NCBI C++ ToolKit
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Classes | |
class | CBlastOutput |
CBlastOutput –. More... | |
class | CBlastOutput_Base |
CBlastOutput_Base –. More... | |
class | CHit |
A generalized representation of a pairwise alignment. More... | |
class | CHit_Base |
CHit_Base –. More... | |
class | CHsp |
CHsp –. More... | |
class | CHsp_Base |
CHsp_Base –. More... | |
class | CIteration |
CIteration –. More... | |
class | CIteration_Base |
CIteration_Base –. More... | |
class | CParameters |
CParameters –. More... | |
class | CParameters_Base |
CParameters_Base –. More... | |
class | CStatistics |
CStatistics –. More... | |
class | CStatistics_Base |
CStatistics_Base –. More... | |
Functions | |
CBlastOutput::CBlastOutput (void) | |
CBlastOutput::~CBlastOutput (void) | |
CBlastOutput::CBlastOutput (const CBlastOutput &value) | |
CBlastOutput & | CBlastOutput::operator= (const CBlastOutput &value) |
CBlastOutput_Base::CBlastOutput_Base (void) | |
virtual | CBlastOutput_Base::~CBlastOutput_Base (void) |
CBlastOutput_Base::DECLARE_INTERNAL_TYPE_INFO () | |
bool | CBlastOutput_Base::IsSetProgram (void) const |
BLAST program: blastp, tblastx etc. More... | |
bool | CBlastOutput_Base::CanGetProgram (void) const |
Check if it is safe to call GetProgram method. More... | |
void | CBlastOutput_Base::ResetProgram (void) |
Reset Program data member. More... | |
const TProgram & | CBlastOutput_Base::GetProgram (void) const |
Get the Program member data. More... | |
void | CBlastOutput_Base::SetProgram (const TProgram &value) |
Assign a value to Program data member. More... | |
void | CBlastOutput_Base::SetProgram (TProgram &&value) |
TProgram & | CBlastOutput_Base::SetProgram (void) |
Assign a value to Program data member. More... | |
bool | CBlastOutput_Base::IsSetVersion (void) const |
Program version Check if a value has been assigned to Version data member. More... | |
bool | CBlastOutput_Base::CanGetVersion (void) const |
Check if it is safe to call GetVersion method. More... | |
void | CBlastOutput_Base::ResetVersion (void) |
Reset Version data member. More... | |
const TVersion & | CBlastOutput_Base::GetVersion (void) const |
Get the Version member data. More... | |
void | CBlastOutput_Base::SetVersion (const TVersion &value) |
Assign a value to Version data member. More... | |
void | CBlastOutput_Base::SetVersion (TVersion &&value) |
TVersion & | CBlastOutput_Base::SetVersion (void) |
Assign a value to Version data member. More... | |
bool | CBlastOutput_Base::IsSetReference (void) const |
Steven, David, Tom and others Check if a value has been assigned to Reference data member. More... | |
bool | CBlastOutput_Base::CanGetReference (void) const |
Check if it is safe to call GetReference method. More... | |
void | CBlastOutput_Base::ResetReference (void) |
Reset Reference data member. More... | |
const TReference & | CBlastOutput_Base::GetReference (void) const |
Get the Reference member data. More... | |
void | CBlastOutput_Base::SetReference (const TReference &value) |
Assign a value to Reference data member. More... | |
void | CBlastOutput_Base::SetReference (TReference &&value) |
TReference & | CBlastOutput_Base::SetReference (void) |
Assign a value to Reference data member. More... | |
bool | CBlastOutput_Base::IsSetDb (void) const |
BLAST Database name Check if a value has been assigned to Db data member. More... | |
bool | CBlastOutput_Base::CanGetDb (void) const |
Check if it is safe to call GetDb method. More... | |
void | CBlastOutput_Base::ResetDb (void) |
Reset Db data member. More... | |
const TDb & | CBlastOutput_Base::GetDb (void) const |
Get the Db member data. More... | |
void | CBlastOutput_Base::SetDb (const TDb &value) |
Assign a value to Db data member. More... | |
void | CBlastOutput_Base::SetDb (TDb &&value) |
TDb & | CBlastOutput_Base::SetDb (void) |
Assign a value to Db data member. More... | |
bool | CBlastOutput_Base::IsSetQuery_ID (void) const |
SeqId of query Check if a value has been assigned to Query_ID data member. More... | |
bool | CBlastOutput_Base::CanGetQuery_ID (void) const |
Check if it is safe to call GetQuery_ID method. More... | |
void | CBlastOutput_Base::ResetQuery_ID (void) |
Reset Query_ID data member. More... | |
const TQuery_ID & | CBlastOutput_Base::GetQuery_ID (void) const |
Get the Query_ID member data. More... | |
void | CBlastOutput_Base::SetQuery_ID (const TQuery_ID &value) |
Assign a value to Query_ID data member. More... | |
void | CBlastOutput_Base::SetQuery_ID (TQuery_ID &&value) |
TQuery_ID & | CBlastOutput_Base::SetQuery_ID (void) |
Assign a value to Query_ID data member. More... | |
bool | CBlastOutput_Base::IsSetQuery_def (void) const |
Definition line of query Check if a value has been assigned to Query_def data member. More... | |
bool | CBlastOutput_Base::CanGetQuery_def (void) const |
Check if it is safe to call GetQuery_def method. More... | |
void | CBlastOutput_Base::ResetQuery_def (void) |
Reset Query_def data member. More... | |
const TQuery_def & | CBlastOutput_Base::GetQuery_def (void) const |
Get the Query_def member data. More... | |
void | CBlastOutput_Base::SetQuery_def (const TQuery_def &value) |
Assign a value to Query_def data member. More... | |
void | CBlastOutput_Base::SetQuery_def (TQuery_def &&value) |
TQuery_def & | CBlastOutput_Base::SetQuery_def (void) |
Assign a value to Query_def data member. More... | |
bool | CBlastOutput_Base::IsSetQuery_len (void) const |
length of query sequence Check if a value has been assigned to Query_len data member. More... | |
bool | CBlastOutput_Base::CanGetQuery_len (void) const |
Check if it is safe to call GetQuery_len method. More... | |
void | CBlastOutput_Base::ResetQuery_len (void) |
Reset Query_len data member. More... | |
TQuery_len | CBlastOutput_Base::GetQuery_len (void) const |
Get the Query_len member data. More... | |
void | CBlastOutput_Base::SetQuery_len (TQuery_len value) |
Assign a value to Query_len data member. More... | |
TQuery_len & | CBlastOutput_Base::SetQuery_len (void) |
Assign a value to Query_len data member. More... | |
bool | CBlastOutput_Base::IsSetQuery_seq (void) const |
query sequence itself Check if a value has been assigned to Query_seq data member. More... | |
bool | CBlastOutput_Base::CanGetQuery_seq (void) const |
Check if it is safe to call GetQuery_seq method. More... | |
void | CBlastOutput_Base::ResetQuery_seq (void) |
Reset Query_seq data member. More... | |
const TQuery_seq & | CBlastOutput_Base::GetQuery_seq (void) const |
Get the Query_seq member data. More... | |
void | CBlastOutput_Base::SetQuery_seq (const TQuery_seq &value) |
Assign a value to Query_seq data member. More... | |
void | CBlastOutput_Base::SetQuery_seq (TQuery_seq &&value) |
TQuery_seq & | CBlastOutput_Base::SetQuery_seq (void) |
Assign a value to Query_seq data member. More... | |
bool | CBlastOutput_Base::IsSetParam (void) const |
search parameters Check if a value has been assigned to Param data member. More... | |
bool | CBlastOutput_Base::CanGetParam (void) const |
Check if it is safe to call GetParam method. More... | |
void | CBlastOutput_Base::ResetParam (void) |
Reset Param data member. More... | |
const TParam & | CBlastOutput_Base::GetParam (void) const |
Get the Param member data. More... | |
void | CBlastOutput_Base::SetParam (TParam &value) |
Assign a value to Param data member. More... | |
TParam & | CBlastOutput_Base::SetParam (void) |
Assign a value to Param data member. More... | |
bool | CBlastOutput_Base::IsSetIterations (void) const |
Check if a value has been assigned to Iterations data member. More... | |
bool | CBlastOutput_Base::CanGetIterations (void) const |
Check if it is safe to call GetIterations method. More... | |
void | CBlastOutput_Base::ResetIterations (void) |
Reset Iterations data member. More... | |
const TIterations & | CBlastOutput_Base::GetIterations (void) const |
Get the Iterations member data. More... | |
TIterations & | CBlastOutput_Base::SetIterations (void) |
Assign a value to Iterations data member. More... | |
bool | CBlastOutput_Base::IsSetMbstat (void) const |
Mega BLAST search statistics Check if a value has been assigned to Mbstat data member. More... | |
bool | CBlastOutput_Base::CanGetMbstat (void) const |
Check if it is safe to call GetMbstat method. More... | |
void | CBlastOutput_Base::ResetMbstat (void) |
Reset Mbstat data member. More... | |
const TMbstat & | CBlastOutput_Base::GetMbstat (void) const |
Get the Mbstat member data. More... | |
void | CBlastOutput_Base::SetMbstat (TMbstat &value) |
Assign a value to Mbstat data member. More... | |
TMbstat & | CBlastOutput_Base::SetMbstat (void) |
Assign a value to Mbstat data member. More... | |
virtual void | CBlastOutput_Base::Reset (void) |
Reset the whole object. More... | |
CBlastOutput_Base::CBlastOutput_Base (const CBlastOutput_Base &) | |
CBlastOutput_Base & | CBlastOutput_Base::operator= (const CBlastOutput_Base &) |
CHit::CHit (void) | |
CHit::~CHit (void) | |
CHit::CHit (const CHit &value) | |
CHit & | CHit::operator= (const CHit &value) |
CHit_Base::CHit_Base (void) | |
virtual | CHit_Base::~CHit_Base (void) |
CHit_Base::DECLARE_INTERNAL_TYPE_INFO () | |
bool | CHit_Base::IsSetNum (void) const |
hit number Check if a value has been assigned to Num data member. More... | |
bool | CHit_Base::CanGetNum (void) const |
Check if it is safe to call GetNum method. More... | |
void | CHit_Base::ResetNum (void) |
Reset Num data member. More... | |
TNum | CHit_Base::GetNum (void) const |
Get the Num member data. More... | |
void | CHit_Base::SetNum (TNum value) |
Assign a value to Num data member. More... | |
TNum & | CHit_Base::SetNum (void) |
Assign a value to Num data member. More... | |
bool | CHit_Base::IsSetId (void) const |
SeqId of subject Check if a value has been assigned to Id data member. More... | |
bool | CHit_Base::CanGetId (void) const |
Check if it is safe to call GetId method. More... | |
void | CHit_Base::ResetId (void) |
Reset Id data member. More... | |
const TId & | CHit_Base::GetId (void) const |
Get the Id member data. More... | |
void | CHit_Base::SetId (const TId &value) |
Assign a value to Id data member. More... | |
void | CHit_Base::SetId (TId &&value) |
TId & | CHit_Base::SetId (void) |
Assign a value to Id data member. More... | |
bool | CHit_Base::IsSetDef (void) const |
definition line of subject Check if a value has been assigned to Def data member. More... | |
bool | CHit_Base::CanGetDef (void) const |
Check if it is safe to call GetDef method. More... | |
void | CHit_Base::ResetDef (void) |
Reset Def data member. More... | |
const TDef & | CHit_Base::GetDef (void) const |
Get the Def member data. More... | |
void | CHit_Base::SetDef (const TDef &value) |
Assign a value to Def data member. More... | |
void | CHit_Base::SetDef (TDef &&value) |
TDef & | CHit_Base::SetDef (void) |
Assign a value to Def data member. More... | |
bool | CHit_Base::IsSetAccession (void) const |
accession Check if a value has been assigned to Accession data member. More... | |
bool | CHit_Base::CanGetAccession (void) const |
Check if it is safe to call GetAccession method. More... | |
void | CHit_Base::ResetAccession (void) |
Reset Accession data member. More... | |
const TAccession & | CHit_Base::GetAccession (void) const |
Get the Accession member data. More... | |
void | CHit_Base::SetAccession (const TAccession &value) |
Assign a value to Accession data member. More... | |
void | CHit_Base::SetAccession (TAccession &&value) |
TAccession & | CHit_Base::SetAccession (void) |
Assign a value to Accession data member. More... | |
bool | CHit_Base::IsSetLen (void) const |
length of subject Check if a value has been assigned to Len data member. More... | |
bool | CHit_Base::CanGetLen (void) const |
Check if it is safe to call GetLen method. More... | |
void | CHit_Base::ResetLen (void) |
Reset Len data member. More... | |
TLen | CHit_Base::GetLen (void) const |
Get the Len member data. More... | |
void | CHit_Base::SetLen (TLen value) |
Assign a value to Len data member. More... | |
TLen & | CHit_Base::SetLen (void) |
Assign a value to Len data member. More... | |
bool | CHit_Base::IsSetHsps (void) const |
all HSP regions for the given subject Check if a value has been assigned to Hsps data member. More... | |
bool | CHit_Base::CanGetHsps (void) const |
Check if it is safe to call GetHsps method. More... | |
void | CHit_Base::ResetHsps (void) |
Reset Hsps data member. More... | |
const THsps & | CHit_Base::GetHsps (void) const |
Get the Hsps member data. More... | |
THsps & | CHit_Base::SetHsps (void) |
Assign a value to Hsps data member. More... | |
virtual void | CHit_Base::Reset (void) |
Reset the whole object. More... | |
CHit_Base::CHit_Base (const CHit_Base &) | |
CHit_Base & | CHit_Base::operator= (const CHit_Base &) |
CHsp::CHsp (void) | |
CHsp::~CHsp (void) | |
CHsp::CHsp (const CHsp &value) | |
CHsp & | CHsp::operator= (const CHsp &value) |
CHsp_Base::CHsp_Base (void) | |
virtual | CHsp_Base::~CHsp_Base (void) |
CHsp_Base::DECLARE_INTERNAL_TYPE_INFO () | |
bool | CHsp_Base::IsSetNum (void) const |
HSP number Check if a value has been assigned to Num data member. More... | |
bool | CHsp_Base::CanGetNum (void) const |
Check if it is safe to call GetNum method. More... | |
void | CHsp_Base::ResetNum (void) |
Reset Num data member. More... | |
TNum | CHsp_Base::GetNum (void) const |
Get the Num member data. More... | |
void | CHsp_Base::SetNum (TNum value) |
Assign a value to Num data member. More... | |
TNum & | CHsp_Base::SetNum (void) |
Assign a value to Num data member. More... | |
bool | CHsp_Base::IsSetBit_score (void) const |
score (in bits) of HSP Check if a value has been assigned to Bit_score data member. More... | |
bool | CHsp_Base::CanGetBit_score (void) const |
Check if it is safe to call GetBit_score method. More... | |
void | CHsp_Base::ResetBit_score (void) |
Reset Bit_score data member. More... | |
TBit_score | CHsp_Base::GetBit_score (void) const |
Get the Bit_score member data. More... | |
void | CHsp_Base::SetBit_score (TBit_score value) |
Assign a value to Bit_score data member. More... | |
TBit_score & | CHsp_Base::SetBit_score (void) |
Assign a value to Bit_score data member. More... | |
bool | CHsp_Base::IsSetScore (void) const |
score of HSP Check if a value has been assigned to Score data member. More... | |
bool | CHsp_Base::CanGetScore (void) const |
Check if it is safe to call GetScore method. More... | |
void | CHsp_Base::ResetScore (void) |
Reset Score data member. More... | |
TScore | CHsp_Base::GetScore (void) const |
Get the Score member data. More... | |
void | CHsp_Base::SetScore (TScore value) |
Assign a value to Score data member. More... | |
TScore & | CHsp_Base::SetScore (void) |
Assign a value to Score data member. More... | |
bool | CHsp_Base::IsSetEvalue (void) const |
e-value of HSP Check if a value has been assigned to Evalue data member. More... | |
bool | CHsp_Base::CanGetEvalue (void) const |
Check if it is safe to call GetEvalue method. More... | |
void | CHsp_Base::ResetEvalue (void) |
Reset Evalue data member. More... | |
TEvalue | CHsp_Base::GetEvalue (void) const |
Get the Evalue member data. More... | |
void | CHsp_Base::SetEvalue (TEvalue value) |
Assign a value to Evalue data member. More... | |
TEvalue & | CHsp_Base::SetEvalue (void) |
Assign a value to Evalue data member. More... | |
bool | CHsp_Base::IsSetQuery_from (void) const |
start of HSP in query Check if a value has been assigned to Query_from data member. More... | |
bool | CHsp_Base::CanGetQuery_from (void) const |
Check if it is safe to call GetQuery_from method. More... | |
void | CHsp_Base::ResetQuery_from (void) |
Reset Query_from data member. More... | |
TQuery_from | CHsp_Base::GetQuery_from (void) const |
Get the Query_from member data. More... | |
void | CHsp_Base::SetQuery_from (TQuery_from value) |
Assign a value to Query_from data member. More... | |
TQuery_from & | CHsp_Base::SetQuery_from (void) |
Assign a value to Query_from data member. More... | |
bool | CHsp_Base::IsSetQuery_to (void) const |
end of HSP Check if a value has been assigned to Query_to data member. More... | |
bool | CHsp_Base::CanGetQuery_to (void) const |
Check if it is safe to call GetQuery_to method. More... | |
void | CHsp_Base::ResetQuery_to (void) |
Reset Query_to data member. More... | |
TQuery_to | CHsp_Base::GetQuery_to (void) const |
Get the Query_to member data. More... | |
void | CHsp_Base::SetQuery_to (TQuery_to value) |
Assign a value to Query_to data member. More... | |
TQuery_to & | CHsp_Base::SetQuery_to (void) |
Assign a value to Query_to data member. More... | |
bool | CHsp_Base::IsSetHit_from (void) const |
start of HSP in subject Check if a value has been assigned to Hit_from data member. More... | |
bool | CHsp_Base::CanGetHit_from (void) const |
Check if it is safe to call GetHit_from method. More... | |
void | CHsp_Base::ResetHit_from (void) |
Reset Hit_from data member. More... | |
THit_from | CHsp_Base::GetHit_from (void) const |
Get the Hit_from member data. More... | |
void | CHsp_Base::SetHit_from (THit_from value) |
Assign a value to Hit_from data member. More... | |
THit_from & | CHsp_Base::SetHit_from (void) |
Assign a value to Hit_from data member. More... | |
bool | CHsp_Base::IsSetHit_to (void) const |
end of HSP in subject Check if a value has been assigned to Hit_to data member. More... | |
bool | CHsp_Base::CanGetHit_to (void) const |
Check if it is safe to call GetHit_to method. More... | |
void | CHsp_Base::ResetHit_to (void) |
Reset Hit_to data member. More... | |
THit_to | CHsp_Base::GetHit_to (void) const |
Get the Hit_to member data. More... | |
void | CHsp_Base::SetHit_to (THit_to value) |
Assign a value to Hit_to data member. More... | |
THit_to & | CHsp_Base::SetHit_to (void) |
Assign a value to Hit_to data member. More... | |
bool | CHsp_Base::IsSetPattern_from (void) const |
start of PHI-BLAST pattern Check if a value has been assigned to Pattern_from data member. More... | |
bool | CHsp_Base::CanGetPattern_from (void) const |
Check if it is safe to call GetPattern_from method. More... | |
void | CHsp_Base::ResetPattern_from (void) |
Reset Pattern_from data member. More... | |
TPattern_from | CHsp_Base::GetPattern_from (void) const |
Get the Pattern_from member data. More... | |
void | CHsp_Base::SetPattern_from (TPattern_from value) |
Assign a value to Pattern_from data member. More... | |
TPattern_from & | CHsp_Base::SetPattern_from (void) |
Assign a value to Pattern_from data member. More... | |
bool | CHsp_Base::IsSetPattern_to (void) const |
end of PHI-BLAST pattern Check if a value has been assigned to Pattern_to data member. More... | |
bool | CHsp_Base::CanGetPattern_to (void) const |
Check if it is safe to call GetPattern_to method. More... | |
void | CHsp_Base::ResetPattern_to (void) |
Reset Pattern_to data member. More... | |
TPattern_to | CHsp_Base::GetPattern_to (void) const |
Get the Pattern_to member data. More... | |
void | CHsp_Base::SetPattern_to (TPattern_to value) |
Assign a value to Pattern_to data member. More... | |
TPattern_to & | CHsp_Base::SetPattern_to (void) |
Assign a value to Pattern_to data member. More... | |
bool | CHsp_Base::IsSetQuery_frame (void) const |
translation frame of query Check if a value has been assigned to Query_frame data member. More... | |
bool | CHsp_Base::CanGetQuery_frame (void) const |
Check if it is safe to call GetQuery_frame method. More... | |
void | CHsp_Base::ResetQuery_frame (void) |
Reset Query_frame data member. More... | |
TQuery_frame | CHsp_Base::GetQuery_frame (void) const |
Get the Query_frame member data. More... | |
void | CHsp_Base::SetQuery_frame (TQuery_frame value) |
Assign a value to Query_frame data member. More... | |
TQuery_frame & | CHsp_Base::SetQuery_frame (void) |
Assign a value to Query_frame data member. More... | |
bool | CHsp_Base::IsSetHit_frame (void) const |
translation frame of subject Check if a value has been assigned to Hit_frame data member. More... | |
bool | CHsp_Base::CanGetHit_frame (void) const |
Check if it is safe to call GetHit_frame method. More... | |
void | CHsp_Base::ResetHit_frame (void) |
Reset Hit_frame data member. More... | |
THit_frame | CHsp_Base::GetHit_frame (void) const |
Get the Hit_frame member data. More... | |
void | CHsp_Base::SetHit_frame (THit_frame value) |
Assign a value to Hit_frame data member. More... | |
THit_frame & | CHsp_Base::SetHit_frame (void) |
Assign a value to Hit_frame data member. More... | |
bool | CHsp_Base::IsSetIdentity (void) const |
number of identities in HSP Check if a value has been assigned to Identity data member. More... | |
bool | CHsp_Base::CanGetIdentity (void) const |
Check if it is safe to call GetIdentity method. More... | |
void | CHsp_Base::ResetIdentity (void) |
Reset Identity data member. More... | |
TIdentity | CHsp_Base::GetIdentity (void) const |
Get the Identity member data. More... | |
void | CHsp_Base::SetIdentity (TIdentity value) |
Assign a value to Identity data member. More... | |
TIdentity & | CHsp_Base::SetIdentity (void) |
Assign a value to Identity data member. More... | |
bool | CHsp_Base::IsSetPositive (void) const |
number of positives in HSP Check if a value has been assigned to Positive data member. More... | |
bool | CHsp_Base::CanGetPositive (void) const |
Check if it is safe to call GetPositive method. More... | |
void | CHsp_Base::ResetPositive (void) |
Reset Positive data member. More... | |
TPositive | CHsp_Base::GetPositive (void) const |
Get the Positive member data. More... | |
void | CHsp_Base::SetPositive (TPositive value) |
Assign a value to Positive data member. More... | |
TPositive & | CHsp_Base::SetPositive (void) |
Assign a value to Positive data member. More... | |
bool | CHsp_Base::IsSetGaps (void) const |
number of gaps in HSP Check if a value has been assigned to Gaps data member. More... | |
bool | CHsp_Base::CanGetGaps (void) const |
Check if it is safe to call GetGaps method. More... | |
void | CHsp_Base::ResetGaps (void) |
Reset Gaps data member. More... | |
TGaps | CHsp_Base::GetGaps (void) const |
Get the Gaps member data. More... | |
void | CHsp_Base::SetGaps (TGaps value) |
Assign a value to Gaps data member. More... | |
TGaps & | CHsp_Base::SetGaps (void) |
Assign a value to Gaps data member. More... | |
bool | CHsp_Base::IsSetAlign_len (void) const |
length of the alignment used Check if a value has been assigned to Align_len data member. More... | |
bool | CHsp_Base::CanGetAlign_len (void) const |
Check if it is safe to call GetAlign_len method. More... | |
void | CHsp_Base::ResetAlign_len (void) |
Reset Align_len data member. More... | |
TAlign_len | CHsp_Base::GetAlign_len (void) const |
Get the Align_len member data. More... | |
void | CHsp_Base::SetAlign_len (TAlign_len value) |
Assign a value to Align_len data member. More... | |
TAlign_len & | CHsp_Base::SetAlign_len (void) |
Assign a value to Align_len data member. More... | |
bool | CHsp_Base::IsSetDensity (void) const |
score density Check if a value has been assigned to Density data member. More... | |
bool | CHsp_Base::CanGetDensity (void) const |
Check if it is safe to call GetDensity method. More... | |
void | CHsp_Base::ResetDensity (void) |
Reset Density data member. More... | |
TDensity | CHsp_Base::GetDensity (void) const |
Get the Density member data. More... | |
void | CHsp_Base::SetDensity (TDensity value) |
Assign a value to Density data member. More... | |
TDensity & | CHsp_Base::SetDensity (void) |
Assign a value to Density data member. More... | |
bool | CHsp_Base::IsSetQseq (void) const |
alignment string for the query (with gaps) Check if a value has been assigned to Qseq data member. More... | |
bool | CHsp_Base::CanGetQseq (void) const |
Check if it is safe to call GetQseq method. More... | |
void | CHsp_Base::ResetQseq (void) |
Reset Qseq data member. More... | |
const TQseq & | CHsp_Base::GetQseq (void) const |
Get the Qseq member data. More... | |
void | CHsp_Base::SetQseq (const TQseq &value) |
Assign a value to Qseq data member. More... | |
void | CHsp_Base::SetQseq (TQseq &&value) |
TQseq & | CHsp_Base::SetQseq (void) |
Assign a value to Qseq data member. More... | |
bool | CHsp_Base::IsSetHseq (void) const |
alignment string for subject (with gaps) Check if a value has been assigned to Hseq data member. More... | |
bool | CHsp_Base::CanGetHseq (void) const |
Check if it is safe to call GetHseq method. More... | |
void | CHsp_Base::ResetHseq (void) |
Reset Hseq data member. More... | |
const THseq & | CHsp_Base::GetHseq (void) const |
Get the Hseq member data. More... | |
void | CHsp_Base::SetHseq (const THseq &value) |
Assign a value to Hseq data member. More... | |
void | CHsp_Base::SetHseq (THseq &&value) |
THseq & | CHsp_Base::SetHseq (void) |
Assign a value to Hseq data member. More... | |
bool | CHsp_Base::IsSetMidline (void) const |
formating middle line Check if a value has been assigned to Midline data member. More... | |
bool | CHsp_Base::CanGetMidline (void) const |
Check if it is safe to call GetMidline method. More... | |
void | CHsp_Base::ResetMidline (void) |
Reset Midline data member. More... | |
const TMidline & | CHsp_Base::GetMidline (void) const |
Get the Midline member data. More... | |
void | CHsp_Base::SetMidline (const TMidline &value) |
Assign a value to Midline data member. More... | |
void | CHsp_Base::SetMidline (TMidline &&value) |
TMidline & | CHsp_Base::SetMidline (void) |
Assign a value to Midline data member. More... | |
virtual void | CHsp_Base::Reset (void) |
Reset the whole object. More... | |
CHsp_Base::CHsp_Base (const CHsp_Base &) | |
CHsp_Base & | CHsp_Base::operator= (const CHsp_Base &) |
CIteration::CIteration (void) | |
CIteration::~CIteration (void) | |
CIteration::CIteration (const CIteration &value) | |
CIteration & | CIteration::operator= (const CIteration &value) |
CIteration_Base::CIteration_Base (void) | |
virtual | CIteration_Base::~CIteration_Base (void) |
CIteration_Base::DECLARE_INTERNAL_TYPE_INFO () | |
bool | CIteration_Base::IsSetIter_num (void) const |
iteration number Check if a value has been assigned to Iter_num data member. More... | |
bool | CIteration_Base::CanGetIter_num (void) const |
Check if it is safe to call GetIter_num method. More... | |
void | CIteration_Base::ResetIter_num (void) |
Reset Iter_num data member. More... | |
TIter_num | CIteration_Base::GetIter_num (void) const |
Get the Iter_num member data. More... | |
void | CIteration_Base::SetIter_num (TIter_num value) |
Assign a value to Iter_num data member. More... | |
TIter_num & | CIteration_Base::SetIter_num (void) |
Assign a value to Iter_num data member. More... | |
bool | CIteration_Base::IsSetQuery_ID (void) const |
SeqId of query Check if a value has been assigned to Query_ID data member. More... | |
bool | CIteration_Base::CanGetQuery_ID (void) const |
Check if it is safe to call GetQuery_ID method. More... | |
void | CIteration_Base::ResetQuery_ID (void) |
Reset Query_ID data member. More... | |
const TQuery_ID & | CIteration_Base::GetQuery_ID (void) const |
Get the Query_ID member data. More... | |
void | CIteration_Base::SetQuery_ID (const TQuery_ID &value) |
Assign a value to Query_ID data member. More... | |
void | CIteration_Base::SetQuery_ID (TQuery_ID &&value) |
TQuery_ID & | CIteration_Base::SetQuery_ID (void) |
Assign a value to Query_ID data member. More... | |
bool | CIteration_Base::IsSetQuery_def (void) const |
Definition line of query Check if a value has been assigned to Query_def data member. More... | |
bool | CIteration_Base::CanGetQuery_def (void) const |
Check if it is safe to call GetQuery_def method. More... | |
void | CIteration_Base::ResetQuery_def (void) |
Reset Query_def data member. More... | |
const TQuery_def & | CIteration_Base::GetQuery_def (void) const |
Get the Query_def member data. More... | |
void | CIteration_Base::SetQuery_def (const TQuery_def &value) |
Assign a value to Query_def data member. More... | |
void | CIteration_Base::SetQuery_def (TQuery_def &&value) |
TQuery_def & | CIteration_Base::SetQuery_def (void) |
Assign a value to Query_def data member. More... | |
bool | CIteration_Base::IsSetQuery_len (void) const |
length of query sequence Check if a value has been assigned to Query_len data member. More... | |
bool | CIteration_Base::CanGetQuery_len (void) const |
Check if it is safe to call GetQuery_len method. More... | |
void | CIteration_Base::ResetQuery_len (void) |
Reset Query_len data member. More... | |
TQuery_len | CIteration_Base::GetQuery_len (void) const |
Get the Query_len member data. More... | |
void | CIteration_Base::SetQuery_len (TQuery_len value) |
Assign a value to Query_len data member. More... | |
TQuery_len & | CIteration_Base::SetQuery_len (void) |
Assign a value to Query_len data member. More... | |
bool | CIteration_Base::IsSetHits (void) const |
Hits one for every db sequence Check if a value has been assigned to Hits data member. More... | |
bool | CIteration_Base::CanGetHits (void) const |
Check if it is safe to call GetHits method. More... | |
void | CIteration_Base::ResetHits (void) |
Reset Hits data member. More... | |
const THits & | CIteration_Base::GetHits (void) const |
Get the Hits member data. More... | |
THits & | CIteration_Base::SetHits (void) |
Assign a value to Hits data member. More... | |
bool | CIteration_Base::IsSetStat (void) const |
search statistics Check if a value has been assigned to Stat data member. More... | |
bool | CIteration_Base::CanGetStat (void) const |
Check if it is safe to call GetStat method. More... | |
void | CIteration_Base::ResetStat (void) |
Reset Stat data member. More... | |
const TStat & | CIteration_Base::GetStat (void) const |
Get the Stat member data. More... | |
void | CIteration_Base::SetStat (TStat &value) |
Assign a value to Stat data member. More... | |
TStat & | CIteration_Base::SetStat (void) |
Assign a value to Stat data member. More... | |
bool | CIteration_Base::IsSetMessage (void) const |
Some (error?) information Check if a value has been assigned to Message data member. More... | |
bool | CIteration_Base::CanGetMessage (void) const |
Check if it is safe to call GetMessage method. More... | |
void | CIteration_Base::ResetMessage (void) |
Reset Message data member. More... | |
const TMessage & | CIteration_Base::GetMessage (void) const |
Get the Message member data. More... | |
void | CIteration_Base::SetMessage (const TMessage &value) |
Assign a value to Message data member. More... | |
void | CIteration_Base::SetMessage (TMessage &&value) |
TMessage & | CIteration_Base::SetMessage (void) |
Assign a value to Message data member. More... | |
virtual void | CIteration_Base::Reset (void) |
Reset the whole object. More... | |
CIteration_Base::CIteration_Base (const CIteration_Base &) | |
CIteration_Base & | CIteration_Base::operator= (const CIteration_Base &) |
CParameters::CParameters (void) | |
CParameters::~CParameters (void) | |
CParameters::CParameters (const CParameters &value) | |
CParameters & | CParameters::operator= (const CParameters &value) |
CParameters_Base::CParameters_Base (void) | |
virtual | CParameters_Base::~CParameters_Base (void) |
CParameters_Base::DECLARE_INTERNAL_TYPE_INFO () | |
bool | CParameters_Base::IsSetMatrix (void) const |
Matrix used (-M) Check if a value has been assigned to Matrix data member. More... | |
bool | CParameters_Base::CanGetMatrix (void) const |
Check if it is safe to call GetMatrix method. More... | |
void | CParameters_Base::ResetMatrix (void) |
Reset Matrix data member. More... | |
const TMatrix & | CParameters_Base::GetMatrix (void) const |
Get the Matrix member data. More... | |
void | CParameters_Base::SetMatrix (const TMatrix &value) |
Assign a value to Matrix data member. More... | |
void | CParameters_Base::SetMatrix (TMatrix &&value) |
TMatrix & | CParameters_Base::SetMatrix (void) |
Assign a value to Matrix data member. More... | |
bool | CParameters_Base::IsSetExpect (void) const |
Expectation threshold (-e) Check if a value has been assigned to Expect data member. More... | |
bool | CParameters_Base::CanGetExpect (void) const |
Check if it is safe to call GetExpect method. More... | |
void | CParameters_Base::ResetExpect (void) |
Reset Expect data member. More... | |
TExpect | CParameters_Base::GetExpect (void) const |
Get the Expect member data. More... | |
void | CParameters_Base::SetExpect (TExpect value) |
Assign a value to Expect data member. More... | |
TExpect & | CParameters_Base::SetExpect (void) |
Assign a value to Expect data member. More... | |
bool | CParameters_Base::IsSetInclude (void) const |
Inclusion threshold (-h) Check if a value has been assigned to Include data member. More... | |
bool | CParameters_Base::CanGetInclude (void) const |
Check if it is safe to call GetInclude method. More... | |
void | CParameters_Base::ResetInclude (void) |
Reset Include data member. More... | |
TInclude | CParameters_Base::GetInclude (void) const |
Get the Include member data. More... | |
void | CParameters_Base::SetInclude (TInclude value) |
Assign a value to Include data member. More... | |
TInclude & | CParameters_Base::SetInclude (void) |
Assign a value to Include data member. More... | |
bool | CParameters_Base::IsSetSc_match (void) const |
match score for NT (-r) Check if a value has been assigned to Sc_match data member. More... | |
bool | CParameters_Base::CanGetSc_match (void) const |
Check if it is safe to call GetSc_match method. More... | |
void | CParameters_Base::ResetSc_match (void) |
Reset Sc_match data member. More... | |
TSc_match | CParameters_Base::GetSc_match (void) const |
Get the Sc_match member data. More... | |
void | CParameters_Base::SetSc_match (TSc_match value) |
Assign a value to Sc_match data member. More... | |
TSc_match & | CParameters_Base::SetSc_match (void) |
Assign a value to Sc_match data member. More... | |
bool | CParameters_Base::IsSetSc_mismatch (void) const |
mismatch score for NT (-q) Check if a value has been assigned to Sc_mismatch data member. More... | |
bool | CParameters_Base::CanGetSc_mismatch (void) const |
Check if it is safe to call GetSc_mismatch method. More... | |
void | CParameters_Base::ResetSc_mismatch (void) |
Reset Sc_mismatch data member. More... | |
TSc_mismatch | CParameters_Base::GetSc_mismatch (void) const |
Get the Sc_mismatch member data. More... | |
void | CParameters_Base::SetSc_mismatch (TSc_mismatch value) |
Assign a value to Sc_mismatch data member. More... | |
TSc_mismatch & | CParameters_Base::SetSc_mismatch (void) |
Assign a value to Sc_mismatch data member. More... | |
bool | CParameters_Base::IsSetGap_open (void) const |
Gap opening cost (-G) Check if a value has been assigned to Gap_open data member. More... | |
bool | CParameters_Base::CanGetGap_open (void) const |
Check if it is safe to call GetGap_open method. More... | |
void | CParameters_Base::ResetGap_open (void) |
Reset Gap_open data member. More... | |
TGap_open | CParameters_Base::GetGap_open (void) const |
Get the Gap_open member data. More... | |
void | CParameters_Base::SetGap_open (TGap_open value) |
Assign a value to Gap_open data member. More... | |
TGap_open & | CParameters_Base::SetGap_open (void) |
Assign a value to Gap_open data member. More... | |
bool | CParameters_Base::IsSetGap_extend (void) const |
Gap extension cost (-E) Check if a value has been assigned to Gap_extend data member. More... | |
bool | CParameters_Base::CanGetGap_extend (void) const |
Check if it is safe to call GetGap_extend method. More... | |
void | CParameters_Base::ResetGap_extend (void) |
Reset Gap_extend data member. More... | |
TGap_extend | CParameters_Base::GetGap_extend (void) const |
Get the Gap_extend member data. More... | |
void | CParameters_Base::SetGap_extend (TGap_extend value) |
Assign a value to Gap_extend data member. More... | |
TGap_extend & | CParameters_Base::SetGap_extend (void) |
Assign a value to Gap_extend data member. More... | |
bool | CParameters_Base::IsSetFilter (void) const |
Filtering options (-F) Check if a value has been assigned to Filter data member. More... | |
bool | CParameters_Base::CanGetFilter (void) const |
Check if it is safe to call GetFilter method. More... | |
void | CParameters_Base::ResetFilter (void) |
Reset Filter data member. More... | |
const TFilter & | CParameters_Base::GetFilter (void) const |
Get the Filter member data. More... | |
void | CParameters_Base::SetFilter (const TFilter &value) |
Assign a value to Filter data member. More... | |
void | CParameters_Base::SetFilter (TFilter &&value) |
TFilter & | CParameters_Base::SetFilter (void) |
Assign a value to Filter data member. More... | |
bool | CParameters_Base::IsSetPattern (void) const |
PHI-BLAST pattern Check if a value has been assigned to Pattern data member. More... | |
bool | CParameters_Base::CanGetPattern (void) const |
Check if it is safe to call GetPattern method. More... | |
void | CParameters_Base::ResetPattern (void) |
Reset Pattern data member. More... | |
const TPattern & | CParameters_Base::GetPattern (void) const |
Get the Pattern member data. More... | |
void | CParameters_Base::SetPattern (const TPattern &value) |
Assign a value to Pattern data member. More... | |
void | CParameters_Base::SetPattern (TPattern &&value) |
TPattern & | CParameters_Base::SetPattern (void) |
Assign a value to Pattern data member. More... | |
bool | CParameters_Base::IsSetEntrez_query (void) const |
Limit of request to Entrez query Check if a value has been assigned to Entrez_query data member. More... | |
bool | CParameters_Base::CanGetEntrez_query (void) const |
Check if it is safe to call GetEntrez_query method. More... | |
void | CParameters_Base::ResetEntrez_query (void) |
Reset Entrez_query data member. More... | |
const TEntrez_query & | CParameters_Base::GetEntrez_query (void) const |
Get the Entrez_query member data. More... | |
void | CParameters_Base::SetEntrez_query (const TEntrez_query &value) |
Assign a value to Entrez_query data member. More... | |
void | CParameters_Base::SetEntrez_query (TEntrez_query &&value) |
TEntrez_query & | CParameters_Base::SetEntrez_query (void) |
Assign a value to Entrez_query data member. More... | |
virtual void | CParameters_Base::Reset (void) |
Reset the whole object. More... | |
CParameters_Base::CParameters_Base (const CParameters_Base &) | |
CParameters_Base & | CParameters_Base::operator= (const CParameters_Base &) |
CStatistics::CStatistics (void) | |
CStatistics::~CStatistics (void) | |
CStatistics::CStatistics (const CStatistics &value) | |
CStatistics & | CStatistics::operator= (const CStatistics &value) |
CStatistics_Base::CStatistics_Base (void) | |
virtual | CStatistics_Base::~CStatistics_Base (void) |
CStatistics_Base::DECLARE_INTERNAL_TYPE_INFO () | |
bool | CStatistics_Base::IsSetDb_num (void) const |
Number of sequences in BLAST db Check if a value has been assigned to Db_num data member. More... | |
bool | CStatistics_Base::CanGetDb_num (void) const |
Check if it is safe to call GetDb_num method. More... | |
void | CStatistics_Base::ResetDb_num (void) |
Reset Db_num data member. More... | |
TDb_num | CStatistics_Base::GetDb_num (void) const |
Get the Db_num member data. More... | |
void | CStatistics_Base::SetDb_num (TDb_num value) |
Assign a value to Db_num data member. More... | |
TDb_num & | CStatistics_Base::SetDb_num (void) |
Assign a value to Db_num data member. More... | |
bool | CStatistics_Base::IsSetDb_len (void) const |
Length of BLAST db Check if a value has been assigned to Db_len data member. More... | |
bool | CStatistics_Base::CanGetDb_len (void) const |
Check if it is safe to call GetDb_len method. More... | |
void | CStatistics_Base::ResetDb_len (void) |
Reset Db_len data member. More... | |
TDb_len | CStatistics_Base::GetDb_len (void) const |
Get the Db_len member data. More... | |
void | CStatistics_Base::SetDb_len (TDb_len value) |
Assign a value to Db_len data member. More... | |
TDb_len & | CStatistics_Base::SetDb_len (void) |
Assign a value to Db_len data member. More... | |
bool | CStatistics_Base::IsSetHsp_len (void) const |
Effective HSP length Check if a value has been assigned to Hsp_len data member. More... | |
bool | CStatistics_Base::CanGetHsp_len (void) const |
Check if it is safe to call GetHsp_len method. More... | |
void | CStatistics_Base::ResetHsp_len (void) |
Reset Hsp_len data member. More... | |
THsp_len | CStatistics_Base::GetHsp_len (void) const |
Get the Hsp_len member data. More... | |
void | CStatistics_Base::SetHsp_len (THsp_len value) |
Assign a value to Hsp_len data member. More... | |
THsp_len & | CStatistics_Base::SetHsp_len (void) |
Assign a value to Hsp_len data member. More... | |
bool | CStatistics_Base::IsSetEff_space (void) const |
Effective search space Check if a value has been assigned to Eff_space data member. More... | |
bool | CStatistics_Base::CanGetEff_space (void) const |
Check if it is safe to call GetEff_space method. More... | |
void | CStatistics_Base::ResetEff_space (void) |
Reset Eff_space data member. More... | |
TEff_space | CStatistics_Base::GetEff_space (void) const |
Get the Eff_space member data. More... | |
void | CStatistics_Base::SetEff_space (TEff_space value) |
Assign a value to Eff_space data member. More... | |
TEff_space & | CStatistics_Base::SetEff_space (void) |
Assign a value to Eff_space data member. More... | |
bool | CStatistics_Base::IsSetKappa (void) const |
Karlin-Altschul parameter K Check if a value has been assigned to Kappa data member. More... | |
bool | CStatistics_Base::CanGetKappa (void) const |
Check if it is safe to call GetKappa method. More... | |
void | CStatistics_Base::ResetKappa (void) |
Reset Kappa data member. More... | |
TKappa | CStatistics_Base::GetKappa (void) const |
Get the Kappa member data. More... | |
void | CStatistics_Base::SetKappa (TKappa value) |
Assign a value to Kappa data member. More... | |
TKappa & | CStatistics_Base::SetKappa (void) |
Assign a value to Kappa data member. More... | |
bool | CStatistics_Base::IsSetLambda (void) const |
Karlin-Altschul parameter Lambda Check if a value has been assigned to Lambda data member. More... | |
bool | CStatistics_Base::CanGetLambda (void) const |
Check if it is safe to call GetLambda method. More... | |
void | CStatistics_Base::ResetLambda (void) |
Reset Lambda data member. More... | |
TLambda | CStatistics_Base::GetLambda (void) const |
Get the Lambda member data. More... | |
void | CStatistics_Base::SetLambda (TLambda value) |
Assign a value to Lambda data member. More... | |
TLambda & | CStatistics_Base::SetLambda (void) |
Assign a value to Lambda data member. More... | |
bool | CStatistics_Base::IsSetEntropy (void) const |
Karlin-Altschul parameter H Check if a value has been assigned to Entropy data member. More... | |
bool | CStatistics_Base::CanGetEntropy (void) const |
Check if it is safe to call GetEntropy method. More... | |
void | CStatistics_Base::ResetEntropy (void) |
Reset Entropy data member. More... | |
TEntropy | CStatistics_Base::GetEntropy (void) const |
Get the Entropy member data. More... | |
void | CStatistics_Base::SetEntropy (TEntropy value) |
Assign a value to Entropy data member. More... | |
TEntropy & | CStatistics_Base::SetEntropy (void) |
Assign a value to Entropy data member. More... | |
virtual void | CStatistics_Base::Reset (void) |
Reset the whole object. More... | |
CStatistics_Base::CStatistics_Base (const CStatistics_Base &) | |
CStatistics_Base & | CStatistics_Base::operator= (const CStatistics_Base &) |
typedef string CHit_Base::TAccession |
typedef int CHsp_Base::TAlign_len |
typedef double CHsp_Base::TBit_score |
typedef string CBlastOutput_Base::TDb |
Definition at line 95 of file BlastOutput_.hpp.
typedef Int8 CStatistics_Base::TDb_len |
Definition at line 82 of file Statistics_.hpp.
typedef int CStatistics_Base::TDb_num |
Definition at line 81 of file Statistics_.hpp.
typedef string CHit_Base::TDef |
typedef int CHsp_Base::TDensity |
typedef double CStatistics_Base::TEff_space |
Definition at line 84 of file Statistics_.hpp.
Definition at line 94 of file Parameters_.hpp.
typedef double CStatistics_Base::TEntropy |
Definition at line 87 of file Statistics_.hpp.
typedef double CHsp_Base::TEvalue |
typedef double CParameters_Base::TExpect |
Definition at line 86 of file Parameters_.hpp.
typedef string CParameters_Base::TFilter |
Definition at line 92 of file Parameters_.hpp.
typedef int CParameters_Base::TGap_extend |
Definition at line 91 of file Parameters_.hpp.
typedef int CParameters_Base::TGap_open |
Definition at line 90 of file Parameters_.hpp.
typedef int CHsp_Base::TGaps |
typedef int CHsp_Base::THit_frame |
typedef int CHsp_Base::THit_from |
typedef int CHsp_Base::THit_to |
typedef list< CRef< CHit > > CIteration_Base::THits |
Definition at line 95 of file Iteration_.hpp.
typedef string CHsp_Base::THseq |
typedef int CStatistics_Base::THsp_len |
Definition at line 83 of file Statistics_.hpp.
typedef list< CRef< CHsp > > CHit_Base::THsps |
typedef string CHit_Base::TId |
typedef int CHsp_Base::TIdentity |
typedef double CParameters_Base::TInclude |
Definition at line 87 of file Parameters_.hpp.
typedef int CIteration_Base::TIter_num |
Definition at line 91 of file Iteration_.hpp.
typedef list< CRef< CIteration > > CBlastOutput_Base::TIterations |
Definition at line 101 of file BlastOutput_.hpp.
typedef double CStatistics_Base::TKappa |
Definition at line 85 of file Statistics_.hpp.
typedef double CStatistics_Base::TLambda |
Definition at line 86 of file Statistics_.hpp.
typedef int CHit_Base::TLen |
typedef string CParameters_Base::TMatrix |
Definition at line 85 of file Parameters_.hpp.
Definition at line 102 of file BlastOutput_.hpp.
Definition at line 119 of file BlastOutput_.hpp.
typedef Tparent::CMemberIndex<E_memberIndex, 21> CHsp_Base::TmemberIndex |
Definition at line 110 of file Iteration_.hpp.
Definition at line 110 of file Parameters_.hpp.
Definition at line 100 of file Statistics_.hpp.
typedef string CIteration_Base::TMessage |
Definition at line 97 of file Iteration_.hpp.
typedef string CHsp_Base::TMidline |
typedef int CHit_Base::TNum |
typedef int CHsp_Base::TNum |
typedef CParameters CBlastOutput_Base::TParam |
Definition at line 100 of file BlastOutput_.hpp.
|
private |
Definition at line 67 of file BlastOutput.hpp.
|
private |
Definition at line 81 of file BlastOutput_.hpp.
|
private |
|
private |
|
private |
|
private |
|
private |
Definition at line 67 of file Iteration.hpp.
|
private |
Definition at line 80 of file Iteration_.hpp.
|
private |
Definition at line 67 of file Parameters.hpp.
|
private |
Definition at line 74 of file Parameters_.hpp.
|
private |
Definition at line 67 of file Statistics.hpp.
|
private |
Definition at line 70 of file Statistics_.hpp.
typedef string CParameters_Base::TPattern |
Definition at line 93 of file Parameters_.hpp.
typedef int CHsp_Base::TPattern_from |
typedef int CHsp_Base::TPattern_to |
typedef int CHsp_Base::TPositive |
typedef string CBlastOutput_Base::TProgram |
Definition at line 92 of file BlastOutput_.hpp.
typedef string CHsp_Base::TQseq |
typedef string CBlastOutput_Base::TQuery_def |
Definition at line 97 of file BlastOutput_.hpp.
typedef string CIteration_Base::TQuery_def |
Definition at line 93 of file Iteration_.hpp.
typedef int CHsp_Base::TQuery_frame |
typedef int CHsp_Base::TQuery_from |
typedef string CBlastOutput_Base::TQuery_ID |
Definition at line 96 of file BlastOutput_.hpp.
typedef string CIteration_Base::TQuery_ID |
Definition at line 92 of file Iteration_.hpp.
typedef int CBlastOutput_Base::TQuery_len |
Definition at line 98 of file BlastOutput_.hpp.
typedef int CIteration_Base::TQuery_len |
Definition at line 94 of file Iteration_.hpp.
typedef string CBlastOutput_Base::TQuery_seq |
Definition at line 99 of file BlastOutput_.hpp.
typedef int CHsp_Base::TQuery_to |
typedef string CBlastOutput_Base::TReference |
Definition at line 94 of file BlastOutput_.hpp.
typedef int CParameters_Base::TSc_match |
Definition at line 88 of file Parameters_.hpp.
typedef int CParameters_Base::TSc_mismatch |
Definition at line 89 of file Parameters_.hpp.
typedef double CHsp_Base::TScore |
typedef CStatistics CIteration_Base::TStat |
Definition at line 96 of file Iteration_.hpp.
typedef string CBlastOutput_Base::TVersion |
Definition at line 93 of file BlastOutput_.hpp.
|
strong |
Enumerator | |
---|---|
e__allMandatory | |
e_program | |
e_version | |
e_reference | |
e_db | |
e_query_ID | |
e_query_def | |
e_query_len | |
e_query_seq | |
e_param | |
e_iterations | |
e_mbstat |
Definition at line 105 of file BlastOutput_.hpp.
|
strong |
|
strong |
|
strong |
Enumerator | |
---|---|
e__allMandatory | |
e_iter_num | |
e_query_ID | |
e_query_def | |
e_query_len | |
e_hits | |
e_stat | |
e_message | |
e__allMandatory | |
e_iter_num | |
e_search |
Definition at line 100 of file Iteration_.hpp.
|
strong |
Definition at line 97 of file Parameters_.hpp.
|
strong |
Enumerator | |
---|---|
e__allMandatory | |
e_db_num | |
e_db_len | |
e_hsp_len | |
e_eff_space | |
e_kappa | |
e_lambda | |
e_entropy | |
e__allMandatory | |
e_db_num | |
e_db_len | |
e_hsp_len | |
e_eff_space | |
e_kappa | |
e_lambda | |
e_entropy |
Definition at line 90 of file Statistics_.hpp.
|
inline |
Check if it is safe to call GetAccession method.
Definition at line 513 of file Hit_.hpp.
References CHit_Base::IsSetAccession().
Referenced by CHit_Base::GetAccession().
|
inline |
Check if it is safe to call GetAlign_len method.
Definition at line 1652 of file Hsp_.hpp.
References CHsp_Base::IsSetAlign_len().
Referenced by CHsp_Base::GetAlign_len().
|
inline |
Check if it is safe to call GetBit_score method.
Definition at line 994 of file Hsp_.hpp.
References CHsp_Base::IsSetBit_score().
Referenced by CHsp_Base::GetBit_score().
|
inline |
Check if it is safe to call GetDb method.
Definition at line 723 of file BlastOutput_.hpp.
References CBlastOutput_Base::IsSetDb().
Referenced by CBlastOutput_Base::GetDb().
|
inline |
Check if it is safe to call GetDb_len method.
Definition at line 454 of file Statistics_.hpp.
References CStatistics_Base::IsSetDb_len().
Referenced by CStatistics_Base::GetDb_len().
|
inline |
Check if it is safe to call GetDb_num method.
Definition at line 407 of file Statistics_.hpp.
References CStatistics_Base::IsSetDb_num().
Referenced by CStatistics_Base::GetDb_num().
|
inline |
Check if it is safe to call GetDef method.
Definition at line 466 of file Hit_.hpp.
References CHit_Base::IsSetDef().
Referenced by CHit_Base::GetDef().
|
inline |
Check if it is safe to call GetDensity method.
Definition at line 1699 of file Hsp_.hpp.
References CHsp_Base::IsSetDensity().
Referenced by CHsp_Base::GetDensity().
|
inline |
Check if it is safe to call GetEff_space method.
Definition at line 548 of file Statistics_.hpp.
References CStatistics_Base::IsSetEff_space().
Referenced by CStatistics_Base::GetEff_space().
|
inline |
Check if it is safe to call GetEntrez_query method.
Definition at line 961 of file Parameters_.hpp.
References CParameters_Base::IsSetEntrez_query().
Referenced by CParameters_Base::GetEntrez_query().
|
inline |
Check if it is safe to call GetEntropy method.
Definition at line 689 of file Statistics_.hpp.
References CStatistics_Base::IsSetEntropy().
Referenced by CStatistics_Base::GetEntropy().
|
inline |
Check if it is safe to call GetEvalue method.
Definition at line 1088 of file Hsp_.hpp.
References CHsp_Base::IsSetEvalue().
Referenced by CHsp_Base::GetEvalue().
|
inline |
Check if it is safe to call GetExpect method.
Definition at line 585 of file Parameters_.hpp.
References CParameters_Base::IsSetExpect().
Referenced by CParameters_Base::GetExpect().
|
inline |
Check if it is safe to call GetFilter method.
Definition at line 867 of file Parameters_.hpp.
References CParameters_Base::IsSetFilter().
Referenced by CParameters_Base::GetFilter().
|
inline |
Check if it is safe to call GetGap_extend method.
Definition at line 820 of file Parameters_.hpp.
References CParameters_Base::IsSetGap_extend().
Referenced by CParameters_Base::GetGap_extend().
|
inline |
Check if it is safe to call GetGap_open method.
Definition at line 773 of file Parameters_.hpp.
References CParameters_Base::IsSetGap_open().
Referenced by CParameters_Base::GetGap_open().
|
inline |
Check if it is safe to call GetGaps method.
Definition at line 1605 of file Hsp_.hpp.
References CHsp_Base::IsSetGaps().
Referenced by CHsp_Base::GetGaps().
|
inline |
Check if it is safe to call GetHit_frame method.
Definition at line 1464 of file Hsp_.hpp.
References CHsp_Base::IsSetHit_frame().
Referenced by CHsp_Base::GetHit_frame().
|
inline |
Check if it is safe to call GetHit_from method.
Definition at line 1229 of file Hsp_.hpp.
References CHsp_Base::IsSetHit_from().
Referenced by CHsp_Base::GetHit_from().
|
inline |
Check if it is safe to call GetHit_to method.
Definition at line 1276 of file Hsp_.hpp.
References CHsp_Base::IsSetHit_to().
Referenced by CHsp_Base::GetHit_to().
|
inline |
Check if it is safe to call GetHits method.
Definition at line 602 of file Iteration_.hpp.
|
inline |
Check if it is safe to call GetHseq method.
Definition at line 1793 of file Hsp_.hpp.
References CHsp_Base::IsSetHseq().
Referenced by CHsp_Base::GetHseq().
|
inline |
Check if it is safe to call GetHsp_len method.
Definition at line 501 of file Statistics_.hpp.
References CStatistics_Base::IsSetHsp_len().
Referenced by CStatistics_Base::GetHsp_len().
|
inline |
|
inline |
Check if it is safe to call GetId method.
Definition at line 419 of file Hit_.hpp.
References CHit_Base::IsSetId().
Referenced by CHit_Base::GetId().
|
inline |
Check if it is safe to call GetIdentity method.
Definition at line 1511 of file Hsp_.hpp.
References CHsp_Base::IsSetIdentity().
Referenced by CHsp_Base::GetIdentity().
|
inline |
Check if it is safe to call GetInclude method.
Definition at line 632 of file Parameters_.hpp.
References CParameters_Base::IsSetInclude().
Referenced by CParameters_Base::GetInclude().
|
inline |
Check if it is safe to call GetIter_num method.
Definition at line 414 of file Iteration_.hpp.
References CIteration_Base::IsSetIter_num().
Referenced by CIteration_Base::GetIter_num().
|
inline |
Check if it is safe to call GetIterations method.
Definition at line 988 of file BlastOutput_.hpp.
|
inline |
Check if it is safe to call GetKappa method.
Definition at line 595 of file Statistics_.hpp.
References CStatistics_Base::IsSetKappa().
Referenced by CStatistics_Base::GetKappa().
|
inline |
Check if it is safe to call GetLambda method.
Definition at line 642 of file Statistics_.hpp.
References CStatistics_Base::IsSetLambda().
Referenced by CStatistics_Base::GetLambda().
|
inline |
Check if it is safe to call GetLen method.
Definition at line 560 of file Hit_.hpp.
References CHit_Base::IsSetLen().
Referenced by CHit_Base::GetLen().
|
inline |
Check if it is safe to call GetMatrix method.
Definition at line 538 of file Parameters_.hpp.
References CParameters_Base::IsSetMatrix().
Referenced by CParameters_Base::GetMatrix().
|
inline |
Check if it is safe to call GetMbstat method.
Definition at line 1013 of file BlastOutput_.hpp.
References CBlastOutput_Base::IsSetMbstat().
Referenced by CBlastOutput_Base::GetMbstat().
|
inline |
Check if it is safe to call GetMessage method.
Definition at line 648 of file Iteration_.hpp.
References CIteration_Base::IsSetMessage().
Referenced by CIteration_Base::GetMessage().
|
inline |
Check if it is safe to call GetMidline method.
Definition at line 1840 of file Hsp_.hpp.
References CHsp_Base::IsSetMidline().
Referenced by CHsp_Base::GetMidline().
|
inline |
Check if it is safe to call GetNum method.
Definition at line 372 of file Hit_.hpp.
References CHit_Base::IsSetNum().
Referenced by CHit_Base::GetNum().
|
inline |
Check if it is safe to call GetNum method.
Definition at line 947 of file Hsp_.hpp.
References CHsp_Base::IsSetNum().
Referenced by CHsp_Base::GetNum().
|
inline |
Check if it is safe to call GetParam method.
Definition at line 958 of file BlastOutput_.hpp.
|
inline |
Check if it is safe to call GetPattern method.
Definition at line 914 of file Parameters_.hpp.
References CParameters_Base::IsSetPattern().
Referenced by CParameters_Base::GetPattern().
|
inline |
Check if it is safe to call GetPattern_from method.
Definition at line 1323 of file Hsp_.hpp.
References CHsp_Base::IsSetPattern_from().
Referenced by CHsp_Base::GetPattern_from().
|
inline |
Check if it is safe to call GetPattern_to method.
Definition at line 1370 of file Hsp_.hpp.
References CHsp_Base::IsSetPattern_to().
Referenced by CHsp_Base::GetPattern_to().
|
inline |
Check if it is safe to call GetPositive method.
Definition at line 1558 of file Hsp_.hpp.
References CHsp_Base::IsSetPositive().
Referenced by CHsp_Base::GetPositive().
|
inline |
Check if it is safe to call GetProgram method.
Definition at line 582 of file BlastOutput_.hpp.
References CBlastOutput_Base::IsSetProgram().
Referenced by CBlastOutput_Base::GetProgram().
|
inline |
Check if it is safe to call GetQseq method.
Definition at line 1746 of file Hsp_.hpp.
References CHsp_Base::IsSetQseq().
Referenced by CHsp_Base::GetQseq().
|
inline |
Check if it is safe to call GetQuery_def method.
Definition at line 817 of file BlastOutput_.hpp.
References CBlastOutput_Base::IsSetQuery_def().
Referenced by CBlastOutput_Base::GetQuery_def().
|
inline |
Check if it is safe to call GetQuery_def method.
Definition at line 508 of file Iteration_.hpp.
References CIteration_Base::IsSetQuery_def().
Referenced by CIteration_Base::GetQuery_def().
|
inline |
Check if it is safe to call GetQuery_frame method.
Definition at line 1417 of file Hsp_.hpp.
References CHsp_Base::IsSetQuery_frame().
Referenced by CHsp_Base::GetQuery_frame().
|
inline |
Check if it is safe to call GetQuery_from method.
Definition at line 1135 of file Hsp_.hpp.
References CHsp_Base::IsSetQuery_from().
Referenced by CHsp_Base::GetQuery_from().
|
inline |
Check if it is safe to call GetQuery_ID method.
Definition at line 770 of file BlastOutput_.hpp.
References CBlastOutput_Base::IsSetQuery_ID().
Referenced by CBlastOutput_Base::GetQuery_ID().
|
inline |
Check if it is safe to call GetQuery_ID method.
Definition at line 461 of file Iteration_.hpp.
References CIteration_Base::IsSetQuery_ID().
Referenced by CIteration_Base::GetQuery_ID().
|
inline |
Check if it is safe to call GetQuery_len method.
Definition at line 864 of file BlastOutput_.hpp.
References CBlastOutput_Base::IsSetQuery_len().
Referenced by CBlastOutput_Base::GetQuery_len().
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inline |
Check if it is safe to call GetQuery_len method.
Definition at line 555 of file Iteration_.hpp.
References CIteration_Base::IsSetQuery_len().
Referenced by CIteration_Base::GetQuery_len().
|
inline |
Check if it is safe to call GetQuery_seq method.
Definition at line 911 of file BlastOutput_.hpp.
References CBlastOutput_Base::IsSetQuery_seq().
Referenced by CBlastOutput_Base::GetQuery_seq().
|
inline |
Check if it is safe to call GetQuery_to method.
Definition at line 1182 of file Hsp_.hpp.
References CHsp_Base::IsSetQuery_to().
Referenced by CHsp_Base::GetQuery_to().
|
inline |
Check if it is safe to call GetReference method.
Definition at line 676 of file BlastOutput_.hpp.
References CBlastOutput_Base::IsSetReference().
Referenced by CBlastOutput_Base::GetReference().
|
inline |
Check if it is safe to call GetSc_match method.
Definition at line 679 of file Parameters_.hpp.
References CParameters_Base::IsSetSc_match().
Referenced by CParameters_Base::GetSc_match().
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inline |
Check if it is safe to call GetSc_mismatch method.
Definition at line 726 of file Parameters_.hpp.
References CParameters_Base::IsSetSc_mismatch().
Referenced by CParameters_Base::GetSc_mismatch().
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inline |
Check if it is safe to call GetScore method.
Definition at line 1041 of file Hsp_.hpp.
References CHsp_Base::IsSetScore().
Referenced by CHsp_Base::GetScore().
|
inline |
Check if it is safe to call GetStat method.
Definition at line 627 of file Iteration_.hpp.
References CIteration_Base::IsSetStat().
Referenced by CIteration_Base::GetStat().
|
inline |
Check if it is safe to call GetVersion method.
Definition at line 629 of file BlastOutput_.hpp.
References CBlastOutput_Base::IsSetVersion().
Referenced by CBlastOutput_Base::GetVersion().
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private |
|
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Definition at line 86 of file BlastOutput.hpp.
|
private |
END_CLASS_INFO CBlastOutput_Base::CBlastOutput_Base | ( | void | ) |
Definition at line 168 of file BlastOutput_.cpp.
References CObject::IsAllocatedInPool(), CBlastOutput_Base::m_set_State, and CBlastOutput_Base::ResetParam().
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inline |
Definition at line 86 of file Hit.hpp.
Referenced by CHit::Clone(), and CHit::ResolveSubHitConflicts().
END_CLASS_INFO CHit_Base::CHit_Base | ( | void | ) |
Definition at line 101 of file Hit_.cpp.
References CHit_Base::m_set_State.
END_CLASS_INFO CHsp_Base::CHsp_Base | ( | void | ) |
Definition at line 122 of file Hsp_.cpp.
References CHsp_Base::m_set_State.
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private |
|
inline |
Definition at line 86 of file Iteration.hpp.
|
private |
END_CLASS_INFO CIteration_Base::CIteration_Base | ( | void | ) |
Definition at line 121 of file Iteration_.cpp.
References CIteration_Base::m_set_State.
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private |
|
inline |
Definition at line 86 of file Parameters.hpp.
|
private |
END_CLASS_INFO CParameters_Base::CParameters_Base | ( | void | ) |
Definition at line 108 of file Parameters_.cpp.
References CParameters_Base::m_set_State.
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private |
|
inline |
Definition at line 86 of file Statistics.hpp.
|
private |
END_CLASS_INFO CStatistics_Base::CStatistics_Base | ( | void | ) |
Definition at line 78 of file Statistics_.cpp.
References CStatistics_Base::m_set_State.
CBlastOutput_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CHit_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CHsp_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CIteration_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CParameters_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CStatistics_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
|
inline |
Get the Accession member data.
Definition at line 519 of file Hit_.hpp.
References CHit_Base::CanGetAccession(), CHit_Base::m_Accession, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Align_len member data.
Definition at line 1665 of file Hsp_.hpp.
References CHsp_Base::CanGetAlign_len(), CHsp_Base::m_Align_len, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Bit_score member data.
Definition at line 1007 of file Hsp_.hpp.
References CHsp_Base::CanGetBit_score(), CHsp_Base::m_Bit_score, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Db member data.
Definition at line 729 of file BlastOutput_.hpp.
References CBlastOutput_Base::CanGetDb(), CBlastOutput_Base::m_Db, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Db_len member data.
Definition at line 467 of file Statistics_.hpp.
References CStatistics_Base::CanGetDb_len(), CStatistics_Base::m_Db_len, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Db_num member data.
Definition at line 420 of file Statistics_.hpp.
References CStatistics_Base::CanGetDb_num(), CStatistics_Base::m_Db_num, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Def member data.
Definition at line 472 of file Hit_.hpp.
References CHit_Base::CanGetDef(), CHit_Base::m_Def, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Density member data.
Definition at line 1712 of file Hsp_.hpp.
References CHsp_Base::CanGetDensity(), CHsp_Base::m_Density, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Eff_space member data.
Definition at line 561 of file Statistics_.hpp.
References CStatistics_Base::CanGetEff_space(), CStatistics_Base::m_Eff_space, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Entrez_query member data.
Definition at line 967 of file Parameters_.hpp.
References CParameters_Base::CanGetEntrez_query(), CParameters_Base::m_Entrez_query, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Entropy member data.
Definition at line 702 of file Statistics_.hpp.
References CStatistics_Base::CanGetEntropy(), CStatistics_Base::m_Entropy, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Evalue member data.
Definition at line 1101 of file Hsp_.hpp.
References CHsp_Base::CanGetEvalue(), CHsp_Base::m_Evalue, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Expect member data.
Definition at line 598 of file Parameters_.hpp.
References CParameters_Base::CanGetExpect(), CParameters_Base::m_Expect, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Filter member data.
Definition at line 873 of file Parameters_.hpp.
References CParameters_Base::CanGetFilter(), CParameters_Base::m_Filter, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Gap_extend member data.
Definition at line 833 of file Parameters_.hpp.
References CParameters_Base::CanGetGap_extend(), CParameters_Base::m_Gap_extend, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Gap_open member data.
Definition at line 786 of file Parameters_.hpp.
References CParameters_Base::CanGetGap_open(), CParameters_Base::m_Gap_open, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Gaps member data.
Definition at line 1618 of file Hsp_.hpp.
References CHsp_Base::CanGetGaps(), CHsp_Base::m_Gaps, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Hit_frame member data.
Definition at line 1477 of file Hsp_.hpp.
References CHsp_Base::CanGetHit_frame(), CHsp_Base::m_Hit_frame, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Hit_from member data.
Definition at line 1242 of file Hsp_.hpp.
References CHsp_Base::CanGetHit_from(), CHsp_Base::m_Hit_from, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Hit_to member data.
Definition at line 1289 of file Hsp_.hpp.
References CHsp_Base::CanGetHit_to(), CHsp_Base::m_Hit_to, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Hits member data.
Definition at line 608 of file Iteration_.hpp.
References CIteration_Base::m_Hits.
|
inline |
Get the Hseq member data.
Definition at line 1799 of file Hsp_.hpp.
References CHsp_Base::CanGetHseq(), CHsp_Base::m_Hseq, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Hsp_len member data.
Definition at line 514 of file Statistics_.hpp.
References CStatistics_Base::CanGetHsp_len(), CStatistics_Base::m_Hsp_len, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Hsps member data.
Definition at line 613 of file Hit_.hpp.
References CHit_Base::m_Hsps.
|
inline |
Get the Id member data.
Definition at line 425 of file Hit_.hpp.
References CHit_Base::CanGetId(), CHit_Base::m_Id, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Identity member data.
Definition at line 1524 of file Hsp_.hpp.
References CHsp_Base::CanGetIdentity(), CHsp_Base::m_Identity, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Include member data.
Definition at line 645 of file Parameters_.hpp.
References CParameters_Base::CanGetInclude(), CParameters_Base::m_Include, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Iter_num member data.
Definition at line 427 of file Iteration_.hpp.
References CIteration_Base::CanGetIter_num(), CIteration_Base::m_Iter_num, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Iterations member data.
Definition at line 994 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_Iterations.
|
inline |
Get the Kappa member data.
Definition at line 608 of file Statistics_.hpp.
References CStatistics_Base::CanGetKappa(), CStatistics_Base::m_Kappa, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Lambda member data.
Definition at line 655 of file Statistics_.hpp.
References CStatistics_Base::CanGetLambda(), CStatistics_Base::m_Lambda, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Len member data.
Definition at line 573 of file Hit_.hpp.
References CHit_Base::CanGetLen(), CHit_Base::m_Len, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Matrix member data.
Definition at line 544 of file Parameters_.hpp.
References CParameters_Base::CanGetMatrix(), CParameters_Base::m_Matrix, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Mbstat member data.
Definition at line 1019 of file BlastOutput_.hpp.
References CBlastOutput_Base::CanGetMbstat(), CBlastOutput_Base::m_Mbstat, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Message member data.
Definition at line 654 of file Iteration_.hpp.
References CIteration_Base::CanGetMessage(), CIteration_Base::m_Message, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Midline member data.
Definition at line 1846 of file Hsp_.hpp.
References CHsp_Base::CanGetMidline(), CHsp_Base::m_Midline, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Num member data.
Definition at line 385 of file Hit_.hpp.
References CHit_Base::CanGetNum(), CHit_Base::m_Num, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Num member data.
Definition at line 960 of file Hsp_.hpp.
References CHsp_Base::CanGetNum(), CHsp_Base::m_Num, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Param member data.
Definition at line 964 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_Param, and CBlastOutput_Base::ResetParam().
|
inline |
Get the Pattern member data.
Definition at line 920 of file Parameters_.hpp.
References CParameters_Base::CanGetPattern(), CParameters_Base::m_Pattern, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Pattern_from member data.
Definition at line 1336 of file Hsp_.hpp.
References CHsp_Base::CanGetPattern_from(), CHsp_Base::m_Pattern_from, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Pattern_to member data.
Definition at line 1383 of file Hsp_.hpp.
References CHsp_Base::CanGetPattern_to(), CHsp_Base::m_Pattern_to, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Positive member data.
Definition at line 1571 of file Hsp_.hpp.
References CHsp_Base::CanGetPositive(), CHsp_Base::m_Positive, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Program member data.
Definition at line 588 of file BlastOutput_.hpp.
References CBlastOutput_Base::CanGetProgram(), CBlastOutput_Base::m_Program, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Qseq member data.
Definition at line 1752 of file Hsp_.hpp.
References CHsp_Base::CanGetQseq(), CHsp_Base::m_Qseq, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Query_def member data.
Definition at line 823 of file BlastOutput_.hpp.
References CBlastOutput_Base::CanGetQuery_def(), CBlastOutput_Base::m_Query_def, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Query_def member data.
Definition at line 514 of file Iteration_.hpp.
References CIteration_Base::CanGetQuery_def(), CIteration_Base::m_Query_def, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Query_frame member data.
Definition at line 1430 of file Hsp_.hpp.
References CHsp_Base::CanGetQuery_frame(), CHsp_Base::m_Query_frame, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Query_from member data.
Definition at line 1148 of file Hsp_.hpp.
References CHsp_Base::CanGetQuery_from(), CHsp_Base::m_Query_from, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Query_ID member data.
Definition at line 776 of file BlastOutput_.hpp.
References CBlastOutput_Base::CanGetQuery_ID(), CBlastOutput_Base::m_Query_ID, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Query_ID member data.
Definition at line 467 of file Iteration_.hpp.
References CIteration_Base::CanGetQuery_ID(), CIteration_Base::m_Query_ID, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Query_len member data.
Definition at line 877 of file BlastOutput_.hpp.
References CBlastOutput_Base::CanGetQuery_len(), CBlastOutput_Base::m_Query_len, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Query_len member data.
Definition at line 568 of file Iteration_.hpp.
References CIteration_Base::CanGetQuery_len(), CIteration_Base::m_Query_len, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Query_seq member data.
Definition at line 917 of file BlastOutput_.hpp.
References CBlastOutput_Base::CanGetQuery_seq(), CBlastOutput_Base::m_Query_seq, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Query_to member data.
Definition at line 1195 of file Hsp_.hpp.
References CHsp_Base::CanGetQuery_to(), CHsp_Base::m_Query_to, and CSerialObject::ThrowUnassigned().
|
inline |
Get the Reference member data.
Definition at line 682 of file BlastOutput_.hpp.
References CBlastOutput_Base::CanGetReference(), CBlastOutput_Base::m_Reference, and CSerialObject::ThrowUnassigned().
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Get the Sc_match member data.
Definition at line 692 of file Parameters_.hpp.
References CParameters_Base::CanGetSc_match(), CParameters_Base::m_Sc_match, and CSerialObject::ThrowUnassigned().
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Get the Sc_mismatch member data.
Definition at line 739 of file Parameters_.hpp.
References CParameters_Base::CanGetSc_mismatch(), CParameters_Base::m_Sc_mismatch, and CSerialObject::ThrowUnassigned().
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Get the Score member data.
Definition at line 1054 of file Hsp_.hpp.
References CHsp_Base::CanGetScore(), CHsp_Base::m_Score, and CSerialObject::ThrowUnassigned().
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Get the Stat member data.
Definition at line 633 of file Iteration_.hpp.
References CIteration_Base::CanGetStat(), CIteration_Base::m_Stat, and CSerialObject::ThrowUnassigned().
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Get the Version member data.
Definition at line 635 of file BlastOutput_.hpp.
References CBlastOutput_Base::CanGetVersion(), CBlastOutput_Base::m_Version, and CSerialObject::ThrowUnassigned().
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accession Check if a value has been assigned to Accession data member.
Data member Accession is mandatory; its type is defined as 'typedef string TAccession'
Definition at line 507 of file Hit_.hpp.
References CHit_Base::m_set_State.
Referenced by CHit_Base::CanGetAccession(), and CHit_Base::SetAccession().
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length of the alignment used Check if a value has been assigned to Align_len data member.
Data member Align_len is optional; its type is defined as 'typedef int TAlign_len'
Definition at line 1646 of file Hsp_.hpp.
References CHsp_Base::m_set_State.
Referenced by CHsp_Base::CanGetAlign_len(), and CHsp_Base::SetAlign_len().
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score (in bits) of HSP Check if a value has been assigned to Bit_score data member.
Data member Bit_score is mandatory; its type is defined as 'typedef double TBit_score'
Definition at line 988 of file Hsp_.hpp.
References CHsp_Base::m_set_State.
Referenced by CHsp_Base::CanGetBit_score(), and CHsp_Base::SetBit_score().
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BLAST Database name Check if a value has been assigned to Db data member.
Data member Db is mandatory; its type is defined as 'typedef string TDb'
Definition at line 717 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_set_State.
Referenced by CBlastOutput_Base::CanGetDb(), and CBlastOutput_Base::SetDb().
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Length of BLAST db Check if a value has been assigned to Db_len data member.
Data member Db_len is mandatory; its type is defined as 'typedef Int8 TDb_len'
Definition at line 448 of file Statistics_.hpp.
References CStatistics_Base::m_set_State.
Referenced by CStatistics_Base::CanGetDb_len(), and CStatistics_Base::SetDb_len().
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Number of sequences in BLAST db Check if a value has been assigned to Db_num data member.
Data member Db_num is mandatory; its type is defined as 'typedef int TDb_num'
Definition at line 401 of file Statistics_.hpp.
References CStatistics_Base::m_set_State.
Referenced by CStatistics_Base::CanGetDb_num(), and CStatistics_Base::SetDb_num().
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definition line of subject Check if a value has been assigned to Def data member.
Data member Def is mandatory; its type is defined as 'typedef string TDef'
Definition at line 460 of file Hit_.hpp.
References CHit_Base::m_set_State.
Referenced by CHit_Base::CanGetDef(), and CHit_Base::SetDef().
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score density Check if a value has been assigned to Density data member.
Data member Density is optional; its type is defined as 'typedef int TDensity'
Definition at line 1693 of file Hsp_.hpp.
References CHsp_Base::m_set_State.
Referenced by CHsp_Base::CanGetDensity(), and CHsp_Base::SetDensity().
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Effective search space Check if a value has been assigned to Eff_space data member.
Data member Eff_space is mandatory; its type is defined as 'typedef double TEff_space'
Definition at line 542 of file Statistics_.hpp.
References CStatistics_Base::m_set_State.
Referenced by CStatistics_Base::CanGetEff_space(), and CStatistics_Base::SetEff_space().
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Limit of request to Entrez query Check if a value has been assigned to Entrez_query data member.
Data member Entrez_query is optional; its type is defined as 'typedef string TEntrez_query'
Definition at line 955 of file Parameters_.hpp.
References CParameters_Base::m_set_State.
Referenced by CParameters_Base::CanGetEntrez_query(), and CParameters_Base::SetEntrez_query().
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Karlin-Altschul parameter H Check if a value has been assigned to Entropy data member.
Data member Entropy is mandatory; its type is defined as 'typedef double TEntropy'
Definition at line 683 of file Statistics_.hpp.
References CStatistics_Base::m_set_State.
Referenced by CStatistics_Base::CanGetEntropy(), and CStatistics_Base::SetEntropy().
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e-value of HSP Check if a value has been assigned to Evalue data member.
Data member Evalue is mandatory; its type is defined as 'typedef double TEvalue'
Definition at line 1082 of file Hsp_.hpp.
References CHsp_Base::m_set_State.
Referenced by CHsp_Base::CanGetEvalue(), and CHsp_Base::SetEvalue().
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Expectation threshold (-e) Check if a value has been assigned to Expect data member.
Data member Expect is mandatory; its type is defined as 'typedef double TExpect'
Definition at line 579 of file Parameters_.hpp.
References CParameters_Base::m_set_State.
Referenced by CParameters_Base::CanGetExpect(), and CParameters_Base::SetExpect().
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Filtering options (-F) Check if a value has been assigned to Filter data member.
Data member Filter is optional; its type is defined as 'typedef string TFilter'
Definition at line 861 of file Parameters_.hpp.
References CParameters_Base::m_set_State.
Referenced by CParameters_Base::CanGetFilter(), and CParameters_Base::SetFilter().
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Gap extension cost (-E) Check if a value has been assigned to Gap_extend data member.
Data member Gap_extend is mandatory; its type is defined as 'typedef int TGap_extend'
Definition at line 814 of file Parameters_.hpp.
References CParameters_Base::m_set_State.
Referenced by CParameters_Base::CanGetGap_extend(), and CParameters_Base::SetGap_extend().
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Gap opening cost (-G) Check if a value has been assigned to Gap_open data member.
Data member Gap_open is mandatory; its type is defined as 'typedef int TGap_open'
Definition at line 767 of file Parameters_.hpp.
References CParameters_Base::m_set_State.
Referenced by CParameters_Base::CanGetGap_open(), and CParameters_Base::SetGap_open().
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number of gaps in HSP Check if a value has been assigned to Gaps data member.
Data member Gaps is optional; its type is defined as 'typedef int TGaps'
Definition at line 1599 of file Hsp_.hpp.
References CHsp_Base::m_set_State.
Referenced by CHsp_Base::CanGetGaps(), and CHsp_Base::SetGaps().
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translation frame of subject Check if a value has been assigned to Hit_frame data member.
Data member Hit_frame is optional; its type is defined as 'typedef int THit_frame'
Definition at line 1458 of file Hsp_.hpp.
References CHsp_Base::m_set_State.
Referenced by CHsp_Base::CanGetHit_frame(), and CHsp_Base::SetHit_frame().
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start of HSP in subject Check if a value has been assigned to Hit_from data member.
Data member Hit_from is mandatory; its type is defined as 'typedef int THit_from'
Definition at line 1223 of file Hsp_.hpp.
References CHsp_Base::m_set_State.
Referenced by CHsp_Base::CanGetHit_from(), and CHsp_Base::SetHit_from().
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end of HSP in subject Check if a value has been assigned to Hit_to data member.
Data member Hit_to is mandatory; its type is defined as 'typedef int THit_to'
Definition at line 1270 of file Hsp_.hpp.
References CHsp_Base::m_set_State.
Referenced by CHsp_Base::CanGetHit_to(), and CHsp_Base::SetHit_to().
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Hits one for every db sequence Check if a value has been assigned to Hits data member.
Data member Hits is optional; its type is defined as 'typedef list< CRef< CHit > > THits'
Definition at line 596 of file Iteration_.hpp.
References CIteration_Base::m_set_State.
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alignment string for subject (with gaps) Check if a value has been assigned to Hseq data member.
Data member Hseq is mandatory; its type is defined as 'typedef string THseq'
Definition at line 1787 of file Hsp_.hpp.
References CHsp_Base::m_set_State.
Referenced by CHsp_Base::CanGetHseq(), and CHsp_Base::SetHseq().
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Effective HSP length Check if a value has been assigned to Hsp_len data member.
Data member Hsp_len is mandatory; its type is defined as 'typedef int THsp_len'
Definition at line 495 of file Statistics_.hpp.
References CStatistics_Base::m_set_State.
Referenced by CStatistics_Base::CanGetHsp_len(), and CStatistics_Base::SetHsp_len().
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all HSP regions for the given subject Check if a value has been assigned to Hsps data member.
Data member Hsps is optional; its type is defined as 'typedef list< CRef< CHsp > > THsps'
Definition at line 601 of file Hit_.hpp.
References CHit_Base::m_set_State.
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SeqId of subject Check if a value has been assigned to Id data member.
Data member Id is mandatory; its type is defined as 'typedef string TId'
Definition at line 413 of file Hit_.hpp.
References CHit_Base::m_set_State.
Referenced by CHit_Base::CanGetId(), and CHit_Base::SetId().
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number of identities in HSP Check if a value has been assigned to Identity data member.
Data member Identity is optional; its type is defined as 'typedef int TIdentity'
Definition at line 1505 of file Hsp_.hpp.
References CHsp_Base::m_set_State.
Referenced by CHsp_Base::CanGetIdentity(), and CHsp_Base::SetIdentity().
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Inclusion threshold (-h) Check if a value has been assigned to Include data member.
Data member Include is optional; its type is defined as 'typedef double TInclude'
Definition at line 626 of file Parameters_.hpp.
References CParameters_Base::m_set_State.
Referenced by CParameters_Base::CanGetInclude(), and CParameters_Base::SetInclude().
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iteration number Check if a value has been assigned to Iter_num data member.
Data member Iter_num is mandatory; its type is defined as 'typedef int TIter_num'
Definition at line 408 of file Iteration_.hpp.
References CIteration_Base::m_set_State.
Referenced by CIteration_Base::CanGetIter_num(), and CIteration_Base::SetIter_num().
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Check if a value has been assigned to Iterations data member.
Data member Iterations is mandatory; its type is defined as 'typedef list< CRef< CIteration > > TIterations'
Definition at line 982 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_set_State.
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Karlin-Altschul parameter K Check if a value has been assigned to Kappa data member.
Data member Kappa is mandatory; its type is defined as 'typedef double TKappa'
Definition at line 589 of file Statistics_.hpp.
References CStatistics_Base::m_set_State.
Referenced by CStatistics_Base::CanGetKappa(), and CStatistics_Base::SetKappa().
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Karlin-Altschul parameter Lambda Check if a value has been assigned to Lambda data member.
Data member Lambda is mandatory; its type is defined as 'typedef double TLambda'
Definition at line 636 of file Statistics_.hpp.
References CStatistics_Base::m_set_State.
Referenced by CStatistics_Base::CanGetLambda(), and CStatistics_Base::SetLambda().
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length of subject Check if a value has been assigned to Len data member.
Data member Len is mandatory; its type is defined as 'typedef int TLen'
Definition at line 554 of file Hit_.hpp.
References CHit_Base::m_set_State.
Referenced by CHit_Base::CanGetLen(), and CHit_Base::SetLen().
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Matrix used (-M) Check if a value has been assigned to Matrix data member.
Data member Matrix is optional; its type is defined as 'typedef string TMatrix'
Definition at line 532 of file Parameters_.hpp.
References CParameters_Base::m_set_State.
Referenced by CParameters_Base::CanGetMatrix(), and CParameters_Base::SetMatrix().
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Mega BLAST search statistics Check if a value has been assigned to Mbstat data member.
Data member Mbstat is optional; its type is defined as 'typedef CStatistics TMbstat'
Definition at line 1007 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_Mbstat.
Referenced by CBlastOutput_Base::CanGetMbstat().
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Some (error?) information Check if a value has been assigned to Message data member.
Data member Message is optional; its type is defined as 'typedef string TMessage'
Definition at line 642 of file Iteration_.hpp.
References CIteration_Base::m_set_State.
Referenced by CIteration_Base::CanGetMessage(), and CIteration_Base::SetMessage().
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formating middle line Check if a value has been assigned to Midline data member.
Data member Midline is optional; its type is defined as 'typedef string TMidline'
Definition at line 1834 of file Hsp_.hpp.
References CHsp_Base::m_set_State.
Referenced by CHsp_Base::CanGetMidline(), and CHsp_Base::SetMidline().
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hit number Check if a value has been assigned to Num data member.
Data member Num is mandatory; its type is defined as 'typedef int TNum'
Definition at line 366 of file Hit_.hpp.
References CHit_Base::m_set_State.
Referenced by CHit_Base::CanGetNum(), and CHit_Base::SetNum().
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HSP number Check if a value has been assigned to Num data member.
Data member Num is mandatory; its type is defined as 'typedef int TNum'
Definition at line 941 of file Hsp_.hpp.
References CHsp_Base::m_set_State.
Referenced by CHsp_Base::CanGetNum(), and CHsp_Base::SetNum().
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search parameters Check if a value has been assigned to Param data member.
Data member Param is mandatory; its type is defined as 'typedef CParameters TParam'
Definition at line 952 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_Param.
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PHI-BLAST pattern Check if a value has been assigned to Pattern data member.
Data member Pattern is optional; its type is defined as 'typedef string TPattern'
Definition at line 908 of file Parameters_.hpp.
References CParameters_Base::m_set_State.
Referenced by CParameters_Base::CanGetPattern(), and CParameters_Base::SetPattern().
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start of PHI-BLAST pattern Check if a value has been assigned to Pattern_from data member.
Data member Pattern_from is optional; its type is defined as 'typedef int TPattern_from'
Definition at line 1317 of file Hsp_.hpp.
References CHsp_Base::m_set_State.
Referenced by CHsp_Base::CanGetPattern_from(), and CHsp_Base::SetPattern_from().
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end of PHI-BLAST pattern Check if a value has been assigned to Pattern_to data member.
Data member Pattern_to is optional; its type is defined as 'typedef int TPattern_to'
Definition at line 1364 of file Hsp_.hpp.
References CHsp_Base::m_set_State.
Referenced by CHsp_Base::CanGetPattern_to(), and CHsp_Base::SetPattern_to().
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number of positives in HSP Check if a value has been assigned to Positive data member.
Data member Positive is optional; its type is defined as 'typedef int TPositive'
Definition at line 1552 of file Hsp_.hpp.
References CHsp_Base::m_set_State.
Referenced by CHsp_Base::CanGetPositive(), and CHsp_Base::SetPositive().
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BLAST program: blastp, tblastx etc.
Check if a value has been assigned to Program data member.
Data member Program is mandatory; its type is defined as 'typedef string TProgram'
Definition at line 576 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_set_State.
Referenced by CBlastOutput_Base::CanGetProgram(), and CBlastOutput_Base::SetProgram().
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alignment string for the query (with gaps) Check if a value has been assigned to Qseq data member.
Data member Qseq is mandatory; its type is defined as 'typedef string TQseq'
Definition at line 1740 of file Hsp_.hpp.
References CHsp_Base::m_set_State.
Referenced by CHsp_Base::CanGetQseq(), and CHsp_Base::SetQseq().
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Definition line of query Check if a value has been assigned to Query_def data member.
Data member Query_def is mandatory; its type is defined as 'typedef string TQuery_def'
Definition at line 811 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_set_State.
Referenced by CBlastOutput_Base::CanGetQuery_def(), and CBlastOutput_Base::SetQuery_def().
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Definition line of query Check if a value has been assigned to Query_def data member.
Data member Query_def is optional; its type is defined as 'typedef string TQuery_def'
Definition at line 502 of file Iteration_.hpp.
References CIteration_Base::m_set_State.
Referenced by CIteration_Base::CanGetQuery_def(), and CIteration_Base::SetQuery_def().
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translation frame of query Check if a value has been assigned to Query_frame data member.
Data member Query_frame is optional; its type is defined as 'typedef int TQuery_frame'
Definition at line 1411 of file Hsp_.hpp.
References CHsp_Base::m_set_State.
Referenced by CHsp_Base::CanGetQuery_frame(), and CHsp_Base::SetQuery_frame().
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start of HSP in query Check if a value has been assigned to Query_from data member.
Data member Query_from is mandatory; its type is defined as 'typedef int TQuery_from'
Definition at line 1129 of file Hsp_.hpp.
References CHsp_Base::m_set_State.
Referenced by CHsp_Base::CanGetQuery_from(), and CHsp_Base::SetQuery_from().
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SeqId of query Check if a value has been assigned to Query_ID data member.
Data member Query_ID is mandatory; its type is defined as 'typedef string TQuery_ID'
Definition at line 764 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_set_State.
Referenced by CBlastOutput_Base::CanGetQuery_ID(), and CBlastOutput_Base::SetQuery_ID().
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SeqId of query Check if a value has been assigned to Query_ID data member.
Data member Query_ID is optional; its type is defined as 'typedef string TQuery_ID'
Definition at line 455 of file Iteration_.hpp.
References CIteration_Base::m_set_State.
Referenced by CIteration_Base::CanGetQuery_ID(), and CIteration_Base::SetQuery_ID().
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length of query sequence Check if a value has been assigned to Query_len data member.
Data member Query_len is mandatory; its type is defined as 'typedef int TQuery_len'
Definition at line 858 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_set_State.
Referenced by CBlastOutput_Base::CanGetQuery_len(), and CBlastOutput_Base::SetQuery_len().
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length of query sequence Check if a value has been assigned to Query_len data member.
Data member Query_len is optional; its type is defined as 'typedef int TQuery_len'
Definition at line 549 of file Iteration_.hpp.
References CIteration_Base::m_set_State.
Referenced by CIteration_Base::CanGetQuery_len(), and CIteration_Base::SetQuery_len().
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query sequence itself Check if a value has been assigned to Query_seq data member.
Data member Query_seq is optional; its type is defined as 'typedef string TQuery_seq'
Definition at line 905 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_set_State.
Referenced by CBlastOutput_Base::CanGetQuery_seq(), and CBlastOutput_Base::SetQuery_seq().
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end of HSP Check if a value has been assigned to Query_to data member.
Data member Query_to is mandatory; its type is defined as 'typedef int TQuery_to'
Definition at line 1176 of file Hsp_.hpp.
References CHsp_Base::m_set_State.
Referenced by CHsp_Base::CanGetQuery_to(), and CHsp_Base::SetQuery_to().
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Steven, David, Tom and others Check if a value has been assigned to Reference data member.
Data member Reference is mandatory; its type is defined as 'typedef string TReference'
Definition at line 670 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_set_State.
Referenced by CBlastOutput_Base::CanGetReference(), and CBlastOutput_Base::SetReference().
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match score for NT (-r) Check if a value has been assigned to Sc_match data member.
Data member Sc_match is optional; its type is defined as 'typedef int TSc_match'
Definition at line 673 of file Parameters_.hpp.
References CParameters_Base::m_set_State.
Referenced by CParameters_Base::CanGetSc_match(), and CParameters_Base::SetSc_match().
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mismatch score for NT (-q) Check if a value has been assigned to Sc_mismatch data member.
Data member Sc_mismatch is optional; its type is defined as 'typedef int TSc_mismatch'
Definition at line 720 of file Parameters_.hpp.
References CParameters_Base::m_set_State.
Referenced by CParameters_Base::CanGetSc_mismatch(), and CParameters_Base::SetSc_mismatch().
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score of HSP Check if a value has been assigned to Score data member.
Data member Score is mandatory; its type is defined as 'typedef double TScore'
Definition at line 1035 of file Hsp_.hpp.
References CHsp_Base::m_set_State.
Referenced by CHsp_Base::CanGetScore(), and CHsp_Base::SetScore().
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search statistics Check if a value has been assigned to Stat data member.
Data member Stat is optional; its type is defined as 'typedef CStatistics TStat'
Definition at line 621 of file Iteration_.hpp.
References CIteration_Base::m_Stat.
Referenced by CIteration_Base::CanGetStat().
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Program version Check if a value has been assigned to Version data member.
Data member Version is mandatory; its type is defined as 'typedef string TVersion'
Definition at line 623 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_set_State.
Referenced by CBlastOutput_Base::CanGetVersion(), and CBlastOutput_Base::SetVersion().
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Reset the whole object.
Definition at line 132 of file BlastOutput_.cpp.
References CBlastOutput_Base::ResetDb(), CBlastOutput_Base::ResetIterations(), CBlastOutput_Base::ResetMbstat(), CBlastOutput_Base::ResetParam(), CBlastOutput_Base::ResetProgram(), CBlastOutput_Base::ResetQuery_def(), CBlastOutput_Base::ResetQuery_ID(), CBlastOutput_Base::ResetQuery_len(), CBlastOutput_Base::ResetQuery_seq(), CBlastOutput_Base::ResetReference(), and CBlastOutput_Base::ResetVersion().
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Reset the whole object.
Definition at line 75 of file Hit_.cpp.
References CHit_Base::ResetAccession(), CHit_Base::ResetDef(), CHit_Base::ResetHsps(), CHit_Base::ResetId(), CHit_Base::ResetLen(), and CHit_Base::ResetNum().
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Reset the whole object.
Definition at line 68 of file Hsp_.cpp.
References CHsp_Base::ResetAlign_len(), CHsp_Base::ResetBit_score(), CHsp_Base::ResetDensity(), CHsp_Base::ResetEvalue(), CHsp_Base::ResetGaps(), CHsp_Base::ResetHit_frame(), CHsp_Base::ResetHit_from(), CHsp_Base::ResetHit_to(), CHsp_Base::ResetHseq(), CHsp_Base::ResetIdentity(), CHsp_Base::ResetMidline(), CHsp_Base::ResetNum(), CHsp_Base::ResetPattern_from(), CHsp_Base::ResetPattern_to(), CHsp_Base::ResetPositive(), CHsp_Base::ResetQseq(), CHsp_Base::ResetQuery_frame(), CHsp_Base::ResetQuery_from(), CHsp_Base::ResetQuery_to(), and CHsp_Base::ResetScore().
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Reset the whole object.
Definition at line 93 of file Iteration_.cpp.
References CIteration_Base::ResetHits(), CIteration_Base::ResetIter_num(), CIteration_Base::ResetMessage(), CIteration_Base::ResetQuery_def(), CIteration_Base::ResetQuery_ID(), CIteration_Base::ResetQuery_len(), and CIteration_Base::ResetStat().
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Reset the whole object.
Definition at line 74 of file Parameters_.cpp.
References CParameters_Base::ResetEntrez_query(), CParameters_Base::ResetExpect(), CParameters_Base::ResetFilter(), CParameters_Base::ResetGap_extend(), CParameters_Base::ResetGap_open(), CParameters_Base::ResetInclude(), CParameters_Base::ResetMatrix(), CParameters_Base::ResetPattern(), CParameters_Base::ResetSc_match(), and CParameters_Base::ResetSc_mismatch().
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Reset the whole object.
Definition at line 50 of file Statistics_.cpp.
References CStatistics_Base::ResetDb_len(), CStatistics_Base::ResetDb_num(), CStatistics_Base::ResetEff_space(), CStatistics_Base::ResetEntropy(), CStatistics_Base::ResetHsp_len(), CStatistics_Base::ResetKappa(), and CStatistics_Base::ResetLambda().
void CHit_Base::ResetAccession | ( | void | ) |
Reset Accession data member.
Definition at line 63 of file Hit_.cpp.
References CHit_Base::m_Accession, and CHit_Base::m_set_State.
Referenced by CHit_Base::Reset().
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Reset Align_len data member.
Definition at line 1658 of file Hsp_.hpp.
References CHsp_Base::m_Align_len, and CHsp_Base::m_set_State.
Referenced by CHsp_Base::Reset().
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Reset Bit_score data member.
Definition at line 1000 of file Hsp_.hpp.
References CHsp_Base::m_Bit_score, and CHsp_Base::m_set_State.
Referenced by CHsp_Base::Reset().
void CBlastOutput_Base::ResetDb | ( | void | ) |
Reset Db data member.
Definition at line 71 of file BlastOutput_.cpp.
References CBlastOutput_Base::m_Db, and CBlastOutput_Base::m_set_State.
Referenced by CBlastOutput_Base::Reset().
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Reset Db_len data member.
Definition at line 460 of file Statistics_.hpp.
References CStatistics_Base::m_Db_len, and CStatistics_Base::m_set_State.
Referenced by CStatistics_Base::Reset().
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Reset Db_num data member.
Definition at line 413 of file Statistics_.hpp.
References CStatistics_Base::m_Db_num, and CStatistics_Base::m_set_State.
Referenced by CStatistics_Base::Reset().
void CHit_Base::ResetDef | ( | void | ) |
Reset Def data member.
Definition at line 57 of file Hit_.cpp.
References CHit_Base::m_Def, and CHit_Base::m_set_State.
Referenced by CHit_Base::Reset().
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Reset Density data member.
Definition at line 1705 of file Hsp_.hpp.
References CHsp_Base::m_Density, and CHsp_Base::m_set_State.
Referenced by CHsp_Base::Reset().
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Reset Eff_space data member.
Definition at line 554 of file Statistics_.hpp.
References CStatistics_Base::m_Eff_space, and CStatistics_Base::m_set_State.
Referenced by CStatistics_Base::Reset().
void CParameters_Base::ResetEntrez_query | ( | void | ) |
Reset Entrez_query data member.
Definition at line 68 of file Parameters_.cpp.
References CParameters_Base::m_Entrez_query, and CParameters_Base::m_set_State.
Referenced by CParameters_Base::Reset().
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Reset Entropy data member.
Definition at line 695 of file Statistics_.hpp.
References CStatistics_Base::m_Entropy, and CStatistics_Base::m_set_State.
Referenced by CStatistics_Base::Reset().
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Reset Evalue data member.
Definition at line 1094 of file Hsp_.hpp.
References CHsp_Base::m_Evalue, and CHsp_Base::m_set_State.
Referenced by CHsp_Base::Reset().
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Reset Expect data member.
Definition at line 591 of file Parameters_.hpp.
References CParameters_Base::m_Expect, and CParameters_Base::m_set_State.
Referenced by CParameters_Base::Reset().
void CParameters_Base::ResetFilter | ( | void | ) |
Reset Filter data member.
Definition at line 56 of file Parameters_.cpp.
References CParameters_Base::m_Filter, and CParameters_Base::m_set_State.
Referenced by CParameters_Base::Reset().
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Reset Gap_extend data member.
Definition at line 826 of file Parameters_.hpp.
References CParameters_Base::m_Gap_extend, and CParameters_Base::m_set_State.
Referenced by CParameters_Base::Reset().
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Reset Gap_open data member.
Definition at line 779 of file Parameters_.hpp.
References CParameters_Base::m_Gap_open, and CParameters_Base::m_set_State.
Referenced by CParameters_Base::Reset().
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Reset Gaps data member.
Definition at line 1611 of file Hsp_.hpp.
References CHsp_Base::m_Gaps, and CHsp_Base::m_set_State.
Referenced by CHsp_Base::Reset().
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Reset Hit_frame data member.
Definition at line 1470 of file Hsp_.hpp.
References CHsp_Base::m_Hit_frame, and CHsp_Base::m_set_State.
Referenced by CHsp_Base::Reset().
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Reset Hit_from data member.
Definition at line 1235 of file Hsp_.hpp.
References CHsp_Base::m_Hit_from, and CHsp_Base::m_set_State.
Referenced by CHsp_Base::Reset().
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Reset Hit_to data member.
Definition at line 1282 of file Hsp_.hpp.
References CHsp_Base::m_Hit_to, and CHsp_Base::m_set_State.
Referenced by CHsp_Base::Reset().
void CIteration_Base::ResetHits | ( | void | ) |
Reset Hits data member.
Definition at line 64 of file Iteration_.cpp.
References CIteration_Base::m_Hits, and CIteration_Base::m_set_State.
Referenced by CIteration_Base::Reset().
void CHsp_Base::ResetHseq | ( | void | ) |
Reset Hseq data member.
Definition at line 56 of file Hsp_.cpp.
References CHsp_Base::m_Hseq, and CHsp_Base::m_set_State.
Referenced by CHsp_Base::Reset().
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Reset Hsp_len data member.
Definition at line 507 of file Statistics_.hpp.
References CStatistics_Base::m_Hsp_len, and CStatistics_Base::m_set_State.
Referenced by CStatistics_Base::Reset().
void CHit_Base::ResetHsps | ( | void | ) |
Reset Hsps data member.
Definition at line 69 of file Hit_.cpp.
References CHit_Base::m_Hsps, and CHit_Base::m_set_State.
Referenced by CHit_Base::Reset().
void CHit_Base::ResetId | ( | void | ) |
Reset Id data member.
Definition at line 51 of file Hit_.cpp.
References CHit_Base::m_Id, and CHit_Base::m_set_State.
Referenced by CHit_Base::Reset().
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Reset Identity data member.
Definition at line 1517 of file Hsp_.hpp.
References CHsp_Base::m_Identity, and CHsp_Base::m_set_State.
Referenced by CHsp_Base::Reset().
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Reset Include data member.
Definition at line 638 of file Parameters_.hpp.
References CParameters_Base::m_Include, and CParameters_Base::m_set_State.
Referenced by CParameters_Base::Reset().
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Reset Iter_num data member.
Definition at line 420 of file Iteration_.hpp.
References CIteration_Base::m_Iter_num, and CIteration_Base::m_set_State.
Referenced by CIteration_Base::Reset().
void CBlastOutput_Base::ResetIterations | ( | void | ) |
Reset Iterations data member.
Definition at line 109 of file BlastOutput_.cpp.
References CBlastOutput_Base::m_Iterations, and CBlastOutput_Base::m_set_State.
Referenced by CBlastOutput_Base::Reset().
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Reset Kappa data member.
Definition at line 601 of file Statistics_.hpp.
References CStatistics_Base::m_Kappa, and CStatistics_Base::m_set_State.
Referenced by CStatistics_Base::Reset().
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Reset Lambda data member.
Definition at line 648 of file Statistics_.hpp.
References CStatistics_Base::m_Lambda, and CStatistics_Base::m_set_State.
Referenced by CStatistics_Base::Reset().
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Reset Len data member.
Definition at line 566 of file Hit_.hpp.
References CHit_Base::m_Len, and CHit_Base::m_set_State.
Referenced by CHit_Base::Reset().
BEGIN_blastxml2_SCOPE void CParameters_Base::ResetMatrix | ( | void | ) |
Reset Matrix data member.
Definition at line 50 of file Parameters_.cpp.
References CParameters_Base::m_Matrix, and CParameters_Base::m_set_State.
Referenced by CParameters_Base::Reset().
void CBlastOutput_Base::ResetMbstat | ( | void | ) |
Reset Mbstat data member.
Definition at line 115 of file BlastOutput_.cpp.
References CBlastOutput_Base::m_Mbstat.
Referenced by CBlastOutput_Base::Reset().
void CIteration_Base::ResetMessage | ( | void | ) |
Reset Message data member.
Definition at line 87 of file Iteration_.cpp.
References CIteration_Base::m_Message, and CIteration_Base::m_set_State.
Referenced by CIteration_Base::Reset().
void CHsp_Base::ResetMidline | ( | void | ) |
Reset Midline data member.
Definition at line 62 of file Hsp_.cpp.
References CHsp_Base::m_Midline, and CHsp_Base::m_set_State.
Referenced by CHsp_Base::Reset().
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Reset Num data member.
Definition at line 378 of file Hit_.hpp.
References CHit_Base::m_Num, and CHit_Base::m_set_State.
Referenced by CHit_Base::Reset().
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Reset Num data member.
Definition at line 953 of file Hsp_.hpp.
References CHsp_Base::m_Num, and CHsp_Base::m_set_State.
Referenced by CHsp_Base::Reset().
void CBlastOutput_Base::ResetParam | ( | void | ) |
Reset Param data member.
Definition at line 95 of file BlastOutput_.cpp.
References CBlastOutput_Base::m_Param.
Referenced by CBlastOutput_Base::CBlastOutput_Base(), CBlastOutput_Base::GetParam(), CBlastOutput_Base::Reset(), and CBlastOutput_Base::SetParam().
void CParameters_Base::ResetPattern | ( | void | ) |
Reset Pattern data member.
Definition at line 62 of file Parameters_.cpp.
References CParameters_Base::m_Pattern, and CParameters_Base::m_set_State.
Referenced by CParameters_Base::Reset().
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Reset Pattern_from data member.
Definition at line 1329 of file Hsp_.hpp.
References CHsp_Base::m_Pattern_from, and CHsp_Base::m_set_State.
Referenced by CHsp_Base::Reset().
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Reset Pattern_to data member.
Definition at line 1376 of file Hsp_.hpp.
References CHsp_Base::m_Pattern_to, and CHsp_Base::m_set_State.
Referenced by CHsp_Base::Reset().
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Reset Positive data member.
Definition at line 1564 of file Hsp_.hpp.
References CHsp_Base::m_Positive, and CHsp_Base::m_set_State.
Referenced by CHsp_Base::Reset().
void CBlastOutput_Base::ResetProgram | ( | void | ) |
Reset Program data member.
Definition at line 53 of file BlastOutput_.cpp.
References CBlastOutput_Base::m_Program, and CBlastOutput_Base::m_set_State.
Referenced by CBlastOutput_Base::Reset().
void CHsp_Base::ResetQseq | ( | void | ) |
Reset Qseq data member.
Definition at line 50 of file Hsp_.cpp.
References CHsp_Base::m_Qseq, and CHsp_Base::m_set_State.
Referenced by CHsp_Base::Reset().
void CBlastOutput_Base::ResetQuery_def | ( | void | ) |
Reset Query_def data member.
Definition at line 83 of file BlastOutput_.cpp.
References CBlastOutput_Base::m_Query_def, and CBlastOutput_Base::m_set_State.
Referenced by CBlastOutput_Base::Reset().
void CIteration_Base::ResetQuery_def | ( | void | ) |
Reset Query_def data member.
Definition at line 58 of file Iteration_.cpp.
References CIteration_Base::m_Query_def, and CIteration_Base::m_set_State.
Referenced by CIteration_Base::Reset().
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Reset Query_frame data member.
Definition at line 1423 of file Hsp_.hpp.
References CHsp_Base::m_Query_frame, and CHsp_Base::m_set_State.
Referenced by CHsp_Base::Reset().
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Reset Query_from data member.
Definition at line 1141 of file Hsp_.hpp.
References CHsp_Base::m_Query_from, and CHsp_Base::m_set_State.
Referenced by CHsp_Base::Reset().
void CBlastOutput_Base::ResetQuery_ID | ( | void | ) |
Reset Query_ID data member.
Definition at line 77 of file BlastOutput_.cpp.
References CBlastOutput_Base::m_Query_ID, and CBlastOutput_Base::m_set_State.
Referenced by CBlastOutput_Base::Reset().
void CIteration_Base::ResetQuery_ID | ( | void | ) |
Reset Query_ID data member.
Definition at line 52 of file Iteration_.cpp.
References CIteration_Base::m_Query_ID, and CIteration_Base::m_set_State.
Referenced by CIteration_Base::Reset().
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Reset Query_len data member.
Definition at line 870 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_Query_len, and CBlastOutput_Base::m_set_State.
Referenced by CBlastOutput_Base::Reset().
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Reset Query_len data member.
Definition at line 561 of file Iteration_.hpp.
References CIteration_Base::m_Query_len, and CIteration_Base::m_set_State.
Referenced by CIteration_Base::Reset().
void CBlastOutput_Base::ResetQuery_seq | ( | void | ) |
Reset Query_seq data member.
Definition at line 89 of file BlastOutput_.cpp.
References CBlastOutput_Base::m_Query_seq, and CBlastOutput_Base::m_set_State.
Referenced by CBlastOutput_Base::Reset().
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Reset Query_to data member.
Definition at line 1188 of file Hsp_.hpp.
References CHsp_Base::m_Query_to, and CHsp_Base::m_set_State.
Referenced by CHsp_Base::Reset().
void CBlastOutput_Base::ResetReference | ( | void | ) |
Reset Reference data member.
Definition at line 65 of file BlastOutput_.cpp.
References CBlastOutput_Base::m_Reference, and CBlastOutput_Base::m_set_State.
Referenced by CBlastOutput_Base::Reset().
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Reset Sc_match data member.
Definition at line 685 of file Parameters_.hpp.
References CParameters_Base::m_Sc_match, and CParameters_Base::m_set_State.
Referenced by CParameters_Base::Reset().
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Reset Sc_mismatch data member.
Definition at line 732 of file Parameters_.hpp.
References CParameters_Base::m_Sc_mismatch, and CParameters_Base::m_set_State.
Referenced by CParameters_Base::Reset().
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Reset Score data member.
Definition at line 1047 of file Hsp_.hpp.
References CHsp_Base::m_Score, and CHsp_Base::m_set_State.
Referenced by CHsp_Base::Reset().
void CIteration_Base::ResetStat | ( | void | ) |
Reset Stat data member.
Definition at line 70 of file Iteration_.cpp.
References CIteration_Base::m_Stat.
Referenced by CIteration_Base::Reset().
void CBlastOutput_Base::ResetVersion | ( | void | ) |
Reset Version data member.
Definition at line 59 of file BlastOutput_.cpp.
References CBlastOutput_Base::m_set_State, and CBlastOutput_Base::m_Version.
Referenced by CBlastOutput_Base::Reset().
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Assign a value to Accession data member.
value | Value to assign |
Definition at line 528 of file Hit_.hpp.
References CHit_Base::m_Accession, CHit_Base::m_set_State, and value.
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Definition at line 535 of file Hit_.hpp.
References CHit_Base::m_Accession, CHit_Base::m_set_State, and value.
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Assign a value to Accession data member.
Definition at line 542 of file Hit_.hpp.
References CHit_Base::IsSetAccession(), CHit_Base::m_Accession, CHit_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Align_len data member.
value | Value to assign |
Definition at line 1674 of file Hsp_.hpp.
References CHsp_Base::m_Align_len, CHsp_Base::m_set_State, and value.
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Assign a value to Align_len data member.
Definition at line 1681 of file Hsp_.hpp.
References CHsp_Base::IsSetAlign_len(), CHsp_Base::m_Align_len, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Bit_score data member.
value | Value to assign |
Definition at line 1016 of file Hsp_.hpp.
References CHsp_Base::m_Bit_score, CHsp_Base::m_set_State, and value.
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Assign a value to Bit_score data member.
Definition at line 1023 of file Hsp_.hpp.
References CHsp_Base::IsSetBit_score(), CHsp_Base::m_Bit_score, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().
Assign a value to Db data member.
value | Value to assign |
Definition at line 738 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_Db, CBlastOutput_Base::m_set_State, and value.
Referenced by BlastXML_FormatReport().
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Definition at line 745 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_Db, CBlastOutput_Base::m_set_State, and value.
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Assign a value to Db data member.
Definition at line 752 of file BlastOutput_.hpp.
References CBlastOutput_Base::IsSetDb(), CBlastOutput_Base::m_Db, CBlastOutput_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Db_len data member.
value | Value to assign |
Definition at line 476 of file Statistics_.hpp.
References CStatistics_Base::m_Db_len, CStatistics_Base::m_set_State, and value.
Referenced by s_BlastXMLGetStatistics().
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Assign a value to Db_len data member.
Definition at line 483 of file Statistics_.hpp.
References CStatistics_Base::IsSetDb_len(), CStatistics_Base::m_Db_len, CStatistics_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Db_num data member.
value | Value to assign |
Definition at line 429 of file Statistics_.hpp.
References CStatistics_Base::m_Db_num, CStatistics_Base::m_set_State, and value.
Referenced by s_BlastXMLGetStatistics().
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Assign a value to Db_num data member.
Definition at line 436 of file Statistics_.hpp.
References CStatistics_Base::IsSetDb_num(), CStatistics_Base::m_Db_num, CStatistics_Base::m_set_State, and CSerialObject::UnassignedByte().
Assign a value to Def data member.
value | Value to assign |
Definition at line 481 of file Hit_.hpp.
References CHit_Base::m_Def, CHit_Base::m_set_State, and value.
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Definition at line 488 of file Hit_.hpp.
References CHit_Base::m_Def, CHit_Base::m_set_State, and value.
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Assign a value to Def data member.
Definition at line 495 of file Hit_.hpp.
References CHit_Base::IsSetDef(), CHit_Base::m_Def, CHit_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Density data member.
value | Value to assign |
Definition at line 1721 of file Hsp_.hpp.
References CHsp_Base::m_Density, CHsp_Base::m_set_State, and value.
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Assign a value to Density data member.
Definition at line 1728 of file Hsp_.hpp.
References CHsp_Base::IsSetDensity(), CHsp_Base::m_Density, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Eff_space data member.
value | Value to assign |
Definition at line 570 of file Statistics_.hpp.
References CStatistics_Base::m_Eff_space, CStatistics_Base::m_set_State, and value.
Referenced by s_BlastXMLGetStatistics().
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Assign a value to Eff_space data member.
Definition at line 577 of file Statistics_.hpp.
References CStatistics_Base::IsSetEff_space(), CStatistics_Base::m_Eff_space, CStatistics_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Entrez_query data member.
value | Value to assign |
Definition at line 976 of file Parameters_.hpp.
References CParameters_Base::m_Entrez_query, CParameters_Base::m_set_State, and value.
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inline |
Definition at line 983 of file Parameters_.hpp.
References CParameters_Base::m_Entrez_query, CParameters_Base::m_set_State, and value.
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Assign a value to Entrez_query data member.
Definition at line 990 of file Parameters_.hpp.
References CParameters_Base::IsSetEntrez_query(), CParameters_Base::m_Entrez_query, CParameters_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Entropy data member.
value | Value to assign |
Definition at line 711 of file Statistics_.hpp.
References CStatistics_Base::m_Entropy, CStatistics_Base::m_set_State, and value.
Referenced by s_BlastXMLGetStatistics().
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inline |
Assign a value to Entropy data member.
Definition at line 718 of file Statistics_.hpp.
References CStatistics_Base::IsSetEntropy(), CStatistics_Base::m_Entropy, CStatistics_Base::m_set_State, and CSerialObject::UnassignedByte().
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inline |
Assign a value to Evalue data member.
value | Value to assign |
Definition at line 1110 of file Hsp_.hpp.
References CHsp_Base::m_Evalue, CHsp_Base::m_set_State, and value.
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inline |
Assign a value to Evalue data member.
Definition at line 1117 of file Hsp_.hpp.
References CHsp_Base::IsSetEvalue(), CHsp_Base::m_Evalue, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().
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inline |
Assign a value to Expect data member.
value | Value to assign |
Definition at line 607 of file Parameters_.hpp.
References CParameters_Base::m_Expect, CParameters_Base::m_set_State, and value.
Referenced by s_SetBlastXMLParameters().
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Assign a value to Expect data member.
Definition at line 614 of file Parameters_.hpp.
References CParameters_Base::IsSetExpect(), CParameters_Base::m_Expect, CParameters_Base::m_set_State, and CSerialObject::UnassignedByte().
Assign a value to Filter data member.
value | Value to assign |
Definition at line 882 of file Parameters_.hpp.
References CParameters_Base::m_Filter, CParameters_Base::m_set_State, and value.
Referenced by s_SetBlastXMLParameters().
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inline |
Definition at line 889 of file Parameters_.hpp.
References CParameters_Base::m_Filter, CParameters_Base::m_set_State, and value.
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Assign a value to Filter data member.
Definition at line 896 of file Parameters_.hpp.
References CParameters_Base::IsSetFilter(), CParameters_Base::m_Filter, CParameters_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Gap_extend data member.
value | Value to assign |
Definition at line 842 of file Parameters_.hpp.
References CParameters_Base::m_Gap_extend, CParameters_Base::m_set_State, and value.
Referenced by s_SetBlastXMLParameters().
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Assign a value to Gap_extend data member.
Definition at line 849 of file Parameters_.hpp.
References CParameters_Base::IsSetGap_extend(), CParameters_Base::m_Gap_extend, CParameters_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Gap_open data member.
value | Value to assign |
Definition at line 795 of file Parameters_.hpp.
References CParameters_Base::m_Gap_open, CParameters_Base::m_set_State, and value.
Referenced by s_SetBlastXMLParameters().
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Assign a value to Gap_open data member.
Definition at line 802 of file Parameters_.hpp.
References CParameters_Base::IsSetGap_open(), CParameters_Base::m_Gap_open, CParameters_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Gaps data member.
value | Value to assign |
Definition at line 1627 of file Hsp_.hpp.
References CHsp_Base::m_Gaps, CHsp_Base::m_set_State, and value.
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Assign a value to Gaps data member.
Definition at line 1634 of file Hsp_.hpp.
References CHsp_Base::IsSetGaps(), CHsp_Base::m_Gaps, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().
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inline |
Assign a value to Hit_frame data member.
value | Value to assign |
Definition at line 1486 of file Hsp_.hpp.
References CHsp_Base::m_Hit_frame, CHsp_Base::m_set_State, and value.
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Assign a value to Hit_frame data member.
Definition at line 1493 of file Hsp_.hpp.
References CHsp_Base::IsSetHit_frame(), CHsp_Base::m_Hit_frame, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Hit_from data member.
value | Value to assign |
Definition at line 1251 of file Hsp_.hpp.
References CHsp_Base::m_Hit_from, CHsp_Base::m_set_State, and value.
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Assign a value to Hit_from data member.
Definition at line 1258 of file Hsp_.hpp.
References CHsp_Base::IsSetHit_from(), CHsp_Base::m_Hit_from, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().
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inline |
Assign a value to Hit_to data member.
value | Value to assign |
Definition at line 1298 of file Hsp_.hpp.
References CHsp_Base::m_Hit_to, CHsp_Base::m_set_State, and value.
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Assign a value to Hit_to data member.
Definition at line 1305 of file Hsp_.hpp.
References CHsp_Base::IsSetHit_to(), CHsp_Base::m_Hit_to, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Hits data member.
Definition at line 614 of file Iteration_.hpp.
References CIteration_Base::m_Hits, and CIteration_Base::m_set_State.
Assign a value to Hseq data member.
value | Value to assign |
Definition at line 1808 of file Hsp_.hpp.
References CHsp_Base::m_Hseq, CHsp_Base::m_set_State, and value.
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inline |
Definition at line 1815 of file Hsp_.hpp.
References CHsp_Base::m_Hseq, CHsp_Base::m_set_State, and value.
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Assign a value to Hseq data member.
Definition at line 1822 of file Hsp_.hpp.
References CHsp_Base::IsSetHseq(), CHsp_Base::m_Hseq, CHsp_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Hsp_len data member.
value | Value to assign |
Definition at line 523 of file Statistics_.hpp.
References CStatistics_Base::m_Hsp_len, CStatistics_Base::m_set_State, and value.
Referenced by s_BlastXMLGetStatistics().
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inline |
Assign a value to Hsp_len data member.
Definition at line 530 of file Statistics_.hpp.
References CStatistics_Base::IsSetHsp_len(), CStatistics_Base::m_Hsp_len, CStatistics_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Hsps data member.
Definition at line 619 of file Hit_.hpp.
References CHit_Base::m_Hsps, and CHit_Base::m_set_State.
Assign a value to Id data member.
value | Value to assign |
Definition at line 434 of file Hit_.hpp.
References CHit_Base::m_Id, CHit_Base::m_set_State, and value.
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inline |
Definition at line 441 of file Hit_.hpp.
References CHit_Base::m_Id, CHit_Base::m_set_State, and value.
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Assign a value to Id data member.
Definition at line 448 of file Hit_.hpp.
References CHit_Base::IsSetId(), CHit_Base::m_Id, CHit_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Identity data member.
value | Value to assign |
Definition at line 1533 of file Hsp_.hpp.
References CHsp_Base::m_Identity, CHsp_Base::m_set_State, and value.
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inline |
Assign a value to Identity data member.
Definition at line 1540 of file Hsp_.hpp.
References CHsp_Base::IsSetIdentity(), CHsp_Base::m_Identity, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Include data member.
value | Value to assign |
Definition at line 654 of file Parameters_.hpp.
References CParameters_Base::m_Include, CParameters_Base::m_set_State, and value.
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Assign a value to Include data member.
Definition at line 661 of file Parameters_.hpp.
References CParameters_Base::IsSetInclude(), CParameters_Base::m_Include, CParameters_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Iter_num data member.
value | Value to assign |
Definition at line 436 of file Iteration_.hpp.
References CIteration_Base::m_Iter_num, CIteration_Base::m_set_State, and value.
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Assign a value to Iter_num data member.
Definition at line 443 of file Iteration_.hpp.
References CIteration_Base::IsSetIter_num(), CIteration_Base::m_Iter_num, CIteration_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Iterations data member.
Definition at line 1000 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_Iterations, and CBlastOutput_Base::m_set_State.
Referenced by s_BlastXMLAddIteration().
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Assign a value to Kappa data member.
value | Value to assign |
Definition at line 617 of file Statistics_.hpp.
References CStatistics_Base::m_Kappa, CStatistics_Base::m_set_State, and value.
Referenced by s_BlastXMLGetStatistics().
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Assign a value to Kappa data member.
Definition at line 624 of file Statistics_.hpp.
References CStatistics_Base::IsSetKappa(), CStatistics_Base::m_Kappa, CStatistics_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Lambda data member.
value | Value to assign |
Definition at line 664 of file Statistics_.hpp.
References CStatistics_Base::m_Lambda, CStatistics_Base::m_set_State, and value.
Referenced by s_BlastXMLGetStatistics().
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inline |
Assign a value to Lambda data member.
Definition at line 671 of file Statistics_.hpp.
References CStatistics_Base::IsSetLambda(), CStatistics_Base::m_Lambda, CStatistics_Base::m_set_State, and CSerialObject::UnassignedByte().
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inline |
Assign a value to Len data member.
value | Value to assign |
Definition at line 582 of file Hit_.hpp.
References CHit_Base::m_Len, CHit_Base::m_set_State, and value.
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inline |
Assign a value to Len data member.
Definition at line 589 of file Hit_.hpp.
References CHit_Base::IsSetLen(), CHit_Base::m_Len, CHit_Base::m_set_State, and CSerialObject::UnassignedByte().
Assign a value to Matrix data member.
value | Value to assign |
Definition at line 553 of file Parameters_.hpp.
References CParameters_Base::m_Matrix, CParameters_Base::m_set_State, and value.
Referenced by s_SetBlastXMLParameters().
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inline |
Definition at line 560 of file Parameters_.hpp.
References CParameters_Base::m_Matrix, CParameters_Base::m_set_State, and value.
|
inline |
Assign a value to Matrix data member.
Definition at line 567 of file Parameters_.hpp.
References CParameters_Base::IsSetMatrix(), CParameters_Base::m_Matrix, CParameters_Base::m_set_State, and CSerialObject::UnassignedString().
void CBlastOutput_Base::SetMbstat | ( | CBlastOutput_Base::TMbstat & | value | ) |
Assign a value to Mbstat data member.
value | Reference to value. |
Definition at line 120 of file BlastOutput_.cpp.
References CBlastOutput_Base::m_Mbstat, and value.
CBlastOutput_Base::TMbstat & CBlastOutput_Base::SetMbstat | ( | void | ) |
Assign a value to Mbstat data member.
Definition at line 125 of file BlastOutput_.cpp.
References CBlastOutput_Base::m_Mbstat.
Assign a value to Message data member.
value | Value to assign |
Definition at line 663 of file Iteration_.hpp.
References CIteration_Base::m_Message, CIteration_Base::m_set_State, and value.
|
inline |
Definition at line 670 of file Iteration_.hpp.
References CIteration_Base::m_Message, CIteration_Base::m_set_State, and value.
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inline |
Assign a value to Message data member.
Definition at line 677 of file Iteration_.hpp.
References CIteration_Base::IsSetMessage(), CIteration_Base::m_Message, CIteration_Base::m_set_State, and CSerialObject::UnassignedString().
Assign a value to Midline data member.
value | Value to assign |
Definition at line 1855 of file Hsp_.hpp.
References CHsp_Base::m_Midline, CHsp_Base::m_set_State, and value.
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inline |
Definition at line 1862 of file Hsp_.hpp.
References CHsp_Base::m_Midline, CHsp_Base::m_set_State, and value.
|
inline |
Assign a value to Midline data member.
Definition at line 1869 of file Hsp_.hpp.
References CHsp_Base::IsSetMidline(), CHsp_Base::m_Midline, CHsp_Base::m_set_State, and CSerialObject::UnassignedString().
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inline |
Assign a value to Num data member.
value | Value to assign |
Definition at line 394 of file Hit_.hpp.
References CHit_Base::m_Num, CHit_Base::m_set_State, and value.
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inline |
Assign a value to Num data member.
value | Value to assign |
Definition at line 969 of file Hsp_.hpp.
References CHsp_Base::m_Num, CHsp_Base::m_set_State, and value.
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inline |
Assign a value to Num data member.
Definition at line 401 of file Hit_.hpp.
References CHit_Base::IsSetNum(), CHit_Base::m_Num, CHit_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Num data member.
Definition at line 976 of file Hsp_.hpp.
References CHsp_Base::IsSetNum(), CHsp_Base::m_Num, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().
void CBlastOutput_Base::SetParam | ( | CBlastOutput_Base::TParam & | value | ) |
Assign a value to Param data member.
value | Reference to value. |
Definition at line 104 of file BlastOutput_.cpp.
References CBlastOutput_Base::m_Param, and value.
Referenced by s_SetBlastXMLParameters().
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inline |
Assign a value to Param data member.
Definition at line 973 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_Param, and CBlastOutput_Base::ResetParam().
Assign a value to Pattern data member.
value | Value to assign |
Definition at line 929 of file Parameters_.hpp.
References CParameters_Base::m_Pattern, CParameters_Base::m_set_State, and value.
Referenced by s_SetBlastXMLParameters().
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inline |
Definition at line 936 of file Parameters_.hpp.
References CParameters_Base::m_Pattern, CParameters_Base::m_set_State, and value.
|
inline |
Assign a value to Pattern data member.
Definition at line 943 of file Parameters_.hpp.
References CParameters_Base::IsSetPattern(), CParameters_Base::m_Pattern, CParameters_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Pattern_from data member.
value | Value to assign |
Definition at line 1345 of file Hsp_.hpp.
References CHsp_Base::m_Pattern_from, CHsp_Base::m_set_State, and value.
|
inline |
Assign a value to Pattern_from data member.
Definition at line 1352 of file Hsp_.hpp.
References CHsp_Base::IsSetPattern_from(), CHsp_Base::m_Pattern_from, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().
|
inline |
Assign a value to Pattern_to data member.
value | Value to assign |
Definition at line 1392 of file Hsp_.hpp.
References CHsp_Base::m_Pattern_to, CHsp_Base::m_set_State, and value.
|
inline |
Assign a value to Pattern_to data member.
Definition at line 1399 of file Hsp_.hpp.
References CHsp_Base::IsSetPattern_to(), CHsp_Base::m_Pattern_to, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Positive data member.
value | Value to assign |
Definition at line 1580 of file Hsp_.hpp.
References CHsp_Base::m_Positive, CHsp_Base::m_set_State, and value.
|
inline |
Assign a value to Positive data member.
Definition at line 1587 of file Hsp_.hpp.
References CHsp_Base::IsSetPositive(), CHsp_Base::m_Positive, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().
Assign a value to Program data member.
value | Value to assign |
Definition at line 597 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_Program, CBlastOutput_Base::m_set_State, and value.
Referenced by BlastXML_FormatReport().
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inline |
Definition at line 604 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_Program, CBlastOutput_Base::m_set_State, and value.
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inline |
Assign a value to Program data member.
Definition at line 611 of file BlastOutput_.hpp.
References CBlastOutput_Base::IsSetProgram(), CBlastOutput_Base::m_Program, CBlastOutput_Base::m_set_State, and CSerialObject::UnassignedString().
Assign a value to Qseq data member.
value | Value to assign |
Definition at line 1761 of file Hsp_.hpp.
References CHsp_Base::m_Qseq, CHsp_Base::m_set_State, and value.
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Definition at line 1768 of file Hsp_.hpp.
References CHsp_Base::m_Qseq, CHsp_Base::m_set_State, and value.
|
inline |
Assign a value to Qseq data member.
Definition at line 1775 of file Hsp_.hpp.
References CHsp_Base::IsSetQseq(), CHsp_Base::m_Qseq, CHsp_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Query_def data member.
value | Value to assign |
Definition at line 832 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_Query_def, CBlastOutput_Base::m_set_State, and value.
Referenced by BlastXML_FormatReport().
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Assign a value to Query_def data member.
value | Value to assign |
Definition at line 523 of file Iteration_.hpp.
References CIteration_Base::m_Query_def, CIteration_Base::m_set_State, and value.
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Definition at line 839 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_Query_def, CBlastOutput_Base::m_set_State, and value.
|
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Definition at line 530 of file Iteration_.hpp.
References CIteration_Base::m_Query_def, CIteration_Base::m_set_State, and value.
|
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Assign a value to Query_def data member.
Definition at line 846 of file BlastOutput_.hpp.
References CBlastOutput_Base::IsSetQuery_def(), CBlastOutput_Base::m_Query_def, CBlastOutput_Base::m_set_State, and CSerialObject::UnassignedString().
|
inline |
Assign a value to Query_def data member.
Definition at line 537 of file Iteration_.hpp.
References CIteration_Base::IsSetQuery_def(), CIteration_Base::m_Query_def, CIteration_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Query_frame data member.
value | Value to assign |
Definition at line 1439 of file Hsp_.hpp.
References CHsp_Base::m_Query_frame, CHsp_Base::m_set_State, and value.
|
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Assign a value to Query_frame data member.
Definition at line 1446 of file Hsp_.hpp.
References CHsp_Base::IsSetQuery_frame(), CHsp_Base::m_Query_frame, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().
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inline |
Assign a value to Query_from data member.
value | Value to assign |
Definition at line 1157 of file Hsp_.hpp.
References CHsp_Base::m_Query_from, CHsp_Base::m_set_State, and value.
|
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Assign a value to Query_from data member.
Definition at line 1164 of file Hsp_.hpp.
References CHsp_Base::IsSetQuery_from(), CHsp_Base::m_Query_from, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().
Assign a value to Query_ID data member.
value | Value to assign |
Definition at line 785 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_Query_ID, CBlastOutput_Base::m_set_State, and value.
Referenced by BlastXML_FormatReport().
Assign a value to Query_ID data member.
value | Value to assign |
Definition at line 476 of file Iteration_.hpp.
References CIteration_Base::m_Query_ID, CIteration_Base::m_set_State, and value.
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Definition at line 792 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_Query_ID, CBlastOutput_Base::m_set_State, and value.
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Definition at line 483 of file Iteration_.hpp.
References CIteration_Base::m_Query_ID, CIteration_Base::m_set_State, and value.
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Assign a value to Query_ID data member.
Definition at line 799 of file BlastOutput_.hpp.
References CBlastOutput_Base::IsSetQuery_ID(), CBlastOutput_Base::m_Query_ID, CBlastOutput_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Query_ID data member.
Definition at line 490 of file Iteration_.hpp.
References CIteration_Base::IsSetQuery_ID(), CIteration_Base::m_Query_ID, CIteration_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Query_len data member.
value | Value to assign |
Definition at line 886 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_Query_len, CBlastOutput_Base::m_set_State, and value.
Referenced by BlastXML_FormatReport().
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Assign a value to Query_len data member.
value | Value to assign |
Definition at line 577 of file Iteration_.hpp.
References CIteration_Base::m_Query_len, CIteration_Base::m_set_State, and value.
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Assign a value to Query_len data member.
Definition at line 893 of file BlastOutput_.hpp.
References CBlastOutput_Base::IsSetQuery_len(), CBlastOutput_Base::m_Query_len, CBlastOutput_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Query_len data member.
Definition at line 584 of file Iteration_.hpp.
References CIteration_Base::IsSetQuery_len(), CIteration_Base::m_Query_len, CIteration_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Query_seq data member.
value | Value to assign |
Definition at line 926 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_Query_seq, CBlastOutput_Base::m_set_State, and value.
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Definition at line 933 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_Query_seq, CBlastOutput_Base::m_set_State, and value.
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Assign a value to Query_seq data member.
Definition at line 940 of file BlastOutput_.hpp.
References CBlastOutput_Base::IsSetQuery_seq(), CBlastOutput_Base::m_Query_seq, CBlastOutput_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Query_to data member.
value | Value to assign |
Definition at line 1204 of file Hsp_.hpp.
References CHsp_Base::m_Query_to, CHsp_Base::m_set_State, and value.
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Assign a value to Query_to data member.
Definition at line 1211 of file Hsp_.hpp.
References CHsp_Base::IsSetQuery_to(), CHsp_Base::m_Query_to, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Reference data member.
value | Value to assign |
Definition at line 691 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_Reference, CBlastOutput_Base::m_set_State, and value.
Referenced by BlastXML_FormatReport().
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Definition at line 698 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_Reference, CBlastOutput_Base::m_set_State, and value.
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Assign a value to Reference data member.
Definition at line 705 of file BlastOutput_.hpp.
References CBlastOutput_Base::IsSetReference(), CBlastOutput_Base::m_Reference, CBlastOutput_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Sc_match data member.
value | Value to assign |
Definition at line 701 of file Parameters_.hpp.
References CParameters_Base::m_Sc_match, CParameters_Base::m_set_State, and value.
Referenced by s_SetBlastXMLParameters().
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inline |
Assign a value to Sc_match data member.
Definition at line 708 of file Parameters_.hpp.
References CParameters_Base::IsSetSc_match(), CParameters_Base::m_Sc_match, CParameters_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Sc_mismatch data member.
value | Value to assign |
Definition at line 748 of file Parameters_.hpp.
References CParameters_Base::m_Sc_mismatch, CParameters_Base::m_set_State, and value.
Referenced by s_SetBlastXMLParameters().
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Assign a value to Sc_mismatch data member.
Definition at line 755 of file Parameters_.hpp.
References CParameters_Base::IsSetSc_mismatch(), CParameters_Base::m_Sc_mismatch, CParameters_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Score data member.
value | Value to assign |
Definition at line 1063 of file Hsp_.hpp.
References CHsp_Base::m_Score, CHsp_Base::m_set_State, and value.
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Assign a value to Score data member.
Definition at line 1070 of file Hsp_.hpp.
References CHsp_Base::IsSetScore(), CHsp_Base::m_Score, CHsp_Base::m_set_State, and CSerialObject::UnassignedByte().
void CIteration_Base::SetStat | ( | CIteration_Base::TStat & | value | ) |
Assign a value to Stat data member.
value | Reference to value. |
Definition at line 75 of file Iteration_.cpp.
References CIteration_Base::m_Stat, and value.
CIteration_Base::TStat & CIteration_Base::SetStat | ( | void | ) |
Assign a value to Stat data member.
Definition at line 80 of file Iteration_.cpp.
References CIteration_Base::m_Stat.
Assign a value to Version data member.
value | Value to assign |
Definition at line 644 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_set_State, CBlastOutput_Base::m_Version, and value.
Referenced by BlastXML_FormatReport().
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Definition at line 651 of file BlastOutput_.hpp.
References CBlastOutput_Base::m_set_State, CBlastOutput_Base::m_Version, and value.
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Assign a value to Version data member.
Definition at line 658 of file BlastOutput_.hpp.
References CBlastOutput_Base::IsSetVersion(), CBlastOutput_Base::m_set_State, CBlastOutput_Base::m_Version, and CSerialObject::UnassignedString().
CBlastOutput::~CBlastOutput | ( | void | ) |
Definition at line 50 of file BlastOutput.cpp.
|
virtual |
Definition at line 178 of file BlastOutput_.cpp.
CHit::~CHit | ( | void | ) |
BEGIN_blastxml2_SCOPE CHsp::~CHsp | ( | void | ) |
BEGIN_blastxml2_SCOPE CIteration::~CIteration | ( | void | ) |
Definition at line 50 of file Iteration.cpp.
|
virtual |
Definition at line 128 of file Iteration_.cpp.
BEGIN_blastxml2_SCOPE CParameters::~CParameters | ( | void | ) |
Definition at line 50 of file Parameters.cpp.
|
virtual |
Definition at line 115 of file Parameters_.cpp.
BEGIN_blastxml2_SCOPE CStatistics::~CStatistics | ( | void | ) |
Definition at line 50 of file Statistics.cpp.
|
virtual |
Definition at line 85 of file Statistics_.cpp.
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Definition at line 351 of file Hit_.hpp.
Referenced by CHit_Base::GetAccession(), CHit_Base::ResetAccession(), and CHit_Base::SetAccession().
|
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Definition at line 924 of file Hsp_.hpp.
Referenced by CHsp_Base::GetAlign_len(), CHsp_Base::ResetAlign_len(), and CHsp_Base::SetAlign_len().
|
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Definition at line 910 of file Hsp_.hpp.
Referenced by CHsp_Base::GetBit_score(), CHsp_Base::ResetBit_score(), and CHsp_Base::SetBit_score().
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Definition at line 556 of file BlastOutput_.hpp.
Referenced by CBlastOutput_Base::GetDb(), CBlastOutput_Base::ResetDb(), and CBlastOutput_Base::SetDb().
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Definition at line 383 of file Statistics_.hpp.
Referenced by CStatistics_Base::GetDb_len(), CStatistics_Base::ResetDb_len(), and CStatistics_Base::SetDb_len().
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Definition at line 382 of file Statistics_.hpp.
Referenced by CStatistics_Base::GetDb_num(), CStatistics_Base::ResetDb_num(), and CStatistics_Base::SetDb_num().
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Definition at line 350 of file Hit_.hpp.
Referenced by CHit_Base::GetDef(), CHit_Base::ResetDef(), and CHit_Base::SetDef().
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Definition at line 925 of file Hsp_.hpp.
Referenced by CHsp_Base::GetDensity(), CHsp_Base::ResetDensity(), and CHsp_Base::SetDensity().
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Definition at line 385 of file Statistics_.hpp.
Referenced by CStatistics_Base::GetEff_space(), CStatistics_Base::ResetEff_space(), and CStatistics_Base::SetEff_space().
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private |
Definition at line 519 of file Parameters_.hpp.
Referenced by CParameters_Base::GetEntrez_query(), CParameters_Base::ResetEntrez_query(), and CParameters_Base::SetEntrez_query().
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Definition at line 388 of file Statistics_.hpp.
Referenced by CStatistics_Base::GetEntropy(), CStatistics_Base::ResetEntropy(), and CStatistics_Base::SetEntropy().
|
private |
Definition at line 912 of file Hsp_.hpp.
Referenced by CHsp_Base::GetEvalue(), CHsp_Base::ResetEvalue(), and CHsp_Base::SetEvalue().
|
private |
Definition at line 511 of file Parameters_.hpp.
Referenced by CParameters_Base::GetExpect(), CParameters_Base::ResetExpect(), and CParameters_Base::SetExpect().
|
private |
Definition at line 517 of file Parameters_.hpp.
Referenced by CParameters_Base::GetFilter(), CParameters_Base::ResetFilter(), and CParameters_Base::SetFilter().
|
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Definition at line 516 of file Parameters_.hpp.
Referenced by CParameters_Base::GetGap_extend(), CParameters_Base::ResetGap_extend(), and CParameters_Base::SetGap_extend().
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Definition at line 515 of file Parameters_.hpp.
Referenced by CParameters_Base::GetGap_open(), CParameters_Base::ResetGap_open(), and CParameters_Base::SetGap_open().
|
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Definition at line 923 of file Hsp_.hpp.
Referenced by CHsp_Base::GetGaps(), CHsp_Base::ResetGaps(), and CHsp_Base::SetGaps().
|
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Definition at line 920 of file Hsp_.hpp.
Referenced by CHsp_Base::GetHit_frame(), CHsp_Base::ResetHit_frame(), and CHsp_Base::SetHit_frame().
|
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Definition at line 915 of file Hsp_.hpp.
Referenced by CHsp_Base::GetHit_from(), CHsp_Base::ResetHit_from(), and CHsp_Base::SetHit_from().
|
private |
Definition at line 916 of file Hsp_.hpp.
Referenced by CHsp_Base::GetHit_to(), CHsp_Base::ResetHit_to(), and CHsp_Base::SetHit_to().
Definition at line 393 of file Iteration_.hpp.
Referenced by CIteration_Base::GetHits(), CIteration_Base::ResetHits(), and CIteration_Base::SetHits().
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Definition at line 927 of file Hsp_.hpp.
Referenced by CHsp_Base::GetHseq(), CHsp_Base::ResetHseq(), and CHsp_Base::SetHseq().
|
private |
Definition at line 384 of file Statistics_.hpp.
Referenced by CStatistics_Base::GetHsp_len(), CStatistics_Base::ResetHsp_len(), and CStatistics_Base::SetHsp_len().
Definition at line 353 of file Hit_.hpp.
Referenced by CHit_Base::GetHsps(), CHit_Base::ResetHsps(), and CHit_Base::SetHsps().
|
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Definition at line 349 of file Hit_.hpp.
Referenced by CHit_Base::GetId(), CHit_Base::ResetId(), and CHit_Base::SetId().
|
private |
Definition at line 921 of file Hsp_.hpp.
Referenced by CHsp_Base::GetIdentity(), CHsp_Base::ResetIdentity(), and CHsp_Base::SetIdentity().
|
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Definition at line 512 of file Parameters_.hpp.
Referenced by CParameters_Base::GetInclude(), CParameters_Base::ResetInclude(), and CParameters_Base::SetInclude().
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Definition at line 389 of file Iteration_.hpp.
Referenced by CIteration_Base::GetIter_num(), CIteration_Base::ResetIter_num(), and CIteration_Base::SetIter_num().
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Definition at line 562 of file BlastOutput_.hpp.
Referenced by CBlastOutput_Base::GetIterations(), CBlastOutput_Base::ResetIterations(), and CBlastOutput_Base::SetIterations().
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Definition at line 386 of file Statistics_.hpp.
Referenced by CStatistics_Base::GetKappa(), CStatistics_Base::ResetKappa(), and CStatistics_Base::SetKappa().
|
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Definition at line 387 of file Statistics_.hpp.
Referenced by CStatistics_Base::GetLambda(), CStatistics_Base::ResetLambda(), and CStatistics_Base::SetLambda().
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Definition at line 352 of file Hit_.hpp.
Referenced by CHit_Base::GetLen(), CHit_Base::ResetLen(), and CHit_Base::SetLen().
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Definition at line 510 of file Parameters_.hpp.
Referenced by CParameters_Base::GetMatrix(), CParameters_Base::ResetMatrix(), and CParameters_Base::SetMatrix().
Definition at line 563 of file BlastOutput_.hpp.
Referenced by CBlastOutput_Base::GetMbstat(), CBlastOutput_Base::IsSetMbstat(), CBlastOutput_Base::ResetMbstat(), and CBlastOutput_Base::SetMbstat().
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Definition at line 395 of file Iteration_.hpp.
Referenced by CIteration_Base::GetMessage(), CIteration_Base::ResetMessage(), and CIteration_Base::SetMessage().
|
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Definition at line 928 of file Hsp_.hpp.
Referenced by CHsp_Base::GetMidline(), CHsp_Base::ResetMidline(), and CHsp_Base::SetMidline().
|
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Definition at line 348 of file Hit_.hpp.
Referenced by CHit_Base::GetNum(), CHit_Base::ResetNum(), and CHit_Base::SetNum().
|
private |
Definition at line 909 of file Hsp_.hpp.
Referenced by CHsp_Base::GetNum(), CHsp_Base::ResetNum(), and CHsp_Base::SetNum().
Definition at line 561 of file BlastOutput_.hpp.
Referenced by CBlastOutput_Base::GetParam(), CBlastOutput_Base::IsSetParam(), CBlastOutput_Base::ResetParam(), and CBlastOutput_Base::SetParam().
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Definition at line 518 of file Parameters_.hpp.
Referenced by CParameters_Base::GetPattern(), CParameters_Base::ResetPattern(), and CParameters_Base::SetPattern().
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Definition at line 917 of file Hsp_.hpp.
Referenced by CHsp_Base::GetPattern_from(), CHsp_Base::ResetPattern_from(), and CHsp_Base::SetPattern_from().
|
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Definition at line 918 of file Hsp_.hpp.
Referenced by CHsp_Base::GetPattern_to(), CHsp_Base::ResetPattern_to(), and CHsp_Base::SetPattern_to().
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Definition at line 922 of file Hsp_.hpp.
Referenced by CHsp_Base::GetPositive(), CHsp_Base::ResetPositive(), and CHsp_Base::SetPositive().
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Definition at line 553 of file BlastOutput_.hpp.
Referenced by CBlastOutput_Base::GetProgram(), CBlastOutput_Base::ResetProgram(), and CBlastOutput_Base::SetProgram().
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Definition at line 926 of file Hsp_.hpp.
Referenced by CHsp_Base::GetQseq(), CHsp_Base::ResetQseq(), and CHsp_Base::SetQseq().
|
private |
Definition at line 558 of file BlastOutput_.hpp.
Referenced by CBlastOutput_Base::GetQuery_def(), CBlastOutput_Base::ResetQuery_def(), and CBlastOutput_Base::SetQuery_def().
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Definition at line 391 of file Iteration_.hpp.
Referenced by CIteration_Base::GetQuery_def(), CIteration_Base::ResetQuery_def(), and CIteration_Base::SetQuery_def().
|
private |
Definition at line 919 of file Hsp_.hpp.
Referenced by CHsp_Base::GetQuery_frame(), CHsp_Base::ResetQuery_frame(), and CHsp_Base::SetQuery_frame().
|
private |
Definition at line 913 of file Hsp_.hpp.
Referenced by CHsp_Base::GetQuery_from(), CHsp_Base::ResetQuery_from(), and CHsp_Base::SetQuery_from().
|
private |
Definition at line 557 of file BlastOutput_.hpp.
Referenced by CBlastOutput_Base::GetQuery_ID(), CBlastOutput_Base::ResetQuery_ID(), and CBlastOutput_Base::SetQuery_ID().
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Definition at line 390 of file Iteration_.hpp.
Referenced by CIteration_Base::GetQuery_ID(), CIteration_Base::ResetQuery_ID(), and CIteration_Base::SetQuery_ID().
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Definition at line 559 of file BlastOutput_.hpp.
Referenced by CBlastOutput_Base::GetQuery_len(), CBlastOutput_Base::ResetQuery_len(), and CBlastOutput_Base::SetQuery_len().
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Definition at line 392 of file Iteration_.hpp.
Referenced by CIteration_Base::GetQuery_len(), CIteration_Base::ResetQuery_len(), and CIteration_Base::SetQuery_len().
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Definition at line 560 of file BlastOutput_.hpp.
Referenced by CBlastOutput_Base::GetQuery_seq(), CBlastOutput_Base::ResetQuery_seq(), and CBlastOutput_Base::SetQuery_seq().
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Definition at line 914 of file Hsp_.hpp.
Referenced by CHsp_Base::GetQuery_to(), CHsp_Base::ResetQuery_to(), and CHsp_Base::SetQuery_to().
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Definition at line 555 of file BlastOutput_.hpp.
Referenced by CBlastOutput_Base::GetReference(), CBlastOutput_Base::ResetReference(), and CBlastOutput_Base::SetReference().
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Definition at line 513 of file Parameters_.hpp.
Referenced by CParameters_Base::GetSc_match(), CParameters_Base::ResetSc_match(), and CParameters_Base::SetSc_match().
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Definition at line 514 of file Parameters_.hpp.
Referenced by CParameters_Base::GetSc_mismatch(), CParameters_Base::ResetSc_mismatch(), and CParameters_Base::SetSc_mismatch().
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Definition at line 911 of file Hsp_.hpp.
Referenced by CHsp_Base::GetScore(), CHsp_Base::ResetScore(), and CHsp_Base::SetScore().
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Definition at line 552 of file BlastOutput_.hpp.
Referenced by CBlastOutput_Base::CBlastOutput_Base(), CBlastOutput_Base::IsSetDb(), CBlastOutput_Base::IsSetIterations(), CBlastOutput_Base::IsSetProgram(), CBlastOutput_Base::IsSetQuery_def(), CBlastOutput_Base::IsSetQuery_ID(), CBlastOutput_Base::IsSetQuery_len(), CBlastOutput_Base::IsSetQuery_seq(), CBlastOutput_Base::IsSetReference(), CBlastOutput_Base::IsSetVersion(), CBlastOutput_Base::ResetDb(), CBlastOutput_Base::ResetIterations(), CBlastOutput_Base::ResetProgram(), CBlastOutput_Base::ResetQuery_def(), CBlastOutput_Base::ResetQuery_ID(), CBlastOutput_Base::ResetQuery_len(), CBlastOutput_Base::ResetQuery_seq(), CBlastOutput_Base::ResetReference(), CBlastOutput_Base::ResetVersion(), CBlastOutput_Base::SetDb(), CBlastOutput_Base::SetIterations(), CBlastOutput_Base::SetProgram(), CBlastOutput_Base::SetQuery_def(), CBlastOutput_Base::SetQuery_ID(), CBlastOutput_Base::SetQuery_len(), CBlastOutput_Base::SetQuery_seq(), CBlastOutput_Base::SetReference(), and CBlastOutput_Base::SetVersion().
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Definition at line 347 of file Hit_.hpp.
Referenced by CHit_Base::CHit_Base(), CHit_Base::IsSetAccession(), CHit_Base::IsSetDef(), CHit_Base::IsSetDescription(), CHit_Base::IsSetHsps(), CHit_Base::IsSetId(), CHit_Base::IsSetLen(), CHit_Base::IsSetNum(), CHit_Base::ResetAccession(), CHit_Base::ResetDef(), CHit_Base::ResetDescription(), CHit_Base::ResetHsps(), CHit_Base::ResetId(), CHit_Base::ResetLen(), CHit_Base::ResetNum(), CHit_Base::SetAccession(), CHit_Base::SetDef(), CHit_Base::SetDescription(), CHit_Base::SetHsps(), CHit_Base::SetId(), CHit_Base::SetLen(), and CHit_Base::SetNum().
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Definition at line 388 of file Iteration_.hpp.
Referenced by CIteration_Base::CIteration_Base(), CIteration_Base::IsSetHits(), CIteration_Base::IsSetIter_num(), CIteration_Base::IsSetMessage(), CIteration_Base::IsSetQuery_def(), CIteration_Base::IsSetQuery_ID(), CIteration_Base::IsSetQuery_len(), CIteration_Base::ResetHits(), CIteration_Base::ResetIter_num(), CIteration_Base::ResetMessage(), CIteration_Base::ResetQuery_def(), CIteration_Base::ResetQuery_ID(), CIteration_Base::ResetQuery_len(), CIteration_Base::SetHits(), CIteration_Base::SetIter_num(), CIteration_Base::SetMessage(), CIteration_Base::SetQuery_def(), CIteration_Base::SetQuery_ID(), and CIteration_Base::SetQuery_len().
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Definition at line 509 of file Parameters_.hpp.
Referenced by CParameters_Base::CParameters_Base(), CParameters_Base::IsSetBl2seq_mode(), CParameters_Base::IsSetCbs(), CParameters_Base::IsSetDb_gencode(), CParameters_Base::IsSetEntrez_query(), CParameters_Base::IsSetExpect(), CParameters_Base::IsSetFilter(), CParameters_Base::IsSetGap_extend(), CParameters_Base::IsSetGap_open(), CParameters_Base::IsSetInclude(), CParameters_Base::IsSetMatrix(), CParameters_Base::IsSetPattern(), CParameters_Base::IsSetQuery_gencode(), CParameters_Base::IsSetSc_match(), CParameters_Base::IsSetSc_mismatch(), CParameters_Base::ResetBl2seq_mode(), CParameters_Base::ResetCbs(), CParameters_Base::ResetDb_gencode(), CParameters_Base::ResetEntrez_query(), CParameters_Base::ResetExpect(), CParameters_Base::ResetFilter(), CParameters_Base::ResetGap_extend(), CParameters_Base::ResetGap_open(), CParameters_Base::ResetInclude(), CParameters_Base::ResetMatrix(), CParameters_Base::ResetPattern(), CParameters_Base::ResetQuery_gencode(), CParameters_Base::ResetSc_match(), CParameters_Base::ResetSc_mismatch(), CParameters_Base::SetBl2seq_mode(), CParameters_Base::SetCbs(), CParameters_Base::SetDb_gencode(), CParameters_Base::SetEntrez_query(), CParameters_Base::SetExpect(), CParameters_Base::SetFilter(), CParameters_Base::SetGap_extend(), CParameters_Base::SetGap_open(), CParameters_Base::SetInclude(), CParameters_Base::SetMatrix(), CParameters_Base::SetPattern(), CParameters_Base::SetQuery_gencode(), CParameters_Base::SetSc_match(), and CParameters_Base::SetSc_mismatch().
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Definition at line 381 of file Statistics_.hpp.
Referenced by CStatistics_Base::CStatistics_Base(), CStatistics_Base::IsSetDb_len(), CStatistics_Base::IsSetDb_num(), CStatistics_Base::IsSetEff_space(), CStatistics_Base::IsSetEntropy(), CStatistics_Base::IsSetHsp_len(), CStatistics_Base::IsSetKappa(), CStatistics_Base::IsSetLambda(), CStatistics_Base::ResetDb_len(), CStatistics_Base::ResetDb_num(), CStatistics_Base::ResetEff_space(), CStatistics_Base::ResetEntropy(), CStatistics_Base::ResetHsp_len(), CStatistics_Base::ResetKappa(), CStatistics_Base::ResetLambda(), CStatistics_Base::SetDb_len(), CStatistics_Base::SetDb_num(), CStatistics_Base::SetEff_space(), CStatistics_Base::SetEntropy(), CStatistics_Base::SetHsp_len(), CStatistics_Base::SetKappa(), and CStatistics_Base::SetLambda().
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Definition at line 908 of file Hsp_.hpp.
Referenced by CHsp_Base::CHsp_Base(), CHsp_Base::IsSetAlign_len(), CHsp_Base::IsSetBit_score(), CHsp_Base::IsSetDensity(), CHsp_Base::IsSetEvalue(), CHsp_Base::IsSetGaps(), CHsp_Base::IsSetHit_frame(), CHsp_Base::IsSetHit_from(), CHsp_Base::IsSetHit_strand(), CHsp_Base::IsSetHit_to(), CHsp_Base::IsSetHseq(), CHsp_Base::IsSetIdentity(), CHsp_Base::IsSetMidline(), CHsp_Base::IsSetNum(), CHsp_Base::IsSetPattern_from(), CHsp_Base::IsSetPattern_to(), CHsp_Base::IsSetPositive(), CHsp_Base::IsSetQseq(), CHsp_Base::IsSetQuery_frame(), CHsp_Base::IsSetQuery_from(), CHsp_Base::IsSetQuery_strand(), CHsp_Base::IsSetQuery_to(), CHsp_Base::IsSetScore(), CHsp_Base::ResetAlign_len(), CHsp_Base::ResetBit_score(), CHsp_Base::ResetDensity(), CHsp_Base::ResetEvalue(), CHsp_Base::ResetGaps(), CHsp_Base::ResetHit_frame(), CHsp_Base::ResetHit_from(), CHsp_Base::ResetHit_strand(), CHsp_Base::ResetHit_to(), CHsp_Base::ResetHseq(), CHsp_Base::ResetIdentity(), CHsp_Base::ResetMidline(), CHsp_Base::ResetNum(), CHsp_Base::ResetPattern_from(), CHsp_Base::ResetPattern_to(), CHsp_Base::ResetPositive(), CHsp_Base::ResetQseq(), CHsp_Base::ResetQuery_frame(), CHsp_Base::ResetQuery_from(), CHsp_Base::ResetQuery_strand(), CHsp_Base::ResetQuery_to(), CHsp_Base::ResetScore(), CHsp_Base::SetAlign_len(), CHsp_Base::SetBit_score(), CHsp_Base::SetDensity(), CHsp_Base::SetEvalue(), CHsp_Base::SetGaps(), CHsp_Base::SetHit_frame(), CHsp_Base::SetHit_from(), CHsp_Base::SetHit_strand(), CHsp_Base::SetHit_to(), CHsp_Base::SetHseq(), CHsp_Base::SetIdentity(), CHsp_Base::SetMidline(), CHsp_Base::SetNum(), CHsp_Base::SetPattern_from(), CHsp_Base::SetPattern_to(), CHsp_Base::SetPositive(), CHsp_Base::SetQseq(), CHsp_Base::SetQuery_frame(), CHsp_Base::SetQuery_from(), CHsp_Base::SetQuery_strand(), CHsp_Base::SetQuery_to(), and CHsp_Base::SetScore().
Definition at line 394 of file Iteration_.hpp.
Referenced by CIteration_Base::GetStat(), CIteration_Base::IsSetStat(), CIteration_Base::ResetStat(), and CIteration_Base::SetStat().
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Definition at line 554 of file BlastOutput_.hpp.
Referenced by CBlastOutput_Base::GetVersion(), CBlastOutput_Base::ResetVersion(), and CBlastOutput_Base::SetVersion().