Code generated by DATATOOL from 'blastxml2.asn' (module 'NCBI-BlastOutput2')

Collaboration diagram for Code generated by DATATOOL from 'blastxml2.asn' (module 'NCBI-BlastOutput2'):

Classes
class	CBlastOutput2
	CBlastOutput2 –. More...
class	CBlastOutput2_Base
	CBlastOutput2_Base –. More...
class	CBlastXML2
	CBlastXML2 –. More...
class	CBlastXML2_Base
	CBlastXML2_Base –. More...
class	CErr
	CErr –. More...
class	CErr_Base
	CErr_Base –. More...
class	CHit
	A generalized representation of a pairwise alignment. More...
class	CHit_Base
	CHit_Base –. More...
class	CHitDescr
	CHitDescr –. More...
class	CHitDescr_Base
	Description of entries for this (possibly non-redundant) sequence. More...
class	CHsp
	CHsp –. More...
class	CHsp_Base
	CHsp_Base –. More...
class	CIteration
	CIteration –. More...
class	CIteration_Base
	CIteration_Base –. More...
class	CParameters
	CParameters –. More...
class	CParameters_Base
	CParameters_Base –. More...
class	CRange< Position >
	CRange –. More...
class	CRange_Base
	Used to specify start/stop of masking on query. More...
class	CReport
	CReport –. More...
class	CReport_Base
	CReport_Base –. More...
class	CResults
	CResults –. More...
class	CResults_Base
	CResults_Base –. More...
class	CSearch< LEGACY, NHITS >
	CSearch –. More...
class	CSearch_Base< LEGACY, NHITS, derived_t >
	CSearch_Base –. More...
class	CStatistics
	CStatistics –. More...
class	CStatistics_Base
	CStatistics_Base –. More...
class	CTarget
	CTarget –. More...
class	CTarget_Base
	CTarget_Base –. More...

Typedefs
typedef CBlastOutput2_Base	CBlastOutput2::Tparent
typedef CSerialObject	CBlastOutput2_Base::Tparent
typedef CReport	CBlastOutput2_Base::TReport
typedef CErr	CBlastOutput2_Base::TError
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CBlastOutput2_Base::TmemberIndex
typedef CBlastXML2_Base	CBlastXML2::Tparent
typedef CSerialObject	CBlastXML2_Base::Tparent
typedef list< CRef< CBlastOutput2 > >	CBlastXML2_Base::Tdata
typedef CErr_Base	CErr::Tparent
typedef CSerialObject	CErr_Base::Tparent
typedef int	CErr_Base::TCode
typedef string	CErr_Base::TMessage
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CErr_Base::TmemberIndex
typedef CHit_Base	CHit::Tparent
typedef CSerialObject	CHit_Base::Tparent
typedef int	CHit_Base::TNum
typedef list< CRef< CHitDescr > >	CHit_Base::TDescription
typedef int	CHit_Base::TLen
typedef list< CRef< CHsp > >	CHit_Base::THsps
typedef Tparent::CMemberIndex< E_memberIndex, 5 >	CHit_Base::TmemberIndex
typedef CHitDescr_Base	CHitDescr::Tparent
typedef CSerialObject	CHitDescr_Base::Tparent
typedef string	CHitDescr_Base::TId
typedef string	CHitDescr_Base::TAccession
typedef string	CHitDescr_Base::TTitle
typedef NCBI_NS_NCBI::TTaxId	CHitDescr_Base::TTaxid
typedef string	CHitDescr_Base::TSciname
typedef Tparent::CMemberIndex< E_memberIndex, 6 >	CHitDescr_Base::TmemberIndex
typedef CHsp_Base	CHsp::Tparent
typedef CSerialObject	CHsp_Base::Tparent
typedef int	CHsp_Base::TNum
typedef double	CHsp_Base::TBit_score
typedef double	CHsp_Base::TScore
typedef double	CHsp_Base::TEvalue
typedef int	CHsp_Base::TIdentity
typedef int	CHsp_Base::TPositive
typedef int	CHsp_Base::TDensity
typedef int	CHsp_Base::TPattern_from
typedef int	CHsp_Base::TPattern_to
typedef int	CHsp_Base::TQuery_from
typedef int	CHsp_Base::TQuery_to
typedef string	CHsp_Base::TQuery_strand
typedef int	CHsp_Base::TQuery_frame
typedef int	CHsp_Base::THit_from
typedef int	CHsp_Base::THit_to
typedef string	CHsp_Base::THit_strand
typedef int	CHsp_Base::THit_frame
typedef int	CHsp_Base::TAlign_len
typedef int	CHsp_Base::TGaps
typedef string	CHsp_Base::TQseq
typedef string	CHsp_Base::THseq
typedef string	CHsp_Base::TMidline
typedef Tparent::CMemberIndex< E_memberIndex, 23 >	CHsp_Base::TmemberIndex
typedef CIteration_Base	CIteration::Tparent
typedef CSerialObject	CIteration_Base::Tparent
typedef int	CIteration_Base::TIter_num
typedef CSearch	CIteration_Base::TSearch
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CIteration_Base::TmemberIndex
typedef CParameters_Base	CParameters::Tparent
typedef CSerialObject	CParameters_Base::Tparent
typedef string	CParameters_Base::TMatrix
typedef double	CParameters_Base::TExpect
typedef double	CParameters_Base::TInclude
typedef int	CParameters_Base::TSc_match
typedef int	CParameters_Base::TSc_mismatch
typedef int	CParameters_Base::TGap_open
typedef int	CParameters_Base::TGap_extend
typedef string	CParameters_Base::TFilter
typedef string	CParameters_Base::TPattern
typedef string	CParameters_Base::TEntrez_query
typedef int	CParameters_Base::TCbs
typedef int	CParameters_Base::TQuery_gencode
typedef int	CParameters_Base::TDb_gencode
typedef string	CParameters_Base::TBl2seq_mode
typedef Tparent::CMemberIndex< E_memberIndex, 15 >	CParameters_Base::TmemberIndex
typedef CRange_Base	CRange< Position >::Tparent
typedef CSerialObject	CRange_Base::Tparent
typedef int	CRange_Base::TFrom
typedef int	CRange_Base::TTo
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CRange_Base::TmemberIndex
typedef CReport_Base	CReport::Tparent
typedef CSerialObject	CReport_Base::Tparent
typedef string	CReport_Base::TProgram
typedef string	CReport_Base::TVersion
typedef string	CReport_Base::TReference
typedef CTarget	CReport_Base::TSearch_target
typedef CParameters	CReport_Base::TParams
typedef CResults	CReport_Base::TResults
typedef Tparent::CMemberIndex< E_memberIndex, 7 >	CReport_Base::TmemberIndex
typedef CResults_Base	CResults::Tparent
typedef CSerialObject	CResults_Base::Tparent
typedef list< CRef< CIteration > >	CResults_Base::TIterations
typedef CSearch	CResults_Base::TSearch
typedef list< CRef< CSearch > >	CResults_Base::TBl2seq
typedef CSearch_Base	CSearch< LEGACY, NHITS >::Tparent
typedef CSerialObject	CSearch_Base< LEGACY, NHITS, derived_t >::Tparent
typedef string	CSearch_Base< LEGACY, NHITS, derived_t >::TQuery_id
typedef string	CSearch_Base< LEGACY, NHITS, derived_t >::TQuery_title
typedef int	CSearch_Base< LEGACY, NHITS, derived_t >::TQuery_len
typedef list< CRef< CRange > >	CSearch_Base< LEGACY, NHITS, derived_t >::TQuery_masking
typedef list< CRef< CHit > >	CSearch_Base< LEGACY, NHITS, derived_t >::THits
typedef CStatistics	CSearch_Base< LEGACY, NHITS, derived_t >::TStat
typedef string	CSearch_Base< LEGACY, NHITS, derived_t >::TMessage
typedef Tparent::CMemberIndex< E_memberIndex, 8 >	CSearch_Base< LEGACY, NHITS, derived_t >::TmemberIndex
typedef CStatistics_Base	CStatistics::Tparent
typedef CSerialObject	CStatistics_Base::Tparent
typedef Int8	CStatistics_Base::TDb_num
typedef Int8	CStatistics_Base::TDb_len
typedef int	CStatistics_Base::THsp_len
typedef Int8	CStatistics_Base::TEff_space
typedef double	CStatistics_Base::TKappa
typedef double	CStatistics_Base::TLambda
typedef double	CStatistics_Base::TEntropy
typedef Tparent::CMemberIndex< E_memberIndex, 8 >	CStatistics_Base::TmemberIndex
typedef CTarget_Base	CTarget::Tparent
typedef CSerialObject	CTarget_Base::Tparent
typedef string	CTarget_Base::TDb
typedef list< string >	CTarget_Base::TSubjects

Enumerations
enum class	CBlastOutput2_Base::E_memberIndex { CBlastOutput2_Base::e__allMandatory = 0 , CBlastOutput2_Base::e_report , CBlastOutput2_Base::e_error }
enum class	CErr_Base::E_memberIndex { CErr_Base::e__allMandatory = 0 , CErr_Base::e_code , CErr_Base::e_message }
enum class	CHit_Base::E_memberIndex {   CHit_Base::e__allMandatory = 0 , CHit_Base::e_num , CHit_Base::e_id , CHit_Base::e_def ,   CHit_Base::e_accession , CHit_Base::e_len , CHit_Base::e_hsps , CHit_Base::e__allMandatory = 0 ,   CHit_Base::e_num , CHit_Base::e_description , CHit_Base::e_len , CHit_Base::e_hsps }
enum class	CHitDescr_Base::E_memberIndex {   CHitDescr_Base::e__allMandatory = 0 , CHitDescr_Base::e_id , CHitDescr_Base::e_accession , CHitDescr_Base::e_title ,   CHitDescr_Base::e_taxid , CHitDescr_Base::e_sciname }
enum class	CHsp_Base::E_memberIndex {   CHsp_Base::e__allMandatory = 0 , CHsp_Base::e_num , CHsp_Base::e_bit_score , CHsp_Base::e_score ,   CHsp_Base::e_evalue , CHsp_Base::e_query_from , CHsp_Base::e_query_to , CHsp_Base::e_hit_from ,   CHsp_Base::e_hit_to , CHsp_Base::e_pattern_from , CHsp_Base::e_pattern_to , CHsp_Base::e_query_frame ,   CHsp_Base::e_hit_frame , CHsp_Base::e_identity , CHsp_Base::e_positive , CHsp_Base::e_gaps ,   CHsp_Base::e_align_len , CHsp_Base::e_density , CHsp_Base::e_qseq , CHsp_Base::e_hseq ,   CHsp_Base::e_midline , CHsp_Base::e__allMandatory = 0 , CHsp_Base::e_num , CHsp_Base::e_bit_score ,   CHsp_Base::e_score , CHsp_Base::e_evalue , CHsp_Base::e_identity , CHsp_Base::e_positive ,   CHsp_Base::e_density , CHsp_Base::e_pattern_from , CHsp_Base::e_pattern_to , CHsp_Base::e_query_from ,   CHsp_Base::e_query_to , CHsp_Base::e_query_strand , CHsp_Base::e_query_frame , CHsp_Base::e_hit_from ,   CHsp_Base::e_hit_to , CHsp_Base::e_hit_strand , CHsp_Base::e_hit_frame , CHsp_Base::e_align_len ,   CHsp_Base::e_gaps , CHsp_Base::e_qseq , CHsp_Base::e_hseq , CHsp_Base::e_midline }
enum class	CIteration_Base::E_memberIndex {   CIteration_Base::e__allMandatory = 0 , CIteration_Base::e_iter_num , CIteration_Base::e_query_ID , CIteration_Base::e_query_def ,   CIteration_Base::e_query_len , CIteration_Base::e_hits , CIteration_Base::e_stat , CIteration_Base::e_message ,   CIteration_Base::e__allMandatory = 0 , CIteration_Base::e_iter_num , CIteration_Base::e_search }
enum class	CParameters_Base::E_memberIndex {   CParameters_Base::e__allMandatory = 0 , CParameters_Base::e_matrix , CParameters_Base::e_expect , CParameters_Base::e_include ,   CParameters_Base::e_sc_match , CParameters_Base::e_sc_mismatch , CParameters_Base::e_gap_open , CParameters_Base::e_gap_extend ,   CParameters_Base::e_filter , CParameters_Base::e_pattern , CParameters_Base::e_entrez_query , CParameters_Base::e__allMandatory = 0 ,   CParameters_Base::e_matrix , CParameters_Base::e_expect , CParameters_Base::e_include , CParameters_Base::e_sc_match ,   CParameters_Base::e_sc_mismatch , CParameters_Base::e_gap_open , CParameters_Base::e_gap_extend , CParameters_Base::e_filter ,   CParameters_Base::e_pattern , CParameters_Base::e_entrez_query , CParameters_Base::e_cbs , CParameters_Base::e_query_gencode ,   CParameters_Base::e_db_gencode , CParameters_Base::e_bl2seq_mode }
enum class	CRange_Base::E_memberIndex { CRange_Base::e__allMandatory = 0 , CRange_Base::e_from , CRange_Base::e_to }
enum class	CReport_Base::E_memberIndex {   CReport_Base::e__allMandatory = 0 , CReport_Base::e_program , CReport_Base::e_version , CReport_Base::e_reference ,   CReport_Base::e_search_target , CReport_Base::e_params , CReport_Base::e_results }
enum	CResults_Base::E_Choice { CResults_Base::e_not_set = 0 , CResults_Base::e_Iterations , CResults_Base::e_Search , CResults_Base::e_Bl2seq }
	Choice variants. More...
enum	CResults_Base::E_ChoiceStopper { CResults_Base::e_MaxChoice = 4 }
	Maximum+1 value of the choice variant enumerator. More...
enum class	CSearch_Base< LEGACY, NHITS, derived_t >::E_memberIndex {   CSearch_Base< LEGACY, NHITS, derived_t >::e__allMandatory = 0 , CSearch_Base< LEGACY, NHITS, derived_t >::e_query_id , CSearch_Base< LEGACY, NHITS, derived_t >::e_query_title , CSearch_Base< LEGACY, NHITS, derived_t >::e_query_len ,   CSearch_Base< LEGACY, NHITS, derived_t >::e_query_masking , CSearch_Base< LEGACY, NHITS, derived_t >::e_hits , CSearch_Base< LEGACY, NHITS, derived_t >::e_stat , CSearch_Base< LEGACY, NHITS, derived_t >::e_message }
enum class	CStatistics_Base::E_memberIndex {   CStatistics_Base::e__allMandatory = 0 , CStatistics_Base::e_db_num , CStatistics_Base::e_db_len , CStatistics_Base::e_hsp_len ,   CStatistics_Base::e_eff_space , CStatistics_Base::e_kappa , CStatistics_Base::e_lambda , CStatistics_Base::e_entropy ,   CStatistics_Base::e__allMandatory = 0 , CStatistics_Base::e_db_num , CStatistics_Base::e_db_len , CStatistics_Base::e_hsp_len ,   CStatistics_Base::e_eff_space , CStatistics_Base::e_kappa , CStatistics_Base::e_lambda , CStatistics_Base::e_entropy }
enum	CTarget_Base::E_Choice { CTarget_Base::e_not_set = 0 , CTarget_Base::e_Db , CTarget_Base::e_Subjects }
	Choice variants. More...
enum	CTarget_Base::E_ChoiceStopper { CTarget_Base::e_MaxChoice = 3 }
	Maximum+1 value of the choice variant enumerator. More...

Functions
	CBlastOutput2::CBlastOutput2 (void)
	CBlastOutput2::~CBlastOutput2 (void)
	CBlastOutput2::CBlastOutput2 (const CBlastOutput2 &value)
CBlastOutput2 &	CBlastOutput2::operator= (const CBlastOutput2 &value)
	CBlastOutput2_Base::CBlastOutput2_Base (void)
virtual	CBlastOutput2_Base::~CBlastOutput2_Base (void)
	CBlastOutput2_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CBlastOutput2_Base::IsSetReport (void) const
	Check if a value has been assigned to Report data member. More...
bool	CBlastOutput2_Base::CanGetReport (void) const
	Check if it is safe to call GetReport method. More...
void	CBlastOutput2_Base::ResetReport (void)
	Reset Report data member. More...
const TReport &	CBlastOutput2_Base::GetReport (void) const
	Get the Report member data. More...
void	CBlastOutput2_Base::SetReport (TReport &value)
	Assign a value to Report data member. More...
TReport &	CBlastOutput2_Base::SetReport (void)
	Assign a value to Report data member. More...
bool	CBlastOutput2_Base::IsSetError (void) const
	Check if a value has been assigned to Error data member. More...
bool	CBlastOutput2_Base::CanGetError (void) const
	Check if it is safe to call GetError method. More...
void	CBlastOutput2_Base::ResetError (void)
	Reset Error data member. More...
const TError &	CBlastOutput2_Base::GetError (void) const
	Get the Error member data. More...
void	CBlastOutput2_Base::SetError (TError &value)
	Assign a value to Error data member. More...
TError &	CBlastOutput2_Base::SetError (void)
	Assign a value to Error data member. More...
virtual void	CBlastOutput2_Base::Reset (void)
	Reset the whole object. More...
	CBlastOutput2_Base::CBlastOutput2_Base (const CBlastOutput2_Base &)
CBlastOutput2_Base &	CBlastOutput2_Base::operator= (const CBlastOutput2_Base &)
	CBlastXML2::CBlastXML2 (void)
	CBlastXML2::~CBlastXML2 (void)
	CBlastXML2::CBlastXML2 (const CBlastXML2 &value)
CBlastXML2 &	CBlastXML2::operator= (const CBlastXML2 &value)
	CBlastXML2_Base::CBlastXML2_Base (void)
virtual	CBlastXML2_Base::~CBlastXML2_Base (void)
	CBlastXML2_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CBlastXML2_Base::IsSet (void) const
	Check if a value has been assigned to data member. More...
bool	CBlastXML2_Base::CanGet (void) const
	Check if it is safe to call Get method. More...
void	CBlastXML2_Base::Reset (void)
	Reset data member. More...
const Tdata &	CBlastXML2_Base::Get (void) const
	Get the member data. More...
Tdata &	CBlastXML2_Base::Set (void)
	Assign a value to data member. More...
	CBlastXML2_Base::operator const Tdata & (void) const
	Conversion operator to 'const Tdata' type. More...
	CBlastXML2_Base::operator Tdata & (void)
	Conversion operator to 'Tdata' type. More...
	CBlastXML2_Base::CBlastXML2_Base (const CBlastXML2_Base &)
CBlastXML2_Base &	CBlastXML2_Base::operator= (const CBlastXML2_Base &)
	CErr::CErr (void)
	CErr::~CErr (void)
	CErr::CErr (const CErr &value)
CErr &	CErr::operator= (const CErr &value)
	CErr_Base::CErr_Base (void)
virtual	CErr_Base::~CErr_Base (void)
	CErr_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CErr_Base::IsSetCode (void) const
	Check if a value has been assigned to Code data member. More...
bool	CErr_Base::CanGetCode (void) const
	Check if it is safe to call GetCode method. More...
void	CErr_Base::ResetCode (void)
	Reset Code data member. More...
TCode	CErr_Base::GetCode (void) const
	Get the Code member data. More...
void	CErr_Base::SetCode (TCode value)
	Assign a value to Code data member. More...
TCode &	CErr_Base::SetCode (void)
	Assign a value to Code data member. More...
bool	CErr_Base::IsSetMessage (void) const
	Check if a value has been assigned to Message data member. More...
bool	CErr_Base::CanGetMessage (void) const
	Check if it is safe to call GetMessage method. More...
void	CErr_Base::ResetMessage (void)
	Reset Message data member. More...
const TMessage &	CErr_Base::GetMessage (void) const
	Get the Message member data. More...
void	CErr_Base::SetMessage (const TMessage &value)
	Assign a value to Message data member. More...
void	CErr_Base::SetMessage (TMessage &&value)
TMessage &	CErr_Base::SetMessage (void)
	Assign a value to Message data member. More...
virtual void	CErr_Base::Reset (void)
	Reset the whole object. More...
	CErr_Base::CErr_Base (const CErr_Base &)
CErr_Base &	CErr_Base::operator= (const CErr_Base &)
	CHit::CHit (void)
	CHit::~CHit (void)
	CHit::CHit (const CHit &value)
CHit &	CHit::operator= (const CHit &value)
	CHit_Base::CHit_Base (void)
virtual	CHit_Base::~CHit_Base (void)
	CHit_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CHit_Base::IsSetNum (void) const
	hit number Check if a value has been assigned to Num data member. More...
bool	CHit_Base::CanGetNum (void) const
	Check if it is safe to call GetNum method. More...
void	CHit_Base::ResetNum (void)
	Reset Num data member. More...
TNum	CHit_Base::GetNum (void) const
	Get the Num member data. More...
void	CHit_Base::SetNum (TNum value)
	Assign a value to Num data member. More...
TNum &	CHit_Base::SetNum (void)
	Assign a value to Num data member. More...
bool	CHit_Base::IsSetDescription (void) const
	ID, title, and taxonomy for each entry in the PIG Check if a value has been assigned to Description data member. More...
bool	CHit_Base::CanGetDescription (void) const
	Check if it is safe to call GetDescription method. More...
void	CHit_Base::ResetDescription (void)
	Reset Description data member. More...
const TDescription &	CHit_Base::GetDescription (void) const
	Get the Description member data. More...
TDescription &	CHit_Base::SetDescription (void)
	Assign a value to Description data member. More...
bool	CHit_Base::IsSetLen (void) const
	length of subject Check if a value has been assigned to Len data member. More...
bool	CHit_Base::CanGetLen (void) const
	Check if it is safe to call GetLen method. More...
void	CHit_Base::ResetLen (void)
	Reset Len data member. More...
TLen	CHit_Base::GetLen (void) const
	Get the Len member data. More...
void	CHit_Base::SetLen (TLen value)
	Assign a value to Len data member. More...
TLen &	CHit_Base::SetLen (void)
	Assign a value to Len data member. More...
bool	CHit_Base::IsSetHsps (void) const
	all HSP regions for the given subject Check if a value has been assigned to Hsps data member. More...
bool	CHit_Base::CanGetHsps (void) const
	Check if it is safe to call GetHsps method. More...
void	CHit_Base::ResetHsps (void)
	Reset Hsps data member. More...
const THsps &	CHit_Base::GetHsps (void) const
	Get the Hsps member data. More...
THsps &	CHit_Base::SetHsps (void)
	Assign a value to Hsps data member. More...
virtual void	CHit_Base::Reset (void)
	Reset the whole object. More...
	CHit_Base::CHit_Base (const CHit_Base &)
CHit_Base &	CHit_Base::operator= (const CHit_Base &)
	CHitDescr::CHitDescr (void)
	CHitDescr::~CHitDescr (void)
	CHitDescr::CHitDescr (const CHitDescr &value)
CHitDescr &	CHitDescr::operator= (const CHitDescr &value)
	CHitDescr_Base::CHitDescr_Base (void)
virtual	CHitDescr_Base::~CHitDescr_Base (void)
	CHitDescr_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CHitDescr_Base::IsSetId (void) const
	SeqId of subject Check if a value has been assigned to Id data member. More...
bool	CHitDescr_Base::CanGetId (void) const
	Check if it is safe to call GetId method. More...
void	CHitDescr_Base::ResetId (void)
	Reset Id data member. More...
const TId &	CHitDescr_Base::GetId (void) const
	Get the Id member data. More...
void	CHitDescr_Base::SetId (const TId &value)
	Assign a value to Id data member. More...
void	CHitDescr_Base::SetId (TId &&value)
TId &	CHitDescr_Base::SetId (void)
	Assign a value to Id data member. More...
bool	CHitDescr_Base::IsSetAccession (void) const
	accession Check if a value has been assigned to Accession data member. More...
bool	CHitDescr_Base::CanGetAccession (void) const
	Check if it is safe to call GetAccession method. More...
void	CHitDescr_Base::ResetAccession (void)
	Reset Accession data member. More...
const TAccession &	CHitDescr_Base::GetAccession (void) const
	Get the Accession member data. More...
void	CHitDescr_Base::SetAccession (const TAccession &value)
	Assign a value to Accession data member. More...
void	CHitDescr_Base::SetAccession (TAccession &&value)
TAccession &	CHitDescr_Base::SetAccession (void)
	Assign a value to Accession data member. More...
bool	CHitDescr_Base::IsSetTitle (void) const
	title (definition line) of subject Check if a value has been assigned to Title data member. More...
bool	CHitDescr_Base::CanGetTitle (void) const
	Check if it is safe to call GetTitle method. More...
void	CHitDescr_Base::ResetTitle (void)
	Reset Title data member. More...
const TTitle &	CHitDescr_Base::GetTitle (void) const
	Get the Title member data. More...
void	CHitDescr_Base::SetTitle (const TTitle &value)
	Assign a value to Title data member. More...
void	CHitDescr_Base::SetTitle (TTitle &&value)
TTitle &	CHitDescr_Base::SetTitle (void)
	Assign a value to Title data member. More...
bool	CHitDescr_Base::IsSetTaxid (void) const
	NCBI taxid (9606 for human) Check if a value has been assigned to Taxid data member. More...
bool	CHitDescr_Base::CanGetTaxid (void) const
	Check if it is safe to call GetTaxid method. More...
void	CHitDescr_Base::ResetTaxid (void)
	Reset Taxid data member. More...
TTaxid	CHitDescr_Base::GetTaxid (void) const
	Get the Taxid member data. More...
void	CHitDescr_Base::SetTaxid (TTaxid value)
	Assign a value to Taxid data member. More...
TTaxid &	CHitDescr_Base::SetTaxid (void)
	Assign a value to Taxid data member. More...
bool	CHitDescr_Base::IsSetSciname (void) const
	binomial scientific name ("Homo sapiens" for human). More...
bool	CHitDescr_Base::CanGetSciname (void) const
	Check if it is safe to call GetSciname method. More...
void	CHitDescr_Base::ResetSciname (void)
	Reset Sciname data member. More...
const TSciname &	CHitDescr_Base::GetSciname (void) const
	Get the Sciname member data. More...
void	CHitDescr_Base::SetSciname (const TSciname &value)
	Assign a value to Sciname data member. More...
void	CHitDescr_Base::SetSciname (TSciname &&value)
TSciname &	CHitDescr_Base::SetSciname (void)
	Assign a value to Sciname data member. More...
virtual void	CHitDescr_Base::Reset (void)
	Reset the whole object. More...
	CHitDescr_Base::CHitDescr_Base (const CHitDescr_Base &)
CHitDescr_Base &	CHitDescr_Base::operator= (const CHitDescr_Base &)
	CHsp::CHsp (void)
	CHsp::~CHsp (void)
	CHsp::CHsp (const CHsp &value)
CHsp &	CHsp::operator= (const CHsp &value)
	CHsp_Base::CHsp_Base (void)
virtual	CHsp_Base::~CHsp_Base (void)
	CHsp_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CHsp_Base::IsSetNum (void) const
	HSP number Check if a value has been assigned to Num data member. More...
bool	CHsp_Base::CanGetNum (void) const
	Check if it is safe to call GetNum method. More...
void	CHsp_Base::ResetNum (void)
	Reset Num data member. More...
TNum	CHsp_Base::GetNum (void) const
	Get the Num member data. More...
void	CHsp_Base::SetNum (TNum value)
	Assign a value to Num data member. More...
TNum &	CHsp_Base::SetNum (void)
	Assign a value to Num data member. More...
bool	CHsp_Base::IsSetBit_score (void) const
	score (in bits) of HSP Check if a value has been assigned to Bit_score data member. More...
bool	CHsp_Base::CanGetBit_score (void) const
	Check if it is safe to call GetBit_score method. More...
void	CHsp_Base::ResetBit_score (void)
	Reset Bit_score data member. More...
TBit_score	CHsp_Base::GetBit_score (void) const
	Get the Bit_score member data. More...
void	CHsp_Base::SetBit_score (TBit_score value)
	Assign a value to Bit_score data member. More...
TBit_score &	CHsp_Base::SetBit_score (void)
	Assign a value to Bit_score data member. More...
bool	CHsp_Base::IsSetScore (void) const
	score of HSP Check if a value has been assigned to Score data member. More...
bool	CHsp_Base::CanGetScore (void) const
	Check if it is safe to call GetScore method. More...
void	CHsp_Base::ResetScore (void)
	Reset Score data member. More...
TScore	CHsp_Base::GetScore (void) const
	Get the Score member data. More...
void	CHsp_Base::SetScore (TScore value)
	Assign a value to Score data member. More...
TScore &	CHsp_Base::SetScore (void)
	Assign a value to Score data member. More...
bool	CHsp_Base::IsSetEvalue (void) const
	e-value of HSP Check if a value has been assigned to Evalue data member. More...
bool	CHsp_Base::CanGetEvalue (void) const
	Check if it is safe to call GetEvalue method. More...
void	CHsp_Base::ResetEvalue (void)
	Reset Evalue data member. More...
TEvalue	CHsp_Base::GetEvalue (void) const
	Get the Evalue member data. More...
void	CHsp_Base::SetEvalue (TEvalue value)
	Assign a value to Evalue data member. More...
TEvalue &	CHsp_Base::SetEvalue (void)
	Assign a value to Evalue data member. More...
bool	CHsp_Base::IsSetIdentity (void) const
	number of identities in HSP Check if a value has been assigned to Identity data member. More...
bool	CHsp_Base::CanGetIdentity (void) const
	Check if it is safe to call GetIdentity method. More...
void	CHsp_Base::ResetIdentity (void)
	Reset Identity data member. More...
TIdentity	CHsp_Base::GetIdentity (void) const
	Get the Identity member data. More...
void	CHsp_Base::SetIdentity (TIdentity value)
	Assign a value to Identity data member. More...
TIdentity &	CHsp_Base::SetIdentity (void)
	Assign a value to Identity data member. More...
bool	CHsp_Base::IsSetPositive (void) const
	number of positives in HSP Check if a value has been assigned to Positive data member. More...
bool	CHsp_Base::CanGetPositive (void) const
	Check if it is safe to call GetPositive method. More...
void	CHsp_Base::ResetPositive (void)
	Reset Positive data member. More...
TPositive	CHsp_Base::GetPositive (void) const
	Get the Positive member data. More...
void	CHsp_Base::SetPositive (TPositive value)
	Assign a value to Positive data member. More...
TPositive &	CHsp_Base::SetPositive (void)
	Assign a value to Positive data member. More...
bool	CHsp_Base::IsSetDensity (void) const
	score density Check if a value has been assigned to Density data member. More...
bool	CHsp_Base::CanGetDensity (void) const
	Check if it is safe to call GetDensity method. More...
void	CHsp_Base::ResetDensity (void)
	Reset Density data member. More...
TDensity	CHsp_Base::GetDensity (void) const
	Get the Density member data. More...
void	CHsp_Base::SetDensity (TDensity value)
	Assign a value to Density data member. More...
TDensity &	CHsp_Base::SetDensity (void)
	Assign a value to Density data member. More...
bool	CHsp_Base::IsSetPattern_from (void) const
	start of PHI-BLAST pattern Check if a value has been assigned to Pattern_from data member. More...
bool	CHsp_Base::CanGetPattern_from (void) const
	Check if it is safe to call GetPattern_from method. More...
void	CHsp_Base::ResetPattern_from (void)
	Reset Pattern_from data member. More...
TPattern_from	CHsp_Base::GetPattern_from (void) const
	Get the Pattern_from member data. More...
void	CHsp_Base::SetPattern_from (TPattern_from value)
	Assign a value to Pattern_from data member. More...
TPattern_from &	CHsp_Base::SetPattern_from (void)
	Assign a value to Pattern_from data member. More...
bool	CHsp_Base::IsSetPattern_to (void) const
	end of PHI-BLAST pattern Check if a value has been assigned to Pattern_to data member. More...
bool	CHsp_Base::CanGetPattern_to (void) const
	Check if it is safe to call GetPattern_to method. More...
void	CHsp_Base::ResetPattern_to (void)
	Reset Pattern_to data member. More...
TPattern_to	CHsp_Base::GetPattern_to (void) const
	Get the Pattern_to member data. More...
void	CHsp_Base::SetPattern_to (TPattern_to value)
	Assign a value to Pattern_to data member. More...
TPattern_to &	CHsp_Base::SetPattern_to (void)
	Assign a value to Pattern_to data member. More...
bool	CHsp_Base::IsSetQuery_from (void) const
	start of HSP in query Check if a value has been assigned to Query_from data member. More...
bool	CHsp_Base::CanGetQuery_from (void) const
	Check if it is safe to call GetQuery_from method. More...
void	CHsp_Base::ResetQuery_from (void)
	Reset Query_from data member. More...
TQuery_from	CHsp_Base::GetQuery_from (void) const
	Get the Query_from member data. More...
void	CHsp_Base::SetQuery_from (TQuery_from value)
	Assign a value to Query_from data member. More...
TQuery_from &	CHsp_Base::SetQuery_from (void)
	Assign a value to Query_from data member. More...
bool	CHsp_Base::IsSetQuery_to (void) const
	end of HSP Check if a value has been assigned to Query_to data member. More...
bool	CHsp_Base::CanGetQuery_to (void) const
	Check if it is safe to call GetQuery_to method. More...
void	CHsp_Base::ResetQuery_to (void)
	Reset Query_to data member. More...
TQuery_to	CHsp_Base::GetQuery_to (void) const
	Get the Query_to member data. More...
void	CHsp_Base::SetQuery_to (TQuery_to value)
	Assign a value to Query_to data member. More...
TQuery_to &	CHsp_Base::SetQuery_to (void)
	Assign a value to Query_to data member. More...
bool	CHsp_Base::IsSetQuery_strand (void) const
	Strand of query (blastn) Check if a value has been assigned to Query_strand data member. More...
bool	CHsp_Base::CanGetQuery_strand (void) const
	Check if it is safe to call GetQuery_strand method. More...
void	CHsp_Base::ResetQuery_strand (void)
	Reset Query_strand data member. More...
const TQuery_strand &	CHsp_Base::GetQuery_strand (void) const
	Get the Query_strand member data. More...
void	CHsp_Base::SetQuery_strand (const TQuery_strand &value)
	Assign a value to Query_strand data member. More...
void	CHsp_Base::SetQuery_strand (TQuery_strand &&value)
TQuery_strand &	CHsp_Base::SetQuery_strand (void)
	Assign a value to Query_strand data member. More...
bool	CHsp_Base::IsSetQuery_frame (void) const
	translation frame of query (blastx, tblastx) Check if a value has been assigned to Query_frame data member. More...
bool	CHsp_Base::CanGetQuery_frame (void) const
	Check if it is safe to call GetQuery_frame method. More...
void	CHsp_Base::ResetQuery_frame (void)
	Reset Query_frame data member. More...
TQuery_frame	CHsp_Base::GetQuery_frame (void) const
	Get the Query_frame member data. More...
void	CHsp_Base::SetQuery_frame (TQuery_frame value)
	Assign a value to Query_frame data member. More...
TQuery_frame &	CHsp_Base::SetQuery_frame (void)
	Assign a value to Query_frame data member. More...
bool	CHsp_Base::IsSetHit_from (void) const
	start of HSP in subject Check if a value has been assigned to Hit_from data member. More...
bool	CHsp_Base::CanGetHit_from (void) const
	Check if it is safe to call GetHit_from method. More...
void	CHsp_Base::ResetHit_from (void)
	Reset Hit_from data member. More...
THit_from	CHsp_Base::GetHit_from (void) const
	Get the Hit_from member data. More...
void	CHsp_Base::SetHit_from (THit_from value)
	Assign a value to Hit_from data member. More...
THit_from &	CHsp_Base::SetHit_from (void)
	Assign a value to Hit_from data member. More...
bool	CHsp_Base::IsSetHit_to (void) const
	end of HSP in subject Check if a value has been assigned to Hit_to data member. More...
bool	CHsp_Base::CanGetHit_to (void) const
	Check if it is safe to call GetHit_to method. More...
void	CHsp_Base::ResetHit_to (void)
	Reset Hit_to data member. More...
THit_to	CHsp_Base::GetHit_to (void) const
	Get the Hit_to member data. More...
void	CHsp_Base::SetHit_to (THit_to value)
	Assign a value to Hit_to data member. More...
THit_to &	CHsp_Base::SetHit_to (void)
	Assign a value to Hit_to data member. More...
bool	CHsp_Base::IsSetHit_strand (void) const
	Strand of subject (blastn) Check if a value has been assigned to Hit_strand data member. More...
bool	CHsp_Base::CanGetHit_strand (void) const
	Check if it is safe to call GetHit_strand method. More...
void	CHsp_Base::ResetHit_strand (void)
	Reset Hit_strand data member. More...
const THit_strand &	CHsp_Base::GetHit_strand (void) const
	Get the Hit_strand member data. More...
void	CHsp_Base::SetHit_strand (const THit_strand &value)
	Assign a value to Hit_strand data member. More...
void	CHsp_Base::SetHit_strand (THit_strand &&value)
THit_strand &	CHsp_Base::SetHit_strand (void)
	Assign a value to Hit_strand data member. More...
bool	CHsp_Base::IsSetHit_frame (void) const
	translation frame of subject (tblastn, tblastx) Check if a value has been assigned to Hit_frame data member. More...
bool	CHsp_Base::CanGetHit_frame (void) const
	Check if it is safe to call GetHit_frame method. More...
void	CHsp_Base::ResetHit_frame (void)
	Reset Hit_frame data member. More...
THit_frame	CHsp_Base::GetHit_frame (void) const
	Get the Hit_frame member data. More...
void	CHsp_Base::SetHit_frame (THit_frame value)
	Assign a value to Hit_frame data member. More...
THit_frame &	CHsp_Base::SetHit_frame (void)
	Assign a value to Hit_frame data member. More...
bool	CHsp_Base::IsSetAlign_len (void) const
	length of the alignment used Check if a value has been assigned to Align_len data member. More...
bool	CHsp_Base::CanGetAlign_len (void) const
	Check if it is safe to call GetAlign_len method. More...
void	CHsp_Base::ResetAlign_len (void)
	Reset Align_len data member. More...
TAlign_len	CHsp_Base::GetAlign_len (void) const
	Get the Align_len member data. More...
void	CHsp_Base::SetAlign_len (TAlign_len value)
	Assign a value to Align_len data member. More...
TAlign_len &	CHsp_Base::SetAlign_len (void)
	Assign a value to Align_len data member. More...
bool	CHsp_Base::IsSetGaps (void) const
	number of gaps in HSP Check if a value has been assigned to Gaps data member. More...
bool	CHsp_Base::CanGetGaps (void) const
	Check if it is safe to call GetGaps method. More...
void	CHsp_Base::ResetGaps (void)
	Reset Gaps data member. More...
TGaps	CHsp_Base::GetGaps (void) const
	Get the Gaps member data. More...
void	CHsp_Base::SetGaps (TGaps value)
	Assign a value to Gaps data member. More...
TGaps &	CHsp_Base::SetGaps (void)
	Assign a value to Gaps data member. More...
bool	CHsp_Base::IsSetQseq (void) const
	alignment string for the query (with gaps) Check if a value has been assigned to Qseq data member. More...
bool	CHsp_Base::CanGetQseq (void) const
	Check if it is safe to call GetQseq method. More...
void	CHsp_Base::ResetQseq (void)
	Reset Qseq data member. More...
const TQseq &	CHsp_Base::GetQseq (void) const
	Get the Qseq member data. More...
void	CHsp_Base::SetQseq (const TQseq &value)
	Assign a value to Qseq data member. More...
void	CHsp_Base::SetQseq (TQseq &&value)
TQseq &	CHsp_Base::SetQseq (void)
	Assign a value to Qseq data member. More...
bool	CHsp_Base::IsSetHseq (void) const
	alignment string for subject (with gaps) Check if a value has been assigned to Hseq data member. More...
bool	CHsp_Base::CanGetHseq (void) const
	Check if it is safe to call GetHseq method. More...
void	CHsp_Base::ResetHseq (void)
	Reset Hseq data member. More...
const THseq &	CHsp_Base::GetHseq (void) const
	Get the Hseq member data. More...
void	CHsp_Base::SetHseq (const THseq &value)
	Assign a value to Hseq data member. More...
void	CHsp_Base::SetHseq (THseq &&value)
THseq &	CHsp_Base::SetHseq (void)
	Assign a value to Hseq data member. More...
bool	CHsp_Base::IsSetMidline (void) const
	formating middle line Check if a value has been assigned to Midline data member. More...
bool	CHsp_Base::CanGetMidline (void) const
	Check if it is safe to call GetMidline method. More...
void	CHsp_Base::ResetMidline (void)
	Reset Midline data member. More...
const TMidline &	CHsp_Base::GetMidline (void) const
	Get the Midline member data. More...
void	CHsp_Base::SetMidline (const TMidline &value)
	Assign a value to Midline data member. More...
void	CHsp_Base::SetMidline (TMidline &&value)
TMidline &	CHsp_Base::SetMidline (void)
	Assign a value to Midline data member. More...
virtual void	CHsp_Base::Reset (void)
	Reset the whole object. More...
	CHsp_Base::CHsp_Base (const CHsp_Base &)
CHsp_Base &	CHsp_Base::operator= (const CHsp_Base &)
	CIteration::CIteration (void)
	CIteration::~CIteration (void)
	CIteration::CIteration (const CIteration &value)
CIteration &	CIteration::operator= (const CIteration &value)
	CIteration_Base::CIteration_Base (void)
virtual	CIteration_Base::~CIteration_Base (void)
	CIteration_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CIteration_Base::IsSetIter_num (void) const
	iteration number (use with psiblast) Check if a value has been assigned to Iter_num data member. More...
bool	CIteration_Base::CanGetIter_num (void) const
	Check if it is safe to call GetIter_num method. More...
void	CIteration_Base::ResetIter_num (void)
	Reset Iter_num data member. More...
TIter_num	CIteration_Base::GetIter_num (void) const
	Get the Iter_num member data. More...
void	CIteration_Base::SetIter_num (TIter_num value)
	Assign a value to Iter_num data member. More...
TIter_num &	CIteration_Base::SetIter_num (void)
	Assign a value to Iter_num data member. More...
bool	CIteration_Base::IsSetSearch (void) const
	Check if a value has been assigned to Search data member. More...
bool	CIteration_Base::CanGetSearch (void) const
	Check if it is safe to call GetSearch method. More...
void	CIteration_Base::ResetSearch (void)
	Reset Search data member. More...
const TSearch &	CIteration_Base::GetSearch (void) const
	Get the Search member data. More...
void	CIteration_Base::SetSearch (TSearch &value)
	Assign a value to Search data member. More...
TSearch &	CIteration_Base::SetSearch (void)
	Assign a value to Search data member. More...
virtual void	CIteration_Base::Reset (void)
	Reset the whole object. More...
	CIteration_Base::CIteration_Base (const CIteration_Base &)
CIteration_Base &	CIteration_Base::operator= (const CIteration_Base &)
	CParameters::CParameters (void)
	CParameters::~CParameters (void)
	CParameters::CParameters (const CParameters &value)
CParameters &	CParameters::operator= (const CParameters &value)
	CParameters_Base::CParameters_Base (void)
virtual	CParameters_Base::~CParameters_Base (void)
	CParameters_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CParameters_Base::IsSetMatrix (void) const
	Matrix used (-M) Check if a value has been assigned to Matrix data member. More...
bool	CParameters_Base::CanGetMatrix (void) const
	Check if it is safe to call GetMatrix method. More...
void	CParameters_Base::ResetMatrix (void)
	Reset Matrix data member. More...
const TMatrix &	CParameters_Base::GetMatrix (void) const
	Get the Matrix member data. More...
void	CParameters_Base::SetMatrix (const TMatrix &value)
	Assign a value to Matrix data member. More...
void	CParameters_Base::SetMatrix (TMatrix &&value)
TMatrix &	CParameters_Base::SetMatrix (void)
	Assign a value to Matrix data member. More...
bool	CParameters_Base::IsSetExpect (void) const
	Expectation threshold (-e) Check if a value has been assigned to Expect data member. More...
bool	CParameters_Base::CanGetExpect (void) const
	Check if it is safe to call GetExpect method. More...
void	CParameters_Base::ResetExpect (void)
	Reset Expect data member. More...
TExpect	CParameters_Base::GetExpect (void) const
	Get the Expect member data. More...
void	CParameters_Base::SetExpect (TExpect value)
	Assign a value to Expect data member. More...
TExpect &	CParameters_Base::SetExpect (void)
	Assign a value to Expect data member. More...
bool	CParameters_Base::IsSetInclude (void) const
	Inclusion threshold (-h) Check if a value has been assigned to Include data member. More...
bool	CParameters_Base::CanGetInclude (void) const
	Check if it is safe to call GetInclude method. More...
void	CParameters_Base::ResetInclude (void)
	Reset Include data member. More...
TInclude	CParameters_Base::GetInclude (void) const
	Get the Include member data. More...
void	CParameters_Base::SetInclude (TInclude value)
	Assign a value to Include data member. More...
TInclude &	CParameters_Base::SetInclude (void)
	Assign a value to Include data member. More...
bool	CParameters_Base::IsSetSc_match (void) const
	match score for NT (-r) Check if a value has been assigned to Sc_match data member. More...
bool	CParameters_Base::CanGetSc_match (void) const
	Check if it is safe to call GetSc_match method. More...
void	CParameters_Base::ResetSc_match (void)
	Reset Sc_match data member. More...
TSc_match	CParameters_Base::GetSc_match (void) const
	Get the Sc_match member data. More...
void	CParameters_Base::SetSc_match (TSc_match value)
	Assign a value to Sc_match data member. More...
TSc_match &	CParameters_Base::SetSc_match (void)
	Assign a value to Sc_match data member. More...
bool	CParameters_Base::IsSetSc_mismatch (void) const
	mismatch score for NT (-q) Check if a value has been assigned to Sc_mismatch data member. More...
bool	CParameters_Base::CanGetSc_mismatch (void) const
	Check if it is safe to call GetSc_mismatch method. More...
void	CParameters_Base::ResetSc_mismatch (void)
	Reset Sc_mismatch data member. More...
TSc_mismatch	CParameters_Base::GetSc_mismatch (void) const
	Get the Sc_mismatch member data. More...
void	CParameters_Base::SetSc_mismatch (TSc_mismatch value)
	Assign a value to Sc_mismatch data member. More...
TSc_mismatch &	CParameters_Base::SetSc_mismatch (void)
	Assign a value to Sc_mismatch data member. More...
bool	CParameters_Base::IsSetGap_open (void) const
	Gap opening cost (-G) Check if a value has been assigned to Gap_open data member. More...
bool	CParameters_Base::CanGetGap_open (void) const
	Check if it is safe to call GetGap_open method. More...
void	CParameters_Base::ResetGap_open (void)
	Reset Gap_open data member. More...
TGap_open	CParameters_Base::GetGap_open (void) const
	Get the Gap_open member data. More...
void	CParameters_Base::SetGap_open (TGap_open value)
	Assign a value to Gap_open data member. More...
TGap_open &	CParameters_Base::SetGap_open (void)
	Assign a value to Gap_open data member. More...
bool	CParameters_Base::IsSetGap_extend (void) const
	Gap extension cost (-E) Check if a value has been assigned to Gap_extend data member. More...
bool	CParameters_Base::CanGetGap_extend (void) const
	Check if it is safe to call GetGap_extend method. More...
void	CParameters_Base::ResetGap_extend (void)
	Reset Gap_extend data member. More...
TGap_extend	CParameters_Base::GetGap_extend (void) const
	Get the Gap_extend member data. More...
void	CParameters_Base::SetGap_extend (TGap_extend value)
	Assign a value to Gap_extend data member. More...
TGap_extend &	CParameters_Base::SetGap_extend (void)
	Assign a value to Gap_extend data member. More...
bool	CParameters_Base::IsSetFilter (void) const
	Filtering options (-F) Check if a value has been assigned to Filter data member. More...
bool	CParameters_Base::CanGetFilter (void) const
	Check if it is safe to call GetFilter method. More...
void	CParameters_Base::ResetFilter (void)
	Reset Filter data member. More...
const TFilter &	CParameters_Base::GetFilter (void) const
	Get the Filter member data. More...
void	CParameters_Base::SetFilter (const TFilter &value)
	Assign a value to Filter data member. More...
void	CParameters_Base::SetFilter (TFilter &&value)
TFilter &	CParameters_Base::SetFilter (void)
	Assign a value to Filter data member. More...
bool	CParameters_Base::IsSetPattern (void) const
	PHI-BLAST pattern Check if a value has been assigned to Pattern data member. More...
bool	CParameters_Base::CanGetPattern (void) const
	Check if it is safe to call GetPattern method. More...
void	CParameters_Base::ResetPattern (void)
	Reset Pattern data member. More...
const TPattern &	CParameters_Base::GetPattern (void) const
	Get the Pattern member data. More...
void	CParameters_Base::SetPattern (const TPattern &value)
	Assign a value to Pattern data member. More...
void	CParameters_Base::SetPattern (TPattern &&value)
TPattern &	CParameters_Base::SetPattern (void)
	Assign a value to Pattern data member. More...
bool	CParameters_Base::IsSetEntrez_query (void) const
	Limit of request to Entrez query Check if a value has been assigned to Entrez_query data member. More...
bool	CParameters_Base::CanGetEntrez_query (void) const
	Check if it is safe to call GetEntrez_query method. More...
void	CParameters_Base::ResetEntrez_query (void)
	Reset Entrez_query data member. More...
const TEntrez_query &	CParameters_Base::GetEntrez_query (void) const
	Get the Entrez_query member data. More...
void	CParameters_Base::SetEntrez_query (const TEntrez_query &value)
	Assign a value to Entrez_query data member. More...
void	CParameters_Base::SetEntrez_query (TEntrez_query &&value)
TEntrez_query &	CParameters_Base::SetEntrez_query (void)
	Assign a value to Entrez_query data member. More...
bool	CParameters_Base::IsSetCbs (void) const
	composition-based stats (numbers correspond to numbering in stand-alone application parameter -comp_based_stats). More...
bool	CParameters_Base::CanGetCbs (void) const
	Check if it is safe to call GetCbs method. More...
void	CParameters_Base::ResetCbs (void)
	Reset Cbs data member. More...
TCbs	CParameters_Base::GetCbs (void) const
	Get the Cbs member data. More...
void	CParameters_Base::SetCbs (TCbs value)
	Assign a value to Cbs data member. More...
TCbs &	CParameters_Base::SetCbs (void)
	Assign a value to Cbs data member. More...
bool	CParameters_Base::IsSetQuery_gencode (void) const
	genetic code for query (blastx or tblastx) Check if a value has been assigned to Query_gencode data member. More...
bool	CParameters_Base::CanGetQuery_gencode (void) const
	Check if it is safe to call GetQuery_gencode method. More...
void	CParameters_Base::ResetQuery_gencode (void)
	Reset Query_gencode data member. More...
TQuery_gencode	CParameters_Base::GetQuery_gencode (void) const
	Get the Query_gencode member data. More...
void	CParameters_Base::SetQuery_gencode (TQuery_gencode value)
	Assign a value to Query_gencode data member. More...
TQuery_gencode &	CParameters_Base::SetQuery_gencode (void)
	Assign a value to Query_gencode data member. More...
bool	CParameters_Base::IsSetDb_gencode (void) const
	genetic code for db or subjects (tblastn or tblastx) Check if a value has been assigned to Db_gencode data member. More...
bool	CParameters_Base::CanGetDb_gencode (void) const
	Check if it is safe to call GetDb_gencode method. More...
void	CParameters_Base::ResetDb_gencode (void)
	Reset Db_gencode data member. More...
TDb_gencode	CParameters_Base::GetDb_gencode (void) const
	Get the Db_gencode member data. More...
void	CParameters_Base::SetDb_gencode (TDb_gencode value)
	Assign a value to Db_gencode data member. More...
TDb_gencode &	CParameters_Base::SetDb_gencode (void)
	Assign a value to Db_gencode data member. More...
bool	CParameters_Base::IsSetBl2seq_mode (void) const
	bl2seq mode Check if a value has been assigned to Bl2seq_mode data member. More...
bool	CParameters_Base::CanGetBl2seq_mode (void) const
	Check if it is safe to call GetBl2seq_mode method. More...
void	CParameters_Base::ResetBl2seq_mode (void)
	Reset Bl2seq_mode data member. More...
const TBl2seq_mode &	CParameters_Base::GetBl2seq_mode (void) const
	Get the Bl2seq_mode member data. More...
void	CParameters_Base::SetBl2seq_mode (const TBl2seq_mode &value)
	Assign a value to Bl2seq_mode data member. More...
void	CParameters_Base::SetBl2seq_mode (TBl2seq_mode &&value)
TBl2seq_mode &	CParameters_Base::SetBl2seq_mode (void)
	Assign a value to Bl2seq_mode data member. More...
virtual void	CParameters_Base::Reset (void)
	Reset the whole object. More...
	CParameters_Base::CParameters_Base (const CParameters_Base &)
CParameters_Base &	CParameters_Base::operator= (const CParameters_Base &)
	CRange< Position >::CRange (void)
	CRange< Position >::~CRange (void)
	CRange< Position >::CRange (const CRange &value)
CRange &	CRange< Position >::operator= (const CRange &value)
	CRange_Base::CRange_Base (void)
virtual	CRange_Base::~CRange_Base (void)
	CRange_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CRange_Base::IsSetFrom (void) const
	Beginning of masked range (one-offset) Check if a value has been assigned to From data member. More...
bool	CRange_Base::CanGetFrom (void) const
	Check if it is safe to call GetFrom method. More...
void	CRange_Base::ResetFrom (void)
	Reset From data member. More...
TFrom	CRange_Base::GetFrom (void) const
	Get the From member data. More...
void	CRange_Base::SetFrom (TFrom value)
	Assign a value to From data member. More...
TFrom &	CRange_Base::SetFrom (void)
	Assign a value to From data member. More...
bool	CRange_Base::IsSetTo (void) const
	End of masked range (one-offset) Check if a value has been assigned to To data member. More...
bool	CRange_Base::CanGetTo (void) const
	Check if it is safe to call GetTo method. More...
void	CRange_Base::ResetTo (void)
	Reset To data member. More...
TTo	CRange_Base::GetTo (void) const
	Get the To member data. More...
void	CRange_Base::SetTo (TTo value)
	Assign a value to To data member. More...
TTo &	CRange_Base::SetTo (void)
	Assign a value to To data member. More...
virtual void	CRange_Base::Reset (void)
	Reset the whole object. More...
	CRange_Base::CRange_Base (const CRange_Base &)
CRange_Base &	CRange_Base::operator= (const CRange_Base &)
	CReport::CReport (void)
	CReport::~CReport (void)
	CReport::CReport (const CReport &value)
CReport &	CReport::operator= (const CReport &value)
	CReport_Base::CReport_Base (void)
virtual	CReport_Base::~CReport_Base (void)
	CReport_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CReport_Base::IsSetProgram (void) const
	BLAST program: blastp, tblastx etc. More...
bool	CReport_Base::CanGetProgram (void) const
	Check if it is safe to call GetProgram method. More...
void	CReport_Base::ResetProgram (void)
	Reset Program data member. More...
const TProgram &	CReport_Base::GetProgram (void) const
	Get the Program member data. More...
void	CReport_Base::SetProgram (const TProgram &value)
	Assign a value to Program data member. More...
void	CReport_Base::SetProgram (TProgram &&value)
TProgram &	CReport_Base::SetProgram (void)
	Assign a value to Program data member. More...
bool	CReport_Base::IsSetVersion (void) const
	Program version Check if a value has been assigned to Version data member. More...
bool	CReport_Base::CanGetVersion (void) const
	Check if it is safe to call GetVersion method. More...
void	CReport_Base::ResetVersion (void)
	Reset Version data member. More...
const TVersion &	CReport_Base::GetVersion (void) const
	Get the Version member data. More...
void	CReport_Base::SetVersion (const TVersion &value)
	Assign a value to Version data member. More...
void	CReport_Base::SetVersion (TVersion &&value)
TVersion &	CReport_Base::SetVersion (void)
	Assign a value to Version data member. More...
bool	CReport_Base::IsSetReference (void) const
	Steven, David, Tom and others Check if a value has been assigned to Reference data member. More...
bool	CReport_Base::CanGetReference (void) const
	Check if it is safe to call GetReference method. More...
void	CReport_Base::ResetReference (void)
	Reset Reference data member. More...
const TReference &	CReport_Base::GetReference (void) const
	Get the Reference member data. More...
void	CReport_Base::SetReference (const TReference &value)
	Assign a value to Reference data member. More...
void	CReport_Base::SetReference (TReference &&value)
TReference &	CReport_Base::SetReference (void)
	Assign a value to Reference data member. More...
bool	CReport_Base::IsSetSearch_target (void) const
	Check if a value has been assigned to Search_target data member. More...
bool	CReport_Base::CanGetSearch_target (void) const
	Check if it is safe to call GetSearch_target method. More...
void	CReport_Base::ResetSearch_target (void)
	Reset Search_target data member. More...
const TSearch_target &	CReport_Base::GetSearch_target (void) const
	Get the Search_target member data. More...
void	CReport_Base::SetSearch_target (TSearch_target &value)
	Assign a value to Search_target data member. More...
TSearch_target &	CReport_Base::SetSearch_target (void)
	Assign a value to Search_target data member. More...
bool	CReport_Base::IsSetParams (void) const
	search parameters Check if a value has been assigned to Params data member. More...
bool	CReport_Base::CanGetParams (void) const
	Check if it is safe to call GetParams method. More...
void	CReport_Base::ResetParams (void)
	Reset Params data member. More...
const TParams &	CReport_Base::GetParams (void) const
	Get the Params member data. More...
void	CReport_Base::SetParams (TParams &value)
	Assign a value to Params data member. More...
TParams &	CReport_Base::SetParams (void)
	Assign a value to Params data member. More...
bool	CReport_Base::IsSetResults (void) const
	Check if a value has been assigned to Results data member. More...
bool	CReport_Base::CanGetResults (void) const
	Check if it is safe to call GetResults method. More...
void	CReport_Base::ResetResults (void)
	Reset Results data member. More...
const TResults &	CReport_Base::GetResults (void) const
	Get the Results member data. More...
void	CReport_Base::SetResults (TResults &value)
	Assign a value to Results data member. More...
TResults &	CReport_Base::SetResults (void)
	Assign a value to Results data member. More...
virtual void	CReport_Base::Reset (void)
	Reset the whole object. More...
	CReport_Base::CReport_Base (const CReport_Base &)
CReport_Base &	CReport_Base::operator= (const CReport_Base &)
	CResults::CResults (void)
	CResults::~CResults (void)
	CResults::CResults (const CResults &value)
CResults &	CResults::operator= (const CResults &value)
	CResults_Base::CResults_Base (void)
virtual	CResults_Base::~CResults_Base (void)
	CResults_Base::DECLARE_INTERNAL_TYPE_INFO ()
virtual void	CResults_Base::Reset (void)
	Reset the whole object. More...
virtual void	CResults_Base::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CResults_Base::Which (void) const
	Which variant is currently selected. More...
void	CResults_Base::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CResults_Base::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CResults_Base::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CResults_Base::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CResults_Base::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CResults_Base::IsIterations (void) const
	Check if variant Iterations is selected. More...
const TIterations &	CResults_Base::GetIterations (void) const
	Get the variant data. More...
TIterations &	CResults_Base::SetIterations (void)
	Select the variant. More...
bool	CResults_Base::IsSearch (void) const
	Check if variant Search is selected. More...
const TSearch &	CResults_Base::GetSearch (void) const
	Get the variant data. More...
TSearch &	CResults_Base::SetSearch (void)
	Select the variant. More...
void	CResults_Base::SetSearch (TSearch &value)
	Select the variant and set its data. More...
bool	CResults_Base::IsBl2seq (void) const
	Check if variant Bl2seq is selected. More...
const TBl2seq &	CResults_Base::GetBl2seq (void) const
	Get the variant data. More...
TBl2seq &	CResults_Base::SetBl2seq (void)
	Select the variant. More...
	CResults_Base::CResults_Base (const CResults_Base &)
CResults_Base &	CResults_Base::operator= (const CResults_Base &)
void	CResults_Base::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
	CSearch< LEGACY, NHITS >::CSearch (void)
	CSearch< LEGACY, NHITS >::~CSearch (void)
	CSearch< LEGACY, NHITS >::CSearch (const CSearch &value)
CSearch &	CSearch< LEGACY, NHITS >::operator= (const CSearch &value)
	CSearch_Base< LEGACY, NHITS, derived_t >::CSearch_Base (void)
virtual	CSearch_Base< LEGACY, NHITS, derived_t >::~CSearch_Base (void)
	CSearch_Base< LEGACY, NHITS, derived_t >::DECLARE_INTERNAL_TYPE_INFO ()
bool	CSearch_Base< LEGACY, NHITS, derived_t >::IsSetQuery_id (void) const
	SeqId of query Check if a value has been assigned to Query_id data member. More...
bool	CSearch_Base< LEGACY, NHITS, derived_t >::CanGetQuery_id (void) const
	Check if it is safe to call GetQuery_id method. More...
void	CSearch_Base< LEGACY, NHITS, derived_t >::ResetQuery_id (void)
	Reset Query_id data member. More...
const TQuery_id &	CSearch_Base< LEGACY, NHITS, derived_t >::GetQuery_id (void) const
	Get the Query_id member data. More...
void	CSearch_Base< LEGACY, NHITS, derived_t >::SetQuery_id (const TQuery_id &value)
	Assign a value to Query_id data member. More...
void	CSearch_Base< LEGACY, NHITS, derived_t >::SetQuery_id (TQuery_id &&value)
TQuery_id &	CSearch_Base< LEGACY, NHITS, derived_t >::SetQuery_id (void)
	Assign a value to Query_id data member. More...
bool	CSearch_Base< LEGACY, NHITS, derived_t >::IsSetQuery_title (void) const
	Definition line of query Check if a value has been assigned to Query_title data member. More...
bool	CSearch_Base< LEGACY, NHITS, derived_t >::CanGetQuery_title (void) const
	Check if it is safe to call GetQuery_title method. More...
void	CSearch_Base< LEGACY, NHITS, derived_t >::ResetQuery_title (void)
	Reset Query_title data member. More...
const TQuery_title &	CSearch_Base< LEGACY, NHITS, derived_t >::GetQuery_title (void) const
	Get the Query_title member data. More...
void	CSearch_Base< LEGACY, NHITS, derived_t >::SetQuery_title (const TQuery_title &value)
	Assign a value to Query_title data member. More...
void	CSearch_Base< LEGACY, NHITS, derived_t >::SetQuery_title (TQuery_title &&value)
TQuery_title &	CSearch_Base< LEGACY, NHITS, derived_t >::SetQuery_title (void)
	Assign a value to Query_title data member. More...
bool	CSearch_Base< LEGACY, NHITS, derived_t >::IsSetQuery_len (void) const
	length of query sequence Check if a value has been assigned to Query_len data member. More...
bool	CSearch_Base< LEGACY, NHITS, derived_t >::CanGetQuery_len (void) const
	Check if it is safe to call GetQuery_len method. More...
void	CSearch_Base< LEGACY, NHITS, derived_t >::ResetQuery_len (void)
	Reset Query_len data member. More...
TQuery_len	CSearch_Base< LEGACY, NHITS, derived_t >::GetQuery_len (void) const
	Get the Query_len member data. More...
void	CSearch_Base< LEGACY, NHITS, derived_t >::SetQuery_len (TQuery_len value)
	Assign a value to Query_len data member. More...
TQuery_len &	CSearch_Base< LEGACY, NHITS, derived_t >::SetQuery_len (void)
	Assign a value to Query_len data member. More...
bool	CSearch_Base< LEGACY, NHITS, derived_t >::IsSetQuery_masking (void) const
	Masked offsets. More...
bool	CSearch_Base< LEGACY, NHITS, derived_t >::CanGetQuery_masking (void) const
	Check if it is safe to call GetQuery_masking method. More...
void	CSearch_Base< LEGACY, NHITS, derived_t >::ResetQuery_masking (void)
	Reset Query_masking data member. More...
const TQuery_masking &	CSearch_Base< LEGACY, NHITS, derived_t >::GetQuery_masking (void) const
	Get the Query_masking member data. More...
TQuery_masking &	CSearch_Base< LEGACY, NHITS, derived_t >::SetQuery_masking (void)
	Assign a value to Query_masking data member. More...
bool	CSearch_Base< LEGACY, NHITS, derived_t >::IsSetHits (void) const
	Hits one for every db sequence Check if a value has been assigned to Hits data member. More...
bool	CSearch_Base< LEGACY, NHITS, derived_t >::CanGetHits (void) const
	Check if it is safe to call GetHits method. More...
void	CSearch_Base< LEGACY, NHITS, derived_t >::ResetHits (void)
	Reset Hits data member. More...
const THits &	CSearch_Base< LEGACY, NHITS, derived_t >::GetHits (void) const
	Get the Hits member data. More...
THits &	CSearch_Base< LEGACY, NHITS, derived_t >::SetHits (void)
	Assign a value to Hits data member. More...
bool	CSearch_Base< LEGACY, NHITS, derived_t >::IsSetStat (void) const
	search statistics Check if a value has been assigned to Stat data member. More...
bool	CSearch_Base< LEGACY, NHITS, derived_t >::CanGetStat (void) const
	Check if it is safe to call GetStat method. More...
void	CSearch_Base< LEGACY, NHITS, derived_t >::ResetStat (void)
	Reset Stat data member. More...
const TStat &	CSearch_Base< LEGACY, NHITS, derived_t >::GetStat (void) const
	Get the Stat member data. More...
void	CSearch_Base< LEGACY, NHITS, derived_t >::SetStat (TStat &value)
	Assign a value to Stat data member. More...
TStat &	CSearch_Base< LEGACY, NHITS, derived_t >::SetStat (void)
	Assign a value to Stat data member. More...
bool	CSearch_Base< LEGACY, NHITS, derived_t >::IsSetMessage (void) const
	Some (error?) information Check if a value has been assigned to Message data member. More...
bool	CSearch_Base< LEGACY, NHITS, derived_t >::CanGetMessage (void) const
	Check if it is safe to call GetMessage method. More...
void	CSearch_Base< LEGACY, NHITS, derived_t >::ResetMessage (void)
	Reset Message data member. More...
const TMessage &	CSearch_Base< LEGACY, NHITS, derived_t >::GetMessage (void) const
	Get the Message member data. More...
void	CSearch_Base< LEGACY, NHITS, derived_t >::SetMessage (const TMessage &value)
	Assign a value to Message data member. More...
void	CSearch_Base< LEGACY, NHITS, derived_t >::SetMessage (TMessage &&value)
TMessage &	CSearch_Base< LEGACY, NHITS, derived_t >::SetMessage (void)
	Assign a value to Message data member. More...
virtual void	CSearch_Base< LEGACY, NHITS, derived_t >::Reset (void)
	Reset the whole object. More...
	CSearch_Base< LEGACY, NHITS, derived_t >::CSearch_Base (const CSearch_Base &)
CSearch_Base &	CSearch_Base< LEGACY, NHITS, derived_t >::operator= (const CSearch_Base &)
	CStatistics::CStatistics (void)
	CStatistics::~CStatistics (void)
	CStatistics::CStatistics (const CStatistics &value)
CStatistics &	CStatistics::operator= (const CStatistics &value)
	CStatistics_Base::CStatistics_Base (void)
virtual	CStatistics_Base::~CStatistics_Base (void)
	CStatistics_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CStatistics_Base::IsSetDb_num (void) const
	Number of sequences in BLAST db Check if a value has been assigned to Db_num data member. More...
bool	CStatistics_Base::CanGetDb_num (void) const
	Check if it is safe to call GetDb_num method. More...
void	CStatistics_Base::ResetDb_num (void)
	Reset Db_num data member. More...
TDb_num	CStatistics_Base::GetDb_num (void) const
	Get the Db_num member data. More...
void	CStatistics_Base::SetDb_num (TDb_num value)
	Assign a value to Db_num data member. More...
TDb_num &	CStatistics_Base::SetDb_num (void)
	Assign a value to Db_num data member. More...
bool	CStatistics_Base::IsSetDb_len (void) const
	Length of BLAST db Check if a value has been assigned to Db_len data member. More...
bool	CStatistics_Base::CanGetDb_len (void) const
	Check if it is safe to call GetDb_len method. More...
void	CStatistics_Base::ResetDb_len (void)
	Reset Db_len data member. More...
TDb_len	CStatistics_Base::GetDb_len (void) const
	Get the Db_len member data. More...
void	CStatistics_Base::SetDb_len (TDb_len value)
	Assign a value to Db_len data member. More...
TDb_len &	CStatistics_Base::SetDb_len (void)
	Assign a value to Db_len data member. More...
bool	CStatistics_Base::IsSetHsp_len (void) const
	Effective HSP length Check if a value has been assigned to Hsp_len data member. More...
bool	CStatistics_Base::CanGetHsp_len (void) const
	Check if it is safe to call GetHsp_len method. More...
void	CStatistics_Base::ResetHsp_len (void)
	Reset Hsp_len data member. More...
THsp_len	CStatistics_Base::GetHsp_len (void) const
	Get the Hsp_len member data. More...
void	CStatistics_Base::SetHsp_len (THsp_len value)
	Assign a value to Hsp_len data member. More...
THsp_len &	CStatistics_Base::SetHsp_len (void)
	Assign a value to Hsp_len data member. More...
bool	CStatistics_Base::IsSetEff_space (void) const
	Effective search space Check if a value has been assigned to Eff_space data member. More...
bool	CStatistics_Base::CanGetEff_space (void) const
	Check if it is safe to call GetEff_space method. More...
void	CStatistics_Base::ResetEff_space (void)
	Reset Eff_space data member. More...
TEff_space	CStatistics_Base::GetEff_space (void) const
	Get the Eff_space member data. More...
void	CStatistics_Base::SetEff_space (TEff_space value)
	Assign a value to Eff_space data member. More...
TEff_space &	CStatistics_Base::SetEff_space (void)
	Assign a value to Eff_space data member. More...
bool	CStatistics_Base::IsSetKappa (void) const
	Karlin-Altschul parameter K Check if a value has been assigned to Kappa data member. More...
bool	CStatistics_Base::CanGetKappa (void) const
	Check if it is safe to call GetKappa method. More...
void	CStatistics_Base::ResetKappa (void)
	Reset Kappa data member. More...
TKappa	CStatistics_Base::GetKappa (void) const
	Get the Kappa member data. More...
void	CStatistics_Base::SetKappa (TKappa value)
	Assign a value to Kappa data member. More...
TKappa &	CStatistics_Base::SetKappa (void)
	Assign a value to Kappa data member. More...
bool	CStatistics_Base::IsSetLambda (void) const
	Karlin-Altschul parameter Lambda Check if a value has been assigned to Lambda data member. More...
bool	CStatistics_Base::CanGetLambda (void) const
	Check if it is safe to call GetLambda method. More...
void	CStatistics_Base::ResetLambda (void)
	Reset Lambda data member. More...
TLambda	CStatistics_Base::GetLambda (void) const
	Get the Lambda member data. More...
void	CStatistics_Base::SetLambda (TLambda value)
	Assign a value to Lambda data member. More...
TLambda &	CStatistics_Base::SetLambda (void)
	Assign a value to Lambda data member. More...
bool	CStatistics_Base::IsSetEntropy (void) const
	Karlin-Altschul parameter H Check if a value has been assigned to Entropy data member. More...
bool	CStatistics_Base::CanGetEntropy (void) const
	Check if it is safe to call GetEntropy method. More...
void	CStatistics_Base::ResetEntropy (void)
	Reset Entropy data member. More...
TEntropy	CStatistics_Base::GetEntropy (void) const
	Get the Entropy member data. More...
void	CStatistics_Base::SetEntropy (TEntropy value)
	Assign a value to Entropy data member. More...
TEntropy &	CStatistics_Base::SetEntropy (void)
	Assign a value to Entropy data member. More...
virtual void	CStatistics_Base::Reset (void)
	Reset the whole object. More...
	CStatistics_Base::CStatistics_Base (const CStatistics_Base &)
CStatistics_Base &	CStatistics_Base::operator= (const CStatistics_Base &)
	CTarget::CTarget (void)
	CTarget::~CTarget (void)
	CTarget::CTarget (const CTarget &value)
CTarget &	CTarget::operator= (const CTarget &value)
	CTarget_Base::CTarget_Base (void)
virtual	CTarget_Base::~CTarget_Base (void)
	CTarget_Base::DECLARE_INTERNAL_TYPE_INFO ()
virtual void	CTarget_Base::Reset (void)
	Reset the whole object. More...
virtual void	CTarget_Base::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CTarget_Base::Which (void) const
	Which variant is currently selected. More...
void	CTarget_Base::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CTarget_Base::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CTarget_Base::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CTarget_Base::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CTarget_Base::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CTarget_Base::IsDb (void) const
	Check if variant Db is selected. More...
const TDb &	CTarget_Base::GetDb (void) const
	Get the variant data. More...
TDb &	CTarget_Base::SetDb (void)
	Select the variant. More...
void	CTarget_Base::SetDb (const TDb &value)
	Select the variant and set its data. More...
bool	CTarget_Base::IsSubjects (void) const
	Check if variant Subjects is selected. More...
const TSubjects &	CTarget_Base::GetSubjects (void) const
	Get the variant data. More...
TSubjects &	CTarget_Base::SetSubjects (void)
	Select the variant. More...
	CTarget_Base::CTarget_Base (const CTarget_Base &)
CTarget_Base &	CTarget_Base::operator= (const CTarget_Base &)
void	CTarget_Base::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)

Variables
Uint4	CBlastOutput2_Base::m_set_State [1]
CRef< TReport >	CBlastOutput2_Base::m_Report
CRef< TError >	CBlastOutput2_Base::m_Error
Uint4	CBlastXML2_Base::m_set_State [1]
list< CRef< CBlastOutput2 > >	CBlastXML2_Base::m_data
Uint4	CErr_Base::m_set_State [1]
int	CErr_Base::m_Code
string	CErr_Base::m_Message
list< CRef< CHitDescr > >	CHit_Base::m_Description
Uint4	CHitDescr_Base::m_set_State [1]
string	CHitDescr_Base::m_Id
string	CHitDescr_Base::m_Accession
string	CHitDescr_Base::m_Title
int	CHitDescr_Base::m_Taxid
string	CHitDescr_Base::m_Sciname
string	CHsp_Base::m_Query_strand
string	CHsp_Base::m_Hit_strand
CRef< TSearch >	CIteration_Base::m_Search
int	CParameters_Base::m_Cbs
int	CParameters_Base::m_Query_gencode
int	CParameters_Base::m_Db_gencode
string	CParameters_Base::m_Bl2seq_mode
Uint4	CRange_Base::m_set_State [1]
int	CRange_Base::m_From
int	CRange_Base::m_To
Uint4	CReport_Base::m_set_State [1]
string	CReport_Base::m_Program
string	CReport_Base::m_Version
string	CReport_Base::m_Reference
CRef< TSearch_target >	CReport_Base::m_Search_target
CRef< TParams >	CReport_Base::m_Params
CRef< TResults >	CReport_Base::m_Results
E_Choice	CResults_Base::m_choice
static const char *const	CResults_Base::sm_SelectionNames []
NCBI_NS_NCBI::CUnionBuffer< TIterations >   CResults_Base::m_Iterations
NCBI_NS_NCBI::CUnionBuffer< TBl2seq >   CResults_Base::m_Bl2seq
NCBI_NS_NCBI::CSerialObject *   CResults_Base::m_object
union {
NCBI_NS_NCBI::CUnionBuffer< TIterations >   CResults_Base::m_Iterations
NCBI_NS_NCBI::CUnionBuffer< TBl2seq >   CResults_Base::m_Bl2seq
NCBI_NS_NCBI::CSerialObject *   CResults_Base::m_object
};
Uint4	CSearch_Base< LEGACY, NHITS, derived_t >::m_set_State [1]
string	CSearch_Base< LEGACY, NHITS, derived_t >::m_Query_id
string	CSearch_Base< LEGACY, NHITS, derived_t >::m_Query_title
int	CSearch_Base< LEGACY, NHITS, derived_t >::m_Query_len
list< CRef< CRange > >	CSearch_Base< LEGACY, NHITS, derived_t >::m_Query_masking
list< CRef< CHit > >	CSearch_Base< LEGACY, NHITS, derived_t >::m_Hits
CRef< TStat >	CSearch_Base< LEGACY, NHITS, derived_t >::m_Stat
string	CSearch_Base< LEGACY, NHITS, derived_t >::m_Message
Int8	CStatistics_Base::m_Db_num
Int8	CStatistics_Base::m_Eff_space
E_Choice	CTarget_Base::m_choice
static const char *const	CTarget_Base::sm_SelectionNames []
NCBI_NS_NCBI::CUnionBuffer< TSubjects >   CTarget_Base::m_Subjects
NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CTarget_Base::m_string
void *   CTarget_Base::m_dummy_pointer_for_alignment
union {
NCBI_NS_NCBI::CUnionBuffer< TSubjects >   CTarget_Base::m_Subjects
NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CTarget_Base::m_string
void *   CTarget_Base::m_dummy_pointer_for_alignment
};

Detailed Description

Typedef Documentation

TAccession

typedef string CHitDescr_Base::TAccession

Definition at line 93 of file HitDescr_.hpp.

TAlign_len

typedef int CHsp_Base::TAlign_len

Definition at line 108 of file Hsp_.hpp.

TBit_score

typedef double CHsp_Base::TBit_score

Definition at line 92 of file Hsp_.hpp.

TBl2seq

typedef list< CRef< CSearch > > CResults_Base::TBl2seq

Definition at line 158 of file Results_.hpp.

TBl2seq_mode

typedef string CParameters_Base::TBl2seq_mode

Definition at line 104 of file Parameters_.hpp.

TCbs

typedef int CParameters_Base::TCbs

Definition at line 101 of file Parameters_.hpp.

TCode

typedef int CErr_Base::TCode

Definition at line 91 of file Err_.hpp.

Tdata

typedef list< CRef< CBlastOutput2 > > CBlastXML2_Base::Tdata

Definition at line 95 of file BlastXML2_.hpp.

TDb

typedef string CTarget_Base::TDb

Definition at line 151 of file Target_.hpp.

TDb_gencode

typedef int CParameters_Base::TDb_gencode

Definition at line 103 of file Parameters_.hpp.

TDb_len

typedef Int8 CStatistics_Base::TDb_len

Definition at line 88 of file Statistics_.hpp.

TDb_num

typedef Int8 CStatistics_Base::TDb_num

Definition at line 87 of file Statistics_.hpp.

TDensity

typedef int CHsp_Base::TDensity

Definition at line 97 of file Hsp_.hpp.

TDescription

typedef list< CRef< CHitDescr > > CHit_Base::TDescription

Definition at line 97 of file Hit_.hpp.

TEff_space

typedef Int8 CStatistics_Base::TEff_space

Definition at line 90 of file Statistics_.hpp.

TEntrez_query

typedef string CParameters_Base::TEntrez_query

Definition at line 100 of file Parameters_.hpp.

TEntropy

typedef double CStatistics_Base::TEntropy

Definition at line 93 of file Statistics_.hpp.

TError

typedef CErr CBlastOutput2_Base::TError

Definition at line 93 of file BlastOutput2_.hpp.

TEvalue

typedef double CHsp_Base::TEvalue

Definition at line 94 of file Hsp_.hpp.

TExpect

typedef double CParameters_Base::TExpect

Definition at line 92 of file Parameters_.hpp.

TFilter

typedef string CParameters_Base::TFilter

Definition at line 98 of file Parameters_.hpp.

TFrom

typedef int CRange_Base::TFrom

Definition at line 88 of file Range_.hpp.

TGap_extend

typedef int CParameters_Base::TGap_extend

Definition at line 97 of file Parameters_.hpp.

TGap_open

typedef int CParameters_Base::TGap_open

Definition at line 96 of file Parameters_.hpp.

TGaps

typedef int CHsp_Base::TGaps

Definition at line 109 of file Hsp_.hpp.

THit_frame

typedef int CHsp_Base::THit_frame

Definition at line 107 of file Hsp_.hpp.

THit_from

typedef int CHsp_Base::THit_from

Definition at line 104 of file Hsp_.hpp.

THit_strand

typedef string CHsp_Base::THit_strand

Definition at line 106 of file Hsp_.hpp.

THit_to

typedef int CHsp_Base::THit_to

Definition at line 105 of file Hsp_.hpp.

THits

template<bool LEGACY, unsigned long NHITS, typename derived_t >

typedef list< CRef< CHit > > CSearch_Base< LEGACY, NHITS, derived_t >::THits

Definition at line 102 of file Search_.hpp.

THseq

typedef string CHsp_Base::THseq

Definition at line 111 of file Hsp_.hpp.

THsp_len

typedef int CStatistics_Base::THsp_len

Definition at line 89 of file Statistics_.hpp.

THsps

typedef list< CRef< CHsp > > CHit_Base::THsps

Definition at line 99 of file Hit_.hpp.

TId

typedef string CHitDescr_Base::TId

Definition at line 92 of file HitDescr_.hpp.

TIdentity

typedef int CHsp_Base::TIdentity

Definition at line 95 of file Hsp_.hpp.

TInclude

typedef double CParameters_Base::TInclude

Definition at line 93 of file Parameters_.hpp.

TIter_num

typedef int CIteration_Base::TIter_num

Definition at line 91 of file Iteration_.hpp.

TIterations

typedef list< CRef< CIteration > > CResults_Base::TIterations

Definition at line 156 of file Results_.hpp.

TKappa

typedef double CStatistics_Base::TKappa

Definition at line 91 of file Statistics_.hpp.

TLambda

typedef double CStatistics_Base::TLambda

Definition at line 92 of file Statistics_.hpp.

TLen

typedef int CHit_Base::TLen

Definition at line 98 of file Hit_.hpp.

TMatrix

typedef string CParameters_Base::TMatrix

Definition at line 91 of file Parameters_.hpp.

TmemberIndex [1/11]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CBlastOutput2_Base::TmemberIndex

Definition at line 101 of file BlastOutput2_.hpp.

TmemberIndex [2/11]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CErr_Base::TmemberIndex

Definition at line 100 of file Err_.hpp.

TmemberIndex [3/11]

typedef Tparent::CMemberIndex<E_memberIndex, 5> CHit_Base::TmemberIndex

Definition at line 109 of file Hit_.hpp.

TmemberIndex [4/11]

typedef Tparent::CMemberIndex<E_memberIndex, 6> CHitDescr_Base::TmemberIndex

Definition at line 107 of file HitDescr_.hpp.

TmemberIndex [5/11]

typedef Tparent::CMemberIndex<E_memberIndex, 23> CHsp_Base::TmemberIndex

Definition at line 140 of file Hsp_.hpp.

TmemberIndex [6/11]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CIteration_Base::TmemberIndex

Definition at line 100 of file Iteration_.hpp.

TmemberIndex [7/11]

typedef Tparent::CMemberIndex<E_memberIndex, 15> CParameters_Base::TmemberIndex

Definition at line 124 of file Parameters_.hpp.

TmemberIndex [8/11]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CRange_Base::TmemberIndex

Definition at line 97 of file Range_.hpp.

TmemberIndex [9/11]

typedef Tparent::CMemberIndex<E_memberIndex, 7> CReport_Base::TmemberIndex

Definition at line 114 of file Report_.hpp.

TmemberIndex [10/11]

template<bool LEGACY, unsigned long NHITS, typename derived_t >

typedef Tparent::CMemberIndex<E_memberIndex, 8> CSearch_Base< LEGACY, NHITS, derived_t >::TmemberIndex

Definition at line 117 of file Search_.hpp.

TmemberIndex [11/11]

typedef Tparent::CMemberIndex<E_memberIndex, 8> CStatistics_Base::TmemberIndex

Definition at line 106 of file Statistics_.hpp.

TMessage [1/2]

typedef string CErr_Base::TMessage

Definition at line 92 of file Err_.hpp.

TMessage [2/2]

template<bool LEGACY, unsigned long NHITS, typename derived_t >

typedef string CSearch_Base< LEGACY, NHITS, derived_t >::TMessage

Definition at line 104 of file Search_.hpp.

TMidline

typedef string CHsp_Base::TMidline

Definition at line 112 of file Hsp_.hpp.

TNum [1/2]

typedef int CHit_Base::TNum

Definition at line 96 of file Hit_.hpp.

TNum [2/2]

typedef int CHsp_Base::TNum

Definition at line 91 of file Hsp_.hpp.

TParams

typedef CParameters CReport_Base::TParams

Definition at line 101 of file Report_.hpp.

Tparent [1/28]

typedef CBlastOutput2_Base CBlastOutput2::Tparent

private

Definition at line 69 of file BlastOutput2.hpp.

Tparent [2/28]

typedef CSerialObject CBlastOutput2_Base::Tparent

private

Definition at line 81 of file BlastOutput2_.hpp.

Tparent [3/28]

typedef CBlastXML2_Base CBlastXML2::Tparent

private

Definition at line 69 of file BlastXML2.hpp.

Tparent [4/28]

typedef CSerialObject CBlastXML2_Base::Tparent

private

Definition at line 84 of file BlastXML2_.hpp.

Tparent [5/28]

typedef CErr_Base CErr::Tparent

private

Definition at line 69 of file Err.hpp.

Tparent [6/28]

typedef CSerialObject CErr_Base::Tparent

private

Definition at line 80 of file Err_.hpp.

Tparent [7/28]

typedef CHit_Base CHit::Tparent

private

Definition at line 69 of file Hit.hpp.

Tparent [8/28]

typedef CSerialObject CHit_Base::Tparent

private

Definition at line 85 of file Hit_.hpp.

Tparent [9/28]

typedef CHitDescr_Base CHitDescr::Tparent

private

Definition at line 69 of file HitDescr.hpp.

Tparent [10/28]

typedef CSerialObject CHitDescr_Base::Tparent

private

Definition at line 81 of file HitDescr_.hpp.

Tparent [11/28]

typedef CHsp_Base CHsp::Tparent

private

Definition at line 69 of file Hsp.hpp.

Tparent [12/28]

typedef CSerialObject CHsp_Base::Tparent

private

Definition at line 80 of file Hsp_.hpp.

Tparent [13/28]

typedef CIteration_Base CIteration::Tparent

private

Definition at line 69 of file Iteration.hpp.

Tparent [14/28]

typedef CSerialObject CIteration_Base::Tparent

private

Definition at line 80 of file Iteration_.hpp.

Tparent [15/28]

typedef CParameters_Base CParameters::Tparent

private

Definition at line 69 of file Parameters.hpp.

Tparent [16/28]

typedef CSerialObject CParameters_Base::Tparent

private

Definition at line 80 of file Parameters_.hpp.

Tparent [17/28]

template<class Position >

typedef CRange_Base CRange< Position >::Tparent

private

Definition at line 69 of file Range.hpp.

Tparent [18/28]

typedef CSerialObject CRange_Base::Tparent

private

Definition at line 77 of file Range_.hpp.

Tparent [19/28]

typedef CReport_Base CReport::Tparent

private

Definition at line 69 of file Report.hpp.

Tparent [20/28]

typedef CSerialObject CReport_Base::Tparent

private

Definition at line 86 of file Report_.hpp.

Tparent [21/28]

typedef CResults_Base CResults::Tparent

private

Definition at line 69 of file Results.hpp.

Tparent [22/28]

typedef CSerialObject CResults_Base::Tparent

private

Definition at line 85 of file Results_.hpp.

Tparent [23/28]

template<bool LEGACY, unsigned long NHITS>

typedef CSearch_Base CSearch< LEGACY, NHITS >::Tparent

private

Definition at line 69 of file Search.hpp.

Tparent [24/28]

template<bool LEGACY, unsigned long NHITS, typename derived_t >

typedef CSerialObject CSearch_Base< LEGACY, NHITS, derived_t >::Tparent

private

Definition at line 87 of file Search_.hpp.

Tparent [25/28]

typedef CStatistics_Base CStatistics::Tparent

private

Definition at line 69 of file Statistics.hpp.

Tparent [26/28]

typedef CSerialObject CStatistics_Base::Tparent

private

Definition at line 76 of file Statistics_.hpp.

Tparent [27/28]

typedef CTarget_Base CTarget::Tparent

private

Definition at line 69 of file Target.hpp.

Tparent [28/28]

typedef CSerialObject CTarget_Base::Tparent

private

Definition at line 81 of file Target_.hpp.

TPattern

typedef string CParameters_Base::TPattern

Definition at line 99 of file Parameters_.hpp.

TPattern_from

typedef int CHsp_Base::TPattern_from

Definition at line 98 of file Hsp_.hpp.

TPattern_to

typedef int CHsp_Base::TPattern_to

Definition at line 99 of file Hsp_.hpp.

TPositive

typedef int CHsp_Base::TPositive

Definition at line 96 of file Hsp_.hpp.

TProgram

typedef string CReport_Base::TProgram

Definition at line 97 of file Report_.hpp.

TQseq

typedef string CHsp_Base::TQseq

Definition at line 110 of file Hsp_.hpp.

TQuery_frame

typedef int CHsp_Base::TQuery_frame

Definition at line 103 of file Hsp_.hpp.

TQuery_from

typedef int CHsp_Base::TQuery_from

Definition at line 100 of file Hsp_.hpp.

TQuery_gencode

typedef int CParameters_Base::TQuery_gencode

Definition at line 102 of file Parameters_.hpp.

TQuery_id

template<bool LEGACY, unsigned long NHITS, typename derived_t >

typedef string CSearch_Base< LEGACY, NHITS, derived_t >::TQuery_id

Definition at line 98 of file Search_.hpp.

TQuery_len

template<bool LEGACY, unsigned long NHITS, typename derived_t >

typedef int CSearch_Base< LEGACY, NHITS, derived_t >::TQuery_len

Definition at line 100 of file Search_.hpp.

TQuery_masking

template<bool LEGACY, unsigned long NHITS, typename derived_t >

typedef list< CRef< CRange > > CSearch_Base< LEGACY, NHITS, derived_t >::TQuery_masking

Definition at line 101 of file Search_.hpp.

TQuery_strand

typedef string CHsp_Base::TQuery_strand

Definition at line 102 of file Hsp_.hpp.

TQuery_title

template<bool LEGACY, unsigned long NHITS, typename derived_t >

typedef string CSearch_Base< LEGACY, NHITS, derived_t >::TQuery_title

Definition at line 99 of file Search_.hpp.

TQuery_to

typedef int CHsp_Base::TQuery_to

Definition at line 101 of file Hsp_.hpp.

TReference

typedef string CReport_Base::TReference

Definition at line 99 of file Report_.hpp.

TReport

typedef CReport CBlastOutput2_Base::TReport

Definition at line 92 of file BlastOutput2_.hpp.

TResults

typedef CResults CReport_Base::TResults

Definition at line 102 of file Report_.hpp.

TSc_match

typedef int CParameters_Base::TSc_match

Definition at line 94 of file Parameters_.hpp.

TSc_mismatch

typedef int CParameters_Base::TSc_mismatch

Definition at line 95 of file Parameters_.hpp.

TSciname

typedef string CHitDescr_Base::TSciname

Definition at line 96 of file HitDescr_.hpp.

TScore

typedef double CHsp_Base::TScore

Definition at line 93 of file Hsp_.hpp.

TSearch [1/2]

typedef CSearch CIteration_Base::TSearch

Definition at line 92 of file Iteration_.hpp.

TSearch [2/2]

typedef CSearch CResults_Base::TSearch

Definition at line 157 of file Results_.hpp.

TSearch_target

typedef CTarget CReport_Base::TSearch_target

Definition at line 100 of file Report_.hpp.

TStat

template<bool LEGACY, unsigned long NHITS, typename derived_t >

typedef CStatistics CSearch_Base< LEGACY, NHITS, derived_t >::TStat

Definition at line 103 of file Search_.hpp.

TSubjects

typedef list< string > CTarget_Base::TSubjects

Definition at line 152 of file Target_.hpp.

TTaxid

typedef NCBI_NS_NCBI::TTaxId CHitDescr_Base::TTaxid

Definition at line 95 of file HitDescr_.hpp.

TTitle

typedef string CHitDescr_Base::TTitle

Definition at line 94 of file HitDescr_.hpp.

TTo

typedef int CRange_Base::TTo

Definition at line 89 of file Range_.hpp.

TVersion

typedef string CReport_Base::TVersion

Definition at line 98 of file Report_.hpp.

Enumeration Type Documentation

E_Choice [1/2]

enum CResults_Base::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Iterations
e_Search	iterative search (psi and delta blast) db search
e_Bl2seq	bl2seq

Definition at line 97 of file Results_.hpp.

E_Choice [2/2]

enum CTarget_Base::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Db	BLAST Database name.
e_Subjects	Subject IDs.

Definition at line 93 of file Target_.hpp.

E_ChoiceStopper [1/2]

enum CResults_Base::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Bl2seq+1

Definition at line 104 of file Results_.hpp.

E_ChoiceStopper [2/2]

enum CTarget_Base::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Subjects+1

Definition at line 99 of file Target_.hpp.

E_memberIndex [1/11]

enum CBlastOutput2_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_report
e_error

Definition at line 96 of file BlastOutput2_.hpp.

E_memberIndex [2/11]

enum CErr_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_code
e_message

Definition at line 95 of file Err_.hpp.

E_memberIndex [3/11]

enum CHit_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_num
e_id
e_def
e_accession
e_len
e_hsps
e__allMandatory
e_num
e_description
e_len
e_hsps

Definition at line 102 of file Hit_.hpp.

E_memberIndex [4/11]

enum CHitDescr_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_id
e_accession
e_title
e_taxid
e_sciname

Definition at line 99 of file HitDescr_.hpp.

E_memberIndex [5/11]

enum CHsp_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_num
e_bit_score
e_score
e_evalue
e_query_from
e_query_to
e_hit_from
e_hit_to
e_pattern_from
e_pattern_to
e_query_frame
e_hit_frame
e_identity
e_positive
e_gaps
e_align_len
e_density
e_qseq
e_hseq
e_midline
e__allMandatory
e_num
e_bit_score
e_score
e_evalue
e_identity
e_positive
e_density
e_pattern_from
e_pattern_to
e_query_from
e_query_to
e_query_strand
e_query_frame
e_hit_from
e_hit_to
e_hit_strand
e_hit_frame
e_align_len
e_gaps
e_qseq
e_hseq
e_midline

Definition at line 115 of file Hsp_.hpp.

E_memberIndex [6/11]

enum CIteration_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_iter_num
e_query_ID
e_query_def
e_query_len
e_hits
e_stat
e_message
e__allMandatory
e_iter_num
e_search

Definition at line 95 of file Iteration_.hpp.

E_memberIndex [7/11]

enum CParameters_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_matrix
e_expect
e_include
e_sc_match
e_sc_mismatch
e_gap_open
e_gap_extend
e_filter
e_pattern
e_entrez_query
e__allMandatory
e_matrix
e_expect
e_include
e_sc_match
e_sc_mismatch
e_gap_open
e_gap_extend
e_filter
e_pattern
e_entrez_query
e_cbs
e_query_gencode
e_db_gencode
e_bl2seq_mode

Definition at line 107 of file Parameters_.hpp.

E_memberIndex [8/11]

enum CRange_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_from
e_to

Definition at line 92 of file Range_.hpp.

E_memberIndex [9/11]

enum CReport_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_program
e_version
e_reference
e_search_target
e_params
e_results

Definition at line 105 of file Report_.hpp.

E_memberIndex [10/11]

template<bool LEGACY, unsigned long NHITS, typename derived_t >

enum CSearch_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_query_id
e_query_title
e_query_len
e_query_masking
e_hits
e_stat
e_message

Definition at line 107 of file Search_.hpp.

E_memberIndex [11/11]

enum CStatistics_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_db_num
e_db_len
e_hsp_len
e_eff_space
e_kappa
e_lambda
e_entropy
e__allMandatory
e_db_num
e_db_len
e_hsp_len
e_eff_space
e_kappa
e_lambda
e_entropy

Definition at line 96 of file Statistics_.hpp.

Function Documentation

CanGet()

bool CBlastXML2_Base::CanGet ( void  ) const

inline

Check if it is safe to call Get method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 164 of file BlastXML2_.hpp.

CanGetAccession()

bool CHitDescr_Base::CanGetAccession ( void  ) const

inline

Check if it is safe to call GetAccession method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 387 of file HitDescr_.hpp.

References CHitDescr_Base::IsSetAccession().

Referenced by CHitDescr_Base::GetAccession().

CanGetAlign_len()

bool CHsp_Base::CanGetAlign_len

(

void

)

const

Check if it is safe to call GetAlign_len method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetBit_score()

bool CHsp_Base::CanGetBit_score

(

void

)

const

Check if it is safe to call GetBit_score method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetBl2seq_mode()

bool CParameters_Base::CanGetBl2seq_mode ( void  ) const

inline

Check if it is safe to call GetBl2seq_mode method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1321 of file Parameters_.hpp.

References CParameters_Base::IsSetBl2seq_mode().

Referenced by CParameters_Base::GetBl2seq_mode().

CanGetCbs()

bool CParameters_Base::CanGetCbs ( void  ) const

inline

Check if it is safe to call GetCbs method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1180 of file Parameters_.hpp.

References CParameters_Base::IsSetCbs().

Referenced by CParameters_Base::GetCbs().

CanGetCode()

bool CErr_Base::CanGetCode ( void  ) const

inline

Check if it is safe to call GetCode method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 211 of file Err_.hpp.

References CErr_Base::IsSetCode().

Referenced by CErr_Base::GetCode().

CanGetDb_gencode()

bool CParameters_Base::CanGetDb_gencode ( void  ) const

inline

Check if it is safe to call GetDb_gencode method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1274 of file Parameters_.hpp.

References CParameters_Base::IsSetDb_gencode().

Referenced by CParameters_Base::GetDb_gencode().

CanGetDb_len()

bool CStatistics_Base::CanGetDb_len

(

void

)

const

Check if it is safe to call GetDb_len method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetDb_num()

bool CStatistics_Base::CanGetDb_num

(

void

)

const

Check if it is safe to call GetDb_num method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetDensity()

bool CHsp_Base::CanGetDensity

(

void

)

const

Check if it is safe to call GetDensity method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetDescription()

bool CHit_Base::CanGetDescription ( void  ) const

inline

Check if it is safe to call GetDescription method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 334 of file Hit_.hpp.

CanGetEff_space()

bool CStatistics_Base::CanGetEff_space

(

void

)

const

Check if it is safe to call GetEff_space method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetEntrez_query()

bool CParameters_Base::CanGetEntrez_query

(

void

)

const

Check if it is safe to call GetEntrez_query method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetEntropy()

bool CStatistics_Base::CanGetEntropy

(

void

)

const

Check if it is safe to call GetEntropy method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetError()

bool CBlastOutput2_Base::CanGetError ( void  ) const

inline

Check if it is safe to call GetError method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 232 of file BlastOutput2_.hpp.

References CBlastOutput2_Base::IsSetError().

Referenced by CBlastOutput2_Base::GetError().

CanGetEvalue()

bool CHsp_Base::CanGetEvalue

(

void

)

const

Check if it is safe to call GetEvalue method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetExpect()

bool CParameters_Base::CanGetExpect

(

void

)

const

Check if it is safe to call GetExpect method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetFilter()

bool CParameters_Base::CanGetFilter

(

void

)

const

Check if it is safe to call GetFilter method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetFrom()

bool CRange_Base::CanGetFrom ( void  ) const

inline

Check if it is safe to call GetFrom method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 209 of file Range_.hpp.

References CRange_Base::IsSetFrom().

Referenced by CRange_Base::GetFrom().

CanGetGap_extend()

bool CParameters_Base::CanGetGap_extend

(

void

)

const

Check if it is safe to call GetGap_extend method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetGap_open()

bool CParameters_Base::CanGetGap_open

(

void

)

const

Check if it is safe to call GetGap_open method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetGaps()

bool CHsp_Base::CanGetGaps

(

void

)

const

Check if it is safe to call GetGaps method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetHit_frame()

bool CHsp_Base::CanGetHit_frame

(

void

)

const

Check if it is safe to call GetHit_frame method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetHit_from()

bool CHsp_Base::CanGetHit_from

(

void

)

const

Check if it is safe to call GetHit_from method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetHit_strand()

bool CHsp_Base::CanGetHit_strand ( void  ) const

inline

Check if it is safe to call GetHit_strand method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1742 of file Hsp_.hpp.

References CHsp_Base::IsSetHit_strand().

Referenced by CHsp_Base::GetHit_strand().

CanGetHit_to()

bool CHsp_Base::CanGetHit_to

(

void

)

const

Check if it is safe to call GetHit_to method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetHits()

template<bool LEGACY, unsigned long NHITS, typename derived_t >

bool CSearch_Base< LEGACY, NHITS, derived_t >::CanGetHits ( void  ) const

inline

Check if it is safe to call GetHits method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 581 of file Search_.hpp.

CanGetHseq()

bool CHsp_Base::CanGetHseq

(

void

)

const

Check if it is safe to call GetHseq method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetHsp_len()

bool CStatistics_Base::CanGetHsp_len

(

void

)

const

Check if it is safe to call GetHsp_len method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetHsps()

bool CHit_Base::CanGetHsps

(

void

)

const

Check if it is safe to call GetHsps method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetId()

bool CHitDescr_Base::CanGetId ( void  ) const

inline

Check if it is safe to call GetId method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 340 of file HitDescr_.hpp.

References CHitDescr_Base::IsSetId().

Referenced by CHitDescr_Base::GetId().

CanGetIdentity()

bool CHsp_Base::CanGetIdentity

(

void

)

const

Check if it is safe to call GetIdentity method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetInclude()

bool CParameters_Base::CanGetInclude

(

void

)

const

Check if it is safe to call GetInclude method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetIter_num()

bool CIteration_Base::CanGetIter_num

(

void

)

const

Check if it is safe to call GetIter_num method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetKappa()

bool CStatistics_Base::CanGetKappa

(

void

)

const

Check if it is safe to call GetKappa method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetLambda()

bool CStatistics_Base::CanGetLambda

(

void

)

const

Check if it is safe to call GetLambda method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetLen()

bool CHit_Base::CanGetLen

(

void

)

const

Check if it is safe to call GetLen method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetMatrix()

bool CParameters_Base::CanGetMatrix

(

void

)

const

Check if it is safe to call GetMatrix method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetMessage() [1/2]

bool CErr_Base::CanGetMessage ( void  ) const

inline

Check if it is safe to call GetMessage method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 258 of file Err_.hpp.

References CErr_Base::IsSetMessage().

Referenced by CErr_Base::GetMessage().

CanGetMessage() [2/2]

template<bool LEGACY, unsigned long NHITS, typename derived_t >

bool CSearch_Base< LEGACY, NHITS, derived_t >::CanGetMessage ( void  ) const

inline

Check if it is safe to call GetMessage method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 627 of file Search_.hpp.

References CSearch_Base< LEGACY, NHITS, derived_t >::IsSetMessage().

Referenced by CSearch_Base< LEGACY, NHITS, derived_t >::GetMessage().

CanGetMidline()

bool CHsp_Base::CanGetMidline

(

void

)

const

Check if it is safe to call GetMidline method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetNum() [1/2]

bool CHit_Base::CanGetNum

(

void

)

const

Check if it is safe to call GetNum method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetNum() [2/2]

bool CHsp_Base::CanGetNum

(

void

)

const

Check if it is safe to call GetNum method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetParams()

bool CReport_Base::CanGetParams ( void  ) const

inline

Check if it is safe to call GetParams method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 554 of file Report_.hpp.

CanGetPattern()

bool CParameters_Base::CanGetPattern

(

void

)

const

Check if it is safe to call GetPattern method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetPattern_from()

bool CHsp_Base::CanGetPattern_from

(

void

)

const

Check if it is safe to call GetPattern_from method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetPattern_to()

bool CHsp_Base::CanGetPattern_to

(

void

)

const

Check if it is safe to call GetPattern_to method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetPositive()

bool CHsp_Base::CanGetPositive

(

void

)

const

Check if it is safe to call GetPositive method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetProgram()

bool CReport_Base::CanGetProgram ( void  ) const

inline

Check if it is safe to call GetProgram method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 383 of file Report_.hpp.

References CReport_Base::IsSetProgram().

Referenced by CReport_Base::GetProgram().

CanGetQseq()

bool CHsp_Base::CanGetQseq

(

void

)

const

Check if it is safe to call GetQseq method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetQuery_frame()

bool CHsp_Base::CanGetQuery_frame

(

void

)

const

Check if it is safe to call GetQuery_frame method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetQuery_from()

bool CHsp_Base::CanGetQuery_from

(

void

)

const

Check if it is safe to call GetQuery_from method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetQuery_gencode()

bool CParameters_Base::CanGetQuery_gencode ( void  ) const

inline

Check if it is safe to call GetQuery_gencode method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1227 of file Parameters_.hpp.

References CParameters_Base::IsSetQuery_gencode().

Referenced by CParameters_Base::GetQuery_gencode().

CanGetQuery_id()

template<bool LEGACY, unsigned long NHITS, typename derived_t >

bool CSearch_Base< LEGACY, NHITS, derived_t >::CanGetQuery_id ( void  ) const

inline

Check if it is safe to call GetQuery_id method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 415 of file Search_.hpp.

References CSearch_Base< LEGACY, NHITS, derived_t >::IsSetQuery_id().

Referenced by CSearch_Base< LEGACY, NHITS, derived_t >::GetQuery_id().

CanGetQuery_len()

template<bool LEGACY, unsigned long NHITS, typename derived_t >

bool CSearch_Base< LEGACY, NHITS, derived_t >::CanGetQuery_len ( void  ) const

inline

Check if it is safe to call GetQuery_len method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 509 of file Search_.hpp.

References CSearch_Base< LEGACY, NHITS, derived_t >::IsSetQuery_len().

Referenced by CSearch_Base< LEGACY, NHITS, derived_t >::GetQuery_len().

CanGetQuery_masking()

template<bool LEGACY, unsigned long NHITS, typename derived_t >

bool CSearch_Base< LEGACY, NHITS, derived_t >::CanGetQuery_masking ( void  ) const

inline

Check if it is safe to call GetQuery_masking method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 556 of file Search_.hpp.

CanGetQuery_strand()

bool CHsp_Base::CanGetQuery_strand ( void  ) const

inline

Check if it is safe to call GetQuery_strand method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1554 of file Hsp_.hpp.

References CHsp_Base::IsSetQuery_strand().

Referenced by CHsp_Base::GetQuery_strand().

CanGetQuery_title()

template<bool LEGACY, unsigned long NHITS, typename derived_t >

bool CSearch_Base< LEGACY, NHITS, derived_t >::CanGetQuery_title ( void  ) const

inline

Check if it is safe to call GetQuery_title method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 462 of file Search_.hpp.

References CSearch_Base< LEGACY, NHITS, derived_t >::IsSetQuery_title().

Referenced by CSearch_Base< LEGACY, NHITS, derived_t >::GetQuery_title().

CanGetQuery_to()

bool CHsp_Base::CanGetQuery_to

(

void

)

const

Check if it is safe to call GetQuery_to method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetReference()

bool CReport_Base::CanGetReference ( void  ) const

inline

Check if it is safe to call GetReference method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 477 of file Report_.hpp.

References CReport_Base::IsSetReference().

Referenced by CReport_Base::GetReference().

CanGetReport()

bool CBlastOutput2_Base::CanGetReport ( void  ) const

inline

Check if it is safe to call GetReport method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 211 of file BlastOutput2_.hpp.

References CBlastOutput2_Base::IsSetReport().

Referenced by CBlastOutput2_Base::GetReport().

CanGetResults()

bool CReport_Base::CanGetResults ( void  ) const

inline

Check if it is safe to call GetResults method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 584 of file Report_.hpp.

CanGetSc_match()

bool CParameters_Base::CanGetSc_match

(

void

)

const

Check if it is safe to call GetSc_match method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetSc_mismatch()

bool CParameters_Base::CanGetSc_mismatch

(

void

)

const

Check if it is safe to call GetSc_mismatch method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetSciname()

bool CHitDescr_Base::CanGetSciname ( void  ) const

inline

Check if it is safe to call GetSciname method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 528 of file HitDescr_.hpp.

References CHitDescr_Base::IsSetSciname().

Referenced by CHitDescr_Base::GetSciname().

CanGetScore()

bool CHsp_Base::CanGetScore

(

void

)

const

Check if it is safe to call GetScore method.

Returns

• true, if the data member is getatable.
• false, otherwise.

CanGetSearch()

bool CIteration_Base::CanGetSearch ( void  ) const

inline

Check if it is safe to call GetSearch method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 258 of file Iteration_.hpp.

CanGetSearch_target()

bool CReport_Base::CanGetSearch_target ( void  ) const

inline

Check if it is safe to call GetSearch_target method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 524 of file Report_.hpp.

CanGetStat()

template<bool LEGACY, unsigned long NHITS, typename derived_t >

bool CSearch_Base< LEGACY, NHITS, derived_t >::CanGetStat ( void  ) const

inline

Check if it is safe to call GetStat method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 606 of file Search_.hpp.

References CSearch_Base< LEGACY, NHITS, derived_t >::IsSetStat().

Referenced by CSearch_Base< LEGACY, NHITS, derived_t >::GetStat().

CanGetTaxid()

bool CHitDescr_Base::CanGetTaxid ( void  ) const

inline

Check if it is safe to call GetTaxid method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 481 of file HitDescr_.hpp.

References CHitDescr_Base::IsSetTaxid().

Referenced by CHitDescr_Base::GetTaxid().

CanGetTitle()

bool CHitDescr_Base::CanGetTitle ( void  ) const

inline

Check if it is safe to call GetTitle method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 434 of file HitDescr_.hpp.

References CHitDescr_Base::IsSetTitle().

Referenced by CHitDescr_Base::GetTitle().

CanGetTo()

bool CRange_Base::CanGetTo ( void  ) const

inline

Check if it is safe to call GetTo method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 256 of file Range_.hpp.

References CRange_Base::IsSetTo().

Referenced by CRange_Base::GetTo().

CanGetVersion()

bool CReport_Base::CanGetVersion ( void  ) const

inline

Check if it is safe to call GetVersion method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 430 of file Report_.hpp.

References CReport_Base::IsSetVersion().

Referenced by CReport_Base::GetVersion().

CBlastOutput2() [1/2]

CBlastOutput2::CBlastOutput2 ( const CBlastOutput2 &  value )

private

CBlastOutput2() [2/2]

CBlastOutput2::CBlastOutput2 ( void  )

inline

Definition at line 88 of file BlastOutput2.hpp.

CBlastOutput2_Base() [1/2]

CBlastOutput2_Base::CBlastOutput2_Base ( const CBlastOutput2_Base &  )

private

CBlastOutput2_Base() [2/2]

END_CLASS_INFO CBlastOutput2_Base::CBlastOutput2_Base

(

void

)

Definition at line 106 of file BlastOutput2_.cpp.

References CBlastOutput2_Base::m_set_State.

CBlastXML2() [1/2]

CBlastXML2::CBlastXML2 ( const CBlastXML2 &  value )

private

CBlastXML2() [2/2]

CBlastXML2::CBlastXML2 ( void  )

inline

Definition at line 88 of file BlastXML2.hpp.

CBlastXML2_Base() [1/2]

CBlastXML2_Base::CBlastXML2_Base ( const CBlastXML2_Base &  )

private

CBlastXML2_Base() [2/2]

END_CLASS_INFO CBlastXML2_Base::CBlastXML2_Base

(

void

)

Definition at line 70 of file BlastXML2_.cpp.

References CBlastXML2_Base::m_set_State.

CErr() [1/2]

CErr::CErr ( const CErr &  value )

private

CErr() [2/2]

CErr::CErr ( void  )

inline

Definition at line 88 of file Err.hpp.

CErr_Base() [1/2]

CErr_Base::CErr_Base ( const CErr_Base &  )

private

CErr_Base() [2/2]

END_CLASS_INFO CErr_Base::CErr_Base

(

void

)

Definition at line 76 of file Err_.cpp.

References CErr_Base::m_set_State.

CheckSelected() [1/2]

void CResults_Base::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 266 of file Results_.hpp.

References CResults_Base::m_choice, and CResults_Base::ThrowInvalidSelection().

Referenced by CResults_Base::GetBl2seq(), CResults_Base::GetIterations(), and CResults_Base::GetSearch().

CheckSelected() [2/2]

void CTarget_Base::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 240 of file Target_.hpp.

References CTarget_Base::m_choice, and CTarget_Base::ThrowInvalidSelection().

Referenced by CTarget_Base::GetDb(), and CTarget_Base::GetSubjects().

CHit() [1/2]

CHit::CHit ( const CHit &  value )

private

CHit() [2/2]

CHit::CHit

(

void

)

CHit_Base() [1/2]

CHit_Base::CHit_Base ( const CHit_Base &  )

private

CHit_Base() [2/2]

CHit_Base::CHit_Base

(

void

)

CHitDescr() [1/2]

CHitDescr::CHitDescr ( const CHitDescr &  value )

private

CHitDescr() [2/2]

CHitDescr::CHitDescr ( void  )

inline

Definition at line 88 of file HitDescr.hpp.

CHitDescr_Base() [1/2]

CHitDescr_Base::CHitDescr_Base ( const CHitDescr_Base &  )

private

CHitDescr_Base() [2/2]

END_CLASS_INFO CHitDescr_Base::CHitDescr_Base

(

void

)

Definition at line 100 of file HitDescr_.cpp.

References CHitDescr_Base::m_set_State.

CHsp() [1/2]

CHsp::CHsp ( const CHsp &  value )

private

CHsp() [2/2]

CHsp::CHsp

(

void

)

CHsp_Base() [1/2]

CHsp_Base::CHsp_Base ( const CHsp_Base &  )

private

CHsp_Base() [2/2]

CHsp_Base::CHsp_Base

(

void

)

CIteration() [1/2]

CIteration::CIteration ( const CIteration &  value )

private

CIteration() [2/2]

CIteration::CIteration

(

void

)

CIteration_Base() [1/2]

CIteration_Base::CIteration_Base ( const CIteration_Base &  )

private

CIteration_Base() [2/2]

CIteration_Base::CIteration_Base

(

void

)

CParameters() [1/2]

CParameters::CParameters ( const CParameters &  value )

private

CParameters() [2/2]

CParameters::CParameters

(

void

)

CParameters_Base() [1/2]

CParameters_Base::CParameters_Base ( const CParameters_Base &  )

private

CParameters_Base() [2/2]

CParameters_Base::CParameters_Base

(

void

)

CRange() [1/2]

template<class Position >

CRange< Position >::CRange ( const CRange< Position > &  value )

private

CRange() [2/2]

template<class Position >

CRange< Position >::CRange ( void  )

inline

Definition at line 88 of file Range.hpp.

CRange_Base() [1/2]

CRange_Base::CRange_Base ( const CRange_Base &  )

private

CRange_Base() [2/2]

END_CLASS_INFO CRange_Base::CRange_Base

(

void

)

Definition at line 70 of file Range_.cpp.

References CRange_Base::m_set_State.

CReport() [1/2]

CReport::CReport ( const CReport &  value )

private

CReport() [2/2]

CReport::CReport ( void  )

inline

Definition at line 88 of file Report.hpp.

CReport_Base() [1/2]

CReport_Base::CReport_Base ( const CReport_Base &  )

private

CReport_Base() [2/2]

END_CLASS_INFO CReport_Base::CReport_Base

(

void

)

Definition at line 141 of file Report_.cpp.

References CObject::IsAllocatedInPool(), CReport_Base::m_set_State, CReport_Base::ResetParams(), CReport_Base::ResetResults(), and CReport_Base::ResetSearch_target().

CResults() [1/2]

CResults::CResults ( const CResults &  value )

private

CResults() [2/2]

CResults::CResults ( void  )

inline

Definition at line 88 of file Results.hpp.

CResults_Base() [1/2]

CResults_Base::CResults_Base ( const CResults_Base &  )

private

CResults_Base() [2/2]

END_CHOICE_INFO CResults_Base::CResults_Base

(

void

)

Definition at line 150 of file Results_.cpp.

CSearch() [1/2]

template<bool LEGACY, unsigned long NHITS>

CSearch< LEGACY, NHITS >::CSearch ( const CSearch< LEGACY, NHITS > &  value )

private

CSearch() [2/2]

template<bool LEGACY, unsigned long NHITS>

CSearch< LEGACY, NHITS >::CSearch ( void  )

inline

Definition at line 88 of file Search.hpp.

CSearch_Base() [1/2]

template<bool LEGACY, unsigned long NHITS, typename derived_t >

CSearch_Base< LEGACY, NHITS, derived_t >::CSearch_Base ( const CSearch_Base< LEGACY, NHITS, derived_t > &  )

private

CSearch_Base() [2/2]

template<bool LEGACY, unsigned long NHITS, typename derived_t >

END_CLASS_INFO CSearch_Base< LEGACY, NHITS, derived_t >::CSearch_Base

(

void

)

Definition at line 130 of file Search_.cpp.

References CSearch_Base< LEGACY, NHITS, derived_t >::m_set_State.

CStatistics() [1/2]

CStatistics::CStatistics ( const CStatistics &  value )

private

CStatistics() [2/2]

CStatistics::CStatistics

(

void

)

CStatistics_Base() [1/2]

CStatistics_Base::CStatistics_Base ( const CStatistics_Base &  )

private

CStatistics_Base() [2/2]

CStatistics_Base::CStatistics_Base

(

void

)

CTarget() [1/2]

CTarget::CTarget ( const CTarget &  value )

private

CTarget() [2/2]

CTarget::CTarget

(

void

)

CTarget_Base() [1/2]

CTarget_Base::CTarget_Base ( const CTarget_Base &  )

private

CTarget_Base() [2/2]

CTarget_Base::CTarget_Base

(

void

)

DECLARE_INTERNAL_TYPE_INFO() [1/14]

CBlastOutput2_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [2/14]

CBlastXML2_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [3/14]

CErr_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [4/14]

CHit_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [5/14]

CHitDescr_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [6/14]

CHsp_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [7/14]

CIteration_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [8/14]

CParameters_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [9/14]

CRange_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [10/14]

CReport_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [11/14]

CResults_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [12/14]

template<bool LEGACY, unsigned long NHITS, typename derived_t >

CSearch_Base< LEGACY, NHITS, derived_t >::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [13/14]

CStatistics_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [14/14]

CTarget_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DoSelect() [1/2]

void CResults_Base::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 78 of file Results_.cpp.

References CObject::AddReference(), CResults_Base::e_Bl2seq, CResults_Base::e_Iterations, CResults_Base::e_Search, CResults_Base::m_Bl2seq, CResults_Base::m_choice, CResults_Base::m_Iterations, and CResults_Base::m_object.

DoSelect() [2/2]

void CTarget_Base::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 73 of file Target_.cpp.

References CTarget_Base::e_Db, CTarget_Base::e_Subjects, CTarget_Base::m_choice, CTarget_Base::m_string, and CTarget_Base::m_Subjects.

Get()

const CBlastXML2_Base::Tdata & CBlastXML2_Base::Get ( void  ) const

inline

Get the member data.

Returns

Reference to the member data.

Definition at line 170 of file BlastXML2_.hpp.

References CBlastXML2_Base::m_data.

GetAccession()

const CHitDescr_Base::TAccession & CHitDescr_Base::GetAccession ( void  ) const

inline

Get the Accession member data.

Returns

Reference to the member data.

Definition at line 393 of file HitDescr_.hpp.

References CHitDescr_Base::CanGetAccession(), CHitDescr_Base::m_Accession, and CSerialObject::ThrowUnassigned().

GetAlign_len()

TAlign_len CHsp_Base::GetAlign_len

(

void

)

const

Get the Align_len member data.

Returns

Copy of the member data.

GetBit_score()

TBit_score CHsp_Base::GetBit_score

(

void

)

const

Get the Bit_score member data.

Returns

Copy of the member data.

GetBl2seq()

const CResults_Base::TBl2seq & CResults_Base::GetBl2seq ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 321 of file Results_.hpp.

References CResults_Base::CheckSelected(), CResults_Base::e_Bl2seq, and CResults_Base::m_Bl2seq.

GetBl2seq_mode()

const CParameters_Base::TBl2seq_mode & CParameters_Base::GetBl2seq_mode ( void  ) const

inline

Get the Bl2seq_mode member data.

Returns

Reference to the member data.

Definition at line 1327 of file Parameters_.hpp.

References CParameters_Base::CanGetBl2seq_mode(), CParameters_Base::m_Bl2seq_mode, and CSerialObject::ThrowUnassigned().

GetCbs()

CParameters_Base::TCbs CParameters_Base::GetCbs ( void  ) const

inline

Get the Cbs member data.

Returns

Copy of the member data.

Definition at line 1193 of file Parameters_.hpp.

References CParameters_Base::CanGetCbs(), CParameters_Base::m_Cbs, and CSerialObject::ThrowUnassigned().

GetCode()

CErr_Base::TCode CErr_Base::GetCode ( void  ) const

inline

Get the Code member data.

Returns

Copy of the member data.

Definition at line 224 of file Err_.hpp.

References CErr_Base::CanGetCode(), CErr_Base::m_Code, and CSerialObject::ThrowUnassigned().

GetDb()

const CTarget_Base::TDb & CTarget_Base::GetDb ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 269 of file Target_.hpp.

References CTarget_Base::CheckSelected(), CTarget_Base::e_Db, and CTarget_Base::m_string.

GetDb_gencode()

CParameters_Base::TDb_gencode CParameters_Base::GetDb_gencode ( void  ) const

inline

Get the Db_gencode member data.

Returns

Copy of the member data.

Definition at line 1287 of file Parameters_.hpp.

References CParameters_Base::CanGetDb_gencode(), CParameters_Base::m_Db_gencode, and CSerialObject::ThrowUnassigned().

GetDb_len()

TDb_len CStatistics_Base::GetDb_len

(

void

)

const

Get the Db_len member data.

Returns

Copy of the member data.

GetDb_num()

TDb_num CStatistics_Base::GetDb_num

(

void

)

const

Get the Db_num member data.

Returns

Copy of the member data.

GetDensity()

TDensity CHsp_Base::GetDensity

(

void

)

const

Get the Density member data.

Returns

Copy of the member data.

GetDescription()

const CHit_Base::TDescription & CHit_Base::GetDescription ( void  ) const

inline

Get the Description member data.

Returns

Reference to the member data.

Definition at line 340 of file Hit_.hpp.

References CHit_Base::m_Description.

GetEff_space()

TEff_space CStatistics_Base::GetEff_space

(

void

)

const

Get the Eff_space member data.

Returns

Copy of the member data.

GetEntrez_query()

const TEntrez_query& CParameters_Base::GetEntrez_query

(

void

)

const

Get the Entrez_query member data.

Returns

Reference to the member data.

GetEntropy()

TEntropy CStatistics_Base::GetEntropy

(

void

)

const

Get the Entropy member data.

Returns

Copy of the member data.

GetError()

const CBlastOutput2_Base::TError & CBlastOutput2_Base::GetError ( void  ) const

inline

Get the Error member data.

Returns

Reference to the member data.

Definition at line 238 of file BlastOutput2_.hpp.

References CBlastOutput2_Base::CanGetError(), CBlastOutput2_Base::m_Error, and CSerialObject::ThrowUnassigned().

GetEvalue()

TEvalue CHsp_Base::GetEvalue

(

void

)

const

Get the Evalue member data.

Returns

Copy of the member data.

GetExpect()

TExpect CParameters_Base::GetExpect

(

void

)

const

Get the Expect member data.

Returns

Copy of the member data.

GetFilter()

const TFilter& CParameters_Base::GetFilter

(

void

)

const

Get the Filter member data.

Returns

Reference to the member data.

GetFrom()

CRange_Base::TFrom CRange_Base::GetFrom ( void  ) const

inline

Get the From member data.

Returns

Copy of the member data.

Definition at line 222 of file Range_.hpp.

References CRange_Base::CanGetFrom(), CRange_Base::m_From, and CSerialObject::ThrowUnassigned().

Referenced by SGraphMaker::AddActualGap(), CAlignCollapser::AddAlignment(), CMultAlign::AddAlignment(), CAlignmentSmear::AddAlignment(), CChain::AddAllMembersAndCoverage(), CGeneModel::AddExon(), CModelExon::AddFrom(), CGeneModel::AddGgapExon(), CGeneModel::AddNormalExon(), CGBProjectHelper::AddProjectItemsFromRID(), CGraphRanges::AddRange(), CDepthCollection::AddRange(), CDensityMap< CntType >::AddRange(), CSAM_CIGAR_Formatter::AddRow(), CFeatureGenerator::SImplementation::AdjustAlignment(), AdjustCdregionFrame(), CAdjustForConsensusSpliceSite::AdjustCDS(), CEditSequence::AdjustFeatureLocations(), CEditSeqEndsWithAlign::AdjustLoc(), CAlignmentAssistant::AdjustLoc(), CEditSequence::AdjustProtFeatureLocations(), AlignModelToSeqalign(), AlnFromRangeAscendingSort(), CAlnGraphic::AlnGraphicDisplay(), CFeatTrim::Apply(), CFuseJoinsInLocs::apply(), CGroupExplode::apply(), CExplodeRNAFeats::apply(), CModelCompare::AreSimilar(), CDiscrepancyVisitorImpl< _Name >::Autofix(), BadSeqLocSortOrder(), SAnnotObject_Key::begin(), BOOST_AUTO_TEST_CASE(), CRawSeqToDeltaSeqByLoc::ByAssemblyGapFeatures_impl(), CEquivRangeBuilder::CalcMatches(), CEquivRange::CalcRelative(), CEquivRange::CalcRelativeDuo(), CChain::CalculateDropLimits(), CChainer::CChainerImpl::CalculateSpliceWeights(), CChain::CalculateSupportAndWeightFromMembers(), CAlignMap::CAlignMap(), CAlnGraphic::CAlnGraphic(), CChainer::CChainerImpl::CanIncludeJinI(), CAnnotObject_Ref::CAnnotObject_Ref(), CChain::CChain(), CGeneModel::CdsInvariant(), CdsTrnaOverlapStr(), CFeatHistogramDS::CFeatHistogramDS(), CSeqMapSwitchPoint::ChangeSwitchPoint(), CheckAdjustStartAndStop(), CChainer::CChainerImpl::CheckCompatibility(), CChain::CheckSecondaryCapPolyAEnds(), CheckSparseAln(), CMultAlign::CheckWord(), CIdRangeMap::CIdRangeMap(), CAlignCollapser::CleanSelfTranscript(), CCDSInfo::Clip(), CGeneModel::Clip(), CChain::ClipChain(), CAlignCollapser::ClipESTorSR(), CChain::ClipLowCoverageUTR(), CAlignCollapser::ClipNotSupportedFlanks(), CChain::ClipToCap(), CChain::ClipToPolyA(), IAlnMultiDataSource::CollectAlignStats(), CollectAttributes(), CChainer::CChainerImpl::CombineCompatibleChains(), CombineCorrectionsAndIndels(), CCDSInfo::CombineWith(), CSeq_loc_Conversion::CombineWith(), SPhyloCSFSlice::CompactRange(), CMultiAlignerTest::CompareDomainHits(), CAnnotCompare::CompareFeats(), Convert_Seq_feat_Seq_loc_Gen_Loc_TotalRange(), ConvertSeqLocsToPairwiseAln(), CSeq_loc_Conversion::ConvertSimpleLoc(), ConvertStdsegToPairwiseAln(), CProteinAlignText::CProteinAlignText(), CAnnotationASN1::CImplementationData::create_cdregion_feature(), CAnnotationASN1::CImplementationData::create_internal_feature(), CAnnotationASN1::CImplementationData::create_packed_int_seqloc(), CChainer::CChainerImpl::CreateChainsForPartialProteins(), CSegmentGlyph::CSegmentGlyph(), CSeq_loc_Conversion::CSeq_loc_Conversion(), CShowBlastDefline::CShowBlastDefline(), CCDSInfo::Cut(), CGeneModel::CutExons(), CAlignModel::CutExons(), CEquivRange::Distance(), CIntervalTree::DoDelete(), Does5primerAbutGap(), CIntervalTree::DoInsert(), CAlignGlyph::DrawPWAlignElem(), CRenderingContext::DrawStrandIndicators(), DumpSparseAln(), CChainer::CChainerImpl::Duplicate5pendsAndShortCDSes(), CMultAlign::EmitSequenceFromBase(), CMultAlign::EmitSequenceFromRead(), NSnpAnnot::EstimateSNPCount(), CMacroEngineParallel::Exec(), CPrefetchSeqData::Execute(), ExonNumsForInterval(), CLocationEditPolicy::Extend5(), CGnomonAnnotator::ExtendJustThisChain(), CBlastDBExtractor::ExtractFasta(), CEquivRangeBuilder::ExtractRangesFromSeqAlign(), CAlignCollapser::FillGapsInAlignmentAndAddToGenomicGaps(), CAlignCollapser::FilterAlignments(), FindAllCodonInstances(), CChainer::CChainerImpl::FindContainedAlignments(), CProSplign::FindGlobalAlignment(), FindNewLocations(), CSplitCDSwithTooManyXs::FindNewLocations(), CChainer::CChainerImpl::FindOptimalChainForProtein(), FindPolyA(), FindPolyTail(), CChainer::FindSelenoproteinsClipProteinsToStartStop(), FindStartsStops(), CVecscreen::FromRangeAscendingSort(), FromRangeAscendingSort(), CAlnGraphic::FromRangeAscendingSort(), CChainer::CChainerImpl::FsTouch(), CScore_StartStopCodon::Get(), CAlignCommon::GetAlignment(), CDensegGraphicDataSource::GetAlnPosFromSeqPos(), SChunkTranslator::GetAlnPosFromSeqPos(), CSparseAlignment::GetAlnSeqString(), CDensegGraphicDataSource::GetAlnSeqString(), CSparseAln::GetAlnSeqString(), CSparseMultiDataSource::GetAlnStart(), CSparseAlnGraphicDataSource::GetAlnStart(), CGnomonEngine::GetAnnot(), CScoreBuilder::GetBlastScoreProtToNucl(), CFeatureGenerator::SImplementation::GetCds(), CGeneModel::GetCdsDnaSequence(), CSeqUtils::GetCdsMappingInfoFromRna(), IAlnGraphicDataSource::GetCigarAtAlnPos(), CAlignCollapser::GetCollapsedAlgnments(), CExonFromCds::GetCommand(), CMultAlign::GetCounts(), CSeq_loc_Conversion::GetDstInterval(), CSeq_loc_Conversion::GetDstPoint(), CAlignmentAssistant::GetFeatures(), CEditSequence::GetFeatures(), CSeqTextDataSourceInterval::GetFeaturesAtPosition(), CModelExon::GetFrom(), CAnnotMapping_Info::GetFrom(), CParse::GetGenes(), CAlignFormatUtil::GetGraphiscLink(), CSeqMapSwitchPoint::GetInsert(), CGuiObjectInfoSeq_align::GetInsertionRanges(), CSeqTextDataSource::GetIntervalBreaks(), CHandleRange::GetLeft(), CSeqUtils::GetLocPlacements(), CAlignFormatUtil::GetMasterCoverage(), CGeneModel::GetProtein(), CEditSequence::GetProteinFeatures(), GetProteinWeight(), CDenseSegHitElement::GetQueryStart(), CStdSegHitElement::GetQueryStart(), CHit::GetRangeFromSeq1(), CHit::GetRangeFromSeq2(), CMaskedRangeSet::GetRanges(), CAlnMap::GetResidueIndexMap(), CCodingPropensity::GetScore(), CGnomonEngine::GetScore(), CEditScript::GetScore(), CMatchesListCtrl::GetSelectedLocations(), CSeqTextDataSourceInterval::GetSeqData(), CDensegGraphicDataSource::GetSeqPosFromAlnPos(), SChunkTranslator::GetSeqPosFromAlnPos(), CSeq_align::GetSeqStart(), CSpliced_seg::GetSeqStart(), CGuiObjectInfoSeq_align::GetSeqString(), CAlnVec::GetSeqString(), IAlnGraphicDataSource::GetSeqString(), CDensegGraphicDataSource::GetSeqString(), CSparseAlignment::GetSeqString(), CSparseAln::GetSeqString(), CSegmentGlyph::GetSignature(), CSNPDbSeqIterator::GetSNPCount(), GetSortedCuts(), CDensityMap< score_type >::GetStart(), CDenseSegHitElement::GetSubjectStart(), CStdSegHitElement::GetSubjectStart(), CAlignFormatUtil::GetUniqSeqCoverage(), CRenderingContext::GetVisibleFrom(), CRenderingContext::GetVisSeqFrom(), CGeneModel::HasCompatibleOverlap(), CCrossPanelIR::HitTest(), Include(), CChainer::CChainerImpl::IncludeInContained(), CSparseAlignment::Init(), CSeqScores::Init(), CAlnGraphic::Init(), CAlignCollapser::InitContig(), CIntervalTree::Insert(), CSegmentedRangeCollection::insert(), CCddInputData::CHit::IntersectWith(), CIntervalTree::IntervalsOverlapping(), CLocationEditPolicy::Is3AtEndOfSeq(), CLocationEditPolicy::Is5AtEndOfSeq(), CGeneModel::isCompatible(), IsExtendable(), CAlnMap::CAlnChunk::IsGap(), CRenderingContext::IsInVisibleRange(), CGeneModel::isNMD(), C2DLayoutEngine::Layout(), CChainer::CChainerImpl::LeftRight(), CSeqTextDataSourceInterval::LookForSpliceJunctions(), CChainer::CChainerImpl::LRCanChainItoJ(), CChainer::CChainerImpl::LRIinit(), CChain::MainPeaks(), CChainer::CChainerImpl::MakeChains(), CEditScript::MakeEditScript(), CScoreUniqSeqCoverage::MakeScore(), Map(), CGnomonAnnotator_Base::MapOneModelToEditedContig(), CGnomonAnnotator_Base::MapOneModelToOrigContig(), CAlignMap::MapRangeEditedToOrig(), CAlignMap::MapRangeOrigToEdited(), SChainMember::MarkIncluded(), SChainMember::MarkPostponed(), SChainMember::MarkUnwantedCopiesForChain(), CHitList::MatchOverlappingSubHits(), CGeneModel::MutualExtension(), CSeqGraphicPane::NextPrevSplice(), CSeqGraphicPane::OnSearchTip(), CGeneModel::OpenLeftEnd(), CPairwise_CI::operator bool(), AlignSeqOrder::operator()(), AlignsLeftEndFirst::operator()(), SGlyphRangeSorter::operator()(), SSortSourceByLoc::operator()(), GenomeOrderD::operator()(), LeftOrder::operator()(), LeftOrderD::operator()(), RightOrder::operator()(), RightOrderD::operator()(), CRangeCmp::operator()(), SRangeStartSort::operator()(), CRangeWithFuzz::operator+=(), SFShiftsCluster::operator<(), operator<<(), ParseAttributes(), PatchTargetSequence(), CChain::PeaksAndLimits(), CAlignModel::PolyALen(), CAlnVecPrinter::PopsetStyle(), CGnomonAnnotator::Predict(), CRenderingContext::PrepareContext(), CMultAlign::PrepareReads(), CTabularFormatter_MismatchPositions::Print(), CTabularFormatter_ExonIntrons::Print(), CTabularFormatter_NearestGap::Print(), CTabularFormatter_StartCodonChanges::Print(), CAlnBuildApp::PrintAnchoredAln(), printGFF3(), PrintSAM(), CResolveRequest::Process(), readGFF3(), CDense_seg::RemapToLoc(), CAlignCollapser::RemoveNotSupportedIntronsFromProt(), CAlignCollapser::RemoveNotSupportedIntronsFromTranscript(), CAlignMarkHandler::Render(), CRuler::Render(), CLinearSelHandler::Render(), CChainer::CChainerImpl::ReplicatePStops(), CGnomonEngine::ResetRange(), CHit::ResolveSubHitConflicts(), RestoreModelReadingFrame(), CChain::RestoreReasonableConfirmedStart(), RetrievePartsOfLargeChromosome(), CChainer::CChainerImpl::RightLeft(), CAgpExportJob::Run(), CTestBMApp::Run(), CAlnTestApp::Run(), CDensityMap< score_type >::RunLenIterator(), CAdvancedAlignCleanup::RunSplignOnCompartment(), s_AdjustInternalCutLocations(), s_AlignDist(), s_BasicValidation(), s_CheckAbutting(), s_CheckMixLoc(), s_CollectBestOverlaps(), s_Contains(), s_DoNWalign(), s_FixMinusStrandRange(), s_GetCigarString(), s_GetCountIdentityMismatch(), s_GetLinkoutUrl(), s_GetTrimCoordinates(), s_GetUncoveredLength(), variation::CVariationUtil::CVariantPropertiesIndex::s_GetUTRLocs(), s_IntervalsMatchGaps(), s_IsLocationEndAtOtherLocationInternalEndpoint(), s_LocationsTouch(), s_MapSlaveFeatureToMaster(), s_MergeCuts(), CSequenceUpdater::s_OffsetLocation(), s_PartialAtGapOrNs(), s_PrintLocAsJavascriptArray(), s_ProcessAlignSet(), s_Seq_align_Seq_loc(), s_SeqLocToRangeInfoMap(), s_SeqLocToRangeInfoMapByStrand(), s_SeqLocToTotalRangeInfoMap(), s_SeqLocToTotalRangesInfoMapByStrand(), s_SetRangesForMixedAlignments(), s_Test_CheckIntervals(), s_TestForOverlapEx(), s_UpdateSeqGraphLoc(), SAlignExtended::SAlignExtended(), CViewGraphic::SaveSettingsAtProject(), CHangScorer::ScoreAlignments(), CClippedScorer::ScoreAlignments(), CGnomonEngine::SelectBestReadingFrame(), CMultAlign::SeqCountsBetweenTwoStrongWords(), CAutoDefExonListClause::SeqLocIntersect(), CFeatureSearchJob::SeqLocToString(), CCDSInfo::Set5PrimeCdsLimit(), CHistogramGlyph::SetAxisRange(), CReportEntry::SetCds(), CChain::SetConfirmedEnds(), CChain::SetConfirmedStartStopForCompleteProteins(), CChainer::CChainerImpl::SetConfirmedStartStopForProteinAlignments(), CChain::SetConsistentCoverage(), CChainer::CChainerImpl::SetFlagsForChains(), CBlastDBExtractor::SetSeqId(), CCDSInfo::SetStop(), CAlignMap::ShrinkToRealPoints(), CAlignMap::ShrinkToRealPointsOnEdited(), CAlignCompare::SAlignment::Slice(), CEquivRangeBuilder::SliceOnQuery(), CEquivRangeBuilder::SliceOnSubjt(), SortHspByMasterStartAscending(), spliced_exon(), CEquivRangeBuilder::SplitIntersections(), CBlobSplitterImpl::SplitPieces(), CSeqTextPane::STG_SetSubtypesForFeature(), CCDSInfo::Strand(), StrictlyContainedInDels(), CCddInputData::CHit::Subtract(), CLocMapper_Default::CGappedRange::ToString(), CGeneModel::TranscriptLimits(), CLiteAlign::TranscriptSeq(), MarkupCappedEst::transform_align(), CutShortPartialExons::transform_align(), ProjectCDS::transform_align(), TrimAlignment::transform_align(), RemoveTrailingNs::transform_model(), CChainer::CChainerImpl::TrimAlignmentsIncludedInDifferentGenes(), CGeneModel::TrimEdgesToFrameInOtherAlignGaps(), CFeatureGenerator::SImplementation::TrimHolesToCodons(), CSplignTrim::TrimHolesToCodons(), TrimAlignment::TrimProtein(), CAlignmentAssistant::TrimQualityScores(), TrimSeqAlign(), TrimAlignment::TrimTranscript(), CLocationsListCtrl::UpdateData(), CAnnotMapping_Info::UpdateMappedSeq_loc(), CSpliced_seg::Validate(), CValidError_graph::ValidateGraphsOnBioseq(), CSpliceProblems::ValidateSpliceCdregion(), CSpliceProblems::ValidateSpliceMrna(), CMultAlign::Variations(), VariBandAlign(), CAlnVwrApp::View9(), x_AddConstraint(), CSGAnnotJob::x_AddGraphObject(), CSGAnnotJob::x_AddGraphToMap(), CGuiObjectInfoSeq_feat::x_AddGroupLocationRows(), CGuiObjectInfoSeq_feat::x_AddLocationRows(), CPhrap_Read::x_AddQualityFeat(), CFeatureItem::x_AddQualsProt(), CSequenceSearchJob::x_AddToResults(), CVectorTrimPanel::x_AdjustDensegAlignment(), CFeatGlyph::x_AdjustFrame(), CVectorTrimPanel::x_AdjustInternalCutLocations(), CAlignMarkHandler::x_AlnRangeFromSeqRange(), CAdjustForConsensusSpliceSite::x_AlsoAdjustmRNA(), COligoSpecificityCheck::x_AnalyzeLeftAndRightPrimer(), COligoSpecificityCheck::x_AnalyzeOnePrimer(), COligoSpecificityCheck::x_AnalyzePrimerSpecificity(), CMultiAligner::x_AssignRPSResFreqs(), CDensityMap< score_type >::x_BinN(), CVecscreen::x_BuildNonOverlappingRange(), CAlignGlyph::x_CalcIntervals(), CDensityMap< score_type >::x_CalcNbins(), CVisibleRange::x_Clamp(), CAdvancedAlignCleanup::x_CleanupProsplignAsGenomic(), CSGAlignStatJob::x_CollectAlignStats(), x_CollectCoverageGraph(), CFeatureGenerator::SImplementation::x_CollectMrnaSequence(), CRangeSet< CPairwiseAln::TPos >::x_CombineWithAndKeepAbutting(), CMultiAligner::x_ComputeProfileRangeAlignment(), CAlignGlyph::x_ConvertAlnTaillRngToSeqRng(), CAlnSpanVertModel::x_ConvertRowsToSpans(), CSeq_align_Mapper_Base::x_ConvertSegment(), CSeq_align_Mapper::x_ConvertSegmentCvt(), CSGAlignmentJob::x_CreateAlignGlyphsForCrossOriginAlign(), CFeatureGenerator::SImplementation::x_CreateCdsFeature(), CSGFeatureJob::x_CreateCrossOriginGlyphs(), CSGAlignmentJob::x_CreateFeatGlyph(), CSGFeatureJob::x_CreateFeatHist(), CMacroBioData::x_CreateFeatIterator(), CSGFeatureJob::x_CreateFeatSmear(), CSGAnnotJob::x_CreateHistFromGraph(), CSGAlignStatJob::x_CreatePileUpGraphs(), CAlnGraphic::x_DisplayMaster(), CCpgSearchJob::x_DoSearch(), CMergeTree::x_Dot_Nodes(), CAlignSmearGlyph::x_Draw(), CClonePlacementGlyph::x_Draw(), CCommentGlyph::x_Draw(), CGeneGroup::x_Draw(), CLinkedFeatsGroup::x_Draw(), CMatePairGlyph::x_Draw(), CSegmentGlyph::x_Draw(), CFeatGlyph::x_DrawAdditionalInfo(), CVcfGlyph::x_DrawAdditionalInfo(), CAlignGlyph::x_DrawAlignRowSequence(), CLayoutGroup::x_DrawBoundary(), CLinkedFeatsGroup::x_DrawChildrenOnParent(), CCrossPanelIR::x_DrawCrossAlignment(), CSeqGlyph::x_DrawException(), CFeatGlyph::x_DrawFeatureBar(), CLinkedFeatsGroup::x_DrawFeatureBar(), CFeatGlyph::x_DrawFeatureBar_sv(), CAlignGlyph::x_DrawGaps(), CSeqGlyph::x_DrawInnerLabelColumns(), CSeqGlyph::x_DrawInnerLabels(), CFeatGlyph::x_DrawInnerLabels(), CVcfGlyph::x_DrawInnerLabels(), CAlignGlyph::x_DrawInserts(), CAlignGlyph::x_DrawInternalUnalignedRegions(), CLDBlockLine::x_DrawLabel(), CLinkedFeatsGroup::x_DrawLabels(), CFeatGlyph::x_DrawLabelWithXPinned(), CVcfGlyph::x_DrawLabelWithXPinned(), CFeatGlyph::x_DrawLabelWithYPinned(), CVcfGlyph::x_DrawLabelWithYPinned(), CAlignGlyph::x_DrawMultiAlign(), CAlignGlyph::x_DrawMultiAlignLabel(), CCdsGlyph::x_DrawProtSeqWithMapping(), CAlignGlyph::x_DrawPWAlign(), CFeatGlyph::x_DrawRNAProductSequence(), CFeatGlyph::x_DrawRuler(), CCrossPanelIR::x_DrawSequence(), CAlignGlyph::x_DrawTailGlyphs(), CAlignGlyph::x_DrawUnalignedBar(), CAlignGlyph::x_DrawUnalignedRowSequence(), CVcfGlyph::x_DrawVariationBar(), SGraphMaker::x_EndGraph(), CMergeTree::x_EvalGap(), CSnpJob::x_Execute(), CSGAlignStatJob::x_Execute(), CSGSeqGraphJob::x_Execute(), CBinsJob::x_Execute(), CEpigenomicsJob::x_Execute(), CSGFeatureJob::x_Execute(), CGeneModelFeatJob::x_Execute(), CSGCalcFeatHistJob::x_Execute(), CSGSegmentMapJob::x_Execute(), CSFTranslationJob::x_Execute(), CVcfFeatureJob::x_Execute(), CBlastFastaInputSource::x_FastaToSeqLoc(), CBinsJob::x_FetchGraphs(), CSnpJob::x_FetchGraphs(), COligoSpecificityCheck::x_FillGlobalAlignInfo(), CMultiAligner::x_FindConservedColumns(), CMultiAligner::x_FindConsistentHitSubset(), CMultiAligner::x_FindConstraints(), CMultiAligner::x_FindDomainHits(), CMultiAligner::x_FindInClusterConstraints(), CMultiAligner::x_FindLocalHits(), CMultiAligner::x_FindLocalInClusterHits(), COligoSpecificityCheck::x_FindOverlappingHSP(), CMultiAligner::x_FindPatternHits(), CMultiAligner::x_FindRPSHits(), CAlnVecRow::x_ForEachAlnSeg(), CCIGAR_Formatter::x_FormatLine(), CAlnGraphic::x_FormatScale(), CSGAlignmentJob::x_GetAlignments(), CAlnVecRow::x_GetAlignmentTooltip_Helper(), CAlnVecRow::x_GetAlignmentTooltip_Insert(), CGuiObjectInfoSeq_align::x_GetAlignmentTooltip_Insert(), CSGAlignmentJob::x_GetAlignSmear(), CDensegGraphicDataSource::x_GetAlnStringFromCigar(), CSixFramesTransTrack::x_GetCurrentTransRange(), CAnnotObject_Less::x_GetExtremes(), CObjectIndex::x_GetFeatureCode(), CDisplaySeqalign::x_GetFeatureInfo(), CVecscreen::x_GetMatchType(), CGuiObjectInfoSeq_feat::x_GetProductSequence(), x_GetProfileMatchRanges(), CMultiAlignView::x_GetRowSeqLoc(), COligoSpecificityCheck::x_GetSlaveRangeGivenMasterRange(), CGuiObjectInfoSeq_feat::x_GetSplicedSeqTitle(), CFeatTrim::x_GetStartOffset(), CMacroEngineParallel::x_GetThreadCount(), CAlnVecRow::x_GetTooltipSequence(), CVectorTrimPanel::x_GetTrimCoordinates(), CCreateGeneModelTask::x_Group_By_GeneID(), CCleanup::x_HasShortIntron(), CAlignMarkHandler::x_HitTest(), CPairwise_CI::x_Init(), CSeq_align_Mapper_Base::x_Init(), CSeq_loc_Mapper_Base::x_InitAlign(), CAlignMarkHandler::x_InitDeltaMap(), CSeq_loc_Mapper::x_InitGCSequence(), CSeq_loc_Mapper_Base::x_InitializeLocs(), CDenseg_CI::x_InitIterator(), CBlastHitMatrix::x_InitPort(), CDenseg_CI::x_InitSegment(), CPairwise_CI::x_InitSegment(), CSparse_CI::x_InitSegment(), CSeqGlyph::x_IntersectVisible(), CAdjustForConsensusSpliceSite::x_IntronLength(), CVectorTrimPanel::x_IsCompleteCut(), CValidError_bioseq::x_IsPartialAtSpliceSiteOrGap(), CHapmapJob::x_Load(), CLDBlockJob::x_Load(), CSGAlignmentJob::x_LoadAlignmentFeats(), CSGAlignmentJob::x_LoadAlignments(), CBatchFeatJob::x_LoadFeatProducts(), CSGSegmentSmearJob::x_LoadFromDeltaSeqs(), CSGSegmentSmearJob::x_LoadFromNA(), CSGSegmentSmearJob::x_LoadFromNetCache(), CLDBlockJob::x_LoadFtable(), CSGSegmentSmearJob::x_LoadGaps(), CSGSeqGraphJob::x_LoadSeqTable(), CGraphOverlay::x_LoadSettings(), CGraphTrack::x_LoadSettings(), CSnpJob::x_MakeHistogramFromFtable(), CMappingRange::x_Map_Fuzz(), CSeq_loc_Mapper_Base::x_MapInterval(), CSeq_loc_Mapper_Base::x_MapNextRange(), CVectorTrimPanel::x_MergeCuts(), CAlnGraphic::x_MergeDifferentSeq(), CVecscreen::x_MergeInclusiveSeqalign(), COligoSpecificityCheck::x_NW_alignment(), CLinearSelHandler::x_OnChangeSelRange(), CTextSelHandler::x_OnChangeSelRange(), CGraphOverlay::x_OnLayoutChanged(), CDisplaySeqalign::x_OutputSeq(), CAlnSpanVertModel::x_PopulateRows(), CBinsJob::x_PreFetchFtable(), CAnnotObject_Info::x_ProcessAlign(), CSGFeatureJob::x_ProcessCachedBigBed(), CSGFeatureJob::x_ProcessCachedVcfTabix(), CGeneModelFeatJob::x_ProcessLandMarkFeatures(), CSeq_loc_Mapper_Base::x_PushMappedRange(), CMultiAligner::x_RealignBlocks(), CAlnVecRow::x_RenderAlignSegments(), CRuler::x_RenderAllPosLabels(), CAlnVecRow::x_RenderAveragableScores(), CAlignGlyph::x_RenderAveragableScores(), CRuler::x_RenderBackground(), CSeqTextPane::x_RenderCodons(), CTraceGraph::x_RenderConfGraph(), CSequenceTrack::x_RenderContent(), CTraceGraph::x_RenderContour(), CTraceGraph::x_RenderCurveSegment(), CFeaturePanel::x_RenderFeatureGrid(), CFeaturePanel::x_RenderHairLineSelections(), CTraceGraph::x_RenderIntensityGraphs(), CAlignGlyph::x_RenderNonAveragableScores(), CRuler::x_RenderOriginAndMetric(), CRuler::x_RenderScale(), CAlnVecRow::x_RenderSequence(), CSeqGraphicPane::x_RenderTooltipConnector(), CAlnVecRow::x_RenderUnaligned(), CInversionMergeAligner::x_RunMerger(), COligoSpecificityCheck::x_SavePrimerInfo(), COligoSpecificityCheck::x_SequencesMappedToSameTarget(), CMultiAligner::x_SetDomainHits(), CHitMatrixWidget::x_SetPortLimits(), CReportEntry::x_SetRnaCds(), CCrossAlnRenderer::x_SetupModelLimits(), CSeqGraphicRenderer::x_SetupModelLimits(), CAdjustForConsensusSpliceSite::x_ShiftExonPairBackward(), CAdjustForConsensusSpliceSite::x_ShiftExonPairForward(), CUnorderedSplitter::x_SplitDeltaExt(), CUnorderedSplitter::x_SplitSeqData(), CUnorderedSplitter::x_StripDistantAlignments(), CVectorTrimPanel::x_TrimFeatureLocations(), CUnorderedSplitter::x_TrimRows(), CFeatTrim::x_TrimTrnaExt(), CClonePlacementGlyph::x_UpdateBoundingBox(), CFeatGlyph::x_UpdateBoundingBox(), CLayoutTrack::x_UpdateBoundingBox(), CNamedGroup::x_UpdateBoundingBox(), CTraceGlyph::x_UpdateBoundingBox(), CVcfGlyph::x_UpdateBoundingBox(), CAdjustForConsensusSpliceSite::x_UpdateExonFeatures(), CGraphOverlay::x_UpdateLegend(), CHistogramGlyph::x_UpdateLegend(), CAlignMarkHandler::x_UpdateMarks(), x_UpdateRanges(), CVectorTrimPanel::x_UpdateSeqGraphLoc(), CSeq_annot_SortedIter::x_Valid(), CRNAValidator::x_ValidateAnticodon(), CValidError_graph::x_ValidateGraphOnDeltaBioseq(), CPsiBl2SeqTestFixture::x_ValidatePssmVsGi129295(), CPsiBl2SeqTestFixture::x_ValidatePssmVsGi7450545(), CSplitQueryTestFixture::x_ValidateQuerySeqLocsPerChunk(), CValidError_align::x_ValidateSeqLength(), CMultiAligner::x_ValidateUserHits(), CHitMatrixWidget::x_ZoomToHits(), CGff2Writer::xAssignFeatureAttributePartial(), CGff3Writer::xAssignSourceEndpoints(), CGffIdGenerator::xExtractFeatureLocation(), CGff3Writer::xWriteSequenceHeader(), and CAlnMultiWidget::ZoomToSelection().

GetGap_extend()

TGap_extend CParameters_Base::GetGap_extend

(

void

)

const

Get the Gap_extend member data.

Returns

Copy of the member data.

GetGap_open()

TGap_open CParameters_Base::GetGap_open

(

void

)

const

Get the Gap_open member data.

Returns

Copy of the member data.

GetGaps()

TGaps CHsp_Base::GetGaps

(

void

)

const

Get the Gaps member data.

Returns

Copy of the member data.

GetHit_frame()

THit_frame CHsp_Base::GetHit_frame

(

void

)

const

Get the Hit_frame member data.

Returns

Copy of the member data.

GetHit_from()

THit_from CHsp_Base::GetHit_from

(

void

)

const

Get the Hit_from member data.

Returns

Copy of the member data.

GetHit_strand()

const CHsp_Base::THit_strand & CHsp_Base::GetHit_strand ( void  ) const

inline

Get the Hit_strand member data.

Returns

Reference to the member data.

Definition at line 1748 of file Hsp_.hpp.

References CHsp_Base::CanGetHit_strand(), CHsp_Base::m_Hit_strand, and CSerialObject::ThrowUnassigned().

GetHit_to()

THit_to CHsp_Base::GetHit_to

(

void

)

const

Get the Hit_to member data.

Returns

Copy of the member data.

GetHits()

template<bool LEGACY, unsigned long NHITS, typename derived_t >

const CSearch_Base::THits & CSearch_Base< LEGACY, NHITS, derived_t >::GetHits ( void  ) const

inline

Get the Hits member data.

Returns

Reference to the member data.

Definition at line 587 of file Search_.hpp.

References CSearch_Base< LEGACY, NHITS, derived_t >::m_Hits.

Referenced by CSearch< LEGACY, NHITS >::CalcNSort().

GetHseq()

const THseq& CHsp_Base::GetHseq

(

void

)

const

Get the Hseq member data.

Returns

Reference to the member data.

GetHsp_len()

THsp_len CStatistics_Base::GetHsp_len

(

void

)

const

Get the Hsp_len member data.

Returns

Copy of the member data.

GetHsps()

const THsps& CHit_Base::GetHsps

(

void

)

const

Get the Hsps member data.

Returns

Reference to the member data.

GetId()

const CHitDescr_Base::TId & CHitDescr_Base::GetId ( void  ) const

inline

Get the Id member data.

Returns

Reference to the member data.

Definition at line 346 of file HitDescr_.hpp.

References CHitDescr_Base::CanGetId(), CHitDescr_Base::m_Id, and CSerialObject::ThrowUnassigned().

GetIdentity()

TIdentity CHsp_Base::GetIdentity

(

void

)

const

Get the Identity member data.

Returns

Copy of the member data.

GetInclude()

TInclude CParameters_Base::GetInclude

(

void

)

const

Get the Include member data.

Returns

Copy of the member data.

GetIter_num()

TIter_num CIteration_Base::GetIter_num

(

void

)

const

Get the Iter_num member data.

Returns

Copy of the member data.

GetIterations()

const CResults_Base::TIterations & CResults_Base::GetIterations ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 295 of file Results_.hpp.

References CResults_Base::CheckSelected(), CResults_Base::e_Iterations, and CResults_Base::m_Iterations.

GetKappa()

TKappa CStatistics_Base::GetKappa

(

void

)

const

Get the Kappa member data.

Returns

Copy of the member data.

GetLambda()

TLambda CStatistics_Base::GetLambda

(

void

)

const

Get the Lambda member data.

Returns

Copy of the member data.

GetLen()

TLen CHit_Base::GetLen

(

void

)

const

Get the Len member data.

Returns

Copy of the member data.

GetMatrix()

const TMatrix& CParameters_Base::GetMatrix

(

void

)

const

Get the Matrix member data.

Returns

Reference to the member data.

GetMessage() [1/2]

const CErr_Base::TMessage & CErr_Base::GetMessage ( void  ) const

inline

Get the Message member data.

Returns

Reference to the member data.

Definition at line 264 of file Err_.hpp.

References CErr_Base::CanGetMessage(), CErr_Base::m_Message, and CSerialObject::ThrowUnassigned().

GetMessage() [2/2]

template<bool LEGACY, unsigned long NHITS, typename derived_t >

const CSearch_Base::TMessage & CSearch_Base< LEGACY, NHITS, derived_t >::GetMessage ( void  ) const

inline

Get the Message member data.

Returns

Reference to the member data.

Definition at line 633 of file Search_.hpp.

References CSearch_Base< LEGACY, NHITS, derived_t >::CanGetMessage(), CSearch_Base< LEGACY, NHITS, derived_t >::m_Message, and CSerialObject::ThrowUnassigned().

GetMidline()

const TMidline& CHsp_Base::GetMidline

(

void

)

const

Get the Midline member data.

Returns

Reference to the member data.

GetNum() [1/2]

TNum CHit_Base::GetNum

(

void

)

const

Get the Num member data.

Returns

Copy of the member data.

GetNum() [2/2]

TNum CHsp_Base::GetNum

(

void

)

const

Get the Num member data.

Returns

Copy of the member data.

GetParams()

const CReport_Base::TParams & CReport_Base::GetParams ( void  ) const

inline

Get the Params member data.

Returns

Reference to the member data.

Definition at line 560 of file Report_.hpp.

References CReport_Base::m_Params, and CReport_Base::ResetParams().

GetPattern()

const TPattern& CParameters_Base::GetPattern

(

void

)

const

Get the Pattern member data.

Returns

Reference to the member data.

GetPattern_from()

TPattern_from CHsp_Base::GetPattern_from

(

void

)

const

Get the Pattern_from member data.

Returns

Copy of the member data.

GetPattern_to()

TPattern_to CHsp_Base::GetPattern_to

(

void

)

const

Get the Pattern_to member data.

Returns

Copy of the member data.

GetPositive()

TPositive CHsp_Base::GetPositive

(

void

)

const

Get the Positive member data.

Returns

Copy of the member data.

GetProgram()

const CReport_Base::TProgram & CReport_Base::GetProgram ( void  ) const

inline

Get the Program member data.

Returns

Reference to the member data.

Definition at line 389 of file Report_.hpp.

References CReport_Base::CanGetProgram(), CReport_Base::m_Program, and CSerialObject::ThrowUnassigned().

GetQseq()

const TQseq& CHsp_Base::GetQseq

(

void

)

const

Get the Qseq member data.

Returns

Reference to the member data.

GetQuery_frame()

TQuery_frame CHsp_Base::GetQuery_frame

(

void

)

const

Get the Query_frame member data.

Returns

Copy of the member data.

GetQuery_from()

TQuery_from CHsp_Base::GetQuery_from

(

void

)

const

Get the Query_from member data.

Returns

Copy of the member data.

GetQuery_gencode()

CParameters_Base::TQuery_gencode CParameters_Base::GetQuery_gencode ( void  ) const

inline

Get the Query_gencode member data.

Returns

Copy of the member data.

Definition at line 1240 of file Parameters_.hpp.

References CParameters_Base::CanGetQuery_gencode(), CParameters_Base::m_Query_gencode, and CSerialObject::ThrowUnassigned().

GetQuery_id()

template<bool LEGACY, unsigned long NHITS, typename derived_t >

const CSearch_Base::TQuery_id & CSearch_Base< LEGACY, NHITS, derived_t >::GetQuery_id ( void  ) const

inline

Get the Query_id member data.

Returns

Reference to the member data.

Definition at line 421 of file Search_.hpp.

References CSearch_Base< LEGACY, NHITS, derived_t >::CanGetQuery_id(), CSearch_Base< LEGACY, NHITS, derived_t >::m_Query_id, and CSerialObject::ThrowUnassigned().

GetQuery_len()

template<bool LEGACY, unsigned long NHITS, typename derived_t >

CSearch_Base::TQuery_len CSearch_Base< LEGACY, NHITS, derived_t >::GetQuery_len ( void  ) const

inline

Get the Query_len member data.

Returns

Copy of the member data.

Definition at line 522 of file Search_.hpp.