NCBI C++ ToolKit
Classes | Typedefs | Enumerations | Functions | Variables
Code generated by DATATOOL from 'blastxml.asn' (module 'NCBI-BlastOutput')
+ Collaboration diagram for Code generated by DATATOOL from 'blastxml.asn' (module 'NCBI-BlastOutput'):

Classes

class  CBlastOutput
 CBlastOutput –. More...
 
class  CBlastOutput_Base
 CBlastOutput_Base –. More...
 
class  CHit
 A generalized representation of a pairwise alignment. More...
 
class  CHit_Base
 CHit_Base –. More...
 
class  CHsp
 CHsp –. More...
 
class  CHsp_Base
 CHsp_Base –. More...
 
class  CIteration
 CIteration –. More...
 
class  CIteration_Base
 CIteration_Base –. More...
 
class  CParameters
 CParameters –. More...
 
class  CParameters_Base
 CParameters_Base –. More...
 
class  CStatistics
 CStatistics –. More...
 
class  CStatistics_Base
 CStatistics_Base –. More...
 

Typedefs

typedef CBlastOutput_Base CBlastOutput::Tparent
 
typedef CSerialObject CBlastOutput_Base::Tparent
 
typedef string CBlastOutput_Base::TProgram
 
typedef string CBlastOutput_Base::TVersion
 
typedef string CBlastOutput_Base::TReference
 
typedef string CBlastOutput_Base::TDb
 
typedef string CBlastOutput_Base::TQuery_ID
 
typedef string CBlastOutput_Base::TQuery_def
 
typedef int CBlastOutput_Base::TQuery_len
 
typedef string CBlastOutput_Base::TQuery_seq
 
typedef CParameters CBlastOutput_Base::TParam
 
typedef list< CRef< CIteration > > CBlastOutput_Base::TIterations
 
typedef CStatistics CBlastOutput_Base::TMbstat
 
typedef Tparent::CMemberIndex< E_memberIndex, 12 > CBlastOutput_Base::TmemberIndex
 
typedef CHit_Base CHit::Tparent
 
typedef CSerialObject CHit_Base::Tparent
 
typedef int CHit_Base::TNum
 
typedef string CHit_Base::TId
 
typedef string CHit_Base::TDef
 
typedef string CHit_Base::TAccession
 
typedef int CHit_Base::TLen
 
typedef list< CRef< CHsp > > CHit_Base::THsps
 
typedef Tparent::CMemberIndex< E_memberIndex, 7 > CHit_Base::TmemberIndex
 
typedef CHsp_Base CHsp::Tparent
 
typedef CSerialObject CHsp_Base::Tparent
 
typedef int CHsp_Base::TNum
 
typedef double CHsp_Base::TBit_score
 
typedef double CHsp_Base::TScore
 
typedef double CHsp_Base::TEvalue
 
typedef int CHsp_Base::TQuery_from
 
typedef int CHsp_Base::TQuery_to
 
typedef int CHsp_Base::THit_from
 
typedef int CHsp_Base::THit_to
 
typedef int CHsp_Base::TPattern_from
 
typedef int CHsp_Base::TPattern_to
 
typedef int CHsp_Base::TQuery_frame
 
typedef int CHsp_Base::THit_frame
 
typedef int CHsp_Base::TIdentity
 
typedef int CHsp_Base::TPositive
 
typedef int CHsp_Base::TGaps
 
typedef int CHsp_Base::TAlign_len
 
typedef int CHsp_Base::TDensity
 
typedef string CHsp_Base::TQseq
 
typedef string CHsp_Base::THseq
 
typedef string CHsp_Base::TMidline
 
typedef Tparent::CMemberIndex< E_memberIndex, 21 > CHsp_Base::TmemberIndex
 
typedef CIteration_Base CIteration::Tparent
 
typedef CSerialObject CIteration_Base::Tparent
 
typedef int CIteration_Base::TIter_num
 
typedef string CIteration_Base::TQuery_ID
 
typedef string CIteration_Base::TQuery_def
 
typedef int CIteration_Base::TQuery_len
 
typedef list< CRef< CHit > > CIteration_Base::THits
 
typedef CStatistics CIteration_Base::TStat
 
typedef string CIteration_Base::TMessage
 
typedef Tparent::CMemberIndex< E_memberIndex, 8 > CIteration_Base::TmemberIndex
 
typedef CParameters_Base CParameters::Tparent
 
typedef CSerialObject CParameters_Base::Tparent
 
typedef string CParameters_Base::TMatrix
 
typedef double CParameters_Base::TExpect
 
typedef double CParameters_Base::TInclude
 
typedef int CParameters_Base::TSc_match
 
typedef int CParameters_Base::TSc_mismatch
 
typedef int CParameters_Base::TGap_open
 
typedef int CParameters_Base::TGap_extend
 
typedef string CParameters_Base::TFilter
 
typedef string CParameters_Base::TPattern
 
typedef string CParameters_Base::TEntrez_query
 
typedef Tparent::CMemberIndex< E_memberIndex, 11 > CParameters_Base::TmemberIndex
 
typedef CStatistics_Base CStatistics::Tparent
 
typedef CSerialObject CStatistics_Base::Tparent
 
typedef int CStatistics_Base::TDb_num
 
typedef Int8 CStatistics_Base::TDb_len
 
typedef int CStatistics_Base::THsp_len
 
typedef double CStatistics_Base::TEff_space
 
typedef double CStatistics_Base::TKappa
 
typedef double CStatistics_Base::TLambda
 
typedef double CStatistics_Base::TEntropy
 
typedef Tparent::CMemberIndex< E_memberIndex, 8 > CStatistics_Base::TmemberIndex
 

Enumerations

enum class  CBlastOutput_Base::E_memberIndex {
  CBlastOutput_Base::e__allMandatory = 0 , CBlastOutput_Base::e_program , CBlastOutput_Base::e_version , CBlastOutput_Base::e_reference ,
  CBlastOutput_Base::e_db , CBlastOutput_Base::e_query_ID , CBlastOutput_Base::e_query_def , CBlastOutput_Base::e_query_len ,
  CBlastOutput_Base::e_query_seq , CBlastOutput_Base::e_param , CBlastOutput_Base::e_iterations , CBlastOutput_Base::e_mbstat
}
 
enum class  CHit_Base::E_memberIndex {
  CHit_Base::e__allMandatory = 0 , CHit_Base::e_num , CHit_Base::e_id , CHit_Base::e_def ,
  CHit_Base::e_accession , CHit_Base::e_len , CHit_Base::e_hsps , CHit_Base::e__allMandatory = 0 ,
  CHit_Base::e_num , CHit_Base::e_description , CHit_Base::e_len , CHit_Base::e_hsps
}
 
enum class  CHsp_Base::E_memberIndex {
  CHsp_Base::e__allMandatory = 0 , CHsp_Base::e_num , CHsp_Base::e_bit_score , CHsp_Base::e_score ,
  CHsp_Base::e_evalue , CHsp_Base::e_query_from , CHsp_Base::e_query_to , CHsp_Base::e_hit_from ,
  CHsp_Base::e_hit_to , CHsp_Base::e_pattern_from , CHsp_Base::e_pattern_to , CHsp_Base::e_query_frame ,
  CHsp_Base::e_hit_frame , CHsp_Base::e_identity , CHsp_Base::e_positive , CHsp_Base::e_gaps ,
  CHsp_Base::e_align_len , CHsp_Base::e_density , CHsp_Base::e_qseq , CHsp_Base::e_hseq ,
  CHsp_Base::e_midline , CHsp_Base::e__allMandatory = 0 , CHsp_Base::e_num , CHsp_Base::e_bit_score ,
  CHsp_Base::e_score , CHsp_Base::e_evalue , CHsp_Base::e_identity , CHsp_Base::e_positive ,
  CHsp_Base::e_density , CHsp_Base::e_pattern_from , CHsp_Base::e_pattern_to , CHsp_Base::e_query_from ,
  CHsp_Base::e_query_to , CHsp_Base::e_query_strand , CHsp_Base::e_query_frame , CHsp_Base::e_hit_from ,
  CHsp_Base::e_hit_to , CHsp_Base::e_hit_strand , CHsp_Base::e_hit_frame , CHsp_Base::e_align_len ,
  CHsp_Base::e_gaps , CHsp_Base::e_qseq , CHsp_Base::e_hseq , CHsp_Base::e_midline
}
 
enum class  CIteration_Base::E_memberIndex {
  CIteration_Base::e__allMandatory = 0 , CIteration_Base::e_iter_num , CIteration_Base::e_query_ID , CIteration_Base::e_query_def ,
  CIteration_Base::e_query_len , CIteration_Base::e_hits , CIteration_Base::e_stat , CIteration_Base::e_message ,
  CIteration_Base::e__allMandatory = 0 , CIteration_Base::e_iter_num , CIteration_Base::e_search
}
 
enum class  CParameters_Base::E_memberIndex {
  CParameters_Base::e__allMandatory = 0 , CParameters_Base::e_matrix , CParameters_Base::e_expect , CParameters_Base::e_include ,
  CParameters_Base::e_sc_match , CParameters_Base::e_sc_mismatch , CParameters_Base::e_gap_open , CParameters_Base::e_gap_extend ,
  CParameters_Base::e_filter , CParameters_Base::e_pattern , CParameters_Base::e_entrez_query , CParameters_Base::e__allMandatory = 0 ,
  CParameters_Base::e_matrix , CParameters_Base::e_expect , CParameters_Base::e_include , CParameters_Base::e_sc_match ,
  CParameters_Base::e_sc_mismatch , CParameters_Base::e_gap_open , CParameters_Base::e_gap_extend , CParameters_Base::e_filter ,
  CParameters_Base::e_pattern , CParameters_Base::e_entrez_query , CParameters_Base::e_cbs , CParameters_Base::e_query_gencode ,
  CParameters_Base::e_db_gencode , CParameters_Base::e_bl2seq_mode
}
 
enum class  CStatistics_Base::E_memberIndex {
  CStatistics_Base::e__allMandatory = 0 , CStatistics_Base::e_db_num , CStatistics_Base::e_db_len , CStatistics_Base::e_hsp_len ,
  CStatistics_Base::e_eff_space , CStatistics_Base::e_kappa , CStatistics_Base::e_lambda , CStatistics_Base::e_entropy ,
  CStatistics_Base::e__allMandatory = 0 , CStatistics_Base::e_db_num , CStatistics_Base::e_db_len , CStatistics_Base::e_hsp_len ,
  CStatistics_Base::e_eff_space , CStatistics_Base::e_kappa , CStatistics_Base::e_lambda , CStatistics_Base::e_entropy
}
 

Functions

 CBlastOutput::CBlastOutput (void)
 
 CBlastOutput::~CBlastOutput (void)
 
 CBlastOutput::CBlastOutput (const CBlastOutput &value)
 
CBlastOutputCBlastOutput::operator= (const CBlastOutput &value)
 
 CBlastOutput_Base::CBlastOutput_Base (void)
 
virtual CBlastOutput_Base::~CBlastOutput_Base (void)
 
 CBlastOutput_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CBlastOutput_Base::IsSetProgram (void) const
 BLAST program: blastp, tblastx etc. More...
 
bool CBlastOutput_Base::CanGetProgram (void) const
 Check if it is safe to call GetProgram method. More...
 
void CBlastOutput_Base::ResetProgram (void)
 Reset Program data member. More...
 
const TProgramCBlastOutput_Base::GetProgram (void) const
 Get the Program member data. More...
 
void CBlastOutput_Base::SetProgram (const TProgram &value)
 Assign a value to Program data member. More...
 
void CBlastOutput_Base::SetProgram (TProgram &&value)
 
TProgramCBlastOutput_Base::SetProgram (void)
 Assign a value to Program data member. More...
 
bool CBlastOutput_Base::IsSetVersion (void) const
 Program version Check if a value has been assigned to Version data member. More...
 
bool CBlastOutput_Base::CanGetVersion (void) const
 Check if it is safe to call GetVersion method. More...
 
void CBlastOutput_Base::ResetVersion (void)
 Reset Version data member. More...
 
const TVersionCBlastOutput_Base::GetVersion (void) const
 Get the Version member data. More...
 
void CBlastOutput_Base::SetVersion (const TVersion &value)
 Assign a value to Version data member. More...
 
void CBlastOutput_Base::SetVersion (TVersion &&value)
 
TVersionCBlastOutput_Base::SetVersion (void)
 Assign a value to Version data member. More...
 
bool CBlastOutput_Base::IsSetReference (void) const
 Steven, David, Tom and others Check if a value has been assigned to Reference data member. More...
 
bool CBlastOutput_Base::CanGetReference (void) const
 Check if it is safe to call GetReference method. More...
 
void CBlastOutput_Base::ResetReference (void)
 Reset Reference data member. More...
 
const TReferenceCBlastOutput_Base::GetReference (void) const
 Get the Reference member data. More...
 
void CBlastOutput_Base::SetReference (const TReference &value)
 Assign a value to Reference data member. More...
 
void CBlastOutput_Base::SetReference (TReference &&value)
 
TReferenceCBlastOutput_Base::SetReference (void)
 Assign a value to Reference data member. More...
 
bool CBlastOutput_Base::IsSetDb (void) const
 BLAST Database name Check if a value has been assigned to Db data member. More...
 
bool CBlastOutput_Base::CanGetDb (void) const
 Check if it is safe to call GetDb method. More...
 
void CBlastOutput_Base::ResetDb (void)
 Reset Db data member. More...
 
const TDbCBlastOutput_Base::GetDb (void) const
 Get the Db member data. More...
 
void CBlastOutput_Base::SetDb (const TDb &value)
 Assign a value to Db data member. More...
 
void CBlastOutput_Base::SetDb (TDb &&value)
 
TDbCBlastOutput_Base::SetDb (void)
 Assign a value to Db data member. More...
 
bool CBlastOutput_Base::IsSetQuery_ID (void) const
 SeqId of query Check if a value has been assigned to Query_ID data member. More...
 
bool CBlastOutput_Base::CanGetQuery_ID (void) const
 Check if it is safe to call GetQuery_ID method. More...
 
void CBlastOutput_Base::ResetQuery_ID (void)
 Reset Query_ID data member. More...
 
const TQuery_IDCBlastOutput_Base::GetQuery_ID (void) const
 Get the Query_ID member data. More...
 
void CBlastOutput_Base::SetQuery_ID (const TQuery_ID &value)
 Assign a value to Query_ID data member. More...
 
void CBlastOutput_Base::SetQuery_ID (TQuery_ID &&value)
 
TQuery_IDCBlastOutput_Base::SetQuery_ID (void)
 Assign a value to Query_ID data member. More...
 
bool CBlastOutput_Base::IsSetQuery_def (void) const
 Definition line of query Check if a value has been assigned to Query_def data member. More...
 
bool CBlastOutput_Base::CanGetQuery_def (void) const
 Check if it is safe to call GetQuery_def method. More...
 
void CBlastOutput_Base::ResetQuery_def (void)
 Reset Query_def data member. More...
 
const TQuery_defCBlastOutput_Base::GetQuery_def (void) const
 Get the Query_def member data. More...
 
void CBlastOutput_Base::SetQuery_def (const TQuery_def &value)
 Assign a value to Query_def data member. More...
 
void CBlastOutput_Base::SetQuery_def (TQuery_def &&value)
 
TQuery_defCBlastOutput_Base::SetQuery_def (void)
 Assign a value to Query_def data member. More...
 
bool CBlastOutput_Base::IsSetQuery_len (void) const
 length of query sequence Check if a value has been assigned to Query_len data member. More...
 
bool CBlastOutput_Base::CanGetQuery_len (void) const
 Check if it is safe to call GetQuery_len method. More...
 
void CBlastOutput_Base::ResetQuery_len (void)
 Reset Query_len data member. More...
 
TQuery_len CBlastOutput_Base::GetQuery_len (void) const
 Get the Query_len member data. More...
 
void CBlastOutput_Base::SetQuery_len (TQuery_len value)
 Assign a value to Query_len data member. More...
 
TQuery_lenCBlastOutput_Base::SetQuery_len (void)
 Assign a value to Query_len data member. More...
 
bool CBlastOutput_Base::IsSetQuery_seq (void) const
 query sequence itself Check if a value has been assigned to Query_seq data member. More...
 
bool CBlastOutput_Base::CanGetQuery_seq (void) const
 Check if it is safe to call GetQuery_seq method. More...
 
void CBlastOutput_Base::ResetQuery_seq (void)
 Reset Query_seq data member. More...
 
const TQuery_seqCBlastOutput_Base::GetQuery_seq (void) const
 Get the Query_seq member data. More...
 
void CBlastOutput_Base::SetQuery_seq (const TQuery_seq &value)
 Assign a value to Query_seq data member. More...
 
void CBlastOutput_Base::SetQuery_seq (TQuery_seq &&value)
 
TQuery_seqCBlastOutput_Base::SetQuery_seq (void)
 Assign a value to Query_seq data member. More...
 
bool CBlastOutput_Base::IsSetParam (void) const
 search parameters Check if a value has been assigned to Param data member. More...
 
bool CBlastOutput_Base::CanGetParam (void) const
 Check if it is safe to call GetParam method. More...
 
void CBlastOutput_Base::ResetParam (void)
 Reset Param data member. More...
 
const TParamCBlastOutput_Base::GetParam (void) const
 Get the Param member data. More...
 
void CBlastOutput_Base::SetParam (TParam &value)
 Assign a value to Param data member. More...
 
TParamCBlastOutput_Base::SetParam (void)
 Assign a value to Param data member. More...
 
bool CBlastOutput_Base::IsSetIterations (void) const
 Check if a value has been assigned to Iterations data member. More...
 
bool CBlastOutput_Base::CanGetIterations (void) const
 Check if it is safe to call GetIterations method. More...
 
void CBlastOutput_Base::ResetIterations (void)
 Reset Iterations data member. More...
 
const TIterationsCBlastOutput_Base::GetIterations (void) const
 Get the Iterations member data. More...
 
TIterationsCBlastOutput_Base::SetIterations (void)
 Assign a value to Iterations data member. More...
 
bool CBlastOutput_Base::IsSetMbstat (void) const
 Mega BLAST search statistics Check if a value has been assigned to Mbstat data member. More...
 
bool CBlastOutput_Base::CanGetMbstat (void) const
 Check if it is safe to call GetMbstat method. More...
 
void CBlastOutput_Base::ResetMbstat (void)
 Reset Mbstat data member. More...
 
const TMbstatCBlastOutput_Base::GetMbstat (void) const
 Get the Mbstat member data. More...
 
void CBlastOutput_Base::SetMbstat (TMbstat &value)
 Assign a value to Mbstat data member. More...
 
TMbstatCBlastOutput_Base::SetMbstat (void)
 Assign a value to Mbstat data member. More...
 
virtual void CBlastOutput_Base::Reset (void)
 Reset the whole object. More...
 
 CBlastOutput_Base::CBlastOutput_Base (const CBlastOutput_Base &)
 
CBlastOutput_BaseCBlastOutput_Base::operator= (const CBlastOutput_Base &)
 
 CHit::CHit (void)
 
 CHit::~CHit (void)
 
 CHit::CHit (const CHit &value)
 
CHitCHit::operator= (const CHit &value)
 
 CHit_Base::CHit_Base (void)
 
virtual CHit_Base::~CHit_Base (void)
 
 CHit_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CHit_Base::IsSetNum (void) const
 hit number Check if a value has been assigned to Num data member. More...
 
bool CHit_Base::CanGetNum (void) const
 Check if it is safe to call GetNum method. More...
 
void CHit_Base::ResetNum (void)
 Reset Num data member. More...
 
TNum CHit_Base::GetNum (void) const
 Get the Num member data. More...
 
void CHit_Base::SetNum (TNum value)
 Assign a value to Num data member. More...
 
TNumCHit_Base::SetNum (void)
 Assign a value to Num data member. More...
 
bool CHit_Base::IsSetId (void) const
 SeqId of subject Check if a value has been assigned to Id data member. More...
 
bool CHit_Base::CanGetId (void) const
 Check if it is safe to call GetId method. More...
 
void CHit_Base::ResetId (void)
 Reset Id data member. More...
 
const TIdCHit_Base::GetId (void) const
 Get the Id member data. More...
 
void CHit_Base::SetId (const TId &value)
 Assign a value to Id data member. More...
 
void CHit_Base::SetId (TId &&value)
 
TIdCHit_Base::SetId (void)
 Assign a value to Id data member. More...
 
bool CHit_Base::IsSetDef (void) const
 definition line of subject Check if a value has been assigned to Def data member. More...
 
bool CHit_Base::CanGetDef (void) const
 Check if it is safe to call GetDef method. More...
 
void CHit_Base::ResetDef (void)
 Reset Def data member. More...
 
const TDefCHit_Base::GetDef (void) const
 Get the Def member data. More...
 
void CHit_Base::SetDef (const TDef &value)
 Assign a value to Def data member. More...
 
void CHit_Base::SetDef (TDef &&value)
 
TDefCHit_Base::SetDef (void)
 Assign a value to Def data member. More...
 
bool CHit_Base::IsSetAccession (void) const
 accession Check if a value has been assigned to Accession data member. More...
 
bool CHit_Base::CanGetAccession (void) const
 Check if it is safe to call GetAccession method. More...
 
void CHit_Base::ResetAccession (void)
 Reset Accession data member. More...
 
const TAccessionCHit_Base::GetAccession (void) const
 Get the Accession member data. More...
 
void CHit_Base::SetAccession (const TAccession &value)
 Assign a value to Accession data member. More...
 
void CHit_Base::SetAccession (TAccession &&value)
 
TAccessionCHit_Base::SetAccession (void)
 Assign a value to Accession data member. More...
 
bool CHit_Base::IsSetLen (void) const
 length of subject Check if a value has been assigned to Len data member. More...
 
bool CHit_Base::CanGetLen (void) const
 Check if it is safe to call GetLen method. More...
 
void CHit_Base::ResetLen (void)
 Reset Len data member. More...
 
TLen CHit_Base::GetLen (void) const
 Get the Len member data. More...
 
void CHit_Base::SetLen (TLen value)
 Assign a value to Len data member. More...
 
TLenCHit_Base::SetLen (void)
 Assign a value to Len data member. More...
 
bool CHit_Base::IsSetHsps (void) const
 all HSP regions for the given subject Check if a value has been assigned to Hsps data member. More...
 
bool CHit_Base::CanGetHsps (void) const
 Check if it is safe to call GetHsps method. More...
 
void CHit_Base::ResetHsps (void)
 Reset Hsps data member. More...
 
const THspsCHit_Base::GetHsps (void) const
 Get the Hsps member data. More...
 
THspsCHit_Base::SetHsps (void)
 Assign a value to Hsps data member. More...
 
virtual void CHit_Base::Reset (void)
 Reset the whole object. More...
 
 CHit_Base::CHit_Base (const CHit_Base &)
 
CHit_BaseCHit_Base::operator= (const CHit_Base &)
 
 CHsp::CHsp (void)
 
 CHsp::~CHsp (void)
 
 CHsp::CHsp (const CHsp &value)
 
CHspCHsp::operator= (const CHsp &value)
 
 CHsp_Base::CHsp_Base (void)
 
virtual CHsp_Base::~CHsp_Base (void)
 
 CHsp_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CHsp_Base::IsSetNum (void) const
 HSP number Check if a value has been assigned to Num data member. More...
 
bool CHsp_Base::CanGetNum (void) const
 Check if it is safe to call GetNum method. More...
 
void CHsp_Base::ResetNum (void)
 Reset Num data member. More...
 
TNum CHsp_Base::GetNum (void) const
 Get the Num member data. More...
 
void CHsp_Base::SetNum (TNum value)
 Assign a value to Num data member. More...
 
TNumCHsp_Base::SetNum (void)
 Assign a value to Num data member. More...
 
bool CHsp_Base::IsSetBit_score (void) const
 score (in bits) of HSP Check if a value has been assigned to Bit_score data member. More...
 
bool CHsp_Base::CanGetBit_score (void) const
 Check if it is safe to call GetBit_score method. More...
 
void CHsp_Base::ResetBit_score (void)
 Reset Bit_score data member. More...
 
TBit_score CHsp_Base::GetBit_score (void) const
 Get the Bit_score member data. More...
 
void CHsp_Base::SetBit_score (TBit_score value)
 Assign a value to Bit_score data member. More...
 
TBit_scoreCHsp_Base::SetBit_score (void)
 Assign a value to Bit_score data member. More...
 
bool CHsp_Base::IsSetScore (void) const
 score of HSP Check if a value has been assigned to Score data member. More...
 
bool CHsp_Base::CanGetScore (void) const
 Check if it is safe to call GetScore method. More...
 
void CHsp_Base::ResetScore (void)
 Reset Score data member. More...
 
TScore CHsp_Base::GetScore (void) const
 Get the Score member data. More...
 
void CHsp_Base::SetScore (TScore value)
 Assign a value to Score data member. More...
 
TScoreCHsp_Base::SetScore (void)
 Assign a value to Score data member. More...
 
bool CHsp_Base::IsSetEvalue (void) const
 e-value of HSP Check if a value has been assigned to Evalue data member. More...
 
bool CHsp_Base::CanGetEvalue (void) const
 Check if it is safe to call GetEvalue method. More...
 
void CHsp_Base::ResetEvalue (void)
 Reset Evalue data member. More...
 
TEvalue CHsp_Base::GetEvalue (void) const
 Get the Evalue member data. More...
 
void CHsp_Base::SetEvalue (TEvalue value)
 Assign a value to Evalue data member. More...
 
TEvalueCHsp_Base::SetEvalue (void)
 Assign a value to Evalue data member. More...
 
bool CHsp_Base::IsSetQuery_from (void) const
 start of HSP in query Check if a value has been assigned to Query_from data member. More...
 
bool CHsp_Base::CanGetQuery_from (void) const
 Check if it is safe to call GetQuery_from method. More...
 
void CHsp_Base::ResetQuery_from (void)
 Reset Query_from data member. More...
 
TQuery_from CHsp_Base::GetQuery_from (void) const
 Get the Query_from member data. More...
 
void CHsp_Base::SetQuery_from (TQuery_from value)
 Assign a value to Query_from data member. More...
 
TQuery_fromCHsp_Base::SetQuery_from (void)
 Assign a value to Query_from data member. More...
 
bool CHsp_Base::IsSetQuery_to (void) const
 end of HSP Check if a value has been assigned to Query_to data member. More...
 
bool CHsp_Base::CanGetQuery_to (void) const
 Check if it is safe to call GetQuery_to method. More...
 
void CHsp_Base::ResetQuery_to (void)
 Reset Query_to data member. More...
 
TQuery_to CHsp_Base::GetQuery_to (void) const
 Get the Query_to member data. More...
 
void CHsp_Base::SetQuery_to (TQuery_to value)
 Assign a value to Query_to data member. More...
 
TQuery_toCHsp_Base::SetQuery_to (void)
 Assign a value to Query_to data member. More...
 
bool CHsp_Base::IsSetHit_from (void) const
 start of HSP in subject Check if a value has been assigned to Hit_from data member. More...
 
bool CHsp_Base::CanGetHit_from (void) const
 Check if it is safe to call GetHit_from method. More...
 
void CHsp_Base::ResetHit_from (void)
 Reset Hit_from data member. More...
 
THit_from CHsp_Base::GetHit_from (void) const
 Get the Hit_from member data. More...
 
void CHsp_Base::SetHit_from (THit_from value)
 Assign a value to Hit_from data member. More...
 
THit_fromCHsp_Base::SetHit_from (void)
 Assign a value to Hit_from data member. More...
 
bool CHsp_Base::IsSetHit_to (void) const
 end of HSP in subject Check if a value has been assigned to Hit_to data member. More...
 
bool CHsp_Base::CanGetHit_to (void) const
 Check if it is safe to call GetHit_to method. More...
 
void CHsp_Base::ResetHit_to (void)
 Reset Hit_to data member. More...
 
THit_to CHsp_Base::GetHit_to (void) const
 Get the Hit_to member data. More...
 
void CHsp_Base::SetHit_to (THit_to value)
 Assign a value to Hit_to data member. More...
 
THit_toCHsp_Base::SetHit_to (void)
 Assign a value to Hit_to data member. More...
 
bool CHsp_Base::IsSetPattern_from (void) const
 start of PHI-BLAST pattern Check if a value has been assigned to Pattern_from data member. More...
 
bool CHsp_Base::CanGetPattern_from (void) const
 Check if it is safe to call GetPattern_from method. More...
 
void CHsp_Base::ResetPattern_from (void)
 Reset Pattern_from data member. More...
 
TPattern_from CHsp_Base::GetPattern_from (void) const
 Get the Pattern_from member data. More...
 
void CHsp_Base::SetPattern_from (TPattern_from value)
 Assign a value to Pattern_from data member. More...
 
TPattern_fromCHsp_Base::SetPattern_from (void)
 Assign a value to Pattern_from data member. More...
 
bool CHsp_Base::IsSetPattern_to (void) const
 end of PHI-BLAST pattern Check if a value has been assigned to Pattern_to data member. More...
 
bool CHsp_Base::CanGetPattern_to (void) const
 Check if it is safe to call GetPattern_to method. More...
 
void CHsp_Base::ResetPattern_to (void)
 Reset Pattern_to data member. More...
 
TPattern_to CHsp_Base::GetPattern_to (void) const
 Get the Pattern_to member data. More...
 
void CHsp_Base::SetPattern_to (TPattern_to value)
 Assign a value to Pattern_to data member. More...
 
TPattern_toCHsp_Base::SetPattern_to (void)
 Assign a value to Pattern_to data member. More...
 
bool CHsp_Base::IsSetQuery_frame (void) const
 translation frame of query Check if a value has been assigned to Query_frame data member. More...
 
bool CHsp_Base::CanGetQuery_frame (void) const
 Check if it is safe to call GetQuery_frame method. More...
 
void CHsp_Base::ResetQuery_frame (void)
 Reset Query_frame data member. More...
 
TQuery_frame CHsp_Base::GetQuery_frame (void) const
 Get the Query_frame member data. More...
 
void CHsp_Base::SetQuery_frame (TQuery_frame value)
 Assign a value to Query_frame data member. More...
 
TQuery_frameCHsp_Base::SetQuery_frame (void)
 Assign a value to Query_frame data member. More...
 
bool CHsp_Base::IsSetHit_frame (void) const
 translation frame of subject Check if a value has been assigned to Hit_frame data member. More...
 
bool CHsp_Base::CanGetHit_frame (void) const
 Check if it is safe to call GetHit_frame method. More...
 
void CHsp_Base::ResetHit_frame (void)
 Reset Hit_frame data member. More...
 
THit_frame CHsp_Base::GetHit_frame (void) const
 Get the Hit_frame member data. More...
 
void CHsp_Base::SetHit_frame (THit_frame value)
 Assign a value to Hit_frame data member. More...
 
THit_frameCHsp_Base::SetHit_frame (void)
 Assign a value to Hit_frame data member. More...
 
bool CHsp_Base::IsSetIdentity (void) const
 number of identities in HSP Check if a value has been assigned to Identity data member. More...
 
bool CHsp_Base::CanGetIdentity (void) const
 Check if it is safe to call GetIdentity method. More...
 
void CHsp_Base::ResetIdentity (void)
 Reset Identity data member. More...
 
TIdentity CHsp_Base::GetIdentity (void) const
 Get the Identity member data. More...
 
void CHsp_Base::SetIdentity (TIdentity value)
 Assign a value to Identity data member. More...
 
TIdentityCHsp_Base::SetIdentity (void)
 Assign a value to Identity data member. More...
 
bool CHsp_Base::IsSetPositive (void) const
 number of positives in HSP Check if a value has been assigned to Positive data member. More...
 
bool CHsp_Base::CanGetPositive (void) const
 Check if it is safe to call GetPositive method. More...
 
void CHsp_Base::ResetPositive (void)
 Reset Positive data member. More...
 
TPositive CHsp_Base::GetPositive (void) const
 Get the Positive member data. More...
 
void CHsp_Base::SetPositive (TPositive value)
 Assign a value to Positive data member. More...
 
TPositiveCHsp_Base::SetPositive (void)
 Assign a value to Positive data member. More...
 
bool CHsp_Base::IsSetGaps (void) const
 number of gaps in HSP Check if a value has been assigned to Gaps data member. More...
 
bool CHsp_Base::CanGetGaps (void) const
 Check if it is safe to call GetGaps method. More...
 
void CHsp_Base::ResetGaps (void)
 Reset Gaps data member. More...
 
TGaps CHsp_Base::GetGaps (void) const
 Get the Gaps member data. More...
 
void CHsp_Base::SetGaps (TGaps value)
 Assign a value to Gaps data member. More...
 
TGapsCHsp_Base::SetGaps (void)
 Assign a value to Gaps data member. More...
 
bool CHsp_Base::IsSetAlign_len (void) const
 length of the alignment used Check if a value has been assigned to Align_len data member. More...
 
bool CHsp_Base::CanGetAlign_len (void) const
 Check if it is safe to call GetAlign_len method. More...
 
void CHsp_Base::ResetAlign_len (void)
 Reset Align_len data member. More...
 
TAlign_len CHsp_Base::GetAlign_len (void) const
 Get the Align_len member data. More...
 
void CHsp_Base::SetAlign_len (TAlign_len value)
 Assign a value to Align_len data member. More...
 
TAlign_lenCHsp_Base::SetAlign_len (void)
 Assign a value to Align_len data member. More...
 
bool CHsp_Base::IsSetDensity (void) const
 score density Check if a value has been assigned to Density data member. More...
 
bool CHsp_Base::CanGetDensity (void) const
 Check if it is safe to call GetDensity method. More...
 
void CHsp_Base::ResetDensity (void)
 Reset Density data member. More...
 
TDensity CHsp_Base::GetDensity (void) const
 Get the Density member data. More...
 
void CHsp_Base::SetDensity (TDensity value)
 Assign a value to Density data member. More...
 
TDensityCHsp_Base::SetDensity (void)
 Assign a value to Density data member. More...
 
bool CHsp_Base::IsSetQseq (void) const
 alignment string for the query (with gaps) Check if a value has been assigned to Qseq data member. More...
 
bool CHsp_Base::CanGetQseq (void) const
 Check if it is safe to call GetQseq method. More...
 
void CHsp_Base::ResetQseq (void)
 Reset Qseq data member. More...
 
const TQseqCHsp_Base::GetQseq (void) const
 Get the Qseq member data. More...
 
void CHsp_Base::SetQseq (const TQseq &value)
 Assign a value to Qseq data member. More...
 
void CHsp_Base::SetQseq (TQseq &&value)
 
TQseqCHsp_Base::SetQseq (void)
 Assign a value to Qseq data member. More...
 
bool CHsp_Base::IsSetHseq (void) const
 alignment string for subject (with gaps) Check if a value has been assigned to Hseq data member. More...
 
bool CHsp_Base::CanGetHseq (void) const
 Check if it is safe to call GetHseq method. More...
 
void CHsp_Base::ResetHseq (void)
 Reset Hseq data member. More...
 
const THseqCHsp_Base::GetHseq (void) const
 Get the Hseq member data. More...
 
void CHsp_Base::SetHseq (const THseq &value)
 Assign a value to Hseq data member. More...
 
void CHsp_Base::SetHseq (THseq &&value)
 
THseqCHsp_Base::SetHseq (void)
 Assign a value to Hseq data member. More...
 
bool CHsp_Base::IsSetMidline (void) const
 formating middle line Check if a value has been assigned to Midline data member. More...
 
bool CHsp_Base::CanGetMidline (void) const
 Check if it is safe to call GetMidline method. More...
 
void CHsp_Base::ResetMidline (void)
 Reset Midline data member. More...
 
const TMidlineCHsp_Base::GetMidline (void) const
 Get the Midline member data. More...
 
void CHsp_Base::SetMidline (const TMidline &value)
 Assign a value to Midline data member. More...
 
void CHsp_Base::SetMidline (TMidline &&value)
 
TMidlineCHsp_Base::SetMidline (void)
 Assign a value to Midline data member. More...
 
virtual void CHsp_Base::Reset (void)
 Reset the whole object. More...
 
 CHsp_Base::CHsp_Base (const CHsp_Base &)
 
CHsp_BaseCHsp_Base::operator= (const CHsp_Base &)
 
 CIteration::CIteration (void)
 
 CIteration::~CIteration (void)
 
 CIteration::CIteration (const CIteration &value)
 
CIterationCIteration::operator= (const CIteration &value)
 
 CIteration_Base::CIteration_Base (void)
 
virtual CIteration_Base::~CIteration_Base (void)
 
 CIteration_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CIteration_Base::IsSetIter_num (void) const
 iteration number Check if a value has been assigned to Iter_num data member. More...
 
bool CIteration_Base::CanGetIter_num (void) const
 Check if it is safe to call GetIter_num method. More...
 
void CIteration_Base::ResetIter_num (void)
 Reset Iter_num data member. More...
 
TIter_num CIteration_Base::GetIter_num (void) const
 Get the Iter_num member data. More...
 
void CIteration_Base::SetIter_num (TIter_num value)
 Assign a value to Iter_num data member. More...
 
TIter_numCIteration_Base::SetIter_num (void)
 Assign a value to Iter_num data member. More...
 
bool CIteration_Base::IsSetQuery_ID (void) const
 SeqId of query Check if a value has been assigned to Query_ID data member. More...
 
bool CIteration_Base::CanGetQuery_ID (void) const
 Check if it is safe to call GetQuery_ID method. More...
 
void CIteration_Base::ResetQuery_ID (void)
 Reset Query_ID data member. More...
 
const TQuery_IDCIteration_Base::GetQuery_ID (void) const
 Get the Query_ID member data. More...
 
void CIteration_Base::SetQuery_ID (const TQuery_ID &value)
 Assign a value to Query_ID data member. More...
 
void CIteration_Base::SetQuery_ID (TQuery_ID &&value)
 
TQuery_IDCIteration_Base::SetQuery_ID (void)
 Assign a value to Query_ID data member. More...
 
bool CIteration_Base::IsSetQuery_def (void) const
 Definition line of query Check if a value has been assigned to Query_def data member. More...
 
bool CIteration_Base::CanGetQuery_def (void) const
 Check if it is safe to call GetQuery_def method. More...
 
void CIteration_Base::ResetQuery_def (void)
 Reset Query_def data member. More...
 
const TQuery_defCIteration_Base::GetQuery_def (void) const
 Get the Query_def member data. More...
 
void CIteration_Base::SetQuery_def (const TQuery_def &value)
 Assign a value to Query_def data member. More...
 
void CIteration_Base::SetQuery_def (TQuery_def &&value)
 
TQuery_defCIteration_Base::SetQuery_def (void)
 Assign a value to Query_def data member. More...
 
bool CIteration_Base::IsSetQuery_len (void) const
 length of query sequence Check if a value has been assigned to Query_len data member. More...
 
bool CIteration_Base::CanGetQuery_len (void) const
 Check if it is safe to call GetQuery_len method. More...
 
void CIteration_Base::ResetQuery_len (void)
 Reset Query_len data member. More...
 
TQuery_len CIteration_Base::GetQuery_len (void) const
 Get the Query_len member data. More...
 
void CIteration_Base::SetQuery_len (TQuery_len value)
 Assign a value to Query_len data member. More...
 
TQuery_lenCIteration_Base::SetQuery_len (void)
 Assign a value to Query_len data member. More...
 
bool CIteration_Base::IsSetHits (void) const
 Hits one for every db sequence Check if a value has been assigned to Hits data member. More...
 
bool CIteration_Base::CanGetHits (void) const
 Check if it is safe to call GetHits method. More...
 
void CIteration_Base::ResetHits (void)
 Reset Hits data member. More...
 
const THitsCIteration_Base::GetHits (void) const
 Get the Hits member data. More...
 
THitsCIteration_Base::SetHits (void)
 Assign a value to Hits data member. More...
 
bool CIteration_Base::IsSetStat (void) const
 search statistics Check if a value has been assigned to Stat data member. More...
 
bool CIteration_Base::CanGetStat (void) const
 Check if it is safe to call GetStat method. More...
 
void CIteration_Base::ResetStat (void)
 Reset Stat data member. More...
 
const TStatCIteration_Base::GetStat (void) const
 Get the Stat member data. More...
 
void CIteration_Base::SetStat (TStat &value)
 Assign a value to Stat data member. More...
 
TStatCIteration_Base::SetStat (void)
 Assign a value to Stat data member. More...
 
bool CIteration_Base::IsSetMessage (void) const
 Some (error?) information Check if a value has been assigned to Message data member. More...
 
bool CIteration_Base::CanGetMessage (void) const
 Check if it is safe to call GetMessage method. More...
 
void CIteration_Base::ResetMessage (void)
 Reset Message data member. More...
 
const TMessageCIteration_Base::GetMessage (void) const
 Get the Message member data. More...
 
void CIteration_Base::SetMessage (const TMessage &value)
 Assign a value to Message data member. More...
 
void CIteration_Base::SetMessage (TMessage &&value)
 
TMessageCIteration_Base::SetMessage (void)
 Assign a value to Message data member. More...
 
virtual void CIteration_Base::Reset (void)
 Reset the whole object. More...
 
 CIteration_Base::CIteration_Base (const CIteration_Base &)
 
CIteration_BaseCIteration_Base::operator= (const CIteration_Base &)
 
 CParameters::CParameters (void)
 
 CParameters::~CParameters (void)
 
 CParameters::CParameters (const CParameters &value)
 
CParametersCParameters::operator= (const CParameters &value)
 
 CParameters_Base::CParameters_Base (void)
 
virtual CParameters_Base::~CParameters_Base (void)
 
 CParameters_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CParameters_Base::IsSetMatrix (void) const
 Matrix used (-M) Check if a value has been assigned to Matrix data member. More...
 
bool CParameters_Base::CanGetMatrix (void) const
 Check if it is safe to call GetMatrix method. More...
 
void CParameters_Base::ResetMatrix (void)
 Reset Matrix data member. More...
 
const TMatrixCParameters_Base::GetMatrix (void) const
 Get the Matrix member data. More...
 
void CParameters_Base::SetMatrix (const TMatrix &value)
 Assign a value to Matrix data member. More...
 
void CParameters_Base::SetMatrix (TMatrix &&value)
 
TMatrixCParameters_Base::SetMatrix (void)
 Assign a value to Matrix data member. More...
 
bool CParameters_Base::IsSetExpect (void) const
 Expectation threshold (-e) Check if a value has been assigned to Expect data member. More...
 
bool CParameters_Base::CanGetExpect (void) const
 Check if it is safe to call GetExpect method. More...
 
void CParameters_Base::ResetExpect (void)
 Reset Expect data member. More...
 
TExpect CParameters_Base::GetExpect (void) const
 Get the Expect member data. More...
 
void CParameters_Base::SetExpect (TExpect value)
 Assign a value to Expect data member. More...
 
TExpectCParameters_Base::SetExpect (void)
 Assign a value to Expect data member. More...
 
bool CParameters_Base::IsSetInclude (void) const
 Inclusion threshold (-h) Check if a value has been assigned to Include data member. More...
 
bool CParameters_Base::CanGetInclude (void) const
 Check if it is safe to call GetInclude method. More...
 
void CParameters_Base::ResetInclude (void)
 Reset Include data member. More...
 
TInclude CParameters_Base::GetInclude (void) const
 Get the Include member data. More...
 
void CParameters_Base::SetInclude (TInclude value)
 Assign a value to Include data member. More...
 
TIncludeCParameters_Base::SetInclude (void)
 Assign a value to Include data member. More...
 
bool CParameters_Base::IsSetSc_match (void) const
 match score for NT (-r) Check if a value has been assigned to Sc_match data member. More...
 
bool CParameters_Base::CanGetSc_match (void) const
 Check if it is safe to call GetSc_match method. More...
 
void CParameters_Base::ResetSc_match (void)
 Reset Sc_match data member. More...
 
TSc_match CParameters_Base::GetSc_match (void) const
 Get the Sc_match member data. More...
 
void CParameters_Base::SetSc_match (TSc_match value)
 Assign a value to Sc_match data member. More...
 
TSc_matchCParameters_Base::SetSc_match (void)
 Assign a value to Sc_match data member. More...
 
bool CParameters_Base::IsSetSc_mismatch (void) const
 mismatch score for NT (-q) Check if a value has been assigned to Sc_mismatch data member. More...
 
bool CParameters_Base::CanGetSc_mismatch (void) const
 Check if it is safe to call GetSc_mismatch method. More...
 
void CParameters_Base::ResetSc_mismatch (void)
 Reset Sc_mismatch data member. More...
 
TSc_mismatch CParameters_Base::GetSc_mismatch (void) const
 Get the Sc_mismatch member data. More...
 
void CParameters_Base::SetSc_mismatch (TSc_mismatch value)
 Assign a value to Sc_mismatch data member. More...
 
TSc_mismatchCParameters_Base::SetSc_mismatch (void)
 Assign a value to Sc_mismatch data member. More...
 
bool CParameters_Base::IsSetGap_open (void) const
 Gap opening cost (-G) Check if a value has been assigned to Gap_open data member. More...
 
bool CParameters_Base::CanGetGap_open (void) const
 Check if it is safe to call GetGap_open method. More...
 
void CParameters_Base::ResetGap_open (void)
 Reset Gap_open data member. More...
 
TGap_open CParameters_Base::GetGap_open (void) const
 Get the Gap_open member data. More...
 
void CParameters_Base::SetGap_open (TGap_open value)
 Assign a value to Gap_open data member. More...
 
TGap_openCParameters_Base::SetGap_open (void)
 Assign a value to Gap_open data member. More...
 
bool CParameters_Base::IsSetGap_extend (void) const
 Gap extension cost (-E) Check if a value has been assigned to Gap_extend data member. More...
 
bool CParameters_Base::CanGetGap_extend (void) const
 Check if it is safe to call GetGap_extend method. More...
 
void CParameters_Base::ResetGap_extend (void)
 Reset Gap_extend data member. More...
 
TGap_extend CParameters_Base::GetGap_extend (void) const
 Get the Gap_extend member data. More...
 
void CParameters_Base::SetGap_extend (TGap_extend value)
 Assign a value to Gap_extend data member. More...
 
TGap_extendCParameters_Base::SetGap_extend (void)
 Assign a value to Gap_extend data member. More...
 
bool CParameters_Base::IsSetFilter (void) const
 Filtering options (-F) Check if a value has been assigned to Filter data member. More...
 
bool CParameters_Base::CanGetFilter (void) const
 Check if it is safe to call GetFilter method. More...
 
void CParameters_Base::ResetFilter (void)
 Reset Filter data member. More...
 
const TFilterCParameters_Base::GetFilter (void) const
 Get the Filter member data. More...
 
void CParameters_Base::SetFilter (const TFilter &value)
 Assign a value to Filter data member. More...
 
void CParameters_Base::SetFilter (TFilter &&value)
 
TFilterCParameters_Base::SetFilter (void)
 Assign a value to Filter data member. More...
 
bool CParameters_Base::IsSetPattern (void) const
 PHI-BLAST pattern Check if a value has been assigned to Pattern data member. More...
 
bool CParameters_Base::CanGetPattern (void) const
 Check if it is safe to call GetPattern method. More...
 
void CParameters_Base::ResetPattern (void)
 Reset Pattern data member. More...
 
const TPatternCParameters_Base::GetPattern (void) const
 Get the Pattern member data. More...
 
void CParameters_Base::SetPattern (const TPattern &value)
 Assign a value to Pattern data member. More...
 
void CParameters_Base::SetPattern (TPattern &&value)
 
TPatternCParameters_Base::SetPattern (void)
 Assign a value to Pattern data member. More...
 
bool CParameters_Base::IsSetEntrez_query (void) const
 Limit of request to Entrez query Check if a value has been assigned to Entrez_query data member. More...
 
bool CParameters_Base::CanGetEntrez_query (void) const
 Check if it is safe to call GetEntrez_query method. More...
 
void CParameters_Base::ResetEntrez_query (void)
 Reset Entrez_query data member. More...
 
const TEntrez_queryCParameters_Base::GetEntrez_query (void) const
 Get the Entrez_query member data. More...
 
void CParameters_Base::SetEntrez_query (const TEntrez_query &value)
 Assign a value to Entrez_query data member. More...
 
void CParameters_Base::SetEntrez_query (TEntrez_query &&value)
 
TEntrez_queryCParameters_Base::SetEntrez_query (void)
 Assign a value to Entrez_query data member. More...
 
virtual void CParameters_Base::Reset (void)
 Reset the whole object. More...
 
 CParameters_Base::CParameters_Base (const CParameters_Base &)
 
CParameters_BaseCParameters_Base::operator= (const CParameters_Base &)
 
 CStatistics::CStatistics (void)
 
 CStatistics::~CStatistics (void)
 
 CStatistics::CStatistics (const CStatistics &value)
 
CStatisticsCStatistics::operator= (const CStatistics &value)
 
 CStatistics_Base::CStatistics_Base (void)
 
virtual CStatistics_Base::~CStatistics_Base (void)
 
 CStatistics_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CStatistics_Base::IsSetDb_num (void) const
 Number of sequences in BLAST db Check if a value has been assigned to Db_num data member. More...
 
bool CStatistics_Base::CanGetDb_num (void) const
 Check if it is safe to call GetDb_num method. More...
 
void CStatistics_Base::ResetDb_num (void)
 Reset Db_num data member. More...
 
TDb_num CStatistics_Base::GetDb_num (void) const
 Get the Db_num member data. More...
 
void CStatistics_Base::SetDb_num (TDb_num value)
 Assign a value to Db_num data member. More...
 
TDb_numCStatistics_Base::SetDb_num (void)
 Assign a value to Db_num data member. More...
 
bool CStatistics_Base::IsSetDb_len (void) const
 Length of BLAST db Check if a value has been assigned to Db_len data member. More...
 
bool CStatistics_Base::CanGetDb_len (void) const
 Check if it is safe to call GetDb_len method. More...
 
void CStatistics_Base::ResetDb_len (void)
 Reset Db_len data member. More...
 
TDb_len CStatistics_Base::GetDb_len (void) const
 Get the Db_len member data. More...
 
void CStatistics_Base::SetDb_len (TDb_len value)
 Assign a value to Db_len data member. More...
 
TDb_lenCStatistics_Base::SetDb_len (void)
 Assign a value to Db_len data member. More...
 
bool CStatistics_Base::IsSetHsp_len (void) const
 Effective HSP length Check if a value has been assigned to Hsp_len data member. More...
 
bool CStatistics_Base::CanGetHsp_len (void) const
 Check if it is safe to call GetHsp_len method. More...
 
void CStatistics_Base::ResetHsp_len (void)
 Reset Hsp_len data member. More...
 
THsp_len CStatistics_Base::GetHsp_len (void) const
 Get the Hsp_len member data. More...
 
void CStatistics_Base::SetHsp_len (THsp_len value)
 Assign a value to Hsp_len data member. More...
 
THsp_lenCStatistics_Base::SetHsp_len (void)
 Assign a value to Hsp_len data member. More...
 
bool CStatistics_Base::IsSetEff_space (void) const
 Effective search space Check if a value has been assigned to Eff_space data member. More...
 
bool CStatistics_Base::CanGetEff_space (void) const
 Check if it is safe to call GetEff_space method. More...
 
void CStatistics_Base::ResetEff_space (void)
 Reset Eff_space data member. More...
 
TEff_space CStatistics_Base::GetEff_space (void) const
 Get the Eff_space member data. More...
 
void CStatistics_Base::SetEff_space (TEff_space value)
 Assign a value to Eff_space data member. More...
 
TEff_spaceCStatistics_Base::SetEff_space (void)
 Assign a value to Eff_space data member. More...
 
bool CStatistics_Base::IsSetKappa (void) const
 Karlin-Altschul parameter K Check if a value has been assigned to Kappa data member. More...
 
bool CStatistics_Base::CanGetKappa (void) const
 Check if it is safe to call GetKappa method. More...
 
void CStatistics_Base::ResetKappa (void)
 Reset Kappa data member. More...
 
TKappa CStatistics_Base::GetKappa (void) const
 Get the Kappa member data. More...
 
void CStatistics_Base::SetKappa (TKappa value)
 Assign a value to Kappa data member. More...
 
TKappaCStatistics_Base::SetKappa (void)
 Assign a value to Kappa data member. More...
 
bool CStatistics_Base::IsSetLambda (void) const
 Karlin-Altschul parameter Lambda Check if a value has been assigned to Lambda data member. More...
 
bool CStatistics_Base::CanGetLambda (void) const
 Check if it is safe to call GetLambda method. More...
 
void CStatistics_Base::ResetLambda (void)
 Reset Lambda data member. More...
 
TLambda CStatistics_Base::GetLambda (void) const
 Get the Lambda member data. More...
 
void CStatistics_Base::SetLambda (TLambda value)
 Assign a value to Lambda data member. More...
 
TLambdaCStatistics_Base::SetLambda (void)
 Assign a value to Lambda data member. More...
 
bool CStatistics_Base::IsSetEntropy (void) const
 Karlin-Altschul parameter H Check if a value has been assigned to Entropy data member. More...
 
bool CStatistics_Base::CanGetEntropy (void) const
 Check if it is safe to call GetEntropy method. More...
 
void CStatistics_Base::ResetEntropy (void)
 Reset Entropy data member. More...
 
TEntropy CStatistics_Base::GetEntropy (void) const
 Get the Entropy member data. More...
 
void CStatistics_Base::SetEntropy (TEntropy value)
 Assign a value to Entropy data member. More...
 
TEntropyCStatistics_Base::SetEntropy (void)
 Assign a value to Entropy data member. More...
 
virtual void CStatistics_Base::Reset (void)
 Reset the whole object. More...
 
 CStatistics_Base::CStatistics_Base (const CStatistics_Base &)
 
CStatistics_BaseCStatistics_Base::operator= (const CStatistics_Base &)
 

Variables

Uint4 CBlastOutput_Base::m_set_State [1]
 
string CBlastOutput_Base::m_Program
 
string CBlastOutput_Base::m_Version
 
string CBlastOutput_Base::m_Reference
 
string CBlastOutput_Base::m_Db
 
string CBlastOutput_Base::m_Query_ID
 
string CBlastOutput_Base::m_Query_def
 
int CBlastOutput_Base::m_Query_len
 
string CBlastOutput_Base::m_Query_seq
 
CRef< TParamCBlastOutput_Base::m_Param
 
list< CRef< CIteration > > CBlastOutput_Base::m_Iterations
 
CRef< TMbstatCBlastOutput_Base::m_Mbstat
 
Uint4 CHit_Base::m_set_State [1]
 
int CHit_Base::m_Num
 
string CHit_Base::m_Id
 
string CHit_Base::m_Def
 
string CHit_Base::m_Accession
 
int CHit_Base::m_Len
 
list< CRef< CHsp > > CHit_Base::m_Hsps
 
Uint4 CHsp_Base::m_set_State [2]
 
int CHsp_Base::m_Num
 
double CHsp_Base::m_Bit_score
 
double CHsp_Base::m_Score
 
double CHsp_Base::m_Evalue
 
int CHsp_Base::m_Query_from
 
int CHsp_Base::m_Query_to
 
int CHsp_Base::m_Hit_from
 
int CHsp_Base::m_Hit_to
 
int CHsp_Base::m_Pattern_from
 
int CHsp_Base::m_Pattern_to
 
int CHsp_Base::m_Query_frame
 
int CHsp_Base::m_Hit_frame
 
int CHsp_Base::m_Identity
 
int CHsp_Base::m_Positive
 
int CHsp_Base::m_Gaps
 
int CHsp_Base::m_Align_len
 
int CHsp_Base::m_Density
 
string CHsp_Base::m_Qseq
 
string CHsp_Base::m_Hseq
 
string CHsp_Base::m_Midline
 
Uint4 CIteration_Base::m_set_State [1]
 
int CIteration_Base::m_Iter_num
 
string CIteration_Base::m_Query_ID
 
string CIteration_Base::m_Query_def
 
int CIteration_Base::m_Query_len
 
list< CRef< CHit > > CIteration_Base::m_Hits
 
CRef< TStatCIteration_Base::m_Stat
 
string CIteration_Base::m_Message
 
Uint4 CParameters_Base::m_set_State [1]
 
string CParameters_Base::m_Matrix
 
double CParameters_Base::m_Expect
 
double CParameters_Base::m_Include
 
int CParameters_Base::m_Sc_match
 
int CParameters_Base::m_Sc_mismatch
 
int CParameters_Base::m_Gap_open
 
int CParameters_Base::m_Gap_extend
 
string CParameters_Base::m_Filter
 
string CParameters_Base::m_Pattern
 
string CParameters_Base::m_Entrez_query
 
Uint4 CStatistics_Base::m_set_State [1]
 
int CStatistics_Base::m_Db_num
 
Int8 CStatistics_Base::m_Db_len
 
int CStatistics_Base::m_Hsp_len
 
double CStatistics_Base::m_Eff_space
 
double CStatistics_Base::m_Kappa
 
double CStatistics_Base::m_Lambda
 
double CStatistics_Base::m_Entropy
 

Detailed Description

Typedef Documentation

◆ TAccession

Definition at line 93 of file Hit_.hpp.

◆ TAlign_len

Definition at line 100 of file Hsp_.hpp.

◆ TBit_score

typedef double CHsp_Base::TBit_score

Definition at line 86 of file Hsp_.hpp.

◆ TDb

Definition at line 95 of file BlastOutput_.hpp.

◆ TDb_len

Definition at line 82 of file Statistics_.hpp.

◆ TDb_num

Definition at line 81 of file Statistics_.hpp.

◆ TDef

Definition at line 92 of file Hit_.hpp.

◆ TDensity

Definition at line 101 of file Hsp_.hpp.

◆ TEff_space

Definition at line 84 of file Statistics_.hpp.

◆ TEntrez_query

Definition at line 94 of file Parameters_.hpp.

◆ TEntropy

Definition at line 87 of file Statistics_.hpp.

◆ TEvalue

typedef double CHsp_Base::TEvalue

Definition at line 88 of file Hsp_.hpp.

◆ TExpect

typedef double CParameters_Base::TExpect

Definition at line 86 of file Parameters_.hpp.

◆ TFilter

Definition at line 92 of file Parameters_.hpp.

◆ TGap_extend

Definition at line 91 of file Parameters_.hpp.

◆ TGap_open

Definition at line 90 of file Parameters_.hpp.

◆ TGaps

Definition at line 99 of file Hsp_.hpp.

◆ THit_frame

Definition at line 96 of file Hsp_.hpp.

◆ THit_from

Definition at line 91 of file Hsp_.hpp.

◆ THit_to

Definition at line 92 of file Hsp_.hpp.

◆ THits

typedef list< CRef< CHit > > CIteration_Base::THits

Definition at line 95 of file Iteration_.hpp.

◆ THseq

Definition at line 103 of file Hsp_.hpp.

◆ THsp_len

Definition at line 83 of file Statistics_.hpp.

◆ THsps

typedef list< CRef< CHsp > > CHit_Base::THsps

Definition at line 95 of file Hit_.hpp.

◆ TId

Definition at line 91 of file Hit_.hpp.

◆ TIdentity

Definition at line 97 of file Hsp_.hpp.

◆ TInclude

Definition at line 87 of file Parameters_.hpp.

◆ TIter_num

Definition at line 91 of file Iteration_.hpp.

◆ TIterations

Definition at line 101 of file BlastOutput_.hpp.

◆ TKappa

typedef double CStatistics_Base::TKappa

Definition at line 85 of file Statistics_.hpp.

◆ TLambda

typedef double CStatistics_Base::TLambda

Definition at line 86 of file Statistics_.hpp.

◆ TLen

Definition at line 94 of file Hit_.hpp.

◆ TMatrix

Definition at line 85 of file Parameters_.hpp.

◆ TMbstat

Definition at line 102 of file BlastOutput_.hpp.

◆ TmemberIndex [1/6]

Definition at line 119 of file BlastOutput_.hpp.

◆ TmemberIndex [2/6]

Definition at line 107 of file Hit_.hpp.

◆ TmemberIndex [3/6]

Definition at line 130 of file Hsp_.hpp.

◆ TmemberIndex [4/6]

Definition at line 110 of file Iteration_.hpp.

◆ TmemberIndex [5/6]

Definition at line 110 of file Parameters_.hpp.

◆ TmemberIndex [6/6]

Definition at line 100 of file Statistics_.hpp.

◆ TMessage

Definition at line 97 of file Iteration_.hpp.

◆ TMidline

Definition at line 104 of file Hsp_.hpp.

◆ TNum [1/2]

Definition at line 90 of file Hit_.hpp.

◆ TNum [2/2]

Definition at line 85 of file Hsp_.hpp.

◆ TParam

Definition at line 100 of file BlastOutput_.hpp.

◆ Tparent [1/12]

Definition at line 67 of file BlastOutput.hpp.

◆ Tparent [2/12]

Definition at line 81 of file BlastOutput_.hpp.

◆ Tparent [3/12]

typedef CHit_Base CHit::Tparent
private

Definition at line 67 of file Hit.hpp.

◆ Tparent [4/12]

Definition at line 79 of file Hit_.hpp.

◆ Tparent [5/12]

typedef CHsp_Base CHsp::Tparent
private

Definition at line 67 of file Hsp.hpp.

◆ Tparent [6/12]

Definition at line 74 of file Hsp_.hpp.

◆ Tparent [7/12]

Definition at line 67 of file Iteration.hpp.

◆ Tparent [8/12]

Definition at line 80 of file Iteration_.hpp.

◆ Tparent [9/12]

Definition at line 67 of file Parameters.hpp.

◆ Tparent [10/12]

Definition at line 74 of file Parameters_.hpp.

◆ Tparent [11/12]

Definition at line 67 of file Statistics.hpp.

◆ Tparent [12/12]

Definition at line 70 of file Statistics_.hpp.

◆ TPattern

Definition at line 93 of file Parameters_.hpp.

◆ TPattern_from

Definition at line 93 of file Hsp_.hpp.

◆ TPattern_to

Definition at line 94 of file Hsp_.hpp.

◆ TPositive

Definition at line 98 of file Hsp_.hpp.

◆ TProgram

Definition at line 92 of file BlastOutput_.hpp.

◆ TQseq

Definition at line 102 of file Hsp_.hpp.

◆ TQuery_def [1/2]

Definition at line 97 of file BlastOutput_.hpp.

◆ TQuery_def [2/2]

Definition at line 93 of file Iteration_.hpp.

◆ TQuery_frame

Definition at line 95 of file Hsp_.hpp.

◆ TQuery_from

Definition at line 89 of file Hsp_.hpp.

◆ TQuery_ID [1/2]

Definition at line 96 of file BlastOutput_.hpp.

◆ TQuery_ID [2/2]

Definition at line 92 of file Iteration_.hpp.

◆ TQuery_len [1/2]

Definition at line 98 of file BlastOutput_.hpp.

◆ TQuery_len [2/2]

Definition at line 94 of file Iteration_.hpp.

◆ TQuery_seq

Definition at line 99 of file BlastOutput_.hpp.

◆ TQuery_to

Definition at line 90 of file Hsp_.hpp.

◆ TReference

Definition at line 94 of file BlastOutput_.hpp.

◆ TSc_match

Definition at line 88 of file Parameters_.hpp.

◆ TSc_mismatch

Definition at line 89 of file Parameters_.hpp.

◆ TScore

typedef double CHsp_Base::TScore

Definition at line 87 of file Hsp_.hpp.

◆ TStat

Definition at line 96 of file Iteration_.hpp.

◆ TVersion

Definition at line 93 of file BlastOutput_.hpp.

Enumeration Type Documentation

◆ E_memberIndex [1/6]

Enumerator
e__allMandatory 
e_program 
e_version 
e_reference 
e_db 
e_query_ID 
e_query_def 
e_query_len 
e_query_seq 
e_param 
e_iterations 
e_mbstat 

Definition at line 105 of file BlastOutput_.hpp.

◆ E_memberIndex [2/6]

Enumerator
e__allMandatory 
e_num 
e_id 
e_def 
e_accession 
e_len 
e_hsps 
e__allMandatory 
e_num 
e_description 
e_len 
e_hsps 

Definition at line 98 of file Hit_.hpp.

◆ E_memberIndex [3/6]

Enumerator
e__allMandatory 
e_num 
e_bit_score 
e_score 
e_evalue 
e_query_from 
e_query_to 
e_hit_from 
e_hit_to 
e_pattern_from 
e_pattern_to 
e_query_frame 
e_hit_frame 
e_identity 
e_positive 
e_gaps 
e_align_len 
e_density 
e_qseq 
e_hseq 
e_midline 
e__allMandatory 
e_num 
e_bit_score 
e_score 
e_evalue 
e_identity 
e_positive 
e_density 
e_pattern_from 
e_pattern_to 
e_query_from 
e_query_to 
e_query_strand 
e_query_frame 
e_hit_from 
e_hit_to 
e_hit_strand 
e_hit_frame 
e_align_len 
e_gaps 
e_qseq 
e_hseq 
e_midline 

Definition at line 107 of file Hsp_.hpp.

◆ E_memberIndex [4/6]

Enumerator
e__allMandatory 
e_iter_num 
e_query_ID 
e_query_def 
e_query_len 
e_hits 
e_stat 
e_message 
e__allMandatory 
e_iter_num 
e_search 

Definition at line 100 of file Iteration_.hpp.

◆ E_memberIndex [5/6]

Enumerator
e__allMandatory 
e_matrix 
e_expect 
e_include 
e_sc_match 
e_sc_mismatch 
e_gap_open 
e_gap_extend 
e_filter 
e_pattern 
e_entrez_query 
e__allMandatory 
e_matrix 
e_expect 
e_include 
e_sc_match 
e_sc_mismatch 
e_gap_open 
e_gap_extend 
e_filter 
e_pattern 
e_entrez_query 
e_cbs 
e_query_gencode 
e_db_gencode 
e_bl2seq_mode 

Definition at line 97 of file Parameters_.hpp.

◆ E_memberIndex [6/6]

Enumerator
e__allMandatory 
e_db_num 
e_db_len 
e_hsp_len 
e_eff_space 
e_kappa 
e_lambda 
e_entropy 
e__allMandatory 
e_db_num 
e_db_len 
e_hsp_len 
e_eff_space 
e_kappa 
e_lambda 
e_entropy 

Definition at line 90 of file Statistics_.hpp.

Function Documentation

◆ CanGetAccession()

bool CHit_Base::CanGetAccession ( void  ) const
inline

Check if it is safe to call GetAccession method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 513 of file Hit_.hpp.

References CHit_Base::IsSetAccession().

Referenced by CHit_Base::GetAccession().

◆ CanGetAlign_len()

bool CHsp_Base::CanGetAlign_len ( void  ) const
inline

Check if it is safe to call GetAlign_len method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1652 of file Hsp_.hpp.

References CHsp_Base::IsSetAlign_len().

Referenced by CHsp_Base::GetAlign_len().

◆ CanGetBit_score()

bool CHsp_Base::CanGetBit_score ( void  ) const
inline

Check if it is safe to call GetBit_score method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 994 of file Hsp_.hpp.

References CHsp_Base::IsSetBit_score().

Referenced by CHsp_Base::GetBit_score().

◆ CanGetDb()

bool CBlastOutput_Base::CanGetDb ( void  ) const
inline

Check if it is safe to call GetDb method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 723 of file BlastOutput_.hpp.

References CBlastOutput_Base::IsSetDb().

Referenced by CBlastOutput_Base::GetDb().

◆ CanGetDb_len()

bool CStatistics_Base::CanGetDb_len ( void  ) const
inline

Check if it is safe to call GetDb_len method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 454 of file Statistics_.hpp.

References CStatistics_Base::IsSetDb_len().

Referenced by CStatistics_Base::GetDb_len().

◆ CanGetDb_num()

bool CStatistics_Base::CanGetDb_num ( void  ) const
inline

Check if it is safe to call GetDb_num method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 407 of file Statistics_.hpp.

References CStatistics_Base::IsSetDb_num().

Referenced by CStatistics_Base::GetDb_num().

◆ CanGetDef()

bool CHit_Base::CanGetDef ( void  ) const
inline

Check if it is safe to call GetDef method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 466 of file Hit_.hpp.

References CHit_Base::IsSetDef().

Referenced by CHit_Base::GetDef().

◆ CanGetDensity()

bool CHsp_Base::CanGetDensity ( void  ) const
inline

Check if it is safe to call GetDensity method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1699 of file Hsp_.hpp.

References CHsp_Base::IsSetDensity().

Referenced by CHsp_Base::GetDensity().

◆ CanGetEff_space()

bool CStatistics_Base::CanGetEff_space ( void  ) const
inline

Check if it is safe to call GetEff_space method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 548 of file Statistics_.hpp.

References CStatistics_Base::IsSetEff_space().

Referenced by CStatistics_Base::GetEff_space().

◆ CanGetEntrez_query()

bool CParameters_Base::CanGetEntrez_query ( void  ) const
inline

Check if it is safe to call GetEntrez_query method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 961 of file Parameters_.hpp.

References CParameters_Base::IsSetEntrez_query().

Referenced by CParameters_Base::GetEntrez_query().

◆ CanGetEntropy()

bool CStatistics_Base::CanGetEntropy ( void  ) const
inline

Check if it is safe to call GetEntropy method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 689 of file Statistics_.hpp.

References CStatistics_Base::IsSetEntropy().

Referenced by CStatistics_Base::GetEntropy().

◆ CanGetEvalue()

bool CHsp_Base::CanGetEvalue ( void  ) const
inline

Check if it is safe to call GetEvalue method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1088 of file Hsp_.hpp.

References CHsp_Base::IsSetEvalue().

Referenced by CHsp_Base::GetEvalue().

◆ CanGetExpect()

bool CParameters_Base::CanGetExpect ( void  ) const
inline

Check if it is safe to call GetExpect method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 585 of file Parameters_.hpp.

References CParameters_Base::IsSetExpect().

Referenced by CParameters_Base::GetExpect().

◆ CanGetFilter()

bool CParameters_Base::CanGetFilter ( void  ) const
inline

Check if it is safe to call GetFilter method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 867 of file Parameters_.hpp.

References CParameters_Base::IsSetFilter().

Referenced by CParameters_Base::GetFilter().

◆ CanGetGap_extend()

bool CParameters_Base::CanGetGap_extend ( void  ) const
inline

Check if it is safe to call GetGap_extend method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 820 of file Parameters_.hpp.

References CParameters_Base::IsSetGap_extend().

Referenced by CParameters_Base::GetGap_extend().

◆ CanGetGap_open()

bool CParameters_Base::CanGetGap_open ( void  ) const
inline

Check if it is safe to call GetGap_open method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 773 of file Parameters_.hpp.

References CParameters_Base::IsSetGap_open().

Referenced by CParameters_Base::GetGap_open().

◆ CanGetGaps()

bool CHsp_Base::CanGetGaps ( void  ) const
inline

Check if it is safe to call GetGaps method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1605 of file Hsp_.hpp.

References CHsp_Base::IsSetGaps().

Referenced by CHsp_Base::GetGaps().

◆ CanGetHit_frame()

bool CHsp_Base::CanGetHit_frame ( void  ) const
inline

Check if it is safe to call GetHit_frame method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1464 of file Hsp_.hpp.

References CHsp_Base::IsSetHit_frame().

Referenced by CHsp_Base::GetHit_frame().

◆ CanGetHit_from()

bool CHsp_Base::CanGetHit_from ( void  ) const
inline

Check if it is safe to call GetHit_from method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1229 of file Hsp_.hpp.

References CHsp_Base::IsSetHit_from().

Referenced by CHsp_Base::GetHit_from().

◆ CanGetHit_to()

bool CHsp_Base::CanGetHit_to ( void  ) const
inline

Check if it is safe to call GetHit_to method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1276 of file Hsp_.hpp.

References CHsp_Base::IsSetHit_to().

Referenced by CHsp_Base::GetHit_to().

◆ CanGetHits()

bool CIteration_Base::CanGetHits ( void  ) const
inline

Check if it is safe to call GetHits method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 602 of file Iteration_.hpp.

◆ CanGetHseq()

bool CHsp_Base::CanGetHseq ( void  ) const
inline

Check if it is safe to call GetHseq method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1793 of file Hsp_.hpp.

References CHsp_Base::IsSetHseq().

Referenced by CHsp_Base::GetHseq().

◆ CanGetHsp_len()

bool CStatistics_Base::CanGetHsp_len ( void  ) const
inline

Check if it is safe to call GetHsp_len method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 501 of file Statistics_.hpp.

References CStatistics_Base::IsSetHsp_len().

Referenced by CStatistics_Base::GetHsp_len().

◆ CanGetHsps()

bool CHit_Base::CanGetHsps ( void  ) const
inline

Check if it is safe to call GetHsps method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 607 of file Hit_.hpp.

◆ CanGetId()

bool CHit_Base::CanGetId ( void  ) const
inline

Check if it is safe to call GetId method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 419 of file Hit_.hpp.

References CHit_Base::IsSetId().

Referenced by CHit_Base::GetId().

◆ CanGetIdentity()

bool CHsp_Base::CanGetIdentity ( void  ) const
inline

Check if it is safe to call GetIdentity method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1511 of file Hsp_.hpp.

References CHsp_Base::IsSetIdentity().

Referenced by CHsp_Base::GetIdentity().

◆ CanGetInclude()

bool CParameters_Base::CanGetInclude ( void  ) const
inline

Check if it is safe to call GetInclude method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 632 of file Parameters_.hpp.

References CParameters_Base::IsSetInclude().

Referenced by CParameters_Base::GetInclude().

◆ CanGetIter_num()

bool CIteration_Base::CanGetIter_num ( void  ) const
inline

Check if it is safe to call GetIter_num method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 414 of file Iteration_.hpp.

References CIteration_Base::IsSetIter_num().

Referenced by CIteration_Base::GetIter_num().

◆ CanGetIterations()

bool CBlastOutput_Base::CanGetIterations ( void  ) const
inline

Check if it is safe to call GetIterations method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 988 of file BlastOutput_.hpp.

◆ CanGetKappa()

bool CStatistics_Base::CanGetKappa ( void  ) const
inline

Check if it is safe to call GetKappa method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 595 of file Statistics_.hpp.

References CStatistics_Base::IsSetKappa().

Referenced by CStatistics_Base::GetKappa().

◆ CanGetLambda()

bool CStatistics_Base::CanGetLambda ( void  ) const
inline

Check if it is safe to call GetLambda method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 642 of file Statistics_.hpp.

References CStatistics_Base::IsSetLambda().

Referenced by CStatistics_Base::GetLambda().

◆ CanGetLen()

bool CHit_Base::CanGetLen ( void  ) const
inline

Check if it is safe to call GetLen method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 560 of file Hit_.hpp.

References CHit_Base::IsSetLen().

Referenced by CHit_Base::GetLen().

◆ CanGetMatrix()

bool CParameters_Base::CanGetMatrix ( void  ) const
inline

Check if it is safe to call GetMatrix method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 538 of file Parameters_.hpp.

References CParameters_Base::IsSetMatrix().

Referenced by CParameters_Base::GetMatrix().

◆ CanGetMbstat()

bool CBlastOutput_Base::CanGetMbstat ( void  ) const
inline

Check if it is safe to call GetMbstat method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1013 of file BlastOutput_.hpp.

References CBlastOutput_Base::IsSetMbstat().

Referenced by CBlastOutput_Base::GetMbstat().

◆ CanGetMessage()

bool CIteration_Base::CanGetMessage ( void  ) const
inline

Check if it is safe to call GetMessage method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 648 of file Iteration_.hpp.

References CIteration_Base::IsSetMessage().

Referenced by CIteration_Base::GetMessage().

◆ CanGetMidline()

bool CHsp_Base::CanGetMidline ( void  ) const
inline

Check if it is safe to call GetMidline method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1840 of file Hsp_.hpp.

References CHsp_Base::IsSetMidline().

Referenced by CHsp_Base::GetMidline().

◆ CanGetNum() [1/2]

bool CHit_Base::CanGetNum ( void  ) const
inline

Check if it is safe to call GetNum method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 372 of file Hit_.hpp.

References CHit_Base::IsSetNum().

Referenced by CHit_Base::GetNum().

◆ CanGetNum() [2/2]

bool CHsp_Base::CanGetNum ( void  ) const
inline

Check if it is safe to call GetNum method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 947 of file Hsp_.hpp.

References CHsp_Base::IsSetNum().

Referenced by CHsp_Base::GetNum().

◆ CanGetParam()

bool CBlastOutput_Base::CanGetParam ( void  ) const
inline

Check if it is safe to call GetParam method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 958 of file BlastOutput_.hpp.

◆ CanGetPattern()

bool CParameters_Base::CanGetPattern ( void  ) const
inline

Check if it is safe to call GetPattern method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 914 of file Parameters_.hpp.

References CParameters_Base::IsSetPattern().

Referenced by CParameters_Base::GetPattern().

◆ CanGetPattern_from()

bool CHsp_Base::CanGetPattern_from ( void  ) const
inline

Check if it is safe to call GetPattern_from method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1323 of file Hsp_.hpp.

References CHsp_Base::IsSetPattern_from().

Referenced by CHsp_Base::GetPattern_from().

◆ CanGetPattern_to()

bool CHsp_Base::CanGetPattern_to ( void  ) const
inline

Check if it is safe to call GetPattern_to method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1370 of file Hsp_.hpp.

References CHsp_Base::IsSetPattern_to().

Referenced by CHsp_Base::GetPattern_to().

◆ CanGetPositive()

bool CHsp_Base::CanGetPositive ( void  ) const
inline

Check if it is safe to call GetPositive method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1558 of file Hsp_.hpp.

References CHsp_Base::IsSetPositive().

Referenced by CHsp_Base::GetPositive().

◆ CanGetProgram()

bool CBlastOutput_Base::CanGetProgram ( void  ) const
inline

Check if it is safe to call GetProgram method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 582 of file BlastOutput_.hpp.

References CBlastOutput_Base::IsSetProgram().

Referenced by CBlastOutput_Base::GetProgram().

◆ CanGetQseq()

bool CHsp_Base::CanGetQseq ( void  ) const
inline

Check if it is safe to call GetQseq method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1746 of file Hsp_.hpp.

References CHsp_Base::IsSetQseq().

Referenced by CHsp_Base::GetQseq().

◆ CanGetQuery_def() [1/2]

bool CBlastOutput_Base::CanGetQuery_def ( void  ) const
inline

Check if it is safe to call GetQuery_def method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 817 of file BlastOutput_.hpp.

References CBlastOutput_Base::IsSetQuery_def().

Referenced by CBlastOutput_Base::GetQuery_def().

◆ CanGetQuery_def() [2/2]

bool CIteration_Base::CanGetQuery_def ( void  ) const
inline

Check if it is safe to call GetQuery_def method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 508 of file Iteration_.hpp.

References CIteration_Base::IsSetQuery_def().

Referenced by CIteration_Base::GetQuery_def().

◆ CanGetQuery_frame()

bool CHsp_Base::CanGetQuery_frame ( void  ) const
inline

Check if it is safe to call GetQuery_frame method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1417 of file Hsp_.hpp.

References CHsp_Base::IsSetQuery_frame().

Referenced by CHsp_Base::GetQuery_frame().

◆ CanGetQuery_from()

bool CHsp_Base::CanGetQuery_from ( void  ) const
inline

Check if it is safe to call GetQuery_from method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1135 of file Hsp_.hpp.

References CHsp_Base::IsSetQuery_from().

Referenced by CHsp_Base::GetQuery_from().

◆ CanGetQuery_ID() [1/2]

bool CBlastOutput_Base::CanGetQuery_ID ( void  ) const
inline

Check if it is safe to call GetQuery_ID method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 770 of file BlastOutput_.hpp.

References CBlastOutput_Base::IsSetQuery_ID().

Referenced by CBlastOutput_Base::GetQuery_ID().

◆ CanGetQuery_ID() [2/2]

bool CIteration_Base::CanGetQuery_ID ( void  ) const
inline

Check if it is safe to call GetQuery_ID method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 461 of file Iteration_.hpp.

References CIteration_Base::IsSetQuery_ID().

Referenced by CIteration_Base::GetQuery_ID().

◆ CanGetQuery_len() [1/2]

bool CBlastOutput_Base::CanGetQuery_len ( void  ) const
inline

Check if it is safe to call GetQuery_len method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 864 of file BlastOutput_.hpp.

References CBlastOutput_Base::IsSetQuery_len().

Referenced by CBlastOutput_Base::GetQuery_len().

◆ CanGetQuery_len() [2/2]

bool CIteration_Base::CanGetQuery_len ( void  ) const
inline

Check if it is safe to call GetQuery_len method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 555 of file Iteration_.hpp.

References CIteration_Base::IsSetQuery_len().

Referenced by CIteration_Base::GetQuery_len().

◆ CanGetQuery_seq()

bool CBlastOutput_Base::CanGetQuery_seq ( void  ) const
inline

Check if it is safe to call GetQuery_seq method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 911 of file BlastOutput_.hpp.

References CBlastOutput_Base::IsSetQuery_seq().

Referenced by CBlastOutput_Base::GetQuery_seq().

◆ CanGetQuery_to()

bool CHsp_Base::CanGetQuery_to ( void  ) const
inline

Check if it is safe to call GetQuery_to method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1182 of file Hsp_.hpp.

References CHsp_Base::IsSetQuery_to().

Referenced by CHsp_Base::GetQuery_to().

◆ CanGetReference()

bool CBlastOutput_Base::CanGetReference ( void  ) const
inline

Check if it is safe to call GetReference method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 676 of file BlastOutput_.hpp.

References CBlastOutput_Base::IsSetReference().

Referenced by CBlastOutput_Base::GetReference().

◆ CanGetSc_match()

bool CParameters_Base::CanGetSc_match ( void  ) const
inline

Check if it is safe to call GetSc_match method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 679 of file Parameters_.hpp.

References CParameters_Base::IsSetSc_match().

Referenced by CParameters_Base::GetSc_match().

◆ CanGetSc_mismatch()

bool CParameters_Base::CanGetSc_mismatch ( void  ) const
inline

Check if it is safe to call GetSc_mismatch method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 726 of file Parameters_.hpp.

References CParameters_Base::IsSetSc_mismatch().

Referenced by CParameters_Base::GetSc_mismatch().

◆ CanGetScore()

bool CHsp_Base::CanGetScore ( void  ) const
inline

Check if it is safe to call GetScore method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1041 of file Hsp_.hpp.

References CHsp_Base::IsSetScore().

Referenced by CHsp_Base::GetScore().

◆ CanGetStat()

bool CIteration_Base::CanGetStat ( void  ) const
inline

Check if it is safe to call GetStat method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 627 of file Iteration_.hpp.

References CIteration_Base::IsSetStat().

Referenced by CIteration_Base::GetStat().

◆ CanGetVersion()

bool CBlastOutput_Base::CanGetVersion ( void  ) const
inline

Check if it is safe to call GetVersion method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 629 of file BlastOutput_.hpp.

References CBlastOutput_Base::IsSetVersion().

Referenced by CBlastOutput_Base::GetVersion().

◆ CBlastOutput() [1/2]

CBlastOutput::CBlastOutput ( const CBlastOutput value)
private

◆ CBlastOutput() [2/2]

CBlastOutput::CBlastOutput ( void  )
inline

Definition at line 86 of file BlastOutput.hpp.

◆ CBlastOutput_Base() [1/2]

CBlastOutput_Base::CBlastOutput_Base ( const CBlastOutput_Base )
private

◆ CBlastOutput_Base() [2/2]

END_CLASS_INFO CBlastOutput_Base::CBlastOutput_Base ( void  )

◆ CHit() [1/2]

CHit::CHit ( const CHit value)
private

◆ CHit() [2/2]

CHit::CHit ( void  )
inline

Definition at line 86 of file Hit.hpp.

Referenced by CHit::Clone(), and CHit::ResolveSubHitConflicts().

◆ CHit_Base() [1/2]

CHit_Base::CHit_Base ( const CHit_Base )
private

◆ CHit_Base() [2/2]

END_CLASS_INFO CHit_Base::CHit_Base ( void  )

Definition at line 101 of file Hit_.cpp.

References CHit_Base::m_set_State.

◆ CHsp() [1/2]

CHsp::CHsp ( const CHsp value)
private

◆ CHsp() [2/2]

CHsp::CHsp ( void  )
inline

Definition at line 86 of file Hsp.hpp.

◆ CHsp_Base() [1/2]

CHsp_Base::CHsp_Base ( const CHsp_Base )
private

◆ CHsp_Base() [2/2]

END_CLASS_INFO CHsp_Base::CHsp_Base ( void  )

Definition at line 122 of file Hsp_.cpp.

References CHsp_Base::m_set_State.

◆ CIteration() [1/2]

CIteration::CIteration ( const CIteration value)
private

◆ CIteration() [2/2]

CIteration::CIteration ( void  )
inline

Definition at line 86 of file Iteration.hpp.

◆ CIteration_Base() [1/2]

CIteration_Base::CIteration_Base ( const CIteration_Base )
private

◆ CIteration_Base() [2/2]

END_CLASS_INFO CIteration_Base::CIteration_Base ( void  )

Definition at line 121 of file Iteration_.cpp.

References CIteration_Base::m_set_State.

◆ CParameters() [1/2]

CParameters::CParameters ( const CParameters value)
private

◆ CParameters() [2/2]

CParameters::CParameters ( void  )
inline

Definition at line 86 of file Parameters.hpp.

◆ CParameters_Base() [1/2]

CParameters_Base::CParameters_Base ( const CParameters_Base )
private

◆ CParameters_Base() [2/2]

END_CLASS_INFO CParameters_Base::CParameters_Base ( void  )

Definition at line 108 of file Parameters_.cpp.

References CParameters_Base::m_set_State.

◆ CStatistics() [1/2]

CStatistics::CStatistics ( const CStatistics value)
private

◆ CStatistics() [2/2]

CStatistics::CStatistics ( void  )
inline

Definition at line 86 of file Statistics.hpp.

◆ CStatistics_Base() [1/2]

CStatistics_Base::CStatistics_Base ( const CStatistics_Base )
private

◆ CStatistics_Base() [2/2]

END_CLASS_INFO CStatistics_Base::CStatistics_Base ( void  )

Definition at line 78 of file Statistics_.cpp.

References CStatistics_Base::m_set_State.

◆ DECLARE_INTERNAL_TYPE_INFO() [1/6]

CBlastOutput_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [2/6]

CHit_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [3/6]

CHsp_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [4/6]

CIteration_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [5/6]

CParameters_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [6/6]

CStatistics_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ GetAccession()

const CHit_Base::TAccession & CHit_Base::GetAccession ( void  ) const
inline

Get the Accession member data.

Returns
Reference to the member data.

Definition at line 519 of file Hit_.hpp.

References CHit_Base::CanGetAccession(), CHit_Base::m_Accession, and CSerialObject::ThrowUnassigned().

◆ GetAlign_len()

CHsp_Base::TAlign_len CHsp_Base::GetAlign_len ( void  ) const
inline

Get the Align_len member data.

Returns
Copy of the member data.

Definition at line 1665 of file Hsp_.hpp.

References CHsp_Base::CanGetAlign_len(), CHsp_Base::m_Align_len, and CSerialObject::ThrowUnassigned().

◆ GetBit_score()

CHsp_Base::TBit_score CHsp_Base::GetBit_score ( void  ) const
inline

Get the Bit_score member data.

Returns
Copy of the member data.

Definition at line 1007 of file Hsp_.hpp.

References CHsp_Base::CanGetBit_score(), CHsp_Base::m_Bit_score, and CSerialObject::ThrowUnassigned().

◆ GetDb()

const CBlastOutput_Base::TDb & CBlastOutput_Base::GetDb ( void  ) const
inline

Get the Db member data.

Returns
Reference to the member data.

Definition at line 729 of file BlastOutput_.hpp.

References CBlastOutput_Base::CanGetDb(), CBlastOutput_Base::m_Db, and CSerialObject::ThrowUnassigned().

◆ GetDb_len()

CStatistics_Base::TDb_len CStatistics_Base::GetDb_len ( void  ) const
inline

Get the Db_len member data.

Returns
Copy of the member data.

Definition at line 467 of file Statistics_.hpp.

References CStatistics_Base::CanGetDb_len(), CStatistics_Base::m_Db_len, and CSerialObject::ThrowUnassigned().

◆ GetDb_num()

CStatistics_Base::TDb_num CStatistics_Base::GetDb_num ( void  ) const
inline

Get the Db_num member data.

Returns
Copy of the member data.

Definition at line 420 of file Statistics_.hpp.

References CStatistics_Base::CanGetDb_num(), CStatistics_Base::m_Db_num, and CSerialObject::ThrowUnassigned().

◆ GetDef()

const CHit_Base::TDef & CHit_Base::GetDef ( void  ) const
inline

Get the Def member data.

Returns
Reference to the member data.

Definition at line 472 of file Hit_.hpp.

References CHit_Base::CanGetDef(), CHit_Base::m_Def, and CSerialObject::ThrowUnassigned().

◆ GetDensity()

CHsp_Base::TDensity CHsp_Base::GetDensity ( void  ) const
inline

Get the Density member data.

Returns
Copy of the member data.

Definition at line 1712 of file Hsp_.hpp.

References CHsp_Base::CanGetDensity(), CHsp_Base::m_Density, and CSerialObject::ThrowUnassigned().

◆ GetEff_space()

CStatistics_Base::TEff_space CStatistics_Base::GetEff_space ( void  ) const
inline

Get the Eff_space member data.

Returns
Copy of the member data.

Definition at line 561 of file Statistics_.hpp.

References CStatistics_Base::CanGetEff_space(), CStatistics_Base::m_Eff_space, and CSerialObject::ThrowUnassigned().

◆ GetEntrez_query()

const CParameters_Base::TEntrez_query & CParameters_Base::GetEntrez_query ( void  ) const
inline

Get the Entrez_query member data.

Returns
Reference to the member data.

Definition at line 967 of file Parameters_.hpp.

References CParameters_Base::CanGetEntrez_query(), CParameters_Base::m_Entrez_query, and CSerialObject::ThrowUnassigned().

◆ GetEntropy()

CStatistics_Base::TEntropy CStatistics_Base::GetEntropy ( void  ) const
inline

Get the Entropy member data.

Returns
Copy of the member data.

Definition at line 702 of file Statistics_.hpp.

References CStatistics_Base::CanGetEntropy(), CStatistics_Base::m_Entropy, and CSerialObject::ThrowUnassigned().

◆ GetEvalue()

CHsp_Base::TEvalue CHsp_Base::GetEvalue ( void  ) const
inline

Get the Evalue member data.

Returns
Copy of the member data.

Definition at line 1101 of file Hsp_.hpp.

References CHsp_Base::CanGetEvalue(), CHsp_Base::m_Evalue, and CSerialObject::ThrowUnassigned().

◆ GetExpect()

CParameters_Base::TExpect CParameters_Base::GetExpect ( void  ) const
inline

Get the Expect member data.

Returns
Copy of the member data.

Definition at line 598 of file Parameters_.hpp.

References CParameters_Base::CanGetExpect(), CParameters_Base::m_Expect, and CSerialObject::ThrowUnassigned().

◆ GetFilter()

const CParameters_Base::TFilter & CParameters_Base::GetFilter ( void  ) const
inline

Get the Filter member data.

Returns
Reference to the member data.

Definition at line 873 of file Parameters_.hpp.

References CParameters_Base::CanGetFilter(), CParameters_Base::m_Filter, and CSerialObject::ThrowUnassigned().

◆ GetGap_extend()

CParameters_Base::TGap_extend CParameters_Base::GetGap_extend ( void  ) const
inline

Get the Gap_extend member data.

Returns
Copy of the member data.

Definition at line 833 of file Parameters_.hpp.

References CParameters_Base::CanGetGap_extend(), CParameters_Base::m_Gap_extend, and CSerialObject::ThrowUnassigned().

◆ GetGap_open()

CParameters_Base::TGap_open CParameters_Base::GetGap_open ( void  ) const
inline

Get the Gap_open member data.

Returns
Copy of the member data.

Definition at line 786 of file Parameters_.hpp.

References CParameters_Base::CanGetGap_open(), CParameters_Base::m_Gap_open, and CSerialObject::ThrowUnassigned().

◆ GetGaps()

CHsp_Base::TGaps CHsp_Base::GetGaps ( void  ) const
inline

Get the Gaps member data.

Returns
Copy of the member data.

Definition at line 1618 of file Hsp_.hpp.

References CHsp_Base::CanGetGaps(), CHsp_Base::m_Gaps, and CSerialObject::ThrowUnassigned().

◆ GetHit_frame()

CHsp_Base::THit_frame CHsp_Base::GetHit_frame ( void  ) const
inline

Get the Hit_frame member data.

Returns
Copy of the member data.

Definition at line 1477 of file Hsp_.hpp.

References CHsp_Base::CanGetHit_frame(), CHsp_Base::m_Hit_frame, and CSerialObject::ThrowUnassigned().

◆ GetHit_from()

CHsp_Base::THit_from CHsp_Base::GetHit_from ( void  ) const
inline

Get the Hit_from member data.

Returns
Copy of the member data.

Definition at line 1242 of file Hsp_.hpp.

References CHsp_Base::CanGetHit_from(), CHsp_Base::m_Hit_from, and CSerialObject::ThrowUnassigned().

◆ GetHit_to()

CHsp_Base::THit_to CHsp_Base::GetHit_to ( void  ) const
inline

Get the Hit_to member data.

Returns
Copy of the member data.

Definition at line 1289 of file Hsp_.hpp.

References CHsp_Base::CanGetHit_to(), CHsp_Base::m_Hit_to, and CSerialObject::ThrowUnassigned().

◆ GetHits()

const CIteration_Base::THits & CIteration_Base::GetHits ( void  ) const
inline

Get the Hits member data.

Returns
Reference to the member data.

Definition at line 608 of file Iteration_.hpp.

References CIteration_Base::m_Hits.

◆ GetHseq()

const CHsp_Base::THseq & CHsp_Base::GetHseq ( void  ) const
inline

Get the Hseq member data.

Returns
Reference to the member data.

Definition at line 1799 of file Hsp_.hpp.

References CHsp_Base::CanGetHseq(), CHsp_Base::m_Hseq, and CSerialObject::ThrowUnassigned().

◆ GetHsp_len()

CStatistics_Base::THsp_len CStatistics_Base::GetHsp_len ( void  ) const
inline

Get the Hsp_len member data.

Returns
Copy of the member data.

Definition at line 514 of file Statistics_.hpp.

References CStatistics_Base::CanGetHsp_len(), CStatistics_Base::m_Hsp_len, and CSerialObject::ThrowUnassigned().

◆ GetHsps()

const CHit_Base::THsps & CHit_Base::GetHsps ( void  ) const
inline

Get the Hsps member data.

Returns
Reference to the member data.

Definition at line 613 of file Hit_.hpp.

References CHit_Base::m_Hsps.

◆ GetId()

const CHit_Base::TId & CHit_Base::GetId ( void  ) const
inline

Get the Id member data.

Returns
Reference to the member data.

Definition at line 425 of file Hit_.hpp.

References CHit_Base::CanGetId(), CHit_Base::m_Id, and CSerialObject::ThrowUnassigned().

◆ GetIdentity()

CHsp_Base::TIdentity CHsp_Base::GetIdentity ( void  ) const
inline

Get the Identity member data.

Returns
Copy of the member data.

Definition at line 1524 of file Hsp_.hpp.

References CHsp_Base::CanGetIdentity(), CHsp_Base::m_Identity, and CSerialObject::ThrowUnassigned().

◆ GetInclude()

CParameters_Base::TInclude CParameters_Base::GetInclude ( void  ) const
inline

Get the Include member data.

Returns
Copy of the member data.

Definition at line 645 of file Parameters_.hpp.

References CParameters_Base::CanGetInclude(), CParameters_Base::m_Include, and CSerialObject::ThrowUnassigned().

◆ GetIter_num()

CIteration_Base::TIter_num CIteration_Base::GetIter_num ( void  ) const
inline

Get the Iter_num member data.

Returns
Copy of the member data.

Definition at line 427 of file Iteration_.hpp.

References CIteration_Base::CanGetIter_num(), CIteration_Base::m_Iter_num, and CSerialObject::ThrowUnassigned().

◆ GetIterations()

const CBlastOutput_Base::TIterations & CBlastOutput_Base::GetIterations ( void  ) const
inline

Get the Iterations member data.

Returns
Reference to the member data.

Definition at line 994 of file BlastOutput_.hpp.

References CBlastOutput_Base::m_Iterations.

◆ GetKappa()

CStatistics_Base::TKappa CStatistics_Base::GetKappa ( void  ) const
inline

Get the Kappa member data.

Returns
Copy of the member data.

Definition at line 608 of file Statistics_.hpp.

References CStatistics_Base::CanGetKappa(), CStatistics_Base::m_Kappa, and CSerialObject::ThrowUnassigned().

◆ GetLambda()

CStatistics_Base::TLambda CStatistics_Base::GetLambda ( void  ) const
inline

Get the Lambda member data.

Returns
Copy of the member data.

Definition at line 655 of file Statistics_.hpp.

References CStatistics_Base::CanGetLambda(), CStatistics_Base::m_Lambda, and CSerialObject::ThrowUnassigned().

◆ GetLen()

CHit_Base::TLen CHit_Base::GetLen ( void  ) const
inline

Get the Len member data.

Returns
Copy of the member data.

Definition at line 573 of file Hit_.hpp.

References CHit_Base::CanGetLen(), CHit_Base::m_Len, and CSerialObject::ThrowUnassigned().

◆ GetMatrix()

const CParameters_Base::TMatrix & CParameters_Base::GetMatrix ( void  ) const
inline

Get the Matrix member data.

Returns
Reference to the member data.

Definition at line 544 of file Parameters_.hpp.

References CParameters_Base::CanGetMatrix(), CParameters_Base::m_Matrix, and CSerialObject::ThrowUnassigned().

◆ GetMbstat()

const CBlastOutput_Base::TMbstat & CBlastOutput_Base::GetMbstat ( void  ) const
inline

Get the Mbstat member data.

Returns
Reference to the member data.

Definition at line 1019 of file BlastOutput_.hpp.

References CBlastOutput_Base::CanGetMbstat(), CBlastOutput_Base::m_Mbstat, and CSerialObject::ThrowUnassigned().

◆ GetMessage()

const CIteration_Base::TMessage & CIteration_Base::GetMessage ( void  ) const
inline

Get the Message member data.

Returns
Reference to the member data.

Definition at line 654 of file Iteration_.hpp.

References CIteration_Base::CanGetMessage(), CIteration_Base::m_Message, and CSerialObject::ThrowUnassigned().

◆ GetMidline()

const CHsp_Base::TMidline & CHsp_Base::GetMidline ( void  ) const
inline

Get the Midline member data.

Returns
Reference to the member data.

Definition at line 1846 of file Hsp_.hpp.

References CHsp_Base::CanGetMidline(), CHsp_Base::m_Midline, and CSerialObject::ThrowUnassigned().

◆ GetNum() [1/2]

CHit_Base::TNum CHit_Base::GetNum ( void  ) const
inline

Get the Num member data.

Returns
Copy of the member data.

Definition at line 385 of file Hit_.hpp.

References CHit_Base::CanGetNum(), CHit_Base::m_Num, and CSerialObject::ThrowUnassigned().

◆ GetNum() [2/2]

CHsp_Base::TNum CHsp_Base::GetNum ( void  ) const
inline

Get the Num member data.

Returns
Copy of the member data.

Definition at line 960 of file Hsp_.hpp.

References CHsp_Base::CanGetNum(), CHsp_Base::m_Num, and CSerialObject::ThrowUnassigned().

◆ GetParam()

const CBlastOutput_Base::TParam & CBlastOutput_Base::GetParam ( void  ) const
inline

Get the Param member data.

Returns
Reference to the member data.

Definition at line 964 of file BlastOutput_.hpp.

References CBlastOutput_Base::m_Param, and CBlastOutput_Base::ResetParam().

◆ GetPattern()

const CParameters_Base::TPattern & CParameters_Base::GetPattern ( void  ) const
inline

Get the Pattern member data.

Returns
Reference to the member data.

Definition at line 920 of file Parameters_.hpp.

References CParameters_Base::CanGetPattern(), CParameters_Base::m_Pattern, and CSerialObject::ThrowUnassigned().

◆ GetPattern_from()

CHsp_Base::TPattern_from CHsp_Base::GetPattern_from ( void  ) const
inline

Get the Pattern_from member data.

Returns
Copy of the member data.

Definition at line 1336 of file Hsp_.hpp.

References CHsp_Base::CanGetPattern_from(), CHsp_Base::m_Pattern_from, and CSerialObject::ThrowUnassigned().

◆ GetPattern_to()

CHsp_Base::TPattern_to CHsp_Base::GetPattern_to ( void  ) const
inline

Get the Pattern_to member data.

Returns
Copy of the member data.

Definition at line 1383 of file Hsp_.hpp.

References CHsp_Base::CanGetPattern_to(), CHsp_Base::m_Pattern_to, and CSerialObject::ThrowUnassigned().

◆ GetPositive()

CHsp_Base::TPositive CHsp_Base::GetPositive ( void  ) const
inline

Get the Positive member data.

Returns
Copy of the member data.

Definition at line 1571 of file Hsp_.hpp.

References CHsp_Base::CanGetPositive(), CHsp_Base::m_Positive, and CSerialObject::ThrowUnassigned().

◆ GetProgram()

const CBlastOutput_Base::TProgram & CBlastOutput_Base::GetProgram ( void  ) const
inline

Get the Program member data.

Returns
Reference to the member data.

Definition at line 588 of file BlastOutput_.hpp.

References CBlastOutput_Base::CanGetProgram(), CBlastOutput_Base::m_Program, and CSerialObject::ThrowUnassigned().

◆ GetQseq()

const CHsp_Base::TQseq & CHsp_Base::GetQseq ( void  ) const
inline

Get the Qseq member data.

Returns
Reference to the member data.

Definition at line 1752 of file Hsp_.hpp.

References CHsp_Base::CanGetQseq(), CHsp_Base::m_Qseq, and CSerialObject::ThrowUnassigned().

◆ GetQuery_def() [1/2]

const CBlastOutput_Base::TQuery_def & CBlastOutput_Base::GetQuery_def ( void  ) const
inline

Get the Query_def member data.

Returns
Reference to the member data.

Definition at line 823 of file BlastOutput_.hpp.

References CBlastOutput_Base::CanGetQuery_def(), CBlastOutput_Base::m_Query_def, and CSerialObject::ThrowUnassigned().

◆ GetQuery_def() [2/2]

const CIteration_Base::TQuery_def & CIteration_Base::GetQuery_def ( void  ) const
inline

Get the Query_def member data.

Returns
Reference to the member data.

Definition at line 514 of file Iteration_.hpp.

References CIteration_Base::CanGetQuery_def(), CIteration_Base::m_Query_def, and CSerialObject::ThrowUnassigned().

◆ GetQuery_frame()

CHsp_Base::TQuery_frame CHsp_Base::GetQuery_frame ( void  ) const
inline

Get the Query_frame member data.

Returns
Copy of the member data.

Definition at line 1430 of file Hsp_.hpp.

References CHsp_Base::CanGetQuery_frame(), CHsp_Base::m_Query_frame, and CSerialObject::ThrowUnassigned().

◆ GetQuery_from()

CHsp_Base::TQuery_from CHsp_Base::GetQuery_from ( void  ) const
inline

Get the Query_from member data.

Returns
Copy of the member data.

Definition at line 1148 of file Hsp_.hpp.

References CHsp_Base::CanGetQuery_from(), CHsp_Base::m_Query_from, and CSerialObject::ThrowUnassigned().

◆ GetQuery_ID() [1/2]

const CBlastOutput_Base::TQuery_ID & CBlastOutput_Base::GetQuery_ID ( void  ) const
inline

Get the Query_ID member data.

Returns
Reference to the member data.

Definition at line 776 of file BlastOutput_.hpp.

References CBlastOutput_Base::CanGetQuery_ID(), CBlastOutput_Base::m_Query_ID, and CSerialObject::ThrowUnassigned().

◆ GetQuery_ID() [2/2]

const CIteration_Base::TQuery_ID & CIteration_Base::GetQuery_ID ( void  ) const
inline

Get the Query_ID member data.

Returns
Reference to the member data.

Definition at line 467 of file Iteration_.hpp.

References CIteration_Base::CanGetQuery_ID(), CIteration_Base::m_Query_ID, and CSerialObject::ThrowUnassigned().

◆ GetQuery_len() [1/2]

CBlastOutput_Base::TQuery_len CBlastOutput_Base::GetQuery_len ( void  ) const
inline

Get the Query_len member data.

Returns
Copy of the member data.

Definition at line 877 of file BlastOutput_.hpp.

References CBlastOutput_Base::CanGetQuery_len(), CBlastOutput_Base::m_Query_len, and CSerialObject::ThrowUnassigned().

◆ GetQuery_len() [2/2]

CIteration_Base::TQuery_len CIteration_Base::GetQuery_len ( void  ) const
inline

Get the Query_len member data.

Returns
Copy of the member data.

Definition at line 568 of file Iteration_.hpp.

References CIteration_Base::CanGetQuery_len(), CIteration_Base::m_Query_len, and CSerialObject::ThrowUnassigned().

◆ GetQuery_seq()

const CBlastOutput_Base::TQuery_seq & CBlastOutput_Base::GetQuery_seq ( void  ) const
inline

Get the Query_seq member data.

Returns
Reference to the member data.

Definition at line 917 of file BlastOutput_.hpp.

References CBlastOutput_Base::CanGetQuery_seq(), CBlastOutput_Base::m_Query_seq, and CSerialObject::ThrowUnassigned().

◆ GetQuery_to()

CHsp_Base::TQuery_to CHsp_Base::GetQuery_to ( void  ) const
inline

Get the Query_to member data.

Returns
Copy of the member data.

Definition at line 1195 of file Hsp_.hpp.

References CHsp_Base::CanGetQuery_to(), CHsp_Base::m_Query_to, and CSerialObject::ThrowUnassigned().

◆ GetReference()

const CBlastOutput_Base::TReference & CBlastOutput_Base::GetReference ( void  ) const
inline

Get the Reference member data.

Returns
Reference to the member data.

Definition at line 682 of file BlastOutput_.hpp.

References CBlastOutput_Base::CanGetReference(), CBlastOutput_Base::m_Reference, and CSerialObject::ThrowUnassigned().

◆ GetSc_match()

CParameters_Base::TSc_match CParameters_Base::GetSc_match ( void  ) const
inline

Get the Sc_match member data.

Returns
Copy of the member data.

Definition at line 692 of file Parameters_.hpp.

References CParameters_Base::CanGetSc_match(), CParameters_Base::m_Sc_match, and CSerialObject::ThrowUnassigned().

◆ GetSc_mismatch()

CParameters_Base::TSc_mismatch CParameters_Base::GetSc_mismatch ( void  ) const
inline

Get the Sc_mismatch member data.

Returns
Copy of the member data.

Definition at line 739 of file Parameters_.hpp.

References CParameters_Base::CanGetSc_mismatch(), CParameters_Base::m_Sc_mismatch, and CSerialObject::ThrowUnassigned().

◆ GetScore()

CHsp_Base::TScore CHsp_Base::GetScore ( void  ) const
inline

Get the Score member data.

Returns
Copy of the member data.

Definition at line 1054 of file Hsp_.hpp.

References CHsp_Base::CanGetScore(), CHsp_Base::m_Score, and CSerialObject::ThrowUnassigned().

◆ GetStat()

const CIteration_Base::TStat & CIteration_Base::GetStat ( void  ) const
inline

Get the Stat member data.

Returns
Reference to the member data.

Definition at line 633 of file Iteration_.hpp.

References CIteration_Base::CanGetStat(), CIteration_Base::m_Stat, and CSerialObject::ThrowUnassigned().

◆ GetVersion()

const CBlastOutput_Base::TVersion & CBlastOutput_Base::GetVersion ( void  ) const
inline

Get the Version member data.

Returns
Reference to the member data.

Definition at line 635 of file BlastOutput_.hpp.

References CBlastOutput_Base::CanGetVersion(), CBlastOutput_Base::m_Version, and CSerialObject::ThrowUnassigned().

◆ IsSetAccession()

bool CHit_Base::IsSetAccession ( void  ) const
inline

accession Check if a value has been assigned to Accession data member.

Data member Accession is mandatory; its type is defined as 'typedef string TAccession'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 507 of file Hit_.hpp.

References CHit_Base::m_set_State.

Referenced by CHit_Base::CanGetAccession(), and CHit_Base::SetAccession().

◆ IsSetAlign_len()

bool CHsp_Base::IsSetAlign_len ( void  ) const
inline

length of the alignment used Check if a value has been assigned to Align_len data member.

Data member Align_len is optional; its type is defined as 'typedef int TAlign_len'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 1646 of file Hsp_.hpp.

References CHsp_Base::m_set_State.

Referenced by CHsp_Base::CanGetAlign_len(), and CHsp_Base::SetAlign_len().

◆ IsSetBit_score()

bool CHsp_Base::IsSetBit_score ( void  ) const
inline

score (in bits) of HSP Check if a value has been assigned to Bit_score data member.

Data member Bit_score is mandatory; its type is defined as 'typedef double TBit_score'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 988 of file Hsp_.hpp.

References CHsp_Base::m_set_State.

Referenced by CHsp_Base::CanGetBit_score(), and CHsp_Base::SetBit_score().

◆ IsSetDb()

bool CBlastOutput_Base::IsSetDb ( void  ) const
inline

BLAST Database name Check if a value has been assigned to Db data member.

Data member Db is mandatory; its type is defined as 'typedef string TDb'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 717 of file BlastOutput_.hpp.

References CBlastOutput_Base::m_set_State.

Referenced by CBlastOutput_Base::CanGetDb(), and CBlastOutput_Base::SetDb().

◆ IsSetDb_len()

bool CStatistics_Base::IsSetDb_len ( void  ) const
inline

Length of BLAST db Check if a value has been assigned to Db_len data member.

Data member Db_len is mandatory; its type is defined as 'typedef Int8 TDb_len'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 448 of file Statistics_.hpp.

References CStatistics_Base::m_set_State.

Referenced by CStatistics_Base::CanGetDb_len(), and CStatistics_Base::SetDb_len().

◆ IsSetDb_num()

bool CStatistics_Base::IsSetDb_num ( void  ) const
inline

Number of sequences in BLAST db Check if a value has been assigned to Db_num data member.

Data member Db_num is mandatory; its type is defined as 'typedef int TDb_num'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 401 of file Statistics_.hpp.

References CStatistics_Base::m_set_State.

Referenced by CStatistics_Base::CanGetDb_num(), and CStatistics_Base::SetDb_num().

◆ IsSetDef()

bool CHit_Base::IsSetDef ( void  ) const
inline

definition line of subject Check if a value has been assigned to Def data member.

Data member Def is mandatory; its type is defined as 'typedef string TDef'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 460 of file Hit_.hpp.

References CHit_Base::m_set_State.

Referenced by CHit_Base::CanGetDef(), and CHit_Base::SetDef().

◆ IsSetDensity()

bool CHsp_Base::IsSetDensity ( void  ) const
inline

score density Check if a value has been assigned to Density data member.

Data member Density is optional; its type is defined as 'typedef int TDensity'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 1693 of file Hsp_.hpp.

References CHsp_Base::m_set_State.

Referenced by CHsp_Base::CanGetDensity(), and CHsp_Base::SetDensity().

◆ IsSetEff_space()

bool CStatistics_Base::IsSetEff_space ( void  ) const
inline

Effective search space Check if a value has been assigned to Eff_space data member.

Data member Eff_space is mandatory; its type is defined as 'typedef double TEff_space'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 542 of file Statistics_.hpp.

References CStatistics_Base::m_set_State.

Referenced by CStatistics_Base::CanGetEff_space(), and CStatistics_Base::SetEff_space().

◆ IsSetEntrez_query()

bool CParameters_Base::IsSetEntrez_query ( void  ) const
inline

Limit of request to Entrez query Check if a value has been assigned to Entrez_query data member.

Data member Entrez_query is optional; its type is defined as 'typedef string TEntrez_query'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 955 of file Parameters_.hpp.

References CParameters_Base::m_set_State.

Referenced by CParameters_Base::CanGetEntrez_query(), and CParameters_Base::SetEntrez_query().

◆ IsSetEntropy()

bool CStatistics_Base::IsSetEntropy ( void  ) const
inline

Karlin-Altschul parameter H Check if a value has been assigned to Entropy data member.

Data member Entropy is mandatory; its type is defined as 'typedef double TEntropy'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 683 of file Statistics_.hpp.

References CStatistics_Base::m_set_State.

Referenced by CStatistics_Base::CanGetEntropy(), and CStatistics_Base::SetEntropy().

◆ IsSetEvalue()

bool CHsp_Base::IsSetEvalue ( void  ) const
inline

e-value of HSP Check if a value has been assigned to Evalue data member.

Data member Evalue is mandatory; its type is defined as 'typedef double TEvalue'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 1082 of file Hsp_.hpp.

References CHsp_Base::m_set_State.

Referenced by CHsp_Base::CanGetEvalue(), and CHsp_Base::SetEvalue().

◆ IsSetExpect()

bool CParameters_Base::IsSetExpect ( void  ) const
inline

Expectation threshold (-e) Check if a value has been assigned to Expect data member.

Data member Expect is mandatory; its type is defined as 'typedef double TExpect'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 579 of file Parameters_.hpp.

References CParameters_Base::m_set_State.

Referenced by CParameters_Base::CanGetExpect(), and CParameters_Base::SetExpect().

◆ IsSetFilter()

bool CParameters_Base::IsSetFilter ( void  ) const
inline

Filtering options (-F) Check if a value has been assigned to Filter data member.

Data member Filter is optional; its type is defined as 'typedef string TFilter'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 861 of file Parameters_.hpp.

References CParameters_Base::m_set_State.

Referenced by CParameters_Base::CanGetFilter(), and CParameters_Base::SetFilter().

◆ IsSetGap_extend()

bool CParameters_Base::IsSetGap_extend ( void  ) const
inline

Gap extension cost (-E) Check if a value has been assigned to Gap_extend data member.

Data member Gap_extend is mandatory; its type is defined as 'typedef int TGap_extend'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 814 of file Parameters_.hpp.

References CParameters_Base::m_set_State.

Referenced by CParameters_Base::CanGetGap_extend(), and CParameters_Base::SetGap_extend().

◆ IsSetGap_open()

bool CParameters_Base::IsSetGap_open ( void  ) const
inline

Gap opening cost (-G) Check if a value has been assigned to Gap_open data member.

Data member Gap_open is mandatory; its type is defined as 'typedef int TGap_open'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 767 of file Parameters_.hpp.

References CParameters_Base::m_set_State.

Referenced by CParameters_Base::CanGetGap_open(), and CParameters_Base::SetGap_open().

◆ IsSetGaps()

bool CHsp_Base::IsSetGaps ( void  ) const
inline

number of gaps in HSP Check if a value has been assigned to Gaps data member.

Data member Gaps is optional; its type is defined as 'typedef int TGaps'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 1599 of file Hsp_.hpp.

References CHsp_Base::m_set_State.

Referenced by CHsp_Base::CanGetGaps(), and CHsp_Base::SetGaps().

◆ IsSetHit_frame()

bool CHsp_Base::IsSetHit_frame ( void  ) const
inline

translation frame of subject Check if a value has been assigned to Hit_frame data member.

Data member Hit_frame is optional; its type is defined as 'typedef int THit_frame'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 1458 of file Hsp_.hpp.

References CHsp_Base::m_set_State.

Referenced by CHsp_Base::CanGetHit_frame(), and CHsp_Base::SetHit_frame().

◆ IsSetHit_from()

bool CHsp_Base::IsSetHit_from ( void  ) const
inline

start of HSP in subject Check if a value has been assigned to Hit_from data member.

Data member Hit_from is mandatory; its type is defined as 'typedef int THit_from'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 1223 of file Hsp_.hpp.

References CHsp_Base::m_set_State.

Referenced by CHsp_Base::CanGetHit_from(), and CHsp_Base::SetHit_from().

◆ IsSetHit_to()

bool CHsp_Base::IsSetHit_to ( void  ) const
inline

end of HSP in subject Check if a value has been assigned to Hit_to data member.

Data member Hit_to is mandatory; its type is defined as 'typedef int THit_to'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 1270 of file Hsp_.hpp.

References CHsp_Base::m_set_State.

Referenced by CHsp_Base::CanGetHit_to(), and CHsp_Base::SetHit_to().

◆ IsSetHits()

bool CIteration_Base::IsSetHits ( void  ) const
inline

Hits one for every db sequence Check if a value has been assigned to Hits data member.

Data member Hits is optional; its type is defined as 'typedef list< CRef< CHit > > THits'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 596 of file Iteration_.hpp.

References CIteration_Base::m_set_State.

◆ IsSetHseq()

bool CHsp_Base::IsSetHseq ( void  ) const
inline

alignment string for subject (with gaps) Check if a value has been assigned to Hseq data member.

Data member Hseq is mandatory; its type is defined as 'typedef string THseq'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 1787 of file Hsp_.hpp.

References CHsp_Base::m_set_State.

Referenced by CHsp_Base::CanGetHseq(), and CHsp_Base::SetHseq().

◆ IsSetHsp_len()

bool CStatistics_Base::IsSetHsp_len ( void  ) const
inline

Effective HSP length Check if a value has been assigned to Hsp_len data member.

Data member Hsp_len is mandatory; its type is defined as 'typedef int THsp_len'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 495 of file Statistics_.hpp.

References CStatistics_Base::m_set_State.

Referenced by CStatistics_Base::CanGetHsp_len(), and CStatistics_Base::SetHsp_len().

◆ IsSetHsps()

bool CHit_Base::IsSetHsps ( void  ) const
inline

all HSP regions for the given subject Check if a value has been assigned to Hsps data member.

Data member Hsps is optional; its type is defined as 'typedef list< CRef< CHsp > > THsps'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 601 of file Hit_.hpp.

References CHit_Base::m_set_State.

◆ IsSetId()

bool CHit_Base::IsSetId ( void  ) const
inline

SeqId of subject Check if a value has been assigned to Id data member.

Data member Id is mandatory; its type is defined as 'typedef string TId'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 413 of file Hit_.hpp.

References CHit_Base::m_set_State.

Referenced by CHit_Base::CanGetId(), and CHit_Base::SetId().

◆ IsSetIdentity()

bool CHsp_Base::IsSetIdentity ( void  ) const
inline

number of identities in HSP Check if a value has been assigned to Identity data member.

Data member Identity is optional; its type is defined as 'typedef int TIdentity'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 1505 of file Hsp_.hpp.

References CHsp_Base::m_set_State.

Referenced by CHsp_Base::CanGetIdentity(), and CHsp_Base::SetIdentity().

◆ IsSetInclude()

bool CParameters_Base::IsSetInclude ( void  ) const
inline

Inclusion threshold (-h) Check if a value has been assigned to Include data member.

Data member Include is optional; its type is defined as 'typedef double TInclude'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 626 of file Parameters_.hpp.

References CParameters_Base::m_set_State.

Referenced by CParameters_Base::CanGetInclude(), and CParameters_Base::SetInclude().

◆ IsSetIter_num()

bool CIteration_Base::IsSetIter_num ( void  ) const
inline

iteration number Check if a value has been assigned to Iter_num data member.

Data member Iter_num is mandatory; its type is defined as 'typedef int TIter_num'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 408 of file Iteration_.hpp.

References CIteration_Base::m_set_State.

Referenced by CIteration_Base::CanGetIter_num(), and CIteration_Base::SetIter_num().

◆ IsSetIterations()

bool CBlastOutput_Base::IsSetIterations ( void  ) const
inline

Check if a value has been assigned to Iterations data member.

Data member Iterations is mandatory; its type is defined as 'typedef list< CRef< CIteration > > TIterations'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 982 of file BlastOutput_.hpp.

References CBlastOutput_Base::m_set_State.

◆ IsSetKappa()

bool CStatistics_Base::IsSetKappa ( void  ) const
inline

Karlin-Altschul parameter K Check if a value has been assigned to Kappa data member.

Data member Kappa is mandatory; its type is defined as 'typedef double TKappa'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 589 of file Statistics_.hpp.

References CStatistics_Base::m_set_State.

Referenced by CStatistics_Base::CanGetKappa(), and CStatistics_Base::SetKappa().

◆ IsSetLambda()

bool CStatistics_Base::IsSetLambda ( void  ) const
inline

Karlin-Altschul parameter Lambda Check if a value has been assigned to Lambda data member.

Data member Lambda is mandatory; its type is defined as 'typedef double TLambda'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 636 of file Statistics_.hpp.

References CStatistics_Base::m_set_State.

Referenced by CStatistics_Base::CanGetLambda(), and CStatistics_Base::SetLambda().

◆ IsSetLen()

bool CHit_Base::IsSetLen ( void  ) const
inline

length of subject Check if a value has been assigned to Len data member.

Data member Len is mandatory; its type is defined as 'typedef int TLen'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 554 of file Hit_.hpp.

References CHit_Base::m_set_State.

Referenced by CHit_Base::CanGetLen(), and CHit_Base::SetLen().

◆ IsSetMatrix()

bool CParameters_Base::IsSetMatrix ( void  ) const
inline

Matrix used (-M) Check if a value has been assigned to Matrix data member.

Data member Matrix is optional; its type is defined as 'typedef string TMatrix'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 532 of file Parameters_.hpp.

References CParameters_Base::m_set_State.

Referenced by CParameters_Base::CanGetMatrix(), and CParameters_Base::SetMatrix().

◆ IsSetMbstat()

bool CBlastOutput_Base::IsSetMbstat ( void  ) const
inline

Mega BLAST search statistics Check if a value has been assigned to Mbstat data member.

Data member Mbstat is optional; its type is defined as 'typedef CStatistics TMbstat'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 1007 of file BlastOutput_.hpp.

References CBlastOutput_Base::m_Mbstat.

Referenced by CBlastOutput_Base::CanGetMbstat().

◆ IsSetMessage()

bool CIteration_Base::IsSetMessage ( void  ) const
inline

Some (error?) information Check if a value has been assigned to Message data member.

Data member Message is optional; its type is defined as 'typedef string TMessage'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 642 of file Iteration_.hpp.

References CIteration_Base::m_set_State.

Referenced by CIteration_Base::CanGetMessage(), and CIteration_Base::SetMessage().

◆ IsSetMidline()

bool CHsp_Base::IsSetMidline ( void  ) const
inline

formating middle line Check if a value has been assigned to Midline data member.

Data member Midline is optional; its type is defined as 'typedef string TMidline'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 1834 of file Hsp_.hpp.

References CHsp_Base::m_set_State.

Referenced by CHsp_Base::CanGetMidline(), and CHsp_Base::SetMidline().

◆ IsSetNum() [1/2]

bool CHit_Base::IsSetNum ( void  ) const
inline

hit number Check if a value has been assigned to Num data member.

Data member Num is mandatory; its type is defined as 'typedef int TNum'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 366 of file Hit_.hpp.

References CHit_Base::m_set_State.

Referenced by CHit_Base::CanGetNum(), and CHit_Base::SetNum().

◆ IsSetNum() [2/2]

bool CHsp_Base::IsSetNum ( void  ) const
inline

HSP number Check if a value has been assigned to Num data member.

Data member Num is mandatory; its type is defined as 'typedef int TNum'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 941 of file Hsp_.hpp.

References CHsp_Base::m_set_State.

Referenced by CHsp_Base::CanGetNum(), and CHsp_Base::SetNum().

◆ IsSetParam()

bool CBlastOutput_Base::IsSetParam ( void  ) const
inline

search parameters Check if a value has been assigned to Param data member.

Data member Param is mandatory; its type is defined as 'typedef CParameters TParam'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 952 of file BlastOutput_.hpp.

References CBlastOutput_Base::m_Param.

◆ IsSetPattern()

bool CParameters_Base::IsSetPattern ( void  ) const
inline

PHI-BLAST pattern Check if a value has been assigned to Pattern data member.

Data member Pattern is optional; its type is defined as 'typedef string TPattern'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 908 of file Parameters_.hpp.

References CParameters_Base::m_set_State.

Referenced by CParameters_Base::CanGetPattern(), and CParameters_Base::SetPattern().

◆ IsSetPattern_from()

bool CHsp_Base::IsSetPattern_from ( void  ) const
inline

start of PHI-BLAST pattern Check if a value has been assigned to Pattern_from data member.

Data member Pattern_from is optional; its type is defined as 'typedef int TPattern_from'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 1317 of file Hsp_.hpp.

References CHsp_Base::m_set_State.

Referenced by CHsp_Base::CanGetPattern_from(), and CHsp_Base::SetPattern_from().

◆ IsSetPattern_to()

bool CHsp_Base::IsSetPattern_to ( void  ) const
inline

end of PHI-BLAST pattern Check if a value has been assigned to Pattern_to data member.

Data member Pattern_to is optional; its type is defined as 'typedef int TPattern_to'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 1364 of file Hsp_.hpp.

References CHsp_Base::m_set_State.

Referenced by CHsp_Base::CanGetPattern_to(), and CHsp_Base::SetPattern_to().

◆ IsSetPositive()

bool CHsp_Base::IsSetPositive ( void  ) const
inline

number of positives in HSP Check if a value has been assigned to Positive data member.

Data member Positive is optional; its type is defined as 'typedef int TPositive'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 1552 of file Hsp_.hpp.

References CHsp_Base::m_set_State.

Referenced by CHsp_Base::CanGetPositive(), and CHsp_Base::SetPositive().

◆ IsSetProgram()

bool CBlastOutput_Base::IsSetProgram ( void  ) const
inline

BLAST program: blastp, tblastx etc.

Check if a value has been assigned to Program data member.

Data member Program is mandatory; its type is defined as 'typedef string TProgram'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 576 of file BlastOutput_.hpp.

References CBlastOutput_Base::m_set_State.

Referenced by CBlastOutput_Base::CanGetProgram(), and CBlastOutput_Base::SetProgram().

◆ IsSetQseq()

bool CHsp_Base::IsSetQseq ( void  ) const
inline

alignment string for the query (with gaps) Check if a value has been assigned to Qseq data member.

Data member Qseq is mandatory; its type is defined as 'typedef string TQseq'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 1740 of file Hsp_.hpp.

References CHsp_Base::m_set_State.

Referenced by CHsp_Base::CanGetQseq(), and CHsp_Base::SetQseq().

◆ IsSetQuery_def() [1/2]

bool CBlastOutput_Base::IsSetQuery_def ( void  ) const
inline

Definition line of query Check if a value has been assigned to Query_def data member.

Data member Query_def is mandatory; its type is defined as 'typedef string TQuery_def'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 811 of file BlastOutput_.hpp.

References CBlastOutput_Base::m_set_State.

Referenced by CBlastOutput_Base::CanGetQuery_def(), and CBlastOutput_Base::SetQuery_def().

◆ IsSetQuery_def() [2/2]

bool CIteration_Base::IsSetQuery_def ( void  ) const
inline

Definition line of query Check if a value has been assigned to Query_def data member.

Data member Query_def is optional; its type is defined as 'typedef string TQuery_def'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 502 of file Iteration_.hpp.

References CIteration_Base::m_set_State.

Referenced by CIteration_Base::CanGetQuery_def(), and CIteration_Base::SetQuery_def().

◆ IsSetQuery_frame()

bool CHsp_Base::IsSetQuery_frame ( void  ) const
inline

translation frame of query Check if a value has been assigned to Query_frame data member.

Data member Query_frame is optional; its type is defined as 'typedef int TQuery_frame'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 1411 of file Hsp_.hpp.

References CHsp_Base::m_set_State.

Referenced by CHsp_Base::CanGetQuery_frame(), and CHsp_Base::SetQuery_frame().

◆ IsSetQuery_from()

bool CHsp_Base::IsSetQuery_from ( void  ) const
inline

start of HSP in query Check if a value has been assigned to Query_from data member.

Data member Query_from is mandatory; its type is defined as 'typedef int TQuery_from'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 1129 of file Hsp_.hpp.

References CHsp_Base::m_set_State.

Referenced by CHsp_Base::CanGetQuery_from(), and CHsp_Base::SetQuery_from().

◆ IsSetQuery_ID() [1/2]

bool CBlastOutput_Base::IsSetQuery_ID ( void  ) const
inline

SeqId of query Check if a value has been assigned to Query_ID data member.

Data member Query_ID is mandatory; its type is defined as 'typedef string TQuery_ID'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 764 of file BlastOutput_.hpp.

References CBlastOutput_Base::m_set_State.

Referenced by CBlastOutput_Base::CanGetQuery_ID(), and CBlastOutput_Base::SetQuery_ID().

◆ IsSetQuery_ID() [2/2]

bool CIteration_Base::IsSetQuery_ID ( void  ) const
inline

SeqId of query Check if a value has been assigned to Query_ID data member.

Data member Query_ID is optional; its type is defined as 'typedef string TQuery_ID'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 455 of file Iteration_.hpp.

References CIteration_Base::m_set_State.

Referenced by CIteration_Base::CanGetQuery_ID(), and CIteration_Base::SetQuery_ID().

◆ IsSetQuery_len() [1/2]

bool CBlastOutput_Base::IsSetQuery_len ( void  ) const
inline

length of query sequence Check if a value has been assigned to Query_len data member.

Data member Query_len is mandatory; its type is defined as 'typedef int TQuery_len'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 858 of file BlastOutput_.hpp.

References CBlastOutput_Base::m_set_State.

Referenced by CBlastOutput_Base::CanGetQuery_len(), and CBlastOutput_Base::SetQuery_len().

◆ IsSetQuery_len() [2/2]

bool CIteration_Base::IsSetQuery_len ( void  ) const
inline

length of query sequence Check if a value has been assigned to Query_len data member.

Data member Query_len is optional; its type is defined as 'typedef int TQuery_len'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 549 of file Iteration_.hpp.

References CIteration_Base::m_set_State.

Referenced by CIteration_Base::CanGetQuery_len(), and CIteration_Base::SetQuery_len().

◆ IsSetQuery_seq()

bool CBlastOutput_Base::IsSetQuery_seq ( void  ) const
inline

query sequence itself Check if a value has been assigned to Query_seq data member.

Data member Query_seq is optional; its type is defined as 'typedef string TQuery_seq'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 905 of file BlastOutput_.hpp.

References CBlastOutput_Base::m_set_State.

Referenced by CBlastOutput_Base::CanGetQuery_seq(), and CBlastOutput_Base::SetQuery_seq().

◆ IsSetQuery_to()

bool CHsp_Base::IsSetQuery_to ( void  ) const
inline

end of HSP Check if a value has been assigned to Query_to data member.

Data member Query_to is mandatory; its type is defined as 'typedef int TQuery_to'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 1176 of file Hsp_.hpp.

References CHsp_Base::m_set_State.

Referenced by CHsp_Base::CanGetQuery_to(), and CHsp_Base::SetQuery_to().

◆ IsSetReference()

bool CBlastOutput_Base::IsSetReference ( void  ) const
inline

Steven, David, Tom and others Check if a value has been assigned to Reference data member.

Data member Reference is mandatory; its type is defined as 'typedef string TReference'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 670 of file BlastOutput_.hpp.

References CBlastOutput_Base::m_set_State.

Referenced by CBlastOutput_Base::CanGetReference(), and CBlastOutput_Base::SetReference().

◆ IsSetSc_match()

bool CParameters_Base::IsSetSc_match ( void  ) const
inline

match score for NT (-r) Check if a value has been assigned to Sc_match data member.

Data member Sc_match is optional; its type is defined as 'typedef int TSc_match'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 673 of file Parameters_.hpp.

References CParameters_Base::m_set_State.

Referenced by CParameters_Base::CanGetSc_match(), and CParameters_Base::SetSc_match().

◆ IsSetSc_mismatch()

bool CParameters_Base::IsSetSc_mismatch ( void  ) const
inline

mismatch score for NT (-q) Check if a value has been assigned to Sc_mismatch data member.

Data member Sc_mismatch is optional; its type is defined as 'typedef int TSc_mismatch'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 720 of file Parameters_.hpp.

References CParameters_Base::m_set_State.

Referenced by CParameters_Base::CanGetSc_mismatch(), and CParameters_Base::SetSc_mismatch().

◆ IsSetScore()

bool CHsp_Base::IsSetScore ( void  ) const
inline

score of HSP Check if a value has been assigned to Score data member.

Data member Score is mandatory; its type is defined as 'typedef double TScore'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 1035 of file Hsp_.hpp.

References CHsp_Base::m_set_State.

Referenced by CHsp_Base::CanGetScore(), and CHsp_Base::SetScore().

◆ IsSetStat()

bool CIteration_Base::IsSetStat ( void  ) const
inline

search statistics Check if a value has been assigned to Stat data member.

Data member Stat is optional; its type is defined as 'typedef CStatistics TStat'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 621 of file Iteration_.hpp.

References CIteration_Base::m_Stat.

Referenced by CIteration_Base::CanGetStat().

◆ IsSetVersion()

bool CBlastOutput_Base::IsSetVersion ( void  ) const
inline

Program version Check if a value has been assigned to Version data member.

Data member Version is mandatory; its type is defined as 'typedef string TVersion'

Returns
  • true, if a value has been assigned.
  • false, otherwise.

Definition at line 623 of file BlastOutput_.hpp.

References CBlastOutput_Base::m_set_State.

Referenced by CBlastOutput_Base::CanGetVersion(), and CBlastOutput_Base::SetVersion().

◆ operator=() [1/12]

CBlastOutput& CBlastOutput::operator= ( const CBlastOutput value)
private

◆ operator=() [2/12]

CBlastOutput_Base& CBlastOutput_Base::operator= ( const CBlastOutput_Base )
private

◆ operator=() [3/12]

CHit& CHit::operator= ( const CHit value)
private

◆ operator=() [4/12]

CHit_Base& CHit_Base::operator= ( const CHit_Base )
private

◆ operator=() [5/12]

CHsp& CHsp::operator= ( const CHsp value)
private

◆ operator=() [6/12]

CHsp_Base& CHsp_Base::operator= ( const CHsp_Base )
private

◆ operator=() [7/12]

CIteration& CIteration::operator= ( const CIteration value)
private

◆ operator=() [8/12]

CIteration_Base& CIteration_Base::operator= ( const CIteration_Base )
private

◆ operator=() [9/12]

CParameters& CParameters::operator= ( const CParameters value)
private

◆ operator=() [10/12]

CParameters_Base& CParameters_Base::operator= ( const CParameters_Base )
private

◆ operator=() [11/12]

CStatistics& CStatistics::operator= ( const CStatistics value)
private

◆ operator=() [12/12]

CStatistics_Base& CStatistics_Base::operator= ( const CStatistics_Base )
private

◆ Reset() [1/6]

void CBlastOutput_Base::Reset ( void  )
virtual

◆ Reset() [2/6]

void CHit_Base::Reset ( void  )
virtual

◆ Reset() [3/6]

void CHsp_Base::Reset ( void  )
virtual

◆ Reset() [4/6]

void CIteration_Base::Reset ( void  )
virtual

◆ Reset() [5/6]

void CParameters_Base::Reset ( void  )
virtual

◆ Reset() [6/6]

BEGIN_blastxml2_SCOPE void CStatistics_Base::Reset ( void  )
virtual

◆ ResetAccession()

void CHit_Base::ResetAccession ( void  )

Reset Accession data member.

Definition at line 63 of file Hit_.cpp.

References CHit_Base::m_Accession, and CHit_Base::m_set_State.

Referenced by CHit_Base::Reset().

◆ ResetAlign_len()

void CHsp_Base::ResetAlign_len ( void  )
inline

Reset Align_len data member.

Definition at line 1658 of file Hsp_.hpp.

References CHsp_Base::m_Align_len, and CHsp_Base::m_set_State.

Referenced by CHsp_Base::Reset().

◆ ResetBit_score()

void CHsp_Base::ResetBit_score ( void  )
inline

Reset Bit_score data member.

Definition at line 1000 of file Hsp_.hpp.

References CHsp_Base::m_Bit_score, and CHsp_Base::m_set_State.

Referenced by CHsp_Base::Reset().

◆ ResetDb()

void CBlastOutput_Base::ResetDb ( void  )

Reset Db data member.

Definition at line 71 of file BlastOutput_.cpp.

References CBlastOutput_Base::m_Db, and CBlastOutput_Base::m_set_State.

Referenced by CBlastOutput_Base::Reset().

◆ ResetDb_len()

void CStatistics_Base::ResetDb_len ( void  )
inline

Reset Db_len data member.

Definition at line 460 of file Statistics_.hpp.

References CStatistics_Base::m_Db_len, and CStatistics_Base::m_set_State.

Referenced by CStatistics_Base::Reset().

◆ ResetDb_num()

void CStatistics_Base::ResetDb_num ( void  )
inline

Reset Db_num data member.

Definition at line 413 of file Statistics_.hpp.

References CStatistics_Base::m_Db_num, and CStatistics_Base::m_set_State.

Referenced by CStatistics_Base::Reset().

◆ ResetDef()

void CHit_Base::ResetDef ( void  )

Reset Def data member.

Definition at line 57 of file Hit_.cpp.

References CHit_Base::m_Def, and CHit_Base::m_set_State.

Referenced by CHit_Base::Reset().

◆ ResetDensity()

void CHsp_Base::ResetDensity ( void  )
inline

Reset Density data member.

Definition at line 1705 of file Hsp_.hpp.

References CHsp_Base::m_Density, and CHsp_Base::m_set_State.

Referenced by CHsp_Base::Reset().

◆ ResetEff_space()

void CStatistics_Base::ResetEff_space ( void  )
inline

Reset Eff_space data member.

Definition at line 554 of file Statistics_.hpp.

References CStatistics_Base::m_Eff_space, and CStatistics_Base::m_set_State.

Referenced by CStatistics_Base::Reset().

◆ ResetEntrez_query()

void CParameters_Base::ResetEntrez_query ( void  )

Reset Entrez_query data member.

Definition at line 68 of file Parameters_.cpp.

References CParameters_Base::m_Entrez_query, and CParameters_Base::m_set_State.

Referenced by CParameters_Base::Reset().

◆ ResetEntropy()

void CStatistics_Base::ResetEntropy ( void  )
inline

Reset Entropy data member.

Definition at line 695 of file Statistics_.hpp.

References CStatistics_Base::m_Entropy, and CStatistics_Base::m_set_State.

Referenced by CStatistics_Base::Reset().

◆ ResetEvalue()

void CHsp_Base::ResetEvalue ( void  )
inline

Reset Evalue data member.

Definition at line 1094 of file Hsp_.hpp.

References CHsp_Base::m_Evalue, and CHsp_Base::m_set_State.

Referenced by CHsp_Base::Reset().

◆ ResetExpect()

void CParameters_Base::ResetExpect ( void  )
inline

Reset Expect data member.

Definition at line 591 of file Parameters_.hpp.

References CParameters_Base::m_Expect, and CParameters_Base::m_set_State.

Referenced by CParameters_Base::Reset().

◆ ResetFilter()

void CParameters_Base::ResetFilter ( void  )

Reset Filter data member.

Definition at line 56 of file Parameters_.cpp.

References CParameters_Base::m_Filter, and CParameters_Base::m_set_State.

Referenced by CParameters_Base::Reset().

◆ ResetGap_extend()

void CParameters_Base::ResetGap_extend ( void  )
inline

Reset Gap_extend data member.

Definition at line 826 of file Parameters_.hpp.

References CParameters_Base::m_Gap_extend, and CParameters_Base::m_set_State.

Referenced by CParameters_Base::Reset().

◆ ResetGap_open()

void CParameters_Base::ResetGap_open ( void  )
inline

Reset Gap_open data member.

Definition at line 779 of file Parameters_.hpp.

References CParameters_Base::m_Gap_open, and CParameters_Base::m_set_State.

Referenced by CParameters_Base::Reset().

◆ ResetGaps()

void CHsp_Base::ResetGaps ( void  )
inline

Reset Gaps data member.

Definition at line 1611 of file Hsp_.hpp.

References CHsp_Base::m_Gaps, and CHsp_Base::m_set_State.

Referenced by CHsp_Base::Reset().

◆ ResetHit_frame()

void CHsp_Base::ResetHit_frame ( void  )
inline

Reset Hit_frame data member.

Definition at line 1470 of file Hsp_.hpp.

References CHsp_Base::m_Hit_frame, and CHsp_Base::m_set_State.

Referenced by CHsp_Base::Reset().

◆ ResetHit_from()

void CHsp_Base::ResetHit_from ( void  )
inline

Reset Hit_from data member.

Definition at line 1235 of file Hsp_.hpp.

References CHsp_Base::m_Hit_from, and CHsp_Base::m_set_State.

Referenced by CHsp_Base::Reset().

◆ ResetHit_to()

void CHsp_Base::ResetHit_to ( void  )
inline

Reset Hit_to data member.

Definition at line 1282 of file Hsp_.hpp.

References CHsp_Base::m_Hit_to, and CHsp_Base::m_set_State.

Referenced by CHsp_Base::Reset().

◆ ResetHits()

void CIteration_Base::ResetHits ( void  )

Reset Hits data member.

Definition at line 64 of file Iteration_.cpp.

References CIteration_Base::m_Hits, and CIteration_Base::m_set_State.

Referenced by CIteration_Base::Reset().

◆ ResetHseq()

void CHsp_Base::ResetHseq ( void  )

Reset Hseq data member.

Definition at line 56 of file Hsp_.cpp.

References CHsp_Base::m_Hseq, and CHsp_Base::m_set_State.

Referenced by CHsp_Base::Reset().

◆ ResetHsp_len()

void CStatistics_Base::ResetHsp_len ( void  )
inline

Reset Hsp_len data member.

Definition at line 507 of file Statistics_.hpp.

References CStatistics_Base::m_Hsp_len, and CStatistics_Base::m_set_State.

Referenced by CStatistics_Base::Reset().

◆ ResetHsps()

void CHit_Base::ResetHsps ( void  )

Reset Hsps data member.

Definition at line 69 of file Hit_.cpp.

References CHit_Base::m_Hsps, and CHit_Base::m_set_State.

Referenced by CHit_Base::Reset().

◆ ResetId()

void CHit_Base::ResetId ( void  )

Reset Id data member.

Definition at line 51 of file Hit_.cpp.

References CHit_Base::m_Id, and CHit_Base::m_set_State.

Referenced by CHit_Base::Reset().

◆ ResetIdentity()

void CHsp_Base::ResetIdentity ( void  )
inline

Reset Identity data member.

Definition at line 1517 of file Hsp_.hpp.

References CHsp_Base::m_Identity, and CHsp_Base::m_set_State.

Referenced by CHsp_Base::Reset().

◆ ResetInclude()

void CParameters_Base::ResetInclude ( void  )
inline

Reset Include data member.

Definition at line 638 of file Parameters_.hpp.

References CParameters_Base::m_Include, and CParameters_Base::m_set_State.

Referenced by CParameters_Base::Reset().

◆ ResetIter_num()

void CIteration_Base::ResetIter_num ( void  )
inline

Reset Iter_num data member.

Definition at line 420 of file Iteration_.hpp.

References CIteration_Base::m_Iter_num, and CIteration_Base::m_set_State.

Referenced by CIteration_Base::Reset().

◆ ResetIterations()

void CBlastOutput_Base::ResetIterations ( void  )

Reset Iterations data member.

Definition at line 109 of file BlastOutput_.cpp.

References CBlastOutput_Base::m_Iterations, and CBlastOutput_Base::m_set_State.

Referenced by CBlastOutput_Base::Reset().

◆ ResetKappa()

void CStatistics_Base::ResetKappa ( void  )
inline

Reset Kappa data member.

Definition at line 601 of file Statistics_.hpp.

References CStatistics_Base::m_Kappa, and CStatistics_Base::m_set_State.

Referenced by CStatistics_Base::Reset().

◆ ResetLambda()

void CStatistics_Base::ResetLambda ( void  )
inline

Reset Lambda data member.

Definition at line 648 of file Statistics_.hpp.

References CStatistics_Base::m_Lambda, and CStatistics_Base::m_set_State.

Referenced by CStatistics_Base::Reset().

◆ ResetLen()

void CHit_Base::ResetLen ( void  )
inline

Reset Len data member.

Definition at line 566 of file Hit_.hpp.

References CHit_Base::m_Len, and CHit_Base::m_set_State.

Referenced by CHit_Base::Reset().

◆ ResetMatrix()

BEGIN_blastxml2_SCOPE void CParameters_Base::ResetMatrix ( void  )

Reset Matrix data member.

Definition at line 50 of file Parameters_.cpp.

References CParameters_Base::m_Matrix, and CParameters_Base::m_set_State.

Referenced by CParameters_Base::Reset().

◆ ResetMbstat()

void CBlastOutput_Base::ResetMbstat ( void  )

Reset Mbstat data member.

Definition at line 115 of file BlastOutput_.cpp.

References CBlastOutput_Base::m_Mbstat.

Referenced by CBlastOutput_Base::Reset().

◆ ResetMessage()

void CIteration_Base::ResetMessage ( void  )

Reset Message data member.

Definition at line 87 of file Iteration_.cpp.

References CIteration_Base::m_Message, and CIteration_Base::m_set_State.

Referenced by CIteration_Base::Reset().

◆ ResetMidline()

void CHsp_Base::ResetMidline ( void  )

Reset Midline data member.

Definition at line 62 of file Hsp_.cpp.

References CHsp_Base::m_Midline, and CHsp_Base::m_set_State.

Referenced by CHsp_Base::Reset().

◆ ResetNum() [1/2]

void CHit_Base::ResetNum ( void  )
inline

Reset Num data member.

Definition at line 378 of file Hit_.hpp.

References CHit_Base::m_Num, and CHit_Base::m_set_State.

Referenced by CHit_Base::Reset().

◆ ResetNum() [2/2]

void CHsp_Base::ResetNum ( void  )
inline

Reset Num data member.

Definition at line 953 of file Hsp_.hpp.

References CHsp_Base::m_Num, and CHsp_Base::m_set_State.

Referenced by CHsp_Base::Reset().

◆ ResetParam()

void CBlastOutput_Base::ResetParam ( void  )

◆ ResetPattern()

void CParameters_Base::ResetPattern ( void  )

Reset Pattern data member.

Definition at line 62 of file Parameters_.cpp.

References CParameters_Base::m_Pattern, and CParameters_Base::m_set_State.

Referenced by CParameters_Base::Reset().

◆ ResetPattern_from()

void CHsp_Base::ResetPattern_from ( void  )
inline

Reset Pattern_from data member.

Definition at line 1329 of file Hsp_.hpp.

References CHsp_Base::m_Pattern_from, and CHsp_Base::m_set_State.

Referenced by CHsp_Base::Reset().

◆ ResetPattern_to()

void CHsp_Base::ResetPattern_to ( void  )
inline

Reset Pattern_to data member.

Definition at line 1376 of file Hsp_.hpp.

References CHsp_Base::m_Pattern_to, and CHsp_Base::m_set_State.

Referenced by CHsp_Base::Reset().

◆ ResetPositive()

void CHsp_Base::ResetPositive ( void  )
inline

Reset Positive data member.

Definition at line 1564 of file Hsp_.hpp.

References CHsp_Base::m_Positive, and CHsp_Base::m_set_State.

Referenced by CHsp_Base::Reset().

◆ ResetProgram()

void CBlastOutput_Base::ResetProgram ( void  )

Reset Program data member.

Definition at line 53 of file BlastOutput_.cpp.

References CBlastOutput_Base::m_Program, and CBlastOutput_Base::m_set_State.

Referenced by CBlastOutput_Base::Reset().

◆ ResetQseq()

void CHsp_Base::ResetQseq ( void  )

Reset Qseq data member.

Definition at line 50 of file Hsp_.cpp.

References CHsp_Base::m_Qseq, and CHsp_Base::m_set_State.

Referenced by CHsp_Base::Reset().

◆ ResetQuery_def() [1/2]

void CBlastOutput_Base::ResetQuery_def ( void  )

Reset Query_def data member.

Definition at line 83 of file BlastOutput_.cpp.

References CBlastOutput_Base::m_Query_def, and CBlastOutput_Base::m_set_State.

Referenced by CBlastOutput_Base::Reset().

◆ ResetQuery_def() [2/2]

void CIteration_Base::ResetQuery_def ( void  )

Reset Query_def data member.

Definition at line 58 of file Iteration_.cpp.

References CIteration_Base::m_Query_def, and CIteration_Base::m_set_State.

Referenced by CIteration_Base::Reset().

◆ ResetQuery_frame()

void CHsp_Base::ResetQuery_frame ( void  )
inline

Reset Query_frame data member.

Definition at line 1423 of file Hsp_.hpp.

References CHsp_Base::m_Query_frame, and CHsp_Base::m_set_State.

Referenced by CHsp_Base::Reset().

◆ ResetQuery_from()

void CHsp_Base::ResetQuery_from ( void  )
inline

Reset Query_from data member.

Definition at line 1141 of file Hsp_.hpp.

References CHsp_Base::m_Query_from, and CHsp_Base::m_set_State.

Referenced by CHsp_Base::Reset().

◆ ResetQuery_ID() [1/2]

void CBlastOutput_Base::ResetQuery_ID ( void  )

Reset Query_ID data member.

Definition at line 77 of file BlastOutput_.cpp.

References CBlastOutput_Base::m_Query_ID, and CBlastOutput_Base::m_set_State.

Referenced by CBlastOutput_Base::Reset().

◆ ResetQuery_ID() [2/2]

void CIteration_Base::ResetQuery_ID ( void  )

Reset Query_ID data member.

Definition at line 52 of file Iteration_.cpp.

References CIteration_Base::m_Query_ID, and CIteration_Base::m_set_State.

Referenced by CIteration_Base::Reset().

◆ ResetQuery_len() [1/2]

void CBlastOutput_Base::ResetQuery_len ( void  )
inline

Reset Query_len data member.

Definition at line 870 of file BlastOutput_.hpp.

References CBlastOutput_Base::m_Query_len, and CBlastOutput_Base::m_set_State.

Referenced by CBlastOutput_Base::Reset().

◆ ResetQuery_len() [2/2]

void CIteration_Base::ResetQuery_len ( void  )
inline

Reset Query_len data member.

Definition at line 561 of file Iteration_.hpp.

References CIteration_Base::m_Query_len, and CIteration_Base::m_set_State.

Referenced by CIteration_Base::Reset().

◆ ResetQuery_seq()

void CBlastOutput_Base::ResetQuery_seq ( void  )

Reset Query_seq data member.

Definition at line 89 of file BlastOutput_.cpp.

References CBlastOutput_Base::m_Query_seq, and CBlastOutput_Base::m_set_State.

Referenced by CBlastOutput_Base::Reset().

◆ ResetQuery_to()

void CHsp_Base::ResetQuery_to ( void  )
inline

Reset Query_to data member.

Definition at line 1188 of file Hsp_.hpp.

References CHsp_Base::m_Query_to, and CHsp_Base::m_set_State.

Referenced by CHsp_Base::Reset().

◆ ResetReference()

void CBlastOutput_Base::ResetReference ( void  )

Reset Reference data member.

Definition at line 65 of file BlastOutput_.cpp.

References CBlastOutput_Base::m_Reference, and CBlastOutput_Base::m_set_State.

Referenced by CBlastOutput_Base::Reset().

◆ ResetSc_match()

void CParameters_Base::ResetSc_match ( void  )
inline

Reset Sc_match data member.

Definition at line 685 of file Parameters_.hpp.

References CParameters_Base::m_Sc_match, and CParameters_Base::m_set_State.

Referenced by CParameters_Base::Reset().

◆ ResetSc_mismatch()

void CParameters_Base::ResetSc_mismatch ( void  )
inline

Reset Sc_mismatch data member.

Definition at line 732 of file Parameters_.hpp.

References CParameters_Base::m_Sc_mismatch, and CParameters_Base::m_set_State.

Referenced by CParameters_Base::Reset().

◆ ResetScore()

void CHsp_Base::ResetScore ( void  )
inline

Reset Score data member.

Definition at line 1047 of file Hsp_.hpp.

References CHsp_Base::m_Score, and CHsp_Base::m_set_State.

Referenced by CHsp_Base::Reset().

◆ ResetStat()

void CIteration_Base::ResetStat ( void  )

Reset Stat data member.

Definition at line 70 of file Iteration_.cpp.

References CIteration_Base::m_Stat.

Referenced by CIteration_Base::Reset().

◆ ResetVersion()

void CBlastOutput_Base::ResetVersion ( void  )

Reset Version data member.

Definition at line 59 of file BlastOutput_.cpp.

References CBlastOutput_Base::m_set_State, and CBlastOutput_Base::m_Version.

Referenced by CBlastOutput_Base::Reset().

◆ SetAccession() [1/3]

void CHit_Base::SetAccession ( const TAccession value)
inline

Assign a value to Accession data member.

Parameters
valueValue to assign

Definition at line 528 of file Hit_.hpp.

References CHit_Base::m_Accession, CHit_Base::m_set_State, and value.

◆ SetAccession() [2/3]

void CHit_Base::SetAccession ( CHit_Base::TAccession &&  value)
inline

Definition at line 535 of file Hit_.hpp.

References CHit_Base::m_Accession, CHit_Base::m_set_State, and value.

◆ SetAccession() [3/3]

CHit_Base::TAccession & CHit_Base::SetAccession ( void  )
inline

Assign a value to Accession data member.

Returns
Reference to the data value.

Definition at line 542 of file Hit_.hpp.

References CHit_Base::IsSetAccession(), CHit_Base::m_Accession, CHit_Base::m_set_State, and CSerialObject::UnassignedString().

◆ SetAlign_len() [1/2]

void CHsp_Base::SetAlign_len ( CHsp_Base::TAlign_len  value)
inline

Assign a value to Align_len data member.

Parameters
valueValue to assign

Definition at line 1674 of file Hsp_.hpp.

References CHsp_Base::m_Align_len, CHsp_Base::m_set_State, and value.

◆ SetAlign_len() [2/2]

CHsp_Base::TAlign_len & CHsp_Base::SetAlign_len ( void  )
inline

Assign a value to Align_len data member.

Returns
Reference to the data value.

Definition at line 1681 of file Hsp_.hpp.

References CHsp_Base::IsSetAlign_len(), CHsp_Base::m_Align_len, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetBit_score() [1/2]

void CHsp_Base::SetBit_score ( CHsp_Base::TBit_score  value)
inline

Assign a value to Bit_score data member.

Parameters
valueValue to assign

Definition at line 1016 of file Hsp_.hpp.

References CHsp_Base::m_Bit_score, CHsp_Base::m_set_State, and value.

◆ SetBit_score() [2/2]

CHsp_Base::TBit_score & CHsp_Base::SetBit_score ( void  )
inline

Assign a value to Bit_score data member.

Returns
Reference to the data value.

Definition at line 1023 of file Hsp_.hpp.

References CHsp_Base::IsSetBit_score(), CHsp_Base::m_Bit_score, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetDb() [1/3]

void CBlastOutput_Base::SetDb ( const TDb value)
inline

Assign a value to Db data member.

Parameters
valueValue to assign

Definition at line 738 of file BlastOutput_.hpp.

References CBlastOutput_Base::m_Db, CBlastOutput_Base::m_set_State, and value.

Referenced by BlastXML_FormatReport().

◆ SetDb() [2/3]

void CBlastOutput_Base::SetDb ( CBlastOutput_Base::TDb &&  value)
inline

Definition at line 745 of file BlastOutput_.hpp.

References CBlastOutput_Base::m_Db, CBlastOutput_Base::m_set_State, and value.

◆ SetDb() [3/3]

CBlastOutput_Base::TDb & CBlastOutput_Base::SetDb ( void  )
inline

Assign a value to Db data member.

Returns
Reference to the data value.

Definition at line 752 of file BlastOutput_.hpp.

References CBlastOutput_Base::IsSetDb(), CBlastOutput_Base::m_Db, CBlastOutput_Base::m_set_State, and CSerialObject::UnassignedString().

◆ SetDb_len() [1/2]

void CStatistics_Base::SetDb_len ( CStatistics_Base::TDb_len  value)
inline

Assign a value to Db_len data member.

Parameters
valueValue to assign

Definition at line 476 of file Statistics_.hpp.

References CStatistics_Base::m_Db_len, CStatistics_Base::m_set_State, and value.

Referenced by s_BlastXMLGetStatistics().

◆ SetDb_len() [2/2]

CStatistics_Base::TDb_len & CStatistics_Base::SetDb_len ( void  )
inline

Assign a value to Db_len data member.

Returns
Reference to the data value.

Definition at line 483 of file Statistics_.hpp.

References CStatistics_Base::IsSetDb_len(), CStatistics_Base::m_Db_len, CStatistics_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetDb_num() [1/2]

void CStatistics_Base::SetDb_num ( CStatistics_Base::TDb_num  value)
inline

Assign a value to Db_num data member.

Parameters
valueValue to assign

Definition at line 429 of file Statistics_.hpp.

References CStatistics_Base::m_Db_num, CStatistics_Base::m_set_State, and value.

Referenced by s_BlastXMLGetStatistics().

◆ SetDb_num() [2/2]

CStatistics_Base::TDb_num & CStatistics_Base::SetDb_num ( void  )
inline

Assign a value to Db_num data member.

Returns
Reference to the data value.

Definition at line 436 of file Statistics_.hpp.

References CStatistics_Base::IsSetDb_num(), CStatistics_Base::m_Db_num, CStatistics_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetDef() [1/3]

void CHit_Base::SetDef ( const TDef value)
inline

Assign a value to Def data member.

Parameters
valueValue to assign

Definition at line 481 of file Hit_.hpp.

References CHit_Base::m_Def, CHit_Base::m_set_State, and value.

◆ SetDef() [2/3]

void CHit_Base::SetDef ( CHit_Base::TDef &&  value)
inline

Definition at line 488 of file Hit_.hpp.

References CHit_Base::m_Def, CHit_Base::m_set_State, and value.

◆ SetDef() [3/3]

CHit_Base::TDef & CHit_Base::SetDef ( void  )
inline

Assign a value to Def data member.

Returns
Reference to the data value.

Definition at line 495 of file Hit_.hpp.

References CHit_Base::IsSetDef(), CHit_Base::m_Def, CHit_Base::m_set_State, and CSerialObject::UnassignedString().

◆ SetDensity() [1/2]

void CHsp_Base::SetDensity ( CHsp_Base::TDensity  value)
inline

Assign a value to Density data member.

Parameters
valueValue to assign

Definition at line 1721 of file Hsp_.hpp.

References CHsp_Base::m_Density, CHsp_Base::m_set_State, and value.

◆ SetDensity() [2/2]

CHsp_Base::TDensity & CHsp_Base::SetDensity ( void  )
inline

Assign a value to Density data member.

Returns
Reference to the data value.

Definition at line 1728 of file Hsp_.hpp.

References CHsp_Base::IsSetDensity(), CHsp_Base::m_Density, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetEff_space() [1/2]

void CStatistics_Base::SetEff_space ( CStatistics_Base::TEff_space  value)
inline

Assign a value to Eff_space data member.

Parameters
valueValue to assign

Definition at line 570 of file Statistics_.hpp.

References CStatistics_Base::m_Eff_space, CStatistics_Base::m_set_State, and value.

Referenced by s_BlastXMLGetStatistics().

◆ SetEff_space() [2/2]

CStatistics_Base::TEff_space & CStatistics_Base::SetEff_space ( void  )
inline

Assign a value to Eff_space data member.

Returns
Reference to the data value.

Definition at line 577 of file Statistics_.hpp.

References CStatistics_Base::IsSetEff_space(), CStatistics_Base::m_Eff_space, CStatistics_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetEntrez_query() [1/3]

void CParameters_Base::SetEntrez_query ( const TEntrez_query value)
inline

Assign a value to Entrez_query data member.

Parameters
valueValue to assign

Definition at line 976 of file Parameters_.hpp.

References CParameters_Base::m_Entrez_query, CParameters_Base::m_set_State, and value.

◆ SetEntrez_query() [2/3]

void CParameters_Base::SetEntrez_query ( CParameters_Base::TEntrez_query &&  value)
inline

◆ SetEntrez_query() [3/3]

CParameters_Base::TEntrez_query & CParameters_Base::SetEntrez_query ( void  )
inline

Assign a value to Entrez_query data member.

Returns
Reference to the data value.

Definition at line 990 of file Parameters_.hpp.

References CParameters_Base::IsSetEntrez_query(), CParameters_Base::m_Entrez_query, CParameters_Base::m_set_State, and CSerialObject::UnassignedString().

◆ SetEntropy() [1/2]

void CStatistics_Base::SetEntropy ( CStatistics_Base::TEntropy  value)
inline

Assign a value to Entropy data member.

Parameters
valueValue to assign

Definition at line 711 of file Statistics_.hpp.

References CStatistics_Base::m_Entropy, CStatistics_Base::m_set_State, and value.

Referenced by s_BlastXMLGetStatistics().

◆ SetEntropy() [2/2]

CStatistics_Base::TEntropy & CStatistics_Base::SetEntropy ( void  )
inline

Assign a value to Entropy data member.

Returns
Reference to the data value.

Definition at line 718 of file Statistics_.hpp.

References CStatistics_Base::IsSetEntropy(), CStatistics_Base::m_Entropy, CStatistics_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetEvalue() [1/2]

void CHsp_Base::SetEvalue ( CHsp_Base::TEvalue  value)
inline

Assign a value to Evalue data member.

Parameters
valueValue to assign

Definition at line 1110 of file Hsp_.hpp.

References CHsp_Base::m_Evalue, CHsp_Base::m_set_State, and value.

◆ SetEvalue() [2/2]

CHsp_Base::TEvalue & CHsp_Base::SetEvalue ( void  )
inline

Assign a value to Evalue data member.

Returns
Reference to the data value.

Definition at line 1117 of file Hsp_.hpp.

References CHsp_Base::IsSetEvalue(), CHsp_Base::m_Evalue, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetExpect() [1/2]

void CParameters_Base::SetExpect ( CParameters_Base::TExpect  value)
inline

Assign a value to Expect data member.

Parameters
valueValue to assign

Definition at line 607 of file Parameters_.hpp.

References CParameters_Base::m_Expect, CParameters_Base::m_set_State, and value.

Referenced by s_SetBlastXMLParameters().

◆ SetExpect() [2/2]

CParameters_Base::TExpect & CParameters_Base::SetExpect ( void  )
inline

Assign a value to Expect data member.

Returns
Reference to the data value.

Definition at line 614 of file Parameters_.hpp.

References CParameters_Base::IsSetExpect(), CParameters_Base::m_Expect, CParameters_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetFilter() [1/3]

void CParameters_Base::SetFilter ( const TFilter value)
inline

Assign a value to Filter data member.

Parameters
valueValue to assign

Definition at line 882 of file Parameters_.hpp.

References CParameters_Base::m_Filter, CParameters_Base::m_set_State, and value.

Referenced by s_SetBlastXMLParameters().

◆ SetFilter() [2/3]

void CParameters_Base::SetFilter ( CParameters_Base::TFilter &&  value)
inline

Definition at line 889 of file Parameters_.hpp.

References CParameters_Base::m_Filter, CParameters_Base::m_set_State, and value.

◆ SetFilter() [3/3]

CParameters_Base::TFilter & CParameters_Base::SetFilter ( void  )
inline

Assign a value to Filter data member.

Returns
Reference to the data value.

Definition at line 896 of file Parameters_.hpp.

References CParameters_Base::IsSetFilter(), CParameters_Base::m_Filter, CParameters_Base::m_set_State, and CSerialObject::UnassignedString().

◆ SetGap_extend() [1/2]

void CParameters_Base::SetGap_extend ( CParameters_Base::TGap_extend  value)
inline

Assign a value to Gap_extend data member.

Parameters
valueValue to assign

Definition at line 842 of file Parameters_.hpp.

References CParameters_Base::m_Gap_extend, CParameters_Base::m_set_State, and value.

Referenced by s_SetBlastXMLParameters().

◆ SetGap_extend() [2/2]

CParameters_Base::TGap_extend & CParameters_Base::SetGap_extend ( void  )
inline

Assign a value to Gap_extend data member.

Returns
Reference to the data value.

Definition at line 849 of file Parameters_.hpp.

References CParameters_Base::IsSetGap_extend(), CParameters_Base::m_Gap_extend, CParameters_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetGap_open() [1/2]

void CParameters_Base::SetGap_open ( CParameters_Base::TGap_open  value)
inline

Assign a value to Gap_open data member.

Parameters
valueValue to assign

Definition at line 795 of file Parameters_.hpp.

References CParameters_Base::m_Gap_open, CParameters_Base::m_set_State, and value.

Referenced by s_SetBlastXMLParameters().

◆ SetGap_open() [2/2]

CParameters_Base::TGap_open & CParameters_Base::SetGap_open ( void  )
inline

Assign a value to Gap_open data member.

Returns
Reference to the data value.

Definition at line 802 of file Parameters_.hpp.

References CParameters_Base::IsSetGap_open(), CParameters_Base::m_Gap_open, CParameters_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetGaps() [1/2]

void CHsp_Base::SetGaps ( CHsp_Base::TGaps  value)
inline

Assign a value to Gaps data member.

Parameters
valueValue to assign

Definition at line 1627 of file Hsp_.hpp.

References CHsp_Base::m_Gaps, CHsp_Base::m_set_State, and value.

◆ SetGaps() [2/2]

CHsp_Base::TGaps & CHsp_Base::SetGaps ( void  )
inline

Assign a value to Gaps data member.

Returns
Reference to the data value.

Definition at line 1634 of file Hsp_.hpp.

References CHsp_Base::IsSetGaps(), CHsp_Base::m_Gaps, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetHit_frame() [1/2]

void CHsp_Base::SetHit_frame ( CHsp_Base::THit_frame  value)
inline

Assign a value to Hit_frame data member.

Parameters
valueValue to assign

Definition at line 1486 of file Hsp_.hpp.

References CHsp_Base::m_Hit_frame, CHsp_Base::m_set_State, and value.

◆ SetHit_frame() [2/2]

CHsp_Base::THit_frame & CHsp_Base::SetHit_frame ( void  )
inline

Assign a value to Hit_frame data member.

Returns
Reference to the data value.

Definition at line 1493 of file Hsp_.hpp.

References CHsp_Base::IsSetHit_frame(), CHsp_Base::m_Hit_frame, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetHit_from() [1/2]

void CHsp_Base::SetHit_from ( CHsp_Base::THit_from  value)
inline

Assign a value to Hit_from data member.

Parameters
valueValue to assign

Definition at line 1251 of file Hsp_.hpp.

References CHsp_Base::m_Hit_from, CHsp_Base::m_set_State, and value.

◆ SetHit_from() [2/2]

CHsp_Base::THit_from & CHsp_Base::SetHit_from ( void  )
inline

Assign a value to Hit_from data member.

Returns
Reference to the data value.

Definition at line 1258 of file Hsp_.hpp.

References CHsp_Base::IsSetHit_from(), CHsp_Base::m_Hit_from, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetHit_to() [1/2]

void CHsp_Base::SetHit_to ( CHsp_Base::THit_to  value)
inline

Assign a value to Hit_to data member.

Parameters
valueValue to assign

Definition at line 1298 of file Hsp_.hpp.

References CHsp_Base::m_Hit_to, CHsp_Base::m_set_State, and value.

◆ SetHit_to() [2/2]

CHsp_Base::THit_to & CHsp_Base::SetHit_to ( void  )
inline

Assign a value to Hit_to data member.

Returns
Reference to the data value.

Definition at line 1305 of file Hsp_.hpp.

References CHsp_Base::IsSetHit_to(), CHsp_Base::m_Hit_to, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetHits()

CIteration_Base::THits & CIteration_Base::SetHits ( void  )
inline

Assign a value to Hits data member.

Returns
Reference to the data value.

Definition at line 614 of file Iteration_.hpp.

References CIteration_Base::m_Hits, and CIteration_Base::m_set_State.

◆ SetHseq() [1/3]

void CHsp_Base::SetHseq ( const THseq value)
inline

Assign a value to Hseq data member.

Parameters
valueValue to assign

Definition at line 1808 of file Hsp_.hpp.

References CHsp_Base::m_Hseq, CHsp_Base::m_set_State, and value.

◆ SetHseq() [2/3]

void CHsp_Base::SetHseq ( CHsp_Base::THseq &&  value)
inline

Definition at line 1815 of file Hsp_.hpp.

References CHsp_Base::m_Hseq, CHsp_Base::m_set_State, and value.

◆ SetHseq() [3/3]

CHsp_Base::THseq & CHsp_Base::SetHseq ( void  )
inline

Assign a value to Hseq data member.

Returns
Reference to the data value.

Definition at line 1822 of file Hsp_.hpp.

References CHsp_Base::IsSetHseq(), CHsp_Base::m_Hseq, CHsp_Base::m_set_State, and CSerialObject::UnassignedString().

◆ SetHsp_len() [1/2]

void CStatistics_Base::SetHsp_len ( CStatistics_Base::THsp_len  value)
inline

Assign a value to Hsp_len data member.

Parameters
valueValue to assign

Definition at line 523 of file Statistics_.hpp.

References CStatistics_Base::m_Hsp_len, CStatistics_Base::m_set_State, and value.

Referenced by s_BlastXMLGetStatistics().

◆ SetHsp_len() [2/2]

CStatistics_Base::THsp_len & CStatistics_Base::SetHsp_len ( void  )
inline

Assign a value to Hsp_len data member.

Returns
Reference to the data value.

Definition at line 530 of file Statistics_.hpp.

References CStatistics_Base::IsSetHsp_len(), CStatistics_Base::m_Hsp_len, CStatistics_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetHsps()

CHit_Base::THsps & CHit_Base::SetHsps ( void  )
inline

Assign a value to Hsps data member.

Returns
Reference to the data value.

Definition at line 619 of file Hit_.hpp.

References CHit_Base::m_Hsps, and CHit_Base::m_set_State.

◆ SetId() [1/3]

void CHit_Base::SetId ( const TId value)
inline

Assign a value to Id data member.

Parameters
valueValue to assign

Definition at line 434 of file Hit_.hpp.

References CHit_Base::m_Id, CHit_Base::m_set_State, and value.

◆ SetId() [2/3]

void CHit_Base::SetId ( CHit_Base::TId &&  value)
inline

Definition at line 441 of file Hit_.hpp.

References CHit_Base::m_Id, CHit_Base::m_set_State, and value.

◆ SetId() [3/3]

CHit_Base::TId & CHit_Base::SetId ( void  )
inline

Assign a value to Id data member.

Returns
Reference to the data value.

Definition at line 448 of file Hit_.hpp.

References CHit_Base::IsSetId(), CHit_Base::m_Id, CHit_Base::m_set_State, and CSerialObject::UnassignedString().

◆ SetIdentity() [1/2]

void CHsp_Base::SetIdentity ( CHsp_Base::TIdentity  value)
inline

Assign a value to Identity data member.

Parameters
valueValue to assign

Definition at line 1533 of file Hsp_.hpp.

References CHsp_Base::m_Identity, CHsp_Base::m_set_State, and value.

◆ SetIdentity() [2/2]

CHsp_Base::TIdentity & CHsp_Base::SetIdentity ( void  )
inline

Assign a value to Identity data member.

Returns
Reference to the data value.

Definition at line 1540 of file Hsp_.hpp.

References CHsp_Base::IsSetIdentity(), CHsp_Base::m_Identity, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetInclude() [1/2]

void CParameters_Base::SetInclude ( CParameters_Base::TInclude  value)
inline

Assign a value to Include data member.

Parameters
valueValue to assign

Definition at line 654 of file Parameters_.hpp.

References CParameters_Base::m_Include, CParameters_Base::m_set_State, and value.

◆ SetInclude() [2/2]

CParameters_Base::TInclude & CParameters_Base::SetInclude ( void  )
inline

Assign a value to Include data member.

Returns
Reference to the data value.

Definition at line 661 of file Parameters_.hpp.

References CParameters_Base::IsSetInclude(), CParameters_Base::m_Include, CParameters_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetIter_num() [1/2]

void CIteration_Base::SetIter_num ( CIteration_Base::TIter_num  value)
inline

Assign a value to Iter_num data member.

Parameters
valueValue to assign

Definition at line 436 of file Iteration_.hpp.

References CIteration_Base::m_Iter_num, CIteration_Base::m_set_State, and value.

◆ SetIter_num() [2/2]

CIteration_Base::TIter_num & CIteration_Base::SetIter_num ( void  )
inline

Assign a value to Iter_num data member.

Returns
Reference to the data value.

Definition at line 443 of file Iteration_.hpp.

References CIteration_Base::IsSetIter_num(), CIteration_Base::m_Iter_num, CIteration_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetIterations()

CBlastOutput_Base::TIterations & CBlastOutput_Base::SetIterations ( void  )
inline

Assign a value to Iterations data member.

Returns
Reference to the data value.

Definition at line 1000 of file BlastOutput_.hpp.

References CBlastOutput_Base::m_Iterations, and CBlastOutput_Base::m_set_State.

Referenced by s_BlastXMLAddIteration().

◆ SetKappa() [1/2]

void CStatistics_Base::SetKappa ( CStatistics_Base::TKappa  value)
inline

Assign a value to Kappa data member.

Parameters
valueValue to assign

Definition at line 617 of file Statistics_.hpp.

References CStatistics_Base::m_Kappa, CStatistics_Base::m_set_State, and value.

Referenced by s_BlastXMLGetStatistics().

◆ SetKappa() [2/2]

CStatistics_Base::TKappa & CStatistics_Base::SetKappa ( void  )
inline

Assign a value to Kappa data member.

Returns
Reference to the data value.

Definition at line 624 of file Statistics_.hpp.

References CStatistics_Base::IsSetKappa(), CStatistics_Base::m_Kappa, CStatistics_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetLambda() [1/2]

void CStatistics_Base::SetLambda ( CStatistics_Base::TLambda  value)
inline

Assign a value to Lambda data member.

Parameters
valueValue to assign

Definition at line 664 of file Statistics_.hpp.

References CStatistics_Base::m_Lambda, CStatistics_Base::m_set_State, and value.

Referenced by s_BlastXMLGetStatistics().

◆ SetLambda() [2/2]

CStatistics_Base::TLambda & CStatistics_Base::SetLambda ( void  )
inline

Assign a value to Lambda data member.

Returns
Reference to the data value.

Definition at line 671 of file Statistics_.hpp.

References CStatistics_Base::IsSetLambda(), CStatistics_Base::m_Lambda, CStatistics_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetLen() [1/2]

void CHit_Base::SetLen ( CHit_Base::TLen  value)
inline

Assign a value to Len data member.

Parameters
valueValue to assign

Definition at line 582 of file Hit_.hpp.

References CHit_Base::m_Len, CHit_Base::m_set_State, and value.

◆ SetLen() [2/2]

CHit_Base::TLen & CHit_Base::SetLen ( void  )
inline

Assign a value to Len data member.

Returns
Reference to the data value.

Definition at line 589 of file Hit_.hpp.

References CHit_Base::IsSetLen(), CHit_Base::m_Len, CHit_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetMatrix() [1/3]

void CParameters_Base::SetMatrix ( const TMatrix value)
inline

Assign a value to Matrix data member.

Parameters
valueValue to assign

Definition at line 553 of file Parameters_.hpp.

References CParameters_Base::m_Matrix, CParameters_Base::m_set_State, and value.

Referenced by s_SetBlastXMLParameters().

◆ SetMatrix() [2/3]

void CParameters_Base::SetMatrix ( CParameters_Base::TMatrix &&  value)
inline

Definition at line 560 of file Parameters_.hpp.

References CParameters_Base::m_Matrix, CParameters_Base::m_set_State, and value.

◆ SetMatrix() [3/3]

CParameters_Base::TMatrix & CParameters_Base::SetMatrix ( void  )
inline

Assign a value to Matrix data member.

Returns
Reference to the data value.

Definition at line 567 of file Parameters_.hpp.

References CParameters_Base::IsSetMatrix(), CParameters_Base::m_Matrix, CParameters_Base::m_set_State, and CSerialObject::UnassignedString().

◆ SetMbstat() [1/2]

void CBlastOutput_Base::SetMbstat ( CBlastOutput_Base::TMbstat value)

Assign a value to Mbstat data member.

Parameters
valueReference to value.

Definition at line 120 of file BlastOutput_.cpp.

References CBlastOutput_Base::m_Mbstat, and value.

◆ SetMbstat() [2/2]

CBlastOutput_Base::TMbstat & CBlastOutput_Base::SetMbstat ( void  )

Assign a value to Mbstat data member.

Returns
Reference to the data value.

Definition at line 125 of file BlastOutput_.cpp.

References CBlastOutput_Base::m_Mbstat.

◆ SetMessage() [1/3]

void CIteration_Base::SetMessage ( const TMessage value)
inline

Assign a value to Message data member.

Parameters
valueValue to assign

Definition at line 663 of file Iteration_.hpp.

References CIteration_Base::m_Message, CIteration_Base::m_set_State, and value.

◆ SetMessage() [2/3]

void CIteration_Base::SetMessage ( CIteration_Base::TMessage &&  value)
inline

Definition at line 670 of file Iteration_.hpp.

References CIteration_Base::m_Message, CIteration_Base::m_set_State, and value.

◆ SetMessage() [3/3]

CIteration_Base::TMessage & CIteration_Base::SetMessage ( void  )
inline

Assign a value to Message data member.

Returns
Reference to the data value.

Definition at line 677 of file Iteration_.hpp.

References CIteration_Base::IsSetMessage(), CIteration_Base::m_Message, CIteration_Base::m_set_State, and CSerialObject::UnassignedString().

◆ SetMidline() [1/3]

void CHsp_Base::SetMidline ( const TMidline value)
inline

Assign a value to Midline data member.

Parameters
valueValue to assign

Definition at line 1855 of file Hsp_.hpp.

References CHsp_Base::m_Midline, CHsp_Base::m_set_State, and value.

◆ SetMidline() [2/3]

void CHsp_Base::SetMidline ( CHsp_Base::TMidline &&  value)
inline

Definition at line 1862 of file Hsp_.hpp.

References CHsp_Base::m_Midline, CHsp_Base::m_set_State, and value.

◆ SetMidline() [3/3]

CHsp_Base::TMidline & CHsp_Base::SetMidline ( void  )
inline

Assign a value to Midline data member.

Returns
Reference to the data value.

Definition at line 1869 of file Hsp_.hpp.

References CHsp_Base::IsSetMidline(), CHsp_Base::m_Midline, CHsp_Base::m_set_State, and CSerialObject::UnassignedString().

◆ SetNum() [1/4]

void CHit_Base::SetNum ( CHit_Base::TNum  value)
inline

Assign a value to Num data member.

Parameters
valueValue to assign

Definition at line 394 of file Hit_.hpp.

References CHit_Base::m_Num, CHit_Base::m_set_State, and value.

◆ SetNum() [2/4]

void CHsp_Base::SetNum ( CHsp_Base::TNum  value)
inline

Assign a value to Num data member.

Parameters
valueValue to assign

Definition at line 969 of file Hsp_.hpp.

References CHsp_Base::m_Num, CHsp_Base::m_set_State, and value.

◆ SetNum() [3/4]

CHit_Base::TNum & CHit_Base::SetNum ( void  )
inline

Assign a value to Num data member.

Returns
Reference to the data value.

Definition at line 401 of file Hit_.hpp.

References CHit_Base::IsSetNum(), CHit_Base::m_Num, CHit_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetNum() [4/4]

CHsp_Base::TNum & CHsp_Base::SetNum ( void  )
inline

Assign a value to Num data member.

Returns
Reference to the data value.

Definition at line 976 of file Hsp_.hpp.

References CHsp_Base::IsSetNum(), CHsp_Base::m_Num, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetParam() [1/2]

void CBlastOutput_Base::SetParam ( CBlastOutput_Base::TParam value)

Assign a value to Param data member.

Parameters
valueReference to value.

Definition at line 104 of file BlastOutput_.cpp.

References CBlastOutput_Base::m_Param, and value.

Referenced by s_SetBlastXMLParameters().

◆ SetParam() [2/2]

CBlastOutput_Base::TParam & CBlastOutput_Base::SetParam ( void  )
inline

Assign a value to Param data member.

Returns
Reference to the data value.

Definition at line 973 of file BlastOutput_.hpp.

References CBlastOutput_Base::m_Param, and CBlastOutput_Base::ResetParam().

◆ SetPattern() [1/3]

void CParameters_Base::SetPattern ( const TPattern value)
inline

Assign a value to Pattern data member.

Parameters
valueValue to assign

Definition at line 929 of file Parameters_.hpp.

References CParameters_Base::m_Pattern, CParameters_Base::m_set_State, and value.

Referenced by s_SetBlastXMLParameters().

◆ SetPattern() [2/3]

void CParameters_Base::SetPattern ( CParameters_Base::TPattern &&  value)
inline

◆ SetPattern() [3/3]

CParameters_Base::TPattern & CParameters_Base::SetPattern ( void  )
inline

Assign a value to Pattern data member.

Returns
Reference to the data value.

Definition at line 943 of file Parameters_.hpp.

References CParameters_Base::IsSetPattern(), CParameters_Base::m_Pattern, CParameters_Base::m_set_State, and CSerialObject::UnassignedString().

◆ SetPattern_from() [1/2]

void CHsp_Base::SetPattern_from ( CHsp_Base::TPattern_from  value)
inline

Assign a value to Pattern_from data member.

Parameters
valueValue to assign

Definition at line 1345 of file Hsp_.hpp.

References CHsp_Base::m_Pattern_from, CHsp_Base::m_set_State, and value.

◆ SetPattern_from() [2/2]

CHsp_Base::TPattern_from & CHsp_Base::SetPattern_from ( void  )
inline

Assign a value to Pattern_from data member.

Returns
Reference to the data value.

Definition at line 1352 of file Hsp_.hpp.

References CHsp_Base::IsSetPattern_from(), CHsp_Base::m_Pattern_from, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetPattern_to() [1/2]

void CHsp_Base::SetPattern_to ( CHsp_Base::TPattern_to  value)
inline

Assign a value to Pattern_to data member.

Parameters
valueValue to assign

Definition at line 1392 of file Hsp_.hpp.

References CHsp_Base::m_Pattern_to, CHsp_Base::m_set_State, and value.

◆ SetPattern_to() [2/2]

CHsp_Base::TPattern_to & CHsp_Base::SetPattern_to ( void  )
inline

Assign a value to Pattern_to data member.

Returns
Reference to the data value.

Definition at line 1399 of file Hsp_.hpp.

References CHsp_Base::IsSetPattern_to(), CHsp_Base::m_Pattern_to, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetPositive() [1/2]

void CHsp_Base::SetPositive ( CHsp_Base::TPositive  value)
inline

Assign a value to Positive data member.

Parameters
valueValue to assign

Definition at line 1580 of file Hsp_.hpp.

References CHsp_Base::m_Positive, CHsp_Base::m_set_State, and value.

◆ SetPositive() [2/2]

CHsp_Base::TPositive & CHsp_Base::SetPositive ( void  )
inline

Assign a value to Positive data member.

Returns
Reference to the data value.

Definition at line 1587 of file Hsp_.hpp.

References CHsp_Base::IsSetPositive(), CHsp_Base::m_Positive, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetProgram() [1/3]

void CBlastOutput_Base::SetProgram ( const TProgram value)
inline

Assign a value to Program data member.

Parameters
valueValue to assign

Definition at line 597 of file BlastOutput_.hpp.

References CBlastOutput_Base::m_Program, CBlastOutput_Base::m_set_State, and value.

Referenced by BlastXML_FormatReport().

◆ SetProgram() [2/3]

void CBlastOutput_Base::SetProgram ( CBlastOutput_Base::TProgram &&  value)
inline

◆ SetProgram() [3/3]

CBlastOutput_Base::TProgram & CBlastOutput_Base::SetProgram ( void  )
inline

Assign a value to Program data member.

Returns
Reference to the data value.

Definition at line 611 of file BlastOutput_.hpp.

References CBlastOutput_Base::IsSetProgram(), CBlastOutput_Base::m_Program, CBlastOutput_Base::m_set_State, and CSerialObject::UnassignedString().

◆ SetQseq() [1/3]

void CHsp_Base::SetQseq ( const TQseq value)
inline

Assign a value to Qseq data member.

Parameters
valueValue to assign

Definition at line 1761 of file Hsp_.hpp.

References CHsp_Base::m_Qseq, CHsp_Base::m_set_State, and value.

◆ SetQseq() [2/3]

void CHsp_Base::SetQseq ( CHsp_Base::TQseq &&  value)
inline

Definition at line 1768 of file Hsp_.hpp.

References CHsp_Base::m_Qseq, CHsp_Base::m_set_State, and value.

◆ SetQseq() [3/3]

CHsp_Base::TQseq & CHsp_Base::SetQseq ( void  )
inline

Assign a value to Qseq data member.

Returns
Reference to the data value.

Definition at line 1775 of file Hsp_.hpp.

References CHsp_Base::IsSetQseq(), CHsp_Base::m_Qseq, CHsp_Base::m_set_State, and CSerialObject::UnassignedString().

◆ SetQuery_def() [1/6]

void CBlastOutput_Base::SetQuery_def ( const TQuery_def value)
inline

Assign a value to Query_def data member.

Parameters
valueValue to assign

Definition at line 832 of file BlastOutput_.hpp.

References CBlastOutput_Base::m_Query_def, CBlastOutput_Base::m_set_State, and value.

Referenced by BlastXML_FormatReport().

◆ SetQuery_def() [2/6]

void CIteration_Base::SetQuery_def ( const TQuery_def value)
inline

Assign a value to Query_def data member.

Parameters
valueValue to assign

Definition at line 523 of file Iteration_.hpp.

References CIteration_Base::m_Query_def, CIteration_Base::m_set_State, and value.

◆ SetQuery_def() [3/6]

void CBlastOutput_Base::SetQuery_def ( CBlastOutput_Base::TQuery_def &&  value)
inline

◆ SetQuery_def() [4/6]

void CIteration_Base::SetQuery_def ( CIteration_Base::TQuery_def &&  value)
inline

Definition at line 530 of file Iteration_.hpp.

References CIteration_Base::m_Query_def, CIteration_Base::m_set_State, and value.

◆ SetQuery_def() [5/6]

CBlastOutput_Base::TQuery_def & CBlastOutput_Base::SetQuery_def ( void  )
inline

Assign a value to Query_def data member.

Returns
Reference to the data value.

Definition at line 846 of file BlastOutput_.hpp.

References CBlastOutput_Base::IsSetQuery_def(), CBlastOutput_Base::m_Query_def, CBlastOutput_Base::m_set_State, and CSerialObject::UnassignedString().

◆ SetQuery_def() [6/6]

CIteration_Base::TQuery_def & CIteration_Base::SetQuery_def ( void  )
inline

Assign a value to Query_def data member.

Returns
Reference to the data value.

Definition at line 537 of file Iteration_.hpp.

References CIteration_Base::IsSetQuery_def(), CIteration_Base::m_Query_def, CIteration_Base::m_set_State, and CSerialObject::UnassignedString().

◆ SetQuery_frame() [1/2]

void CHsp_Base::SetQuery_frame ( CHsp_Base::TQuery_frame  value)
inline

Assign a value to Query_frame data member.

Parameters
valueValue to assign

Definition at line 1439 of file Hsp_.hpp.

References CHsp_Base::m_Query_frame, CHsp_Base::m_set_State, and value.

◆ SetQuery_frame() [2/2]

CHsp_Base::TQuery_frame & CHsp_Base::SetQuery_frame ( void  )
inline

Assign a value to Query_frame data member.

Returns
Reference to the data value.

Definition at line 1446 of file Hsp_.hpp.

References CHsp_Base::IsSetQuery_frame(), CHsp_Base::m_Query_frame, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetQuery_from() [1/2]

void CHsp_Base::SetQuery_from ( CHsp_Base::TQuery_from  value)
inline

Assign a value to Query_from data member.

Parameters
valueValue to assign

Definition at line 1157 of file Hsp_.hpp.

References CHsp_Base::m_Query_from, CHsp_Base::m_set_State, and value.

◆ SetQuery_from() [2/2]

CHsp_Base::TQuery_from & CHsp_Base::SetQuery_from ( void  )
inline

Assign a value to Query_from data member.

Returns
Reference to the data value.

Definition at line 1164 of file Hsp_.hpp.

References CHsp_Base::IsSetQuery_from(), CHsp_Base::m_Query_from, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetQuery_ID() [1/6]

void CBlastOutput_Base::SetQuery_ID ( const TQuery_ID value)
inline

Assign a value to Query_ID data member.

Parameters
valueValue to assign

Definition at line 785 of file BlastOutput_.hpp.

References CBlastOutput_Base::m_Query_ID, CBlastOutput_Base::m_set_State, and value.

Referenced by BlastXML_FormatReport().

◆ SetQuery_ID() [2/6]

void CIteration_Base::SetQuery_ID ( const TQuery_ID value)
inline

Assign a value to Query_ID data member.

Parameters
valueValue to assign

Definition at line 476 of file Iteration_.hpp.

References CIteration_Base::m_Query_ID, CIteration_Base::m_set_State, and value.

◆ SetQuery_ID() [3/6]

void CBlastOutput_Base::SetQuery_ID ( CBlastOutput_Base::TQuery_ID &&  value)
inline

◆ SetQuery_ID() [4/6]

void CIteration_Base::SetQuery_ID ( CIteration_Base::TQuery_ID &&  value)
inline

Definition at line 483 of file Iteration_.hpp.

References CIteration_Base::m_Query_ID, CIteration_Base::m_set_State, and value.

◆ SetQuery_ID() [5/6]

CBlastOutput_Base::TQuery_ID & CBlastOutput_Base::SetQuery_ID ( void  )
inline

Assign a value to Query_ID data member.

Returns
Reference to the data value.

Definition at line 799 of file BlastOutput_.hpp.

References CBlastOutput_Base::IsSetQuery_ID(), CBlastOutput_Base::m_Query_ID, CBlastOutput_Base::m_set_State, and CSerialObject::UnassignedString().

◆ SetQuery_ID() [6/6]

CIteration_Base::TQuery_ID & CIteration_Base::SetQuery_ID ( void  )
inline

Assign a value to Query_ID data member.

Returns
Reference to the data value.

Definition at line 490 of file Iteration_.hpp.

References CIteration_Base::IsSetQuery_ID(), CIteration_Base::m_Query_ID, CIteration_Base::m_set_State, and CSerialObject::UnassignedString().

◆ SetQuery_len() [1/4]

void CBlastOutput_Base::SetQuery_len ( CBlastOutput_Base::TQuery_len  value)
inline

Assign a value to Query_len data member.

Parameters
valueValue to assign

Definition at line 886 of file BlastOutput_.hpp.

References CBlastOutput_Base::m_Query_len, CBlastOutput_Base::m_set_State, and value.

Referenced by BlastXML_FormatReport().

◆ SetQuery_len() [2/4]

void CIteration_Base::SetQuery_len ( CIteration_Base::TQuery_len  value)
inline

Assign a value to Query_len data member.

Parameters
valueValue to assign

Definition at line 577 of file Iteration_.hpp.

References CIteration_Base::m_Query_len, CIteration_Base::m_set_State, and value.

◆ SetQuery_len() [3/4]

CBlastOutput_Base::TQuery_len & CBlastOutput_Base::SetQuery_len ( void  )
inline

Assign a value to Query_len data member.

Returns
Reference to the data value.

Definition at line 893 of file BlastOutput_.hpp.

References CBlastOutput_Base::IsSetQuery_len(), CBlastOutput_Base::m_Query_len, CBlastOutput_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetQuery_len() [4/4]

CIteration_Base::TQuery_len & CIteration_Base::SetQuery_len ( void  )
inline

Assign a value to Query_len data member.

Returns
Reference to the data value.

Definition at line 584 of file Iteration_.hpp.

References CIteration_Base::IsSetQuery_len(), CIteration_Base::m_Query_len, CIteration_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetQuery_seq() [1/3]

void CBlastOutput_Base::SetQuery_seq ( const TQuery_seq value)
inline

Assign a value to Query_seq data member.

Parameters
valueValue to assign

Definition at line 926 of file BlastOutput_.hpp.

References CBlastOutput_Base::m_Query_seq, CBlastOutput_Base::m_set_State, and value.

◆ SetQuery_seq() [2/3]

void CBlastOutput_Base::SetQuery_seq ( CBlastOutput_Base::TQuery_seq &&  value)
inline

◆ SetQuery_seq() [3/3]

CBlastOutput_Base::TQuery_seq & CBlastOutput_Base::SetQuery_seq ( void  )
inline

Assign a value to Query_seq data member.

Returns
Reference to the data value.

Definition at line 940 of file BlastOutput_.hpp.

References CBlastOutput_Base::IsSetQuery_seq(), CBlastOutput_Base::m_Query_seq, CBlastOutput_Base::m_set_State, and CSerialObject::UnassignedString().

◆ SetQuery_to() [1/2]

void CHsp_Base::SetQuery_to ( CHsp_Base::TQuery_to  value)
inline

Assign a value to Query_to data member.

Parameters
valueValue to assign

Definition at line 1204 of file Hsp_.hpp.

References CHsp_Base::m_Query_to, CHsp_Base::m_set_State, and value.

◆ SetQuery_to() [2/2]

CHsp_Base::TQuery_to & CHsp_Base::SetQuery_to ( void  )
inline

Assign a value to Query_to data member.

Returns
Reference to the data value.

Definition at line 1211 of file Hsp_.hpp.

References CHsp_Base::IsSetQuery_to(), CHsp_Base::m_Query_to, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetReference() [1/3]

void CBlastOutput_Base::SetReference ( const TReference value)
inline

Assign a value to Reference data member.

Parameters
valueValue to assign

Definition at line 691 of file BlastOutput_.hpp.

References CBlastOutput_Base::m_Reference, CBlastOutput_Base::m_set_State, and value.

Referenced by BlastXML_FormatReport().

◆ SetReference() [2/3]

void CBlastOutput_Base::SetReference ( CBlastOutput_Base::TReference &&  value)
inline

◆ SetReference() [3/3]

CBlastOutput_Base::TReference & CBlastOutput_Base::SetReference ( void  )
inline

Assign a value to Reference data member.

Returns
Reference to the data value.

Definition at line 705 of file BlastOutput_.hpp.

References CBlastOutput_Base::IsSetReference(), CBlastOutput_Base::m_Reference, CBlastOutput_Base::m_set_State, and CSerialObject::UnassignedString().

◆ SetSc_match() [1/2]

void CParameters_Base::SetSc_match ( CParameters_Base::TSc_match  value)
inline

Assign a value to Sc_match data member.

Parameters
valueValue to assign

Definition at line 701 of file Parameters_.hpp.

References CParameters_Base::m_Sc_match, CParameters_Base::m_set_State, and value.

Referenced by s_SetBlastXMLParameters().

◆ SetSc_match() [2/2]

CParameters_Base::TSc_match & CParameters_Base::SetSc_match ( void  )
inline

Assign a value to Sc_match data member.

Returns
Reference to the data value.

Definition at line 708 of file Parameters_.hpp.

References CParameters_Base::IsSetSc_match(), CParameters_Base::m_Sc_match, CParameters_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetSc_mismatch() [1/2]

void CParameters_Base::SetSc_mismatch ( CParameters_Base::TSc_mismatch  value)
inline

Assign a value to Sc_mismatch data member.

Parameters
valueValue to assign

Definition at line 748 of file Parameters_.hpp.

References CParameters_Base::m_Sc_mismatch, CParameters_Base::m_set_State, and value.

Referenced by s_SetBlastXMLParameters().

◆ SetSc_mismatch() [2/2]

CParameters_Base::TSc_mismatch & CParameters_Base::SetSc_mismatch ( void  )
inline

Assign a value to Sc_mismatch data member.

Returns
Reference to the data value.

Definition at line 755 of file Parameters_.hpp.

References CParameters_Base::IsSetSc_mismatch(), CParameters_Base::m_Sc_mismatch, CParameters_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetScore() [1/2]

void CHsp_Base::SetScore ( CHsp_Base::TScore  value)
inline

Assign a value to Score data member.

Parameters
valueValue to assign

Definition at line 1063 of file Hsp_.hpp.

References CHsp_Base::m_Score, CHsp_Base::m_set_State, and value.

◆ SetScore() [2/2]

CHsp_Base::TScore & CHsp_Base::SetScore ( void  )
inline

Assign a value to Score data member.

Returns
Reference to the data value.

Definition at line 1070 of file Hsp_.hpp.

References CHsp_Base::IsSetScore(), CHsp_Base::m_Score, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ SetStat() [1/2]

void CIteration_Base::SetStat ( CIteration_Base::TStat value)

Assign a value to Stat data member.

Parameters
valueReference to value.

Definition at line 75 of file Iteration_.cpp.

References CIteration_Base::m_Stat, and value.

◆ SetStat() [2/2]

CIteration_Base::TStat & CIteration_Base::SetStat ( void  )

Assign a value to Stat data member.

Returns
Reference to the data value.

Definition at line 80 of file Iteration_.cpp.

References CIteration_Base::m_Stat.

◆ SetVersion() [1/3]

void CBlastOutput_Base::SetVersion ( const TVersion value)
inline

Assign a value to Version data member.

Parameters
valueValue to assign

Definition at line 644 of file BlastOutput_.hpp.

References CBlastOutput_Base::m_set_State, CBlastOutput_Base::m_Version, and value.

Referenced by BlastXML_FormatReport().

◆ SetVersion() [2/3]

void CBlastOutput_Base::SetVersion ( CBlastOutput_Base::TVersion &&  value)
inline

◆ SetVersion() [3/3]

CBlastOutput_Base::TVersion & CBlastOutput_Base::SetVersion ( void  )
inline

Assign a value to Version data member.

Returns
Reference to the data value.

Definition at line 658 of file BlastOutput_.hpp.

References CBlastOutput_Base::IsSetVersion(), CBlastOutput_Base::m_set_State, CBlastOutput_Base::m_Version, and CSerialObject::UnassignedString().

◆ ~CBlastOutput()

CBlastOutput::~CBlastOutput ( void  )

Definition at line 50 of file BlastOutput.cpp.

◆ ~CBlastOutput_Base()

CBlastOutput_Base::~CBlastOutput_Base ( void  )
virtual

Definition at line 178 of file BlastOutput_.cpp.

◆ ~CHit()

CHit::~CHit ( void  )

◆ ~CHit_Base()

CHit_Base::~CHit_Base ( void  )
virtual

Definition at line 108 of file Hit_.cpp.

◆ ~CHsp()

BEGIN_blastxml2_SCOPE CHsp::~CHsp ( void  )

Definition at line 50 of file Hsp.cpp.

◆ ~CHsp_Base()

CHsp_Base::~CHsp_Base ( void  )
virtual

Definition at line 129 of file Hsp_.cpp.

◆ ~CIteration()

BEGIN_blastxml2_SCOPE CIteration::~CIteration ( void  )

Definition at line 50 of file Iteration.cpp.

◆ ~CIteration_Base()

CIteration_Base::~CIteration_Base ( void  )
virtual

Definition at line 128 of file Iteration_.cpp.

◆ ~CParameters()

BEGIN_blastxml2_SCOPE CParameters::~CParameters ( void  )

Definition at line 50 of file Parameters.cpp.

◆ ~CParameters_Base()

CParameters_Base::~CParameters_Base ( void  )
virtual

Definition at line 115 of file Parameters_.cpp.

◆ ~CStatistics()

BEGIN_blastxml2_SCOPE CStatistics::~CStatistics ( void  )

Definition at line 50 of file Statistics.cpp.

◆ ~CStatistics_Base()

CStatistics_Base::~CStatistics_Base ( void  )
virtual

Definition at line 85 of file Statistics_.cpp.

Variable Documentation

◆ m_Accession

string CHit_Base::m_Accession
private

◆ m_Align_len

int CHsp_Base::m_Align_len
private

◆ m_Bit_score

double CHsp_Base::m_Bit_score
private

◆ m_Db

string CBlastOutput_Base::m_Db
private

◆ m_Db_len

Int8 CStatistics_Base::m_Db_len
private

◆ m_Db_num

int CStatistics_Base::m_Db_num
private

◆ m_Def

string CHit_Base::m_Def
private

Definition at line 350 of file Hit_.hpp.

Referenced by CHit_Base::GetDef(), CHit_Base::ResetDef(), and CHit_Base::SetDef().

◆ m_Density

int CHsp_Base::m_Density
private

Definition at line 925 of file Hsp_.hpp.

Referenced by CHsp_Base::GetDensity(), CHsp_Base::ResetDensity(), and CHsp_Base::SetDensity().

◆ m_Eff_space

double CStatistics_Base::m_Eff_space
private

◆ m_Entrez_query

string CParameters_Base::m_Entrez_query
private

◆ m_Entropy

double CStatistics_Base::m_Entropy
private

◆ m_Evalue

double CHsp_Base::m_Evalue
private

Definition at line 912 of file Hsp_.hpp.

Referenced by CHsp_Base::GetEvalue(), CHsp_Base::ResetEvalue(), and CHsp_Base::SetEvalue().

◆ m_Expect

double CParameters_Base::m_Expect
private

◆ m_Filter

string CParameters_Base::m_Filter
private

◆ m_Gap_extend

int CParameters_Base::m_Gap_extend
private

◆ m_Gap_open

int CParameters_Base::m_Gap_open
private

◆ m_Gaps

int CHsp_Base::m_Gaps
private

Definition at line 923 of file Hsp_.hpp.

Referenced by CHsp_Base::GetGaps(), CHsp_Base::ResetGaps(), and CHsp_Base::SetGaps().

◆ m_Hit_frame

int CHsp_Base::m_Hit_frame
private

◆ m_Hit_from

int CHsp_Base::m_Hit_from
private

◆ m_Hit_to

int CHsp_Base::m_Hit_to
private

Definition at line 916 of file Hsp_.hpp.

Referenced by CHsp_Base::GetHit_to(), CHsp_Base::ResetHit_to(), and CHsp_Base::SetHit_to().

◆ m_Hits

list< CRef< CHit > > CIteration_Base::m_Hits
private

◆ m_Hseq

string CHsp_Base::m_Hseq
private

Definition at line 927 of file Hsp_.hpp.

Referenced by CHsp_Base::GetHseq(), CHsp_Base::ResetHseq(), and CHsp_Base::SetHseq().

◆ m_Hsp_len

int CStatistics_Base::m_Hsp_len
private

◆ m_Hsps

list< CRef< CHsp > > CHit_Base::m_Hsps
private

Definition at line 353 of file Hit_.hpp.

Referenced by CHit_Base::GetHsps(), CHit_Base::ResetHsps(), and CHit_Base::SetHsps().

◆ m_Id

string CHit_Base::m_Id
private

Definition at line 349 of file Hit_.hpp.

Referenced by CHit_Base::GetId(), CHit_Base::ResetId(), and CHit_Base::SetId().

◆ m_Identity

int CHsp_Base::m_Identity
private

◆ m_Include

double CParameters_Base::m_Include
private

◆ m_Iter_num

int CIteration_Base::m_Iter_num
private

◆ m_Iterations

list< CRef< CIteration > > CBlastOutput_Base::m_Iterations
private

◆ m_Kappa

double CStatistics_Base::m_Kappa
private

◆ m_Lambda

double CStatistics_Base::m_Lambda
private

◆ m_Len

int CHit_Base::m_Len
private

Definition at line 352 of file Hit_.hpp.

Referenced by CHit_Base::GetLen(), CHit_Base::ResetLen(), and CHit_Base::SetLen().

◆ m_Matrix

string CParameters_Base::m_Matrix
private

◆ m_Mbstat

CRef< TMbstat > CBlastOutput_Base::m_Mbstat
private

◆ m_Message

string CIteration_Base::m_Message
private

◆ m_Midline

string CHsp_Base::m_Midline
private

Definition at line 928 of file Hsp_.hpp.

Referenced by CHsp_Base::GetMidline(), CHsp_Base::ResetMidline(), and CHsp_Base::SetMidline().

◆ m_Num [1/2]

int CHit_Base::m_Num
private

Definition at line 348 of file Hit_.hpp.

Referenced by CHit_Base::GetNum(), CHit_Base::ResetNum(), and CHit_Base::SetNum().

◆ m_Num [2/2]

int CHsp_Base::m_Num
private

Definition at line 909 of file Hsp_.hpp.

Referenced by CHsp_Base::GetNum(), CHsp_Base::ResetNum(), and CHsp_Base::SetNum().

◆ m_Param

CRef< TParam > CBlastOutput_Base::m_Param
private

◆ m_Pattern

string CParameters_Base::m_Pattern
private

◆ m_Pattern_from

int CHsp_Base::m_Pattern_from
private

◆ m_Pattern_to

int CHsp_Base::m_Pattern_to
private

◆ m_Positive

int CHsp_Base::m_Positive
private

◆ m_Program

string CBlastOutput_Base::m_Program
private

◆ m_Qseq

string CHsp_Base::m_Qseq
private

Definition at line 926 of file Hsp_.hpp.

Referenced by CHsp_Base::GetQseq(), CHsp_Base::ResetQseq(), and CHsp_Base::SetQseq().

◆ m_Query_def [1/2]

string CBlastOutput_Base::m_Query_def
private

◆ m_Query_def [2/2]

string CIteration_Base::m_Query_def
private

◆ m_Query_frame

int CHsp_Base::m_Query_frame
private

◆ m_Query_from

int CHsp_Base::m_Query_from
private

◆ m_Query_ID [1/2]

string CBlastOutput_Base::m_Query_ID
private

◆ m_Query_ID [2/2]

string CIteration_Base::m_Query_ID
private

◆ m_Query_len [1/2]

int CBlastOutput_Base::m_Query_len
private

◆ m_Query_len [2/2]

int CIteration_Base::m_Query_len
private

◆ m_Query_seq

string CBlastOutput_Base::m_Query_seq
private

◆ m_Query_to

int CHsp_Base::m_Query_to
private

◆ m_Reference

string CBlastOutput_Base::m_Reference
private

◆ m_Sc_match

int CParameters_Base::m_Sc_match
private

◆ m_Sc_mismatch

int CParameters_Base::m_Sc_mismatch
private

◆ m_Score

double CHsp_Base::m_Score
private

Definition at line 911 of file Hsp_.hpp.

Referenced by CHsp_Base::GetScore(), CHsp_Base::ResetScore(), and CHsp_Base::SetScore().

◆ m_set_State [1/6]

Uint4 CBlastOutput_Base::m_set_State[1]
private

◆ m_set_State [2/6]

Uint4 CHit_Base::m_set_State
private

◆ m_set_State [3/6]

Uint4 CIteration_Base::m_set_State
private

◆ m_set_State [4/6]

Uint4 CParameters_Base::m_set_State
private

Definition at line 509 of file Parameters_.hpp.

Referenced by CParameters_Base::CParameters_Base(), CParameters_Base::IsSetBl2seq_mode(), CParameters_Base::IsSetCbs(), CParameters_Base::IsSetDb_gencode(), CParameters_Base::IsSetEntrez_query(), CParameters_Base::IsSetExpect(), CParameters_Base::IsSetFilter(), CParameters_Base::IsSetGap_extend(), CParameters_Base::IsSetGap_open(), CParameters_Base::IsSetInclude(), CParameters_Base::IsSetMatrix(), CParameters_Base::IsSetPattern(), CParameters_Base::IsSetQuery_gencode(), CParameters_Base::IsSetSc_match(), CParameters_Base::IsSetSc_mismatch(), CParameters_Base::ResetBl2seq_mode(), CParameters_Base::ResetCbs(), CParameters_Base::ResetDb_gencode(), CParameters_Base::ResetEntrez_query(), CParameters_Base::ResetExpect(), CParameters_Base::ResetFilter(), CParameters_Base::ResetGap_extend(), CParameters_Base::ResetGap_open(), CParameters_Base::ResetInclude(), CParameters_Base::ResetMatrix(), CParameters_Base::ResetPattern(), CParameters_Base::ResetQuery_gencode(), CParameters_Base::ResetSc_match(), CParameters_Base::ResetSc_mismatch(), CParameters_Base::SetBl2seq_mode(), CParameters_Base::SetCbs(), CParameters_Base::SetDb_gencode(), CParameters_Base::SetEntrez_query(), CParameters_Base::SetExpect(), CParameters_Base::SetFilter(), CParameters_Base::SetGap_extend(), CParameters_Base::SetGap_open(), CParameters_Base::SetInclude(), CParameters_Base::SetMatrix(), CParameters_Base::SetPattern(), CParameters_Base::SetQuery_gencode(), CParameters_Base::SetSc_match(), and CParameters_Base::SetSc_mismatch().

◆ m_set_State [5/6]

Uint4 CStatistics_Base::m_set_State
private

◆ m_set_State [6/6]

Uint4 CHsp_Base::m_set_State
private

Definition at line 908 of file Hsp_.hpp.

Referenced by CHsp_Base::CHsp_Base(), CHsp_Base::IsSetAlign_len(), CHsp_Base::IsSetBit_score(), CHsp_Base::IsSetDensity(), CHsp_Base::IsSetEvalue(), CHsp_Base::IsSetGaps(), CHsp_Base::IsSetHit_frame(), CHsp_Base::IsSetHit_from(), CHsp_Base::IsSetHit_strand(), CHsp_Base::IsSetHit_to(), CHsp_Base::IsSetHseq(), CHsp_Base::IsSetIdentity(), CHsp_Base::IsSetMidline(), CHsp_Base::IsSetNum(), CHsp_Base::IsSetPattern_from(), CHsp_Base::IsSetPattern_to(), CHsp_Base::IsSetPositive(), CHsp_Base::IsSetQseq(), CHsp_Base::IsSetQuery_frame(), CHsp_Base::IsSetQuery_from(), CHsp_Base::IsSetQuery_strand(), CHsp_Base::IsSetQuery_to(), CHsp_Base::IsSetScore(), CHsp_Base::ResetAlign_len(), CHsp_Base::ResetBit_score(), CHsp_Base::ResetDensity(), CHsp_Base::ResetEvalue(), CHsp_Base::ResetGaps(), CHsp_Base::ResetHit_frame(), CHsp_Base::ResetHit_from(), CHsp_Base::ResetHit_strand(), CHsp_Base::ResetHit_to(), CHsp_Base::ResetHseq(), CHsp_Base::ResetIdentity(), CHsp_Base::ResetMidline(), CHsp_Base::ResetNum(), CHsp_Base::ResetPattern_from(), CHsp_Base::ResetPattern_to(), CHsp_Base::ResetPositive(), CHsp_Base::ResetQseq(), CHsp_Base::ResetQuery_frame(), CHsp_Base::ResetQuery_from(), CHsp_Base::ResetQuery_strand(), CHsp_Base::ResetQuery_to(), CHsp_Base::ResetScore(), CHsp_Base::SetAlign_len(), CHsp_Base::SetBit_score(), CHsp_Base::SetDensity(), CHsp_Base::SetEvalue(), CHsp_Base::SetGaps(), CHsp_Base::SetHit_frame(), CHsp_Base::SetHit_from(), CHsp_Base::SetHit_strand(), CHsp_Base::SetHit_to(), CHsp_Base::SetHseq(), CHsp_Base::SetIdentity(), CHsp_Base::SetMidline(), CHsp_Base::SetNum(), CHsp_Base::SetPattern_from(), CHsp_Base::SetPattern_to(), CHsp_Base::SetPositive(), CHsp_Base::SetQseq(), CHsp_Base::SetQuery_frame(), CHsp_Base::SetQuery_from(), CHsp_Base::SetQuery_strand(), CHsp_Base::SetQuery_to(), and CHsp_Base::SetScore().

◆ m_Stat

CRef< TStat > CIteration_Base::m_Stat
private

◆ m_Version

string CBlastOutput_Base::m_Version
private
Modified on Wed Mar 27 11:20:16 2024 by modify_doxy.py rev. 669887