Parameters

value

Value to assign

Definition at line 252 of file Blast_mask_list_.hpp.

References CBlast_mask_list_Base::m_More, CBlast_mask_list_Base::m_set_State, and rapidjson::value.

Referenced by CMaskWriterBlastDbMaskInfo::Print().

SetMore() [2/2]

CBlast_mask_list_Base::TMore & CBlast_mask_list_Base::SetMore ( void  )

inline

Assign a value to More data member.

Returns

Reference to the data value.

Definition at line 259 of file Blast_mask_list_.hpp.

References CBlast_mask_list_Base::IsSetMore(), CBlast_mask_list_Base::m_More, CBlast_mask_list_Base::m_set_State, and CSerialObject::UnassignedByte().

SetNumber_of_letters() [1/2]

void CBlast_db_metadata_Base::SetNumber_of_letters ( CBlast_db_metadata_Base::TNumber_of_letters  value )

inline

Assign a value to Number_of_letters data member.

Parameters

value

Value to assign

Definition at line 996 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Number_of_letters, CBlast_db_metadata_Base::m_set_State, and rapidjson::value.

SetNumber_of_letters() [2/2]

CBlast_db_metadata_Base::TNumber_of_letters & CBlast_db_metadata_Base::SetNumber_of_letters ( void  )

inline

Assign a value to Number_of_letters data member.

Returns

Reference to the data value.

Definition at line 1003 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::IsSetNumber_of_letters(), CBlast_db_metadata_Base::m_Number_of_letters, CBlast_db_metadata_Base::m_set_State, and CSerialObject::UnassignedByte().

SetNumber_of_sequences() [1/2]

void CBlast_db_metadata_Base::SetNumber_of_sequences ( CBlast_db_metadata_Base::TNumber_of_sequences  value )

inline

Assign a value to Number_of_sequences data member.

Parameters

value

Value to assign

Definition at line 1043 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Number_of_sequences, CBlast_db_metadata_Base::m_set_State, and rapidjson::value.

SetNumber_of_sequences() [2/2]

CBlast_db_metadata_Base::TNumber_of_sequences & CBlast_db_metadata_Base::SetNumber_of_sequences ( void  )

inline

Assign a value to Number_of_sequences data member.

Returns

Reference to the data value.

Definition at line 1050 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::IsSetNumber_of_sequences(), CBlast_db_metadata_Base::m_Number_of_sequences, CBlast_db_metadata_Base::m_set_State, and CSerialObject::UnassignedByte().

SetNumber_of_taxids() [1/2]

void CBlast_db_metadata_Base::SetNumber_of_taxids ( CBlast_db_metadata_Base::TNumber_of_taxids  value )

inline

Assign a value to Number_of_taxids data member.

Parameters

value

Value to assign

Definition at line 1184 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Number_of_taxids, CBlast_db_metadata_Base::m_set_State, and rapidjson::value.

SetNumber_of_taxids() [2/2]

CBlast_db_metadata_Base::TNumber_of_taxids & CBlast_db_metadata_Base::SetNumber_of_taxids ( void  )

inline

Assign a value to Number_of_taxids data member.

Returns

Reference to the data value.

Definition at line 1191 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::IsSetNumber_of_taxids(), CBlast_db_metadata_Base::m_Number_of_taxids, CBlast_db_metadata_Base::m_set_State, and CSerialObject::UnassignedByte().

SetNumber_of_volumes() [1/2]

void CBlast_db_metadata_Base::SetNumber_of_volumes ( CBlast_db_metadata_Base::TNumber_of_volumes  value )

inline

Assign a value to Number_of_volumes data member.

Parameters

value

Value to assign

Definition at line 1137 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_Number_of_volumes, CBlast_db_metadata_Base::m_set_State, and rapidjson::value.

SetNumber_of_volumes() [2/2]

CBlast_db_metadata_Base::TNumber_of_volumes & CBlast_db_metadata_Base::SetNumber_of_volumes ( void  )

inline

Assign a value to Number_of_volumes data member.

Returns

Reference to the data value.

Definition at line 1144 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::IsSetNumber_of_volumes(), CBlast_db_metadata_Base::m_Number_of_volumes, CBlast_db_metadata_Base::m_set_State, and CSerialObject::UnassignedByte().

SetOther_info()

CBlast_def_line_Base::TOther_info & CBlast_def_line_Base::SetOther_info ( void  )

inline

Assign a value to Other_info data member.

Returns

Reference to the data value.

Definition at line 536 of file Blast_def_line_.hpp.

References CBlast_def_line_Base::m_Other_info, and CBlast_def_line_Base::m_set_State.

SetSeqid()

CBlast_def_line_Base::TSeqid & CBlast_def_line_Base::SetSeqid ( void  )

inline

Assign a value to Seqid data member.

Returns

Reference to the data value.

Definition at line 414 of file Blast_def_line_.hpp.

References CBlast_def_line_Base::m_Seqid, and CBlast_def_line_Base::m_set_State.

SetTaxid() [1/2]

void CBlast_def_line_Base::SetTaxid ( CBlast_def_line_Base::TTaxid  value )

inline

Assign a value to Taxid data member.

Parameters

value

Value to assign

Definition at line 449 of file Blast_def_line_.hpp.

References CBlast_def_line_Base::m_set_State, CBlast_def_line_Base::m_Taxid, and rapidjson::value.

Referenced by BOOST_AUTO_TEST_CASE().

SetTaxid() [2/2]

CBlast_def_line_Base::TTaxid & CBlast_def_line_Base::SetTaxid ( void  )

inline

Assign a value to Taxid data member.

Returns

Reference to the data value.

Definition at line 456 of file Blast_def_line_.hpp.

References CBlast_def_line_Base::IsSetTaxid(), CBlast_def_line_Base::m_set_State, CBlast_def_line_Base::m_Taxid, and CSerialObject::UnassignedByte().

Referenced by CBlast_def_line::SetTaxIds().

SetTitle() [1/3]

void CBlast_def_line_Base::SetTitle ( const TTitle &  value )

inline

Assign a value to Title data member.

Parameters

value

Value to assign

Definition at line 370 of file Blast_def_line_.hpp.

References CBlast_def_line_Base::m_set_State, CBlast_def_line_Base::m_Title, and rapidjson::value.

SetTitle() [2/3]

void CBlast_def_line_Base::SetTitle ( CBlast_def_line_Base::TTitle &&  value )

inline

Definition at line 377 of file Blast_def_line_.hpp.

References CBlast_def_line_Base::m_set_State, CBlast_def_line_Base::m_Title, and rapidjson::value.

SetTitle() [3/3]

CBlast_def_line_Base::TTitle & CBlast_def_line_Base::SetTitle ( void  )

inline

Assign a value to Title data member.

Returns

Reference to the data value.

Definition at line 384 of file Blast_def_line_.hpp.

References CBlast_def_line_Base::IsSetTitle(), CBlast_def_line_Base::m_set_State, CBlast_def_line_Base::m_Title, and CSerialObject::UnassignedString().

SetVersion() [1/3]

void CBlast_db_metadata_Base::SetVersion ( const TVersion &  value )

inline

Assign a value to Version data member.

Parameters

value

Value to assign

Definition at line 751 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_set_State, CBlast_db_metadata_Base::m_Version, and rapidjson::value.

SetVersion() [2/3]

void CBlast_db_metadata_Base::SetVersion ( CBlast_db_metadata_Base::TVersion &&  value )

inline

Definition at line 758 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::m_set_State, CBlast_db_metadata_Base::m_Version, and rapidjson::value.

SetVersion() [3/3]

CBlast_db_metadata_Base::TVersion & CBlast_db_metadata_Base::SetVersion ( void  )

inline

Assign a value to Version data member.

Returns

Reference to the data value.

Definition at line 765 of file Blast_db_metadata_.hpp.

References CBlast_db_metadata_Base::IsSetVersion(), CBlast_db_metadata_Base::m_set_State, CBlast_db_metadata_Base::m_Version, and CSerialObject::UnassignedString().

~CBlast_db_mask_info()

CBlast_db_mask_info::~CBlast_db_mask_info

(

void

)

Definition at line 50 of file Blast_db_mask_info.cpp.

~CBlast_db_mask_info_Base()

CBlast_db_mask_info_Base::~CBlast_db_mask_info_Base ( void  )

virtual

Definition at line 103 of file Blast_db_mask_info_.cpp.

~CBlast_db_metadata()

CBlast_db_metadata::~CBlast_db_metadata

(

void

)

Definition at line 50 of file Blast_db_metadata.cpp.

~CBlast_db_metadata_Base()

CBlast_db_metadata_Base::~CBlast_db_metadata_Base ( void  )

virtual

Definition at line 137 of file Blast_db_metadata_.cpp.

~CBlast_def_line_Base()

CBlast_def_line_Base::~CBlast_def_line_Base ( void  )

virtual

Definition at line 114 of file Blast_def_line_.cpp.

~CBlast_def_line_set_Base()

CBlast_def_line_set_Base::~CBlast_def_line_set_Base ( void  )

virtual

Definition at line 74 of file Blast_def_line_set_.cpp.

~CBlast_mask_list()

CBlast_mask_list::~CBlast_mask_list

(

void

)

Definition at line 50 of file Blast_mask_list.cpp.

~CBlast_mask_list_Base()

CBlast_mask_list_Base::~CBlast_mask_list_Base ( void  )

virtual

Definition at line 82 of file Blast_mask_list_.cpp.

Variable Documentation

m_Algo_id

int CBlast_db_mask_info_Base::m_Algo_id

private

Definition at line 271 of file Blast_db_mask_info_.hpp.

Referenced by CBlast_db_mask_info_Base::GetAlgo_id(), CBlast_db_mask_info_Base::ResetAlgo_id(), and CBlast_db_mask_info_Base::SetAlgo_id().

m_Algo_options

string CBlast_db_mask_info_Base::m_Algo_options

private

Definition at line 273 of file Blast_db_mask_info_.hpp.

Referenced by CBlast_db_mask_info_Base::GetAlgo_options(), CBlast_db_mask_info_Base::ResetAlgo_options(), and CBlast_db_mask_info_Base::SetAlgo_options().

m_Algo_program

int CBlast_db_mask_info_Base::m_Algo_program

private

Definition at line 272 of file Blast_db_mask_info_.hpp.

Referenced by CBlast_db_mask_info_Base::GetAlgo_program(), CBlast_db_mask_info_Base::ResetAlgo_program(), and CBlast_db_mask_info_Base::SetAlgo_program().

m_Bytes_to_cache

Uint8 CBlast_db_metadata_Base::m_Bytes_to_cache

private

Definition at line 704 of file Blast_db_metadata_.hpp.

Referenced by CBlast_db_metadata_Base::GetBytes_to_cache(), CBlast_db_metadata_Base::ResetBytes_to_cache(), and CBlast_db_metadata_Base::SetBytes_to_cache().

m_Bytes_total

Uint8 CBlast_db_metadata_Base::m_Bytes_total

private

Definition at line 703 of file Blast_db_metadata_.hpp.

Referenced by CBlast_db_metadata_Base::GetBytes_total(), CBlast_db_metadata_Base::ResetBytes_total(), and CBlast_db_metadata_Base::SetBytes_total().

m_Bytes_total_compressed

Uint8 CBlast_db_metadata_Base::m_Bytes_total_compressed

private

Definition at line 705 of file Blast_db_metadata_.hpp.

Referenced by CBlast_db_metadata_Base::GetBytes_total_compressed(), CBlast_db_metadata_Base::ResetBytes_total_compressed(), and CBlast_db_metadata_Base::SetBytes_total_compressed().

m_Compressed_files

vector< string > CBlast_db_metadata_Base::m_Compressed_files

private

Definition at line 707 of file Blast_db_metadata_.hpp.

Referenced by CBlast_db_metadata_Base::GetCompressed_files(), CBlast_db_metadata_Base::ResetCompressed_files(), and CBlast_db_metadata_Base::SetCompressed_files().

m_data

list< CRef< CBlast_def_line > > CBlast_def_line_set_Base::m_data

private

Definition at line 140 of file Blast_def_line_set_.hpp.

Referenced by CBlast_def_line_set_Base::Get(), CBlast_def_line_set_Base::Reset(), and CBlast_def_line_set_Base::Set().

m_Db_version

int CBlast_db_metadata_Base::m_Db_version

private

Definition at line 696 of file Blast_db_metadata_.hpp.

Referenced by CBlast_db_metadata_Base::GetDb_version(), CBlast_db_metadata_Base::ResetDb_version(), and CBlast_db_metadata_Base::SetDb_version().

m_Dbname

string CBlast_db_metadata_Base::m_Dbname

private

Definition at line 694 of file Blast_db_metadata_.hpp.

Referenced by CBlast_db_metadata_Base::GetDbname(), CBlast_db_metadata_Base::ResetDbname(), and CBlast_db_metadata_Base::SetDbname().

m_Dbtype

string CBlast_db_metadata_Base::m_Dbtype

private

Definition at line 695 of file Blast_db_metadata_.hpp.

Referenced by CBlast_db_metadata_Base::GetDbtype(), CBlast_db_metadata_Base::ResetDbtype(), and CBlast_db_metadata_Base::SetDbtype().

m_Description

string CBlast_db_metadata_Base::m_Description

private

Definition at line 697 of file Blast_db_metadata_.hpp.

Referenced by CBlast_db_metadata_Base::GetDescription(), CBlast_db_metadata_Base::ResetDescription(), and CBlast_db_metadata_Base::SetDescription().

m_Files

vector< string > CBlast_db_metadata_Base::m_Files

private

Definition at line 706 of file Blast_db_metadata_.hpp.

Referenced by CBlast_db_metadata_Base::GetFiles(), CBlast_db_metadata_Base::ResetFiles(), and CBlast_db_metadata_Base::SetFiles().

m_Last_updated

string CBlast_db_metadata_Base::m_Last_updated

private

Definition at line 700 of file Blast_db_metadata_.hpp.

Referenced by CBlast_db_metadata_Base::GetLast_updated(), CBlast_db_metadata_Base::ResetLast_updated(), and CBlast_db_metadata_Base::SetLast_updated().

m_Links

list< int > CBlast_def_line_Base::m_Links

private

Definition at line 335 of file Blast_def_line_.hpp.

Referenced by CBlast_def_line_Base::GetLinks(), CBlast_def_line_Base::ResetLinks(), and CBlast_def_line_Base::SetLinks().

m_Masks [1/2]

CRef< TMasks > CBlast_db_mask_info_Base::m_Masks

private

Definition at line 274 of file Blast_db_mask_info_.hpp.

Referenced by CBlast_db_mask_info_Base::GetMasks(), CBlast_db_mask_info_Base::IsSetMasks(), CBlast_db_mask_info_Base::ResetMasks(), and CBlast_db_mask_info_Base::SetMasks().

m_Masks [2/2]

list< CRef< CSeq_loc > > CBlast_mask_list_Base::m_Masks

private

Definition at line 185 of file Blast_mask_list_.hpp.

Referenced by CBlast_mask_list_Base::GetMasks(), CBlast_mask_list_Base::ResetMasks(), and CBlast_mask_list_Base::SetMasks().

m_Memberships

list< int > CBlast_def_line_Base::m_Memberships

private

Definition at line 334 of file Blast_def_line_.hpp.

Referenced by CBlast_def_line_Base::GetMemberships(), CBlast_def_line_Base::ResetMemberships(), and CBlast_def_line_Base::SetMemberships().

m_More

bool CBlast_mask_list_Base::m_More

private

Definition at line 186 of file Blast_mask_list_.hpp.

Referenced by CBlast_mask_list_Base::GetMore(), CBlast_mask_list_Base::ResetMore(), and CBlast_mask_list_Base::SetMore().

m_Number_of_letters

Uint8 CBlast_db_metadata_Base::m_Number_of_letters

private

Definition at line 698 of file Blast_db_metadata_.hpp.

Referenced by CBlast_db_metadata_Base::GetNumber_of_letters(), CBlast_db_metadata_Base::ResetNumber_of_letters(), and CBlast_db_metadata_Base::SetNumber_of_letters().

m_Number_of_sequences

Int8 CBlast_db_metadata_Base::m_Number_of_sequences

private

Definition at line 699 of file Blast_db_metadata_.hpp.

Referenced by CBlast_db_metadata_Base::GetNumber_of_sequences(), CBlast_db_metadata_Base::ResetNumber_of_sequences(), and CBlast_db_metadata_Base::SetNumber_of_sequences().

m_Number_of_taxids

int CBlast_db_metadata_Base::m_Number_of_taxids

private

Definition at line 702 of file Blast_db_metadata_.hpp.

Referenced by CBlast_db_metadata_Base::GetNumber_of_taxids(), CBlast_db_metadata_Base::ResetNumber_of_taxids(), and CBlast_db_metadata_Base::SetNumber_of_taxids().

m_Number_of_volumes

int CBlast_db_metadata_Base::m_Number_of_volumes

private

Definition at line 701 of file Blast_db_metadata_.hpp.

Referenced by CBlast_db_metadata_Base::GetNumber_of_volumes(), CBlast_db_metadata_Base::ResetNumber_of_volumes(), and CBlast_db_metadata_Base::SetNumber_of_volumes().

m_Other_info

list< int > CBlast_def_line_Base::m_Other_info

private

Definition at line 336 of file Blast_def_line_.hpp.

Referenced by CBlast_def_line_Base::GetOther_info(), CBlast_def_line_Base::ResetOther_info(), and CBlast_def_line_Base::SetOther_info().

m_Seqid

list< CRef< CSeq_id > > CBlast_def_line_Base::m_Seqid

private

Definition at line 332 of file Blast_def_line_.hpp.

Referenced by CBlast_def_line_Base::GetSeqid(), CBlast_def_line_Base::ResetSeqid(), and CBlast_def_line_Base::SetSeqid().

m_set_State [1/5]

Uint4 CBlast_db_mask_info_Base::m_set_State[1]

private

Definition at line 270 of file Blast_db_mask_info_.hpp.

Referenced by CBlast_db_mask_info_Base::CBlast_db_mask_info_Base(), CBlast_db_mask_info_Base::IsSetAlgo_id(), CBlast_db_mask_info_Base::IsSetAlgo_options(), CBlast_db_mask_info_Base::IsSetAlgo_program(), CBlast_db_mask_info_Base::ResetAlgo_id(), CBlast_db_mask_info_Base::ResetAlgo_options(), CBlast_db_mask_info_Base::ResetAlgo_program(), CBlast_db_mask_info_Base::SetAlgo_id(), CBlast_db_mask_info_Base::SetAlgo_options(), and CBlast_db_mask_info_Base::SetAlgo_program().

m_set_State [2/5]

Uint4 CBlast_db_metadata_Base::m_set_State[1]

private

Definition at line 692 of file Blast_db_metadata_.hpp.

Referenced by CBlast_db_metadata_Base::CBlast_db_metadata_Base(), CBlast_db_metadata_Base::IsSetBytes_to_cache(), CBlast_db_metadata_Base::IsSetBytes_total(), CBlast_db_metadata_Base::IsSetBytes_total_compressed(), CBlast_db_metadata_Base::IsSetCompressed_files(), CBlast_db_metadata_Base::IsSetDb_version(), CBlast_db_metadata_Base::IsSetDbname(), CBlast_db_metadata_Base::IsSetDbtype(), CBlast_db_metadata_Base::IsSetDescription(), CBlast_db_metadata_Base::IsSetFiles(), CBlast_db_metadata_Base::IsSetLast_updated(), CBlast_db_metadata_Base::IsSetNumber_of_letters(), CBlast_db_metadata_Base::IsSetNumber_of_sequences(), CBlast_db_metadata_Base::IsSetNumber_of_taxids(), CBlast_db_metadata_Base::IsSetNumber_of_volumes(), CBlast_db_metadata_Base::IsSetVersion(), CBlast_db_metadata_Base::ResetBytes_to_cache(), CBlast_db_metadata_Base::ResetBytes_total(), CBlast_db_metadata_Base::ResetBytes_total_compressed(), CBlast_db_metadata_Base::ResetCompressed_files(), CBlast_db_metadata_Base::ResetDb_version(), CBlast_db_metadata_Base::ResetDbname(), CBlast_db_metadata_Base::ResetDbtype(), CBlast_db_metadata_Base::ResetDescription(), CBlast_db_metadata_Base::ResetFiles(), CBlast_db_metadata_Base::ResetLast_updated(), CBlast_db_metadata_Base::ResetNumber_of_letters(), CBlast_db_metadata_Base::ResetNumber_of_sequences(), CBlast_db_metadata_Base::ResetNumber_of_taxids(), CBlast_db_metadata_Base::ResetNumber_of_volumes(), CBlast_db_metadata_Base::ResetVersion(), CBlast_db_metadata_Base::SetBytes_to_cache(), CBlast_db_metadata_Base::SetBytes_total(), CBlast_db_metadata_Base::SetBytes_total_compressed(), CBlast_db_metadata_Base::SetCompressed_files(), CBlast_db_metadata_Base::SetDb_version(), CBlast_db_metadata_Base::SetDbname(), CBlast_db_metadata_Base::SetDbtype(), CBlast_db_metadata_Base::SetDescription(), CBlast_db_metadata_Base::SetFiles(), CBlast_db_metadata_Base::SetLast_updated(), CBlast_db_metadata_Base::SetNumber_of_letters(), CBlast_db_metadata_Base::SetNumber_of_sequences(), CBlast_db_metadata_Base::SetNumber_of_taxids(), CBlast_db_metadata_Base::SetNumber_of_volumes(), and CBlast_db_metadata_Base::SetVersion().

m_set_State [3/5]

Uint4 CBlast_def_line_Base::m_set_State[1]

private

Definition at line 330 of file Blast_def_line_.hpp.

Referenced by CBlast_def_line_Base::CBlast_def_line_Base(), CBlast_def_line_Base::IsSetLinks(), CBlast_def_line_Base::IsSetMemberships(), CBlast_def_line_Base::IsSetOther_info(), CBlast_def_line_Base::IsSetSeqid(), CBlast_def_line_Base::IsSetTaxid(), CBlast_def_line_Base::IsSetTitle(), CBlast_def_line_Base::ResetLinks(), CBlast_def_line_Base::ResetMemberships(), CBlast_def_line_Base::ResetOther_info(), CBlast_def_line_Base::ResetSeqid(), CBlast_def_line_Base::ResetTaxid(), CBlast_def_line_Base::ResetTitle(), CBlast_def_line_Base::SetLinks(), CBlast_def_line_Base::SetMemberships(), CBlast_def_line_Base::SetOther_info(), CBlast_def_line_Base::SetSeqid(), CBlast_def_line_Base::SetTaxid(), and CBlast_def_line_Base::SetTitle().

m_set_State [4/5]

Uint4 CBlast_def_line_set_Base::m_set_State[1]

private

Definition at line 139 of file Blast_def_line_set_.hpp.

Referenced by CBlast_def_line_set_Base::CBlast_def_line_set_Base(), CBlast_def_line_set_Base::IsSet(), CBlast_def_line_set_Base::Reset(), and CBlast_def_line_set_Base::Set().

m_set_State [5/5]

Uint4 CBlast_mask_list_Base::m_set_State[1]

private

Definition at line 184 of file Blast_mask_list_.hpp.

Referenced by CBlast_mask_list_Base::CBlast_mask_list_Base(), CBlast_mask_list_Base::IsSetMasks(), CBlast_mask_list_Base::IsSetMore(), CBlast_mask_list_Base::ResetMasks(), CBlast_mask_list_Base::ResetMore(), CBlast_mask_list_Base::SetMasks(), and CBlast_mask_list_Base::SetMore().

m_Taxid

int CBlast_def_line_Base::m_Taxid

private

Definition at line 333 of file Blast_def_line_.hpp.

Referenced by CBlast_def_line_Base::GetTaxid(), CBlast_def_line_Base::ResetTaxid(), and CBlast_def_line_Base::SetTaxid().

m_Title

string CBlast_def_line_Base::m_Title

private

Definition at line 331 of file Blast_def_line_.hpp.

Referenced by CBlast_def_line_Base::GetTitle(), CBlast_def_line_Base::ResetTitle(), and CBlast_def_line_Base::SetTitle().

m_Version

string CBlast_db_metadata_Base::m_Version

private

Definition at line 693 of file Blast_db_metadata_.hpp.

Referenced by CBlast_db_metadata_Base::GetVersion(), CBlast_db_metadata_Base::ResetVersion(), and CBlast_db_metadata_Base::SetVersion().