Code generated by DATATOOL from 'general.asn' (module 'NCBI-General')

Collaboration diagram for Code generated by DATATOOL from 'general.asn' (module 'NCBI-General'):

Classes
class	CDate_Base
	StringStore is really a VisibleString. More...
class	CDate_std_Base
	NOTE: this is NOT a unix tm struct. More...
class	CDbtag_Base
	Dbtag is generalized for tagging eg. More...
class	CInt_fuzz_Base
	**** Int-fuzz ********************************************** * * uncertainties in integer values More...
class	CInt_fuzz_Base::C_Range
	max to min More...
class	CName_std_Base
	Structured names. More...
class	CObject_id_Base
	Object-id can tag or name anything. More...
class	CPerson_id_Base
	Person-id is to define a std element for people. More...
class	CUser_field_Base
	CUser_field_Base –. More...
class	CUser_field_Base::C_Data
	field contents More...
class	CUser_object_Base
	**** User-object ********************************************** * * a general object for a user defined structured data item * used by Seq-feat and Seq-descr More...

Typedefs
typedef CSerialObject	CDate_Base::Tparent
typedef string	CDate_Base::TStr
typedef CDate_std	CDate_Base::TStd
typedef CSerialObject	CDate_std_Base::Tparent
typedef int	CDate_std_Base::TYear
typedef int	CDate_std_Base::TMonth
typedef int	CDate_std_Base::TDay
typedef string	CDate_std_Base::TSeason
typedef int	CDate_std_Base::THour
typedef int	CDate_std_Base::TMinute
typedef int	CDate_std_Base::TSecond
typedef Tparent::CMemberIndex< E_memberIndex, 8 >	CDate_std_Base::TmemberIndex
typedef CSerialObject	CDbtag_Base::Tparent
typedef string	CDbtag_Base::TDb
typedef CObject_id	CDbtag_Base::TTag
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CDbtag_Base::TmemberIndex
typedef CSerialObject	CInt_fuzz_Base::Tparent
typedef CSerialObject	CInt_fuzz_Base::C_Range::Tparent
typedef TSeqPos	CInt_fuzz_Base::C_Range::TMax
typedef TSeqPos	CInt_fuzz_Base::C_Range::TMin
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CInt_fuzz_Base::C_Range::TmemberIndex
typedef TSeqPos	CInt_fuzz_Base::TP_m
typedef C_Range	CInt_fuzz_Base::TRange
typedef int	CInt_fuzz_Base::TPct
typedef ELim	CInt_fuzz_Base::TLim
typedef list< TSeqPos >	CInt_fuzz_Base::TAlt
typedef CSerialObject	CName_std_Base::Tparent
typedef string	CName_std_Base::TLast
typedef string	CName_std_Base::TFirst
typedef string	CName_std_Base::TMiddle
typedef string	CName_std_Base::TFull
typedef string	CName_std_Base::TInitials
typedef string	CName_std_Base::TSuffix
typedef string	CName_std_Base::TTitle
typedef Tparent::CMemberIndex< E_memberIndex, 8 >	CName_std_Base::TmemberIndex
typedef CSerialObject	CObject_id_Base::Tparent
typedef int	CObject_id_Base::TId
typedef string	CObject_id_Base::TStr
typedef CSerialObject	CPerson_id_Base::Tparent
typedef CDbtag	CPerson_id_Base::TDbtag
typedef CName_std	CPerson_id_Base::TName
typedef string	CPerson_id_Base::TMl
typedef string	CPerson_id_Base::TStr
typedef string	CPerson_id_Base::TConsortium
typedef CSerialObject	CUser_field_Base::Tparent
typedef CSerialObject	CUser_field_Base::C_Data::Tparent
typedef CStringUTF8	CUser_field_Base::C_Data::TStr
typedef int	CUser_field_Base::C_Data::TInt
typedef double	CUser_field_Base::C_Data::TReal
typedef bool	CUser_field_Base::C_Data::TBool
typedef vector< char >	CUser_field_Base::C_Data::TOs
typedef CUser_object	CUser_field_Base::C_Data::TObject
typedef vector< CStringUTF8 >	CUser_field_Base::C_Data::TStrs
typedef vector< int >	CUser_field_Base::C_Data::TInts
typedef vector< double >	CUser_field_Base::C_Data::TReals
typedef vector< vector< char > * >	CUser_field_Base::C_Data::TOss
typedef vector< CRef< CUser_field > >	CUser_field_Base::C_Data::TFields
typedef vector< CRef< CUser_object > >	CUser_field_Base::C_Data::TObjects
typedef CObject_id	CUser_field_Base::TLabel
typedef int	CUser_field_Base::TNum
typedef C_Data	CUser_field_Base::TData
typedef Tparent::CMemberIndex< E_memberIndex, 4 >	CUser_field_Base::TmemberIndex
typedef CSerialObject	CUser_object_Base::Tparent
typedef string	CUser_object_Base::TClass
typedef CObject_id	CUser_object_Base::TType
typedef vector< CRef< CUser_field > >	CUser_object_Base::TData
typedef Tparent::CMemberIndex< E_memberIndex, 4 >	CUser_object_Base::TmemberIndex

Enumerations
enum	CDate_Base::E_Choice { CDate_Base::e_not_set = 0 , CDate_Base::e_Str , CDate_Base::e_Std }
	Choice variants. More...
enum	CDate_Base::E_ChoiceStopper { CDate_Base::e_MaxChoice = 3 }
	Maximum+1 value of the choice variant enumerator. More...
enum class	CDate_std_Base::E_memberIndex {   CDate_std_Base::e__allMandatory = 0 , CDate_std_Base::e_year , CDate_std_Base::e_month , CDate_std_Base::e_day ,   CDate_std_Base::e_season , CDate_std_Base::e_hour , CDate_std_Base::e_minute , CDate_std_Base::e_second }
enum class	CDbtag_Base::E_memberIndex { CDbtag_Base::e__allMandatory = 0 , CDbtag_Base::e_db , CDbtag_Base::e_tag }
enum class	CInt_fuzz_Base::C_Range::E_memberIndex { CInt_fuzz_Base::C_Range::e__allMandatory = 0 , CInt_fuzz_Base::C_Range::e_max , CInt_fuzz_Base::C_Range::e_min }
enum	CInt_fuzz_Base::ELim {   CInt_fuzz_Base::eLim_unk = 0 , CInt_fuzz_Base::eLim_gt = 1 , CInt_fuzz_Base::eLim_lt = 2 , CInt_fuzz_Base::eLim_tr = 3 ,   CInt_fuzz_Base::eLim_tl = 4 , CInt_fuzz_Base::eLim_circle = 5 , CInt_fuzz_Base::eLim_other = 255 }
	some limit value More...
enum	CInt_fuzz_Base::E_Choice {   CInt_fuzz_Base::e_not_set = 0 , CInt_fuzz_Base::e_P_m , CInt_fuzz_Base::e_Range , CInt_fuzz_Base::e_Pct ,   CInt_fuzz_Base::e_Lim , CInt_fuzz_Base::e_Alt }
	Choice variants. More...
enum	CInt_fuzz_Base::E_ChoiceStopper { CInt_fuzz_Base::e_MaxChoice = 6 }
	Maximum+1 value of the choice variant enumerator. More...
enum class	CName_std_Base::E_memberIndex {   CName_std_Base::e__allMandatory = 0 , CName_std_Base::e_last , CName_std_Base::e_first , CName_std_Base::e_middle ,   CName_std_Base::e_full , CName_std_Base::e_initials , CName_std_Base::e_suffix , CName_std_Base::e_title }
enum	CObject_id_Base::E_Choice { CObject_id_Base::e_not_set = 0 , CObject_id_Base::e_Id , CObject_id_Base::e_Str }
	Choice variants. More...
enum	CObject_id_Base::E_ChoiceStopper { CObject_id_Base::e_MaxChoice = 3 }
	Maximum+1 value of the choice variant enumerator. More...
enum	CPerson_id_Base::E_Choice {   CPerson_id_Base::e_not_set = 0 , CPerson_id_Base::e_Dbtag , CPerson_id_Base::e_Name , CPerson_id_Base::e_Ml ,   CPerson_id_Base::e_Str , CPerson_id_Base::e_Consortium }
	Choice variants. More...
enum	CPerson_id_Base::E_ChoiceStopper { CPerson_id_Base::e_MaxChoice = 6 }
	Maximum+1 value of the choice variant enumerator. More...
enum	CUser_field_Base::C_Data::E_Choice {   CUser_field_Base::C_Data::e_not_set = 0 , CUser_field_Base::C_Data::e_Str , CUser_field_Base::C_Data::e_Int , CUser_field_Base::C_Data::e_Real ,   CUser_field_Base::C_Data::e_Bool , CUser_field_Base::C_Data::e_Os , CUser_field_Base::C_Data::e_Object , CUser_field_Base::C_Data::e_Strs ,   CUser_field_Base::C_Data::e_Ints , CUser_field_Base::C_Data::e_Reals , CUser_field_Base::C_Data::e_Oss , CUser_field_Base::C_Data::e_Fields ,   CUser_field_Base::C_Data::e_Objects }
	Choice variants. More...
enum	CUser_field_Base::C_Data::E_ChoiceStopper { CUser_field_Base::C_Data::e_MaxChoice = 13 }
	Maximum+1 value of the choice variant enumerator. More...
enum class	CUser_field_Base::E_memberIndex { CUser_field_Base::e__allMandatory = 0 , CUser_field_Base::e_label , CUser_field_Base::e_num , CUser_field_Base::e_data }
enum class	CUser_object_Base::E_memberIndex { CUser_object_Base::e__allMandatory = 0 , CUser_object_Base::e_class , CUser_object_Base::e_type , CUser_object_Base::e_data }

Functions
	CDate_Base::CDate_Base (void)
virtual	CDate_Base::~CDate_Base (void)
	CDate_Base::DECLARE_INTERNAL_TYPE_INFO ()
virtual void	CDate_Base::Reset (void)
	Reset the whole object. More...
virtual void	CDate_Base::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CDate_Base::Which (void) const
	Which variant is currently selected. More...
void	CDate_Base::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CDate_Base::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CDate_Base::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CDate_Base::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CDate_Base::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CDate_Base::IsStr (void) const
	Check if variant Str is selected. More...
const TStr &	CDate_Base::GetStr (void) const
	Get the variant data. More...
TStr &	CDate_Base::SetStr (void)
	Select the variant. More...
void	CDate_Base::SetStr (const TStr &value)
	Select the variant and set its data. More...
bool	CDate_Base::IsStd (void) const
	Check if variant Std is selected. More...
const TStd &	CDate_Base::GetStd (void) const
	Get the variant data. More...
TStd &	CDate_Base::SetStd (void)
	Select the variant. More...
void	CDate_Base::SetStd (TStd &value)
	Select the variant and set its data. More...
	CDate_Base::CDate_Base (const CDate_Base &)
CDate_Base &	CDate_Base::operator= (const CDate_Base &)
void	CDate_Base::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
	CDate_std_Base::CDate_std_Base (void)
virtual	CDate_std_Base::~CDate_std_Base (void)
	CDate_std_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CDate_std_Base::IsSetYear (void) const
	full year (including 1900) Check if a value has been assigned to Year data member. More...
bool	CDate_std_Base::CanGetYear (void) const
	Check if it is safe to call GetYear method. More...
void	CDate_std_Base::ResetYear (void)
	Reset Year data member. More...
TYear	CDate_std_Base::GetYear (void) const
	Get the Year member data. More...
void	CDate_std_Base::SetYear (TYear value)
	Assign a value to Year data member. More...
TYear &	CDate_std_Base::SetYear (void)
	Assign a value to Year data member. More...
bool	CDate_std_Base::IsSetMonth (void) const
	month (1-12) Check if a value has been assigned to Month data member. More...
bool	CDate_std_Base::CanGetMonth (void) const
	Check if it is safe to call GetMonth method. More...
void	CDate_std_Base::ResetMonth (void)
	Reset Month data member. More...
TMonth	CDate_std_Base::GetMonth (void) const
	Get the Month member data. More...
void	CDate_std_Base::SetMonth (TMonth value)
	Assign a value to Month data member. More...
TMonth &	CDate_std_Base::SetMonth (void)
	Assign a value to Month data member. More...
bool	CDate_std_Base::IsSetDay (void) const
	day of month (1-31) Check if a value has been assigned to Day data member. More...
bool	CDate_std_Base::CanGetDay (void) const
	Check if it is safe to call GetDay method. More...
void	CDate_std_Base::ResetDay (void)
	Reset Day data member. More...
TDay	CDate_std_Base::GetDay (void) const
	Get the Day member data. More...
void	CDate_std_Base::SetDay (TDay value)
	Assign a value to Day data member. More...
TDay &	CDate_std_Base::SetDay (void)
	Assign a value to Day data member. More...
bool	CDate_std_Base::IsSetSeason (void) const
	for "spring", "may-june", etc Check if a value has been assigned to Season data member. More...
bool	CDate_std_Base::CanGetSeason (void) const
	Check if it is safe to call GetSeason method. More...
void	CDate_std_Base::ResetSeason (void)
	Reset Season data member. More...
const TSeason &	CDate_std_Base::GetSeason (void) const
	Get the Season member data. More...
void	CDate_std_Base::SetSeason (const TSeason &value)
	Assign a value to Season data member. More...
void	CDate_std_Base::SetSeason (TSeason &&value)
TSeason &	CDate_std_Base::SetSeason (void)
	Assign a value to Season data member. More...
bool	CDate_std_Base::IsSetHour (void) const
	hour of day (0-23) Check if a value has been assigned to Hour data member. More...
bool	CDate_std_Base::CanGetHour (void) const
	Check if it is safe to call GetHour method. More...
void	CDate_std_Base::ResetHour (void)
	Reset Hour data member. More...
THour	CDate_std_Base::GetHour (void) const
	Get the Hour member data. More...
void	CDate_std_Base::SetHour (THour value)
	Assign a value to Hour data member. More...
THour &	CDate_std_Base::SetHour (void)
	Assign a value to Hour data member. More...
bool	CDate_std_Base::IsSetMinute (void) const
	minute of hour (0-59) Check if a value has been assigned to Minute data member. More...
bool	CDate_std_Base::CanGetMinute (void) const
	Check if it is safe to call GetMinute method. More...
void	CDate_std_Base::ResetMinute (void)
	Reset Minute data member. More...
TMinute	CDate_std_Base::GetMinute (void) const
	Get the Minute member data. More...
void	CDate_std_Base::SetMinute (TMinute value)
	Assign a value to Minute data member. More...
TMinute &	CDate_std_Base::SetMinute (void)
	Assign a value to Minute data member. More...
bool	CDate_std_Base::IsSetSecond (void) const
	second of minute (0-59) Check if a value has been assigned to Second data member. More...
bool	CDate_std_Base::CanGetSecond (void) const
	Check if it is safe to call GetSecond method. More...
void	CDate_std_Base::ResetSecond (void)
	Reset Second data member. More...
TSecond	CDate_std_Base::GetSecond (void) const
	Get the Second member data. More...
void	CDate_std_Base::SetSecond (TSecond value)
	Assign a value to Second data member. More...
TSecond &	CDate_std_Base::SetSecond (void)
	Assign a value to Second data member. More...
virtual void	CDate_std_Base::Reset (void)
	Reset the whole object. More...
	CDate_std_Base::CDate_std_Base (const CDate_std_Base &)
CDate_std_Base &	CDate_std_Base::operator= (const CDate_std_Base &)
	CDbtag_Base::CDbtag_Base (void)
virtual	CDbtag_Base::~CDbtag_Base (void)
	CDbtag_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CDbtag_Base::IsSetDb (void) const
	name of database or system Check if a value has been assigned to Db data member. More...
bool	CDbtag_Base::CanGetDb (void) const
	Check if it is safe to call GetDb method. More...
void	CDbtag_Base::ResetDb (void)
	Reset Db data member. More...
const TDb &	CDbtag_Base::GetDb (void) const
	Get the Db member data. More...
void	CDbtag_Base::SetDb (const TDb &value)
	Assign a value to Db data member. More...
void	CDbtag_Base::SetDb (TDb &&value)
TDb &	CDbtag_Base::SetDb (void)
	Assign a value to Db data member. More...
bool	CDbtag_Base::IsSetTag (void) const
	appropriate tag Check if a value has been assigned to Tag data member. More...
bool	CDbtag_Base::CanGetTag (void) const
	Check if it is safe to call GetTag method. More...
void	CDbtag_Base::ResetTag (void)
	Reset Tag data member. More...
const TTag &	CDbtag_Base::GetTag (void) const
	Get the Tag member data. More...
void	CDbtag_Base::SetTag (TTag &value)
	Assign a value to Tag data member. More...
TTag &	CDbtag_Base::SetTag (void)
	Assign a value to Tag data member. More...
virtual void	CDbtag_Base::Reset (void)
	Reset the whole object. More...
	CDbtag_Base::CDbtag_Base (const CDbtag_Base &)
CDbtag_Base &	CDbtag_Base::operator= (const CDbtag_Base &)
	CInt_fuzz_Base::CInt_fuzz_Base (void)
virtual	CInt_fuzz_Base::~CInt_fuzz_Base (void)
	CInt_fuzz_Base::DECLARE_INTERNAL_TYPE_INFO ()
	CInt_fuzz_Base::C_Range::C_Range (void)
	CInt_fuzz_Base::C_Range::~C_Range (void)
	CInt_fuzz_Base::C_Range::DECLARE_INTERNAL_TYPE_INFO ()
bool	CInt_fuzz_Base::C_Range::IsSetMax (void) const
	Check if a value has been assigned to Max data member. More...
bool	CInt_fuzz_Base::C_Range::CanGetMax (void) const
	Check if it is safe to call GetMax method. More...
void	CInt_fuzz_Base::C_Range::ResetMax (void)
	Reset Max data member. More...
TMax	CInt_fuzz_Base::C_Range::GetMax (void) const
	Get the Max member data. More...
void	CInt_fuzz_Base::C_Range::SetMax (TMax value)
	Assign a value to Max data member. More...
TMax &	CInt_fuzz_Base::C_Range::SetMax (void)
	Assign a value to Max data member. More...
bool	CInt_fuzz_Base::C_Range::IsSetMin (void) const
	Check if a value has been assigned to Min data member. More...
bool	CInt_fuzz_Base::C_Range::CanGetMin (void) const
	Check if it is safe to call GetMin method. More...
void	CInt_fuzz_Base::C_Range::ResetMin (void)
	Reset Min data member. More...
TMin	CInt_fuzz_Base::C_Range::GetMin (void) const
	Get the Min member data. More...
void	CInt_fuzz_Base::C_Range::SetMin (TMin value)
	Assign a value to Min data member. More...
TMin &	CInt_fuzz_Base::C_Range::SetMin (void)
	Assign a value to Min data member. More...
void	CInt_fuzz_Base::C_Range::Reset (void)
	Reset the whole object. More...
	CInt_fuzz_Base::C_Range::C_Range (const C_Range &)
C_Range &	CInt_fuzz_Base::C_Range::operator= (const C_Range &)
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CInt_fuzz_Base::ELim (void)
	Access to ELim's attributes (values, names) as defined in spec. More...
virtual void	CInt_fuzz_Base::Reset (void)
	Reset the whole object. More...
virtual void	CInt_fuzz_Base::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CInt_fuzz_Base::Which (void) const
	Which variant is currently selected. More...
void	CInt_fuzz_Base::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CInt_fuzz_Base::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CInt_fuzz_Base::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CInt_fuzz_Base::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CInt_fuzz_Base::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CInt_fuzz_Base::IsP_m (void) const
	Check if variant P_m is selected. More...
TP_m	CInt_fuzz_Base::GetP_m (void) const
	Get the variant data. More...
TP_m &	CInt_fuzz_Base::SetP_m (void)
	Select the variant. More...
void	CInt_fuzz_Base::SetP_m (TP_m value)
	Select the variant and set its data. More...
bool	CInt_fuzz_Base::IsRange (void) const
	Check if variant Range is selected. More...
const TRange &	CInt_fuzz_Base::GetRange (void) const
	Get the variant data. More...
TRange &	CInt_fuzz_Base::SetRange (void)
	Select the variant. More...
void	CInt_fuzz_Base::SetRange (TRange &value)
	Select the variant and set its data. More...
bool	CInt_fuzz_Base::IsPct (void) const
	Check if variant Pct is selected. More...
TPct	CInt_fuzz_Base::GetPct (void) const
	Get the variant data. More...
TPct &	CInt_fuzz_Base::SetPct (void)
	Select the variant. More...
void	CInt_fuzz_Base::SetPct (TPct value)
	Select the variant and set its data. More...
bool	CInt_fuzz_Base::IsLim (void) const
	Check if variant Lim is selected. More...
TLim	CInt_fuzz_Base::GetLim (void) const
	Get the variant data. More...
TLim &	CInt_fuzz_Base::SetLim (void)
	Select the variant. More...
void	CInt_fuzz_Base::SetLim (TLim value)
	Select the variant and set its data. More...
bool	CInt_fuzz_Base::IsAlt (void) const
	Check if variant Alt is selected. More...
const TAlt &	CInt_fuzz_Base::GetAlt (void) const
	Get the variant data. More...
TAlt &	CInt_fuzz_Base::SetAlt (void)
	Select the variant. More...
	CInt_fuzz_Base::CInt_fuzz_Base (const CInt_fuzz_Base &)
CInt_fuzz_Base &	CInt_fuzz_Base::operator= (const CInt_fuzz_Base &)
void	CInt_fuzz_Base::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
	CName_std_Base::CName_std_Base (void)
virtual	CName_std_Base::~CName_std_Base (void)
	CName_std_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CName_std_Base::IsSetLast (void) const
	Check if a value has been assigned to Last data member. More...
bool	CName_std_Base::CanGetLast (void) const
	Check if it is safe to call GetLast method. More...
void	CName_std_Base::ResetLast (void)
	Reset Last data member. More...
const TLast &	CName_std_Base::GetLast (void) const
	Get the Last member data. More...
void	CName_std_Base::SetLast (const TLast &value)
	Assign a value to Last data member. More...
void	CName_std_Base::SetLast (TLast &&value)
TLast &	CName_std_Base::SetLast (void)
	Assign a value to Last data member. More...
bool	CName_std_Base::IsSetFirst (void) const
	Check if a value has been assigned to First data member. More...
bool	CName_std_Base::CanGetFirst (void) const
	Check if it is safe to call GetFirst method. More...
void	CName_std_Base::ResetFirst (void)
	Reset First data member. More...
const TFirst &	CName_std_Base::GetFirst (void) const
	Get the First member data. More...
void	CName_std_Base::SetFirst (const TFirst &value)
	Assign a value to First data member. More...
void	CName_std_Base::SetFirst (TFirst &&value)
TFirst &	CName_std_Base::SetFirst (void)
	Assign a value to First data member. More...
bool	CName_std_Base::IsSetMiddle (void) const
	Check if a value has been assigned to Middle data member. More...
bool	CName_std_Base::CanGetMiddle (void) const
	Check if it is safe to call GetMiddle method. More...
void	CName_std_Base::ResetMiddle (void)
	Reset Middle data member. More...
const TMiddle &	CName_std_Base::GetMiddle (void) const
	Get the Middle member data. More...
void	CName_std_Base::SetMiddle (const TMiddle &value)
	Assign a value to Middle data member. More...
void	CName_std_Base::SetMiddle (TMiddle &&value)
TMiddle &	CName_std_Base::SetMiddle (void)
	Assign a value to Middle data member. More...
bool	CName_std_Base::IsSetFull (void) const
	full name eg. More...
bool	CName_std_Base::CanGetFull (void) const
	Check if it is safe to call GetFull method. More...
void	CName_std_Base::ResetFull (void)
	Reset Full data member. More...
const TFull &	CName_std_Base::GetFull (void) const
	Get the Full member data. More...
void	CName_std_Base::SetFull (const TFull &value)
	Assign a value to Full data member. More...
void	CName_std_Base::SetFull (TFull &&value)
TFull &	CName_std_Base::SetFull (void)
	Assign a value to Full data member. More...
bool	CName_std_Base::IsSetInitials (void) const
	first + middle initials Check if a value has been assigned to Initials data member. More...
bool	CName_std_Base::CanGetInitials (void) const
	Check if it is safe to call GetInitials method. More...
void	CName_std_Base::ResetInitials (void)
	Reset Initials data member. More...
const TInitials &	CName_std_Base::GetInitials (void) const
	Get the Initials member data. More...
void	CName_std_Base::SetInitials (const TInitials &value)
	Assign a value to Initials data member. More...
void	CName_std_Base::SetInitials (TInitials &&value)
TInitials &	CName_std_Base::SetInitials (void)
	Assign a value to Initials data member. More...
bool	CName_std_Base::IsSetSuffix (void) const
	Jr, Sr, III Check if a value has been assigned to Suffix data member. More...
bool	CName_std_Base::CanGetSuffix (void) const
	Check if it is safe to call GetSuffix method. More...
void	CName_std_Base::ResetSuffix (void)
	Reset Suffix data member. More...
const TSuffix &	CName_std_Base::GetSuffix (void) const
	Get the Suffix member data. More...
void	CName_std_Base::SetSuffix (const TSuffix &value)
	Assign a value to Suffix data member. More...
void	CName_std_Base::SetSuffix (TSuffix &&value)
TSuffix &	CName_std_Base::SetSuffix (void)
	Assign a value to Suffix data member. More...
bool	CName_std_Base::IsSetTitle (void) const
	Dr., Sister, etc Check if a value has been assigned to Title data member. More...
bool	CName_std_Base::CanGetTitle (void) const
	Check if it is safe to call GetTitle method. More...
void	CName_std_Base::ResetTitle (void)
	Reset Title data member. More...
const TTitle &	CName_std_Base::GetTitle (void) const
	Get the Title member data. More...
void	CName_std_Base::SetTitle (const TTitle &value)
	Assign a value to Title data member. More...
void	CName_std_Base::SetTitle (TTitle &&value)
TTitle &	CName_std_Base::SetTitle (void)
	Assign a value to Title data member. More...
virtual void	CName_std_Base::Reset (void)
	Reset the whole object. More...
	CName_std_Base::CName_std_Base (const CName_std_Base &)
CName_std_Base &	CName_std_Base::operator= (const CName_std_Base &)
	CObject_id_Base::CObject_id_Base (void)
virtual	CObject_id_Base::~CObject_id_Base (void)
	CObject_id_Base::DECLARE_INTERNAL_TYPE_INFO ()
virtual void	CObject_id_Base::Reset (void)
	Reset the whole object. More...
virtual void	CObject_id_Base::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CObject_id_Base::Which (void) const
	Which variant is currently selected. More...
void	CObject_id_Base::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CObject_id_Base::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CObject_id_Base::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CObject_id_Base::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CObject_id_Base::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CObject_id_Base::IsId (void) const
	Check if variant Id is selected. More...
TId	CObject_id_Base::GetId (void) const
	Get the variant data. More...
TId &	CObject_id_Base::SetId (void)
	Select the variant. More...
void	CObject_id_Base::SetId (TId value)
	Select the variant and set its data. More...
bool	CObject_id_Base::IsStr (void) const
	Check if variant Str is selected. More...
const TStr &	CObject_id_Base::GetStr (void) const
	Get the variant data. More...
TStr &	CObject_id_Base::SetStr (void)
	Select the variant. More...
void	CObject_id_Base::SetStr (const TStr &value)
	Select the variant and set its data. More...
	CObject_id_Base::CObject_id_Base (const CObject_id_Base &)
CObject_id_Base &	CObject_id_Base::operator= (const CObject_id_Base &)
void	CObject_id_Base::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
	CPerson_id_Base::CPerson_id_Base (void)
virtual	CPerson_id_Base::~CPerson_id_Base (void)
	CPerson_id_Base::DECLARE_INTERNAL_TYPE_INFO ()
virtual void	CPerson_id_Base::Reset (void)
	Reset the whole object. More...
virtual void	CPerson_id_Base::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CPerson_id_Base::Which (void) const
	Which variant is currently selected. More...
void	CPerson_id_Base::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CPerson_id_Base::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CPerson_id_Base::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CPerson_id_Base::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CPerson_id_Base::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CPerson_id_Base::IsDbtag (void) const
	Check if variant Dbtag is selected. More...
const TDbtag &	CPerson_id_Base::GetDbtag (void) const
	Get the variant data. More...
TDbtag &	CPerson_id_Base::SetDbtag (void)
	Select the variant. More...
void	CPerson_id_Base::SetDbtag (TDbtag &value)
	Select the variant and set its data. More...
bool	CPerson_id_Base::IsName (void) const
	Check if variant Name is selected. More...
const TName &	CPerson_id_Base::GetName (void) const
	Get the variant data. More...
TName &	CPerson_id_Base::SetName (void)
	Select the variant. More...
void	CPerson_id_Base::SetName (TName &value)
	Select the variant and set its data. More...
bool	CPerson_id_Base::IsMl (void) const
	Check if variant Ml is selected. More...
const TMl &	CPerson_id_Base::GetMl (void) const
	Get the variant data. More...
TMl &	CPerson_id_Base::SetMl (void)
	Select the variant. More...
void	CPerson_id_Base::SetMl (const TMl &value)
	Select the variant and set its data. More...
bool	CPerson_id_Base::IsStr (void) const
	Check if variant Str is selected. More...
const TStr &	CPerson_id_Base::GetStr (void) const
	Get the variant data. More...
TStr &	CPerson_id_Base::SetStr (void)
	Select the variant. More...
void	CPerson_id_Base::SetStr (const TStr &value)
	Select the variant and set its data. More...
bool	CPerson_id_Base::IsConsortium (void) const
	Check if variant Consortium is selected. More...
const TConsortium &	CPerson_id_Base::GetConsortium (void) const
	Get the variant data. More...
TConsortium &	CPerson_id_Base::SetConsortium (void)
	Select the variant. More...
void	CPerson_id_Base::SetConsortium (const TConsortium &value)
	Select the variant and set its data. More...
	CPerson_id_Base::CPerson_id_Base (const CPerson_id_Base &)
CPerson_id_Base &	CPerson_id_Base::operator= (const CPerson_id_Base &)
void	CPerson_id_Base::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
	CUser_field_Base::CUser_field_Base (void)
virtual	CUser_field_Base::~CUser_field_Base (void)
	CUser_field_Base::DECLARE_INTERNAL_TYPE_INFO ()
	CUser_field_Base::C_Data::C_Data (void)
	CUser_field_Base::C_Data::~C_Data (void)
	CUser_field_Base::C_Data::DECLARE_INTERNAL_TYPE_INFO ()
void	CUser_field_Base::C_Data::Reset (void)
	Reset the whole object. More...
void	CUser_field_Base::C_Data::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CUser_field_Base::C_Data::Which (void) const
	Which variant is currently selected. More...
void	CUser_field_Base::C_Data::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CUser_field_Base::C_Data::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CUser_field_Base::C_Data::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CUser_field_Base::C_Data::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CUser_field_Base::C_Data::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CUser_field_Base::C_Data::IsStr (void) const
	Check if variant Str is selected. More...
const TStr &	CUser_field_Base::C_Data::GetStr (void) const
	Get the variant data. More...
TStr &	CUser_field_Base::C_Data::SetStr (void)
	Select the variant. More...
void	CUser_field_Base::C_Data::SetStr (const TStr &value)
	Select the variant and set its data. More...
bool	CUser_field_Base::C_Data::IsInt (void) const
	Check if variant Int is selected. More...
TInt	CUser_field_Base::C_Data::GetInt (void) const
	Get the variant data. More...
TInt &	CUser_field_Base::C_Data::SetInt (void)
	Select the variant. More...
void	CUser_field_Base::C_Data::SetInt (TInt value)
	Select the variant and set its data. More...
bool	CUser_field_Base::C_Data::IsReal (void) const
	Check if variant Real is selected. More...
TReal	CUser_field_Base::C_Data::GetReal (void) const
	Get the variant data. More...
TReal &	CUser_field_Base::C_Data::SetReal (void)
	Select the variant. More...
void	CUser_field_Base::C_Data::SetReal (TReal value)
	Select the variant and set its data. More...
bool	CUser_field_Base::C_Data::IsBool (void) const
	Check if variant Bool is selected. More...
TBool	CUser_field_Base::C_Data::GetBool (void) const
	Get the variant data. More...
TBool &	CUser_field_Base::C_Data::SetBool (void)
	Select the variant. More...
void	CUser_field_Base::C_Data::SetBool (TBool value)
	Select the variant and set its data. More...
bool	CUser_field_Base::C_Data::IsOs (void) const
	Check if variant Os is selected. More...
const TOs &	CUser_field_Base::C_Data::GetOs (void) const
	Get the variant data. More...
TOs &	CUser_field_Base::C_Data::SetOs (void)
	Select the variant. More...
bool	CUser_field_Base::C_Data::IsObject (void) const
	Check if variant Object is selected. More...
const TObject &	CUser_field_Base::C_Data::GetObject (void) const
	Get the variant data. More...
TObject &	CUser_field_Base::C_Data::SetObject (void)
	Select the variant. More...
void	CUser_field_Base::C_Data::SetObject (TObject &value)
	Select the variant and set its data. More...
bool	CUser_field_Base::C_Data::IsStrs (void) const
	Check if variant Strs is selected. More...
const TStrs &	CUser_field_Base::C_Data::GetStrs (void) const
	Get the variant data. More...
TStrs &	CUser_field_Base::C_Data::SetStrs (void)
	Select the variant. More...
bool	CUser_field_Base::C_Data::IsInts (void) const
	Check if variant Ints is selected. More...
const TInts &	CUser_field_Base::C_Data::GetInts (void) const
	Get the variant data. More...
TInts &	CUser_field_Base::C_Data::SetInts (void)
	Select the variant. More...
bool	CUser_field_Base::C_Data::IsReals (void) const
	Check if variant Reals is selected. More...
const TReals &	CUser_field_Base::C_Data::GetReals (void) const
	Get the variant data. More...
TReals &	CUser_field_Base::C_Data::SetReals (void)
	Select the variant. More...
bool	CUser_field_Base::C_Data::IsOss (void) const
	Check if variant Oss is selected. More...
const TOss &	CUser_field_Base::C_Data::GetOss (void) const
	Get the variant data. More...
TOss &	CUser_field_Base::C_Data::SetOss (void)
	Select the variant. More...
bool	CUser_field_Base::C_Data::IsFields (void) const
	Check if variant Fields is selected. More...
const TFields &	CUser_field_Base::C_Data::GetFields (void) const
	Get the variant data. More...
TFields &	CUser_field_Base::C_Data::SetFields (void)
	Select the variant. More...
bool	CUser_field_Base::C_Data::IsObjects (void) const
	Check if variant Objects is selected. More...
const TObjects &	CUser_field_Base::C_Data::GetObjects (void) const
	Get the variant data. More...
TObjects &	CUser_field_Base::C_Data::SetObjects (void)
	Select the variant. More...
	CUser_field_Base::C_Data::C_Data (const C_Data &)
C_Data &	CUser_field_Base::C_Data::operator= (const C_Data &)
void	CUser_field_Base::C_Data::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
bool	CUser_field_Base::IsSetLabel (void) const
	field label Check if a value has been assigned to Label data member. More...
bool	CUser_field_Base::CanGetLabel (void) const
	Check if it is safe to call GetLabel method. More...
void	CUser_field_Base::ResetLabel (void)
	Reset Label data member. More...
const TLabel &	CUser_field_Base::GetLabel (void) const
	Get the Label member data. More...
void	CUser_field_Base::SetLabel (TLabel &value)
	Assign a value to Label data member. More...
TLabel &	CUser_field_Base::SetLabel (void)
	Assign a value to Label data member. More...
bool	CUser_field_Base::IsSetNum (void) const
	required for strs, ints, reals, oss Check if a value has been assigned to Num data member. More...
bool	CUser_field_Base::CanGetNum (void) const
	Check if it is safe to call GetNum method. More...
void	CUser_field_Base::ResetNum (void)
	Reset Num data member. More...
TNum	CUser_field_Base::GetNum (void) const
	Get the Num member data. More...
void	CUser_field_Base::SetNum (TNum value)
	Assign a value to Num data member. More...
TNum &	CUser_field_Base::SetNum (void)
	Assign a value to Num data member. More...
bool	CUser_field_Base::IsSetData (void) const
	Check if a value has been assigned to Data data member. More...
bool	CUser_field_Base::CanGetData (void) const
	Check if it is safe to call GetData method. More...
void	CUser_field_Base::ResetData (void)
	Reset Data data member. More...
const TData &	CUser_field_Base::GetData (void) const
	Get the Data member data. More...
void	CUser_field_Base::SetData (TData &value)
	Assign a value to Data data member. More...
TData &	CUser_field_Base::SetData (void)
	Assign a value to Data data member. More...
virtual void	CUser_field_Base::Reset (void)
	Reset the whole object. More...
	CUser_field_Base::CUser_field_Base (const CUser_field_Base &)
CUser_field_Base &	CUser_field_Base::operator= (const CUser_field_Base &)
	CUser_object_Base::CUser_object_Base (void)
virtual	CUser_object_Base::~CUser_object_Base (void)
	CUser_object_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CUser_object_Base::IsSetClass (void) const
	endeavor which designed this object Check if a value has been assigned to Class data member. More...
bool	CUser_object_Base::CanGetClass (void) const
	Check if it is safe to call GetClass method. More...
void	CUser_object_Base::ResetClass (void)
	Reset Class data member. More...
const TClass &	CUser_object_Base::GetClass (void) const
	Get the Class member data. More...
void	CUser_object_Base::SetClass (const TClass &value)
	Assign a value to Class data member. More...
void	CUser_object_Base::SetClass (TClass &&value)
TClass &	CUser_object_Base::SetClass (void)
	Assign a value to Class data member. More...
bool	CUser_object_Base::IsSetType (void) const
	type of object within class Check if a value has been assigned to Type data member. More...
bool	CUser_object_Base::CanGetType (void) const
	Check if it is safe to call GetType method. More...
void	CUser_object_Base::ResetType (void)
	Reset Type data member. More...
const TType &	CUser_object_Base::GetType (void) const
	Get the Type member data. More...
void	CUser_object_Base::SetType (TType &value)
	Assign a value to Type data member. More...
TType &	CUser_object_Base::SetType (void)
	Assign a value to Type data member. More...
bool	CUser_object_Base::IsSetData (void) const
	the object itself Check if a value has been assigned to Data data member. More...
bool	CUser_object_Base::CanGetData (void) const
	Check if it is safe to call GetData method. More...
void	CUser_object_Base::ResetData (void)
	Reset Data data member. More...
const TData &	CUser_object_Base::GetData (void) const
	Get the Data member data. More...
TData &	CUser_object_Base::SetData (void)
	Assign a value to Data data member. More...
virtual void	CUser_object_Base::Reset (void)
	Reset the whole object. More...
	CUser_object_Base::CUser_object_Base (const CUser_object_Base &)
CUser_object_Base &	CUser_object_Base::operator= (const CUser_object_Base &)

Variables
E_Choice	CDate_Base::m_choice
static const char *const	CDate_Base::sm_SelectionNames []
NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CDate_Base::m_string
NCBI_NS_NCBI::CSerialObject *   CDate_Base::m_object
union {
NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CDate_Base::m_string
NCBI_NS_NCBI::CSerialObject *   CDate_Base::m_object
};
Uint4	CDate_std_Base::m_set_State [1]
int	CDate_std_Base::m_Year
int	CDate_std_Base::m_Month
int	CDate_std_Base::m_Day
string	CDate_std_Base::m_Season
int	CDate_std_Base::m_Hour
int	CDate_std_Base::m_Minute
int	CDate_std_Base::m_Second
Uint4	CDbtag_Base::m_set_State [1]
string	CDbtag_Base::m_Db
CRef< TTag >	CDbtag_Base::m_Tag
Uint4	CInt_fuzz_Base::C_Range::m_set_State [1]
TSeqPos	CInt_fuzz_Base::C_Range::m_Max
TSeqPos	CInt_fuzz_Base::C_Range::m_Min
E_Choice	CInt_fuzz_Base::m_choice
static const char *const	CInt_fuzz_Base::sm_SelectionNames []
TP_m   CInt_fuzz_Base::m_P_m
TPct   CInt_fuzz_Base::m_Pct
TLim   CInt_fuzz_Base::m_Lim
NCBI_NS_NCBI::CUnionBuffer< TAlt >   CInt_fuzz_Base::m_Alt
NCBI_NS_NCBI::CSerialObject *   CInt_fuzz_Base::m_object
union {
TP_m   CInt_fuzz_Base::m_P_m
TPct   CInt_fuzz_Base::m_Pct
TLim   CInt_fuzz_Base::m_Lim
NCBI_NS_NCBI::CUnionBuffer< TAlt >   CInt_fuzz_Base::m_Alt
NCBI_NS_NCBI::CSerialObject *   CInt_fuzz_Base::m_object
};
Uint4	CName_std_Base::m_set_State [1]
string	CName_std_Base::m_Last
string	CName_std_Base::m_First
string	CName_std_Base::m_Middle
string	CName_std_Base::m_Full
string	CName_std_Base::m_Initials
string	CName_std_Base::m_Suffix
string	CName_std_Base::m_Title
E_Choice	CObject_id_Base::m_choice
static const char *const	CObject_id_Base::sm_SelectionNames []
TId   CObject_id_Base::m_Id
NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CObject_id_Base::m_string
void *   CObject_id_Base::m_dummy_pointer_for_alignment
union {
TId   CObject_id_Base::m_Id
NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CObject_id_Base::m_string
void *   CObject_id_Base::m_dummy_pointer_for_alignment
};
E_Choice	CPerson_id_Base::m_choice
static const char *const	CPerson_id_Base::sm_SelectionNames []
NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CPerson_id_Base::m_string
NCBI_NS_NCBI::CSerialObject *   CPerson_id_Base::m_object
union {
NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CPerson_id_Base::m_string
NCBI_NS_NCBI::CSerialObject *   CPerson_id_Base::m_object
};
E_Choice	CUser_field_Base::C_Data::m_choice
static const char *const	CUser_field_Base::C_Data::sm_SelectionNames []
TInt   CUser_field_Base::C_Data::m_Int
TReal   CUser_field_Base::C_Data::m_Real
TBool   CUser_field_Base::C_Data::m_Bool
NCBI_NS_NCBI::CUnionBuffer< TOs >   CUser_field_Base::C_Data::m_Os
NCBI_NS_NCBI::CUnionBuffer< TStrs >   CUser_field_Base::C_Data::m_Strs
NCBI_NS_NCBI::CUnionBuffer< TInts >   CUser_field_Base::C_Data::m_Ints
NCBI_NS_NCBI::CUnionBuffer< TReals >   CUser_field_Base::C_Data::m_Reals
NCBI_NS_NCBI::CUnionBuffer< TOss >   CUser_field_Base::C_Data::m_Oss
NCBI_NS_NCBI::CUnionBuffer< TFields >   CUser_field_Base::C_Data::m_Fields
NCBI_NS_NCBI::CUnionBuffer< TObjects >   CUser_field_Base::C_Data::m_Objects
NCBI_NS_NCBI::CUnionBuffer< CStringUTF8 >   CUser_field_Base::C_Data::m_string_utf8
NCBI_NS_NCBI::CSerialObject *   CUser_field_Base::C_Data::m_object
union {
TInt   CUser_field_Base::C_Data::m_Int
TReal   CUser_field_Base::C_Data::m_Real
TBool   CUser_field_Base::C_Data::m_Bool
NCBI_NS_NCBI::CUnionBuffer< TOs >   CUser_field_Base::C_Data::m_Os
NCBI_NS_NCBI::CUnionBuffer< TStrs >   CUser_field_Base::C_Data::m_Strs
NCBI_NS_NCBI::CUnionBuffer< TInts >   CUser_field_Base::C_Data::m_Ints
NCBI_NS_NCBI::CUnionBuffer< TReals >   CUser_field_Base::C_Data::m_Reals
NCBI_NS_NCBI::CUnionBuffer< TOss >   CUser_field_Base::C_Data::m_Oss
NCBI_NS_NCBI::CUnionBuffer< TFields >   CUser_field_Base::C_Data::m_Fields
NCBI_NS_NCBI::CUnionBuffer< TObjects >   CUser_field_Base::C_Data::m_Objects
NCBI_NS_NCBI::CUnionBuffer< CStringUTF8 >   CUser_field_Base::C_Data::m_string_utf8
NCBI_NS_NCBI::CSerialObject *   CUser_field_Base::C_Data::m_object
};
Uint4	CUser_field_Base::m_set_State [1]
CRef< TLabel >	CUser_field_Base::m_Label
int	CUser_field_Base::m_Num
CRef< TData >	CUser_field_Base::m_Data
Uint4	CUser_object_Base::m_set_State [1]
string	CUser_object_Base::m_Class
CRef< TType >	CUser_object_Base::m_Type
vector< CRef< CUser_field > >	CUser_object_Base::m_Data

Detailed Description

Typedef Documentation

TAlt

typedef list< TSeqPos > CInt_fuzz_Base::TAlt

Definition at line 289 of file Int_fuzz_.hpp.

TBool

typedef bool CUser_field_Base::C_Data::TBool

Definition at line 182 of file User_field_.hpp.

TClass

typedef string CUser_object_Base::TClass

Definition at line 95 of file User_object_.hpp.

TConsortium

typedef string CPerson_id_Base::TConsortium

Definition at line 158 of file Person_id_.hpp.

TData [1/2]

typedef C_Data CUser_field_Base::TData

Definition at line 506 of file User_field_.hpp.

TData [2/2]

typedef vector< CRef< CUser_field > > CUser_object_Base::TData

Definition at line 97 of file User_object_.hpp.

TDay

typedef int CDate_std_Base::TDay

Definition at line 88 of file Date_std_.hpp.

TDb

typedef string CDbtag_Base::TDb

Definition at line 92 of file Dbtag_.hpp.

TDbtag

typedef CDbtag CPerson_id_Base::TDbtag

Definition at line 154 of file Person_id_.hpp.

TFields

typedef vector< CRef< CUser_field > > CUser_field_Base::C_Data::TFields

Definition at line 189 of file User_field_.hpp.

TFirst

typedef string CName_std_Base::TFirst

Definition at line 87 of file Name_std_.hpp.

TFull

typedef string CName_std_Base::TFull

Definition at line 89 of file Name_std_.hpp.

THour

typedef int CDate_std_Base::THour

Definition at line 90 of file Date_std_.hpp.

TId

typedef int CObject_id_Base::TId

Definition at line 146 of file Object_id_.hpp.

TInitials

typedef string CName_std_Base::TInitials

Definition at line 90 of file Name_std_.hpp.

TInt

typedef int CUser_field_Base::C_Data::TInt

Definition at line 180 of file User_field_.hpp.

TInts

typedef vector< int > CUser_field_Base::C_Data::TInts

Definition at line 186 of file User_field_.hpp.

TLabel

typedef CObject_id CUser_field_Base::TLabel

Definition at line 504 of file User_field_.hpp.

TLast

typedef string CName_std_Base::TLast

Definition at line 86 of file Name_std_.hpp.

TLim

typedef ELim CInt_fuzz_Base::TLim

Definition at line 288 of file Int_fuzz_.hpp.

TMax

typedef TSeqPos CInt_fuzz_Base::C_Range::TMax

Definition at line 106 of file Int_fuzz_.hpp.

TmemberIndex [1/6]

typedef Tparent::CMemberIndex<E_memberIndex, 8> CDate_std_Base::TmemberIndex

Definition at line 105 of file Date_std_.hpp.

TmemberIndex [2/6]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CDbtag_Base::TmemberIndex

Definition at line 101 of file Dbtag_.hpp.

TmemberIndex [3/6]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CInt_fuzz_Base::C_Range::TmemberIndex

Definition at line 115 of file Int_fuzz_.hpp.

TmemberIndex [4/6]

typedef Tparent::CMemberIndex<E_memberIndex, 8> CName_std_Base::TmemberIndex

Definition at line 105 of file Name_std_.hpp.

TmemberIndex [5/6]

typedef Tparent::CMemberIndex<E_memberIndex, 4> CUser_field_Base::TmemberIndex

Definition at line 515 of file User_field_.hpp.

TmemberIndex [6/6]

typedef Tparent::CMemberIndex<E_memberIndex, 4> CUser_object_Base::TmemberIndex

Definition at line 106 of file User_object_.hpp.

TMiddle

typedef string CName_std_Base::TMiddle

Definition at line 88 of file Name_std_.hpp.

TMin

typedef TSeqPos CInt_fuzz_Base::C_Range::TMin

Definition at line 107 of file Int_fuzz_.hpp.

TMinute

typedef int CDate_std_Base::TMinute

Definition at line 91 of file Date_std_.hpp.

TMl

typedef string CPerson_id_Base::TMl

Definition at line 156 of file Person_id_.hpp.

TMonth

typedef int CDate_std_Base::TMonth

Definition at line 87 of file Date_std_.hpp.

TName

typedef CName_std CPerson_id_Base::TName

Definition at line 155 of file Person_id_.hpp.

TNum

typedef int CUser_field_Base::TNum

Definition at line 505 of file User_field_.hpp.

TObject

typedef CUser_object CUser_field_Base::C_Data::TObject

Definition at line 184 of file User_field_.hpp.

TObjects

typedef vector< CRef< CUser_object > > CUser_field_Base::C_Data::TObjects

Definition at line 190 of file User_field_.hpp.

TOs

typedef vector< char > CUser_field_Base::C_Data::TOs

Definition at line 183 of file User_field_.hpp.

TOss

typedef vector< vector< char >* > CUser_field_Base::C_Data::TOss

Definition at line 188 of file User_field_.hpp.

TP_m

typedef TSeqPos CInt_fuzz_Base::TP_m

Definition at line 285 of file Int_fuzz_.hpp.

Tparent [1/11]

typedef CSerialObject CDate_Base::Tparent

private

Definition at line 114 of file Date_.hpp.

Tparent [2/11]

typedef CSerialObject CDate_std_Base::Tparent

private

Definition at line 75 of file Date_std_.hpp.

Tparent [3/11]

typedef CSerialObject CDbtag_Base::Tparent

private

Definition at line 81 of file Dbtag_.hpp.

Tparent [4/11]

typedef CSerialObject CInt_fuzz_Base::Tparent

private

Definition at line 77 of file Int_fuzz_.hpp.

Tparent [5/11]

typedef CSerialObject CInt_fuzz_Base::C_Range::Tparent

private

Definition at line 95 of file Int_fuzz_.hpp.

Tparent [6/11]

typedef CSerialObject CName_std_Base::Tparent

private

Definition at line 75 of file Name_std_.hpp.

Tparent [7/11]

typedef CSerialObject CObject_id_Base::Tparent

private

Definition at line 76 of file Object_id_.hpp.

Tparent [8/11]

typedef CSerialObject CPerson_id_Base::Tparent

private

Definition at line 81 of file Person_id_.hpp.

Tparent [9/11]

typedef CSerialObject CUser_field_Base::Tparent

private

Definition at line 81 of file User_field_.hpp.

Tparent [10/11]

typedef CSerialObject CUser_field_Base::C_Data::Tparent

private

Definition at line 99 of file User_field_.hpp.

Tparent [11/11]

typedef CSerialObject CUser_object_Base::Tparent

private

Definition at line 84 of file User_object_.hpp.

TPct

typedef int CInt_fuzz_Base::TPct

Definition at line 287 of file Int_fuzz_.hpp.

TRange

typedef C_Range CInt_fuzz_Base::TRange

Definition at line 286 of file Int_fuzz_.hpp.

TReal

typedef double CUser_field_Base::C_Data::TReal

Definition at line 181 of file User_field_.hpp.

TReals

typedef vector< double > CUser_field_Base::C_Data::TReals

Definition at line 187 of file User_field_.hpp.

TSeason

typedef string CDate_std_Base::TSeason

Definition at line 89 of file Date_std_.hpp.

TSecond

typedef int CDate_std_Base::TSecond

Definition at line 92 of file Date_std_.hpp.

TStd

typedef CDate_std CDate_Base::TStd

Definition at line 185 of file Date_.hpp.

TStr [1/4]

typedef string CDate_Base::TStr

Definition at line 184 of file Date_.hpp.

TStr [2/4]

typedef string CObject_id_Base::TStr

Definition at line 147 of file Object_id_.hpp.

TStr [3/4]

typedef string CPerson_id_Base::TStr

Definition at line 157 of file Person_id_.hpp.

TStr [4/4]

typedef CStringUTF8 CUser_field_Base::C_Data::TStr

Definition at line 179 of file User_field_.hpp.

TStrs

typedef vector< CStringUTF8 > CUser_field_Base::C_Data::TStrs

Definition at line 185 of file User_field_.hpp.

TSuffix

typedef string CName_std_Base::TSuffix

Definition at line 91 of file Name_std_.hpp.

TTag

typedef CObject_id CDbtag_Base::TTag

Definition at line 93 of file Dbtag_.hpp.

TTitle

typedef string CName_std_Base::TTitle

Definition at line 92 of file Name_std_.hpp.

TType

typedef CObject_id CUser_object_Base::TType

Definition at line 96 of file User_object_.hpp.

TYear

typedef int CDate_std_Base::TYear

Definition at line 86 of file Date_std_.hpp.

Enumeration Type Documentation

E_Choice [1/5]

enum CDate_Base::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Str	for those unparsed dates
e_Std	use this if you can

Definition at line 126 of file Date_.hpp.

E_Choice [2/5]

enum CInt_fuzz_Base::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_P_m	plus or minus fixed amount
e_Range
e_Pct	% plus or minus (x10) 0-1000
e_Lim
e_Alt	set of alternatives for the integer

Definition at line 224 of file Int_fuzz_.hpp.

E_Choice [3/5]

enum CObject_id_Base::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Id
e_Str

Definition at line 88 of file Object_id_.hpp.

E_Choice [4/5]

enum CPerson_id_Base::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Dbtag	any defined database tag
e_Name	structured name
e_Ml	MEDLINE name (semi-structured) eg. "Jones RM".
e_Str	unstructured name
e_Consortium	consortium name

Definition at line 93 of file Person_id_.hpp.

E_Choice [5/5]

enum CUser_field_Base::C_Data::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Str
e_Int
e_Real
e_Bool
e_Os
e_Object	for using other definitions
e_Strs
e_Ints
e_Reals
e_Oss
e_Fields
e_Objects

Definition at line 111 of file User_field_.hpp.

E_ChoiceStopper [1/5]

enum CDate_Base::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Std+1

Definition at line 132 of file Date_.hpp.

E_ChoiceStopper [2/5]

enum CInt_fuzz_Base::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Alt+1

Definition at line 233 of file Int_fuzz_.hpp.

E_ChoiceStopper [3/5]

enum CObject_id_Base::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Str+1

Definition at line 94 of file Object_id_.hpp.

E_ChoiceStopper [4/5]

enum CPerson_id_Base::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Consortium+1

Definition at line 102 of file Person_id_.hpp.

E_ChoiceStopper [5/5]

enum CUser_field_Base::C_Data::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Objects+1

Definition at line 127 of file User_field_.hpp.

E_memberIndex [1/6]

enum CDate_std_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_year
e_month
e_day
e_season
e_hour
e_minute
e_second

Definition at line 95 of file Date_std_.hpp.

E_memberIndex [2/6]

enum CDbtag_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_db
e_tag

Definition at line 96 of file Dbtag_.hpp.

E_memberIndex [3/6]

enum CInt_fuzz_Base::C_Range::E_memberIndex

strong

Enumerator
e__allMandatory
e_max
e_min

Definition at line 110 of file Int_fuzz_.hpp.

E_memberIndex [4/6]

enum CName_std_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_last
e_first
e_middle
e_full
e_initials
e_suffix
e_title

Definition at line 95 of file Name_std_.hpp.

E_memberIndex [5/6]

enum CUser_field_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_label
e_num
e_data

Definition at line 509 of file User_field_.hpp.

E_memberIndex [6/6]

enum CUser_object_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_class
e_type
e_data

Definition at line 100 of file User_object_.hpp.

ELim

enum CInt_fuzz_Base::ELim

some limit value

Enumerator
eLim_unk	unknown
eLim_gt	greater than
eLim_lt	less than
eLim_tr	space to right of position
eLim_tl	space to left of position
eLim_circle	artificial break at origin of circle
eLim_other	something else

Definition at line 209 of file Int_fuzz_.hpp.

Function Documentation

C_Data() [1/2]

CUser_field_Base::C_Data::C_Data ( const C_Data &  )

private

C_Data() [2/2]

END_CHOICE_INFO CUser_field_Base::C_Data::C_Data

(

void

)

Definition at line 223 of file User_field_.cpp.

C_Range() [1/2]

CInt_fuzz_Base::C_Range::C_Range ( const C_Range &  )

private

C_Range() [2/2]

END_CLASS_INFO CInt_fuzz_Base::C_Range::C_Range

(

void

)

Definition at line 69 of file Int_fuzz_.cpp.

References CInt_fuzz_Base::C_Range::m_set_State.

CanGetClass()

bool CUser_object_Base::CanGetClass ( void  ) const

inline

Check if it is safe to call GetClass method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 252 of file User_object_.hpp.

References CUser_object_Base::IsSetClass().

Referenced by CUser_object_Base::GetClass(), CDiscrepancyObject::GetTextObjectDescription(), and GetTextObjectDescription().

CanGetData() [1/2]

bool CUser_field_Base::CanGetData ( void  ) const

inline

Check if it is safe to call GetData method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1018 of file User_field_.hpp.

Referenced by CSnpBitfieldFactory::CreateBitfield(), CSnpBitfield2::CSnpBitfield2(), CFlatModelEvQVal::Format(), CWndLayoutReg::GetDefaultLayout(), CGenomeAnnotComment::GetGenomeBuildNumber(), CWndLayoutReg::GetLayout(), CCommentItem::GetStringForBankIt(), CWriteUtil::GetStringForModelEvidence(), CCommentItem::GetStringForTPA(), CGuiObjectInfoVariation::GetToolTip(), s_CountAccessions(), s_FindModelEvidanceUop(), CBedWriter::WriteAnnot(), CSNPSearchJob::x_DoSearch(), CGenomeProjectItem::x_GatherInfo(), and CAlignmentSmear::x_GetAnnotName().

CanGetData() [2/2]

bool CUser_object_Base::CanGetData ( void  ) const

inline

Check if it is safe to call GetData method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 329 of file User_object_.hpp.

Referenced by CWriteDB_Impl::x_GetBioseqBinaryHeader(), CWriteDB_Impl::x_GetFastaReaderDeflines(), and CWiggleWriter::xWriteTrackLine().

CanGetDay()

bool CDate_std_Base::CanGetDay ( void  ) const

inline

Check if it is safe to call GetDay method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 507 of file Date_std_.hpp.

References CDate_std_Base::IsSetDay().

Referenced by CDate_std::AsCTime(), CDate_std::Compare(), CDate_std::GetDate(), and CDate_std_Base::GetDay().

CanGetDb()

bool CDbtag_Base::CanGetDb ( void  ) const

inline

Check if it is safe to call GetDb method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 214 of file Dbtag_.hpp.

References CDbtag_Base::IsSetDb().

Referenced by ExtractGnomonModelNum(), CDbtag_Base::GetDb(), CDbtag::GetDBFlags(), CVDBBlastUtil::GetOIDFromVDBSeqId(), CDbtag::GetType(), CDbtag::IsApproved(), CDbtag::IsApprovedNoCase(), IsStringId(), Normalize(), s_GetSRASeqMetadata(), SeqDB_SimplifySeqid(), CSeqDBImpl::SeqidToOids(), CCommentItem::x_GatherDescInfo(), and CReferenceItem::x_Init().

CanGetFirst()

bool CName_std_Base::CanGetFirst ( void  ) const

inline

Check if it is safe to call GetFirst method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 463 of file Name_std_.hpp.

References CName_std_Base::IsSetFirst().

Referenced by CName_std_Base::GetFirst().

CanGetFull()

bool CName_std_Base::CanGetFull ( void  ) const

inline

Check if it is safe to call GetFull method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 557 of file Name_std_.hpp.

References CName_std_Base::IsSetFull().

Referenced by CName_std_Base::GetFull().

CanGetHour()

bool CDate_std_Base::CanGetHour ( void  ) const

inline

Check if it is safe to call GetHour method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 601 of file Date_std_.hpp.

References CDate_std_Base::IsSetHour().

Referenced by CDate_std::AsCTime(), CDate_std::Compare(), CDate_std::GetDate(), and CDate_std_Base::GetHour().

CanGetInitials()

bool CName_std_Base::CanGetInitials ( void  ) const

inline

Check if it is safe to call GetInitials method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 604 of file Name_std_.hpp.

References CName_std_Base::IsSetInitials().

Referenced by CName_std_Base::GetInitials(), and CAuthor::GetLabelV2().

CanGetLabel()

bool CUser_field_Base::CanGetLabel ( void  ) const

inline

Check if it is safe to call GetLabel method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 941 of file User_field_.hpp.

Referenced by CModifyStructuredComment::ApplyToUserObject(), CStructCommentSubpanel::GetLabelsFromSeq(), s_GetAssemblyInfo(), and CAlignmentSmear::x_GetAnnotName().

CanGetLast()

bool CName_std_Base::CanGetLast ( void  ) const

inline

Check if it is safe to call GetLast method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 416 of file Name_std_.hpp.

References CName_std_Base::IsSetLast().

Referenced by CName_std_Base::GetLast().

CanGetMax()

bool CInt_fuzz_Base::C_Range::CanGetMax ( void  ) const

inline

Check if it is safe to call GetMax method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 459 of file Int_fuzz_.hpp.

CanGetMiddle()

bool CName_std_Base::CanGetMiddle ( void  ) const

inline

Check if it is safe to call GetMiddle method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 510 of file Name_std_.hpp.

References CName_std_Base::IsSetMiddle().

Referenced by CName_std_Base::GetMiddle().

CanGetMin()

bool CInt_fuzz_Base::C_Range::CanGetMin ( void  ) const

inline

Check if it is safe to call GetMin method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 506 of file Int_fuzz_.hpp.

CanGetMinute()

bool CDate_std_Base::CanGetMinute ( void  ) const

inline

Check if it is safe to call GetMinute method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 648 of file Date_std_.hpp.

References CDate_std_Base::IsSetMinute().

Referenced by CDate_std::AsCTime(), CDate_std::Compare(), CDate_std::GetDate(), and CDate_std_Base::GetMinute().

CanGetMonth()

bool CDate_std_Base::CanGetMonth ( void  ) const

inline

Check if it is safe to call GetMonth method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 460 of file Date_std_.hpp.

References CDate_std_Base::IsSetMonth().

Referenced by CDate_std::AsCTime(), CDate_std::Compare(), CDate_std::GetDate(), and CDate_std_Base::GetMonth().

CanGetNum()

bool CUser_field_Base::CanGetNum ( void  ) const

inline

Check if it is safe to call GetNum method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 971 of file User_field_.hpp.

References CUser_field_Base::IsSetNum().

Referenced by CollectUserField(), and CUser_field_Base::GetNum().

CanGetSeason()

bool CDate_std_Base::CanGetSeason ( void  ) const

inline

Check if it is safe to call GetSeason method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 554 of file Date_std_.hpp.

References CDate_std_Base::IsSetSeason().

Referenced by CDate_std::Compare(), CDate_std::GetDate(), and CDate_std_Base::GetSeason().

CanGetSecond()

bool CDate_std_Base::CanGetSecond ( void  ) const

inline

Check if it is safe to call GetSecond method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 695 of file Date_std_.hpp.

References CDate_std_Base::IsSetSecond().

Referenced by CDate_std::AsCTime(), CDate_std::Compare(), CDate_std::GetDate(), and CDate_std_Base::GetSecond().

CanGetSuffix()

bool CName_std_Base::CanGetSuffix ( void  ) const

inline

Check if it is safe to call GetSuffix method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 651 of file Name_std_.hpp.

References CName_std_Base::IsSetSuffix().

Referenced by CAuthor::GetLabelV2(), and CName_std_Base::GetSuffix().

CanGetTag()

bool CDbtag_Base::CanGetTag ( void  ) const

inline

Check if it is safe to call GetTag method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 261 of file Dbtag_.hpp.

Referenced by CVDBBlastUtil::GetOIDFromVDBSeqId(), s_GetSRASeqMetadata(), SeqDB_SimplifySeqid(), CWriteDB_IsamIndex::x_AddStringIds(), CCommentItem::x_GatherDescInfo(), and CVcfWriter::x_WriteFeatureInfo().

CanGetTitle()

bool CName_std_Base::CanGetTitle ( void  ) const

inline

Check if it is safe to call GetTitle method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 698 of file Name_std_.hpp.

References CName_std_Base::IsSetTitle().

Referenced by CName_std_Base::GetTitle().

CanGetType()

bool CUser_object_Base::CanGetType ( void  ) const

inline

Check if it is safe to call GetType method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 299 of file User_object_.hpp.

Referenced by GetSegSetDblink(), CCommentItem::GetStringForBankIt(), CCommentItem::GetStringForTPA(), CPhyTreeView::OnSomethingEdited(), CChangePhyloSelectionSetCmd::PerformEdit(), s_HasTpaUserObject(), s_IsModelEvidanceUop(), CValidError_desc::ValidateUser(), CPrimaryItem::x_GatherInfo(), CAlignmentSmear::x_GetAnnotName(), CWriteDB_Impl::x_GetFastaReaderDeflines(), CCommonComponentScorer::x_GetUserCompList(), and CWiggleWriter::xWriteTrackLine().

CanGetYear()

bool CDate_std_Base::CanGetYear ( void  ) const

inline

Check if it is safe to call GetYear method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 413 of file Date_std_.hpp.

References CDate_std_Base::IsSetYear().

Referenced by CDate_std_Base::GetYear().

CDate_Base() [1/2]

CDate_Base::CDate_Base ( const CDate_Base &  )

private

CDate_Base() [2/2]

END_CHOICE_INFO CDate_Base::CDate_Base

(

void

)

Definition at line 145 of file Date_.cpp.

CDate_std_Base() [1/2]

CDate_std_Base::CDate_std_Base ( const CDate_std_Base &  )

private

CDate_std_Base() [2/2]

END_CLASS_INFO CDate_std_Base::CDate_std_Base

(

void

)

Definition at line 84 of file Date_std_.cpp.

References CDate_std_Base::m_set_State.

CDbtag_Base() [1/2]

CDbtag_Base::CDbtag_Base ( const CDbtag_Base &  )

private

CDbtag_Base() [2/2]

END_CLASS_INFO CDbtag_Base::CDbtag_Base

(

void

)

Definition at line 89 of file Dbtag_.cpp.

References CObject::IsAllocatedInPool(), CDbtag_Base::m_set_State, and CDbtag_Base::ResetTag().

CheckSelected() [1/5]

void CDate_Base::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 277 of file Date_.hpp.

References CDate_Base::m_choice, and CDate_Base::ThrowInvalidSelection().

Referenced by CDate_Base::GetStd(), and CDate_Base::GetStr().

CheckSelected() [2/5]

void CInt_fuzz_Base::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 553 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::m_choice, and CInt_fuzz_Base::ThrowInvalidSelection().

Referenced by CInt_fuzz_Base::GetAlt(), CInt_fuzz_Base::GetLim(), CInt_fuzz_Base::GetP_m(), CInt_fuzz_Base::GetPct(), and CInt_fuzz_Base::GetRange().

CheckSelected() [3/5]

void CObject_id_Base::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 241 of file Object_id_.hpp.

References CObject_id_Base::m_choice, and CObject_id_Base::ThrowInvalidSelection().

Referenced by CObject_id_Base::GetId(), and CObject_id_Base::GetStr().

CheckSelected() [4/5]

void CPerson_id_Base::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 330 of file Person_id_.hpp.

References CPerson_id_Base::m_choice, and CPerson_id_Base::ThrowInvalidSelection().

Referenced by CPerson_id_Base::GetConsortium(), CPerson_id_Base::GetDbtag(), CPerson_id_Base::GetMl(), CPerson_id_Base::GetName(), and CPerson_id_Base::GetStr().

CheckSelected() [5/5]

void CUser_field_Base::C_Data::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 665 of file User_field_.hpp.

CInt_fuzz_Base() [1/2]

CInt_fuzz_Base::CInt_fuzz_Base ( const CInt_fuzz_Base &  )

private

CInt_fuzz_Base() [2/2]

END_CHOICE_INFO CInt_fuzz_Base::CInt_fuzz_Base

(

void

)

Definition at line 198 of file Int_fuzz_.cpp.

CName_std_Base() [1/2]

CName_std_Base::CName_std_Base ( const CName_std_Base &  )

private

CName_std_Base() [2/2]

END_CLASS_INFO CName_std_Base::CName_std_Base

(

void

)

Definition at line 120 of file Name_std_.cpp.

References CName_std_Base::m_set_State.

CObject_id_Base() [1/2]

CObject_id_Base::CObject_id_Base ( const CObject_id_Base &  )

private

CObject_id_Base() [2/2]

END_CHOICE_INFO CObject_id_Base::CObject_id_Base

(

void

)

Definition at line 119 of file Object_id_.cpp.

CPerson_id_Base() [1/2]

CPerson_id_Base::CPerson_id_Base ( const CPerson_id_Base &  )

private

CPerson_id_Base() [2/2]

END_CHOICE_INFO CPerson_id_Base::CPerson_id_Base

(

void

)

Definition at line 194 of file Person_id_.cpp.

CUser_field_Base() [1/2]

CUser_field_Base::CUser_field_Base ( const CUser_field_Base &  )

private

CUser_field_Base() [2/2]

END_CLASS_INFO CUser_field_Base::CUser_field_Base

(

void

)

Definition at line 283 of file User_field_.cpp.

References CObject::IsAllocatedInPool(), CUser_field_Base::m_set_State, CUser_field_Base::ResetData(), and CUser_field_Base::ResetLabel().

CUser_object_Base() [1/2]

CUser_object_Base::CUser_object_Base ( const CUser_object_Base &  )

private

CUser_object_Base() [2/2]

END_CLASS_INFO CUser_object_Base::CUser_object_Base

(

void

)

Definition at line 98 of file User_object_.cpp.

References CObject::IsAllocatedInPool(), CUser_object_Base::m_set_State, and CUser_object_Base::ResetType().

DECLARE_INTERNAL_TYPE_INFO() [1/11]

CDate_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [2/11]

CDate_std_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [3/11]

CDbtag_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [4/11]

CInt_fuzz_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [5/11]

CInt_fuzz_Base::C_Range::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [6/11]

CName_std_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [7/11]

CObject_id_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [8/11]

CPerson_id_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [9/11]

CUser_field_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [10/11]

CUser_field_Base::C_Data::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [11/11]

CUser_object_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DoSelect() [1/5]

void CDate_Base::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 72 of file Date_.cpp.

References CObject::AddReference(), CDate_Base::e_Std, CDate_Base::e_Str, CDate_Base::m_choice, CDate_Base::m_object, and CDate_Base::m_string.

DoSelect() [2/5]

void CInt_fuzz_Base::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 116 of file Int_fuzz_.cpp.

References CObject::AddReference(), CInt_fuzz_Base::e_Alt, CInt_fuzz_Base::e_Lim, CInt_fuzz_Base::e_P_m, CInt_fuzz_Base::e_Pct, CInt_fuzz_Base::e_Range, CInt_fuzz_Base::m_Alt, CInt_fuzz_Base::m_choice, CInt_fuzz_Base::m_Lim, CInt_fuzz_Base::m_object, CInt_fuzz_Base::m_P_m, and CInt_fuzz_Base::m_Pct.

DoSelect() [3/5]

void CObject_id_Base::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 68 of file Object_id_.cpp.

References CObject_id_Base::e_Id, CObject_id_Base::e_Str, CObject_id_Base::m_choice, CObject_id_Base::m_Id, and CObject_id_Base::m_string.

DoSelect() [4/5]

void CPerson_id_Base::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 76 of file Person_id_.cpp.

References CObject::AddReference(), CPerson_id_Base::e_Consortium, CPerson_id_Base::e_Dbtag, CPerson_id_Base::e_Ml, CPerson_id_Base::e_Name, CPerson_id_Base::e_Str, CPerson_id_Base::m_choice, CPerson_id_Base::m_object, and CPerson_id_Base::m_string.

DoSelect() [5/5]

void CUser_field_Base::C_Data::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 99 of file User_field_.cpp.

References CObject::AddReference().

ELim()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CInt_fuzz_Base::ELim ( void  )

static

Access to ELim's attributes (values, names) as defined in spec.

GetAlt()

const CInt_fuzz_Base::TAlt & CInt_fuzz_Base::GetAlt ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 669 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::CheckSelected(), CInt_fuzz_Base::e_Alt, and CInt_fuzz_Base::m_Alt.

Referenced by CInt_fuzz::AssignTranslated(), CRangeWithFuzz::x_AddFuzz(), x_Assign(), and CMappingRange::x_Map_Fuzz().

GetBool()

CUser_field_Base::C_Data::TBool CUser_field_Base::C_Data::GetBool ( void  ) const

inline

Get the variant data.

Returns

Copy of the variant data.

Definition at line 768 of file User_field_.hpp.

Referenced by CLBLASTObjectLoader::AddDataLoader(), CDockLayoutTree::CNode::FromUserObject(), CComplexRelation::FromUserObject(), CBLASTParams::FromUserObject(), CSettingsSet::GetBool(), CUser_field::GetBool(), CUserFeatHandler::GetLabel(), CLBLASTObjectLoader::GetLoaderName(), CUser_object::GetRefGeneTrackingGenerated(), CPhyloSelectionSet::InitFromUserObject(), CPhyTreeView::InitView(), CTableDelimiterRules::LoadAsn(), CTableImportColumn::LoadAsn(), CDemoSeqQaApp::Run(), s_IsMatchById(), s_ScanRecursive(), sWindowPosFromUserObject(), CClonePlacementGlyph::x_Draw(), CBLASTParams::x_FromUserObject(), CAlignmentSmear::x_GetAnnotName(), and CClonePlacementGlyph::x_GetCloneEnds().

GetClass()

const CUser_object_Base::TClass & CUser_object_Base::GetClass ( void  ) const

inline

Get the Class member data.

Returns

Reference to the member data.

Definition at line 258 of file User_object_.hpp.

References CUser_object_Base::CanGetClass(), CUser_object_Base::m_Class, and CSerialObject::ThrowUnassigned().

Referenced by CRemoveDuplicateStructuredComment::ApplyToUserObject(), CUser_object::GetCategory(), CValidErrorFormat::GetDescriptorContent(), CUserFeatHandler::GetLabel(), CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), CBankITCommentField::GetVals(), RestoreModelAttributes(), and s_GetContentLabel().

GetConsortium()

const CPerson_id_Base::TConsortium & CPerson_id_Base::GetConsortium ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 411 of file Person_id_.hpp.

References CPerson_id_Base::CheckSelected(), CPerson_id_Base::e_Consortium, and CPerson_id_Base::m_string.

Referenced by fix_pub::ExtractConsortiums(), CPubField::GetAuthorField(), GetAuthorString(), CPerson_id::GetLabel(), CAuthor::GetLabelV2(), CEditingActionDescAuthorConsortium::GetValue(), HasAuthor(), CValidError_imp::HasName(), CAuthorNamesPanel::IsAuthorEmpty(), SAuthorEmpty::operator()(), fix_pub::PrintPub(), CFindASN1Dlg::ReplaceInAuthor(), s_GetAuthorMatchString(), CPubField::SetAuthorField(), CReferenceItem::x_AddAuthors(), and CSrcWriter::xGather().

GetData() [1/2]

const CUser_field_Base::TData & CUser_field_Base::GetData ( void  ) const

inline

Get the Data member data.

Returns

Reference to the member data.

Definition at line 1024 of file User_field_.hpp.

References CUser_field_Base::m_Data, and CUser_field_Base::ResetData().

Referenced by CLBLASTObjectLoader::AddDataLoader(), CTableAnnotDataSource::AddSeqLoc(), CTableAnnotDataSource::AddSnpSeqLoc(), CChangeStructuredCommentKeyword::ApplyToCSeq_entry_user(), CReorderStructuredComment::ApplyToCSeq_entry_user(), CRemoveEmptyGenomeProjectsDB::ApplyToUserObject(), CRemoveDuplicateStructuredComment::ApplyToUserObject(), CGvfWriteRecord::AssignSource(), CGvfWriteRecord::AssignType(), BOOST_AUTO_TEST_CASE(), BOOST_AUTO_TEST_SUITE_END(), CComment_rule::CheckFieldValue(), CComment_rule::CheckGeneralField(), CLDBlockGlyph::CLDBlockGlyph(), ClearGoTermValue(), CollectUserField(), CSnpBitfieldFactory::CreateBitfield(), CTableAnnotDataSource::CreateFeature(), CTableAnnotDataSource::CreateSnpFeature(), CTableAnnotDataSource::CreateSnps(), CSnpBitfield2::CSnpBitfield2(), CUser_field::DeleteField(), CSequenceEditingEventHandler::DeleteSpecificStructuredComment(), CGBDocument::DetachDataLoader(), CTableAnnotDataSource::FindLocations(), CFlatModelEvQVal::Format(), CFlatGoQVal::Format(), CRegistryFile::FromConfigFile(), CDockContainerDescr::FromUserObject(), CDockLayoutTree::CNode::FromUserObject(), CComplexRelation::FromUserObject(), CBLASTParams::FromUserObject(), CNewCleanup_imp::GeneFeatBC(), CSeqUtils::GetAnnotShown(), CSettingsSet::GetBool(), CUser_field::GetBool(), CUser_object::GetCategory(), CConstSageData::GetCount(), GetDBLinkIDs(), CWndLayoutReg::GetDefaultLayout(), CUser_field::GetDouble(), CUser_object::GetExperimentType(), CSGUtils::GetFeatFetchDepth(), CBioseq_Info::GetFeatureFetchPolicy(), CUser_field::GetFieldRef(), CUser_field::GetFieldsMap(), GetFieldValueAsString(), CGenomeAnnotComment::GetGenomeBuildNumber(), GetHasFrameShift(), GetHasOrderAssignment(), GetIdField(), CSettingsSet::GetInt(), CUser_field::GetInt(), CUser_field::GetInt8(), CSettingsSet::GetIntVec(), CClonePlacementGlyph::GetLabel(), CUserFeatHandler::GetLabel(), CWndLayoutReg::GetLayout(), NSnp::GetLength(), CLBLASTObjectLoader::GetLoaderName(), CAnnotObject_Info::GetLocsTypes(), GetLowTrace(), CGC_Replicon::GetMoleculeLabel(), CGC_Replicon::GetMoleculeLocation(), CGC_Replicon::GetMoleculeType(), CSeq_annot_SplitInfo::GetName(), GetPrefixOrSuffixType(), CProductStringBuilder::GetProductString(), CFlatGoQVal::GetPubmedId(), CSettingsSet::GetReal(), CSettingsSet::GetRealVec(), CUser_object::GetRefGeneTrackingAssembly(), CUser_object::GetRefGeneTrackingGenerated(), CUser_object::GetRefGeneTrackingIdenticalTo(), CUser_object::GetRefGeneTrackingStatus(), CCommentItem::GetRefTrackStatus(), CBlastQuerySourceBioseqSet::GetSegmentInfo(), CSGSeqGraphJob::GetSeqtableAnnots(), CSettingsSet::GetString(), CUser_field::GetString(), CCommentItem::GetStringForBankIt(), CWriteUtil::GetStringForModelEvidence(), CCommentItem::GetStringForRefSeqGenome(), CCommentItem::GetStringForRefTrack(), CCommentItem::GetStringForTLS(), CCommentItem::GetStringForTPA(), CCommentItem::GetStringForTSA(), CCommentItem::GetStringForWGS(), CSettingsSet::GetStringVec(), CConstSageData::GetTag(), CFlatGoQVal::GetTextString(), CSequenceTrack::GetTooltip(), CGuiObjectInfoSeq_align::GetToolTip(), CGuiObjectInfoPrimer::GetToolTip(), CGuiObjectInfoVariant::GetToolTip(), CGuiObjectInfoVariation::GetToolTip(), CReadUtil::GetTrackValue(), CWriteUtil::GetUserObjectByType(), CBankITCommentField::GetVals(), CLocalIDField::GetVals(), CEditingActionDescGenomeProjectId::GetValue(), CEditingActionDescStructCommDbName::GetValue(), CGBProjectHandle::GetViewSettings(), CTableImportDataSource::ImportTableParms(), CSeqTableReader::Init(), CPhyloSelectionSetMgr::InitFromUserObject(), CPhyloSelectionSet::InitFromUserObject(), CTreeLabel::InitializeFromUserObject(), CPhyTreeView::InitView(), CDiscrepancyContext::IsBGPipe(), CIntronGlyph::IsConsensus(), CLocalIDField::IsEmpty(), CVariationNormalization::isFullyShifted(), IsMatchingIdMissing(), CComment_rule::IsValid(), CTableDelimiterRules::LoadAsn(), CTableImportColumn::LoadAsn(), CTestApplication::LoadTable(), CUser_object::CRefGeneTrackingAccession::MakeAccessionFromUserField(), MakeCompartments(), CEditingActionDescUserObject::Modify(), CEditingActionDescLocalId::Modify(), CEditingActionDescComment::Modify(), CPhyTreeView::OnBioTreeChanged(), CPhyTreeView::OnSomethingEdited(), SSNP_Info::ParseSeq_feat(), CTabularFormatter_AssemblyInfo::Print(), CDUpdater::reformatBioseq(), CRelation::RelationFromUserObject(), CRegistryReadView::ResolveField(), RestoreModelAttributes(), RestoreModelMethod(), CDemoSeqQaApp::Run(), s_AddNewDBlinkValue(), s_AddNewUserField(), CCleanup::s_AddNumToUserField(), s_CheckTraceMateAlign(), CCleanup::s_CleanupGeneOntology(), CCleanup::s_CleanupGenomeAssembly(), CCleanup::s_CleanupStructuredComment(), s_CountAccessions(), s_ExtractKeys(), s_FastaGetOriginalID(), s_FieldHasNonBlankValue(), s_FindModelEvidanceUop(), s_GatherExistingValues(), s_GetAssemblyInfo(), s_GetBoxStyle(), s_GetDBTree(), s_GetEncodeValues(), s_GetGOText(), s_GetModelEvidance(), s_GetMrnaProteinLink(), s_GetOriginalID(), s_GetSegmentFlags(), s_GetSpliceSite(), s_HasRefSeqPGAPStructuredComment(), s_IsGenomeAnnotationStart(), s_IsGnomonModel(), s_IsMatchById(), s_PassesFilter(), CMacroFunction_RemoveQual::s_RemoveFields(), s_Render_Feat_Evidence(), s_ScanRecursive(), s_SeqDescCompare(), s_SetDBLinkFieldVals(), s_UnpackUserField(), CTreeLabel::SaveToUserObject(), CUser_field::SetFieldRef(), CRegistryFile::SetFieldToValue(), CRegistryWriteView::SetFieldToValue(), SetGoTermValue(), CDBLinkField::SetVal(), CStructuredCommentField::SetVal(), CEditingActionDescUserObject::SetValue(), sGetMethodFromModelEvidence(), sWindowPosFromUserObject(), CMacroFunction_AddDBLink::TheFunction(), CMacroFunction_ParseToStructComm::TheFunction(), CRefGeneTrackLocListPanel::TransferDataFromWindow(), CValidError_desc::ValidateDblink(), CBedWriter::WriteAnnot(), CCSraAlignIterator::x_AddField(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddGoQuals(), CFeatureItem::x_AddQualsExt(), CGuiObjectInfoSeq_align::x_AddUserObject(), x_AlmostEquals(), CGvfWriteRecord::x_AssignAttributeID(), CGvfWriteRecord::x_AssignAttributeParent(), CGvfWriteRecord::x_AssignAttributeVarType(), CBioseqContext::x_CheckForShowComments(), CCleanup::x_CleanupUserField(), CSplitDblinkQuals::x_ConvertStrsToStrs(), CSNPSearchJob::x_DoSearch(), CClonePlacementGlyph::x_Draw(), CTracebackSearchTestFixture::x_FindUsedGis(), CBLASTParams::x_FromUserObject(), CGenomeProjectItem::x_GatherInfo(), CAlignmentSmear::x_GetAnnotName(), CBamUIDataSource::x_GetBamInputs(), CDensegGraphicDataSource::x_GetCigarStr(), CClonePlacementGlyph::x_GetCloneEnds(), CBamUIDataSource::x_GetCSraInputs(), CRegistryReadView::x_GetKeys(), CDensegGraphicDataSource::x_GetMismatchStr(), CUser_object::x_GetRefGeneTrackingField(), CModifySeqId::x_GetRemoveOriginalIdCommand(), CMacroFunction_ParsedText::x_GetSpecialField(), CBamUIDataSource::x_GetSraAccession(), CBamUIDataSource::x_GetSrzAccession(), x_GetTentativeName(), CCommonComponentScorer::x_GetUserCompList(), CFeatureItem::x_HasMethodtRNAscanSE(), CValidError_bioseq::x_HasPGAPStructuredComment(), x_HasTentativeName(), CBioseqIndex::x_InitDescs(), CMiscSeqTable::x_InterpretColumnProperties(), CUser_object::x_IsUnreviewedType(), CUser_object::x_IsUnverifiedType(), CLDBlockJob::x_LoadFtable(), CNetBLASTUIDataSource::x_LoadJobDescriptors(), CBamRefSeqInfo::x_LoadRangesCov(), CGraphTrack::x_LoadSettings(), CAutoDefOptions::x_MakeModifierList(), CSGAnnotJob::x_PercentileButNotMax(), CAlignFilter::x_Query_Op(), CBioseqContext::x_SetAuthorizedAccess(), CBioseqContext::x_SetDataFromUserObjects(), CBioseqContext::x_SetFiletrackURL(), CDeflineGenerator::x_SetFlags(), CAutoDefOptions::x_SetModifierList(), CAutoDefOptions::x_SetSuppressedFeatures(), CSeq_annot_Info::x_UpdateName(), CValidError_desc::x_ValidateStructuredCommentSuffix(), CVcfWriter::x_WriteFeatureFilter(), CVcfWriter::x_WriteFeatureGenotypeData(), CVcfWriter::x_WriteFeatureInfo(), CVcfWriter::x_WriteFeatureQual(), CVcfWriter::x_WriteInit(), CVcfWriter::x_WriteMeta(), CGff2Writer::xAssignFeatureAttributesGoMarkup(), CGtfWriter::xAssignFeatureMethod(), CSrcWriter::xGetOriginalId(), and CWiggleWriter::xWriteTrackLine().

GetData() [2/2]

const CUser_object_Base::TData & CUser_object_Base::GetData ( void  ) const

inline

Get the Data member data.

Returns

Reference to the member data.

Definition at line 335 of file User_object_.hpp.

References CUser_object_Base::m_Data.

Referenced by CTableAnnotDataSource::AddSeqLoc(), CTableAnnotDataSource::AddSnpSeqLoc(), AddUserObjectFieldItems(), CRemoveEmptyGenomeProjectsDB::ApplyToUserObject(), CRemoveDuplicateStructuredComment::ApplyToUserObject(), CRemoveEmptyStructuredComment::ApplyToUserObject(), CModifyStructuredComment::ApplyToUserObject(), CBedFeatureRecord::AssignDisplayData(), BOOST_AUTO_TEST_CASE(), CheckAutoDefOptions(), CComment_rule::CheckGeneralStructuredComment(), CheckLocalId(), CDBLinkField::ClearVal(), CGenomeProjectField::ClearVal(), CStructCommFieldValuePair::ClearVal(), CStructCommDBName::ClearVal(), CStructCommFieldName::ClearVal(), CStructuredCommentField::ClearVal(), CountGoTerms(), CTableAnnotDataSource::CreateFeature(), CTableAnnotDataSource::CreateSnpFeature(), CTableAnnotDataSource::CreateSnps(), CSubmissionWizard::ExportTemplate(), CTableAnnotDataSource::FindLocations(), CFlatModelEvQVal::Format(), fta_build_structured_comment(), fta_dblink_has_sra(), fta_tsa_tls_comment_dblink_check(), CDUpdater::GetBlastDefline(), CUser_object::GetCategory(), CField_type::GetDBLinkFieldFromUserObject(), CEditObjectSeq_desc::GetDescriptorType(), CUser_object::GetExperiment(), CUser_object::GetExperimentType(), CSGUtils::GetFeatFetchDepth(), CBioseq_Info::GetFeatureFetchPolicy(), CUser_object::GetFieldRef(), CGenericStructuredCommentColumn::GetFromComment(), GetGoTermErrors(), CStructCommentSubpanel::GetLabelsFromSeq(), CAnnotObject_Info::GetLocsTypes(), CTableDataValidateParams::GetNamedBoolField(), CProductStringBuilder::GetProductString(), GetProjectID(), CProjectItemExtra::GetStr(), CWriteUtil::GetStringForModelEvidence(), CCommentItem::GetStringForTPA(), CStructCommentFieldPanel::GetStructCommentFields(), GetStructuredCommentFields(), CComment_rule::GetStructuredCommentPrefix(), CGuiObjectInfoSeq_align::GetToolTip(), CReadUtil::GetTrackValue(), CWriteUtil::GetUserObjectByType(), CGenomeProjectField::GetVal(), CDBLinkField::GetVals(), CBankITCommentField::GetVals(), CLocalIDField::GetVals(), CStructCommFieldValuePair::GetVals(), CStructCommFieldName::GetVals(), CStructuredCommentField::GetVals(), HasBadGenomeAssemblyName(), HasBadGenomeAssemblyPartial(), HasBoolField(), HasIntField(), HasRepairedIDs(), HasStringField(), CAutoDefOptions::InitFromUserObject(), CTextView::InitView(), IsAppropriateRule(), CDBLinkField::IsEmpty(), CGenomeProjectField::IsEmpty(), CLocalIDField::IsEmpty(), CStructCommFieldValuePair::IsEmpty(), CStructuredCommentField::IsEmpty(), CComment_rule::IsValid(), CTestApplication::LoadTable(), CDBLink::MergeDBLink(), CEditingActionDescUserObject::Modify(), CEditingActionDescStructCommFieldName::Modify(), CStructuredCommentPanel::OnExport(), SSNP_Info::ParseSeq_feat(), PrintSAM(), PrintTabular(), CEditingActionDescGenomeProjectId::ResetValue(), CEditingActionDescStructCommDbName::ResetValue(), RestoreModelAttributes(), s_ExtractBlastDefline(), s_FindModelEvidanceUop(), s_GetFieldAt(), s_GetMrnaProteinLink(), s_GetOriginalId(), s_GetUserObjectContent(), s_GetUserObjectType(), s_IdXrefsNotReciprocal(), s_IsGnomonModel(), s_IsGoodDescr(), CMacroFunction_RemoveQual::s_RemoveFields(), s_Render_Feat_Evidence(), s_ScanRecursive(), SeqTableFromAssemblyFields(), CProjectItemExtra::SetStr(), CValidErrorSuppress::SetSuppressedCodes(), CValidError_imp::Setup(), CDBLinkField::SetVal(), CStructuredCommentField::SetVal(), CMacroFunction_AddDBLink::TheFunction(), UnpackUserObject(), CValidError_desc::ValidateDblink(), CValidError_bioseq::ValidateSeqDescContext(), CValidError_desc::ValidateUser(), CValidError_bioseq::ValidateWGSMaster(), CGvfWriter::WriteHeader(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddGoQuals(), CFeatureItem::x_AddQualsExt(), x_AlmostEquals(), CGvfWriteRecord::x_AssignAttributesCustom(), CBioseqContext::x_CheckForShowComments(), CTracebackSearchTestFixture::x_FindUsedGis(), CCommentItem::x_GatherDescInfo(), CGenomeProjectItem::x_GatherInfo(), CGenbankGatherer::x_GatherTLS(), CGenbankGatherer::x_GatherTSA(), CCommentItem::x_GatherUserObjInfo(), CGenbankGatherer::x_GatherWGS(), CAlignmentSmear::x_GetAnnotName(), CWriteDB_Impl::x_GetBioseqBinaryHeader(), CWriteDB_Impl::x_GetFastaReaderDeflines(), CAutoDef::x_GetHumanSTRFeatureClauses(), CAutoDef::x_GetHumanSTRv2FeatureClauses(), CMacroFunction_ParsedText::x_GetSpecialField(), CFeatureItem::x_HasMethodtRNAscanSE(), CAutoDef::x_IsHumanSTR(), CUser_object::x_IsUnreviewedType(), CUser_object::x_IsUnverifiedType(), CSubmissionWizard::x_MergeDBLink(), CUser_object::x_RemoveUnreviewedType(), CUser_object::x_RemoveUnverifiedType(), CFeatureGenerator::SImplementation::x_SetComment(), CBioseqContext::x_SetDataFromUserObjects(), CSplitDblinkQuals::x_SplitQuals(), CValidError_desc::x_ValidateStructuredComment(), CGff2Writer::xAssignFeatureAttributesGoMarkup(), CBedTrackRecord::xImportKeyValuePairs(), CVcfReader::xProcessDataLine(), and CWiggleWriter::xWriteTrackLine().

GetDay()

CDate_std_Base::TDay CDate_std_Base::GetDay ( void  ) const

inline

Get the Day member data.

Returns

Copy of the member data.

Definition at line 520 of file Date_std_.hpp.

References CDate_std_Base::CanGetDay(), CDate_std_Base::m_Day, and CSerialObject::ThrowUnassigned().

Referenced by AddDay(), AddMonth(), AddYear(), CDate_std::AsCTime(), BOOST_AUTO_TEST_CASE(), CheckCollectionDate(), CDate_std::Compare(), CDate_std::GetDate(), GetEmblDate(), s_CompareDates(), CAddSecondary::TransferDataToWindow(), CId1FetchApp::WriteHistoryTable(), CSeq_id_PDB_Info::x_NormalizeDate(), and XDateCheck().

GetDb()

const CDbtag_Base::TDb & CDbtag_Base::GetDb ( void  ) const

inline

Get the Db member data.

Returns

Reference to the member data.

Definition at line 220 of file Dbtag_.hpp.

References CDbtag_Base::CanGetDb(), CDbtag_Base::m_Db, and CSerialObject::ThrowUnassigned().

Referenced by CFeatGapInfo::AdjustProteinSeq(), CSeq_id::AdjustScore(), CSeq_id::BaseBlastScore(), CSeq_id::BaseFastaAAScore(), CSeq_id::BaseFastaNAScore(), BOOST_AUTO_TEST_CASE(), CReadDispatcher::CannotProcess(), CannotProcess(), CGeneralToLocalId::CGeneralToLocalId(), CDbtag::Compare(), CSeq_id::Compare(), CSeq_id::ComposeOSLT(), CSeqIdGuesser::CSeqIdGuesser(), CSortableSeq_id::CSortableSeq_id(), CNewCleanup_imp::DbtagBC(), CSeqFormatter::DumpAll(), CBlastDBExtractor::ExtractAccession(), ExtractGnomonModelNum(), CBlastDBExtractor::ExtractSeqId(), CSeq_id_General_Tree::FindInfo(), CSeq_id_General_Tree::FindMatch(), CSeq_id_General_Tree::FindOrCreate(), CFlatSubmitterSeqidQVal::Format(), CFlatXrefQVal::Format(), GetAccessionAndDatabaseSource(), CWholeFileAnnotation::GetAndUseAnnot(), GetCDDPssmIdFromSeqId(), CDbtag::GetDBFlags(), CWriteUtil::GetDbTag(), CAlignFormatUtil::GetDbType(), GetDirectLabel(), CValidErrorFormat::GetFeatureIdLabel(), CWGSDataLoader_Impl::GetFileInfoByGeneral(), variation::GetFocusLocusIDs(), CCSRABlobId::GetGeneralIdType(), GetGeneralOrLocal(), CSeqIdGuesser::GetIdStrings(), CWriteUtil::GetIdType(), CSeq_featHandler::GetLabel(), GetLabel(), CDbtag::GetLabel(), CCommentItem::GetStringForTPA(), CScope_Impl::GetTaxId(), CScope_Impl::GetTaxIds(), CGuiObjectInfoVariant::GetToolTip(), CDbtag::GetType(), CGeneralIDField::GetVal(), CEditingActionBiosourceDbxref::GetValue(), CEditingActionFeatDbxref::GetValue(), CEditingActionGeneralIdDb::GetValue(), CTraceDataProxy::HasData(), CSGTraceGraphDS::HasData(), CSeq_id::IdentifyAccession(), CDbtag::IsApproved(), CDbtag::IsApprovedNoCase(), CFeatGlyph::IsDbVar(), CEditingActionFileId::IsSetValue(), CEditingActionGeneralIdTag::IsSetValue(), CDbtag::IsSkippable(), IsStringId(), CSGSequenceDS::IsTraceAssembly(), CValidator::IsValidDbxref(), IsWGSGeneral(), CTraceDataProxy::LoadData(), CSGTraceGraphDS::LoadData(), CId1Reader::LoadSeq_idBlob_ids(), CId1Reader::LoadSeq_idSeq_ids(), CDbtag::Match(), Normalize(), CProcessor::OffsetId(), CSeq_id_General_Str_Info::Parse(), CSeq_id_General_Str_Info::TKey::ParseCaseVariant(), CSeq_id_General_PlainInfo::ParseCaseVariant(), SSNP_Info::ParseSeq_feat(), CWGSResolver_Ids::ParseWGSPrefix(), CFindASN1Dlg::ReplaceInDbxref(), Residue::Residue(), CWGSClient::ResolveGeneral(), s_AssignDbtag(), variation::CVariationUtil::s_AttachGeneIDdbxref(), s_FindSmartSeqId(), s_Fingerprint_Dbtag(), s_GetAlignmentTooltip(), CMacroFunction_MakeBoldXrefs::s_GetBarcodeId(), NSearchFeatPanel::s_GetFeatureLabel(), variation::CVariationUtil::CVariantPropertiesIndex::s_GetGeneID(), s_GetVariationDbtagLabel(), s_IsSkippableDbtag(), s_ShouldUseOriginalID(), s_SkipFeature(), SeqDB_SimplifySeqid(), CSeqDBImpl::SeqidToOids(), CSeq_id::Set(), CDbtag::SetAsMatchingTo(), sx_GetReadId(), TestCollidingAccessionFixes(), CSingleFeatValidator::Validate(), CValidError_imp::ValidateDbxref(), CValidError_bioseq::ValidateSeqDescContext(), CValidError_bioseq::ValidateSeqId(), CVDBBlastUtil::VDBIdType(), CFastaOstreamEx::x_AddDbxrefAttribute(), CFeatureItem::x_AddFTableDbxref(), CFeatureItem::x_AddQualsVariation(), CWriteDB_IsamIndex::x_AddTraceIds(), x_Assign(), CEditSeqId::x_CollectChangedIds(), CRemoveGeneralId::x_CollectChangedIds(), CSeq_id_Resolver__LRG::x_Create(), CSeq_id_General_Tree::x_FindInfo(), CCommentItem::x_GatherDescInfo(), CDBSourceItem::x_GatherInfo(), CFeatGlyph::x_GetFeatureId(), CSeqDBVol::x_GetHdrAsn1(), x_GetLabel_Content(), CPrimaryItem::x_GetStrForPrimary(), CReferenceItem::x_Init(), CFileIDField::x_IsNCBIFILEId(), CId2ReaderBase::x_ProcessGetSeqIdSeqId(), CCdregionValidator::x_ReportTranslationProblems(), CNewCleanup_imp::x_SplitDbtag(), CSeq_id_General_Tree::x_Unindex(), CSeq_id::x_WriteContentAsFasta(), CVcfWriter::x_WriteFeatureInfo(), and XISAGappedSeqLoc().

GetDbtag()

const CPerson_id_Base::TDbtag & CPerson_id_Base::GetDbtag

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 115 of file Person_id_.cpp.

References CPerson_id_Base::CheckSelected(), CPerson_id_Base::e_Dbtag, and CPerson_id_Base::m_object.

GetFields()

const CUser_field_Base::C_Data::TFields & CUser_field_Base::C_Data::GetFields ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 901 of file User_field_.hpp.

Referenced by CFlatModelEvQVal::Format(), GetIdField(), CUser_object::GetRefGeneTrackingAssembly(), CUser_object::GetRefGeneTrackingIdenticalTo(), CWriteUtil::GetStringForModelEvidence(), CCommentItem::GetStringForRefTrack(), CCommentItem::GetStringForTPA(), CUser_object::CRefGeneTrackingAccession::MakeAccessionFromUserField(), s_CountAccessions(), s_ExtractKeys(), s_GetAssemblyInfo(), s_GetDBTree(), s_GetGOText(), s_GetModelEvidance(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddGoQuals(), CFeatureItem::x_AddQualsExt(), CGuiObjectInfoSeq_align::x_AddUserObject(), CRegistryReadView::x_GetKeys(), CCommonComponentScorer::x_GetUserCompList(), CAutoDefOptions::x_MakeModifierList(), CAutoDefOptions::x_SetModifierList(), CVcfWriter::x_WriteFeatureGenotypeData(), and CGff2Writer::xAssignFeatureAttributesGoMarkup().

GetFirst()

const CName_std_Base::TFirst & CName_std_Base::GetFirst ( void  ) const

inline

Get the First member data.

Returns

Reference to the member data.

Definition at line 469 of file Name_std_.hpp.

References CName_std_Base::CanGetFirst(), CName_std_Base::m_First, and CSerialObject::ThrowUnassigned().

Referenced by AddContact(), NMacroUtil::ApplyAuthorNames(), NMacroUtil::ApplyFirstName(), NMacroUtil::ApplyMiddleInitial(), CValidator::BadCharsInAuthor(), BOOST_AUTO_TEST_CASE(), FixCapitalization(), FixInitials(), GenerateInitials(), CPubField::GetAuthorField(), CEditingActionDescAuthorFirstName::GetValue(), CEditingActionDescAuthorInitials::GetValue(), MoveMiddleToFirst(), NMacroUtil::RemoveFirstName(), NMacroUtil::RemoveMiddleInitial(), CFindASN1Dlg::ReplaceInAuthor(), CSubmitterNamePanel::ReportMissingFields(), CMacroFunction_AuthorFix::s_BuildName(), CCleanup::s_CleanupNameStdBC(), CCleanup::s_FixEtAl(), CMacroFunction_AuthorFix::s_FixInitials(), IAuthorEditor::s_FixInitials(), s_GetAuthorNames(), CMacroFunction_AuthorFix::s_MoveMiddleToFirst(), CSingleAuthorPanel::s_ParseInitialsFromName(), CMacroFunction_AuthorFix::s_ReverseAuthorNames(), CMacroFunction_AuthorFix::s_TruncateMiddleInitials(), CPubField::SetAuthorField(), CApplyAuthorsTreeItemData::SetData(), CEditingActionDescAuthorFirstName::SetValue(), CContactPanel::TransferDataToWindow(), CSubmitterPanel_Depr::TransferDataToWindow(), CValidError_imp::ValidateAuthorList(), CValidError_imp::ValidateAuthorsInPubequiv(), CValidError_imp::ValidateSubmitBlock(), CMacroFunction_AddPubAuthor::x_AddAuthor(), and CFixAuthorCap::x_ApplyToCAuth().

GetFull()

const CName_std_Base::TFull & CName_std_Base::GetFull ( void  ) const

inline

Get the Full member data.

Returns

Reference to the member data.

Definition at line 563 of file Name_std_.hpp.

References CName_std_Base::CanGetFull(), CName_std_Base::m_Full, and CSerialObject::ThrowUnassigned().

Referenced by CPerson_id::GetLabel(), CAuthor::GetLabelV2(), and CFindASN1Dlg::ReplaceInAuthor().

GetHour()

CDate_std_Base::THour CDate_std_Base::GetHour ( void  ) const

inline

Get the Hour member data.

Returns

Copy of the member data.

Definition at line 614 of file Date_std_.hpp.

References CDate_std_Base::CanGetHour(), CDate_std_Base::m_Hour, and CSerialObject::ThrowUnassigned().

Referenced by CDate_std::AsCTime(), CDate_std::Compare(), CDate_std::GetDate(), CNewCleanup_imp::x_DateStdBC(), and CSeq_id_PDB_Info::x_NormalizeDate().

GetId()

CObject_id_Base::TId CObject_id_Base::GetId ( void  ) const

inline

Get the variant data.

Returns

Copy of the variant data.

Definition at line 270 of file Object_id_.hpp.

References CObject_id_Base::CheckSelected(), CObject_id_Base::e_Id, and CObject_id_Base::m_Id.

Referenced by CThreeFeatRecord::AddFeature(), CFeatureGenePanel::AddReciprocicalXref(), AddToFeatureIdColumn(), subfuse::CSubmissionCollector::AdjustLocalIds(), AdjustSingleFeature(), CApplyFBOL::apply(), CBarcodeTool::ApplyDbxrefs(), CGffRecord::AssignSeqId(), CObject_id::AsString(), BOOST_AUTO_TEST_CASE(), CBioseqIndex::CBioseqIndex(), CGeneralToLocalId::CGeneralToLocalId(), CComment_rule::CheckGeneralField(), CLocalToGeneralId::CLocalToGeneralId(), CSeq_id::ComposeOSLT(), CBlobSplitterImpl::CopySkeleton(), CRemoveSeqId::CRemoveSeqId(), CSeq_id_Local_Info::CSeq_id_Local_Info(), CSeqIdGuesser::CSeqIdGuesser(), CSortableSeq_id::CSortableSeq_id(), CNewCleanup_imp::DbtagBC(), CCleanup::ExpandGeneToIncludeChildren(), FindHighestFeatureId(), CSeqDBGiList::FindId(), CSeqDBNegativeList::FindId(), CSeq_id_General_Tree::FindMatch(), CSeq_id_Local_Tree::FindOrCreate(), CSeq_id_General_Tree::FindOrCreate(), fta_sort_biosource(), GetAccessionAndDatabaseSource(), CWriteUtil::GetDbTag(), CUser_field::GetFieldRef(), CWGSDataLoader_Impl::GetFileInfoByGeneral(), variation::GetFocusLocusIDs(), GetGeneForFeature(), CScoreLookup::GetGeneId(), GetGeneralOrLocal(), CObject_id::GetGi(), CAlignFormatUtil::GetGnlID(), GetIdField(), CSeqIdGuesser::GetIdStrings(), CObject_id::GetIdType(), CSeq_featHandler::GetLabel(), CGuiObjectInfoVariant::GetLinks(), CAnnotObject_Info::GetLocsTypes(), CSeq_id_Local_Info::GetPackedSeqId(), CReadSharedObjectIdHookBase::GetSharedObject_id(), CScope_Impl::GetTaxId(), CScope_Impl::GetTaxIds(), CGuiObjectInfoVariant::GetToolTip(), CEditingActionBiosourceDbxref::GetValue(), CEditingActionFeatDbxref::GetValue(), IsLocalID(), CValidator::IsValidDbxref(), CFeatComparatorByLabel::Less(), CTraceDataProxy::LoadData(), CSGTraceGraphDS::LoadData(), Make_SeqID_String(), OjectIdsAreEqual(), SChildLess::operator()(), CSeq_id_General_Id_Info::Pack(), CFeaturePropagator::Propagate(), CFeaturePropagator::PropagateFeatureList(), CDUpdater::reformatBioseq(), RemapOtherProtFeats(), CCleanup::RepairXrefs(), Residue::Residue(), CWGSClient::ResolveGeneral(), s_AreLinkedToDifferentFeats(), s_AssignObject_id(), variation::CVariationUtil::s_AttachGeneIDdbxref(), s_FindHighestFeatId(), CCreateGeneModelTask::s_FindHighestFeatId(), CFixFeatureId::s_FindHighestFeatureId(), s_Fingerprint_Object_id(), s_GeneralTagsMatch(), s_GetAlignmentTooltip(), s_GetBareId(), s_GetBlastScore(), s_GetFeatureIdLabel(), NSearchFeatPanel::s_GetFeatureLabel(), variation::CVariationUtil::CVariantPropertiesIndex::s_GetGeneID(), s_IsRelated(), CFixFeatureId::s_ReassignFeatureIds(), s_ReplaceLocalId(), s_UnpackUserField(), s_UpdateFeatureId(), CFixFeatureId::s_UpdateFeatureIds(), SeqDB_SimplifySeqid(), CSeq_id::Set(), CObject_id::SetAsMatchingTo(), sFeatureHasXref(), sGetFeatMapKey(), sx_MakeUniqueId(), CValidError_imp::Validate(), CValidError_imp::ValidateDbxref(), CFastaOstreamEx::x_AddDbxrefAttribute(), CFeatureItem::x_AddFTableDbxref(), CWriteDB_IsamIndex::x_AddTraceIds(), CAlnTableDS::x_AdjustColumns(), x_Assign(), CWriteDB_Impl::x_BuildDeflinesFromBioseq(), CEditSeqId::x_CollectChangedIds(), CDeltaBlastTestFixture::x_CountNumberUniqueIds(), CBioseqEditor::x_DeleteObject(), CSeq_id_General_Tree::x_FindInfo(), CSeq_id_Local_Tree::x_FindInfo(), CVectorScreen::x_FindLocalId(), CDBSourceItem::x_FormatDBSourceID(), CCommentItem::x_GatherDescInfo(), CGsdbComment::x_GatherInfo(), CLocalIdComment::x_GatherInfo(), CFileIdComment::x_GatherInfo(), CBioseq_set_Info::x_GetBioseq_set_Id(), CBioseqEditor::x_GetDeleteCommand(), CFeatGlyph::x_GetFeatureId(), CSeqDBVol::x_GetHdrAsn1(), x_GetLabel_Content(), CFeatureGenerator::SImplementation::x_HandleCdsExceptions(), CFeatureGenerator::SImplementation::x_HandleRnaExceptions(), CValidError_feat::x_HasNonReciprocalXref(), CXcompareAnnotsApplication::x_ProcessComparison(), CId2ReaderBase::x_ProcessGetSeqIdSeqId(), CGeneModelFeatJob::x_ProcessLandMarkFeatures(), CCleanupHugeAsnReader::x_RecordFeatureId(), CDeflineGenerator::x_SetFlags(), COligoSpecificityTemplate::x_SortHit(), CSplitDataLoader::x_SplitSet(), CSeq_id_Local_Tree::x_Unindex(), CSeq_id_General_Tree::x_Unindex(), CVcfWriter::x_WriteFeatureId(), CVcfWriter::x_WriteFeatureInfo(), CThreeFeatManager::xFindExistingRecord(), CSrcWriter::xGatherDb(), CSrcWriter::xGatherTaxonId(), XISAGappedSeqLoc(), and CFeatTableEdit::xRenameFeatureId().

GetInitials()

const CName_std_Base::TInitials & CName_std_Base::GetInitials ( void  ) const

inline

Get the Initials member data.

Returns

Reference to the member data.

Definition at line 610 of file Name_std_.hpp.

References CName_std_Base::CanGetInitials(), CName_std_Base::m_Initials, and CSerialObject::ThrowUnassigned().

Referenced by NMacroUtil::ApplyFirstName(), NMacroUtil::ApplyMiddleInitial(), CValidator::BadCharsInAuthor(), BOOST_AUTO_TEST_CASE(), FixCapitalization(), FixInitials(), GenerateInitials(), CPubField::GetAuthorField(), pub_report::GetAuthorsFromList(), GetFirstAuthor(), CPerson_id::GetLabel(), CAuthor::GetLabelV2(), pub_report::GetNameFromStdName(), CEditingActionDescAuthorInitials::GetValue(), MoveMiddleToFirst(), fix_pub::PrintPub(), NMacroUtil::RemoveFirstName(), NMacroUtil::RemoveMiddleInitial(), CFindASN1Dlg::ReplaceInAuthor(), CCleanup::s_CleanupNameStdBC(), CMacroFunction_FixPubCaps::s_FixCapitalizationInAuthor(), CCleanup::s_FixEtAl(), CMacroFunction_AuthorFix::s_FixInitials(), IAuthorEditor::s_FixInitials(), CMacroFunction_AuthorFix::s_MoveMiddleToFirst(), CSingleAuthorPanel::s_ParseInitialsFromName(), CMacroFunction_AuthorFix::s_ReverseAuthorNames(), CMacroFunction_AuthorFix::s_TruncateMiddleInitials(), CPubField::SetAuthorField(), CEditingActionDescAuthorFirstName::SetValue(), fix_pub::TenAuthorsProcess(), CValidError_imp::ValidateAuthorList(), and CSrcWriter::xGather().

GetInt()

CUser_field_Base::C_Data::TInt CUser_field_Base::C_Data::GetInt ( void  ) const

inline

Get the variant data.

Returns

Copy of the variant data.

Definition at line 714 of file User_field_.hpp.

Referenced by CRemoveEmptyGenomeProjectsDB::ApplyToUserObject(), BOOST_AUTO_TEST_CASE(), BOOST_AUTO_TEST_SUITE_END(), CComment_rule::CheckFieldValue(), CComment_rule::CheckGeneralField(), CLDBlockGlyph::CLDBlockGlyph(), CFlatModelEvQVal::Format(), CRegistryFile::FromConfigFile(), CDockLayoutTree::CNode::FromUserObject(), CBLASTParams::FromUserObject(), CConstSageData::GetCount(), CSGUtils::GetFeatFetchDepth(), CSettingsSet::GetInt(), CUser_field::GetInt(), CAnnotObject_Info::GetLocsTypes(), CSeq_annot_SplitInfo::GetName(), CFlatGoQVal::GetPubmedId(), CBlastQuerySourceBioseqSet::GetSegmentInfo(), CWriteUtil::GetStringForModelEvidence(), CCommentItem::GetStringForRefTrack(), CGuiObjectInfoSeq_align::GetToolTip(), CEditingActionDescGenomeProjectId::GetValue(), CPhyloSelectionSet::InitFromUserObject(), CPhyTreeView::InitView(), CComment_rule::IsValid(), CTableDelimiterRules::LoadAsn(), CTableImportColumn::LoadAsn(), MakeCompartments(), SSNP_Info::ParseSeq_feat(), CTabularFormatter_AssemblyInfo::Print(), CDemoSeqQaApp::Run(), s_CheckTraceMateAlign(), s_GetAssemblyInfo(), s_GetModelEvidance(), s_GetSegmentFlags(), s_ScanRecursive(), sWindowPosFromUserObject(), CBedWriter::WriteAnnot(), CGuiObjectInfoSeq_align::x_AddUserObject(), CBLASTParams::x_FromUserObject(), CGenomeProjectItem::x_GatherInfo(), CCommonComponentScorer::x_GetUserCompList(), CBamRefSeqInfo::x_LoadRangesCov(), and CSeq_annot_Info::x_UpdateName().

GetInts()

const CUser_field_Base::C_Data::TInts & CUser_field_Base::C_Data::GetInts ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 841 of file User_field_.hpp.

Referenced by CDockLayoutTree::CNode::FromUserObject(), CSettingsSet::GetIntVec(), CAnnotObject_Info::GetLocsTypes(), CPhyloSelectionSet::InitFromUserObject(), CTableDelimiterRules::LoadAsn(), CCleanup::s_AddNumToUserField(), s_GetModelEvidance(), and s_ScanRecursive().

GetLabel()

const CUser_field_Base::TLabel & CUser_field_Base::GetLabel ( void  ) const

inline

Get the Label member data.

Returns

Reference to the member data.

Definition at line 947 of file User_field_.hpp.

References CUser_field_Base::m_Label, and CUser_field_Base::ResetLabel().

Referenced by CRemoveEmptyGenomeProjectsDB::ApplyToUserObject(), CModifyStructuredComment::ApplyToUserObject(), CComment_rule::CheckGeneralField(), CUser_field::DeleteField(), CFlatModelEvQVal::Format(), CNewCleanup_imp::GeneFeatBC(), CUser_object::GetCategory(), CSGUtils::GetFeatFetchDepth(), CBioseq_Info::GetFeatureFetchPolicy(), CUser_field::GetFieldRef(), CUser_object::GetFieldRef(), CUser_field::GetFieldsMap(), GetIdField(), CStructCommentSubpanel::GetLabelsFromSeq(), CAnnotObject_Info::GetLocsTypes(), GetPrefixOrSuffixType(), CProductStringBuilder::GetProductString(), CWriteUtil::GetStringForModelEvidence(), CCommentItem::GetStringForRefTrack(), CReadUtil::GetTrackValue(), CBankITCommentField::GetVals(), CLocalIDField::GetVals(), CLocalIDField::IsEmpty(), CGenomeProjectField::IsGenomeProjectID(), IsMatchingIdMissing(), CEditingActionDescUserObject::Modify(), CEditingActionDescStructCommFieldName::Modify(), CEditingActionDescLocalId::Modify(), CEditingActionDescComment::Modify(), SSNP_Info::ParseSeq_feat(), CDUpdater::reformatBioseq(), CEditingActionDescGenomeProjectId::ResetValue(), CEditingActionDescStructCommDbName::ResetValue(), RestoreModelAttributes(), CDemoSeqQaApp::Run(), CCleanup::s_CleanupGeneOntology(), CCleanup::s_CleanupGenomeAssembly(), CCleanup::s_CleanupStructuredComment(), s_CountAccessions(), s_ExtractKeys(), s_FastaGetOriginalID(), s_FieldHasLabel(), s_GetAssemblyInfo(), s_GetModelEvidance(), s_GetMrnaProteinLink(), s_GetOriginalID(), s_GetUserObjectContent(), s_IsGnomonModel(), s_IsSuppressField(), CMacroFunction_SetStructCommDb::s_MoveSuffixToTheEnd(), s_Render_Feat_Evidence(), s_ScanRecursive(), s_UnpackUserField(), s_UserFieldCompare(), CUser_object::SetFieldRef(), CUser_field::SetFieldRef(), CMacroFunction_AddDBLink::TheFunction(), CMacroFunction_ParseToStructComm::TheFunction(), CValidError_desc::ValidateDblink(), CValidError_bioseq::ValidateSeqDescContext(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddGoQuals(), CFeatureItem::x_AddQualsExt(), CGuiObjectInfoSeq_align::x_AddUserObject(), x_AlmostEquals(), CBioseqContext::x_CheckForShowComments(), CFeatureGenerator::SImplementation::x_CheckMatch(), CCleanup::x_CleanupUserField(), CTracebackSearchTestFixture::x_FindUsedGis(), CGenomeProjectItem::x_GatherInfo(), CAlignmentSmear::x_GetAnnotName(), CModifySeqId::x_GetRemoveOriginalIdCommand(), CMacroFunction_ParsedText::x_GetSpecialField(), x_GetTentativeName(), CFeatureItem::x_HasMethodtRNAscanSE(), x_HasTentativeName(), CBioseqIndex::x_InitDescs(), CStructuredCommentField::x_InsertFieldAtCorrectPosition(), CStructCommFieldValuePair::x_InsertFieldAtCorrectPosition(), CUser_object::x_IsUnreviewedType(), CUser_object::x_IsUnverifiedType(), CBioseqContext::x_SetDataFromUserObjects(), CDeflineGenerator::x_SetFlags(), CNullProcess::x_UserFieldCompare(), CGff2Writer::xAssignFeatureAttributesGoMarkup(), CSrcWriter::xGetOriginalId(), and CWiggleWriter::xWriteTrackLine().

GetLast()

const CName_std_Base::TLast & CName_std_Base::GetLast ( void  ) const

inline

Get the Last member data.

Returns

Reference to the member data.

Definition at line 422 of file Name_std_.hpp.

References CName_std_Base::CanGetLast(), CName_std_Base::m_Last, and CSerialObject::ThrowUnassigned().

Referenced by AddContact(), CValidator::BadCharsInAuthor(), FixCapitalization(), fta_check_long_last_name(), CPubField::GetAuthorField(), pub_report::GetAuthorsFromList(), GetFirstAuthor(), CPerson_id::GetLabel(), CAuthor::GetLabelV2(), pub_report::GetNameFromStdName(), CEditingActionDescAuthorLastName::GetValue(), CValidError_imp::HasName(), SAuthorEmpty::operator()(), fix_pub::PrintPub(), CFindASN1Dlg::ReplaceInAuthor(), CSubmitterNamePanel::ReportMissingFields(), CCleanup::s_CleanupNameStdBC(), CCleanup::s_FixEtAl(), s_GetAuthorMatchString(), s_GetStringFromAuthor(), CMacroFunction_AuthorFix::s_ReverseAuthorNames(), CPubField::SetAuthorField(), fix_pub::TenAuthorsProcess(), CContactPanel::TransferDataToWindow(), CSubmitterPanel_Depr::TransferDataToWindow(), CValidError_imp::ValidateAuthorList(), CValidError_imp::ValidateAuthorsInPubequiv(), CValidError_imp::ValidateSubmitBlock(), CFixAuthorCap::x_ApplyToCAuth(), CConvertAllAuthorToConsortium::x_ApplyToCAuth(), CConvertAuthorToConsortiumWhereConstraint::x_ApplyToCAuth(), and CSrcWriter::xGather().

GetLim()

CInt_fuzz_Base::TLim CInt_fuzz_Base::GetLim ( void  ) const

inline

Get the variant data.

Returns

Copy of the variant data.

Definition at line 642 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::CheckSelected(), CInt_fuzz_Base::e_Lim, and CInt_fuzz_Base::m_Lim.

Referenced by CConvertGapsBySize::apply(), CCombineAdjacentGaps::apply_impl(), BOOST_AUTO_TEST_CASE(), CSeq_loc::ChangeToPackedInt(), CSeq_loc_Conversion::ConvertInterval(), CSeq_loc_Conversion::ConvertPoint(), FixMixLoc(), GetDeltaSeqSummary(), variation::GetFuzzSign(), CInt_fuzz::GetLabel(), GetLowHighFromSeqLoc(), CSeq_point::IsLeftOf(), CPacked_seqpnt::IsPartialStart(), CSeq_interval::IsPartialStart(), CSeq_point::IsPartialStart(), CPacked_seqpnt::IsPartialStop(), CSeq_interval::IsPartialStop(), CSeq_point::IsPartialStop(), variation::IsPureFuzzPoint(), CSeq_point::IsRightOf(), CPacked_seqpnt::IsTruncatedStart(), CSeq_interval::IsTruncatedStart(), CSeq_point::IsTruncatedStart(), CPacked_seqpnt::IsTruncatedStop(), CSeq_interval::IsTruncatedStop(), CSeq_point::IsTruncatedStop(), CInt_fuzz::Negate(), SSNP_Info::ParseSeq_feat(), CSeq_loc_Conversion::ReverseFuzz(), s_CheckFuzz(), variation::CHgvsParser::s_IntWithFuzzToStr(), s_IsBetween(), s_PrintLocAsJavascriptArray(), s_RemoveBogusFuzzFromIntervals_Helper(), variation::CHgvsParser::s_SetStartOffset(), variation::CHgvsParser::s_SetStopOffset(), SeqIntPartialCheck(), SeqLocPartialCheck(), variation::SwapLtGtFuzz(), CValidError_bioseq::ValidateDelta(), CSeqMap::x_Add(), CFlatSeqLoc::x_Add(), CRangeWithFuzz::x_AddFuzz(), x_Assign(), CGvfWriteRecord::x_AssignAttributeEndRange(), CGvfWriteRecord::x_AssignAttributeStartRange(), CSGFeatureJob::x_CalcIntervals(), CFeatGlyph::x_DrawFeatureBar(), CFeatGlyph::x_DrawRSites(), CSeq_loc_Mapper_Base::x_FixNonsenseFuzz(), CFlatSeqLoc::x_FuzzToDisplayed(), variation_ref::CHgvsParser::x_general_pos(), CFeatGlyph::x_GetUndefinedBp_from(), CFeatGlyph::x_GetUndefinedBp_to(), variation_ref::CHgvsParser::x_IntWithFuzzToStr(), CMappingRange::x_Map_Fuzz(), CSeq_loc_Mapper_Base::x_NextMappingRange(), CValidError_imp::x_ReportInvalidFuzz(), variation_ref::CHgvsParser::x_seq_ref(), and CNewCleanup_imp::x_SeqPointBC().

GetMax()

CInt_fuzz_Base::C_Range::TMax CInt_fuzz_Base::C_Range::GetMax ( void  ) const

inline

Get the Max member data.

Returns

Copy of the member data.

Definition at line 472 of file Int_fuzz_.hpp.

References CSerialObject::ThrowUnassigned().

Referenced by CInt_fuzz::AssignTranslated(), CFeatGlyph::GetRange(), variation::CHgvsParser::s_IntWithFuzzToStr(), CFlatSeqLoc::x_Add(), CRangeWithFuzz::x_AddFuzz(), x_Assign(), CGvfWriteRecord::x_AssignAttributeEndRange(), CGvfWriteRecord::x_AssignAttributeStartRange(), CFeatGlyph::x_DrawFeatureBar_sv(), variation_ref::CHgvsParser::x_IntWithFuzzToStr(), and xgbload_number().

GetMiddle()

const CName_std_Base::TMiddle & CName_std_Base::GetMiddle ( void  ) const

inline

Get the Middle member data.

Returns

Reference to the member data.

Definition at line 516 of file Name_std_.hpp.

References CName_std_Base::CanGetMiddle(), CName_std_Base::m_Middle, and CSerialObject::ThrowUnassigned().

Referenced by CFindASN1Dlg::ReplaceInAuthor(), and CCleanup::s_CleanupNameStdBC().

GetMin()

CInt_fuzz_Base::C_Range::TMin CInt_fuzz_Base::C_Range::GetMin ( void  ) const

inline

Get the Min member data.

Returns

Copy of the member data.

Definition at line 519 of file Int_fuzz_.hpp.

References CSerialObject::ThrowUnassigned().

Referenced by CInt_fuzz::AssignTranslated(), CFeatGlyph::GetRange(), variation::CHgvsParser::s_IntWithFuzzToStr(), CFlatSeqLoc::x_Add(), CRangeWithFuzz::x_AddFuzz(), x_Assign(), CGvfWriteRecord::x_AssignAttributeEndRange(), CGvfWriteRecord::x_AssignAttributeStartRange(), CFeatGlyph::x_DrawFeatureBar_sv(), variation_ref::CHgvsParser::x_IntWithFuzzToStr(), and xgbload_number().

GetMinute()

CDate_std_Base::TMinute CDate_std_Base::GetMinute ( void  ) const

inline

Get the Minute member data.

Returns

Copy of the member data.

Definition at line 661 of file Date_std_.hpp.

References CDate_std_Base::CanGetMinute(), CDate_std_Base::m_Minute, and CSerialObject::ThrowUnassigned().

Referenced by CDate_std::AsCTime(), CDate_std::Compare(), CDate_std::GetDate(), CNewCleanup_imp::x_DateStdBC(), and CSeq_id_PDB_Info::x_NormalizeDate().

GetMl()

const CPerson_id_Base::TMl & CPerson_id_Base::GetMl ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 371 of file Person_id_.hpp.

References CPerson_id_Base::CheckSelected(), CPerson_id_Base::e_Ml, and CPerson_id_Base::m_string.

Referenced by CAuthor::ConvertMlToStandard(), pub_report::GetAuthorsFromList(), GetAuthorString(), CPerson_id::GetLabel(), CAuthor::GetLabelV2(), pub_report::GetNameFromStdName(), CValidError_imp::HasName(), SAuthorEmpty::operator()(), and CFindASN1Dlg::ReplaceInAuthor().

GetMonth()

CDate_std_Base::TMonth CDate_std_Base::GetMonth ( void  ) const

inline

Get the Month member data.

Returns

Copy of the member data.

Definition at line 473 of file Date_std_.hpp.

References CDate_std_Base::CanGetMonth(), CDate_std_Base::m_Month, and CSerialObject::ThrowUnassigned().

Referenced by AddDay(), AddMonth(), AddYear(), CDate_std::AsCTime(), BOOST_AUTO_TEST_CASE(), CheckCollectionDate(), CDate_std::Compare(), CDate_std::GetDate(), GetEmblDate(), s_CompareDates(), CAddSecondary::TransferDataToWindow(), CId1FetchApp::WriteHistoryTable(), CSeq_id_PDB_Info::x_NormalizeDate(), and XDateCheck().

GetName()

const CPerson_id_Base::TName & CPerson_id_Base::GetName

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 137 of file Person_id_.cpp.

References CPerson_id_Base::CheckSelected(), CPerson_id_Base::e_Name, and CPerson_id_Base::m_object.

Referenced by CValidator::BadCharsInAuthor(), get_auth_from_toks(), CReferenceItem::GetAuthNames(), CPubField::GetAuthorField(), pub_report::GetAuthorsFromList(), GetAuthorString(), GetFirstAuthor(), CPerson_id::GetLabel(), CAuthor::GetLabelV2(), pub_report::GetNameFromStdName(), CEditingActionDescAuthorFirstName::GetValue(), CEditingActionDescAuthorLastName::GetValue(), CEditingActionDescAuthorSuffix::GetValue(), CEditingActionDescAuthorInitials::GetValue(), HasAuthor(), CValidError_imp::HasName(), CAuthorNamesPanel::IsAuthorEmpty(), CSingleAuthorPanel::IsPlaceholder(), CEditingActionDescAuthorFirstName::IsSetValue(), CEditingActionDescAuthorLastName::IsSetValue(), CEditingActionDescAuthorSuffix::IsSetValue(), CEditingActionDescAuthorInitials::IsSetValue(), SAuthorEmpty::operator()(), fix_pub::PrintPub(), CFindASN1Dlg::ReplaceInAuthor(), CSubmitterNamePanel::ReportMissingFields(), IAuthorEditor::s_FixInitials(), s_GetAuthorMatchString(), s_GetStringFromAuthor(), CPubField::SetAuthorField(), CApplyAuthorsTreeItemData::SetData(), CEditingActionDescAuthorFirstName::SetValue(), fix_pub::TenAuthorsProcess(), CSubmitterNamePanel::TransferDataFromWindow(), CValidError_imp::ValidateSubmitBlock(), CFixAuthorCap::x_ApplyToCAuth(), CStripAuthorSuffix::x_ApplyToCAuth(), CConvertAllAuthorToConsortium::x_ApplyToCAuth(), CConvertAuthorToConsortiumWhereConstraint::x_ApplyToCAuth(), and CSrcWriter::xGather().

GetNum()

CUser_field_Base::TNum CUser_field_Base::GetNum ( void  ) const

inline

Get the Num member data.

Returns

Copy of the member data.

Definition at line 984 of file User_field_.hpp.

References CUser_field_Base::CanGetNum(), CUser_field_Base::m_Num, and CSerialObject::ThrowUnassigned().

Referenced by CollectUserField(), CEditingActionDescUserObject::Modify(), CCleanup::s_AddNumToUserField(), and s_GetModelEvidance().

GetObject()

const CUser_field_Base::C_Data::TObject & CUser_field_Base::C_Data::GetObject

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 176 of file User_field_.cpp.

Referenced by BOOST_AUTO_TEST_CASE(), CDockContainerDescr::FromUserObject(), CBLASTParams::FromUserObject(), CWndLayoutReg::GetDefaultLayout(), CUser_object::GetExperimentType(), CWndLayoutReg::GetLayout(), CTreeLabel::InitializeFromUserObject(), s_IsGnomonModel(), s_Render_Feat_Evidence(), s_ScanRecursive(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddQualsExt(), and CFeatureItem::x_HasMethodtRNAscanSE().

GetObjects()

const CUser_field_Base::C_Data::TObjects & CUser_field_Base::C_Data::GetObjects ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 921 of file User_field_.hpp.

Referenced by CDockLayoutTree::CNode::FromUserObject(), CComplexRelation::FromUserObject(), CPhyloSelectionSetMgr::InitFromUserObject(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddQualsExt(), and CNetBLASTUIDataSource::x_LoadJobDescriptors().

GetOs()

const CUser_field_Base::C_Data::TOs & CUser_field_Base::C_Data::GetOs ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 795 of file User_field_.hpp.

Referenced by CSnpBitfieldFactory::CreateBitfield(), CSnpBitfield2::CSnpBitfield2(), and SSNP_Info::ParseSeq_feat().

GetOss()

const CUser_field_Base::C_Data::TOss & CUser_field_Base::C_Data::GetOss ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 881 of file User_field_.hpp.

Referenced by CCleanup::s_AddNumToUserField().

GetP_m()

CInt_fuzz_Base::TP_m CInt_fuzz_Base::GetP_m ( void  ) const

inline

Get the variant data.

Returns

Copy of the variant data.

Definition at line 582 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::CheckSelected(), CInt_fuzz_Base::e_P_m, and CInt_fuzz_Base::m_P_m.

Referenced by CInt_fuzz::GetLabel(), CFlatSeqLoc::x_Add(), CRangeWithFuzz::x_AddFuzz(), and x_Assign().

GetPct()

CInt_fuzz_Base::TPct CInt_fuzz_Base::GetPct ( void  ) const

inline

Get the variant data.

Returns

Copy of the variant data.

Definition at line 615 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::CheckSelected(), CInt_fuzz_Base::e_Pct, and CInt_fuzz_Base::m_Pct.

Referenced by CInt_fuzz::AssignTranslated(), CInt_fuzz::GetLabel(), CFlatSeqLoc::x_Add(), CRangeWithFuzz::x_AddFuzz(), and x_Assign().

GetRange()

const CInt_fuzz_Base::TRange & CInt_fuzz_Base::GetRange

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 159 of file Int_fuzz_.cpp.

References CInt_fuzz_Base::CheckSelected(), CInt_fuzz_Base::e_Range, and CInt_fuzz_Base::m_object.

Referenced by CInt_fuzz::AssignTranslated(), CInt_fuzz::GetLabel(), variation::CHgvsParser::s_IntWithFuzzToStr(), CFlatSeqLoc::x_Add(), CRangeWithFuzz::x_AddFuzz(), x_Assign(), CGvfWriteRecord::x_AssignAttributeEndRange(), CGvfWriteRecord::x_AssignAttributeStartRange(), CFeatGlyph::x_DrawFeatureBar_sv(), variation_ref::CHgvsParser::x_IntWithFuzzToStr(), CMappingRange::x_Map_Fuzz(), and xgbload_number().

GetReal()

CUser_field_Base::C_Data::TReal CUser_field_Base::C_Data::GetReal ( void  ) const

inline

Get the variant data.

Returns

Copy of the variant data.

Definition at line 741 of file User_field_.hpp.

Referenced by CLDBlockGlyph::CLDBlockGlyph(), CRegistryFile::FromConfigFile(), CUser_field::GetDouble(), CSettingsSet::GetReal(), CPhyloSelectionSet::InitFromUserObject(), MakeCompartments(), RestoreModelAttributes(), CDemoSeqQaApp::Run(), s_PassesFilter(), s_ScanRecursive(), CBLASTParams::x_FromUserObject(), CBamRefSeqInfo::x_LoadRangesCov(), CGraphTrack::x_LoadSettings(), and CVcfWriter::x_WriteFeatureQual().

GetReals()

const CUser_field_Base::C_Data::TReals & CUser_field_Base::C_Data::GetReals ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 861 of file User_field_.hpp.

Referenced by CSettingsSet::GetRealVec(), CCleanup::s_AddNumToUserField(), and s_ScanRecursive().

GetSeason()

const CDate_std_Base::TSeason & CDate_std_Base::GetSeason ( void  ) const

inline

Get the Season member data.

Returns

Reference to the member data.

Definition at line 560 of file Date_std_.hpp.

References CDate_std_Base::CanGetSeason(), CDate_std_Base::m_Season, and CSerialObject::ThrowUnassigned().

Referenced by CDate_std::Compare(), CDate_std::GetDate(), and s_CompareDates().

GetSecond()

CDate_std_Base::TSecond CDate_std_Base::GetSecond ( void  ) const

inline

Get the Second member data.

Returns

Copy of the member data.

Definition at line 708 of file Date_std_.hpp.

References CDate_std_Base::CanGetSecond(), CDate_std_Base::m_Second, and CSerialObject::ThrowUnassigned().

Referenced by CDate_std::AsCTime(), CDate_std::Compare(), CDate_std::GetDate(), and CSeq_id_PDB_Info::x_NormalizeDate().

GetStd()

const CDate_Base::TStd & CDate_Base::GetStd

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 109 of file Date_.cpp.

References CDate_Base::CheckSelected(), CDate_Base::e_Std, and CDate_Base::m_object.

Referenced by AddDay(), AddMonth(), AddYear(), CDate::AsCTime(), BOOST_AUTO_TEST_CASE(), CheckDate(), pub_report::CheckDate(), pub_report::CollectDataArt(), pub_report::CollectDataGen(), CDate::Compare(), CProceedingsPanel::CreateControls(), CProceedingsChapterPanel::CreateControls(), CPublisherPanel::CreateControls(), get_lanl_date(), CDate::GetDate(), GetDateString(), GetDocSumLabel(), CApplyPubQualTreeItemData::GetVariables(), IsDateInPast(), CSeq_id_PDB_Info::Normalize(), fix_pub::PrintPub(), CCleanup::s_CleanupGenomeAssembly(), s_CompareDates(), s_FormatCitGen(), s_FormatYear(), s_IsDateEmpty(), CRelaxedLookupDlg::SetPubdesc(), pub_report::CSkipPubUnpublishedHook::SkipObject(), CAddSecondary::TransferDataToWindow(), CProceedingsPanel::TransferDataToWindow(), CProceedingsChapterPanel::TransferDataToWindow(), CPublisherPanel::TransferDataToWindow(), CAuthListValidator::validate(), CValidError_imp::ValidatePubArticleNoPMID(), CValidError_imp::x_DowngradeForMissingAffil(), and CMacroFunction_SetPubStatus::x_SetStatus().

GetStr() [1/4]

const CDate_Base::TStr & CDate_Base::GetStr ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 306 of file Date_.hpp.

References CDate_Base::CheckSelected(), CDate_Base::e_Str, and CDate_Base::m_string.

Referenced by CDate::AsCTime(), CheckDate(), CDate::Compare(), CDate::GetDate(), GetDateString(), ICitationBase::GetParenthesizedYear(), s_CompareDates(), s_FormatYear(), and CValidError_imp::ValidatePubArticleNoPMID().

GetStr() [2/4]

const CObject_id_Base::TStr & CObject_id_Base::GetStr ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 297 of file Object_id_.hpp.

References CObject_id_Base::CheckSelected(), CObject_id_Base::e_Str, and CObject_id_Base::m_string.

Referenced by CSeq_feat::AddExt(), CApplyFBOL::apply(), CRmvCddFeatDbxref::apply_to(), CBarcodeTool::ApplyDbxrefs(), CReorderStructuredComment::ApplyToCSeq_entry_user(), CRemoveGenomeProjectsDB::ApplyToUserObject(), CRemoveEmptyGenomeProjectsDB::ApplyToUserObject(), CRemoveBankitComment::ApplyToUserObject(), CRemoveDuplicateStructuredComment::ApplyToUserObject(), CRemoveAllStructuredComment::ApplyToUserObject(), CRemoveEmptyStructuredComment::ApplyToUserObject(), CModifyStructuredComment::ApplyToUserObject(), CBedFeatureRecord::AssignDisplayData(), CGffRecord::AssignSeqId(), CGvfWriteRecord::AssignSource(), CGvfWriteRecord::AssignType(), CObject_id::AsString(), BOOST_AUTO_TEST_CASE(), CBioseqIndex::CBioseqIndex(), CFlatFileTextItem::CFlatFileTextItem(), CComment_rule::CheckGeneralField(), CLocalToGeneralId::CLocalToGeneralId(), CObject_id::Compare(), CSeq_id::ComposeOSLT(), CPrimaryEdit::CPrimaryEdit(), CRemoveSeqId::CRemoveSeqId(), CSeq_id_Local_Info::CSeq_id_Local_Info(), CSeqIdGuesser::CSeqIdGuesser(), CSortableSeq_id::CSortableSeq_id(), CNewCleanup_imp::DbtagBC(), CUser_field::DeleteField(), CSequenceEditingEventHandler::DeleteSpecificStructuredComment(), descr_cmp(), ExtractGnomonModelNum(), CSeq_align::FindExt(), CSeq_feat::FindExt(), CSeqDBGiList::FindId(), CSeqDBNegativeList::FindId(), CSeq_id_General_Tree::FindMatch(), NMacroUtil::FindNcbiAutofixUserObject(), CSeq_id_Local_Tree::FindOrCreate(), CSeq_id_General_Tree::FindOrCreate(), CFlatSubmitterSeqidQVal::Format(), CFlatModelEvQVal::Format(), fta_build_ena_user_object(), fta_dblink_has_sra(), fta_get_project_user_object(), fta_remove_cleanup_user_object(), fta_sort_biosource(), fta_tsa_tls_comment_dblink_check(), GetAccessionAndDatabaseSource(), CWholeFileAnnotation::GetAndUseAnnot(), CDUpdater::GetBlastDefline(), CUser_object::GetCategory(), CCreateSeqHistForTpa::GetCreateSeqHistFromTpaCommand(), CField_type::GetDBLinkFieldFromUserObject(), GetDBLinkIDs(), CWriteUtil::GetDbTag(), CWriteUtil::GetDescriptor(), CValidErrorFormat::GetDescriptorContent(), CEditObjectSeq_desc::GetDescriptorType(), GetDirectLabel(), CFlatFileViewContext::GetEditObject(), CUser_object::GetExperimentType(), CSGUtils::GetFeatFetchDepth(), CBioseq_Info::GetFeatureFetchPolicy(), CUser_field::GetFieldRef(), CUser_object::GetFieldRef(), CUser_field::GetFieldsMap(), CWGSDataLoader_Impl::GetFileInfoByGeneral(), CCSRABlobId::GetGeneralIdType(), GetGeneralOrLocal(), CGenomeAnnotComment::GetGenomeBuildNumber(), CAlignFormatUtil::GetGnlID(), CSeqIdGuesser::GetIdStrings(), CObject_id::GetIdType(), CSeq_featHandler::GetLabel(), GetLabel(), CStructCommentSubpanel::GetLabelsFromSeq(), CGuiObjectInfoVariant::GetLinks(), CAnnotObject_Info::GetLocsTypes(), CWGSDb::GetMasterDescrType(), GetNewGeneralProtId(), GetNewLocalProtId(), CUser_object::GetObjectType(), CVDBBlastUtil::GetOIDFromVDBSeqId(), CSeq_id_Local_Info::GetPackedSeqId(), GetPrefixOrSuffixType(), CProductStringBuilder::GetProductString(), GetSegSetDblink(), CReadSharedObjectIdHookBase::GetSharedObject_id(), CCommentItem::GetStringForBankIt(), CWriteUtil::GetStringForModelEvidence(), CCommentItem::GetStringForRefSeqGenome(), CCommentItem::GetStringForRefTrack(), CCommentItem::GetStringForTLS(), CCommentItem::GetStringForTPA(), CCommentItem::GetStringForTSA(), CCommentItem::GetStringForWGS(), CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), GetTitle(), CSequenceTrack::GetTooltip(), CGuiObjectInfoVariant::GetToolTip(), CGuiObjectInfoVariation::GetToolTip(), CReadUtil::GetTrackValue(), CWriteUtil::GetUserObjectByType(), CBankITCommentField::GetVals(), CLocalIDField::GetVals(), CEditingActionBiosourceDbxref::GetValue(), CEditingActionFeatDbxref::GetValue(), CTextView::InitView(), CDiscrepancyContext::IsBGPipe(), IsConsensus(), CDBLinkField::IsDBLink(), CTable2AsnContext::IsDBLink(), CLocalIDField::IsEmpty(), CVariationNormalization::isFullyShifted(), IsGeneOntology(), CGenomeProjectField::IsGenomeProject(), CGenomeProjectField::IsGenomeProjectID(), IsLocalID(), IsMatchingIdMissing(), CEditingActionDescGenomeProjectId::IsSetValue(), CEditingActionDescStructCommDbName::IsSetValue(), CComment_rule::IsStructuredComment(), CValidError_align::IsTpaAlignment(), CSeqEntrySource::IsUnverified(), CValidator::IsValidDbxref(), isVarNormType(), isVersionsObject(), CFeatComparatorByLabel::Less(), CLoadStructComments::LoadWithAccessions(), Make_SeqID_String(), MakeCompartments(), CEditingActionDescUserObject::Modify(), CEditingActionDescStructCommFieldName::Modify(), CEditingActionDescLocalId::Modify(), CEditingActionDescComment::Modify(), OjectIdsAreEqual(), CSeqIdValidate::operator()(), SChildLess::operator()(), CSeq_id_General_Str_Info::Pack(), CSeq_id_General_Str_Info::Parse(), CSeq_id_General_Str_Info::TKey::ParseCaseVariant(), CSeq_id_General_PlainInfo::ParseCaseVariant(), CSeq_id_Local_Info::ParseCaseVariant(), SSNP_Info::ParseSeq_feat(), CTabularFormatter_BestPlacementGroup::Print(), CTabularFormatter_AssemblyInfo::Print(), CRelation::RelationFromUserObject(), CDUpdater::RemoveBlastDefline(), CSeq_feat::RemoveExt(), CFindASN1Dlg::ReplaceInDbxref(), CFindASN1Dlg::ReplaceInSubmit(), CEditingActionDescGenomeProjectId::ResetValue(), CEditingActionDescStructCommDbName::ResetValue(), CWGSClient::ResolveGeneral(), RestoreModelAttributes(), RestoreModelMethod(), CDemoSeqQaApp::Run(), CDemoApp::Run(), s_AddCDS(), s_AddTopLevelGenomicLinks(), s_AssignObject_id(), CCleanup::s_CleanupGeneOntology(), CCleanup::s_CleanupGenomeAssembly(), CCleanup::s_CleanupStructuredComment(), s_CountAccessions(), s_ExtractBlastDefline(), s_ExtractKeys(), s_FastaGetOriginalID(), s_FieldHasLabel(), s_FindLocalId(), s_FindUserObjectTypeRecursive(), s_Fingerprint_Object_id(), s_GeneralTagsMatch(), s_GetAlignmentTooltip(), s_GetAssemblyInfo(), s_GetBareId(), s_GetBitScore(), s_GetContentLabel(), s_GetEvalue(), s_GetFeatureIdLabel(), NSearchFeatPanel::s_GetFeatureLabel(), s_GetModelEvidance(), s_GetMrnaProteinLink(), s_GetOriginalID(), s_GetSRASeqMetadata(), s_GetUserObjectContent(), s_GetUserObjectType(), s_HasTpaUserObject(), s_IdXrefsNotReciprocal(), s_IsGnomonModel(), s_IsModelEvidanceUop(), s_IsReportableStructuredComment(), s_IsSuppressField(), s_IsTpa(), s_IsUserType(), CMacroFunction_SetStructCommDb::s_MoveSuffixToTheEnd(), s_PopulateUserObject(), CMacroFunction_RemoveQual::s_RemoveFields(), s_Render_Feat_Evidence(), s_ReplaceLocalId(), s_ScanRecursive(), s_SeqDescCompare(), s_UnpackUserField(), SeqDB_SimplifySeqid(), CStructuredCommentsReader::SeqIdMatchesCommentId(), SeqIdMatchesMaster(), CSeq_id::Set(), CObject_id::SetAsMatchingTo(), CUser_object::SetFieldRef(), CUser_field::SetFieldRef(), CGffAlignmentRecord::SetScore(), CGffBaseRecord::SetScore(), CValidError_imp::Setup(), CEditingActionDescStructCommDbName::SetValue(), sFeatureHasXref(), sGetFeatMapKey(), CPropagateDescriptors::ShouldStayInPlace(), sInheritScores(), sPrepareSeqAlign(), sx_GetReadId(), sx_MakeUniqueId(), TestCollidingAccessionFixes(), testNuclHitList(), CMacroFunction_AddDBLink::TheFunction(), CMacroFunction_ParseToStructComm::TheFunction(), CSequencingTechnologyPanel::TransferDataToWindow(), CStructuredCommentPanel::TransferDataToWindow(), CValidError_desc::ValidateDblink(), CValidError_imp::ValidateDbxref(), CValidError_bioseqset::ValidateNucProtSet(), CValidError_annot::ValidateSeqAnnot(), CValidError_bioseq::ValidateSeqDescContext(), CValidError_bioseq::ValidateSeqId(), CValidError_desc::ValidateUser(), CValidError_bioseq::ValidateWGSMaster(), CVDBBlastUtil::VDBIdType(), CFastaOstreamEx::x_AddDbxrefAttribute(), CFeatureItem::x_AddFTableDbxref(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddGoQuals(), CWriteDB_IsamIndex::x_AddLocal(), CFeatureTableReader_Imp::x_AddQualifierToImp(), CFeatureItem::x_AddQualsExt(), CFeatureItem::x_AddQualsRegion(), CFeatureItem::x_AddQualsVariation(), CWriteDB_IsamIndex::x_AddStringIds(), CWriteDB_IsamIndex::x_AddTraceIds(), CGuiObjectInfoSeq_align::x_AddUserObject(), CAlnTableDS::x_AdjustColumns(), CMultiAligner::x_AlignClusterQueries(), CMultiAligner::x_AlignFillerBlocks(), x_AlmostEquals(), CRemoveUnreviewed::x_ApplyToUserObject(), x_Assign(), CGvfWriteRecord::x_AssignAttributeID(), CGvfWriteRecord::x_AssignAttributeParent(), CGvfWriteRecord::x_AssignAttributesCustom(), CGvfWriteRecord::x_AssignAttributeVarType(), CBioseqContext::x_CheckForShowComments(), CFeatureGenerator::SImplementation::x_CheckMatch(), CEditSeqId::x_CollectChangedIds(), CSeq_id_Resolver__LRG::x_Create(), CInversionMergeAligner::x_CreateDiscAlignment(), CSNPSearchJob::x_DoSearch(), CSeq_id_General_Tree::x_FindInfo(), CSeq_id_Local_Tree::x_FindInfo(), CVectorScreen::x_FindLocalId(), CMultiAligner::x_FindRPSHits(), CTracebackSearchTestFixture::x_FindUsedGis(), CGencollIdMapper::x_FixImperfectId(), CDBSourceItem::x_FormatDBSourceID(), CCommentItem::x_GatherDescInfo(), CGenomeAnnotComment::x_GatherInfo(), CLocalIdComment::x_GatherInfo(), CFileIdComment::x_GatherInfo(), CGenomeProjectItem::x_GatherInfo(), CPrimaryItem::x_GatherInfo(), CGenbankGatherer::x_GatherTLS(), CGenbankGatherer::x_GatherTSA(), CGenbankGatherer::x_GatherWGS(), CAlignmentSmear::x_GetAnnotName(), CWriteDB_Impl::x_GetBioseqBinaryHeader(), CWriteDB_Impl::x_GetFastaReaderDeflines(), CFeatGlyph::x_GetFeatureId(), x_GetLabel_Content(), x_GetMolLocTypeUserObj(), CModifySeqId::x_GetRemoveOriginalIdCommand(), CMacroFunction_ParsedText::x_GetSpecialField(), x_GetTentativeName(), CCommonComponentScorer::x_GetUserCompList(), CViewGraphic::x_GetViewSettingsFromParams(), CFeatureGenerator::SImplementation::x_HandleCdsExceptions(), CFeatureGenerator::SImplementation::x_HandleRnaExceptions(), CFeatureItem::x_HasMethodtRNAscanSE(), x_HasTentativeName(), CReferenceItem::x_Init(), CBioseqIndex::x_InitDescs(), CStructuredCommentField::x_InsertFieldAtCorrectPosition(), CStructCommFieldValuePair::x_InsertFieldAtCorrectPosition(), CSplitDblinkQuals::x_IsDblinkObj(), CSeq_loc_Mapper::x_IsUCSCRandomChr(), CUser_object::x_IsUnreviewedType(), CUser_object::x_IsUnverifiedType(), CGenbankFormatter::x_LocusHtmlPrefix(), CId2ReaderBase::x_ProcessGetSeqIdSeqId(), CAlignFilter::x_Query_Op(), CSequenceUpdater::x_RemoveDescriptorsFromImportedProducts(), CNewCleanup_imp::x_RemoveEmptyUserObject(), CBioseqContext::x_SetAuthorizedAccess(), CBioseqContext::x_SetDataFromUserObjects(), CMultiAligner::x_SetDomainHits(), CBioseqContext::x_SetEncode(), CBioseqContext::x_SetFiletrackURL(), CDeflineGenerator::x_SetFlags(), CBioseqContext::x_SetId(), CSeq_id_Local_Tree::x_Unindex(), CSeq_id_General_Tree::x_Unindex(), CSingleFeatValidator::x_ValidateLocusTagGeneralMatch(), CValidError_desc::x_ValidateStructuredComment(), CVcfWriter::x_WriteFeatureFilter(), CVcfWriter::x_WriteFeatureId(), CVcfWriter::x_WriteFeatureInfo(), CVcfWriter::x_WriteFeatureQual(), CGff3FlybaseWriter::xAssignAlignmentDensegScores(), CGff3FlybaseWriter::xAssignAlignmentSplicedScores(), CGff2Writer::xAssignFeatureAttributesGoMarkup(), CSrcWriter::xGatherDb(), CSrcWriter::xGatherTaxonId(), CFeatTableEdit::xGenerateTranscriptOrProteinId(), CSrcWriter::xGetOriginalId(), CFeatTableEdit::xRenameFeatureId(), CWiggleWriter::xWriteSingleGraphFixedStep(), and CWiggleWriter::xWriteTrackLine().

GetStr() [3/4]

const CPerson_id_Base::TStr & CPerson_id_Base::GetStr ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 391 of file Person_id_.hpp.

References CPerson_id_Base::CheckSelected(), CPerson_id_Base::e_Str, and CPerson_id_Base::m_string.

Referenced by pub_report::GetAuthorsFromList(), GetAuthorString(), CPerson_id::GetLabel(), CAuthor::GetLabelV2(), pub_report::GetNameFromStdName(), HasAuthor(), CValidError_imp::HasName(), SAuthorEmpty::operator()(), CFindASN1Dlg::ReplaceInAuthor(), and s_GetAuthorMatchString().

GetStr() [4/4]

const CUser_field_Base::C_Data::TStr & CUser_field_Base::C_Data::GetStr ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 694 of file User_field_.hpp.

Referenced by CLBLASTObjectLoader::AddDataLoader(), CTableAnnotDataSource::AddSeqLoc(), CTableAnnotDataSource::AddSnpSeqLoc(), CChangeStructuredCommentKeyword::ApplyToCSeq_entry_user(), CReorderStructuredComment::ApplyToCSeq_entry_user(), CRemoveDuplicateStructuredComment::ApplyToUserObject(), CGvfWriteRecord::AssignSource(), CGvfWriteRecord::AssignType(), BOOST_AUTO_TEST_CASE(), CComment_rule::CheckFieldValue(), CComment_rule::CheckGeneralField(), CTableAnnotDataSource::CreateFeature(), CTableAnnotDataSource::CreateSnpFeature(), CTableAnnotDataSource::CreateSnps(), CSequenceEditingEventHandler::DeleteSpecificStructuredComment(), CGBDocument::DetachDataLoader(), CTableAnnotDataSource::FindLocations(), CFlatModelEvQVal::Format(), CRegistryFile::FromConfigFile(), CDockLayoutTree::CNode::FromUserObject(), CBLASTParams::FromUserObject(), CBioseq_Info::GetFeatureFetchPolicy(), GetFieldValueAsString(), CGenomeAnnotComment::GetGenomeBuildNumber(), GetHasFrameShift(), GetHasOrderAssignment(), CClonePlacementGlyph::GetLabel(), CUserFeatHandler::GetLabel(), NSnp::GetLength(), CLBLASTObjectLoader::GetLoaderName(), GetLowTrace(), CGC_Replicon::GetMoleculeLabel(), CGC_Replicon::GetMoleculeLocation(), CGC_Replicon::GetMoleculeType(), CProductStringBuilder::GetProductString(), CUser_object::GetRefGeneTrackingStatus(), CCommentItem::GetRefTrackStatus(), CSGSeqGraphJob::GetSeqtableAnnots(), CSettingsSet::GetString(), CUser_field::GetString(), CCommentItem::GetStringForBankIt(), CWriteUtil::GetStringForModelEvidence(), CCommentItem::GetStringForRefSeqGenome(), CCommentItem::GetStringForRefTrack(), CCommentItem::GetStringForTLS(), CCommentItem::GetStringForTSA(), CCommentItem::GetStringForWGS(), CConstSageData::GetTag(), CFlatGoQVal::GetTextString(), CSequenceTrack::GetTooltip(), CGuiObjectInfoSeq_align::GetToolTip(), CGuiObjectInfoPrimer::GetToolTip(), CGuiObjectInfoVariant::GetToolTip(), CGuiObjectInfoVariation::GetToolTip(), CReadUtil::GetTrackValue(), CBankITCommentField::GetVals(), CLocalIDField::GetVals(), CEditingActionDescGenomeProjectId::GetValue(), CEditingActionDescStructCommDbName::GetValue(), CSeqTableReader::Init(), CPhyloSelectionSet::InitFromUserObject(), CDiscrepancyContext::IsBGPipe(), CIntronGlyph::IsConsensus(), CLocalIDField::IsEmpty(), IsMatchingIdMissing(), CComment_rule::IsValid(), CTableImportColumn::LoadAsn(), CPhyTreeView::OnBioTreeChanged(), SSNP_Info::ParseSeq_feat(), CTabularFormatter_AssemblyInfo::Print(), CRelation::RelationFromUserObject(), CRegistryReadView::ResolveField(), RestoreModelAttributes(), RestoreModelMethod(), s_CheckTraceMateAlign(), CCleanup::s_CleanupGenomeAssembly(), CCleanup::s_CleanupStructuredComment(), s_FastaGetOriginalID(), s_FieldHasNonBlankValue(), s_GetAssemblyInfo(), s_GetBoxStyle(), s_GetEncodeValues(), s_GetModelEvidance(), s_GetMrnaProteinLink(), s_GetOriginalID(), s_GetSpliceSite(), s_HasRefSeqPGAPStructuredComment(), s_IsGenomeAnnotationStart(), s_IsGnomonModel(), CMacroFunction_RemoveQual::s_RemoveFields(), s_Render_Feat_Evidence(), s_ScanRecursive(), s_SeqDescCompare(), CDBLinkField::SetVal(), CStructuredCommentField::SetVal(), sGetMethodFromModelEvidence(), CMacroFunction_ParseToStructComm::TheFunction(), CCSraAlignIterator::x_AddField(), CGuiObjectInfoSeq_align::x_AddUserObject(), x_AlmostEquals(), CGvfWriteRecord::x_AssignAttributeID(), CGvfWriteRecord::x_AssignAttributeParent(), CGvfWriteRecord::x_AssignAttributeVarType(), CBioseqContext::x_CheckForShowComments(), CSNPSearchJob::x_DoSearch(), CBamUIDataSource::x_GetBamInputs(), CDensegGraphicDataSource::x_GetCigarStr(), CBamUIDataSource::x_GetCSraInputs(), CDensegGraphicDataSource::x_GetMismatchStr(), CUser_object::x_GetRefGeneTrackingField(), CModifySeqId::x_GetRemoveOriginalIdCommand(), CBamUIDataSource::x_GetSraAccession(), CBamUIDataSource::x_GetSrzAccession(), CCommonComponentScorer::x_GetUserCompList(), CFeatureItem::x_HasMethodtRNAscanSE(), CValidError_bioseq::x_HasPGAPStructuredComment(), CBioseqIndex::x_InitDescs(), CMiscSeqTable::x_InterpretColumnProperties(), CUser_object::x_IsUnreviewedType(), CUser_object::x_IsUnverifiedType(), CLDBlockJob::x_LoadFtable(), CSGAnnotJob::x_PercentileButNotMax(), CAlignFilter::x_Query_Op(), CBioseqContext::x_SetAuthorizedAccess(), CBioseqContext::x_SetDataFromUserObjects(), CBioseqContext::x_SetFiletrackURL(), CDeflineGenerator::x_SetFlags(), CAutoDefOptions::x_SetSuppressedFeatures(), CValidError_desc::x_ValidateStructuredCommentSuffix(), CVcfWriter::x_WriteFeatureFilter(), CVcfWriter::x_WriteFeatureInfo(), CGtfWriter::xAssignFeatureMethod(), CSrcWriter::xGetOriginalId(), and CWiggleWriter::xWriteTrackLine().

GetStrs()

const CUser_field_Base::C_Data::TStrs & CUser_field_Base::C_Data::GetStrs ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 821 of file User_field_.hpp.

Referenced by CollectUserField(), GetDBLinkIDs(), GetFieldValueAsString(), CSettingsSet::GetStringVec(), CDUpdater::reformatBioseq(), s_AddNewDBlinkValue(), s_AddNewUserField(), CCleanup::s_AddNumToUserField(), s_FieldHasNonBlankValue(), s_GatherExistingValues(), CMacroFunction_RemoveQual::s_RemoveFields(), s_ScanRecursive(), s_SetDBLinkFieldVals(), CDBLinkField::SetVal(), CEditingActionDescUserObject::SetValue(), CValidError_desc::ValidateDblink(), CSplitDblinkQuals::x_ConvertStrsToStrs(), CTracebackSearchTestFixture::x_FindUsedGis(), CGenomeProjectItem::x_GatherInfo(), CBioseqContext::x_SetFiletrackURL(), CAutoDefOptions::x_SetSuppressedFeatures(), CVcfWriter::x_WriteFeatureGenotypeData(), CVcfWriter::x_WriteInit(), and CVcfWriter::x_WriteMeta().

GetSuffix()

const CName_std_Base::TSuffix & CName_std_Base::GetSuffix ( void  ) const

inline

Get the Suffix member data.

Returns

Reference to the member data.

Definition at line 657 of file Name_std_.hpp.

References CName_std_Base::CanGetSuffix(), CName_std_Base::m_Suffix, and CSerialObject::ThrowUnassigned().

Referenced by CValidator::BadCharsInAuthor(), CName_std::ExtractSuffixFromLastName(), CPubField::GetAuthorField(), CPerson_id::GetLabel(), CAuthor::GetLabelV2(), CEditingActionDescAuthorSuffix::GetValue(), CFindASN1Dlg::ReplaceInAuthor(), CCleanup::s_CleanupNameStdBC(), CPubField::SetAuthorField(), CContactPanel::TransferDataToWindow(), CSubmitterPanel_Depr::TransferDataToWindow(), CValidError_imp::ValidateAuthorList(), and CStripAuthorSuffix::x_ApplyToCAuth().

GetTag()

const CDbtag_Base::TTag & CDbtag_Base::GetTag ( void  ) const

inline

Get the Tag member data.

Returns

Reference to the member data.

Definition at line 267 of file Dbtag_.hpp.

References CDbtag_Base::m_Tag, and CDbtag_Base::ResetTag().

Referenced by BOOST_AUTO_TEST_CASE(), CBioseqIndex::CBioseqIndex(), CGeneralToLocalId::CGeneralToLocalId(), CDbtag::Compare(), CSeq_id::ComposeOSLT(), CSeqIdGuesser::CSeqIdGuesser(), CSortableSeq_id::CSortableSeq_id(), CNewCleanup_imp::DbtagBC(), ExtractGnomonModelNum(), CSeq_id_General_Tree::FindInfo(), CSeq_id_General_Tree::FindMatch(), CSeq_id_General_Tree::FindOrCreate(), CFlatSubmitterSeqidQVal::Format(), GetAccessionAndDatabaseSource(), CWholeFileAnnotation::GetAndUseAnnot(), GetCDDPssmIdFromSeqId(), CWriteUtil::GetDbTag(), GetDirectLabel(), CValidErrorFormat::GetFeatureIdLabel(), CWGSDataLoader_Impl::GetFileInfoByGeneral(), variation::GetFocusLocusIDs(), CScoreLookup::GetGeneId(), CCSRABlobId::GetGeneralIdType(), GetGeneralOrLocal(), CAlignFormatUtil::GetGnlID(), CSeqIdGuesser::GetIdStrings(), CSeq_featHandler::GetLabel(), GetLabel(), CDbtag::GetLabel(), CGuiObjectInfoVariant::GetLinks(), GetNewGeneralProtId(), CVDBBlastUtil::GetOIDFromVDBSeqId(), CSeq_id_General_PlainInfo::GetPackedSeqId(), CScope_Impl::GetTaxId(), CScope_Impl::GetTaxIds(), GetTitle(), CGuiObjectInfoVariant::GetToolTip(), CGuiObjectInfoVariation::GetToolTip(), CGeneralIDField::GetVal(), CEditingActionBiosourceDbxref::GetValue(), CEditingActionFeatDbxref::GetValue(), CEditingActionGeneralIdTag::GetValue(), CTraceDataProxy::HasData(), CSGTraceGraphDS::HasData(), CValidator::IsValidDbxref(), CTraceDataProxy::LoadData(), CSGTraceGraphDS::LoadData(), CId1Reader::LoadSeq_idSeq_ids(), CDbtag::Match(), CSeq_id_General_Id_Info::Pack(), CSeq_id_General_Str_Info::Pack(), CSeq_id_General_Str_Info::Parse(), CSeq_id_General_Str_Info::TKey::ParseCaseVariant(), CSeq_id_General_PlainInfo::ParseCaseVariant(), SSNP_Info::ParseSeq_feat(), CTabularFormatter_SeqId::Print(), CFindASN1Dlg::ReplaceInDbxref(), Residue::Residue(), CWGSClient::ResolveGeneral(), s_AddTopLevelGenomicLinks(), s_AssignDbtag(), variation::CVariationUtil::s_AttachGeneIDdbxref(), s_CheckTraceMateAlign(), s_Fingerprint_Dbtag(), s_GeneralTagsMatch(), CMacroFunction_MakeBoldXrefs::s_GetBarcodeId(), s_GetBareId(), s_GetContentLabel(), NSearchFeatPanel::s_GetFeatureLabel(), variation::CVariationUtil::CVariantPropertiesIndex::s_GetGeneID(), s_GetSRASeqMetadata(), s_GetVariationDbtagLabel(), SeqDB_SimplifySeqid(), CStructuredCommentsReader::SeqIdMatchesCommentId(), CSeq_id::Set(), CDbtag::SetAsMatchingTo(), sx_GetReadId(), TestCollidingAccessionFixes(), CValidError_imp::ValidateDbxref(), CValidError_bioseq::ValidateSeqId(), CVDBBlastUtil::VDBIdType(), CFastaOstreamEx::x_AddDbxrefAttribute(), CFeatureItem::x_AddFTableDbxref(), CFeatureItem::x_AddQualProteinId(), CFeatureItem::x_AddQualsVariation(), CWriteDB_IsamIndex::x_AddStringIds(), CWriteDB_IsamIndex::x_AddTraceIds(), x_Assign(), CEditSeqId::x_CollectChangedIds(), CDeltaBlastTestFixture::x_CountNumberUniqueIds(), CSeq_id_Resolver__LRG::x_Create(), CSNPSearchJob::x_DoSearch(), CSeq_id_General_Tree::x_FindInfo(), CCommentItem::x_GatherDescInfo(), CGsdbComment::x_GatherInfo(), CFeatGlyph::x_GetFeatureId(), CSeqDBVol::x_GetHdrAsn1(), x_GetLabel_Content(), CReferenceItem::x_Init(), CGeneModelTrack::x_NeedHighlight(), CId2ReaderBase::x_ProcessGetBlobId(), CId2ReaderBase::x_ProcessGetSeqIdSeqId(), CGeneModelFeatJob::x_ProcessLandMarkFeatures(), CDeflineGenerator::x_SetFlags(), CSeq_id_General_Tree::x_Unindex(), CSingleFeatValidator::x_ValidateLocusTagGeneralMatch(), CSeq_id::x_WriteContentAsFasta(), CVcfWriter::x_WriteFeatureId(), CVcfWriter::x_WriteFeatureInfo(), and XISAGappedSeqLoc().

GetTitle()

const CName_std_Base::TTitle & CName_std_Base::GetTitle ( void  ) const

inline

Get the Title member data.

Returns

Reference to the member data.

Definition at line 704 of file Name_std_.hpp.

References CName_std_Base::CanGetTitle(), CName_std_Base::m_Title, and CSerialObject::ThrowUnassigned().

Referenced by CFindASN1Dlg::ReplaceInAuthor().

GetType()

const CUser_object_Base::TType & CUser_object_Base::GetType ( void  ) const

inline

Get the Type member data.

Returns

Reference to the member data.

Definition at line 305 of file User_object_.hpp.

References CUser_object_Base::m_Type, and CUser_object_Base::ResetType().

Referenced by CSeq_feat::AddExt(), CRmvCddFeatDbxref::apply_to(), CReorderStructuredComment::ApplyToCSeq_entry_user(), CRemoveGenomeProjectsDB::ApplyToUserObject(), CRemoveEmptyGenomeProjectsDB::ApplyToUserObject(), CRemoveBankitComment::ApplyToUserObject(), CRemoveDuplicateStructuredComment::ApplyToUserObject(), CRemoveAllStructuredComment::ApplyToUserObject(), CRemoveEmptyStructuredComment::ApplyToUserObject(), CModifyStructuredComment::ApplyToUserObject(), CBedFeatureRecord::AssignDisplayData(), CGvfWriteRecord::AssignSource(), CGvfWriteRecord::AssignType(), BOOST_AUTO_TEST_CASE(), CFlatFileTextItem::CFlatFileTextItem(), CPrimaryEdit::CPrimaryEdit(), CSequenceEditingEventHandler::DeleteSpecificStructuredComment(), descr_cmp(), CSubmissionWizard::ExtractDescriptor(), NMacroUtil::FindNcbiAutofixUserObject(), fta_dblink_has_sra(), fta_remove_cleanup_user_object(), fta_tsa_tls_comment_dblink_check(), CDUpdater::GetBlastDefline(), CUser_object::GetCategory(), CCreateSeqHistForTpa::GetCreateSeqHistFromTpaCommand(), CField_type::GetDBLinkFieldFromUserObject(), GetDBLinkIDs(), CWriteUtil::GetDescriptor(), CValidErrorFormat::GetDescriptorContent(), CEditObjectSeq_desc::GetDescriptorType(), CFlatFileViewContext::GetEditObject(), CUser_object::GetExperimentType(), CSGUtils::GetFeatFetchDepth(), CBioseq_Info::GetFeatureFetchPolicy(), CGenomeAnnotComment::GetGenomeBuildNumber(), CUserFeatHandler::GetLabel(), CStructCommentSubpanel::GetLabelsFromSeq(), CAnnotObject_Info::GetLocsTypes(), CWGSDb::GetMasterDescrType(), CSeq_annot_SplitInfo::GetName(), CUser_object::GetObjectType(), CProductStringBuilder::GetProductString(), GetSegSetDblink(), CProjectItemExtra::GetStr(), CCommentItem::GetStringForBankIt(), CCommentItem::GetStringForRefSeqGenome(), CCommentItem::GetStringForRefTrack(), CCommentItem::GetStringForTLS(), CCommentItem::GetStringForTPA(), CCommentItem::GetStringForTSA(), CCommentItem::GetStringForWGS(), CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), CSequenceTrack::GetTooltip(), CReadUtil::GetTrackValue(), CWriteUtil::GetUserObjectByType(), CBankITCommentField::GetVals(), CTextView::InitView(), CDiscrepancyContext::IsBGPipe(), CDBLinkField::IsDBLink(), CTable2AsnContext::IsDBLink(), CVariationNormalization::isFullyShifted(), IsGeneOntology(), CGenomeProjectField::IsGenomeProject(), CEditingActionDescGenomeProjectId::IsSetValue(), CEditingActionDescStructCommDbName::IsSetValue(), CComment_rule::IsStructuredComment(), CValidError_align::IsTpaAlignment(), CSeqEntrySource::IsUnverified(), isVarNormType(), isVersionsObject(), MakeCompartments(), CEditingActionDescStructCommFieldName::Modify(), CPhyTreeView::OnSomethingEdited(), SSNP_Info::ParseSeq_feat(), CChangePhyloSelectionSetCmd::PerformEdit(), CTabularFormatter_BestPlacementGroup::Print(), CTabularFormatter_AssemblyInfo::Print(), CRelation::RelationFromUserObject(), CDUpdater::RemoveBlastDefline(), CEditingActionDescGenomeProjectId::ResetValue(), CEditingActionDescStructCommDbName::ResetValue(), RestoreModelAttributes(), RestoreModelMethod(), CDemoApp::Run(), CCleanup::s_CleanupGeneOntology(), s_ExtractBlastDefline(), s_FastaGetOriginalID(), s_FindUserObjectTypeRecursive(), s_GetContentLabel(), s_GetMrnaProteinLink(), s_GetOriginalID(), s_GetUserObjectType(), s_HasTpaUserObject(), s_IdXrefsNotReciprocal(), s_IsGnomonModel(), s_IsGoodDescr(), s_IsModelEvidanceUop(), s_IsReportableStructuredComment(), s_IsTpa(), s_IsUserType(), s_PopulateUserObject(), CMacroFunction_RemoveQual::s_RemoveFields(), s_Render_Feat_Evidence(), s_SeqDescCompare(), CProjectItemExtra::SetStr(), CValidError_imp::Setup(), CEditingActionDescStructCommDbName::SetValue(), CPropagateDescriptors::ShouldStayInPlace(), CValidError_desc::ValidateDblink(), CValidError_bioseqset::ValidateNucProtSet(), CValidError_bioseq::ValidateSeqDescContext(), CValidError_desc::ValidateUser(), CValidError_bioseq::ValidateWGSMaster(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddQualsExt(), CFeatureItem::x_AddQualsRegion(), CRemoveUnreviewed::x_ApplyToUserObject(), CSubmissionWizard::x_ApplyUserDescriptorToRecord(), CGvfWriteRecord::x_AssignAttributeID(), CGvfWriteRecord::x_AssignAttributeParent(), CGvfWriteRecord::x_AssignAttributesCustom(), CGvfWriteRecord::x_AssignAttributeVarType(), CBioseqContext::x_CheckForShowComments(), CTracebackSearchTestFixture::x_FindUsedGis(), CCommentItem::x_GatherDescInfo(), CGenomeAnnotComment::x_GatherInfo(), CGenomeProjectItem::x_GatherInfo(), CPrimaryItem::x_GatherInfo(), CGenbankGatherer::x_GatherTLS(), CGenbankGatherer::x_GatherTSA(), CCommentItem::x_GatherUserObjInfo(), CGenbankGatherer::x_GatherWGS(), CAlignmentSmear::x_GetAnnotName(), CWriteDB_Impl::x_GetBioseqBinaryHeader(), CWriteDB_Impl::x_GetFastaReaderDeflines(), x_GetMolLocTypeUserObj(), x_GetTentativeName(), CCommonComponentScorer::x_GetUserCompList(), CFeatureItem::x_HasMethodtRNAscanSE(), x_HasTentativeName(), CBioseqIndex::x_InitDescs(), CSplitDblinkQuals::x_IsDblinkObj(), CGenbankFormatter::x_LocusHtmlPrefix(), CAlignFilter::x_Query_Op(), CSequenceUpdater::x_RemoveDescriptorsFromImportedProducts(), CNewCleanup_imp::x_RemoveEmptyUserObject(), CBioseqContext::x_SetAuthorizedAccess(), CBioseqContext::x_SetDataFromUserObjects(), CBioseqContext::x_SetEncode(), CBioseqContext::x_SetFiletrackURL(), CDeflineGenerator::x_SetFlags(), CBioseqContext::x_SetId(), CSeq_annot_Info::x_UpdateName(), CValidError_desc::x_ValidateStructuredComment(), CVcfWriter::x_WriteFeatureFilter(), CVcfWriter::x_WriteFeatureInfo(), CVcfWriter::x_WriteFeatureQual(), CSrcWriter::xGetOriginalId(), and CWiggleWriter::xWriteTrackLine().

GetYear()

CDate_std_Base::TYear CDate_std_Base::GetYear ( void  ) const

inline

Get the Year member data.

Returns

Copy of the member data.

Definition at line 426 of file Date_std_.hpp.

References CDate_std_Base::CanGetYear(), CDate_std_Base::m_Year, and CSerialObject::ThrowUnassigned().

Referenced by AddDay(), AddMonth(), AddYear(), CDate_std::AsCTime(), BOOST_AUTO_TEST_CASE(), CheckCollectionDate(), CDate_std::Compare(), CProceedingsPanel::CreateControls(), CProceedingsChapterPanel::CreateControls(), CPublisherPanel::CreateControls(), get_s_date(), CDate_std::GetDate(), GetDocSumLabel(), GetEmblDate(), fix_pub::PrintPub(), s_CompareDates(), s_FormatCitGen(), s_FormatYear(), CRelaxedLookupDlg::SetPubdesc(), CAddSecondary::TransferDataToWindow(), CProceedingsPanel::TransferDataToWindow(), CProceedingsChapterPanel::TransferDataToWindow(), CPublisherPanel::TransferDataToWindow(), CAuthListValidator::validate(), CValidError_imp::ValidatePubArticleNoPMID(), CId1FetchApp::WriteHistoryTable(), CValidError_imp::x_DowngradeForMissingAffil(), CSeq_id_PDB_Info::x_NormalizeDate(), CMacroFunction_SetPubStatus::x_SetStatus(), and XDateCheck().

IsAlt()

bool CInt_fuzz_Base::IsAlt ( void  ) const

inline

Check if variant Alt is selected.

Alt type is defined as 'typedef list< TSeqPos > TAlt'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 663 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::e_Alt, and CInt_fuzz_Base::m_choice.

IsBool()

bool CUser_field_Base::C_Data::IsBool ( void  ) const

inline

Check if variant Bool is selected.

Bool type is defined as 'typedef bool TBool'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 762 of file User_field_.hpp.

Referenced by CSeqUtils::GetAnnotShown(), CUser_object::GetRefGeneTrackingGenerated(), CTableImportDataSource::ImportTableParms(), CPhyloSelectionSet::InitFromUserObject(), CPhyTreeView::InitView(), CVariationNormalization::isFullyShifted(), CTableDelimiterRules::LoadAsn(), CTableImportColumn::LoadAsn(), CPhyTreeView::OnSomethingEdited(), CDemoSeqQaApp::Run(), and s_IsMatchById().

IsConsortium()

bool CPerson_id_Base::IsConsortium ( void  ) const

inline

Check if variant Consortium is selected.

Consortium type is defined as 'typedef string TConsortium'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 405 of file Person_id_.hpp.

References CPerson_id_Base::e_Consortium, and CPerson_id_Base::m_choice.

Referenced by fix_pub::ExtractConsortiums(), CPubField::GetAuthorField(), HasAuthor(), CValidError_imp::HasName(), CAuthorNamesPanel::IsAuthorEmpty(), CEditingActionDescAuthorConsortium::IsSetValue(), fix_pub::PrintPub(), CFindASN1Dlg::ReplaceInAuthor(), s_GetAuthorMatchString(), CPubField::SetAuthorField(), CReferenceItem::x_AddAuthors(), CRemoveAuthorConsortium::x_ApplyToCAuth(), and CSrcWriter::xGather().

IsDbtag()

bool CPerson_id_Base::IsDbtag ( void  ) const

inline

Check if variant Dbtag is selected.

Dbtag type is defined as 'typedef CDbtag TDbtag'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 353 of file Person_id_.hpp.

References CPerson_id_Base::e_Dbtag, and CPerson_id_Base::m_choice.

Referenced by CFindASN1Dlg::ReplaceInAuthor().

IsFields()

bool CUser_field_Base::C_Data::IsFields ( void  ) const

inline

Check if variant Fields is selected.

Fields type is defined as 'typedef vector< CRef< CUser_field > > TFields'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 895 of file User_field_.hpp.

Referenced by ClearGoTermValue(), CUser_field::DeleteField(), CFlatGoQVal::Format(), CUser_field::GetFieldRef(), CUser_object::GetRefGeneTrackingAssembly(), CUser_object::GetRefGeneTrackingIdenticalTo(), CCommentItem::GetStringForTPA(), CUser_object::CRefGeneTrackingAccession::MakeAccessionFromUserField(), CCleanup::s_CleanupGeneOntology(), s_CountAccessions(), s_GetAssemblyInfo(), s_GetModelEvidance(), CUser_field::SetFieldRef(), CRegistryFile::SetFieldToValue(), CRegistryWriteView::SetFieldToValue(), SetGoTermValue(), CRefGeneTrackLocListPanel::TransferDataFromWindow(), CFeatureItem::x_AddQualsExt(), CGuiObjectInfoSeq_align::x_AddUserObject(), CRegistryReadView::x_GetKeys(), CAutoDefOptions::x_MakeModifierList(), CSeqTableSetExt::x_SetField(), CAutoDefOptions::x_SetModifierList(), and CGff2Writer::xAssignFeatureAttributesGoMarkup().

IsId()

bool CObject_id_Base::IsId ( void  ) const

inline

Check if variant Id is selected.

Id type is defined as 'typedef int TId'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 264 of file Object_id_.hpp.

References CObject_id_Base::e_Id, and CObject_id_Base::m_choice.

Referenced by CThreeFeatRecord::AddFeature(), AddToFeatureIdColumn(), subfuse::CSubmissionCollector::AdjustLocalIds(), AdjustSingleFeature(), CApplyFBOL::apply(), CBarcodeTool::ApplyDbxrefs(), CGffRecord::AssignSeqId(), BOOST_AUTO_TEST_CASE(), CBioseqIndex::CBioseqIndex(), CGeneralToLocalId::CGeneralToLocalId(), CLocalToGeneralId::CLocalToGeneralId(), CSeq_id::ComposeOSLT(), CBlobSplitterImpl::CopySkeleton(), CRemoveSeqId::CRemoveSeqId(), CSeqIdGuesser::CSeqIdGuesser(), CSortableSeq_id::CSortableSeq_id(), CSeqDBGiList::FindId(), CSeqDBNegativeList::FindId(), CSeq_id_General_Tree::FindMatch(), CSeq_id_General_Tree::FindOrCreate(), FixFeatureIdsForUpdates(), GetAccessionAndDatabaseSource(), GetCDDPssmIdFromSeqId(), CWriteUtil::GetDbTag(), CUser_field::GetFieldRef(), GetGeneralOrLocal(), CObject_id::GetGi(), CAlignFormatUtil::GetGnlID(), GetIdField(), CSeqIdGuesser::GetIdStrings(), CSeq_featHandler::GetLabel(), CGuiObjectInfoVariant::GetLinks(), CAnnotObject_Info::GetLocsTypes(), CSeq_id_General_PlainInfo::GetPackedSeqId(), CScope_Impl::GetTaxId(), CScope_Impl::GetTaxIds(), CGuiObjectInfoVariant::GetToolTip(), CEditingActionBiosourceDbxref::GetValue(), CEditingActionFeatDbxref::GetValue(), CTraceDataProxy::HasData(), CSGTraceGraphDS::HasData(), CObject_id::IsGi(), IsLocalID(), CValidator::IsValidDbxref(), CFeatComparatorByLabel::Less(), CTraceDataProxy::LoadData(), CSGTraceGraphDS::LoadData(), Make_SeqID_String(), SChildLess::operator()(), CSeq_id_General_PlainInfo::ParseCaseVariant(), CFeaturePropagator::PropagateFeatureList(), RemapOtherProtFeats(), Residue::Residue(), variation::CVariationUtil::s_AttachGeneIDdbxref(), s_FindHighestFeatId(), CCreateGeneModelTask::s_FindHighestFeatId(), s_GeneralTagsMatch(), s_GetAlignmentTooltip(), s_GetBareId(), s_GetFeatureIdLabel(), NSearchFeatPanel::s_GetFeatureLabel(), s_IsRelated(), CFixFeatureId::s_ReassignFeatureIds(), s_UpdateFeatureId(), CIdentifiersPanel::SetIdXrefs(), sFeatureHasXref(), sInheritScores(), CValidError_imp::Validate(), CValidError_imp::ValidateDbxref(), CValidError_desc::ValidateUser(), CFastaOstreamEx::x_AddDbxrefAttribute(), CWriteDB_IsamIndex::x_AddTraceIds(), CWriteDB_Impl::x_BuildDeflinesFromBioseq(), CEditSeqId::x_CollectChangedIds(), CSeq_id_General_Tree::x_FindInfo(), CVectorScreen::x_FindLocalId(), CCommentItem::x_GatherDescInfo(), CGsdbComment::x_GatherInfo(), CFeatGlyph::x_GetFeatureId(), x_GetLabel_Content(), CFeatureGenerator::SImplementation::x_HandleCdsExceptions(), CFeatureGenerator::SImplementation::x_HandleRnaExceptions(), CMultiAlnPrinter::x_PrintFastaPlusGaps(), CId2ReaderBase::x_ProcessGetBlobId(), CId2ReaderBase::x_ProcessGetSeqIdSeqId(), CGeneModelFeatJob::x_ProcessLandMarkFeatures(), CCleanupHugeAsnReader::x_RecordFeatureId(), CDeflineGenerator::x_SetFlags(), CSeq_id_Local_Tree::x_Unindex(), CSeq_id_General_Tree::x_Unindex(), CVcfWriter::x_WriteFeatureInfo(), and CThreeFeatManager::xFindExistingRecord().

IsInt()

bool CUser_field_Base::C_Data::IsInt ( void  ) const

inline

Check if variant Int is selected.

Int type is defined as 'typedef int TInt'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 708 of file User_field_.hpp.

Referenced by CRemoveEmptyGenomeProjectsDB::ApplyToUserObject(), BOOST_AUTO_TEST_SUITE_END(), CComment_rule::CheckFieldValue(), CComment_rule::CheckGeneralField(), CFlatModelEvQVal::Format(), CSGUtils::GetFeatFetchDepth(), CSeq_annot_SplitInfo::GetName(), CFlatGoQVal::GetPubmedId(), CBlastQuerySourceBioseqSet::GetSegmentInfo(), CWriteUtil::GetStringForModelEvidence(), CGuiObjectInfoSeq_align::GetToolTip(), CEditingActionDescGenomeProjectId::GetValue(), CTableImportDataSource::ImportTableParms(), CPhyloSelectionSet::InitFromUserObject(), CPhyTreeView::InitView(), CComment_rule::IsValid(), CTableDelimiterRules::LoadAsn(), CTableImportColumn::LoadAsn(), CPhyTreeView::OnSomethingEdited(), CDemoSeqQaApp::Run(), s_CheckTraceMateAlign(), s_GetAssemblyInfo(), s_GetModelEvidance(), s_GetSegmentFlags(), CBedWriter::WriteAnnot(), CGuiObjectInfoSeq_align::x_AddUserObject(), CCommonComponentScorer::x_GetUserCompList(), and CSeq_annot_Info::x_UpdateName().

IsInts()

bool CUser_field_Base::C_Data::IsInts ( void  ) const

inline

Check if variant Ints is selected.

Ints type is defined as 'typedef vector< int > TInts'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 835 of file User_field_.hpp.

Referenced by CPhyloSelectionSet::InitFromUserObject(), CTableDelimiterRules::LoadAsn(), and s_GetModelEvidance().

IsLim()

bool CInt_fuzz_Base::IsLim ( void  ) const

inline

Check if variant Lim is selected.

Lim type is defined as 'typedef ELim TLim'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 636 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::e_Lim, and CInt_fuzz_Base::m_choice.

Referenced by CConvertGapsBySize::apply(), CCombineAdjacentGaps::apply_impl(), CSeq_loc::ChangeToPackedInt(), CSeq_loc_Conversion::ConvertInterval(), CSeq_loc_Conversion::ConvertPoint(), FixMixLoc(), GetDeltaSeqSummary(), variation::GetFuzzSign(), GetLowHighFromSeqLoc(), CPacked_seqpnt::IsPartialStart(), CSeq_interval::IsPartialStart(), CSeq_point::IsPartialStart(), CPacked_seqpnt::IsPartialStop(), CSeq_interval::IsPartialStop(), CSeq_point::IsPartialStop(), variation::IsPureFuzzPoint(), CPacked_seqpnt::IsTruncatedStart(), CSeq_interval::IsTruncatedStart(), CSeq_point::IsTruncatedStart(), CPacked_seqpnt::IsTruncatedStop(), CSeq_interval::IsTruncatedStop(), CSeq_point::IsTruncatedStop(), SSNP_Info::ParseSeq_feat(), CSeq_loc_Conversion::ReverseFuzz(), s_CheckFuzz(), variation::CHgvsParser::s_IntWithFuzzToStr(), s_IsBetween(), s_PrintLocAsJavascriptArray(), s_RemoveBogusFuzzFromIntervals_Helper(), variation::CHgvsParser::s_SetStartOffset(), variation::CHgvsParser::s_SetStopOffset(), SeqIntPartialCheck(), variation::SwapLtGtFuzz(), CValidError_bioseq::ValidateDelta(), CSeqMap::x_Add(), CFlatSeqLoc::x_Add(), CSGFeatureJob::x_CalcIntervals(), CFeatGlyph::x_DrawFeatureBar(), CFeatGlyph::x_DrawRSites(), CSeq_loc_Mapper_Base::x_FixNonsenseFuzz(), CFlatSeqLoc::x_FuzzToDisplayed(), variation_ref::CHgvsParser::x_general_pos(), CFeatGlyph::x_GetUndefinedBp_from(), CFeatGlyph::x_GetUndefinedBp_to(), variation_ref::CHgvsParser::x_IntWithFuzzToStr(), CSeq_loc_Mapper_Base::x_NextMappingRange(), CValidError_imp::x_ReportInvalidFuzz(), variation_ref::CHgvsParser::x_seq_ref(), and CNewCleanup_imp::x_SeqPointBC().

IsMl()

bool CPerson_id_Base::IsMl ( void  ) const

inline

Check if variant Ml is selected.

Ml type is defined as 'typedef string TMl'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 365 of file Person_id_.hpp.

References CPerson_id_Base::e_Ml, and CPerson_id_Base::m_choice.

Referenced by CAuthor::ConvertMlToStandard(), CReferenceItem::GetAuthNames(), pub_report::GetAuthorsFromList(), pub_report::GetNameFromStdName(), HasAuthor(), CValidError_imp::HasName(), and CFindASN1Dlg::ReplaceInAuthor().

IsName()

bool CPerson_id_Base::IsName ( void  ) const

inline

Check if variant Name is selected.

Name type is defined as 'typedef CName_std TName'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 359 of file Person_id_.hpp.

References CPerson_id_Base::e_Name, and CPerson_id_Base::m_choice.

Referenced by CValidator::BadCharsInAuthor(), fix_pub::ExtractConsortiums(), CReferenceItem::GetAuthNames(), CPubField::GetAuthorField(), pub_report::GetAuthorsFromList(), GetFirstAuthor(), pub_report::GetNameFromStdName(), HasAuthor(), CValidError_imp::HasName(), CAuthorNamesPanel::IsAuthorEmpty(), CEditingActionDescAuthorFirstName::IsSetValue(), CEditingActionDescAuthorLastName::IsSetValue(), CEditingActionDescAuthorSuffix::IsSetValue(), CEditingActionDescAuthorInitials::IsSetValue(), fix_pub::PrintPub(), CFindASN1Dlg::ReplaceInAuthor(), CSubmitterNamePanel::ReportMissingFields(), IAuthorEditor::s_FixInitialsNew(), s_GetAuthorMatchString(), s_GetStringFromAuthor(), CPubField::SetAuthorField(), CEditingActionDescAuthorFirstName::SetValue(), fix_pub::TenAuthorsProcess(), CSubmitterNamePanel::TransferDataFromWindow(), CValidError_imp::ValidateSubmitBlock(), CFixAuthorInitials::x_ApplyToCAuth(), CFixAuthorCap::x_ApplyToCAuth(), CStripAuthorSuffix::x_ApplyToCAuth(), CConvertAllAuthorToConsortium::x_ApplyToCAuth(), CConvertAuthorToConsortiumWhereConstraint::x_ApplyToCAuth(), CMacroFunction_AuthorFix::x_MakeAuthorChanges(), and CSrcWriter::xGather().

IsObject()

bool CUser_field_Base::C_Data::IsObject ( void  ) const

inline

Check if variant Object is selected.

Object type is defined as 'typedef CUser_object TObject'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 809 of file User_field_.hpp.

Referenced by CWndLayoutReg::GetDefaultLayout(), CWndLayoutReg::GetLayout(), CTreeLabel::InitializeFromUserObject(), s_IsGnomonModel(), CTreeLabel::SaveToUserObject(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddQualsExt(), and CFeatureItem::x_HasMethodtRNAscanSE().

IsObjects()

bool CUser_field_Base::C_Data::IsObjects ( void  ) const

inline

Check if variant Objects is selected.

Objects type is defined as 'typedef vector< CRef< CUser_object > > TObjects'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 915 of file User_field_.hpp.

Referenced by CPhyloSelectionSetMgr::InitFromUserObject(), CFeatureItem::x_AddFTableExtQuals(), and CFeatureItem::x_AddQualsExt().

IsOs()

bool CUser_field_Base::C_Data::IsOs ( void  ) const

inline

Check if variant Os is selected.

Os type is defined as 'typedef vector< char > TOs'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 789 of file User_field_.hpp.

Referenced by CSnpBitfieldFactory::CreateBitfield(), and CSnpBitfield2::CSnpBitfield2().

IsOss()

bool CUser_field_Base::C_Data::IsOss ( void  ) const

inline

Check if variant Oss is selected.

Oss type is defined as 'typedef vector< vector< char >* > TOss'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 875 of file User_field_.hpp.

IsP_m()

bool CInt_fuzz_Base::IsP_m ( void  ) const

inline

Check if variant P_m is selected.

P_m type is defined as 'typedef TSeqPos TP_m'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 576 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::e_P_m, and CInt_fuzz_Base::m_choice.

IsPct()

bool CInt_fuzz_Base::IsPct ( void  ) const

inline

Check if variant Pct is selected.

Pct type is defined as 'typedef int TPct'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 609 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::e_Pct, and CInt_fuzz_Base::m_choice.

IsRange()

bool CInt_fuzz_Base::IsRange ( void  ) const

inline

Check if variant Range is selected.

Range type is defined as 'typedef C_Range TRange'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 603 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::e_Range, and CInt_fuzz_Base::m_choice.

Referenced by variation::ApplyOffsetFuzz(), variation::CHgvsParser::s_IntWithFuzzToStr(), variation_ref::CHgvsParser::x_abs_pos(), variation::CHgvsParser::x_abs_pos(), CFeatGlyph::x_DrawFeatureBar_sv(), CSeq_loc_Mapper_Base::x_FixNonsenseFuzz(), variation::CHgvsParser::x_general_pos(), and variation_ref::CHgvsParser::x_IntWithFuzzToStr().

IsReal()

bool CUser_field_Base::C_Data::IsReal ( void  ) const

inline

Check if variant Real is selected.

Real type is defined as 'typedef double TReal'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 735 of file User_field_.hpp.

Referenced by CPhyloSelectionSet::InitFromUserObject(), and CDemoSeqQaApp::Run().

IsReals()

bool CUser_field_Base::C_Data::IsReals ( void  ) const

inline

Check if variant Reals is selected.

Reals type is defined as 'typedef vector< double > TReals'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 855 of file User_field_.hpp.

IsSetClass()

bool CUser_object_Base::IsSetClass ( void  ) const

inline

endeavor which designed this object Check if a value has been assigned to Class data member.

Data member Class is optional; its type is defined as 'typedef string TClass'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 246 of file User_object_.hpp.

References CUser_object_Base::m_set_State.

Referenced by CRemoveDuplicateStructuredComment::ApplyToUserObject(), CUser_object_Base::CanGetClass(), CUser_object::GetCategory(), CValidErrorFormat::GetDescriptorContent(), CUserFeatHandler::GetLabel(), CBankITCommentField::GetVals(), s_GetContentLabel(), CUser_object_Base::SetClass(), and CSequenceUpdater::x_RemoveDescriptorsFromImportedProducts().

IsSetData() [1/2]

bool CUser_field_Base::IsSetData ( void  ) const

inline

Check if a value has been assigned to Data data member.

Data member Data is mandatory; its type is defined as 'typedef C_Data TData'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1012 of file User_field_.hpp.

References CUser_field_Base::m_Data, and CRef< C, Locker >::NotEmpty().

Referenced by CTableAnnotDataSource::AddSeqLoc(), CTableAnnotDataSource::AddSnpSeqLoc(), CChangeStructuredCommentKeyword::ApplyToCSeq_entry_user(), CReorderStructuredComment::ApplyToCSeq_entry_user(), CRemoveEmptyGenomeProjectsDB::ApplyToUserObject(), CRemoveDuplicateStructuredComment::ApplyToUserObject(), CRemoveEmptyStructuredComment::ApplyToUserObject(), ClearGoTermValue(), CTableAnnotDataSource::CreateFeature(), CTableAnnotDataSource::CreateSnpFeature(), CTableAnnotDataSource::CreateSnps(), CSequenceEditingEventHandler::DeleteSpecificStructuredComment(), CTableAnnotDataSource::FindLocations(), fta_get_user_field(), GetDBLinkIDs(), GetHasFrameShift(), GetHasOrderAssignment(), GetLowTrace(), GetPrefixOrSuffixType(), CUser_object::GetRefGeneTrackingAssembly(), CUser_object::GetRefGeneTrackingGenerated(), CUser_object::GetRefGeneTrackingIdenticalTo(), CUser_object::GetRefGeneTrackingStatus(), CWriteUtil::GetStringForModelEvidence(), CCommentItem::GetStringForTLS(), CCommentItem::GetStringForTSA(), CCommentItem::GetStringForWGS(), CReadUtil::GetTrackValue(), CWriteUtil::GetUserObjectByType(), CBankITCommentField::GetVals(), CLocalIDField::GetVals(), CEditingActionDescGenomeProjectId::GetValue(), CEditingActionDescStructCommDbName::GetValue(), CLocalIDField::IsEmpty(), IsMatchingIdMissing(), CUser_object::CRefGeneTrackingAccession::MakeAccessionField(), CUser_object::CRefGeneTrackingAccession::MakeAccessionFromUserField(), CEditingActionDescUserObject::Modify(), CEditingActionDescLocalId::Modify(), CEditingActionDescComment::Modify(), CReorderStructuredComment::reorder_comment_by_rule(), s_AddNewDBlinkValue(), s_AddNewUserField(), CCleanup::s_AddNumToUserField(), CCleanup::s_CleanupGeneOntology(), CCleanup::s_CleanupGenomeAssembly(), CCleanup::s_CleanupStructuredComment(), s_CountAccessions(), s_FastaGetOriginalID(), s_FieldHasNonBlankValue(), s_GatherExistingValues(), s_GetAssemblyInfo(), s_GetEncodeValues(), s_GetModelEvidance(), s_GetMrnaProteinLink(), s_GetOriginalID(), s_HasRefSeqPGAPStructuredComment(), s_IsGenomeAnnotationStart(), s_IsGnomonModel(), CMacroFunction_RemoveQual::s_RemoveFields(), s_SeqDescCompare(), SetGoTermValue(), CDBLinkField::SetVal(), CStructuredCommentField::SetVal(), CEditingActionDescUserObject::SetValue(), sGetMethodFromModelEvidence(), CMacroFunction_AddDBLink::TheFunction(), CMacroFunction_ParseToStructComm::TheFunction(), CRefGeneTrackLocListPanel::TransferDataFromWindow(), CValidError_desc::ValidateDblink(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddQualsExt(), CGuiObjectInfoSeq_align::x_AddUserObject(), x_AlmostEquals(), CBioseqContext::x_CheckForShowComments(), CCleanup::x_CleanupUserField(), CUser_object::x_GetRefGeneTrackingField(), CModifySeqId::x_GetRemoveOriginalIdCommand(), CMacroFunction_ParsedText::x_GetSpecialField(), CFeatureItem::x_HasMethodtRNAscanSE(), CValidError_bioseq::x_HasPGAPStructuredComment(), CBioseqIndex::x_InitDescs(), CUser_object::x_IsUnreviewedType(), CUser_object::x_IsUnverifiedType(), CAutoDefOptions::x_MakeModifierList(), CBioseqContext::x_SetDataFromUserObjects(), CDeflineGenerator::x_SetFlags(), CAutoDefOptions::x_SetModifierList(), CAutoDefOptions::x_SetSuppressedFeatures(), CValidError_desc::x_ValidateStructuredCommentSuffix(), CGff2Writer::xAssignFeatureAttributesGoMarkup(), and CSrcWriter::xGetOriginalId().

IsSetData() [2/2]

bool CUser_object_Base::IsSetData ( void  ) const

inline

the object itself Check if a value has been assigned to Data data member.

Data member Data is mandatory; its type is defined as 'typedef vector< CRef< CUser_field > > TData'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 323 of file User_object_.hpp.

References CUser_object_Base::m_set_State.

Referenced by AddGoTermToList(), AddLocalIdUserObjects(), CValidErrorSuppress::AddSuppression(), CChangeStructuredCommentKeyword::ApplyToCSeq_entry_user(), CReorderStructuredComment::ApplyToCSeq_entry_user(), CRemoveEmptyGenomeProjectsDB::ApplyToUserObject(), CRemoveDuplicateStructuredComment::ApplyToUserObject(), CRemoveEmptyStructuredComment::ApplyToUserObject(), CModifyStructuredComment::ApplyToUserObject(), CComment_rule::CheckGeneralStructuredComment(), CGenericStructuredCommentColumn::ClearInComment(), CDBLinkField::ClearVal(), CGenomeProjectField::ClearVal(), CStructCommFieldValuePair::ClearVal(), CStructCommDBName::ClearVal(), CStructCommFieldName::ClearVal(), CStructuredCommentField::ClearVal(), CountGoTerms(), CSubmissionWizard::ExportTemplate(), fta_dblink_has_sra(), fta_get_dblink_user_object(), fta_get_user_object(), CEditObjectSeq_desc::GetEditCommand(), GetGoTermErrors(), CStructCommentSubpanel::GetLabelsFromSeq(), CBamAlignIterator::GetMatchAlign(), CTableDataValidateParams::GetNamedBoolField(), GetProjectID(), CStructCommentFieldPanel::GetStructCommentFields(), CComment_rule::GetStructuredCommentPrefix(), CGuiObjectInfoSeq_align::GetToolTip(), CReadUtil::GetTrackValue(), CAuthorizedAccessPanel::GetUser_object(), CRefGeneTrackingPanel::GetUser_object(), CGenomeProjectField::GetVal(), CDBLinkField::GetVals(), CStructCommFieldValuePair::GetVals(), CStructCommFieldName::GetVals(), CStructuredCommentField::GetVals(), HasBadGenomeAssemblyName(), HasBadGenomeAssemblyPartial(), HasRepairedIDs(), IsAppropriateRule(), CDBLinkField::IsEmpty(), CGenomeProjectField::IsEmpty(), CStructCommFieldValuePair::IsEmpty(), CStructuredCommentField::IsEmpty(), CEditingActionDescUserObject::Modify(), CEditingActionDescStructCommFieldName::Modify(), CStructuredCommentPanel::OnExport(), CRepeatToFeat::operator()(), RemoveDuplicateGoTerms(), CUser_object::RemoveNamedField(), CComment_rule::ReorderFields(), CCleanup::s_CleanupDBLink(), CCleanup::s_CleanupGeneOntology(), CCleanup::s_CleanupStructuredComment(), s_GetMrnaProteinLink(), s_IdXrefsNotReciprocal(), s_IsGenomeAnnotationStart(), s_IsGnomonModel(), CMacroFunction_SetStructCommDb::s_MoveSuffixToTheEnd(), CCleanup::s_RemoveEmptyFields(), CMacroFunction_RemoveQual::s_RemoveFields(), SeqTableFromAssemblyFields(), CTableDataValidateParams::SetNamedBoolField(), CValidErrorSuppress::SetSuppressedCodes(), CDBLinkField::SetVal(), CStructuredCommentField::SetVal(), CGenomeProjectField::SetVal(), CValidError_desc::ValidateDblink(), CValidError_desc::ValidateUser(), CValidError_bioseq::ValidateWGSMaster(), x_AlmostEquals(), CBioseqContext::x_CheckForShowComments(), CTracebackSearchTestFixture::x_FindUsedGis(), CAutoDef::x_GetHumanSTRFeatureClauses(), CAutoDef::x_GetHumanSTRv2FeatureClauses(), CFeatureItem::x_HasMethodtRNAscanSE(), CStructuredCommentField::x_InsertFieldAtCorrectPosition(), CStructCommFieldValuePair::x_InsertFieldAtCorrectPosition(), CAutoDef::x_IsHumanSTR(), CUser_object::x_IsUnreviewedType(), CUser_object::x_IsUnverifiedType(), CSubmissionWizard::x_MergeDBLink(), CUser_object::x_RemoveUnreviewedType(), CUser_object::x_RemoveUnverifiedType(), CBioseqContext::x_SetDataFromUserObjects(), CDescrModApply::x_SetDBLinkFieldVals(), CValidError_desc::x_ValidateStructuredComment(), and CVcfReader::xAssignVcfMeta().

IsSetDay()

bool CDate_std_Base::IsSetDay ( void  ) const

inline

day of month (1-31) Check if a value has been assigned to Day data member.

Data member Day is optional; its type is defined as 'typedef int TDay'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 501 of file Date_std_.hpp.

References CDate_std_Base::m_set_State.

Referenced by CDate_std_Base::CanGetDay(), CCleanup::s_CleanupGenomeAssembly(), s_CompareDates(), s_IsDateEmpty(), CDate_std_Base::SetDay(), CAddSecondary::TransferDataToWindow(), CSeq_id_PDB_Info::x_NormalizeDate(), and XDateCheck().

IsSetDb()

bool CDbtag_Base::IsSetDb ( void  ) const

inline

name of database or system Check if a value has been assigned to Db data member.

Data member Db is mandatory; its type is defined as 'typedef string TDb'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 208 of file Dbtag_.hpp.

References CDbtag_Base::m_set_State.

Referenced by CFeatGapInfo::AdjustProteinSeq(), CDbtag_Base::CanGetDb(), CGeneralToLocalId::CGeneralToLocalId(), CSeqIdGuesser::CSeqIdGuesser(), CFlatSubmitterSeqidQVal::Format(), GetAccessionAndDatabaseSource(), CWholeFileAnnotation::GetAndUseAnnot(), CWriteUtil::GetDbTag(), CValidErrorFormat::GetFeatureIdLabel(), GetGeneralOrLocal(), CSeqIdGuesser::GetIdStrings(), CCommentItem::GetStringForTPA(), CGeneralIDField::GetVal(), CEditingActionBiosourceDbxref::IsSetValue(), CEditingActionFeatDbxref::IsSetValue(), CEditingActionFileId::IsSetValue(), CEditingActionGeneralIdDb::IsSetValue(), CEditingActionGeneralIdTag::IsSetValue(), CValidator::IsValidDbxref(), fix_pub::MergeNonPubmedPubIds(), CFindASN1Dlg::ReplaceInDbxref(), CSeq_id_General_Id_Info::Restore(), CSeq_id_General_Str_Info::Restore(), s_FindSmartSeqId(), CMacroFunction_MakeBoldXrefs::s_GetBarcodeId(), s_IsSkippableDbtag(), s_ShouldUseOriginalID(), s_SkipFeature(), CDbtag_Base::SetDb(), CValidError_imp::ValidateDbxref(), CValidError_bioseq::ValidateSeqDescContext(), CValidError_bioseq::ValidateSeqId(), CFastaOstreamEx::x_AddDbxrefAttribute(), CFeatureItem::x_AddFTableDbxref(), CFeatureItem::x_AddQualsVariation(), CEditSeqId::x_CollectChangedIds(), CRemoveGeneralId::x_CollectChangedIds(), CPrimaryItem::x_GetStrForPrimary(), CFileIDField::x_IsNCBIFILEId(), CCdregionValidator::x_ReportTranslationProblems(), CNewCleanup_imp::x_SplitDbtag(), CSingleFeatValidator::x_ValidateLocusTagGeneralMatch(), CVcfWriter::x_WriteFeatureInfo(), and XISAGappedSeqLoc().

IsSetFirst()

bool CName_std_Base::IsSetFirst ( void  ) const

inline

Check if a value has been assigned to First data member.

Data member First is optional; its type is defined as 'typedef string TFirst'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 457 of file Name_std_.hpp.

References CName_std_Base::m_set_State.

Referenced by AddContact(), NMacroUtil::ApplyAuthorNames(), NMacroUtil::ApplyFirstName(), NMacroUtil::ApplyMiddleInitial(), CValidator::BadCharsInAuthor(), BOOST_AUTO_TEST_CASE(), CName_std_Base::CanGetFirst(), FixCapitalization(), FixInitials(), GenerateInitials(), get_auth_from_toks(), CPubField::GetAuthorField(), CEditingActionDescAuthorInitials::GetValue(), CAuthorNamesPanel::IsAuthorEmpty(), CEditingActionDescAuthorFirstName::IsSetValue(), MoveMiddleToFirst(), NMacroUtil::RemoveFirstName(), NMacroUtil::RemoveMiddleInitial(), CFindASN1Dlg::ReplaceInAuthor(), CSubmitterNamePanel::ReportMissingFields(), CCleanup::s_CleanupNameStdBC(), CMacroFunction_FixPubCaps::s_FixCapitalizationInAuthor(), CCleanup::s_FixEtAl(), CMacroFunction_AuthorFix::s_FixInitials(), IAuthorEditor::s_FixInitials(), CMacroFunction_AuthorFix::s_MoveMiddleToFirst(), CSingleAuthorPanel::s_ParseInitialsFromName(), CMacroFunction_AuthorFix::s_ReverseAuthorNames(), CMacroFunction_AuthorFix::s_TruncateMiddleInitials(), CPubField::SetAuthorField(), CName_std_Base::SetFirst(), CEditingActionDescAuthorFirstName::SetValue(), CContactPanel::TransferDataToWindow(), CSubmitterPanel_Depr::TransferDataToWindow(), CValidError_imp::ValidateAuthorList(), CValidError_imp::ValidateAuthorsInPubequiv(), CValidError_imp::ValidateSubmitBlock(), CMacroFunction_AddPubAuthor::x_AddAuthor(), and CFixAuthorCap::x_ApplyToCAuth().

IsSetFull()

bool CName_std_Base::IsSetFull ( void  ) const

inline

full name eg.

"J. John Smith, Esq" Check if a value has been assigned to Full data member.

Data member Full is optional; its type is defined as 'typedef string TFull'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 551 of file Name_std_.hpp.

References CName_std_Base::m_set_State.

Referenced by CName_std_Base::CanGetFull(), CAuthor::GetLabelV2(), CFindASN1Dlg::ReplaceInAuthor(), CCleanup::s_CleanupNameStdBC(), and CName_std_Base::SetFull().

IsSetHour()

bool CDate_std_Base::IsSetHour ( void  ) const

inline

hour of day (0-23) Check if a value has been assigned to Hour data member.

Data member Hour is optional; its type is defined as 'typedef int THour'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 595 of file Date_std_.hpp.

References CDate_std_Base::m_set_State.

Referenced by CDate_std_Base::CanGetHour(), CDate_std_Base::SetHour(), CNewCleanup_imp::x_DateStdBC(), and CSeq_id_PDB_Info::x_NormalizeDate().

IsSetInitials()

bool CName_std_Base::IsSetInitials ( void  ) const

inline

first + middle initials Check if a value has been assigned to Initials data member.

Data member Initials is optional; its type is defined as 'typedef string TInitials'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 598 of file Name_std_.hpp.

References CName_std_Base::m_set_State.

Referenced by NMacroUtil::ApplyFirstName(), NMacroUtil::ApplyMiddleInitial(), CValidator::BadCharsInAuthor(), BOOST_AUTO_TEST_CASE(), CName_std_Base::CanGetInitials(), FixCapitalization(), FixInitials(), fta_fix_last_initials(), GenerateInitials(), get_auth_from_toks(), CPubField::GetAuthorField(), pub_report::GetAuthorsFromList(), GetFirstAuthor(), pub_report::GetNameFromStdName(), CAuthorNamesPanel::IsAuthorEmpty(), CEditingActionDescAuthorInitials::IsSetValue(), MoveMiddleToFirst(), fix_pub::PrintPub(), NMacroUtil::RemoveFirstName(), NMacroUtil::RemoveMiddleInitial(), CFindASN1Dlg::ReplaceInAuthor(), CCleanup::s_CleanupNameStdBC(), CCleanup::s_ExtractSuffixFromInitials(), CMacroFunction_FixPubCaps::s_FixCapitalizationInAuthor(), CCleanup::s_FixEtAl(), CMacroFunction_AuthorFix::s_FixInitials(), IAuthorEditor::s_FixInitials(), CMacroFunction_AuthorFix::s_MoveMiddleToFirst(), CSingleAuthorPanel::s_ParseInitialsFromName(), CMacroFunction_AuthorFix::s_ReverseAuthorNames(), CMacroFunction_AuthorFix::s_TruncateMiddleInitials(), CPubField::SetAuthorField(), CName_std_Base::SetInitials(), CEditingActionDescAuthorFirstName::SetValue(), fix_pub::TenAuthorsProcess(), CContactPanel::TransferDataToWindow(), CSubmitterPanel_Depr::TransferDataToWindow(), CValidError_imp::ValidateAuthorList(), and CSrcWriter::xGather().

IsSetLabel()

bool CUser_field_Base::IsSetLabel ( void  ) const

inline

field label Check if a value has been assigned to Label data member.

Data member Label is mandatory; its type is defined as 'typedef CObject_id TLabel'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 935 of file User_field_.hpp.

References CUser_field_Base::m_Label.

Referenced by CRemoveEmptyGenomeProjectsDB::ApplyToUserObject(), CComment_rule::CheckGeneralField(), CFlatModelEvQVal::Format(), CUser_object::GetCategory(), CUser_object::GetFieldRef(), GetIdField(), GetPrefixOrSuffixType(), CWriteUtil::GetStringForModelEvidence(), CReadUtil::GetTrackValue(), CBankITCommentField::GetVals(), CLocalIDField::GetVals(), CLocalIDField::IsEmpty(), CGenomeProjectField::IsGenomeProjectID(), IsMatchingIdMissing(), CCleanup::s_CleanupGeneOntology(), CCleanup::s_CleanupGenomeAssembly(), CCleanup::s_CleanupStructuredComment(), s_CountAccessions(), s_FieldHasLabel(), s_GetModelEvidance(), s_GetMrnaProteinLink(), s_IsGnomonModel(), s_IsSuppressField(), CMacroFunction_SetStructCommDb::s_MoveSuffixToTheEnd(), s_UserFieldCompare(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddGoQuals(), CFeatureItem::x_AddQualsExt(), CGuiObjectInfoSeq_align::x_AddUserObject(), x_AlmostEquals(), CBioseqContext::x_CheckForShowComments(), CCleanup::x_CleanupUserField(), CTracebackSearchTestFixture::x_FindUsedGis(), CGenomeProjectItem::x_GatherInfo(), CMacroFunction_ParsedText::x_GetSpecialField(), CFeatureItem::x_HasMethodtRNAscanSE(), CBioseqIndex::x_InitDescs(), CUser_object::x_IsUnreviewedType(), CUser_object::x_IsUnverifiedType(), CBioseqContext::x_SetDataFromUserObjects(), CNullProcess::x_UserFieldCompare(), and CGff2Writer::xAssignFeatureAttributesGoMarkup().

IsSetLast()

bool CName_std_Base::IsSetLast ( void  ) const

inline

Check if a value has been assigned to Last data member.

Data member Last is mandatory; its type is defined as 'typedef string TLast'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 410 of file Name_std_.hpp.

References CName_std_Base::m_set_State.

Referenced by AddContact(), CValidator::BadCharsInAuthor(), CName_std_Base::CanGetLast(), CName_std::ExtractSuffixFromLastName(), FixCapitalization(), fta_check_long_last_name(), fta_fix_last_initials(), get_auth_from_toks(), get_std_auth(), CPubField::GetAuthorField(), pub_report::GetAuthorsFromList(), GetFirstAuthor(), pub_report::GetNameFromStdName(), CAuthorNamesPanel::IsAuthorEmpty(), CEditingActionDescAuthorLastName::IsSetValue(), SAuthorEmpty::operator()(), fix_pub::PrintPub(), CFindASN1Dlg::ReplaceInAuthor(), CSubmitterNamePanel::ReportMissingFields(), CCleanup::s_CleanupNameStdBC(), CMacroFunction_FixPubCaps::s_FixCapitalizationInAuthor(), CCleanup::s_FixEtAl(), s_GetAuthorMatchString(), s_GetStringFromAuthor(), CMacroFunction_AuthorFix::s_ReverseAuthorNames(), CPubField::SetAuthorField(), CName_std_Base::SetLast(), fix_pub::TenAuthorsProcess(), CSubmitterNamePanel::TransferDataFromWindow(), CContactPanel::TransferDataToWindow(), CSubmitterPanel_Depr::TransferDataToWindow(), CValidError_imp::ValidateAuthorList(), CValidError_imp::ValidateAuthorsInPubequiv(), CValidError_imp::ValidateSubmitBlock(), CFixAuthorCap::x_ApplyToCAuth(), CConvertAllAuthorToConsortium::x_ApplyToCAuth(), CConvertAuthorToConsortiumWhereConstraint::x_ApplyToCAuth(), and CSrcWriter::xGather().

IsSetMax()

bool CInt_fuzz_Base::C_Range::IsSetMax ( void  ) const

inline

Check if a value has been assigned to Max data member.

Data member Max is mandatory; its type is defined as 'typedef TSeqPos TMax'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 453 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::C_Range::m_set_State.

IsSetMiddle()

bool CName_std_Base::IsSetMiddle ( void  ) const

inline

Check if a value has been assigned to Middle data member.

Data member Middle is optional; its type is defined as 'typedef string TMiddle'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 504 of file Name_std_.hpp.

References CName_std_Base::m_set_State.

Referenced by CName_std_Base::CanGetMiddle(), CFindASN1Dlg::ReplaceInAuthor(), CCleanup::s_CleanupNameStdBC(), and CName_std_Base::SetMiddle().

IsSetMin()

bool CInt_fuzz_Base::C_Range::IsSetMin ( void  ) const

inline

Check if a value has been assigned to Min data member.

Data member Min is mandatory; its type is defined as 'typedef TSeqPos TMin'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 500 of file Int_fuzz_.hpp.

IsSetMinute()

bool CDate_std_Base::IsSetMinute ( void  ) const

inline

minute of hour (0-59) Check if a value has been assigned to Minute data member.

Data member Minute is optional; its type is defined as 'typedef int TMinute'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 642 of file Date_std_.hpp.

References CDate_std_Base::m_set_State.

Referenced by CDate_std_Base::CanGetMinute(), CDate_std_Base::SetMinute(), CNewCleanup_imp::x_DateStdBC(), and CSeq_id_PDB_Info::x_NormalizeDate().

IsSetMonth()

bool CDate_std_Base::IsSetMonth ( void  ) const

inline

month (1-12) Check if a value has been assigned to Month data member.

Data member Month is optional; its type is defined as 'typedef int TMonth'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 454 of file Date_std_.hpp.

References CDate_std_Base::m_set_State.

Referenced by CDate_std_Base::CanGetMonth(), CCleanup::s_CleanupGenomeAssembly(), s_CompareDates(), s_IsDateEmpty(), pub_report::CPubData::SetDate(), pub_report::CUnpublishedReport::SetDate(), CDate_std_Base::SetMonth(), CAddSecondary::TransferDataToWindow(), CSeq_id_PDB_Info::x_NormalizeDate(), and XDateCheck().

IsSetNum()

bool CUser_field_Base::IsSetNum ( void  ) const

inline

required for strs, ints, reals, oss Check if a value has been assigned to Num data member.

Data member Num is optional; its type is defined as 'typedef int TNum'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 965 of file User_field_.hpp.

References CUser_field_Base::m_set_State.

Referenced by CUser_field_Base::CanGetNum(), CEditingActionDescUserObject::Modify(), SSNP_Info::ParseSeq_feat(), CCleanup::s_AddNumToUserField(), s_GetModelEvidance(), and CUser_field_Base::SetNum().

IsSetSeason()

bool CDate_std_Base::IsSetSeason ( void  ) const

inline

for "spring", "may-june", etc Check if a value has been assigned to Season data member.

Data member Season is optional; its type is defined as 'typedef string TSeason'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 548 of file Date_std_.hpp.

References CDate_std_Base::m_set_State.

Referenced by CDate_std_Base::CanGetSeason(), s_CompareDates(), CDate_std_Base::SetSeason(), and CSeq_id_PDB_Info::x_NormalizeDate().

IsSetSecond()

bool CDate_std_Base::IsSetSecond ( void  ) const

inline

second of minute (0-59) Check if a value has been assigned to Second data member.

Data member Second is optional; its type is defined as 'typedef int TSecond'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 689 of file Date_std_.hpp.

References CDate_std_Base::m_set_State.

Referenced by CDate_std_Base::CanGetSecond(), CDate_std_Base::SetSecond(), CNewCleanup_imp::x_DateStdBC(), and CSeq_id_PDB_Info::x_NormalizeDate().

IsSetSuffix()

bool CName_std_Base::IsSetSuffix ( void  ) const

inline

Jr, Sr, III Check if a value has been assigned to Suffix data member.

Data member Suffix is optional; its type is defined as 'typedef string TSuffix'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 645 of file Name_std_.hpp.

References CName_std_Base::m_set_State.

Referenced by CValidator::BadCharsInAuthor(), CName_std_Base::CanGetSuffix(), CName_std::ExtractSuffixFromLastName(), fta_fix_affil(), get_auth_from_toks(), CPubField::GetAuthorField(), CEditingActionDescAuthorSuffix::IsSetValue(), CFindASN1Dlg::ReplaceInAuthor(), CCleanup::s_CleanupNameStdBC(), CCleanup::s_ExtractSuffixFromInitials(), CPubField::SetAuthorField(), CName_std_Base::SetSuffix(), CContactPanel::TransferDataToWindow(), CSubmitterPanel_Depr::TransferDataToWindow(), CValidError_imp::ValidateAuthorList(), CStripAuthorSuffix::x_ApplyToCAuth(), and CMacroFunction_AuthorFix::x_MakeAuthorChanges().

IsSetTag()

bool CDbtag_Base::IsSetTag ( void  ) const

inline

appropriate tag Check if a value has been assigned to Tag data member.

Data member Tag is mandatory; its type is defined as 'typedef CObject_id TTag'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 255 of file Dbtag_.hpp.

References CDbtag_Base::m_Tag.

Referenced by CBioseqIndex::CBioseqIndex(), CGeneralToLocalId::CGeneralToLocalId(), CLocalToGeneralId::CLocalToGeneralId(), CSeqIdGuesser::CSeqIdGuesser(), CFlatSubmitterSeqidQVal::Format(), GetAccessionAndDatabaseSource(), CWholeFileAnnotation::GetAndUseAnnot(), CWriteUtil::GetDbTag(), CValidErrorFormat::GetFeatureIdLabel(), GetGeneralOrLocal(), CSeqIdGuesser::GetIdStrings(), CGeneralIDField::GetVal(), CEditingActionBiosourceDbxref::IsSetValue(), CEditingActionFeatDbxref::IsSetValue(), CEditingActionGeneralIdTag::IsSetValue(), CValidator::IsValidDbxref(), CFindASN1Dlg::ReplaceInDbxref(), s_GeneralTagsMatch(), CMacroFunction_MakeBoldXrefs::s_GetBarcodeId(), CValidError_imp::ValidateDbxref(), CValidError_bioseq::ValidateSeqId(), CFastaOstreamEx::x_AddDbxrefAttribute(), CFeatureItem::x_AddFTableDbxref(), CFeatureItem::x_AddQualsVariation(), CEditSeqId::x_CollectChangedIds(), CDeltaBlastTestFixture::x_CountNumberUniqueIds(), CGsdbComment::x_GatherInfo(), CReferenceItem::x_Init(), CGeneModelTrack::x_NeedHighlight(), CDeflineGenerator::x_SetFlags(), CNewCleanup_imp::x_SplitDbtag(), CSingleFeatValidator::x_ValidateLocusTagGeneralMatch(), CVcfWriter::x_WriteFeatureInfo(), and XISAGappedSeqLoc().

IsSetTitle()

bool CName_std_Base::IsSetTitle ( void  ) const

inline

Dr., Sister, etc Check if a value has been assigned to Title data member.

Data member Title is optional; its type is defined as 'typedef string TTitle'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 692 of file Name_std_.hpp.

References CName_std_Base::m_set_State.

Referenced by CName_std_Base::CanGetTitle(), CFindASN1Dlg::ReplaceInAuthor(), CCleanup::s_CleanupNameStdBC(), and CName_std_Base::SetTitle().

IsSetType()

bool CUser_object_Base::IsSetType ( void  ) const

inline

type of object within class Check if a value has been assigned to Type data member.

Data member Type is mandatory; its type is defined as 'typedef CObject_id TType'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 293 of file User_object_.hpp.

References CUser_object_Base::m_Type.

Referenced by CSeq_feat::AddExt(), CReorderStructuredComment::ApplyToCSeq_entry_user(), CRemoveGenomeProjectsDB::ApplyToUserObject(), CRemoveEmptyGenomeProjectsDB::ApplyToUserObject(), CRemoveBankitComment::ApplyToUserObject(), CRemoveDuplicateStructuredComment::ApplyToUserObject(), CRemoveAllStructuredComment::ApplyToUserObject(), CRemoveEmptyStructuredComment::ApplyToUserObject(), CModifyStructuredComment::ApplyToUserObject(), CBedFeatureRecord::AssignDisplayData(), CGvfWriteRecord::AssignSource(), CGvfWriteRecord::AssignType(), CPrimaryEdit::CPrimaryEdit(), CSequenceEditingEventHandler::DeleteSpecificStructuredComment(), descr_cmp(), CSubmissionWizard::ExtractDescriptor(), NMacroUtil::FindNcbiAutofixUserObject(), fta_dblink_has_sra(), fta_get_project_user_object(), fta_remove_cleanup_user_object(), fta_tsa_tls_comment_dblink_check(), CCreateSeqHistForTpa::GetCreateSeqHistFromTpaCommand(), GetDBLinkIDs(), CValidErrorFormat::GetDescriptorContent(), CEditObjectSeq_desc::GetDescriptorType(), CGenomeAnnotComment::GetGenomeBuildNumber(), CStructCommentSubpanel::GetLabelsFromSeq(), CUser_object::GetObjectType(), CCommentItem::GetStringForRefTrack(), CCommentItem::GetStringForTLS(), CCommentItem::GetStringForTSA(), CCommentItem::GetStringForWGS(), CReadUtil::GetTrackValue(), CWriteUtil::GetUserObjectByType(), CDBLinkField::IsDBLink(), CTable2AsnContext::IsDBLink(), IsGeneOntology(), CGenomeProjectField::IsGenomeProject(), CEditingActionDescGenomeProjectId::IsSetValue(), CEditingActionDescStructCommDbName::IsSetValue(), CComment_rule::IsStructuredComment(), CValidError_align::IsTpaAlignment(), CSeqEntrySource::IsUnverified(), isVersionsObject(), CEditingActionDescStructCommFieldName::Modify(), CPhyTreeView::OnSomethingEdited(), CChangePhyloSelectionSetCmd::PerformEdit(), CEditingActionDescGenomeProjectId::ResetValue(), CEditingActionDescStructCommDbName::ResetValue(), CCleanup::s_CleanupGeneOntology(), s_FastaGetOriginalID(), s_GetMrnaProteinLink(), s_GetOriginalID(), s_IdXrefsNotReciprocal(), s_IsGnomonModel(), s_IsReportableStructuredComment(), s_IsTpa(), s_IsUserType(), s_Render_Feat_Evidence(), CEditingActionDescStructCommDbName::SetValue(), CPropagateDescriptors::ShouldStayInPlace(), CValidError_desc::ValidateDblink(), CValidError_bioseqset::ValidateNucProtSet(), CValidError_bioseq::ValidateSeqDescContext(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddQualsExt(), CFeatureItem::x_AddQualsRegion(), CRemoveUnreviewed::x_ApplyToUserObject(), CSubmissionWizard::x_ApplyUserDescriptorToRecord(), CGvfWriteRecord::x_AssignAttributeID(), CGvfWriteRecord::x_AssignAttributeParent(), CGvfWriteRecord::x_AssignAttributesCustom(), CGvfWriteRecord::x_AssignAttributeVarType(), CBioseqContext::x_CheckForShowComments(), CTracebackSearchTestFixture::x_FindUsedGis(), CGenomeAnnotComment::x_GatherInfo(), CFeatureItem::x_HasMethodtRNAscanSE(), CBioseqIndex::x_InitDescs(), CGenbankFormatter::x_LocusHtmlPrefix(), CSequenceUpdater::x_RemoveDescriptorsFromImportedProducts(), CBioseqContext::x_SetDataFromUserObjects(), CBioseqContext::x_SetEncode(), CValidError_desc::x_ValidateStructuredComment(), CVcfWriter::x_WriteFeatureFilter(), CVcfWriter::x_WriteFeatureInfo(), CVcfWriter::x_WriteFeatureQual(), and CSrcWriter::xGetOriginalId().

IsSetYear()

bool CDate_std_Base::IsSetYear ( void  ) const

inline

full year (including 1900) Check if a value has been assigned to Year data member.

Data member Year is mandatory; its type is defined as 'typedef int TYear'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 407 of file Date_std_.hpp.

References CDate_std_Base::m_set_State.

Referenced by CDate_std_Base::CanGetYear(), pub_report::CheckDate(), CProceedingsPanel::CreateControls(), CProceedingsChapterPanel::CreateControls(), CPublisherPanel::CreateControls(), GetDateString(), GetDocSumLabel(), fix_pub::PrintPub(), CCleanup::s_CleanupGenomeAssembly(), s_CompareDates(), s_FormatCitGen(), s_FormatYear(), s_IsDateEmpty(), pub_report::CPubData::SetDate(), pub_report::CUnpublishedReport::SetDate(), CRelaxedLookupDlg::SetPubdesc(), CDate_std_Base::SetYear(), CAddSecondary::TransferDataToWindow(), CProceedingsPanel::TransferDataToWindow(), CProceedingsChapterPanel::TransferDataToWindow(), CPublisherPanel::TransferDataToWindow(), CValidError_imp::ValidatePubArticleNoPMID(), CValidError_imp::x_DowngradeForMissingAffil(), and XDateCheck().

IsStd()

bool CDate_Base::IsStd ( void  ) const

inline

Check if variant Std is selected.

Std type is defined as 'typedef CDate_std TStd'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 320 of file Date_.hpp.

References CDate_Base::e_Std, and CDate_Base::m_choice.

Referenced by CheckDate(), pub_report::CheckDate(), pub_report::CollectDataArt(), pub_report::CollectDataGen(), CDate::Compare(), CProceedingsPanel::CreateControls(), CProceedingsChapterPanel::CreateControls(), CPublisherPanel::CreateControls(), GetDateString(), GetDocSumLabel(), ICitationBase::GetParenthesizedYear(), CApplyPubQualTreeItemData::GetVariables(), IsDateInPast(), CSeq_id_PDB_Info::Normalize(), fix_pub::PrintPub(), CCleanup::s_CleanupGenomeAssembly(), s_CompareDates(), s_FormatCitGen(), s_FormatYear(), s_IsDateEmpty(), CRelaxedLookupDlg::SetPubdesc(), pub_report::CSkipPubUnpublishedHook::SkipObject(), CAddSecondary::TransferDataToWindow(), CProceedingsPanel::TransferDataToWindow(), CProceedingsChapterPanel::TransferDataToWindow(), CPublisherPanel::TransferDataToWindow(), CValidError_imp::ValidatePubArticleNoPMID(), CValidError_imp::x_DowngradeForMissingAffil(), CLocusItem::x_GetDateForBioseq(), and CVcfWriter::x_WriteMetaCreateNew().

IsStr() [1/4]

bool CDate_Base::IsStr ( void  ) const

inline

Check if variant Str is selected.

Str type is defined as 'typedef string TStr'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 300 of file Date_.hpp.

References CDate_Base::e_Str, and CDate_Base::m_choice.

Referenced by CheckDate(), CDate::Compare(), GetDateString(), ICitationBase::GetParenthesizedYear(), s_CompareDates(), s_FormatCitGen(), s_FormatYear(), and CValidError_imp::ValidatePubArticleNoPMID().

IsStr() [2/4]

bool CObject_id_Base::IsStr ( void  ) const

inline

Check if variant Str is selected.

Str type is defined as 'typedef string TStr'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 291 of file Object_id_.hpp.

References CObject_id_Base::e_Str, and CObject_id_Base::m_choice.

Referenced by CSeq_feat::AddExt(), CApplyFBOL::apply(), CRmvCddFeatDbxref::apply_to(), CBarcodeTool::ApplyDbxrefs(), CReorderStructuredComment::ApplyToCSeq_entry_user(), CRemoveGenomeProjectsDB::ApplyToUserObject(), CRemoveEmptyGenomeProjectsDB::ApplyToUserObject(), CRemoveBankitComment::ApplyToUserObject(), CRemoveDuplicateStructuredComment::ApplyToUserObject(), CRemoveAllStructuredComment::ApplyToUserObject(), CRemoveEmptyStructuredComment::ApplyToUserObject(), CModifyStructuredComment::ApplyToUserObject(), CBedFeatureRecord::AssignDisplayData(), CGvfWriteRecord::AssignSource(), CGvfWriteRecord::AssignType(), BOOST_AUTO_TEST_CASE(), CBioseqIndex::CBioseqIndex(), CFlatFileTextItem::CFlatFileTextItem(), CGeneralToLocalId::CGeneralToLocalId(), CComment_rule::CheckGeneralField(), CLocalToGeneralId::CLocalToGeneralId(), CSeq_id::ComposeOSLT(), CPrimaryEdit::CPrimaryEdit(), CRemoveSeqId::CRemoveSeqId(), CNewCleanup_imp::DbtagBC(), CUser_field::DeleteField(), CSequenceEditingEventHandler::DeleteSpecificStructuredComment(), descr_cmp(), CSeq_align::FindExt(), CSeq_feat::FindExt(), NMacroUtil::FindNcbiAutofixUserObject(), CSeq_id_Local_Tree::FindOrCreate(), CSeq_id_General_Tree::FindOrCreate(), CFlatSubmitterSeqidQVal::Format(), CFlatModelEvQVal::Format(), fta_build_ena_user_object(), fta_dblink_has_sra(), fta_get_project_user_object(), fta_remove_cleanup_user_object(), fta_sort_biosource(), fta_tsa_tls_comment_dblink_check(), GetAccessionAndDatabaseSource(), CWholeFileAnnotation::GetAndUseAnnot(), CDUpdater::GetBlastDefline(), CUser_object::GetCategory(), CCreateSeqHistForTpa::GetCreateSeqHistFromTpaCommand(), CField_type::GetDBLinkFieldFromUserObject(), GetDBLinkIDs(), CWriteUtil::GetDbTag(), CValidErrorFormat::GetDescriptorContent(), CEditObjectSeq_desc::GetDescriptorType(), GetDirectLabel(), CFlatFileViewContext::GetEditObject(), CUser_object::GetExperimentType(), CSGUtils::GetFeatFetchDepth(), CBioseq_Info::GetFeatureFetchPolicy(), CUser_field::GetFieldRef(), CUser_object::GetFieldRef(), CWGSDataLoader_Impl::GetFileInfoByGeneral(), CCSRABlobId::GetGeneralIdType(), CGenomeAnnotComment::GetGenomeBuildNumber(), CSeq_featHandler::GetLabel(), GetLabel(), CStructCommentSubpanel::GetLabelsFromSeq(), CGuiObjectInfoVariant::GetLinks(), CAnnotObject_Info::GetLocsTypes(), CWGSDb::GetMasterDescrType(), CVDBBlastUtil::GetOIDFromVDBSeqId(), GetPrefixOrSuffixType(), CProductStringBuilder::GetProductString(), CReadSharedObjectIdHookBase::GetSharedObject_id(), CCommentItem::GetStringForBankIt(), CWriteUtil::GetStringForModelEvidence(), CCommentItem::GetStringForRefTrack(), CCommentItem::GetStringForTLS(), CCommentItem::GetStringForTPA(), CCommentItem::GetStringForTSA(), CCommentItem::GetStringForWGS(), CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), GetTitle(), CSequenceTrack::GetTooltip(), CGuiObjectInfoVariant::GetToolTip(), CReadUtil::GetTrackValue(), CWriteUtil::GetUserObjectByType(), CBankITCommentField::GetVals(), CLocalIDField::GetVals(), CEditingActionBiosourceDbxref::GetValue(), CEditingActionFeatDbxref::GetValue(), CTextView::InitView(), IsConsensus(), CDBLinkField::IsDBLink(), CTable2AsnContext::IsDBLink(), CLocalIDField::IsEmpty(), CVariationNormalization::isFullyShifted(), IsGeneOntology(), CGenomeProjectField::IsGenomeProject(), CGenomeProjectField::IsGenomeProjectID(), IsLocalID(), IsMatchingIdMissing(), CEditingActionDescGenomeProjectId::IsSetValue(), CEditingActionDescStructCommDbName::IsSetValue(), CComment_rule::IsStructuredComment(), CValidError_align::IsTpaAlignment(), CSeqEntrySource::IsUnverified(), CValidator::IsValidDbxref(), isVarNormType(), isVersionsObject(), CFeatComparatorByLabel::Less(), CLoadStructComments::LoadWithAccessions(), Make_SeqID_String(), MakeCompartments(), CEditingActionDescUserObject::Modify(), CEditingActionDescStructCommFieldName::Modify(), CEditingActionDescLocalId::Modify(), CEditingActionDescComment::Modify(), OjectIdsAreEqual(), CSeqIdValidate::operator()(), SChildLess::operator()(), CSeq_id_Local_Info::ParseCaseVariant(), CTabularFormatter_BestPlacementGroup::Print(), CTabularFormatter_AssemblyInfo::Print(), CDUpdater::RemoveBlastDefline(), CSeq_feat::RemoveExt(), CFindASN1Dlg::ReplaceInDbxref(), CFindASN1Dlg::ReplaceInSubmit(), CEditingActionDescGenomeProjectId::ResetValue(), CEditingActionDescStructCommDbName::ResetValue(), CWGSClient::ResolveGeneral(), CSeq_id_General_Str_Info::Restore(), CDemoApp::Run(), s_AssignObject_id(), CCleanup::s_CleanupGeneOntology(), CCleanup::s_CleanupGenomeAssembly(), CCleanup::s_CleanupStructuredComment(), s_CountAccessions(), s_ExtractBlastDefline(), s_FastaGetOriginalID(), s_FieldHasLabel(), s_FindLocalId(), s_GeneralTagsMatch(), s_GetAssemblyInfo(), s_GetBareId(), s_GetContentLabel(), s_GetFeatureIdLabel(), s_GetIdLabel(), s_GetLabel(), s_GetModelEvidance(), s_GetMrnaProteinLink(), s_GetOriginalID(), s_GetSRASeqMetadata(), s_GetUserObjectContent(), s_GetUserObjectType(), s_HasTpaUserObject(), s_IdXrefsNotReciprocal(), s_IsGnomonModel(), s_IsModelEvidanceUop(), s_IsReportableStructuredComment(), s_IsSuppressField(), s_IsTpa(), s_IsUserType(), CMacroFunction_SetStructCommDb::s_MoveSuffixToTheEnd(), s_PopulateUserObject(), CMacroFunction_RemoveQual::s_RemoveFields(), s_Render_Feat_Evidence(), s_ReplaceLocalId(), s_SeqDescCompare(), SeqDB_SimplifySeqid(), SeqIdMatchesMaster(), CSeq_id::Set(), CUser_object::SetFieldRef(), CIdentifiersPanel::SetIdXrefs(), CGffAlignmentRecord::SetScore(), CGffBaseRecord::SetScore(), CValidError_imp::Setup(), CEditingActionDescStructCommDbName::SetValue(), sFeatureHasXref(), sGetFeatMapKey(), CPropagateDescriptors::ShouldStayInPlace(), sInheritScores(), sPrepareSeqAlign(), sx_MakeUniqueId(), CMacroFunction_AddDBLink::TheFunction(), CMacroFunction_ParseToStructComm::TheFunction(), CSequencingTechnologyPanel::TransferDataToWindow(), CStructuredCommentPanel::TransferDataToWindow(), CValidError_desc::ValidateDblink(), CValidError_imp::ValidateDbxref(), CValidError_bioseqset::ValidateNucProtSet(), CValidError_annot::ValidateSeqAnnot(), CValidError_bioseq::ValidateSeqDescContext(), CValidError_bioseq::ValidateSeqId(), CValidError_desc::ValidateUser(), CValidError_bioseq::ValidateWGSMaster(), CVDBBlastUtil::VDBIdType(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddGoQuals(), CWriteDB_IsamIndex::x_AddLocal(), CFeatureTableReader_Imp::x_AddQualifierToImp(), CFeatureItem::x_AddQualsExt(), CFeatureItem::x_AddQualsRegion(), CFeatureItem::x_AddQualsVariation(), CWriteDB_IsamIndex::x_AddStringIds(), CGuiObjectInfoSeq_align::x_AddUserObject(), CAlnTableDS::x_AdjustColumns(), x_AlmostEquals(), CRemoveUnreviewed::x_ApplyToUserObject(), CGvfWriteRecord::x_AssignAttributeID(), CGvfWriteRecord::x_AssignAttributeParent(), CGvfWriteRecord::x_AssignAttributesCustom(), CGvfWriteRecord::x_AssignAttributeVarType(), CBioseqContext::x_CheckForShowComments(), CCleanup::x_CleanupUserField(), CEditSeqId::x_CollectChangedIds(), CSeq_id_Resolver__LRG::x_Create(), CSeq_id_General_Tree::x_FindInfo(), CSeq_id_Local_Tree::x_FindInfo(), CVectorScreen::x_FindLocalId(), CTracebackSearchTestFixture::x_FindUsedGis(), CGencollIdMapper::x_FixImperfectId(), CDBSourceItem::x_FormatDBSourceID(), CCommentItem::x_GatherDescInfo(), CGenomeAnnotComment::x_GatherInfo(), CGenomeProjectItem::x_GatherInfo(), CPrimaryItem::x_GatherInfo(), CGenbankGatherer::x_GatherTLS(), CGenbankGatherer::x_GatherTSA(), CGenbankGatherer::x_GatherWGS(), CWriteDB_Impl::x_GetBioseqBinaryHeader(), CWriteDB_Impl::x_GetFastaReaderDeflines(), CFeatGlyph::x_GetFeatureId(), x_GetLabel_Content(), x_GetMolLocTypeUserObj(), CModifySeqId::x_GetRemoveOriginalIdCommand(), CMacroFunction_ParsedText::x_GetSpecialField(), CCommonComponentScorer::x_GetUserCompList(), CViewGraphic::x_GetViewSettingsFromParams(), CFeatureItem::x_HasMethodtRNAscanSE(), CReferenceItem::x_Init(), CBioseqIndex::x_InitDescs(), CSplitDblinkQuals::x_IsDblinkObj(), CUser_object::x_IsUnreviewedType(), CUser_object::x_IsUnverifiedType(), CGenbankFormatter::x_LocusHtmlPrefix(), CId2ReaderBase::x_ProcessGetSeqIdSeqId(), CAlignFilter::x_Query_Op(), CSequenceUpdater::x_RemoveDescriptorsFromImportedProducts(), CBioseqContext::x_SetDataFromUserObjects(), CBioseqContext::x_SetEncode(), CDeflineGenerator::x_SetFlags(), CBioseqContext::x_SetId(), CSeq_id_Local_Tree::x_Unindex(), CSeq_id_General_Tree::x_Unindex(), CSingleFeatValidator::x_ValidateLocusTagGeneralMatch(), CValidError_desc::x_ValidateStructuredComment(), CVcfWriter::x_WriteFeatureFilter(), CVcfWriter::x_WriteFeatureId(), CVcfWriter::x_WriteFeatureInfo(), CVcfWriter::x_WriteFeatureQual(), CGff3FlybaseWriter::xAssignAlignmentDensegScores(), CGff3FlybaseWriter::xAssignAlignmentSplicedScores(), CGff2Writer::xAssignFeatureAttributesGoMarkup(), CSrcWriter::xGetOriginalId(), CFeatTableEdit::xRenameFeatureId(), CWiggleWriter::xWriteSingleGraphFixedStep(), and CWiggleWriter::xWriteTrackLine().

IsStr() [3/4]

bool CPerson_id_Base::IsStr ( void  ) const

inline

Check if variant Str is selected.

Str type is defined as 'typedef string TStr'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 385 of file Person_id_.hpp.

References CPerson_id_Base::e_Str, and CPerson_id_Base::m_choice.

Referenced by CReferenceItem::GetAuthNames(), pub_report::GetAuthorsFromList(), pub_report::GetNameFromStdName(), HasAuthor(), CValidError_imp::HasName(), CFindASN1Dlg::ReplaceInAuthor(), and s_GetAuthorMatchString().

IsStr() [4/4]

bool CUser_field_Base::C_Data::IsStr ( void  ) const

inline

Check if variant Str is selected.

Str type is defined as 'typedef CStringUTF8 TStr'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 688 of file User_field_.hpp.

Referenced by CTableAnnotDataSource::AddSeqLoc(), CTableAnnotDataSource::AddSnpSeqLoc(), CChangeStructuredCommentKeyword::ApplyToCSeq_entry_user(), CReorderStructuredComment::ApplyToCSeq_entry_user(), CRemoveDuplicateStructuredComment::ApplyToUserObject(), CComment_rule::CheckFieldValue(), CComment_rule::CheckGeneralField(), CTableAnnotDataSource::CreateFeature(), CTableAnnotDataSource::CreateSnpFeature(), CTableAnnotDataSource::CreateSnps(), CSequenceEditingEventHandler::DeleteSpecificStructuredComment(), CTableAnnotDataSource::FindLocations(), CFlatModelEvQVal::Format(), CRegistryFile::FromConfigFile(), CBioseq_Info::GetFeatureFetchPolicy(), GetFieldValueAsString(), CGenomeAnnotComment::GetGenomeBuildNumber(), GetHasFrameShift(), GetHasOrderAssignment(), GetLowTrace(), GetPrefixOrSuffixType(), CProductStringBuilder::GetProductString(), CUser_object::GetRefGeneTrackingStatus(), CCommentItem::GetRefTrackStatus(), CSGSeqGraphJob::GetSeqtableAnnots(), CCommentItem::GetStringForBankIt(), CCommentItem::GetStringForRefTrack(), CCommentItem::GetStringForTLS(), CCommentItem::GetStringForTSA(), CCommentItem::GetStringForWGS(), CFlatGoQVal::GetTextString(), CSequenceTrack::GetTooltip(), CGuiObjectInfoSeq_align::GetToolTip(), CGuiObjectInfoVariation::GetToolTip(), CReadUtil::GetTrackValue(), CBankITCommentField::GetVals(), CLocalIDField::GetVals(), CEditingActionDescGenomeProjectId::GetValue(), CEditingActionDescStructCommDbName::GetValue(), CSeqTableReader::Init(), CPhyloSelectionSet::InitFromUserObject(), CIntronGlyph::IsConsensus(), CLocalIDField::IsEmpty(), IsMatchingIdMissing(), CComment_rule::IsValid(), CTableImportColumn::LoadAsn(), CTestApplication::LoadTable(), CPhyTreeView::OnBioTreeChanged(), CPhyTreeView::OnSomethingEdited(), SSNP_Info::ParseSeq_feat(), CRegistryReadView::ResolveField(), RestoreModelAttributes(), s_CheckTraceMateAlign(), CCleanup::s_CleanupGeneOntology(), CCleanup::s_CleanupGenomeAssembly(), CCleanup::s_CleanupStructuredComment(), s_FastaGetOriginalID(), s_FieldHasNonBlankValue(), s_GetAssemblyInfo(), s_GetEncodeValues(), s_GetModelEvidance(), s_GetMrnaProteinLink(), s_GetOriginalID(), s_GetSpliceSite(), s_HasRefSeqPGAPStructuredComment(), s_IsGenomeAnnotationStart(), s_IsGnomonModel(), CMacroFunction_RemoveQual::s_RemoveFields(), s_SeqDescCompare(), CDBLinkField::SetVal(), CStructuredCommentField::SetVal(), sGetMethodFromModelEvidence(), CMacroFunction_ParseToStructComm::TheFunction(), CGuiObjectInfoSeq_align::x_AddUserObject(), x_AlmostEquals(), CBioseqContext::x_CheckForShowComments(), CSNPSearchJob::x_DoSearch(), CDensegGraphicDataSource::x_GetCigarStr(), CDensegGraphicDataSource::x_GetMismatchStr(), CUser_object::x_GetRefGeneTrackingField(), CModifySeqId::x_GetRemoveOriginalIdCommand(), CMacroFunction_ParsedText::x_GetSpecialField(), CCommonComponentScorer::x_GetUserCompList(), CFeatureItem::x_HasMethodtRNAscanSE(), CValidError_bioseq::x_HasPGAPStructuredComment(), CBioseqIndex::x_InitDescs(), CUser_object::x_IsUnreviewedType(), CUser_object::x_IsUnverifiedType(), CSGAnnotJob::x_PercentileButNotMax(), CBioseqContext::x_SetDataFromUserObjects(), CDeflineGenerator::x_SetFlags(), CAutoDefOptions::x_SetSuppressedFeatures(), CValidError_desc::x_ValidateStructuredCommentSuffix(), and CSrcWriter::xGetOriginalId().

IsStrs()

bool CUser_field_Base::C_Data::IsStrs ( void  ) const

inline

Check if variant Strs is selected.

Strs type is defined as 'typedef vector< CStringUTF8 > TStrs'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 815 of file User_field_.hpp.

Referenced by GetDBLinkIDs(), GetFieldValueAsString(), s_AddNewDBlinkValue(), s_AddNewUserField(), s_FieldHasNonBlankValue(), s_GatherExistingValues(), CMacroFunction_RemoveQual::s_RemoveFields(), CDBLinkField::SetVal(), CEditingActionDescUserObject::SetValue(), CMacroFunction_AddDBLink::TheFunction(), CValidError_desc::ValidateDblink(), and CAutoDefOptions::x_SetSuppressedFeatures().

operator=() [1/11]

C_Data& CUser_field_Base::C_Data::operator= ( const C_Data &  )

private

operator=() [2/11]

C_Range& CInt_fuzz_Base::C_Range::operator= ( const C_Range &  )

private

operator=() [3/11]

CDate_Base& CDate_Base::operator= ( const CDate_Base &  )

private

operator=() [4/11]

CDate_std_Base& CDate_std_Base::operator= ( const CDate_std_Base &  )

private

operator=() [5/11]

CDbtag_Base& CDbtag_Base::operator= ( const CDbtag_Base &  )

private

operator=() [6/11]

CInt_fuzz_Base& CInt_fuzz_Base::operator= ( const CInt_fuzz_Base &  )

private

operator=() [7/11]

CName_std_Base& CName_std_Base::operator= ( const CName_std_Base &  )

private

operator=() [8/11]

CObject_id_Base& CObject_id_Base::operator= ( const CObject_id_Base &  )