Code generated by DATATOOL from 'general.asn' (module 'NCBI-General')

Collaboration diagram for Code generated by DATATOOL from 'general.asn' (module 'NCBI-General'):

Classes
class	CDate_Base
	StringStore is really a VisibleString. More...
class	CDate_std_Base
	NOTE: this is NOT a unix tm struct. More...
class	CDbtag_Base
	Dbtag is generalized for tagging eg. More...
class	CInt_fuzz_Base
	**** Int-fuzz ********************************************** * * uncertainties in integer values More...
class	CInt_fuzz_Base::C_Range
	max to min More...
class	CName_std_Base
	Structured names. More...
class	CObject_id_Base
	Object-id can tag or name anything. More...
class	CPerson_id_Base
	Person-id is to define a std element for people. More...
class	CUser_field_Base
	CUser_field_Base –. More...
class	CUser_field_Base::C_Data
	field contents More...
class	CUser_object_Base
	**** User-object ********************************************** * * a general object for a user defined structured data item * used by Seq-feat and Seq-descr More...

Typedefs
typedef CSerialObject	CDate_Base::Tparent
typedef string	CDate_Base::TStr
typedef CDate_std	CDate_Base::TStd
typedef CSerialObject	CDate_std_Base::Tparent
typedef int	CDate_std_Base::TYear
typedef int	CDate_std_Base::TMonth
typedef int	CDate_std_Base::TDay
typedef string	CDate_std_Base::TSeason
typedef int	CDate_std_Base::THour
typedef int	CDate_std_Base::TMinute
typedef int	CDate_std_Base::TSecond
typedef Tparent::CMemberIndex< E_memberIndex, 8 >	CDate_std_Base::TmemberIndex
typedef CSerialObject	CDbtag_Base::Tparent
typedef string	CDbtag_Base::TDb
typedef CObject_id	CDbtag_Base::TTag
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CDbtag_Base::TmemberIndex
typedef CSerialObject	CInt_fuzz_Base::Tparent
typedef CSerialObject	CInt_fuzz_Base::C_Range::Tparent
typedef TSeqPos	CInt_fuzz_Base::C_Range::TMax
typedef TSeqPos	CInt_fuzz_Base::C_Range::TMin
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CInt_fuzz_Base::C_Range::TmemberIndex
typedef TSeqPos	CInt_fuzz_Base::TP_m
typedef C_Range	CInt_fuzz_Base::TRange
typedef int	CInt_fuzz_Base::TPct
typedef ELim	CInt_fuzz_Base::TLim
typedef list< TSeqPos >	CInt_fuzz_Base::TAlt
typedef CSerialObject	CName_std_Base::Tparent
typedef string	CName_std_Base::TLast
typedef string	CName_std_Base::TFirst
typedef string	CName_std_Base::TMiddle
typedef string	CName_std_Base::TFull
typedef string	CName_std_Base::TInitials
typedef string	CName_std_Base::TSuffix
typedef string	CName_std_Base::TTitle
typedef Tparent::CMemberIndex< E_memberIndex, 8 >	CName_std_Base::TmemberIndex
typedef CSerialObject	CObject_id_Base::Tparent
typedef int	CObject_id_Base::TId
typedef string	CObject_id_Base::TStr
typedef CSerialObject	CPerson_id_Base::Tparent
typedef CDbtag	CPerson_id_Base::TDbtag
typedef CName_std	CPerson_id_Base::TName
typedef string	CPerson_id_Base::TMl
typedef string	CPerson_id_Base::TStr
typedef string	CPerson_id_Base::TConsortium
typedef CSerialObject	CUser_field_Base::Tparent
typedef CSerialObject	CUser_field_Base::C_Data::Tparent
typedef CStringUTF8	CUser_field_Base::C_Data::TStr
typedef int	CUser_field_Base::C_Data::TInt
typedef double	CUser_field_Base::C_Data::TReal
typedef bool	CUser_field_Base::C_Data::TBool
typedef vector< char >	CUser_field_Base::C_Data::TOs
typedef CUser_object	CUser_field_Base::C_Data::TObject
typedef vector< CStringUTF8 >	CUser_field_Base::C_Data::TStrs
typedef vector< int >	CUser_field_Base::C_Data::TInts
typedef vector< double >	CUser_field_Base::C_Data::TReals
typedef vector< vector< char > * >	CUser_field_Base::C_Data::TOss
typedef vector< CRef< CUser_field > >	CUser_field_Base::C_Data::TFields
typedef vector< CRef< CUser_object > >	CUser_field_Base::C_Data::TObjects
typedef CObject_id	CUser_field_Base::TLabel
typedef int	CUser_field_Base::TNum
typedef C_Data	CUser_field_Base::TData
typedef Tparent::CMemberIndex< E_memberIndex, 4 >	CUser_field_Base::TmemberIndex
typedef CSerialObject	CUser_object_Base::Tparent
typedef string	CUser_object_Base::TClass
typedef CObject_id	CUser_object_Base::TType
typedef vector< CRef< CUser_field > >	CUser_object_Base::TData
typedef Tparent::CMemberIndex< E_memberIndex, 4 >	CUser_object_Base::TmemberIndex

Enumerations
enum	CDate_Base::E_Choice { CDate_Base::e_not_set = 0 , CDate_Base::e_Str , CDate_Base::e_Std }
	Choice variants. More...
enum	CDate_Base::E_ChoiceStopper { CDate_Base::e_MaxChoice = 3 }
	Maximum+1 value of the choice variant enumerator. More...
enum class	CDate_std_Base::E_memberIndex {   CDate_std_Base::e__allMandatory = 0 , CDate_std_Base::e_year , CDate_std_Base::e_month , CDate_std_Base::e_day ,   CDate_std_Base::e_season , CDate_std_Base::e_hour , CDate_std_Base::e_minute , CDate_std_Base::e_second }
enum class	CDbtag_Base::E_memberIndex { CDbtag_Base::e__allMandatory = 0 , CDbtag_Base::e_db , CDbtag_Base::e_tag }
enum class	CInt_fuzz_Base::C_Range::E_memberIndex { CInt_fuzz_Base::C_Range::e__allMandatory = 0 , CInt_fuzz_Base::C_Range::e_max , CInt_fuzz_Base::C_Range::e_min }
enum	CInt_fuzz_Base::ELim {   CInt_fuzz_Base::eLim_unk = 0 , CInt_fuzz_Base::eLim_gt = 1 , CInt_fuzz_Base::eLim_lt = 2 , CInt_fuzz_Base::eLim_tr = 3 ,   CInt_fuzz_Base::eLim_tl = 4 , CInt_fuzz_Base::eLim_circle = 5 , CInt_fuzz_Base::eLim_other = 255 }
	some limit value More...
enum	CInt_fuzz_Base::E_Choice {   CInt_fuzz_Base::e_not_set = 0 , CInt_fuzz_Base::e_P_m , CInt_fuzz_Base::e_Range , CInt_fuzz_Base::e_Pct ,   CInt_fuzz_Base::e_Lim , CInt_fuzz_Base::e_Alt }
	Choice variants. More...
enum	CInt_fuzz_Base::E_ChoiceStopper { CInt_fuzz_Base::e_MaxChoice = 6 }
	Maximum+1 value of the choice variant enumerator. More...
enum class	CName_std_Base::E_memberIndex {   CName_std_Base::e__allMandatory = 0 , CName_std_Base::e_last , CName_std_Base::e_first , CName_std_Base::e_middle ,   CName_std_Base::e_full , CName_std_Base::e_initials , CName_std_Base::e_suffix , CName_std_Base::e_title }
enum	CObject_id_Base::E_Choice { CObject_id_Base::e_not_set = 0 , CObject_id_Base::e_Id , CObject_id_Base::e_Str }
	Choice variants. More...
enum	CObject_id_Base::E_ChoiceStopper { CObject_id_Base::e_MaxChoice = 3 }
	Maximum+1 value of the choice variant enumerator. More...
enum	CPerson_id_Base::E_Choice {   CPerson_id_Base::e_not_set = 0 , CPerson_id_Base::e_Dbtag , CPerson_id_Base::e_Name , CPerson_id_Base::e_Ml ,   CPerson_id_Base::e_Str , CPerson_id_Base::e_Consortium }
	Choice variants. More...
enum	CPerson_id_Base::E_ChoiceStopper { CPerson_id_Base::e_MaxChoice = 6 }
	Maximum+1 value of the choice variant enumerator. More...
enum	CUser_field_Base::C_Data::E_Choice {   CUser_field_Base::C_Data::e_not_set = 0 , CUser_field_Base::C_Data::e_Str , CUser_field_Base::C_Data::e_Int , CUser_field_Base::C_Data::e_Real ,   CUser_field_Base::C_Data::e_Bool , CUser_field_Base::C_Data::e_Os , CUser_field_Base::C_Data::e_Object , CUser_field_Base::C_Data::e_Strs ,   CUser_field_Base::C_Data::e_Ints , CUser_field_Base::C_Data::e_Reals , CUser_field_Base::C_Data::e_Oss , CUser_field_Base::C_Data::e_Fields ,   CUser_field_Base::C_Data::e_Objects }
	Choice variants. More...
enum	CUser_field_Base::C_Data::E_ChoiceStopper { CUser_field_Base::C_Data::e_MaxChoice = 13 }
	Maximum+1 value of the choice variant enumerator. More...
enum class	CUser_field_Base::E_memberIndex { CUser_field_Base::e__allMandatory = 0 , CUser_field_Base::e_label , CUser_field_Base::e_num , CUser_field_Base::e_data }
enum class	CUser_object_Base::E_memberIndex { CUser_object_Base::e__allMandatory = 0 , CUser_object_Base::e_class , CUser_object_Base::e_type , CUser_object_Base::e_data }

Functions
	CDate_Base::CDate_Base (void)
virtual	CDate_Base::~CDate_Base (void)
	CDate_Base::DECLARE_INTERNAL_TYPE_INFO ()
virtual void	CDate_Base::Reset (void)
	Reset the whole object. More...
virtual void	CDate_Base::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CDate_Base::Which (void) const
	Which variant is currently selected. More...
void	CDate_Base::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CDate_Base::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CDate_Base::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CDate_Base::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CDate_Base::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CDate_Base::IsStr (void) const
	Check if variant Str is selected. More...
const TStr &	CDate_Base::GetStr (void) const
	Get the variant data. More...
TStr &	CDate_Base::SetStr (void)
	Select the variant. More...
void	CDate_Base::SetStr (const TStr &value)
	Select the variant and set its data. More...
bool	CDate_Base::IsStd (void) const
	Check if variant Std is selected. More...
const TStd &	CDate_Base::GetStd (void) const
	Get the variant data. More...
TStd &	CDate_Base::SetStd (void)
	Select the variant. More...
void	CDate_Base::SetStd (TStd &value)
	Select the variant and set its data. More...
	CDate_Base::CDate_Base (const CDate_Base &)
CDate_Base &	CDate_Base::operator= (const CDate_Base &)
void	CDate_Base::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
	CDate_std_Base::CDate_std_Base (void)
virtual	CDate_std_Base::~CDate_std_Base (void)
	CDate_std_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CDate_std_Base::IsSetYear (void) const
	full year (including 1900) Check if a value has been assigned to Year data member. More...
bool	CDate_std_Base::CanGetYear (void) const
	Check if it is safe to call GetYear method. More...
void	CDate_std_Base::ResetYear (void)
	Reset Year data member. More...
TYear	CDate_std_Base::GetYear (void) const
	Get the Year member data. More...
void	CDate_std_Base::SetYear (TYear value)
	Assign a value to Year data member. More...
TYear &	CDate_std_Base::SetYear (void)
	Assign a value to Year data member. More...
bool	CDate_std_Base::IsSetMonth (void) const
	month (1-12) Check if a value has been assigned to Month data member. More...
bool	CDate_std_Base::CanGetMonth (void) const
	Check if it is safe to call GetMonth method. More...
void	CDate_std_Base::ResetMonth (void)
	Reset Month data member. More...
TMonth	CDate_std_Base::GetMonth (void) const
	Get the Month member data. More...
void	CDate_std_Base::SetMonth (TMonth value)
	Assign a value to Month data member. More...
TMonth &	CDate_std_Base::SetMonth (void)
	Assign a value to Month data member. More...
bool	CDate_std_Base::IsSetDay (void) const
	day of month (1-31) Check if a value has been assigned to Day data member. More...
bool	CDate_std_Base::CanGetDay (void) const
	Check if it is safe to call GetDay method. More...
void	CDate_std_Base::ResetDay (void)
	Reset Day data member. More...
TDay	CDate_std_Base::GetDay (void) const
	Get the Day member data. More...
void	CDate_std_Base::SetDay (TDay value)
	Assign a value to Day data member. More...
TDay &	CDate_std_Base::SetDay (void)
	Assign a value to Day data member. More...
bool	CDate_std_Base::IsSetSeason (void) const
	for "spring", "may-june", etc Check if a value has been assigned to Season data member. More...
bool	CDate_std_Base::CanGetSeason (void) const
	Check if it is safe to call GetSeason method. More...
void	CDate_std_Base::ResetSeason (void)
	Reset Season data member. More...
const TSeason &	CDate_std_Base::GetSeason (void) const
	Get the Season member data. More...
void	CDate_std_Base::SetSeason (const TSeason &value)
	Assign a value to Season data member. More...
void	CDate_std_Base::SetSeason (TSeason &&value)
TSeason &	CDate_std_Base::SetSeason (void)
	Assign a value to Season data member. More...
bool	CDate_std_Base::IsSetHour (void) const
	hour of day (0-23) Check if a value has been assigned to Hour data member. More...
bool	CDate_std_Base::CanGetHour (void) const
	Check if it is safe to call GetHour method. More...
void	CDate_std_Base::ResetHour (void)
	Reset Hour data member. More...
THour	CDate_std_Base::GetHour (void) const
	Get the Hour member data. More...
void	CDate_std_Base::SetHour (THour value)
	Assign a value to Hour data member. More...
THour &	CDate_std_Base::SetHour (void)
	Assign a value to Hour data member. More...
bool	CDate_std_Base::IsSetMinute (void) const
	minute of hour (0-59) Check if a value has been assigned to Minute data member. More...
bool	CDate_std_Base::CanGetMinute (void) const
	Check if it is safe to call GetMinute method. More...
void	CDate_std_Base::ResetMinute (void)
	Reset Minute data member. More...
TMinute	CDate_std_Base::GetMinute (void) const
	Get the Minute member data. More...
void	CDate_std_Base::SetMinute (TMinute value)
	Assign a value to Minute data member. More...
TMinute &	CDate_std_Base::SetMinute (void)
	Assign a value to Minute data member. More...
bool	CDate_std_Base::IsSetSecond (void) const
	second of minute (0-59) Check if a value has been assigned to Second data member. More...
bool	CDate_std_Base::CanGetSecond (void) const
	Check if it is safe to call GetSecond method. More...
void	CDate_std_Base::ResetSecond (void)
	Reset Second data member. More...
TSecond	CDate_std_Base::GetSecond (void) const
	Get the Second member data. More...
void	CDate_std_Base::SetSecond (TSecond value)
	Assign a value to Second data member. More...
TSecond &	CDate_std_Base::SetSecond (void)
	Assign a value to Second data member. More...
virtual void	CDate_std_Base::Reset (void)
	Reset the whole object. More...
	CDate_std_Base::CDate_std_Base (const CDate_std_Base &)
CDate_std_Base &	CDate_std_Base::operator= (const CDate_std_Base &)
	CDbtag_Base::CDbtag_Base (void)
virtual	CDbtag_Base::~CDbtag_Base (void)
	CDbtag_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CDbtag_Base::IsSetDb (void) const
	name of database or system Check if a value has been assigned to Db data member. More...
bool	CDbtag_Base::CanGetDb (void) const
	Check if it is safe to call GetDb method. More...
void	CDbtag_Base::ResetDb (void)
	Reset Db data member. More...
const TDb &	CDbtag_Base::GetDb (void) const
	Get the Db member data. More...
void	CDbtag_Base::SetDb (const TDb &value)
	Assign a value to Db data member. More...
void	CDbtag_Base::SetDb (TDb &&value)
TDb &	CDbtag_Base::SetDb (void)
	Assign a value to Db data member. More...
bool	CDbtag_Base::IsSetTag (void) const
	appropriate tag Check if a value has been assigned to Tag data member. More...
bool	CDbtag_Base::CanGetTag (void) const
	Check if it is safe to call GetTag method. More...
void	CDbtag_Base::ResetTag (void)
	Reset Tag data member. More...
const TTag &	CDbtag_Base::GetTag (void) const
	Get the Tag member data. More...
void	CDbtag_Base::SetTag (TTag &value)
	Assign a value to Tag data member. More...
TTag &	CDbtag_Base::SetTag (void)
	Assign a value to Tag data member. More...
virtual void	CDbtag_Base::Reset (void)
	Reset the whole object. More...
	CDbtag_Base::CDbtag_Base (const CDbtag_Base &)
CDbtag_Base &	CDbtag_Base::operator= (const CDbtag_Base &)
	CInt_fuzz_Base::CInt_fuzz_Base (void)
virtual	CInt_fuzz_Base::~CInt_fuzz_Base (void)
	CInt_fuzz_Base::DECLARE_INTERNAL_TYPE_INFO ()
	CInt_fuzz_Base::C_Range::C_Range (void)
	CInt_fuzz_Base::C_Range::~C_Range (void)
	CInt_fuzz_Base::C_Range::DECLARE_INTERNAL_TYPE_INFO ()
bool	CInt_fuzz_Base::C_Range::IsSetMax (void) const
	Check if a value has been assigned to Max data member. More...
bool	CInt_fuzz_Base::C_Range::CanGetMax (void) const
	Check if it is safe to call GetMax method. More...
void	CInt_fuzz_Base::C_Range::ResetMax (void)
	Reset Max data member. More...
TMax	CInt_fuzz_Base::C_Range::GetMax (void) const
	Get the Max member data. More...
void	CInt_fuzz_Base::C_Range::SetMax (TMax value)
	Assign a value to Max data member. More...
TMax &	CInt_fuzz_Base::C_Range::SetMax (void)
	Assign a value to Max data member. More...
bool	CInt_fuzz_Base::C_Range::IsSetMin (void) const
	Check if a value has been assigned to Min data member. More...
bool	CInt_fuzz_Base::C_Range::CanGetMin (void) const
	Check if it is safe to call GetMin method. More...
void	CInt_fuzz_Base::C_Range::ResetMin (void)
	Reset Min data member. More...
TMin	CInt_fuzz_Base::C_Range::GetMin (void) const
	Get the Min member data. More...
void	CInt_fuzz_Base::C_Range::SetMin (TMin value)
	Assign a value to Min data member. More...
TMin &	CInt_fuzz_Base::C_Range::SetMin (void)
	Assign a value to Min data member. More...
void	CInt_fuzz_Base::C_Range::Reset (void)
	Reset the whole object. More...
	CInt_fuzz_Base::C_Range::C_Range (const C_Range &)
C_Range &	CInt_fuzz_Base::C_Range::operator= (const C_Range &)
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CInt_fuzz_Base::ELim (void)
	Access to ELim's attributes (values, names) as defined in spec. More...
virtual void	CInt_fuzz_Base::Reset (void)
	Reset the whole object. More...
virtual void	CInt_fuzz_Base::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CInt_fuzz_Base::Which (void) const
	Which variant is currently selected. More...
void	CInt_fuzz_Base::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CInt_fuzz_Base::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CInt_fuzz_Base::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CInt_fuzz_Base::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CInt_fuzz_Base::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CInt_fuzz_Base::IsP_m (void) const
	Check if variant P_m is selected. More...
TP_m	CInt_fuzz_Base::GetP_m (void) const
	Get the variant data. More...
TP_m &	CInt_fuzz_Base::SetP_m (void)
	Select the variant. More...
void	CInt_fuzz_Base::SetP_m (TP_m value)
	Select the variant and set its data. More...
bool	CInt_fuzz_Base::IsRange (void) const
	Check if variant Range is selected. More...
const TRange &	CInt_fuzz_Base::GetRange (void) const
	Get the variant data. More...
TRange &	CInt_fuzz_Base::SetRange (void)
	Select the variant. More...
void	CInt_fuzz_Base::SetRange (TRange &value)
	Select the variant and set its data. More...
bool	CInt_fuzz_Base::IsPct (void) const
	Check if variant Pct is selected. More...
TPct	CInt_fuzz_Base::GetPct (void) const
	Get the variant data. More...
TPct &	CInt_fuzz_Base::SetPct (void)
	Select the variant. More...
void	CInt_fuzz_Base::SetPct (TPct value)
	Select the variant and set its data. More...
bool	CInt_fuzz_Base::IsLim (void) const
	Check if variant Lim is selected. More...
TLim	CInt_fuzz_Base::GetLim (void) const
	Get the variant data. More...
TLim &	CInt_fuzz_Base::SetLim (void)
	Select the variant. More...
void	CInt_fuzz_Base::SetLim (TLim value)
	Select the variant and set its data. More...
bool	CInt_fuzz_Base::IsAlt (void) const
	Check if variant Alt is selected. More...
const TAlt &	CInt_fuzz_Base::GetAlt (void) const
	Get the variant data. More...
TAlt &	CInt_fuzz_Base::SetAlt (void)
	Select the variant. More...
	CInt_fuzz_Base::CInt_fuzz_Base (const CInt_fuzz_Base &)
CInt_fuzz_Base &	CInt_fuzz_Base::operator= (const CInt_fuzz_Base &)
void	CInt_fuzz_Base::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
	CName_std_Base::CName_std_Base (void)
virtual	CName_std_Base::~CName_std_Base (void)
	CName_std_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CName_std_Base::IsSetLast (void) const
	Check if a value has been assigned to Last data member. More...
bool	CName_std_Base::CanGetLast (void) const
	Check if it is safe to call GetLast method. More...
void	CName_std_Base::ResetLast (void)
	Reset Last data member. More...
const TLast &	CName_std_Base::GetLast (void) const
	Get the Last member data. More...
void	CName_std_Base::SetLast (const TLast &value)
	Assign a value to Last data member. More...
void	CName_std_Base::SetLast (TLast &&value)
TLast &	CName_std_Base::SetLast (void)
	Assign a value to Last data member. More...
bool	CName_std_Base::IsSetFirst (void) const
	Check if a value has been assigned to First data member. More...
bool	CName_std_Base::CanGetFirst (void) const
	Check if it is safe to call GetFirst method. More...
void	CName_std_Base::ResetFirst (void)
	Reset First data member. More...
const TFirst &	CName_std_Base::GetFirst (void) const
	Get the First member data. More...
void	CName_std_Base::SetFirst (const TFirst &value)
	Assign a value to First data member. More...
void	CName_std_Base::SetFirst (TFirst &&value)
TFirst &	CName_std_Base::SetFirst (void)
	Assign a value to First data member. More...
bool	CName_std_Base::IsSetMiddle (void) const
	Check if a value has been assigned to Middle data member. More...
bool	CName_std_Base::CanGetMiddle (void) const
	Check if it is safe to call GetMiddle method. More...
void	CName_std_Base::ResetMiddle (void)
	Reset Middle data member. More...
const TMiddle &	CName_std_Base::GetMiddle (void) const
	Get the Middle member data. More...
void	CName_std_Base::SetMiddle (const TMiddle &value)
	Assign a value to Middle data member. More...
void	CName_std_Base::SetMiddle (TMiddle &&value)
TMiddle &	CName_std_Base::SetMiddle (void)
	Assign a value to Middle data member. More...
bool	CName_std_Base::IsSetFull (void) const
	full name eg. More...
bool	CName_std_Base::CanGetFull (void) const
	Check if it is safe to call GetFull method. More...
void	CName_std_Base::ResetFull (void)
	Reset Full data member. More...
const TFull &	CName_std_Base::GetFull (void) const
	Get the Full member data. More...
void	CName_std_Base::SetFull (const TFull &value)
	Assign a value to Full data member. More...
void	CName_std_Base::SetFull (TFull &&value)
TFull &	CName_std_Base::SetFull (void)
	Assign a value to Full data member. More...
bool	CName_std_Base::IsSetInitials (void) const
	first + middle initials Check if a value has been assigned to Initials data member. More...
bool	CName_std_Base::CanGetInitials (void) const
	Check if it is safe to call GetInitials method. More...
void	CName_std_Base::ResetInitials (void)
	Reset Initials data member. More...
const TInitials &	CName_std_Base::GetInitials (void) const
	Get the Initials member data. More...
void	CName_std_Base::SetInitials (const TInitials &value)
	Assign a value to Initials data member. More...
void	CName_std_Base::SetInitials (TInitials &&value)
TInitials &	CName_std_Base::SetInitials (void)
	Assign a value to Initials data member. More...
bool	CName_std_Base::IsSetSuffix (void) const
	Jr, Sr, III Check if a value has been assigned to Suffix data member. More...
bool	CName_std_Base::CanGetSuffix (void) const
	Check if it is safe to call GetSuffix method. More...
void	CName_std_Base::ResetSuffix (void)
	Reset Suffix data member. More...
const TSuffix &	CName_std_Base::GetSuffix (void) const
	Get the Suffix member data. More...
void	CName_std_Base::SetSuffix (const TSuffix &value)
	Assign a value to Suffix data member. More...
void	CName_std_Base::SetSuffix (TSuffix &&value)
TSuffix &	CName_std_Base::SetSuffix (void)
	Assign a value to Suffix data member. More...
bool	CName_std_Base::IsSetTitle (void) const
	Dr., Sister, etc Check if a value has been assigned to Title data member. More...
bool	CName_std_Base::CanGetTitle (void) const
	Check if it is safe to call GetTitle method. More...
void	CName_std_Base::ResetTitle (void)
	Reset Title data member. More...
const TTitle &	CName_std_Base::GetTitle (void) const
	Get the Title member data. More...
void	CName_std_Base::SetTitle (const TTitle &value)
	Assign a value to Title data member. More...
void	CName_std_Base::SetTitle (TTitle &&value)
TTitle &	CName_std_Base::SetTitle (void)
	Assign a value to Title data member. More...
virtual void	CName_std_Base::Reset (void)
	Reset the whole object. More...
	CName_std_Base::CName_std_Base (const CName_std_Base &)
CName_std_Base &	CName_std_Base::operator= (const CName_std_Base &)
	CObject_id_Base::CObject_id_Base (void)
virtual	CObject_id_Base::~CObject_id_Base (void)
	CObject_id_Base::DECLARE_INTERNAL_TYPE_INFO ()
virtual void	CObject_id_Base::Reset (void)
	Reset the whole object. More...
virtual void	CObject_id_Base::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CObject_id_Base::Which (void) const
	Which variant is currently selected. More...
void	CObject_id_Base::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CObject_id_Base::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CObject_id_Base::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CObject_id_Base::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CObject_id_Base::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CObject_id_Base::IsId (void) const
	Check if variant Id is selected. More...
TId	CObject_id_Base::GetId (void) const
	Get the variant data. More...
TId &	CObject_id_Base::SetId (void)
	Select the variant. More...
void	CObject_id_Base::SetId (TId value)
	Select the variant and set its data. More...
bool	CObject_id_Base::IsStr (void) const
	Check if variant Str is selected. More...
const TStr &	CObject_id_Base::GetStr (void) const
	Get the variant data. More...
TStr &	CObject_id_Base::SetStr (void)
	Select the variant. More...
void	CObject_id_Base::SetStr (const TStr &value)
	Select the variant and set its data. More...
	CObject_id_Base::CObject_id_Base (const CObject_id_Base &)
CObject_id_Base &	CObject_id_Base::operator= (const CObject_id_Base &)
void	CObject_id_Base::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
	CPerson_id_Base::CPerson_id_Base (void)
virtual	CPerson_id_Base::~CPerson_id_Base (void)
	CPerson_id_Base::DECLARE_INTERNAL_TYPE_INFO ()
virtual void	CPerson_id_Base::Reset (void)
	Reset the whole object. More...
virtual void	CPerson_id_Base::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CPerson_id_Base::Which (void) const
	Which variant is currently selected. More...
void	CPerson_id_Base::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CPerson_id_Base::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CPerson_id_Base::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CPerson_id_Base::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CPerson_id_Base::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CPerson_id_Base::IsDbtag (void) const
	Check if variant Dbtag is selected. More...
const TDbtag &	CPerson_id_Base::GetDbtag (void) const
	Get the variant data. More...
TDbtag &	CPerson_id_Base::SetDbtag (void)
	Select the variant. More...
void	CPerson_id_Base::SetDbtag (TDbtag &value)
	Select the variant and set its data. More...
bool	CPerson_id_Base::IsName (void) const
	Check if variant Name is selected. More...
const TName &	CPerson_id_Base::GetName (void) const
	Get the variant data. More...
TName &	CPerson_id_Base::SetName (void)
	Select the variant. More...
void	CPerson_id_Base::SetName (TName &value)
	Select the variant and set its data. More...
bool	CPerson_id_Base::IsMl (void) const
	Check if variant Ml is selected. More...
const TMl &	CPerson_id_Base::GetMl (void) const
	Get the variant data. More...
TMl &	CPerson_id_Base::SetMl (void)
	Select the variant. More...
void	CPerson_id_Base::SetMl (const TMl &value)
	Select the variant and set its data. More...
bool	CPerson_id_Base::IsStr (void) const
	Check if variant Str is selected. More...
const TStr &	CPerson_id_Base::GetStr (void) const
	Get the variant data. More...
TStr &	CPerson_id_Base::SetStr (void)
	Select the variant. More...
void	CPerson_id_Base::SetStr (const TStr &value)
	Select the variant and set its data. More...
bool	CPerson_id_Base::IsConsortium (void) const
	Check if variant Consortium is selected. More...
const TConsortium &	CPerson_id_Base::GetConsortium (void) const
	Get the variant data. More...
TConsortium &	CPerson_id_Base::SetConsortium (void)
	Select the variant. More...
void	CPerson_id_Base::SetConsortium (const TConsortium &value)
	Select the variant and set its data. More...
	CPerson_id_Base::CPerson_id_Base (const CPerson_id_Base &)
CPerson_id_Base &	CPerson_id_Base::operator= (const CPerson_id_Base &)
void	CPerson_id_Base::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
	CUser_field_Base::CUser_field_Base (void)
virtual	CUser_field_Base::~CUser_field_Base (void)
	CUser_field_Base::DECLARE_INTERNAL_TYPE_INFO ()
	CUser_field_Base::C_Data::C_Data (void)
	CUser_field_Base::C_Data::~C_Data (void)
	CUser_field_Base::C_Data::DECLARE_INTERNAL_TYPE_INFO ()
void	CUser_field_Base::C_Data::Reset (void)
	Reset the whole object. More...
void	CUser_field_Base::C_Data::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CUser_field_Base::C_Data::Which (void) const
	Which variant is currently selected. More...
void	CUser_field_Base::C_Data::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CUser_field_Base::C_Data::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CUser_field_Base::C_Data::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CUser_field_Base::C_Data::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CUser_field_Base::C_Data::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CUser_field_Base::C_Data::IsStr (void) const
	Check if variant Str is selected. More...
const TStr &	CUser_field_Base::C_Data::GetStr (void) const
	Get the variant data. More...
TStr &	CUser_field_Base::C_Data::SetStr (void)
	Select the variant. More...
void	CUser_field_Base::C_Data::SetStr (const TStr &value)
	Select the variant and set its data. More...
bool	CUser_field_Base::C_Data::IsInt (void) const
	Check if variant Int is selected. More...
TInt	CUser_field_Base::C_Data::GetInt (void) const
	Get the variant data. More...
TInt &	CUser_field_Base::C_Data::SetInt (void)
	Select the variant. More...
void	CUser_field_Base::C_Data::SetInt (TInt value)
	Select the variant and set its data. More...
bool	CUser_field_Base::C_Data::IsReal (void) const
	Check if variant Real is selected. More...
TReal	CUser_field_Base::C_Data::GetReal (void) const
	Get the variant data. More...
TReal &	CUser_field_Base::C_Data::SetReal (void)
	Select the variant. More...
void	CUser_field_Base::C_Data::SetReal (TReal value)
	Select the variant and set its data. More...
bool	CUser_field_Base::C_Data::IsBool (void) const
	Check if variant Bool is selected. More...
TBool	CUser_field_Base::C_Data::GetBool (void) const
	Get the variant data. More...
TBool &	CUser_field_Base::C_Data::SetBool (void)
	Select the variant. More...
void	CUser_field_Base::C_Data::SetBool (TBool value)
	Select the variant and set its data. More...
bool	CUser_field_Base::C_Data::IsOs (void) const
	Check if variant Os is selected. More...
const TOs &	CUser_field_Base::C_Data::GetOs (void) const
	Get the variant data. More...
TOs &	CUser_field_Base::C_Data::SetOs (void)
	Select the variant. More...
bool	CUser_field_Base::C_Data::IsObject (void) const
	Check if variant Object is selected. More...
const TObject &	CUser_field_Base::C_Data::GetObject (void) const
	Get the variant data. More...
TObject &	CUser_field_Base::C_Data::SetObject (void)
	Select the variant. More...
void	CUser_field_Base::C_Data::SetObject (TObject &value)
	Select the variant and set its data. More...
bool	CUser_field_Base::C_Data::IsStrs (void) const
	Check if variant Strs is selected. More...
const TStrs &	CUser_field_Base::C_Data::GetStrs (void) const
	Get the variant data. More...
TStrs &	CUser_field_Base::C_Data::SetStrs (void)
	Select the variant. More...
bool	CUser_field_Base::C_Data::IsInts (void) const
	Check if variant Ints is selected. More...
const TInts &	CUser_field_Base::C_Data::GetInts (void) const
	Get the variant data. More...
TInts &	CUser_field_Base::C_Data::SetInts (void)
	Select the variant. More...
bool	CUser_field_Base::C_Data::IsReals (void) const
	Check if variant Reals is selected. More...
const TReals &	CUser_field_Base::C_Data::GetReals (void) const
	Get the variant data. More...
TReals &	CUser_field_Base::C_Data::SetReals (void)
	Select the variant. More...
bool	CUser_field_Base::C_Data::IsOss (void) const
	Check if variant Oss is selected. More...
const TOss &	CUser_field_Base::C_Data::GetOss (void) const
	Get the variant data. More...
TOss &	CUser_field_Base::C_Data::SetOss (void)
	Select the variant. More...
bool	CUser_field_Base::C_Data::IsFields (void) const
	Check if variant Fields is selected. More...
const TFields &	CUser_field_Base::C_Data::GetFields (void) const
	Get the variant data. More...
TFields &	CUser_field_Base::C_Data::SetFields (void)
	Select the variant. More...
bool	CUser_field_Base::C_Data::IsObjects (void) const
	Check if variant Objects is selected. More...
const TObjects &	CUser_field_Base::C_Data::GetObjects (void) const
	Get the variant data. More...
TObjects &	CUser_field_Base::C_Data::SetObjects (void)
	Select the variant. More...
	CUser_field_Base::C_Data::C_Data (const C_Data &)
C_Data &	CUser_field_Base::C_Data::operator= (const C_Data &)
void	CUser_field_Base::C_Data::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
bool	CUser_field_Base::IsSetLabel (void) const
	field label Check if a value has been assigned to Label data member. More...
bool	CUser_field_Base::CanGetLabel (void) const
	Check if it is safe to call GetLabel method. More...
void	CUser_field_Base::ResetLabel (void)
	Reset Label data member. More...
const TLabel &	CUser_field_Base::GetLabel (void) const
	Get the Label member data. More...
void	CUser_field_Base::SetLabel (TLabel &value)
	Assign a value to Label data member. More...
TLabel &	CUser_field_Base::SetLabel (void)
	Assign a value to Label data member. More...
bool	CUser_field_Base::IsSetNum (void) const
	required for strs, ints, reals, oss Check if a value has been assigned to Num data member. More...
bool	CUser_field_Base::CanGetNum (void) const
	Check if it is safe to call GetNum method. More...
void	CUser_field_Base::ResetNum (void)
	Reset Num data member. More...
TNum	CUser_field_Base::GetNum (void) const
	Get the Num member data. More...
void	CUser_field_Base::SetNum (TNum value)
	Assign a value to Num data member. More...
TNum &	CUser_field_Base::SetNum (void)
	Assign a value to Num data member. More...
bool	CUser_field_Base::IsSetData (void) const
	Check if a value has been assigned to Data data member. More...
bool	CUser_field_Base::CanGetData (void) const
	Check if it is safe to call GetData method. More...
void	CUser_field_Base::ResetData (void)
	Reset Data data member. More...
const TData &	CUser_field_Base::GetData (void) const
	Get the Data member data. More...
void	CUser_field_Base::SetData (TData &value)
	Assign a value to Data data member. More...
TData &	CUser_field_Base::SetData (void)
	Assign a value to Data data member. More...
virtual void	CUser_field_Base::Reset (void)
	Reset the whole object. More...
	CUser_field_Base::CUser_field_Base (const CUser_field_Base &)
CUser_field_Base &	CUser_field_Base::operator= (const CUser_field_Base &)
	CUser_object_Base::CUser_object_Base (void)
virtual	CUser_object_Base::~CUser_object_Base (void)
	CUser_object_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CUser_object_Base::IsSetClass (void) const
	endeavor which designed this object Check if a value has been assigned to Class data member. More...
bool	CUser_object_Base::CanGetClass (void) const
	Check if it is safe to call GetClass method. More...
void	CUser_object_Base::ResetClass (void)
	Reset Class data member. More...
const TClass &	CUser_object_Base::GetClass (void) const
	Get the Class member data. More...
void	CUser_object_Base::SetClass (const TClass &value)
	Assign a value to Class data member. More...
void	CUser_object_Base::SetClass (TClass &&value)
TClass &	CUser_object_Base::SetClass (void)
	Assign a value to Class data member. More...
bool	CUser_object_Base::IsSetType (void) const
	type of object within class Check if a value has been assigned to Type data member. More...
bool	CUser_object_Base::CanGetType (void) const
	Check if it is safe to call GetType method. More...
void	CUser_object_Base::ResetType (void)
	Reset Type data member. More...
const TType &	CUser_object_Base::GetType (void) const
	Get the Type member data. More...
void	CUser_object_Base::SetType (TType &value)
	Assign a value to Type data member. More...
TType &	CUser_object_Base::SetType (void)
	Assign a value to Type data member. More...
bool	CUser_object_Base::IsSetData (void) const
	the object itself Check if a value has been assigned to Data data member. More...
bool	CUser_object_Base::CanGetData (void) const
	Check if it is safe to call GetData method. More...
void	CUser_object_Base::ResetData (void)
	Reset Data data member. More...
const TData &	CUser_object_Base::GetData (void) const
	Get the Data member data. More...
TData &	CUser_object_Base::SetData (void)
	Assign a value to Data data member. More...
virtual void	CUser_object_Base::Reset (void)
	Reset the whole object. More...
	CUser_object_Base::CUser_object_Base (const CUser_object_Base &)
CUser_object_Base &	CUser_object_Base::operator= (const CUser_object_Base &)

Variables
E_Choice	CDate_Base::m_choice
static const char *const	CDate_Base::sm_SelectionNames []
NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CDate_Base::m_string
NCBI_NS_NCBI::CSerialObject *   CDate_Base::m_object
union {
NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CDate_Base::m_string
NCBI_NS_NCBI::CSerialObject *   CDate_Base::m_object
};
Uint4	CDate_std_Base::m_set_State [1]
int	CDate_std_Base::m_Year
int	CDate_std_Base::m_Month
int	CDate_std_Base::m_Day
string	CDate_std_Base::m_Season
int	CDate_std_Base::m_Hour
int	CDate_std_Base::m_Minute
int	CDate_std_Base::m_Second
Uint4	CDbtag_Base::m_set_State [1]
string	CDbtag_Base::m_Db
CRef< TTag >	CDbtag_Base::m_Tag
Uint4	CInt_fuzz_Base::C_Range::m_set_State [1]
TSeqPos	CInt_fuzz_Base::C_Range::m_Max
TSeqPos	CInt_fuzz_Base::C_Range::m_Min
E_Choice	CInt_fuzz_Base::m_choice
static const char *const	CInt_fuzz_Base::sm_SelectionNames []
TP_m   CInt_fuzz_Base::m_P_m
TPct   CInt_fuzz_Base::m_Pct
TLim   CInt_fuzz_Base::m_Lim
NCBI_NS_NCBI::CUnionBuffer< TAlt >   CInt_fuzz_Base::m_Alt
NCBI_NS_NCBI::CSerialObject *   CInt_fuzz_Base::m_object
union {
TP_m   CInt_fuzz_Base::m_P_m
TPct   CInt_fuzz_Base::m_Pct
TLim   CInt_fuzz_Base::m_Lim
NCBI_NS_NCBI::CUnionBuffer< TAlt >   CInt_fuzz_Base::m_Alt
NCBI_NS_NCBI::CSerialObject *   CInt_fuzz_Base::m_object
};
Uint4	CName_std_Base::m_set_State [1]
string	CName_std_Base::m_Last
string	CName_std_Base::m_First
string	CName_std_Base::m_Middle
string	CName_std_Base::m_Full
string	CName_std_Base::m_Initials
string	CName_std_Base::m_Suffix
string	CName_std_Base::m_Title
E_Choice	CObject_id_Base::m_choice
static const char *const	CObject_id_Base::sm_SelectionNames []
TId   CObject_id_Base::m_Id
NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CObject_id_Base::m_string
void *   CObject_id_Base::m_dummy_pointer_for_alignment
union {
TId   CObject_id_Base::m_Id
NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CObject_id_Base::m_string
void *   CObject_id_Base::m_dummy_pointer_for_alignment
};
E_Choice	CPerson_id_Base::m_choice
static const char *const	CPerson_id_Base::sm_SelectionNames []
NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CPerson_id_Base::m_string
NCBI_NS_NCBI::CSerialObject *   CPerson_id_Base::m_object
union {
NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CPerson_id_Base::m_string
NCBI_NS_NCBI::CSerialObject *   CPerson_id_Base::m_object
};
E_Choice	CUser_field_Base::C_Data::m_choice
static const char *const	CUser_field_Base::C_Data::sm_SelectionNames []
TInt   CUser_field_Base::C_Data::m_Int
TReal   CUser_field_Base::C_Data::m_Real
TBool   CUser_field_Base::C_Data::m_Bool
NCBI_NS_NCBI::CUnionBuffer< TOs >   CUser_field_Base::C_Data::m_Os
NCBI_NS_NCBI::CUnionBuffer< TStrs >   CUser_field_Base::C_Data::m_Strs
NCBI_NS_NCBI::CUnionBuffer< TInts >   CUser_field_Base::C_Data::m_Ints
NCBI_NS_NCBI::CUnionBuffer< TReals >   CUser_field_Base::C_Data::m_Reals
NCBI_NS_NCBI::CUnionBuffer< TOss >   CUser_field_Base::C_Data::m_Oss
NCBI_NS_NCBI::CUnionBuffer< TFields >   CUser_field_Base::C_Data::m_Fields
NCBI_NS_NCBI::CUnionBuffer< TObjects >   CUser_field_Base::C_Data::m_Objects
NCBI_NS_NCBI::CUnionBuffer< CStringUTF8 >   CUser_field_Base::C_Data::m_string_utf8
NCBI_NS_NCBI::CSerialObject *   CUser_field_Base::C_Data::m_object
union {
TInt   CUser_field_Base::C_Data::m_Int
TReal   CUser_field_Base::C_Data::m_Real
TBool   CUser_field_Base::C_Data::m_Bool
NCBI_NS_NCBI::CUnionBuffer< TOs >   CUser_field_Base::C_Data::m_Os
NCBI_NS_NCBI::CUnionBuffer< TStrs >   CUser_field_Base::C_Data::m_Strs
NCBI_NS_NCBI::CUnionBuffer< TInts >   CUser_field_Base::C_Data::m_Ints
NCBI_NS_NCBI::CUnionBuffer< TReals >   CUser_field_Base::C_Data::m_Reals
NCBI_NS_NCBI::CUnionBuffer< TOss >   CUser_field_Base::C_Data::m_Oss
NCBI_NS_NCBI::CUnionBuffer< TFields >   CUser_field_Base::C_Data::m_Fields
NCBI_NS_NCBI::CUnionBuffer< TObjects >   CUser_field_Base::C_Data::m_Objects
NCBI_NS_NCBI::CUnionBuffer< CStringUTF8 >   CUser_field_Base::C_Data::m_string_utf8
NCBI_NS_NCBI::CSerialObject *   CUser_field_Base::C_Data::m_object
};
Uint4	CUser_field_Base::m_set_State [1]
CRef< TLabel >	CUser_field_Base::m_Label
int	CUser_field_Base::m_Num
CRef< TData >	CUser_field_Base::m_Data
Uint4	CUser_object_Base::m_set_State [1]
string	CUser_object_Base::m_Class
CRef< TType >	CUser_object_Base::m_Type
vector< CRef< CUser_field > >	CUser_object_Base::m_Data

Detailed Description

Typedef Documentation

TAlt

typedef list< TSeqPos > CInt_fuzz_Base::TAlt

Definition at line 289 of file Int_fuzz_.hpp.

TBool

typedef bool CUser_field_Base::C_Data::TBool

Definition at line 182 of file User_field_.hpp.

TClass

typedef string CUser_object_Base::TClass

Definition at line 95 of file User_object_.hpp.

TConsortium

typedef string CPerson_id_Base::TConsortium

Definition at line 158 of file Person_id_.hpp.

TData [1/2]

typedef C_Data CUser_field_Base::TData

Definition at line 506 of file User_field_.hpp.

TData [2/2]

typedef vector< CRef< CUser_field > > CUser_object_Base::TData

Definition at line 97 of file User_object_.hpp.

TDay

typedef int CDate_std_Base::TDay

Definition at line 88 of file Date_std_.hpp.

TDb

typedef string CDbtag_Base::TDb

Definition at line 92 of file Dbtag_.hpp.

TDbtag

typedef CDbtag CPerson_id_Base::TDbtag

Definition at line 154 of file Person_id_.hpp.

TFields

typedef vector< CRef< CUser_field > > CUser_field_Base::C_Data::TFields

Definition at line 189 of file User_field_.hpp.

TFirst

typedef string CName_std_Base::TFirst

Definition at line 87 of file Name_std_.hpp.

TFull

typedef string CName_std_Base::TFull

Definition at line 89 of file Name_std_.hpp.

THour

typedef int CDate_std_Base::THour

Definition at line 90 of file Date_std_.hpp.

TId

typedef int CObject_id_Base::TId

Definition at line 146 of file Object_id_.hpp.

TInitials

typedef string CName_std_Base::TInitials

Definition at line 90 of file Name_std_.hpp.

TInt

typedef int CUser_field_Base::C_Data::TInt

Definition at line 180 of file User_field_.hpp.

TInts

typedef vector< int > CUser_field_Base::C_Data::TInts

Definition at line 186 of file User_field_.hpp.

TLabel

typedef CObject_id CUser_field_Base::TLabel

Definition at line 504 of file User_field_.hpp.

TLast

typedef string CName_std_Base::TLast

Definition at line 86 of file Name_std_.hpp.

TLim

typedef ELim CInt_fuzz_Base::TLim

Definition at line 288 of file Int_fuzz_.hpp.

TMax

typedef TSeqPos CInt_fuzz_Base::C_Range::TMax

Definition at line 106 of file Int_fuzz_.hpp.

TmemberIndex [1/6]

typedef Tparent::CMemberIndex<E_memberIndex, 8> CDate_std_Base::TmemberIndex

Definition at line 105 of file Date_std_.hpp.

TmemberIndex [2/6]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CDbtag_Base::TmemberIndex

Definition at line 101 of file Dbtag_.hpp.

TmemberIndex [3/6]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CInt_fuzz_Base::C_Range::TmemberIndex

Definition at line 115 of file Int_fuzz_.hpp.

TmemberIndex [4/6]

typedef Tparent::CMemberIndex<E_memberIndex, 8> CName_std_Base::TmemberIndex

Definition at line 105 of file Name_std_.hpp.

TmemberIndex [5/6]

typedef Tparent::CMemberIndex<E_memberIndex, 4> CUser_field_Base::TmemberIndex

Definition at line 515 of file User_field_.hpp.

TmemberIndex [6/6]

typedef Tparent::CMemberIndex<E_memberIndex, 4> CUser_object_Base::TmemberIndex

Definition at line 106 of file User_object_.hpp.

TMiddle

typedef string CName_std_Base::TMiddle

Definition at line 88 of file Name_std_.hpp.

TMin

typedef TSeqPos CInt_fuzz_Base::C_Range::TMin

Definition at line 107 of file Int_fuzz_.hpp.

TMinute

typedef int CDate_std_Base::TMinute

Definition at line 91 of file Date_std_.hpp.

TMl

typedef string CPerson_id_Base::TMl

Definition at line 156 of file Person_id_.hpp.

TMonth

typedef int CDate_std_Base::TMonth

Definition at line 87 of file Date_std_.hpp.

TName

typedef CName_std CPerson_id_Base::TName

Definition at line 155 of file Person_id_.hpp.

TNum

typedef int CUser_field_Base::TNum

Definition at line 505 of file User_field_.hpp.

TObject

typedef CUser_object CUser_field_Base::C_Data::TObject

Definition at line 184 of file User_field_.hpp.

TObjects

typedef vector< CRef< CUser_object > > CUser_field_Base::C_Data::TObjects

Definition at line 190 of file User_field_.hpp.

TOs

typedef vector< char > CUser_field_Base::C_Data::TOs

Definition at line 183 of file User_field_.hpp.

TOss

typedef vector< vector< char >* > CUser_field_Base::C_Data::TOss

Definition at line 188 of file User_field_.hpp.

TP_m

typedef TSeqPos CInt_fuzz_Base::TP_m

Definition at line 285 of file Int_fuzz_.hpp.

Tparent [1/11]

typedef CSerialObject CDate_Base::Tparent

private

Definition at line 114 of file Date_.hpp.

Tparent [2/11]

typedef CSerialObject CDate_std_Base::Tparent

private

Definition at line 75 of file Date_std_.hpp.

Tparent [3/11]

typedef CSerialObject CDbtag_Base::Tparent

private

Definition at line 81 of file Dbtag_.hpp.

Tparent [4/11]

typedef CSerialObject CInt_fuzz_Base::Tparent

private

Definition at line 77 of file Int_fuzz_.hpp.

Tparent [5/11]

typedef CSerialObject CInt_fuzz_Base::C_Range::Tparent

private

Definition at line 95 of file Int_fuzz_.hpp.

Tparent [6/11]

typedef CSerialObject CName_std_Base::Tparent

private

Definition at line 75 of file Name_std_.hpp.

Tparent [7/11]

typedef CSerialObject CObject_id_Base::Tparent

private

Definition at line 76 of file Object_id_.hpp.

Tparent [8/11]

typedef CSerialObject CPerson_id_Base::Tparent

private

Definition at line 81 of file Person_id_.hpp.

Tparent [9/11]

typedef CSerialObject CUser_field_Base::Tparent

private

Definition at line 81 of file User_field_.hpp.

Tparent [10/11]

typedef CSerialObject CUser_field_Base::C_Data::Tparent

private

Definition at line 99 of file User_field_.hpp.

Tparent [11/11]

typedef CSerialObject CUser_object_Base::Tparent

private

Definition at line 84 of file User_object_.hpp.

TPct

typedef int CInt_fuzz_Base::TPct

Definition at line 287 of file Int_fuzz_.hpp.

TRange

typedef C_Range CInt_fuzz_Base::TRange

Definition at line 286 of file Int_fuzz_.hpp.

TReal

typedef double CUser_field_Base::C_Data::TReal

Definition at line 181 of file User_field_.hpp.

TReals

typedef vector< double > CUser_field_Base::C_Data::TReals

Definition at line 187 of file User_field_.hpp.

TSeason

typedef string CDate_std_Base::TSeason

Definition at line 89 of file Date_std_.hpp.

TSecond

typedef int CDate_std_Base::TSecond

Definition at line 92 of file Date_std_.hpp.

TStd

typedef CDate_std CDate_Base::TStd

Definition at line 185 of file Date_.hpp.

TStr [1/4]

typedef string CDate_Base::TStr

Definition at line 184 of file Date_.hpp.

TStr [2/4]

typedef string CObject_id_Base::TStr

Definition at line 147 of file Object_id_.hpp.

TStr [3/4]

typedef string CPerson_id_Base::TStr

Definition at line 157 of file Person_id_.hpp.

TStr [4/4]

typedef CStringUTF8 CUser_field_Base::C_Data::TStr

Definition at line 179 of file User_field_.hpp.

TStrs

typedef vector< CStringUTF8 > CUser_field_Base::C_Data::TStrs

Definition at line 185 of file User_field_.hpp.

TSuffix

typedef string CName_std_Base::TSuffix

Definition at line 91 of file Name_std_.hpp.

TTag

typedef CObject_id CDbtag_Base::TTag

Definition at line 93 of file Dbtag_.hpp.

TTitle

typedef string CName_std_Base::TTitle

Definition at line 92 of file Name_std_.hpp.

TType

typedef CObject_id CUser_object_Base::TType

Definition at line 96 of file User_object_.hpp.

TYear

typedef int CDate_std_Base::TYear

Definition at line 86 of file Date_std_.hpp.

Enumeration Type Documentation

E_Choice [1/5]

enum CDate_Base::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Str	for those unparsed dates
e_Std	use this if you can

Definition at line 126 of file Date_.hpp.

E_Choice [2/5]

enum CInt_fuzz_Base::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_P_m	plus or minus fixed amount
e_Range
e_Pct	% plus or minus (x10) 0-1000
e_Lim
e_Alt	set of alternatives for the integer

Definition at line 224 of file Int_fuzz_.hpp.

E_Choice [3/5]

enum CObject_id_Base::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Id
e_Str

Definition at line 88 of file Object_id_.hpp.

E_Choice [4/5]

enum CPerson_id_Base::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Dbtag	any defined database tag
e_Name	structured name
e_Ml	MEDLINE name (semi-structured) eg. "Jones RM".
e_Str	unstructured name
e_Consortium	consortium name

Definition at line 93 of file Person_id_.hpp.

E_Choice [5/5]

enum CUser_field_Base::C_Data::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Str
e_Int
e_Real
e_Bool
e_Os
e_Object	for using other definitions
e_Strs
e_Ints
e_Reals
e_Oss
e_Fields
e_Objects

Definition at line 111 of file User_field_.hpp.

E_ChoiceStopper [1/5]

enum CDate_Base::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Std+1

Definition at line 132 of file Date_.hpp.

E_ChoiceStopper [2/5]

enum CInt_fuzz_Base::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Alt+1

Definition at line 233 of file Int_fuzz_.hpp.

E_ChoiceStopper [3/5]

enum CObject_id_Base::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Str+1

Definition at line 94 of file Object_id_.hpp.

E_ChoiceStopper [4/5]

enum CPerson_id_Base::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Consortium+1

Definition at line 102 of file Person_id_.hpp.

E_ChoiceStopper [5/5]

enum CUser_field_Base::C_Data::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Objects+1

Definition at line 127 of file User_field_.hpp.

E_memberIndex [1/6]

enum CDate_std_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_year
e_month
e_day
e_season
e_hour
e_minute
e_second

Definition at line 95 of file Date_std_.hpp.

E_memberIndex [2/6]

enum CDbtag_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_db
e_tag

Definition at line 96 of file Dbtag_.hpp.

E_memberIndex [3/6]

enum CInt_fuzz_Base::C_Range::E_memberIndex

strong

Enumerator
e__allMandatory
e_max
e_min

Definition at line 110 of file Int_fuzz_.hpp.

E_memberIndex [4/6]

enum CName_std_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_last
e_first
e_middle
e_full
e_initials
e_suffix
e_title

Definition at line 95 of file Name_std_.hpp.

E_memberIndex [5/6]

enum CUser_field_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_label
e_num
e_data

Definition at line 509 of file User_field_.hpp.

E_memberIndex [6/6]

enum CUser_object_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_class
e_type
e_data

Definition at line 100 of file User_object_.hpp.

ELim

enum CInt_fuzz_Base::ELim

some limit value

Enumerator
eLim_unk	unknown
eLim_gt	greater than
eLim_lt	less than
eLim_tr	space to right of position
eLim_tl	space to left of position
eLim_circle	artificial break at origin of circle
eLim_other	something else

Definition at line 209 of file Int_fuzz_.hpp.

Function Documentation

C_Data() [1/2]

CUser_field_Base::C_Data::C_Data ( const C_Data &  )

private

C_Data() [2/2]

END_CHOICE_INFO CUser_field_Base::C_Data::C_Data

(

void

)

Definition at line 223 of file User_field_.cpp.

C_Range() [1/2]

CInt_fuzz_Base::C_Range::C_Range ( const C_Range &  )

private

C_Range() [2/2]

END_CLASS_INFO CInt_fuzz_Base::C_Range::C_Range

(

void

)

Definition at line 69 of file Int_fuzz_.cpp.

References CInt_fuzz_Base::C_Range::m_set_State.

CanGetClass()

bool CUser_object_Base::CanGetClass ( void  ) const

inline

Check if it is safe to call GetClass method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 252 of file User_object_.hpp.

References CUser_object_Base::IsSetClass().

Referenced by CUser_object_Base::GetClass(), CDiscrepancyObject::GetTextObjectDescription(), and GetTextObjectDescription().

CanGetData() [1/2]

bool CUser_field_Base::CanGetData ( void  ) const

inline

Check if it is safe to call GetData method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1018 of file User_field_.hpp.

Referenced by CSnpBitfieldFactory::CreateBitfield(), CSnpBitfield2::CSnpBitfield2(), CFlatModelEvQVal::Format(), CWndLayoutReg::GetDefaultLayout(), CGenomeAnnotComment::GetGenomeBuildNumber(), CWndLayoutReg::GetLayout(), CCommentItem::GetStringForBankIt(), CWriteUtil::GetStringForModelEvidence(), CCommentItem::GetStringForTPA(), CGuiObjectInfoVariation::GetToolTip(), s_CountAccessions(), s_FindModelEvidanceUop(), CBedWriter::WriteAnnot(), CSNPSearchJob::x_DoSearch(), CGenomeProjectItem::x_GatherInfo(), and CAlignmentSmear::x_GetAnnotName().

CanGetData() [2/2]

bool CUser_object_Base::CanGetData ( void  ) const

inline

Check if it is safe to call GetData method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 329 of file User_object_.hpp.

Referenced by CWriteDB_Impl::x_GetBioseqBinaryHeader(), CWriteDB_Impl::x_GetFastaReaderDeflines(), and CWiggleWriter::xWriteTrackLine().

CanGetDay()

bool CDate_std_Base::CanGetDay ( void  ) const

inline

Check if it is safe to call GetDay method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 507 of file Date_std_.hpp.

References CDate_std_Base::IsSetDay().

Referenced by CDate_std::AsCTime(), CDate_std::Compare(), CDate_std::GetDate(), and CDate_std_Base::GetDay().

CanGetDb()

bool CDbtag_Base::CanGetDb ( void  ) const

inline

Check if it is safe to call GetDb method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 214 of file Dbtag_.hpp.

References CDbtag_Base::IsSetDb().

Referenced by ExtractGnomonModelNum(), CDbtag_Base::GetDb(), CDbtag::GetDBFlags(), CVDBBlastUtil::GetOIDFromVDBSeqId(), CDbtag::GetType(), CDbtag::IsApproved(), CDbtag::IsApprovedNoCase(), IsStringId(), Normalize(), s_GetSRASeqMetadata(), SeqDB_SimplifySeqid(), CSeqDBImpl::SeqidToOids(), CCommentItem::x_GatherDescInfo(), and CReferenceItem::x_Init().

CanGetFirst()

bool CName_std_Base::CanGetFirst ( void  ) const

inline

Check if it is safe to call GetFirst method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 463 of file Name_std_.hpp.

References CName_std_Base::IsSetFirst().

Referenced by CName_std_Base::GetFirst().

CanGetFull()

bool CName_std_Base::CanGetFull ( void  ) const

inline

Check if it is safe to call GetFull method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 557 of file Name_std_.hpp.

References CName_std_Base::IsSetFull().

Referenced by CName_std_Base::GetFull().

CanGetHour()

bool CDate_std_Base::CanGetHour ( void  ) const

inline

Check if it is safe to call GetHour method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 601 of file Date_std_.hpp.

References CDate_std_Base::IsSetHour().

Referenced by CDate_std::AsCTime(), CDate_std::Compare(), CDate_std::GetDate(), and CDate_std_Base::GetHour().

CanGetInitials()

bool CName_std_Base::CanGetInitials ( void  ) const

inline

Check if it is safe to call GetInitials method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 604 of file Name_std_.hpp.

References CName_std_Base::IsSetInitials().

Referenced by CName_std_Base::GetInitials(), and CAuthor::GetLabelV2().

CanGetLabel()

bool CUser_field_Base::CanGetLabel ( void  ) const

inline

Check if it is safe to call GetLabel method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 941 of file User_field_.hpp.

Referenced by CModifyStructuredComment::ApplyToUserObject(), CStructCommentSubpanel::GetLabelsFromSeq(), s_GetAssemblyInfo(), and CAlignmentSmear::x_GetAnnotName().

CanGetLast()

bool CName_std_Base::CanGetLast ( void  ) const

inline

Check if it is safe to call GetLast method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 416 of file Name_std_.hpp.

References CName_std_Base::IsSetLast().

Referenced by CName_std_Base::GetLast().

CanGetMax()

bool CInt_fuzz_Base::C_Range::CanGetMax ( void  ) const

inline

Check if it is safe to call GetMax method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 459 of file Int_fuzz_.hpp.

CanGetMiddle()

bool CName_std_Base::CanGetMiddle ( void  ) const

inline

Check if it is safe to call GetMiddle method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 510 of file Name_std_.hpp.

References CName_std_Base::IsSetMiddle().

Referenced by CName_std_Base::GetMiddle().

CanGetMin()

bool CInt_fuzz_Base::C_Range::CanGetMin ( void  ) const

inline

Check if it is safe to call GetMin method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 506 of file Int_fuzz_.hpp.

CanGetMinute()

bool CDate_std_Base::CanGetMinute ( void  ) const

inline

Check if it is safe to call GetMinute method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 648 of file Date_std_.hpp.

References CDate_std_Base::IsSetMinute().

Referenced by CDate_std::AsCTime(), CDate_std::Compare(), CDate_std::GetDate(), and CDate_std_Base::GetMinute().

CanGetMonth()

bool CDate_std_Base::CanGetMonth ( void  ) const

inline

Check if it is safe to call GetMonth method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 460 of file Date_std_.hpp.

References CDate_std_Base::IsSetMonth().

Referenced by CDate_std::AsCTime(), CDate_std::Compare(), CDate_std::GetDate(), and CDate_std_Base::GetMonth().

CanGetNum()

bool CUser_field_Base::CanGetNum ( void  ) const

inline

Check if it is safe to call GetNum method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 971 of file User_field_.hpp.

References CUser_field_Base::IsSetNum().

Referenced by CollectUserField(), and CUser_field_Base::GetNum().

CanGetSeason()

bool CDate_std_Base::CanGetSeason ( void  ) const

inline

Check if it is safe to call GetSeason method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 554 of file Date_std_.hpp.

References CDate_std_Base::IsSetSeason().

Referenced by CDate_std::Compare(), CDate_std::GetDate(), and CDate_std_Base::GetSeason().

CanGetSecond()

bool CDate_std_Base::CanGetSecond ( void  ) const

inline

Check if it is safe to call GetSecond method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 695 of file Date_std_.hpp.

References CDate_std_Base::IsSetSecond().

Referenced by CDate_std::AsCTime(), CDate_std::Compare(), CDate_std::GetDate(), and CDate_std_Base::GetSecond().

CanGetSuffix()

bool CName_std_Base::CanGetSuffix ( void  ) const

inline

Check if it is safe to call GetSuffix method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 651 of file Name_std_.hpp.

References CName_std_Base::IsSetSuffix().

Referenced by CAuthor::GetLabelV2(), and CName_std_Base::GetSuffix().

CanGetTag()

bool CDbtag_Base::CanGetTag ( void  ) const

inline

Check if it is safe to call GetTag method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 261 of file Dbtag_.hpp.

Referenced by CVDBBlastUtil::GetOIDFromVDBSeqId(), s_GetSRASeqMetadata(), SeqDB_SimplifySeqid(), CWriteDB_IsamIndex::x_AddStringIds(), CCommentItem::x_GatherDescInfo(), and CVcfWriter::x_WriteFeatureInfo().

CanGetTitle()

bool CName_std_Base::CanGetTitle ( void  ) const

inline

Check if it is safe to call GetTitle method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 698 of file Name_std_.hpp.

References CName_std_Base::IsSetTitle().

Referenced by CName_std_Base::GetTitle().

CanGetType()

bool CUser_object_Base::CanGetType ( void  ) const

inline

Check if it is safe to call GetType method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 299 of file User_object_.hpp.

Referenced by GetSegSetDblink(), CCommentItem::GetStringForBankIt(), CCommentItem::GetStringForTPA(), CPhyTreeView::OnSomethingEdited(), CChangePhyloSelectionSetCmd::PerformEdit(), s_HasTpaUserObject(), s_IsModelEvidanceUop(), CValidError_desc::ValidateUser(), CPrimaryItem::x_GatherInfo(), CAlignmentSmear::x_GetAnnotName(), CWriteDB_Impl::x_GetFastaReaderDeflines(), CCommonComponentScorer::x_GetUserCompList(), and CWiggleWriter::xWriteTrackLine().

CanGetYear()

bool CDate_std_Base::CanGetYear ( void  ) const

inline

Check if it is safe to call GetYear method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 413 of file Date_std_.hpp.

References CDate_std_Base::IsSetYear().

Referenced by CDate_std_Base::GetYear().

CDate_Base() [1/2]

CDate_Base::CDate_Base ( const CDate_Base &  )

private

CDate_Base() [2/2]

END_CHOICE_INFO CDate_Base::CDate_Base

(

void

)

Definition at line 145 of file Date_.cpp.

CDate_std_Base() [1/2]

CDate_std_Base::CDate_std_Base ( const CDate_std_Base &  )

private

CDate_std_Base() [2/2]

END_CLASS_INFO CDate_std_Base::CDate_std_Base

(

void

)

Definition at line 84 of file Date_std_.cpp.

References CDate_std_Base::m_set_State.

CDbtag_Base() [1/2]

CDbtag_Base::CDbtag_Base ( const CDbtag_Base &  )

private

CDbtag_Base() [2/2]

END_CLASS_INFO CDbtag_Base::CDbtag_Base

(

void

)

Definition at line 89 of file Dbtag_.cpp.

References CObject::IsAllocatedInPool(), CDbtag_Base::m_set_State, and CDbtag_Base::ResetTag().

CheckSelected() [1/5]

void CDate_Base::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 277 of file Date_.hpp.

References CDate_Base::m_choice, and CDate_Base::ThrowInvalidSelection().

Referenced by CDate_Base::GetStd(), and CDate_Base::GetStr().

CheckSelected() [2/5]

void CInt_fuzz_Base::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 553 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::m_choice, and CInt_fuzz_Base::ThrowInvalidSelection().

Referenced by CInt_fuzz_Base::GetAlt(), CInt_fuzz_Base::GetLim(), CInt_fuzz_Base::GetP_m(), CInt_fuzz_Base::GetPct(), and CInt_fuzz_Base::GetRange().

CheckSelected() [3/5]

void CObject_id_Base::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 241 of file Object_id_.hpp.

References CObject_id_Base::m_choice, and CObject_id_Base::ThrowInvalidSelection().

Referenced by CObject_id_Base::GetId(), and CObject_id_Base::GetStr().

CheckSelected() [4/5]

void CPerson_id_Base::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 330 of file Person_id_.hpp.

References CPerson_id_Base::m_choice, and CPerson_id_Base::ThrowInvalidSelection().

Referenced by CPerson_id_Base::GetConsortium(), CPerson_id_Base::GetDbtag(), CPerson_id_Base::GetMl(), CPerson_id_Base::GetName(), and CPerson_id_Base::GetStr().

CheckSelected() [5/5]

void CUser_field_Base::C_Data::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 665 of file User_field_.hpp.

CInt_fuzz_Base() [1/2]

CInt_fuzz_Base::CInt_fuzz_Base ( const CInt_fuzz_Base &  )

private

CInt_fuzz_Base() [2/2]

END_CHOICE_INFO CInt_fuzz_Base::CInt_fuzz_Base

(

void

)

Definition at line 198 of file Int_fuzz_.cpp.

CName_std_Base() [1/2]

CName_std_Base::CName_std_Base ( const CName_std_Base &  )

private

CName_std_Base() [2/2]

END_CLASS_INFO CName_std_Base::CName_std_Base

(

void

)

Definition at line 120 of file Name_std_.cpp.

References CName_std_Base::m_set_State.

CObject_id_Base() [1/2]

CObject_id_Base::CObject_id_Base ( const CObject_id_Base &  )

private

CObject_id_Base() [2/2]

END_CHOICE_INFO CObject_id_Base::CObject_id_Base

(

void

)

Definition at line 119 of file Object_id_.cpp.

CPerson_id_Base() [1/2]

CPerson_id_Base::CPerson_id_Base ( const CPerson_id_Base &  )

private

CPerson_id_Base() [2/2]

END_CHOICE_INFO CPerson_id_Base::CPerson_id_Base

(

void

)

Definition at line 194 of file Person_id_.cpp.

CUser_field_Base() [1/2]

CUser_field_Base::CUser_field_Base ( const CUser_field_Base &  )

private

CUser_field_Base() [2/2]

END_CLASS_INFO CUser_field_Base::CUser_field_Base

(

void

)

Definition at line 283 of file User_field_.cpp.

References CObject::IsAllocatedInPool(), CUser_field_Base::m_set_State, CUser_field_Base::ResetData(), and CUser_field_Base::ResetLabel().

CUser_object_Base() [1/2]

CUser_object_Base::CUser_object_Base ( const CUser_object_Base &  )

private

CUser_object_Base() [2/2]

END_CLASS_INFO CUser_object_Base::CUser_object_Base

(

void

)

Definition at line 98 of file User_object_.cpp.

References CObject::IsAllocatedInPool(), CUser_object_Base::m_set_State, and CUser_object_Base::ResetType().

DECLARE_INTERNAL_TYPE_INFO() [1/11]

CDate_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [2/11]

CDate_std_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [3/11]

CDbtag_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [4/11]

CInt_fuzz_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [5/11]

CInt_fuzz_Base::C_Range::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [6/11]

CName_std_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [7/11]

CObject_id_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [8/11]

CPerson_id_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [9/11]

CUser_field_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [10/11]

CUser_field_Base::C_Data::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [11/11]

CUser_object_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DoSelect() [1/5]

void CDate_Base::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 72 of file Date_.cpp.

References CObject::AddReference(), CDate_Base::e_Std, CDate_Base::e_Str, CDate_Base::m_choice, CDate_Base::m_object, and CDate_Base::m_string.

DoSelect() [2/5]

void CInt_fuzz_Base::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 116 of file Int_fuzz_.cpp.

References CObject::AddReference(), CInt_fuzz_Base::e_Alt, CInt_fuzz_Base::e_Lim, CInt_fuzz_Base::e_P_m, CInt_fuzz_Base::e_Pct, CInt_fuzz_Base::e_Range, CInt_fuzz_Base::m_Alt, CInt_fuzz_Base::m_choice, CInt_fuzz_Base::m_Lim, CInt_fuzz_Base::m_object, CInt_fuzz_Base::m_P_m, and CInt_fuzz_Base::m_Pct.

DoSelect() [3/5]

void CObject_id_Base::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 68 of file Object_id_.cpp.

References CObject_id_Base::e_Id, CObject_id_Base::e_Str, CObject_id_Base::m_choice, CObject_id_Base::m_Id, and CObject_id_Base::m_string.

DoSelect() [4/5]

void CPerson_id_Base::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 76 of file Person_id_.cpp.

References CObject::AddReference(), CPerson_id_Base::e_Consortium, CPerson_id_Base::e_Dbtag, CPerson_id_Base::e_Ml, CPerson_id_Base::e_Name, CPerson_id_Base::e_Str, CPerson_id_Base::m_choice, CPerson_id_Base::m_object, and CPerson_id_Base::m_string.

DoSelect() [5/5]

void CUser_field_Base::C_Data::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 99 of file User_field_.cpp.

References CObject::AddReference().

ELim()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CInt_fuzz_Base::ELim ( void  )

static

Access to ELim's attributes (values, names) as defined in spec.

GetAlt()

const CInt_fuzz_Base::TAlt & CInt_fuzz_Base::GetAlt ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 669 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::CheckSelected(), CInt_fuzz_Base::e_Alt, and CInt_fuzz_Base::m_Alt.

Referenced by CInt_fuzz::AssignTranslated(), CRangeWithFuzz::x_AddFuzz(), x_Assign(), and CMappingRange::x_Map_Fuzz().

GetBool()

CUser_field_Base::C_Data::TBool CUser_field_Base::C_Data::GetBool ( void  ) const

inline

Get the variant data.

Returns

Copy of the variant data.

Definition at line 768 of file User_field_.hpp.

Referenced by CLBLASTObjectLoader::AddDataLoader(), CDockLayoutTree::CNode::FromUserObject(), CComplexRelation::FromUserObject(), CBLASTParams::FromUserObject(), CSettingsSet::GetBool(), CUser_field::GetBool(), CUserFeatHandler::GetLabel(), CLBLASTObjectLoader::GetLoaderName(), CUser_object::GetRefGeneTrackingGenerated(), CPhyloSelectionSet::InitFromUserObject(), CPhyTreeView::InitView(), CTableDelimiterRules::LoadAsn(), CTableImportColumn::LoadAsn(), CDemoSeqQaApp::Run(), s_IsMatchById(), s_ScanRecursive(), sWindowPosFromUserObject(), CClonePlacementGlyph::x_Draw(), CBLASTParams::x_FromUserObject(), CAlignmentSmear::x_GetAnnotName(), and CClonePlacementGlyph::x_GetCloneEnds().

GetClass()

const CUser_object_Base::TClass & CUser_object_Base::GetClass ( void  ) const

inline

Get the Class member data.

Returns

Reference to the member data.

Definition at line 258 of file User_object_.hpp.

References CUser_object_Base::CanGetClass(), CUser_object_Base::m_Class, and CSerialObject::ThrowUnassigned().

Referenced by CRemoveDuplicateStructuredComment::ApplyToUserObject(), CUser_object::GetCategory(), CValidErrorFormat::GetDescriptorContent(), CUserFeatHandler::GetLabel(), CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), CBankITCommentField::GetVals(), RestoreModelAttributes(), and s_GetContentLabel().

GetConsortium()

const CPerson_id_Base::TConsortium & CPerson_id_Base::GetConsortium ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 411 of file Person_id_.hpp.

References CPerson_id_Base::CheckSelected(), CPerson_id_Base::e_Consortium, and CPerson_id_Base::m_string.

Referenced by fix_pub::ExtractConsortiums(), CPubField::GetAuthorField(), GetAuthorString(), CPerson_id::GetLabel(), CAuthor::GetLabelV2(), CEditingActionDescAuthorConsortium::GetValue(), HasAuthor(), CValidError_imp::HasName(), CAuthorNamesPanel::IsAuthorEmpty(), SAuthorEmpty::operator()(), fix_pub::PrintPub(), CFindASN1Dlg::ReplaceInAuthor(), s_GetAuthorMatchString(), CPubField::SetAuthorField(), CReferenceItem::x_AddAuthors(), and CSrcWriter::xGather().

GetData() [1/2]

const CUser_field_Base::TData & CUser_field_Base::GetData ( void  ) const

inline

Get the Data member data.

Returns

Reference to the member data.

Definition at line 1024 of file User_field_.hpp.

References CUser_field_Base::m_Data, and CUser_field_Base::ResetData().

Referenced by CLBLASTObjectLoader::AddDataLoader(), CTableAnnotDataSource::AddSeqLoc(), CTableAnnotDataSource::AddSnpSeqLoc(), CRemoveEmptyGenomeProjectsDB::ApplyToUserObject(), CRemoveDuplicateStructuredComment::ApplyToUserObject(), CGvfWriteRecord::AssignSource(), CGvfWriteRecord::AssignType(), BOOST_AUTO_TEST_CASE(), BOOST_AUTO_TEST_SUITE_END(), CComment_rule::CheckFieldValue(), CComment_rule::CheckGeneralField(), CLDBlockGlyph::CLDBlockGlyph(), ClearGoTermValue(), CollectUserField(), CSnpBitfieldFactory::CreateBitfield(), CTableAnnotDataSource::CreateFeature(), CTableAnnotDataSource::CreateSnpFeature(), CTableAnnotDataSource::CreateSnps(), CSnpBitfield2::CSnpBitfield2(), CUser_field::DeleteField(), CSequenceEditingEventHandler::DeleteSpecificStructuredComment(), CGBDocument::DetachDataLoader(), CTableAnnotDataSource::FindLocations(), CFlatModelEvQVal::Format(), CFlatGoQVal::Format(), CRegistryFile::FromConfigFile(), CDockContainerDescr::FromUserObject(), CDockLayoutTree::CNode::FromUserObject(), CComplexRelation::FromUserObject(), CBLASTParams::FromUserObject(), CNewCleanup_imp::GeneFeatBC(), CSeqUtils::GetAnnotShown(), CSettingsSet::GetBool(), CUser_field::GetBool(), CUser_object::GetCategory(), CConstSageData::GetCount(), GetDBLinkIDs(), CWndLayoutReg::GetDefaultLayout(), CUser_field::GetDouble(), CUser_object::GetExperimentType(), CSGUtils::GetFeatFetchDepth(), CBioseq_Info::GetFeatureFetchPolicy(), CUser_field::GetFieldRef(), CUser_field::GetFieldsMap(), GetFieldValueAsString(), CGenomeAnnotComment::GetGenomeBuildNumber(), GetHasFrameShift(), GetHasOrderAssignment(), GetIdField(), CSettingsSet::GetInt(), CUser_field::GetInt(), CUser_field::GetInt8(), CSettingsSet::GetIntVec(), CClonePlacementGlyph::GetLabel(), CUserFeatHandler::GetLabel(), CWndLayoutReg::GetLayout(), NSnp::GetLength(), CLBLASTObjectLoader::GetLoaderName(), CAnnotObject_Info::GetLocsTypes(), GetLowTrace(), CGC_Replicon::GetMoleculeLabel(), CGC_Replicon::GetMoleculeLocation(), CGC_Replicon::GetMoleculeType(), CSeq_annot_SplitInfo::GetName(), GetPrefixOrSuffixType(), CProductStringBuilder::GetProductString(), CFlatGoQVal::GetPubmedId(), CSettingsSet::GetReal(), CSettingsSet::GetRealVec(), CUser_object::GetRefGeneTrackingAssembly(), CUser_object::GetRefGeneTrackingGenerated(), CUser_object::GetRefGeneTrackingIdenticalTo(), CUser_object::GetRefGeneTrackingStatus(), CCommentItem::GetRefTrackStatus(), CBlastQuerySourceBioseqSet::GetSegmentInfo(), CSGSeqGraphJob::GetSeqtableAnnots(), CSettingsSet::GetString(), CUser_field::GetString(), CCommentItem::GetStringForBankIt(), CWriteUtil::GetStringForModelEvidence(), CCommentItem::GetStringForRefSeqGenome(), CCommentItem::GetStringForRefTrack(), CCommentItem::GetStringForTLS(), CCommentItem::GetStringForTPA(), CCommentItem::GetStringForTSA(), CCommentItem::GetStringForWGS(), CSettingsSet::GetStringVec(), CConstSageData::GetTag(), CFlatGoQVal::GetTextString(), CSequenceTrack::GetTooltip(), CGuiObjectInfoSeq_align::GetToolTip(), CGuiObjectInfoPrimer::GetToolTip(), CGuiObjectInfoVariant::GetToolTip(), CGuiObjectInfoVariation::GetToolTip(), CReadUtil::GetTrackValue(), CWriteUtil::GetUserObjectByType(), CBankITCommentField::GetVals(), CLocalIDField::GetVals(), CEditingActionDescGenomeProjectId::GetValue(), CEditingActionDescStructCommDbName::GetValue(), CGBProjectHandle::GetViewSettings(), CTableImportDataSource::ImportTableParms(), CSeqTableReader::Init(), CPhyloSelectionSetMgr::InitFromUserObject(), CPhyloSelectionSet::InitFromUserObject(), CTreeLabel::InitializeFromUserObject(), CPhyTreeView::InitView(), CDiscrepancyContext::IsBGPipe(), CIntronGlyph::IsConsensus(), CLocalIDField::IsEmpty(), CVariationNormalization::isFullyShifted(), IsMatchingIdMissing(), CComment_rule::IsValid(), CTableDelimiterRules::LoadAsn(), CTableImportColumn::LoadAsn(), CTestApplication::LoadTable(), CUser_object::CRefGeneTrackingAccession::MakeAccessionFromUserField(), MakeCompartments(), CEditingActionDescUserObject::Modify(), CEditingActionDescLocalId::Modify(), CEditingActionDescComment::Modify(), CPhyTreeView::OnBioTreeChanged(), CPhyTreeView::OnSomethingEdited(), SSNP_Info::ParseSeq_feat(), CTabularFormatter_AssemblyInfo::Print(), CDUpdater::reformatBioseq(), CRelation::RelationFromUserObject(), CRegistryReadView::ResolveField(), RestoreModelAttributes(), RestoreModelMethod(), CDemoSeqQaApp::Run(), s_AddNewDBlinkValue(), s_AddNewUserField(), CCleanup::s_AddNumToUserField(), s_CheckTraceMateAlign(), CCleanup::s_CleanupGeneOntology(), CCleanup::s_CleanupGenomeAssembly(), CCleanup::s_CleanupStructuredComment(), s_CountAccessions(), s_ExtractKeys(), s_FastaGetOriginalID(), s_FieldHasNonBlankValue(), s_FindModelEvidanceUop(), s_GatherExistingValues(), s_GetAssemblyInfo(), s_GetBoxStyle(), s_GetDBTree(), s_GetEncodeValues(), s_GetGOText(), s_GetModelEvidance(), s_GetMrnaProteinLink(), s_GetOriginalID(), s_GetSegmentFlags(), s_GetSpliceSite(), s_GetUserObjectContent(), s_HasRefSeqPGAPStructuredComment(), s_IsGnomonModel(), s_IsMatchById(), s_PassesFilter(), CMacroFunction_RemoveQual::s_RemoveFields(), s_Render_Feat_Evidence(), s_ScanRecursive(), s_SeqDescCompare(), s_SetDBLinkFieldVals(), s_UnpackUserField(), CTreeLabel::SaveToUserObject(), CUser_field::SetFieldRef(), CRegistryFile::SetFieldToValue(), CRegistryWriteView::SetFieldToValue(), SetGoTermValue(), CDBLinkField::SetVal(), CStructuredCommentField::SetVal(), CEditingActionDescUserObject::SetValue(), sGetMethodFromModelEvidence(), sWindowPosFromUserObject(), CMacroFunction_AddDBLink::TheFunction(), CMacroFunction_ParseToStructComm::TheFunction(), CRefGeneTrackLocListPanel::TransferDataFromWindow(), CValidError_desc::ValidateDblink(), CBedWriter::WriteAnnot(), CCSraAlignIterator::x_AddField(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddGoQuals(), CFeatureItem::x_AddQualsExt(), CGuiObjectInfoSeq_align::x_AddUserObject(), x_AlmostEquals(), CGvfWriteRecord::x_AssignAttributeID(), CGvfWriteRecord::x_AssignAttributeParent(), CGvfWriteRecord::x_AssignAttributeVarType(), CBioseqContext::x_CheckForShowComments(), CCleanup::x_CleanupUserField(), CSplitDblinkQuals::x_ConvertStrsToStrs(), CSNPSearchJob::x_DoSearch(), CClonePlacementGlyph::x_Draw(), CTracebackSearchTestFixture::x_FindUsedGis(), CBLASTParams::x_FromUserObject(), CGenomeProjectItem::x_GatherInfo(), CAlignmentSmear::x_GetAnnotName(), CBamUIDataSource::x_GetBamInputs(), CDensegGraphicDataSource::x_GetCigarStr(), CClonePlacementGlyph::x_GetCloneEnds(), CBamUIDataSource::x_GetCSraInputs(), CRegistryReadView::x_GetKeys(), CDensegGraphicDataSource::x_GetMismatchStr(), CUser_object::x_GetRefGeneTrackingField(), CModifySeqId::x_GetRemoveOriginalIdCommand(), CMacroFunction_ParsedText::x_GetSpecialField(), CBamUIDataSource::x_GetSraAccession(), CBamUIDataSource::x_GetSrzAccession(), x_GetTentativeName(), CCommonComponentScorer::x_GetUserCompList(), CFeatureItem::x_HasMethodtRNAscanSE(), CValidError_bioseq::x_HasPGAPStructuredComment(), x_HasTentativeName(), CBioseqIndex::x_InitDescs(), CMiscSeqTable::x_InterpretColumnProperties(), CUser_object::x_IsUnreviewedType(), CUser_object::x_IsUnverifiedType(), CLDBlockJob::x_LoadFtable(), CNetBLASTUIDataSource::x_LoadJobDescriptors(), CBamRefSeqInfo::x_LoadRangesCov(), CGraphTrack::x_LoadSettings(), CAutoDefOptions::x_MakeModifierList(), CSGAnnotJob::x_PercentileButNotMax(), CAlignFilter::x_Query_Op(), CBioseqContext::x_SetAuthorizedAccess(), CBioseqContext::x_SetDataFromUserObjects(), CBioseqContext::x_SetFiletrackURL(), CDeflineGenerator::x_SetFlags(), CAutoDefOptions::x_SetModifierList(), CAutoDefOptions::x_SetSuppressedFeatures(), CSeq_annot_Info::x_UpdateName(), CVcfWriter::x_WriteFeatureFilter(), CVcfWriter::x_WriteFeatureGenotypeData(), CVcfWriter::x_WriteFeatureInfo(), CVcfWriter::x_WriteFeatureQual(), CVcfWriter::x_WriteInit(), CVcfWriter::x_WriteMeta(), CGff2Writer::xAssignFeatureAttributesGoMarkup(), CGtfWriter::xAssignFeatureMethod(), CSrcWriter::xGetOriginalId(), and CWiggleWriter::xWriteTrackLine().

GetData() [2/2]

const CUser_object_Base::TData & CUser_object_Base::GetData ( void  ) const

inline

Get the Data member data.

Returns

Reference to the member data.

Definition at line 335 of file User_object_.hpp.

References CUser_object_Base::m_Data.

Referenced by CTableAnnotDataSource::AddSeqLoc(), CTableAnnotDataSource::AddSnpSeqLoc(), AddUserObjectFieldItems(), CRemoveEmptyGenomeProjectsDB::ApplyToUserObject(), CRemoveDuplicateStructuredComment::ApplyToUserObject(), CRemoveEmptyStructuredComment::ApplyToUserObject(), CModifyStructuredComment::ApplyToUserObject(), CBedFeatureRecord::AssignDisplayData(), BOOST_AUTO_TEST_CASE(), CheckAutoDefOptions(), CComment_rule::CheckGeneralStructuredComment(), CheckLocalId(), CDBLinkField::ClearVal(), CGenomeProjectField::ClearVal(), CStructCommFieldValuePair::ClearVal(), CStructCommDBName::ClearVal(), CStructCommFieldName::ClearVal(), CStructuredCommentField::ClearVal(), CountGoTerms(), CTableAnnotDataSource::CreateFeature(), CTableAnnotDataSource::CreateSnpFeature(), CTableAnnotDataSource::CreateSnps(), CSubmissionWizard::ExportTemplate(), CTableAnnotDataSource::FindLocations(), CFlatModelEvQVal::Format(), fta_build_structured_comment(), fta_dblink_has_sra(), fta_tsa_tls_comment_dblink_check(), CDUpdater::GetBlastDefline(), CUser_object::GetCategory(), CField_type::GetDBLinkFieldFromUserObject(), CEditObjectSeq_desc::GetDescriptorType(), CUser_object::GetExperiment(), CUser_object::GetExperimentType(), CSGUtils::GetFeatFetchDepth(), CBioseq_Info::GetFeatureFetchPolicy(), CUser_object::GetFieldRef(), CGenericStructuredCommentColumn::GetFromComment(), GetGoTermErrors(), CStructCommentSubpanel::GetLabelsFromSeq(), CAnnotObject_Info::GetLocsTypes(), CTableDataValidateParams::GetNamedBoolField(), CProductStringBuilder::GetProductString(), GetProjectID(), CProjectItemExtra::GetStr(), CWriteUtil::GetStringForModelEvidence(), CCommentItem::GetStringForTPA(), CStructCommentFieldPanel::GetStructCommentFields(), GetStructuredCommentFields(), CComment_rule::GetStructuredCommentPrefix(), CGuiObjectInfoSeq_align::GetToolTip(), CReadUtil::GetTrackValue(), CWriteUtil::GetUserObjectByType(), CGenomeProjectField::GetVal(), CDBLinkField::GetVals(), CBankITCommentField::GetVals(), CLocalIDField::GetVals(), CStructCommFieldValuePair::GetVals(), CStructCommFieldName::GetVals(), CStructuredCommentField::GetVals(), HasBadGenomeAssemblyName(), HasBoolField(), HasIntField(), HasRepairedIDs(), HasStringField(), CAutoDefOptions::InitFromUserObject(), CTextView::InitView(), IsAppropriateRule(), CDBLinkField::IsEmpty(), CGenomeProjectField::IsEmpty(), CLocalIDField::IsEmpty(), CStructCommFieldValuePair::IsEmpty(), CStructuredCommentField::IsEmpty(), CComment_rule::IsValid(), CTestApplication::LoadTable(), CDBLink::MergeDBLink(), CEditingActionDescUserObject::Modify(), CEditingActionDescStructCommFieldName::Modify(), CStructuredCommentPanel::OnExport(), SSNP_Info::ParseSeq_feat(), PrintSAM(), PrintTabular(), CEditingActionDescGenomeProjectId::ResetValue(), CEditingActionDescStructCommDbName::ResetValue(), RestoreModelAttributes(), s_ExtractBlastDefline(), s_FindModelEvidanceUop(), s_GetFieldAt(), s_GetMrnaProteinLink(), s_GetOriginalId(), s_GetUserObjectContent(), s_GetUserObjectType(), s_IdXrefsNotReciprocal(), s_IsGnomonModel(), s_IsGoodDescr(), CMacroFunction_RemoveQual::s_RemoveFields(), s_Render_Feat_Evidence(), s_ScanRecursive(), SeqTableFromAssemblyFields(), CProjectItemExtra::SetStr(), CValidErrorFormat::SetSuppressionRules(), CValidError_imp::Setup(), CDBLinkField::SetVal(), CStructuredCommentField::SetVal(), CMacroFunction_AddDBLink::TheFunction(), UnpackUserObject(), CValidError_desc::ValidateDblink(), CValidError_bioseq::ValidateSeqDescContext(), CValidError_desc::ValidateUser(), CValidError_bioseq::ValidateWGSMaster(), CGvfWriter::WriteHeader(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddGoQuals(), CFeatureItem::x_AddQualsExt(), x_AlmostEquals(), CGvfWriteRecord::x_AssignAttributesCustom(), CBioseqContext::x_CheckForShowComments(), CTracebackSearchTestFixture::x_FindUsedGis(), CCommentItem::x_GatherDescInfo(), CGenomeProjectItem::x_GatherInfo(), CGenbankGatherer::x_GatherTLS(), CGenbankGatherer::x_GatherTSA(), CCommentItem::x_GatherUserObjInfo(), CGenbankGatherer::x_GatherWGS(), CAlignmentSmear::x_GetAnnotName(), CWriteDB_Impl::x_GetBioseqBinaryHeader(), CWriteDB_Impl::x_GetFastaReaderDeflines(), CAutoDef::x_GetHumanSTRFeatureClauses(), CAutoDef::x_GetHumanSTRv2FeatureClauses(), CMacroFunction_ParsedText::x_GetSpecialField(), CFeatureItem::x_HasMethodtRNAscanSE(), CAutoDef::x_IsHumanSTR(), CUser_object::x_IsUnreviewedType(), CUser_object::x_IsUnverifiedType(), CSubmissionWizard::x_MergeDBLink(), CUser_object::x_RemoveUnreviewedType(), CUser_object::x_RemoveUnverifiedType(), CFeatureGenerator::SImplementation::x_SetComment(), CBioseqContext::x_SetDataFromUserObjects(), CSplitDblinkQuals::x_SplitQuals(), CValidError_desc::x_ValidateStructuredComment(), CGff2Writer::xAssignFeatureAttributesGoMarkup(), CBedTrackRecord::xImportKeyValuePairs(), CVcfReader::xProcessDataLine(), and CWiggleWriter::xWriteTrackLine().

GetDay()

CDate_std_Base::TDay CDate_std_Base::GetDay ( void  ) const

inline

Get the Day member data.

Returns

Copy of the member data.

Definition at line 520 of file Date_std_.hpp.

References CDate_std_Base::CanGetDay(), CDate_std_Base::m_Day, and CSerialObject::ThrowUnassigned().

Referenced by AddDay(), AddMonth(), AddYear(), CDate_std::AsCTime(), BOOST_AUTO_TEST_CASE(), CheckCollectionDate(), CDate_std::Compare(), CDate_std::GetDate(), GetEmblDate(), s_CompareDates(), CAddSecondary::TransferDataToWindow(), CId1FetchApp::WriteHistoryTable(), CSeq_id_PDB_Info::x_NormalizeDate(), and XDateCheck().

GetDb()

const CDbtag_Base::TDb & CDbtag_Base::GetDb ( void  ) const

inline

Get the Db member data.

Returns

Reference to the member data.

Definition at line 220 of file Dbtag_.hpp.

References CDbtag_Base::CanGetDb(), CDbtag_Base::m_Db, and CSerialObject::ThrowUnassigned().

Referenced by CFeatGapInfo::AdjustProteinSeq(), CSeq_id::AdjustScore(), CSeq_id::BaseBlastScore(), CSeq_id::BaseFastaAAScore(), CSeq_id::BaseFastaNAScore(), BOOST_AUTO_TEST_CASE(), CReadDispatcher::CannotProcess(), CannotProcess(), CGeneralToLocalId::CGeneralToLocalId(), CDbtag::Compare(), CSeq_id::Compare(), CSeq_id::ComposeOSLT(), CSeqIdGuesser::CSeqIdGuesser(), CSortableSeq_id::CSortableSeq_id(), CNewCleanup_imp::DbtagBC(), CSeqFormatter::DumpAll(), CBlastDBExtractor::ExtractAccession(), ExtractGnomonModelNum(), CBlastDBExtractor::ExtractSeqId(), CSeq_id_General_Tree::FindInfo(), CSeq_id_General_Tree::FindMatch(), CSeq_id_General_Tree::FindOrCreate(), CFlatSubmitterSeqidQVal::Format(), CFlatXrefQVal::Format(), GetAccessionAndDatabaseSource(), GetCDDPssmIdFromSeqId(), CDbtag::GetDBFlags(), CWriteUtil::GetDbTag(), CAlignFormatUtil::GetDbType(), GetDirectLabel(), CValidErrorFormat::GetFeatureIdLabel(), CWGSDataLoader_Impl::GetFileInfoByGeneral(), variation::GetFocusLocusIDs(), CCSRABlobId::GetGeneralIdType(), GetGeneralOrLocal(), CSeqIdGuesser::GetIdStrings(), CWriteUtil::GetIdType(), CSeq_featHandler::GetLabel(), GetLabel(), CDbtag::GetLabel(), CCommentItem::GetStringForTPA(), CScope_Impl::GetTaxId(), CScope_Impl::GetTaxIds(), CGuiObjectInfoVariant::GetToolTip(), CDbtag::GetType(), CGeneralIDField::GetVal(), CEditingActionBiosourceDbxref::GetValue(), CEditingActionFeatDbxref::GetValue(), CEditingActionGeneralIdDb::GetValue(), CTraceDataProxy::HasData(), CSGTraceGraphDS::HasData(), CSeq_id::IdentifyAccession(), CDbtag::IsApproved(), CDbtag::IsApprovedNoCase(), CFeatGlyph::IsDbVar(), CEditingActionFileId::IsSetValue(), CEditingActionGeneralIdTag::IsSetValue(), CDbtag::IsSkippable(), IsStringId(), CSGSequenceDS::IsTraceAssembly(), CValidator::IsValidDbxref(), IsWGSGeneral(), CTraceDataProxy::LoadData(), CSGTraceGraphDS::LoadData(), CId1Reader::LoadSeq_idBlob_ids(), CId1Reader::LoadSeq_idSeq_ids(), CDbtag::Match(), Normalize(), CProcessor::OffsetId(), CSeq_id_General_Str_Info::Parse(), CSeq_id_General_Str_Info::TKey::ParseCaseVariant(), CSeq_id_General_PlainInfo::ParseCaseVariant(), SSNP_Info::ParseSeq_feat(), CWGSResolver_Ids::ParseWGSPrefix(), CPSGS_OSGResolveBase::ProcessResolveReply(), CFindASN1Dlg::ReplaceInDbxref(), Residue::Residue(), CWGSClient::ResolveGeneral(), s_AssignDbtag(), variation::CVariationUtil::s_AttachGeneIDdbxref(), s_FindSmartSeqId(), s_Fingerprint_Dbtag(), s_GetAlignmentTooltip(), CMacroFunction_MakeBoldXrefs::s_GetBarcodeId(), NSearchFeatPanel::s_GetFeatureLabel(), variation::CVariationUtil::CVariantPropertiesIndex::s_GetGeneID(), s_GetVariationDbtagLabel(), s_IsSkippableDbtag(), s_ShouldUseOriginalID(), s_SkipFeature(), SeqDB_SimplifySeqid(), CSeqDBImpl::SeqidToOids(), CSeq_id::Set(), CDbtag::SetAsMatchingTo(), sx_GetReadId(), TestCollidingAccessionFixes(), CSingleFeatValidator::Validate(), CValidError_imp::ValidateDbxref(), CValidError_bioseq::ValidateSeqDescContext(), CValidError_bioseq::ValidateSeqId(), CVDBBlastUtil::VDBIdType(), CFastaOstreamEx::x_AddDbxrefAttribute(), CFeatureItem::x_AddFTableDbxref(), CFeatureItem::x_AddQualsVariation(), CWriteDB_IsamIndex::x_AddTraceIds(), x_Assign(), CEditSeqId::x_CollectChangedIds(), CRemoveGeneralId::x_CollectChangedIds(), CSeq_id_Resolver__LRG::x_Create(), CSeq_id_General_Tree::x_FindInfo(), CCommentItem::x_GatherDescInfo(), CDBSourceItem::x_GatherInfo(), CFeatGlyph::x_GetFeatureId(), CSeqDBVol::x_GetHdrAsn1(), x_GetLabel_Content(), CPrimaryItem::x_GetStrForPrimary(), CReferenceItem::x_Init(), CFileIDField::x_IsNCBIFILEId(), CId2ReaderBase::x_ProcessGetSeqIdSeqId(), CCdregionValidator::x_ReportTranslationProblems(), CNewCleanup_imp::x_SplitDbtag(), CSeq_id_General_Tree::x_Unindex(), CSeq_id::x_WriteContentAsFasta(), CVcfWriter::x_WriteFeatureInfo(), and XISAGappedSeqLoc().

GetDbtag()

const CPerson_id_Base::TDbtag & CPerson_id_Base::GetDbtag

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 115 of file Person_id_.cpp.

References CPerson_id_Base::CheckSelected(), CPerson_id_Base::e_Dbtag, and CPerson_id_Base::m_object.

GetFields()

const CUser_field_Base::C_Data::TFields & CUser_field_Base::C_Data::GetFields ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 901 of file User_field_.hpp.

Referenced by CFlatModelEvQVal::Format(), GetIdField(), CUser_object::GetRefGeneTrackingAssembly(), CUser_object::GetRefGeneTrackingIdenticalTo(), CWriteUtil::GetStringForModelEvidence(), CCommentItem::GetStringForRefTrack(), CCommentItem::GetStringForTPA(), CUser_object::CRefGeneTrackingAccession::MakeAccessionFromUserField(), s_CountAccessions(), s_ExtractKeys(), s_GetAssemblyInfo(), s_GetDBTree(), s_GetGOText(), s_GetModelEvidance(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddGoQuals(), CFeatureItem::x_AddQualsExt(), CGuiObjectInfoSeq_align::x_AddUserObject(), CRegistryReadView::x_GetKeys(), CCommonComponentScorer::x_GetUserCompList(), CAutoDefOptions::x_MakeModifierList(), CAutoDefOptions::x_SetModifierList(), CVcfWriter::x_WriteFeatureGenotypeData(), and CGff2Writer::xAssignFeatureAttributesGoMarkup().

GetFirst()

const CName_std_Base::TFirst & CName_std_Base::GetFirst ( void  ) const

inline

Get the First member data.

Returns

Reference to the member data.

Definition at line 469 of file Name_std_.hpp.

References CName_std_Base::CanGetFirst(), CName_std_Base::m_First, and CSerialObject::ThrowUnassigned().

Referenced by AddContact(), NMacroUtil::ApplyAuthorNames(), NMacroUtil::ApplyFirstName(), NMacroUtil::ApplyMiddleInitial(), CValidator::BadCharsInAuthor(), BOOST_AUTO_TEST_CASE(), FixCapitalization(), FixInitials(), GenerateInitials(), CPubField::GetAuthorField(), CEditingActionDescAuthorFirstName::GetValue(), CEditingActionDescAuthorInitials::GetValue(), MoveMiddleToFirst(), NMacroUtil::RemoveFirstName(), NMacroUtil::RemoveMiddleInitial(), CFindASN1Dlg::ReplaceInAuthor(), CSubmitterNamePanel::ReportMissingFields(), CMacroFunction_AuthorFix::s_BuildName(), CCleanup::s_CleanupNameStdBC(), CCleanup::s_FixEtAl(), CMacroFunction_AuthorFix::s_FixInitials(), IAuthorEditor::s_FixInitials(), s_GetAuthorNames(), CMacroFunction_AuthorFix::s_MoveMiddleToFirst(), CSingleAuthorPanel::s_ParseInitialsFromName(), CMacroFunction_AuthorFix::s_ReverseAuthorNames(), CMacroFunction_AuthorFix::s_TruncateMiddleInitials(), CPubField::SetAuthorField(), CApplyAuthorsTreeItemData::SetData(), CEditingActionDescAuthorFirstName::SetValue(), CContactPanel::TransferDataToWindow(), CSubmitterPanel_Depr::TransferDataToWindow(), CValidError_imp::ValidateAuthorList(), CValidError_imp::ValidateAuthorsInPubequiv(), CValidError_imp::ValidateSubmitBlock(), CMacroFunction_AddPubAuthor::x_AddAuthor(), and CFixAuthorCap::x_ApplyToCAuth().

GetFull()

const CName_std_Base::TFull & CName_std_Base::GetFull ( void  ) const

inline

Get the Full member data.

Returns

Reference to the member data.

Definition at line 563 of file Name_std_.hpp.

References CName_std_Base::CanGetFull(), CName_std_Base::m_Full, and CSerialObject::ThrowUnassigned().

Referenced by CPerson_id::GetLabel(), CAuthor::GetLabelV2(), and CFindASN1Dlg::ReplaceInAuthor().

GetHour()

CDate_std_Base::THour CDate_std_Base::GetHour ( void  ) const

inline

Get the Hour member data.

Returns

Copy of the member data.

Definition at line 614 of file Date_std_.hpp.

References CDate_std_Base::CanGetHour(), CDate_std_Base::m_Hour, and CSerialObject::ThrowUnassigned().

Referenced by CDate_std::AsCTime(), CDate_std::Compare(), CDate_std::GetDate(), CNewCleanup_imp::x_DateStdBC(), and CSeq_id_PDB_Info::x_NormalizeDate().

GetId()

CObject_id_Base::TId CObject_id_Base::GetId ( void  ) const

inline

Get the variant data.

Returns

Copy of the variant data.

Definition at line 270 of file Object_id_.hpp.

References CObject_id_Base::CheckSelected(), CObject_id_Base::e_Id, and CObject_id_Base::m_Id.

Referenced by CThreeFeatRecord::AddFeature(), CFeatureGenePanel::AddReciprocicalXref(), AddToFeatureIdColumn(), subfuse::CSubmissionCollector::AdjustLocalIds(), AdjustSingleFeature(), CApplyFBOL::apply(), CBarcodeTool::ApplyDbxrefs(), CGffRecord::AssignSeqId(), CObject_id::AsString(), BOOST_AUTO_TEST_CASE(), CBioseqIndex::CBioseqIndex(), CGeneralToLocalId::CGeneralToLocalId(), CComment_rule::CheckGeneralField(), CLocalToGeneralId::CLocalToGeneralId(), CSeq_id::ComposeOSLT(), CBlobSplitterImpl::CopySkeleton(), CRemoveSeqId::CRemoveSeqId(), CSeq_id_Local_Info::CSeq_id_Local_Info(), CSeqIdGuesser::CSeqIdGuesser(), CSortableSeq_id::CSortableSeq_id(), CNewCleanup_imp::DbtagBC(), CCleanup::ExpandGeneToIncludeChildren(), FindHighestFeatureId(), CSeqDBGiList::FindId(), CSeqDBNegativeList::FindId(), CSeq_id_General_Tree::FindMatch(), CSeq_id_Local_Tree::FindOrCreate(), CSeq_id_General_Tree::FindOrCreate(), fta_sort_biosource(), GetAccessionAndDatabaseSource(), CWriteUtil::GetDbTag(), CUser_field::GetFieldRef(), CWGSDataLoader_Impl::GetFileInfoByGeneral(), variation::GetFocusLocusIDs(), GetGeneForFeature(), CScoreLookup::GetGeneId(), GetGeneralOrLocal(), CObject_id::GetGi(), CAlignFormatUtil::GetGnlID(), GetIdField(), CSeqIdGuesser::GetIdStrings(), CObject_id::GetIdType(), CSeq_featHandler::GetLabel(), CGuiObjectInfoVariant::GetLinks(), CAnnotObject_Info::GetLocsTypes(), CSeq_id_Local_Info::GetPackedSeqId(), CReadSharedObjectIdHookBase::GetSharedObject_id(), CScope_Impl::GetTaxId(), CScope_Impl::GetTaxIds(), CGuiObjectInfoVariant::GetToolTip(), CEditingActionBiosourceDbxref::GetValue(), CEditingActionFeatDbxref::GetValue(), IsLocalID(), CValidator::IsValidDbxref(), CFeatComparatorByLabel::Less(), CTraceDataProxy::LoadData(), CSGTraceGraphDS::LoadData(), Make_SeqID_String(), OjectIdsAreEqual(), SChildLess::operator()(), CSeq_id_General_Id_Info::Pack(), CPSGS_OSGResolveBase::ProcessResolveReply(), CFeaturePropagator::Propagate(), CFeaturePropagator::PropagateFeatureList(), CDUpdater::reformatBioseq(), RemapOtherProtFeats(), CCleanup::RepairXrefs(), Residue::Residue(), CWGSClient::ResolveGeneral(), s_AreLinkedToDifferentFeats(), s_AssignObject_id(), variation::CVariationUtil::s_AttachGeneIDdbxref(), s_FindHighestFeatId(), CCreateGeneModelTask::s_FindHighestFeatId(), CFixFeatureId::s_FindHighestFeatureId(), s_Fingerprint_Object_id(), s_GeneralTagsMatch(), s_GetAlignmentTooltip(), s_GetBareId(), s_GetBlastScore(), s_GetFeatureIdLabel(), NSearchFeatPanel::s_GetFeatureLabel(), variation::CVariationUtil::CVariantPropertiesIndex::s_GetGeneID(), s_IsRelated(), CFixFeatureId::s_ReassignFeatureIds(), s_ReplaceLocalId(), s_UnpackUserField(), s_UpdateFeatureId(), CFixFeatureId::s_UpdateFeatureIds(), SeqDB_SimplifySeqid(), CSeq_id::Set(), CObject_id::SetAsMatchingTo(), sFeatureHasXref(), sGetFeatMapKey(), sx_MakeUniqueId(), CValidError_imp::Validate(), CValidError_imp::ValidateDbxref(), CFastaOstreamEx::x_AddDbxrefAttribute(), CFeatureItem::x_AddFTableDbxref(), CWriteDB_IsamIndex::x_AddTraceIds(), CAlnTableDS::x_AdjustColumns(), x_Assign(), CWriteDB_Impl::x_BuildDeflinesFromBioseq(), CEditSeqId::x_CollectChangedIds(), CDeltaBlastTestFixture::x_CountNumberUniqueIds(), CBioseqEditor::x_DeleteObject(), CSeq_id_General_Tree::x_FindInfo(), CSeq_id_Local_Tree::x_FindInfo(), CVectorScreen::x_FindLocalId(), CDBSourceItem::x_FormatDBSourceID(), CCommentItem::x_GatherDescInfo(), CGsdbComment::x_GatherInfo(), CLocalIdComment::x_GatherInfo(), CFileIdComment::x_GatherInfo(), CBioseq_set_Info::x_GetBioseq_set_Id(), CBioseqEditor::x_GetDeleteCommand(), CFeatGlyph::x_GetFeatureId(), CSeqDBVol::x_GetHdrAsn1(), x_GetLabel_Content(), CFeatureGenerator::SImplementation::x_HandleCdsExceptions(), CFeatureGenerator::SImplementation::x_HandleRnaExceptions(), CValidError_feat::x_HasNonReciprocalXref(), CXcompareAnnotsApplication::x_ProcessComparison(), CId2ReaderBase::x_ProcessGetSeqIdSeqId(), CGeneModelFeatJob::x_ProcessLandMarkFeatures(), CCleanupHugeAsnReader::x_RecordFeatureId(), CDeflineGenerator::x_SetFlags(), COligoSpecificityTemplate::x_SortHit(), CSplitDataLoader::x_SplitSet(), CSeq_id_Local_Tree::x_Unindex(), CSeq_id_General_Tree::x_Unindex(), CVcfWriter::x_WriteFeatureId(), CVcfWriter::x_WriteFeatureInfo(), CThreeFeatManager::xFindExistingRecord(), CSrcWriter::xGatherDb(), CSrcWriter::xGatherTaxonId(), XISAGappedSeqLoc(), and CFeatTableEdit::xRenameFeatureId().

GetInitials()

const CName_std_Base::TInitials & CName_std_Base::GetInitials ( void  ) const

inline

Get the Initials member data.

Returns

Reference to the member data.

Definition at line 610 of file Name_std_.hpp.

References CName_std_Base::CanGetInitials(), CName_std_Base::m_Initials, and CSerialObject::ThrowUnassigned().

Referenced by NMacroUtil::ApplyFirstName(), NMacroUtil::ApplyMiddleInitial(), CValidator::BadCharsInAuthor(), BOOST_AUTO_TEST_CASE(), FixCapitalization(), FixInitials(), GenerateInitials(), CPubField::GetAuthorField(), pub_report::GetAuthorsFromList(), GetFirstAuthor(), CPerson_id::GetLabel(), CAuthor::GetLabelV2(), pub_report::GetNameFromStdName(), CEditingActionDescAuthorInitials::GetValue(), MoveMiddleToFirst(), fix_pub::PrintPub(), NMacroUtil::RemoveFirstName(), NMacroUtil::RemoveMiddleInitial(), CFindASN1Dlg::ReplaceInAuthor(), CCleanup::s_CleanupNameStdBC(), CMacroFunction_FixPubCaps::s_FixCapitalizationInAuthor(), CCleanup::s_FixEtAl(), CMacroFunction_AuthorFix::s_FixInitials(), IAuthorEditor::s_FixInitials(), CMacroFunction_AuthorFix::s_MoveMiddleToFirst(), CSingleAuthorPanel::s_ParseInitialsFromName(), CMacroFunction_AuthorFix::s_ReverseAuthorNames(), CMacroFunction_AuthorFix::s_TruncateMiddleInitials(), CPubField::SetAuthorField(), CEditingActionDescAuthorFirstName::SetValue(), fix_pub::TenAuthorsProcess(), CValidError_imp::ValidateAuthorList(), and CSrcWriter::xGather().

GetInt()

CUser_field_Base::C_Data::TInt CUser_field_Base::C_Data::GetInt ( void  ) const

inline

Get the variant data.

Returns

Copy of the variant data.

Definition at line 714 of file User_field_.hpp.

Referenced by CRemoveEmptyGenomeProjectsDB::ApplyToUserObject(), BOOST_AUTO_TEST_CASE(), BOOST_AUTO_TEST_SUITE_END(), CComment_rule::CheckFieldValue(), CComment_rule::CheckGeneralField(), CLDBlockGlyph::CLDBlockGlyph(), CFlatModelEvQVal::Format(), CRegistryFile::FromConfigFile(), CDockLayoutTree::CNode::FromUserObject(), CBLASTParams::FromUserObject(), CConstSageData::GetCount(), CSGUtils::GetFeatFetchDepth(), CSettingsSet::GetInt(), CUser_field::GetInt(), CAnnotObject_Info::GetLocsTypes(), CSeq_annot_SplitInfo::GetName(), CFlatGoQVal::GetPubmedId(), CBlastQuerySourceBioseqSet::GetSegmentInfo(), CWriteUtil::GetStringForModelEvidence(), CCommentItem::GetStringForRefTrack(), CGuiObjectInfoSeq_align::GetToolTip(), CEditingActionDescGenomeProjectId::GetValue(), CPhyloSelectionSet::InitFromUserObject(), CPhyTreeView::InitView(), CComment_rule::IsValid(), CTableDelimiterRules::LoadAsn(), CTableImportColumn::LoadAsn(), MakeCompartments(), SSNP_Info::ParseSeq_feat(), CTabularFormatter_AssemblyInfo::Print(), CDemoSeqQaApp::Run(), s_CheckTraceMateAlign(), s_GetAssemblyInfo(), s_GetModelEvidance(), s_GetSegmentFlags(), s_GetUserObjectContent(), s_ScanRecursive(), sWindowPosFromUserObject(), CBedWriter::WriteAnnot(), CGuiObjectInfoSeq_align::x_AddUserObject(), CBLASTParams::x_FromUserObject(), CGenomeProjectItem::x_GatherInfo(), CCommonComponentScorer::x_GetUserCompList(), CBamRefSeqInfo::x_LoadRangesCov(), and CSeq_annot_Info::x_UpdateName().

GetInts()

const CUser_field_Base::C_Data::TInts & CUser_field_Base::C_Data::GetInts ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 841 of file User_field_.hpp.

Referenced by CDockLayoutTree::CNode::FromUserObject(), CSettingsSet::GetIntVec(), CAnnotObject_Info::GetLocsTypes(), CPhyloSelectionSet::InitFromUserObject(), CTableDelimiterRules::LoadAsn(), CCleanup::s_AddNumToUserField(), s_GetModelEvidance(), and s_ScanRecursive().

GetLabel()

const CUser_field_Base::TLabel & CUser_field_Base::GetLabel ( void  ) const

inline

Get the Label member data.

Returns

Reference to the member data.

Definition at line 947 of file User_field_.hpp.

References CUser_field_Base::m_Label, and CUser_field_Base::ResetLabel().

Referenced by CRemoveEmptyGenomeProjectsDB::ApplyToUserObject(), CModifyStructuredComment::ApplyToUserObject(), CComment_rule::CheckGeneralField(), CUser_field::DeleteField(), CFlatModelEvQVal::Format(), CNewCleanup_imp::GeneFeatBC(), CUser_object::GetCategory(), CSGUtils::GetFeatFetchDepth(), CBioseq_Info::GetFeatureFetchPolicy(), CUser_field::GetFieldRef(), CUser_object::GetFieldRef(), CUser_field::GetFieldsMap(), GetIdField(), CStructCommentSubpanel::GetLabelsFromSeq(), CAnnotObject_Info::GetLocsTypes(), GetPrefixOrSuffixType(), CProductStringBuilder::GetProductString(), CWriteUtil::GetStringForModelEvidence(), CCommentItem::GetStringForRefTrack(), CReadUtil::GetTrackValue(), CBankITCommentField::GetVals(), CLocalIDField::GetVals(), CLocalIDField::IsEmpty(), CGenomeProjectField::IsGenomeProjectID(), IsMatchingIdMissing(), CEditingActionDescUserObject::Modify(), CEditingActionDescStructCommFieldName::Modify(), CEditingActionDescLocalId::Modify(), CEditingActionDescComment::Modify(), SSNP_Info::ParseSeq_feat(), CDUpdater::reformatBioseq(), CEditingActionDescGenomeProjectId::ResetValue(), CEditingActionDescStructCommDbName::ResetValue(), RestoreModelAttributes(), CDemoSeqQaApp::Run(), CCleanup::s_CleanupGeneOntology(), CCleanup::s_CleanupGenomeAssembly(), CCleanup::s_CleanupStructuredComment(), s_CountAccessions(), s_ExtractKeys(), s_FastaGetOriginalID(), s_FieldHasLabel(), s_GetAssemblyInfo(), s_GetModelEvidance(), s_GetMrnaProteinLink(), s_GetOriginalID(), s_GetUserObjectContent(), s_IsGnomonModel(), s_IsSuppressField(), CMacroFunction_SetStructCommDb::s_MoveSuffixToTheEnd(), s_Render_Feat_Evidence(), s_ScanRecursive(), s_UnpackUserField(), s_UserFieldCompare(), CUser_object::SetFieldRef(), CUser_field::SetFieldRef(), CMacroFunction_AddDBLink::TheFunction(), CMacroFunction_ParseToStructComm::TheFunction(), CValidError_desc::ValidateDblink(), CValidError_bioseq::ValidateSeqDescContext(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddGoQuals(), CFeatureItem::x_AddQualsExt(), CGuiObjectInfoSeq_align::x_AddUserObject(), x_AlmostEquals(), CBioseqContext::x_CheckForShowComments(), CFeatureGenerator::SImplementation::x_CheckMatch(), CCleanup::x_CleanupUserField(), CTracebackSearchTestFixture::x_FindUsedGis(), CGenomeProjectItem::x_GatherInfo(), CAlignmentSmear::x_GetAnnotName(), CModifySeqId::x_GetRemoveOriginalIdCommand(), CMacroFunction_ParsedText::x_GetSpecialField(), x_GetTentativeName(), CFeatureItem::x_HasMethodtRNAscanSE(), x_HasTentativeName(), CBioseqIndex::x_InitDescs(), CStructuredCommentField::x_InsertFieldAtCorrectPosition(), CStructCommFieldValuePair::x_InsertFieldAtCorrectPosition(), CUser_object::x_IsUnreviewedType(), CUser_object::x_IsUnverifiedType(), CBioseqContext::x_SetDataFromUserObjects(), CDeflineGenerator::x_SetFlags(), CNullProcess::x_UserFieldCompare(), CGff2Writer::xAssignFeatureAttributesGoMarkup(), CSrcWriter::xGetOriginalId(), and CWiggleWriter::xWriteTrackLine().

GetLast()

const CName_std_Base::TLast & CName_std_Base::GetLast ( void  ) const

inline

Get the Last member data.

Returns

Reference to the member data.

Definition at line 422 of file Name_std_.hpp.

References CName_std_Base::CanGetLast(), CName_std_Base::m_Last, and CSerialObject::ThrowUnassigned().

Referenced by AddContact(), CValidator::BadCharsInAuthor(), FixCapitalization(), fta_check_long_last_name(), CPubField::GetAuthorField(), pub_report::GetAuthorsFromList(), GetFirstAuthor(), CPerson_id::GetLabel(), CAuthor::GetLabelV2(), pub_report::GetNameFromStdName(), CEditingActionDescAuthorLastName::GetValue(), CValidError_imp::HasName(), SAuthorEmpty::operator()(), fix_pub::PrintPub(), CFindASN1Dlg::ReplaceInAuthor(), CSubmitterNamePanel::ReportMissingFields(), CCleanup::s_CleanupNameStdBC(), CCleanup::s_FixEtAl(), s_GetAuthorMatchString(), s_GetStringFromAuthor(), CMacroFunction_AuthorFix::s_ReverseAuthorNames(), CPubField::SetAuthorField(), fix_pub::TenAuthorsProcess(), CContactPanel::TransferDataToWindow(), CSubmitterPanel_Depr::TransferDataToWindow(), CValidError_imp::ValidateAuthorList(), CValidError_imp::ValidateAuthorsInPubequiv(), CValidError_imp::ValidateSubmitBlock(), CFixAuthorCap::x_ApplyToCAuth(), CConvertAllAuthorToConsortium::x_ApplyToCAuth(), CConvertAuthorToConsortiumWhereConstraint::x_ApplyToCAuth(), and CSrcWriter::xGather().

GetLim()

CInt_fuzz_Base::TLim CInt_fuzz_Base::GetLim ( void  ) const

inline

Get the variant data.

Returns

Copy of the variant data.

Definition at line 642 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::CheckSelected(), CInt_fuzz_Base::e_Lim, and CInt_fuzz_Base::m_Lim.

Referenced by CConvertGapsBySize::apply(), CCombineAdjacentGaps::apply_impl(), BOOST_AUTO_TEST_CASE(), CSeq_loc::ChangeToPackedInt(), CSeq_loc_Conversion::ConvertInterval(), CSeq_loc_Conversion::ConvertPoint(), FixMixLoc(), GetDeltaSeqSummary(), variation::GetFuzzSign(), CInt_fuzz::GetLabel(), GetLowHighFromSeqLoc(), CSeq_point::IsLeftOf(), CPacked_seqpnt::IsPartialStart(), CSeq_interval::IsPartialStart(), CSeq_point::IsPartialStart(), CPacked_seqpnt::IsPartialStop(), CSeq_interval::IsPartialStop(), CSeq_point::IsPartialStop(), variation::IsPureFuzzPoint(), CSeq_point::IsRightOf(), CPacked_seqpnt::IsTruncatedStart(), CSeq_interval::IsTruncatedStart(), CSeq_point::IsTruncatedStart(), CPacked_seqpnt::IsTruncatedStop(), CSeq_interval::IsTruncatedStop(), CSeq_point::IsTruncatedStop(), CInt_fuzz::Negate(), SSNP_Info::ParseSeq_feat(), CSeq_loc_Conversion::ReverseFuzz(), s_CheckFuzz(), variation::CHgvsParser::s_IntWithFuzzToStr(), s_IsBetween(), s_PrintLocAsJavascriptArray(), s_RemoveBogusFuzzFromIntervals_Helper(), variation::CHgvsParser::s_SetStartOffset(), variation::CHgvsParser::s_SetStopOffset(), SeqIntPartialCheck(), CNewCleanup_imp::SeqLocBC(), SeqLocPartialCheck(), variation::SwapLtGtFuzz(), CValidError_bioseq::ValidateDelta(), CSeqMap::x_Add(), CFlatSeqLoc::x_Add(), CRangeWithFuzz::x_AddFuzz(), x_Assign(), CGvfWriteRecord::x_AssignAttributeEndRange(), CGvfWriteRecord::x_AssignAttributeStartRange(), CSGFeatureJob::x_CalcIntervals(), CFeatGlyph::x_DrawFeatureBar(), CFeatGlyph::x_DrawRSites(), CSeq_loc_Mapper_Base::x_FixNonsenseFuzz(), CFlatSeqLoc::x_FuzzToDisplayed(), variation_ref::CHgvsParser::x_general_pos(), CFeatGlyph::x_GetUndefinedBp_from(), CFeatGlyph::x_GetUndefinedBp_to(), variation_ref::CHgvsParser::x_IntWithFuzzToStr(), CMappingRange::x_Map_Fuzz(), CSeq_loc_Mapper_Base::x_NextMappingRange(), CValidError_imp::x_ReportInvalidFuzz(), and variation_ref::CHgvsParser::x_seq_ref().

GetMax()

CInt_fuzz_Base::C_Range::TMax CInt_fuzz_Base::C_Range::GetMax ( void  ) const

inline

Get the Max member data.

Returns

Copy of the member data.

Definition at line 472 of file Int_fuzz_.hpp.

References CSerialObject::ThrowUnassigned().

Referenced by CInt_fuzz::AssignTranslated(), CFeatGlyph::GetRange(), variation::CHgvsParser::s_IntWithFuzzToStr(), CFlatSeqLoc::x_Add(), CRangeWithFuzz::x_AddFuzz(), x_Assign(), CGvfWriteRecord::x_AssignAttributeEndRange(), CGvfWriteRecord::x_AssignAttributeStartRange(), CFeatGlyph::x_DrawFeatureBar_sv(), variation_ref::CHgvsParser::x_IntWithFuzzToStr(), and xgbload_number().

GetMiddle()

const CName_std_Base::TMiddle & CName_std_Base::GetMiddle ( void  ) const

inline

Get the Middle member data.

Returns

Reference to the member data.

Definition at line 516 of file Name_std_.hpp.

References CName_std_Base::CanGetMiddle(), CName_std_Base::m_Middle, and CSerialObject::ThrowUnassigned().

Referenced by CFindASN1Dlg::ReplaceInAuthor(), and CCleanup::s_CleanupNameStdBC().

GetMin()

CInt_fuzz_Base::C_Range::TMin CInt_fuzz_Base::C_Range::GetMin ( void  ) const

inline

Get the Min member data.

Returns

Copy of the member data.

Definition at line 519 of file Int_fuzz_.hpp.

References CSerialObject::ThrowUnassigned().

Referenced by CInt_fuzz::AssignTranslated(), CFeatGlyph::GetRange(), variation::CHgvsParser::s_IntWithFuzzToStr(), CFlatSeqLoc::x_Add(), CRangeWithFuzz::x_AddFuzz(), x_Assign(), CGvfWriteRecord::x_AssignAttributeEndRange(), CGvfWriteRecord::x_AssignAttributeStartRange(), CFeatGlyph::x_DrawFeatureBar_sv(), variation_ref::CHgvsParser::x_IntWithFuzzToStr(), and xgbload_number().

GetMinute()

CDate_std_Base::TMinute CDate_std_Base::GetMinute ( void  ) const

inline

Get the Minute member data.

Returns

Copy of the member data.

Definition at line 661 of file Date_std_.hpp.

References CDate_std_Base::CanGetMinute(), CDate_std_Base::m_Minute, and CSerialObject::ThrowUnassigned().

Referenced by CDate_std::AsCTime(), CDate_std::Compare(), CDate_std::GetDate(), CNewCleanup_imp::x_DateStdBC(), and CSeq_id_PDB_Info::x_NormalizeDate().

GetMl()

const CPerson_id_Base::TMl & CPerson_id_Base::GetMl ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 371 of file Person_id_.hpp.

References CPerson_id_Base::CheckSelected(), CPerson_id_Base::e_Ml, and CPerson_id_Base::m_string.

Referenced by CAuthor::ConvertMlToStandard(), pub_report::GetAuthorsFromList(), GetAuthorString(), CPerson_id::GetLabel(), CAuthor::GetLabelV2(), pub_report::GetNameFromStdName(), CValidError_imp::HasName(), SAuthorEmpty::operator()(), and CFindASN1Dlg::ReplaceInAuthor().

GetMonth()

CDate_std_Base::TMonth CDate_std_Base::GetMonth ( void  ) const

inline

Get the Month member data.

Returns

Copy of the member data.

Definition at line 473 of file Date_std_.hpp.

References CDate_std_Base::CanGetMonth(), CDate_std_Base::m_Month, and CSerialObject::ThrowUnassigned().

Referenced by AddDay(), AddMonth(), AddYear(), CDate_std::AsCTime(), BOOST_AUTO_TEST_CASE(), CheckCollectionDate(), CDate_std::Compare(), CDate_std::GetDate(), GetEmblDate(), s_CompareDates(), CAddSecondary::TransferDataToWindow(), CId1FetchApp::WriteHistoryTable(), CSeq_id_PDB_Info::x_NormalizeDate(), and XDateCheck().

GetName()

const CPerson_id_Base::TName & CPerson_id_Base::GetName

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 137 of file Person_id_.cpp.

References CPerson_id_Base::CheckSelected(), CPerson_id_Base::e_Name, and CPerson_id_Base::m_object.

Referenced by CValidator::BadCharsInAuthor(), get_auth_from_toks(), CReferenceItem::GetAuthNames(), CPubField::GetAuthorField(), pub_report::GetAuthorsFromList(), GetAuthorString(), GetFirstAuthor(), CPerson_id::GetLabel(), CAuthor::GetLabelV2(), pub_report::GetNameFromStdName(), CEditingActionDescAuthorFirstName::GetValue(), CEditingActionDescAuthorLastName::GetValue(), CEditingActionDescAuthorSuffix::GetValue(), CEditingActionDescAuthorInitials::GetValue(), HasAuthor(), CValidError_imp::HasName(), CAuthorNamesPanel::IsAuthorEmpty(), CSingleAuthorPanel::IsPlaceholder(), CEditingActionDescAuthorFirstName::IsSetValue(), CEditingActionDescAuthorLastName::IsSetValue(), CEditingActionDescAuthorSuffix::IsSetValue(), CEditingActionDescAuthorInitials::IsSetValue(), SAuthorEmpty::operator()(), fix_pub::PrintPub(), CFindASN1Dlg::ReplaceInAuthor(), CSubmitterNamePanel::ReportMissingFields(), IAuthorEditor::s_FixInitials(), s_GetAuthorMatchString(), s_GetStringFromAuthor(), CPubField::SetAuthorField(), CApplyAuthorsTreeItemData::SetData(), CEditingActionDescAuthorFirstName::SetValue(), fix_pub::TenAuthorsProcess(), CSubmitterNamePanel::TransferDataFromWindow(), CValidError_imp::ValidateSubmitBlock(), CFixAuthorCap::x_ApplyToCAuth(), CStripAuthorSuffix::x_ApplyToCAuth(), CConvertAllAuthorToConsortium::x_ApplyToCAuth(), CConvertAuthorToConsortiumWhereConstraint::x_ApplyToCAuth(), and CSrcWriter::xGather().

GetNum()

CUser_field_Base::TNum CUser_field_Base::GetNum ( void  ) const

inline

Get the Num member data.

Returns

Copy of the member data.

Definition at line 984 of file User_field_.hpp.

References CUser_field_Base::CanGetNum(), CUser_field_Base::m_Num, and CSerialObject::ThrowUnassigned().

Referenced by CollectUserField(), CEditingActionDescUserObject::Modify(), CCleanup::s_AddNumToUserField(), and s_GetModelEvidance().

GetObject()

const CUser_field_Base::C_Data::TObject & CUser_field_Base::C_Data::GetObject

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 176 of file User_field_.cpp.

Referenced by BOOST_AUTO_TEST_CASE(), CDockContainerDescr::FromUserObject(), CBLASTParams::FromUserObject(), CWndLayoutReg::GetDefaultLayout(), CUser_object::GetExperimentType(), CWndLayoutReg::GetLayout(), CTreeLabel::InitializeFromUserObject(), s_IsGnomonModel(), s_Render_Feat_Evidence(), s_ScanRecursive(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddQualsExt(), and CFeatureItem::x_HasMethodtRNAscanSE().

GetObjects()

const CUser_field_Base::C_Data::TObjects & CUser_field_Base::C_Data::GetObjects ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 921 of file User_field_.hpp.

Referenced by CDockLayoutTree::CNode::FromUserObject(), CComplexRelation::FromUserObject(), CPhyloSelectionSetMgr::InitFromUserObject(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddQualsExt(), and CNetBLASTUIDataSource::x_LoadJobDescriptors().

GetOs()

const CUser_field_Base::C_Data::TOs & CUser_field_Base::C_Data::GetOs ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 795 of file User_field_.hpp.

Referenced by CSnpBitfieldFactory::CreateBitfield(), CSnpBitfield2::CSnpBitfield2(), and SSNP_Info::ParseSeq_feat().

GetOss()

const CUser_field_Base::C_Data::TOss & CUser_field_Base::C_Data::GetOss ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 881 of file User_field_.hpp.

Referenced by CCleanup::s_AddNumToUserField().

GetP_m()

CInt_fuzz_Base::TP_m CInt_fuzz_Base::GetP_m ( void  ) const

inline

Get the variant data.

Returns

Copy of the variant data.

Definition at line 582 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::CheckSelected(), CInt_fuzz_Base::e_P_m, and CInt_fuzz_Base::m_P_m.

Referenced by CInt_fuzz::GetLabel(), CFlatSeqLoc::x_Add(), CRangeWithFuzz::x_AddFuzz(), and x_Assign().

GetPct()

CInt_fuzz_Base::TPct CInt_fuzz_Base::GetPct ( void  ) const

inline

Get the variant data.

Returns

Copy of the variant data.

Definition at line 615 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::CheckSelected(), CInt_fuzz_Base::e_Pct, and CInt_fuzz_Base::m_Pct.

Referenced by CInt_fuzz::AssignTranslated(), CInt_fuzz::GetLabel(), CFlatSeqLoc::x_Add(), CRangeWithFuzz::x_AddFuzz(), and x_Assign().

GetRange()

const CInt_fuzz_Base::TRange & CInt_fuzz_Base::GetRange

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 159 of file Int_fuzz_.cpp.

References CInt_fuzz_Base::CheckSelected(), CInt_fuzz_Base::e_Range, and CInt_fuzz_Base::m_object.

Referenced by CInt_fuzz::AssignTranslated(), CInt_fuzz::GetLabel(), variation::CHgvsParser::s_IntWithFuzzToStr(), CFlatSeqLoc::x_Add(), CRangeWithFuzz::x_AddFuzz(), x_Assign(), CGvfWriteRecord::x_AssignAttributeEndRange(), CGvfWriteRecord::x_AssignAttributeStartRange(), CFeatGlyph::x_DrawFeatureBar_sv(), variation_ref::CHgvsParser::x_IntWithFuzzToStr(), CMappingRange::x_Map_Fuzz(), and xgbload_number().

GetReal()

CUser_field_Base::C_Data::TReal CUser_field_Base::C_Data::GetReal ( void  ) const

inline

Get the variant data.

Returns

Copy of the variant data.

Definition at line 741 of file User_field_.hpp.

Referenced by CLDBlockGlyph::CLDBlockGlyph(), CRegistryFile::FromConfigFile(), CUser_field::GetDouble(), CSettingsSet::GetReal(), CPhyloSelectionSet::InitFromUserObject(), MakeCompartments(), RestoreModelAttributes(), CDemoSeqQaApp::Run(), s_PassesFilter(), s_ScanRecursive(), CBLASTParams::x_FromUserObject(), CBamRefSeqInfo::x_LoadRangesCov(), CGraphTrack::x_LoadSettings(), and CVcfWriter::x_WriteFeatureQual().

GetReals()

const CUser_field_Base::C_Data::TReals & CUser_field_Base::C_Data::GetReals ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 861 of file User_field_.hpp.

Referenced by CSettingsSet::GetRealVec(), CCleanup::s_AddNumToUserField(), and s_ScanRecursive().

GetSeason()

const CDate_std_Base::TSeason & CDate_std_Base::GetSeason ( void  ) const

inline

Get the Season member data.

Returns

Reference to the member data.

Definition at line 560 of file Date_std_.hpp.

References CDate_std_Base::CanGetSeason(), CDate_std_Base::m_Season, and CSerialObject::ThrowUnassigned().

Referenced by CDate_std::Compare(), CDate_std::GetDate(), and s_CompareDates().

GetSecond()

CDate_std_Base::TSecond CDate_std_Base::GetSecond ( void  ) const

inline

Get the Second member data.

Returns

Copy of the member data.

Definition at line 708 of file Date_std_.hpp.

References CDate_std_Base::CanGetSecond(), CDate_std_Base::m_Second, and CSerialObject::ThrowUnassigned().

Referenced by CDate_std::AsCTime(), CDate_std::Compare(), CDate_std::GetDate(), and CSeq_id_PDB_Info::x_NormalizeDate().

GetStd()

const CDate_Base::TStd & CDate_Base::GetStd

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 109 of file Date_.cpp.

References CDate_Base::CheckSelected(), CDate_Base::e_Std, and CDate_Base::m_object.

Referenced by AddDay(), AddMonth(), AddYear(), CDate::AsCTime(), BOOST_AUTO_TEST_CASE(), CheckDate(), pub_report::CheckDate(), pub_report::CollectDataArt(), pub_report::CollectDataGen(), CDate::Compare(), CProceedingsPanel::CreateControls(), CProceedingsChapterPanel::CreateControls(), CPublisherPanel::CreateControls(), SCitMatch::FillFromArticle(), get_lanl_date(), CDate::GetDate(), GetDateString(), GetDocSumLabel(), CApplyPubQualTreeItemData::GetVariables(), IsDateInPast(), CSeq_id_PDB_Info::Normalize(), fix_pub::PrintPub(), CCleanup::s_CleanupGenomeAssembly(), s_CompareDates(), s_FormatCitGen(), s_FormatYear(), s_IsDateEmpty(), CRelaxedLookupDlg::SetPubdesc(), pub_report::CSkipPubUnpublishedHook::SkipObject(), CAddSecondary::TransferDataToWindow(), CProceedingsPanel::TransferDataToWindow(), CProceedingsChapterPanel::TransferDataToWindow(), CPublisherPanel::TransferDataToWindow(), CAuthListValidator::validate(), CValidError_imp::ValidatePubArticleNoPMID(), CValidError_imp::x_DowngradeForMissingAffil(), and CMacroFunction_SetPubStatus::x_SetStatus().

GetStr() [1/4]

const CDate_Base::TStr & CDate_Base::GetStr ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 306 of file Date_.hpp.

References CDate_Base::CheckSelected(), CDate_Base::e_Str, and CDate_Base::m_string.

Referenced by CDate::AsCTime(), CheckDate(), CDate::Compare(), CDate::GetDate(), GetDateString(), ICitationBase::GetParenthesizedYear(), s_CompareDates(), s_FormatYear(), and CValidError_imp::ValidatePubArticleNoPMID().

GetStr() [2/4]

const CObject_id_Base::TStr & CObject_id_Base::GetStr ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 297 of file Object_id_.hpp.

References CObject_id_Base::CheckSelected(), CObject_id_Base::e_Str, and CObject_id_Base::m_string.

Referenced by CSeq_feat::AddExt(), CApplyFBOL::apply(), CRmvCddFeatDbxref::apply_to(), CBarcodeTool::ApplyDbxrefs(), CReorderStructuredComment::ApplyToCSeq_entry_user(), CRemoveGenomeProjectsDB::ApplyToUserObject(), CRemoveEmptyGenomeProjectsDB::ApplyToUserObject(), CRemoveBankitComment::ApplyToUserObject(), CRemoveDuplicateStructuredComment::ApplyToUserObject(), CRemoveAllStructuredComment::ApplyToUserObject(), CRemoveEmptyStructuredComment::ApplyToUserObject(), CModifyStructuredComment::ApplyToUserObject(), CBedFeatureRecord::AssignDisplayData(), CGffRecord::AssignSeqId(), CGvfWriteRecord::AssignSource(), CGvfWriteRecord::AssignType(), CObject_id::AsString(), BOOST_AUTO_TEST_CASE(), CBioseqIndex::CBioseqIndex(), CFlatFileTextItem::CFlatFileTextItem(), CComment_rule::CheckGeneralField(), CLocalToGeneralId::CLocalToGeneralId(), CObject_id::Compare(), CSeq_id::ComposeOSLT(), CPrimaryEdit::CPrimaryEdit(), CRemoveSeqId::CRemoveSeqId(), CSeq_id_Local_Info::CSeq_id_Local_Info(), CSeqIdGuesser::CSeqIdGuesser(), CSortableSeq_id::CSortableSeq_id(), CNewCleanup_imp::DbtagBC(), CUser_field::DeleteField(), CSequenceEditingEventHandler::DeleteSpecificStructuredComment(), descr_cmp(), ExtractGnomonModelNum(), CSeq_align::FindExt(), CSeq_feat::FindExt(), CSeqDBGiList::FindId(), CSeqDBNegativeList::FindId(), CSeq_id_General_Tree::FindMatch(), NMacroUtil::FindNcbiAutofixUserObject(), CSeq_id_Local_Tree::FindOrCreate(), CSeq_id_General_Tree::FindOrCreate(), CFlatSubmitterSeqidQVal::Format(), CFlatModelEvQVal::Format(), fta_build_ena_user_object(), fta_dblink_has_sra(), fta_get_project_user_object(), fta_remove_cleanup_user_object(), fta_sort_biosource(), fta_tsa_tls_comment_dblink_check(), GetAccessionAndDatabaseSource(), CDUpdater::GetBlastDefline(), CUser_object::GetCategory(), CCreateSeqHistForTpa::GetCreateSeqHistFromTpaCommand(), CField_type::GetDBLinkFieldFromUserObject(), GetDBLinkIDs(), CWriteUtil::GetDbTag(), CWriteUtil::GetDescriptor(), CValidErrorFormat::GetDescriptorContent(), CEditObjectSeq_desc::GetDescriptorType(), GetDirectLabel(), CFlatFileViewContext::GetEditObject(), CUser_object::GetExperimentType(), CSGUtils::GetFeatFetchDepth(), CBioseq_Info::GetFeatureFetchPolicy(), CUser_field::GetFieldRef(), CUser_object::GetFieldRef(), CUser_field::GetFieldsMap(), CWGSDataLoader_Impl::GetFileInfoByGeneral(), CCSRABlobId::GetGeneralIdType(), GetGeneralOrLocal(), CGenomeAnnotComment::GetGenomeBuildNumber(), CAlignFormatUtil::GetGnlID(), CSeqIdGuesser::GetIdStrings(), CObject_id::GetIdType(), CSeq_featHandler::GetLabel(), GetLabel(), CStructCommentSubpanel::GetLabelsFromSeq(), CGuiObjectInfoVariant::GetLinks(), CAnnotObject_Info::GetLocsTypes(), CWGSDb::GetMasterDescrType(), GetNewGeneralProtId(), GetNewLocalProtId(), CUser_object::GetObjectType(), CVDBBlastUtil::GetOIDFromVDBSeqId(), CSeq_id_Local_Info::GetPackedSeqId(), GetPrefixOrSuffixType(), CProductStringBuilder::GetProductString(), GetSegSetDblink(), CReadSharedObjectIdHookBase::GetSharedObject_id(), CCommentItem::GetStringForBankIt(), CWriteUtil::GetStringForModelEvidence(), CCommentItem::GetStringForRefSeqGenome(), CCommentItem::GetStringForRefTrack(), CCommentItem::GetStringForTLS(), CCommentItem::GetStringForTPA(), CCommentItem::GetStringForTSA(), CCommentItem::GetStringForWGS(), CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), GetTitle(), CSequenceTrack::GetTooltip(), CGuiObjectInfoVariant::GetToolTip(), CGuiObjectInfoVariation::GetToolTip(), CReadUtil::GetTrackValue(), CWriteUtil::GetUserObjectByType(), CBankITCommentField::GetVals(), CLocalIDField::GetVals(), CEditingActionBiosourceDbxref::GetValue(), CEditingActionFeatDbxref::GetValue(), CTextView::InitView(), CDiscrepancyContext::IsBGPipe(), IsConsensus(), CDBLinkField::IsDBLink(), CTable2AsnContext::IsDBLink(), CLocalIDField::IsEmpty(), CVariationNormalization::isFullyShifted(), IsGeneOntology(), CGenomeProjectField::IsGenomeProject(), CGenomeProjectField::IsGenomeProjectID(), IsLocalID(), IsMatchingIdMissing(), CEditingActionDescGenomeProjectId::IsSetValue(), CEditingActionDescStructCommDbName::IsSetValue(), CComment_rule::IsStructuredComment(), CValidError_align::IsTpaAlignment(), CSeqEntrySource::IsUnverified(), CValidator::IsValidDbxref(), isVarNormType(), isVersionsObject(), CFeatComparatorByLabel::Less(), CLoadStructComments::LoadWithAccessions(), Make_SeqID_String(), MakeCompartments(), CEditingActionDescUserObject::Modify(), CEditingActionDescStructCommFieldName::Modify(), CEditingActionDescLocalId::Modify(), CEditingActionDescComment::Modify(), OjectIdsAreEqual(), CSeqIdValidate::operator()(), SChildLess::operator()(), CSeq_id_General_Str_Info::Pack(), CSeq_id_General_Str_Info::Parse(), CSeq_id_General_Str_Info::TKey::ParseCaseVariant(), CSeq_id_General_PlainInfo::ParseCaseVariant(), CSeq_id_Local_Info::ParseCaseVariant(), SSNP_Info::ParseSeq_feat(), CTabularFormatter_BestPlacementGroup::Print(), CTabularFormatter_AssemblyInfo::Print(), CRelation::RelationFromUserObject(), CDUpdater::RemoveBlastDefline(), CSeq_feat::RemoveExt(), CFindASN1Dlg::ReplaceInDbxref(), CFindASN1Dlg::ReplaceInSubmit(), CEditingActionDescGenomeProjectId::ResetValue(), CEditingActionDescStructCommDbName::ResetValue(), CWGSClient::ResolveGeneral(), RestoreModelAttributes(), RestoreModelMethod(), CDemoSeqQaApp::Run(), CDemoApp::Run(), s_AddCDS(), s_AddTopLevelGenomicLinks(), s_AssignObject_id(), CCleanup::s_CleanupGeneOntology(), CCleanup::s_CleanupGenomeAssembly(), CCleanup::s_CleanupStructuredComment(), s_CountAccessions(), s_ExtractBlastDefline(), s_ExtractKeys(), s_FastaGetOriginalID(), s_FieldHasLabel(), s_FindLocalId(), s_FindUserObjectTypeRecursive(), s_Fingerprint_Object_id(), s_GeneralTagsMatch(), s_GetAlignmentTooltip(), s_GetAssemblyInfo(), s_GetBareId(), s_GetBitScore(), s_GetContentLabel(), s_GetEvalue(), s_GetFeatureIdLabel(), NSearchFeatPanel::s_GetFeatureLabel(), s_GetModelEvidance(), s_GetMrnaProteinLink(), s_GetOriginalID(), s_GetSRASeqMetadata(), s_GetUserObjectContent(), s_GetUserObjectType(), s_HasTpaUserObject(), s_IdXrefsNotReciprocal(), s_IsGnomonModel(), s_IsModelEvidanceUop(), s_IsReportableStructuredComment(), s_IsSuppressField(), s_IsTpa(), s_IsUserType(), CMacroFunction_SetStructCommDb::s_MoveSuffixToTheEnd(), s_PopulateUserObject(), CMacroFunction_RemoveQual::s_RemoveFields(), s_Render_Feat_Evidence(), s_ReplaceLocalId(), s_ScanRecursive(), s_SeqDescCompare(), s_UnpackUserField(), SeqDB_SimplifySeqid(), CStructuredCommentsReader::SeqIdMatchesCommentId(), SeqIdMatchesMaster(), CSeq_id::Set(), CObject_id::SetAsMatchingTo(), CUser_object::SetFieldRef(), CUser_field::SetFieldRef(), CGffAlignmentRecord::SetScore(), CGffBaseRecord::SetScore(), CValidError_imp::Setup(), CEditingActionDescStructCommDbName::SetValue(), sFeatureHasXref(), sGetFeatMapKey(), CPropagateDescriptors::ShouldStayInPlace(), sInheritScores(), sPrepareSeqAlign(), sx_GetReadId(), sx_MakeUniqueId(), TestCollidingAccessionFixes(), testNuclHitList(), CMacroFunction_AddDBLink::TheFunction(), CMacroFunction_ParseToStructComm::TheFunction(), CSequencingTechnologyPanel::TransferDataToWindow(), CStructuredCommentPanel::TransferDataToWindow(), CValidError_desc::ValidateDblink(), CValidError_imp::ValidateDbxref(), CValidError_bioseqset::ValidateNucProtSet(), CValidError_annot::ValidateSeqAnnot(), CValidError_bioseq::ValidateSeqDescContext(), CValidError_bioseq::ValidateSeqId(), CValidError_desc::ValidateUser(), CValidError_bioseq::ValidateWGSMaster(), CVDBBlastUtil::VDBIdType(), CFastaOstreamEx::x_AddDbxrefAttribute(), CFeatureItem::x_AddFTableDbxref(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddGoQuals(), CWriteDB_IsamIndex::x_AddLocal(), CFeatureTableReader_Imp::x_AddQualifierToImp(), CFeatureItem::x_AddQualsExt(), CFeatureItem::x_AddQualsRegion(), CFeatureItem::x_AddQualsVariation(), CWriteDB_IsamIndex::x_AddStringIds(), CWriteDB_IsamIndex::x_AddTraceIds(), CGuiObjectInfoSeq_align::x_AddUserObject(), CAlnTableDS::x_AdjustColumns(), CMultiAligner::x_AlignClusterQueries(), CMultiAligner::x_AlignFillerBlocks(), x_AlmostEquals(), CRemoveUnreviewed::x_ApplyToUserObject(), x_Assign(), CGvfWriteRecord::x_AssignAttributeID(), CGvfWriteRecord::x_AssignAttributeParent(), CGvfWriteRecord::x_AssignAttributesCustom(), CGvfWriteRecord::x_AssignAttributeVarType(), CBioseqContext::x_CheckForShowComments(), CFeatureGenerator::SImplementation::x_CheckMatch(), CEditSeqId::x_CollectChangedIds(), CSeq_id_Resolver__LRG::x_Create(), CInversionMergeAligner::x_CreateDiscAlignment(), CSNPSearchJob::x_DoSearch(), CSeq_id_General_Tree::x_FindInfo(), CSeq_id_Local_Tree::x_FindInfo(), CVectorScreen::x_FindLocalId(), CMultiAligner::x_FindRPSHits(), CTracebackSearchTestFixture::x_FindUsedGis(), CGencollIdMapper::x_FixImperfectId(), CDBSourceItem::x_FormatDBSourceID(), CCommentItem::x_GatherDescInfo(), CGenomeAnnotComment::x_GatherInfo(), CLocalIdComment::x_GatherInfo(), CFileIdComment::x_GatherInfo(), CGenomeProjectItem::x_GatherInfo(), CPrimaryItem::x_GatherInfo(), CGenbankGatherer::x_GatherTLS(), CGenbankGatherer::x_GatherTSA(), CGenbankGatherer::x_GatherWGS(), CAlignmentSmear::x_GetAnnotName(), CWriteDB_Impl::x_GetBioseqBinaryHeader(), CWriteDB_Impl::x_GetFastaReaderDeflines(), CFeatGlyph::x_GetFeatureId(), x_GetLabel_Content(), x_GetMolLocTypeUserObj(), CModifySeqId::x_GetRemoveOriginalIdCommand(), CMacroFunction_ParsedText::x_GetSpecialField(), x_GetTentativeName(), CCommonComponentScorer::x_GetUserCompList(), CViewGraphic::x_GetViewSettingsFromParams(), CFeatureGenerator::SImplementation::x_HandleCdsExceptions(), CFeatureGenerator::SImplementation::x_HandleRnaExceptions(), CFeatureItem::x_HasMethodtRNAscanSE(), x_HasTentativeName(), CReferenceItem::x_Init(), CBioseqIndex::x_InitDescs(), CStructuredCommentField::x_InsertFieldAtCorrectPosition(), CStructCommFieldValuePair::x_InsertFieldAtCorrectPosition(), CSplitDblinkQuals::x_IsDblinkObj(), CSeq_loc_Mapper::x_IsUCSCRandomChr(), CUser_object::x_IsUnreviewedType(), CUser_object::x_IsUnverifiedType(), CGenbankFormatter::x_LocusHtmlPrefix(), CId2ReaderBase::x_ProcessGetSeqIdSeqId(), CAlignFilter::x_Query_Op(), CSequenceUpdater::x_RemoveDescriptorsFromImportedProducts(), CNewCleanup_imp::x_RemoveEmptyUserObject(), CBioseqContext::x_SetAuthorizedAccess(), CBioseqContext::x_SetDataFromUserObjects(), CMultiAligner::x_SetDomainHits(), CBioseqContext::x_SetEncode(), CBioseqContext::x_SetFiletrackURL(), CDeflineGenerator::x_SetFlags(), CBioseqContext::x_SetId(), CSeq_id_Local_Tree::x_Unindex(), CSeq_id_General_Tree::x_Unindex(), CSingleFeatValidator::x_ValidateLocusTagGeneralMatch(), CValidError_desc::x_ValidateStructuredComment(), CVcfWriter::x_WriteFeatureFilter(), CVcfWriter::x_WriteFeatureId(), CVcfWriter::x_WriteFeatureInfo(), CVcfWriter::x_WriteFeatureQual(), CGff3FlybaseWriter::xAssignAlignmentDensegScores(), CGff3FlybaseWriter::xAssignAlignmentSplicedScores(), CGff2Writer::xAssignFeatureAttributesGoMarkup(), CSrcWriter::xGatherDb(), CSrcWriter::xGatherTaxonId(), CFeatTableEdit::xGenerateTranscriptOrProteinId(), CSrcWriter::xGetOriginalId(), CFeatTableEdit::xRenameFeatureId(), CWiggleWriter::xWriteSingleGraphFixedStep(), and CWiggleWriter::xWriteTrackLine().

GetStr() [3/4]

const CPerson_id_Base::TStr & CPerson_id_Base::GetStr ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 391 of file Person_id_.hpp.

References CPerson_id_Base::CheckSelected(), CPerson_id_Base::e_Str, and CPerson_id_Base::m_string.

Referenced by pub_report::GetAuthorsFromList(), GetAuthorString(), CPerson_id::GetLabel(), CAuthor::GetLabelV2(), pub_report::GetNameFromStdName(), HasAuthor(), CValidError_imp::HasName(), SAuthorEmpty::operator()(), CFindASN1Dlg::ReplaceInAuthor(), and s_GetAuthorMatchString().

GetStr() [4/4]

const CUser_field_Base::C_Data::TStr & CUser_field_Base::C_Data::GetStr ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 694 of file User_field_.hpp.

Referenced by CLBLASTObjectLoader::AddDataLoader(), CTableAnnotDataSource::AddSeqLoc(), CTableAnnotDataSource::AddSnpSeqLoc(), CRemoveDuplicateStructuredComment::ApplyToUserObject(), CGvfWriteRecord::AssignSource(), CGvfWriteRecord::AssignType(), BOOST_AUTO_TEST_CASE(), CComment_rule::CheckFieldValue(), CComment_rule::CheckGeneralField(), CTableAnnotDataSource::CreateFeature(), CTableAnnotDataSource::CreateSnpFeature(), CTableAnnotDataSource::CreateSnps(), CSequenceEditingEventHandler::DeleteSpecificStructuredComment(), CGBDocument::DetachDataLoader(), CTableAnnotDataSource::FindLocations(), CFlatModelEvQVal::Format(), CRegistryFile::FromConfigFile(), CDockLayoutTree::CNode::FromUserObject(), CBLASTParams::FromUserObject(), CBioseq_Info::GetFeatureFetchPolicy(), GetFieldValueAsString(), CGenomeAnnotComment::GetGenomeBuildNumber(), GetHasFrameShift(), GetHasOrderAssignment(), CClonePlacementGlyph::GetLabel(), CUserFeatHandler::GetLabel(), NSnp::GetLength(), CLBLASTObjectLoader::GetLoaderName(), GetLowTrace(), CGC_Replicon::GetMoleculeLabel(), CGC_Replicon::GetMoleculeLocation(), CGC_Replicon::GetMoleculeType(), CProductStringBuilder::GetProductString(), CUser_object::GetRefGeneTrackingStatus(), CCommentItem::GetRefTrackStatus(), CSGSeqGraphJob::GetSeqtableAnnots(), CSettingsSet::GetString(), CUser_field::GetString(), CCommentItem::GetStringForBankIt(), CWriteUtil::GetStringForModelEvidence(), CCommentItem::GetStringForRefSeqGenome(), CCommentItem::GetStringForRefTrack(), CCommentItem::GetStringForTLS(), CCommentItem::GetStringForTSA(), CCommentItem::GetStringForWGS(), CConstSageData::GetTag(), CFlatGoQVal::GetTextString(), CSequenceTrack::GetTooltip(), CGuiObjectInfoSeq_align::GetToolTip(), CGuiObjectInfoPrimer::GetToolTip(), CGuiObjectInfoVariant::GetToolTip(), CGuiObjectInfoVariation::GetToolTip(), CReadUtil::GetTrackValue(), CBankITCommentField::GetVals(), CLocalIDField::GetVals(), CEditingActionDescGenomeProjectId::GetValue(), CEditingActionDescStructCommDbName::GetValue(), CSeqTableReader::Init(), CPhyloSelectionSet::InitFromUserObject(), CDiscrepancyContext::IsBGPipe(), CIntronGlyph::IsConsensus(), CLocalIDField::IsEmpty(), IsMatchingIdMissing(), CComment_rule::IsValid(), CTableImportColumn::LoadAsn(), CPhyTreeView::OnBioTreeChanged(), SSNP_Info::ParseSeq_feat(), CTabularFormatter_AssemblyInfo::Print(), CRelation::RelationFromUserObject(), CRegistryReadView::ResolveField(), RestoreModelAttributes(), RestoreModelMethod(), s_CheckTraceMateAlign(), CCleanup::s_CleanupGenomeAssembly(), CCleanup::s_CleanupStructuredComment(), s_FastaGetOriginalID(), s_FieldHasNonBlankValue(), s_GetAssemblyInfo(), s_GetBoxStyle(), s_GetEncodeValues(), s_GetModelEvidance(), s_GetMrnaProteinLink(), s_GetOriginalID(), s_GetSpliceSite(), s_HasRefSeqPGAPStructuredComment(), s_IsGnomonModel(), CMacroFunction_RemoveQual::s_RemoveFields(), s_Render_Feat_Evidence(), s_ScanRecursive(), s_SeqDescCompare(), CDBLinkField::SetVal(), CStructuredCommentField::SetVal(), sGetMethodFromModelEvidence(), CMacroFunction_ParseToStructComm::TheFunction(), CCSraAlignIterator::x_AddField(), CGuiObjectInfoSeq_align::x_AddUserObject(), x_AlmostEquals(), CGvfWriteRecord::x_AssignAttributeID(), CGvfWriteRecord::x_AssignAttributeParent(), CGvfWriteRecord::x_AssignAttributeVarType(), CBioseqContext::x_CheckForShowComments(), CSNPSearchJob::x_DoSearch(), CBamUIDataSource::x_GetBamInputs(), CDensegGraphicDataSource::x_GetCigarStr(), CBamUIDataSource::x_GetCSraInputs(), CDensegGraphicDataSource::x_GetMismatchStr(), CUser_object::x_GetRefGeneTrackingField(), CModifySeqId::x_GetRemoveOriginalIdCommand(), CBamUIDataSource::x_GetSraAccession(), CBamUIDataSource::x_GetSrzAccession(), CCommonComponentScorer::x_GetUserCompList(), CFeatureItem::x_HasMethodtRNAscanSE(), CValidError_bioseq::x_HasPGAPStructuredComment(), CBioseqIndex::x_InitDescs(), CMiscSeqTable::x_InterpretColumnProperties(), CUser_object::x_IsUnreviewedType(), CUser_object::x_IsUnverifiedType(), CLDBlockJob::x_LoadFtable(), CSGAnnotJob::x_PercentileButNotMax(), CAlignFilter::x_Query_Op(), CBioseqContext::x_SetAuthorizedAccess(), CBioseqContext::x_SetDataFromUserObjects(), CBioseqContext::x_SetFiletrackURL(), CDeflineGenerator::x_SetFlags(), CAutoDefOptions::x_SetSuppressedFeatures(), CVcfWriter::x_WriteFeatureFilter(), CVcfWriter::x_WriteFeatureInfo(), CGtfWriter::xAssignFeatureMethod(), CSrcWriter::xGetOriginalId(), and CWiggleWriter::xWriteTrackLine().

GetStrs()

const CUser_field_Base::C_Data::TStrs & CUser_field_Base::C_Data::GetStrs ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 821 of file User_field_.hpp.

Referenced by CollectUserField(), GetDBLinkIDs(), GetFieldValueAsString(), CSettingsSet::GetStringVec(), CDUpdater::reformatBioseq(), s_AddNewDBlinkValue(), s_AddNewUserField(), CCleanup::s_AddNumToUserField(), s_FieldHasNonBlankValue(), s_GatherExistingValues(), CMacroFunction_RemoveQual::s_RemoveFields(), s_ScanRecursive(), s_SetDBLinkFieldVals(), CDBLinkField::SetVal(), CEditingActionDescUserObject::SetValue(), CValidError_desc::ValidateDblink(), CSplitDblinkQuals::x_ConvertStrsToStrs(), CTracebackSearchTestFixture::x_FindUsedGis(), CGenomeProjectItem::x_GatherInfo(), CBioseqContext::x_SetFiletrackURL(), CAutoDefOptions::x_SetSuppressedFeatures(), CVcfWriter::x_WriteFeatureGenotypeData(), CVcfWriter::x_WriteInit(), and CVcfWriter::x_WriteMeta().

GetSuffix()

const CName_std_Base::TSuffix & CName_std_Base::GetSuffix ( void  ) const

inline

Get the Suffix member data.

Returns

Reference to the member data.

Definition at line 657 of file Name_std_.hpp.

References CName_std_Base::CanGetSuffix(), CName_std_Base::m_Suffix, and CSerialObject::ThrowUnassigned().

Referenced by CValidator::BadCharsInAuthor(), CName_std::ExtractSuffixFromLastName(), CPubField::GetAuthorField(), CPerson_id::GetLabel(), CAuthor::GetLabelV2(), CEditingActionDescAuthorSuffix::GetValue(), CFindASN1Dlg::ReplaceInAuthor(), CCleanup::s_CleanupNameStdBC(), CPubField::SetAuthorField(), CContactPanel::TransferDataToWindow(), CSubmitterPanel_Depr::TransferDataToWindow(), CValidError_imp::ValidateAuthorList(), and CStripAuthorSuffix::x_ApplyToCAuth().

GetTag()

const CDbtag_Base::TTag & CDbtag_Base::GetTag ( void  ) const

inline

Get the Tag member data.

Returns

Reference to the member data.

Definition at line 267 of file Dbtag_.hpp.

References CDbtag_Base::m_Tag, and CDbtag_Base::ResetTag().

Referenced by BOOST_AUTO_TEST_CASE(), CBioseqIndex::CBioseqIndex(), CGeneralToLocalId::CGeneralToLocalId(), CDbtag::Compare(), CSeq_id::ComposeOSLT(), CSeqIdGuesser::CSeqIdGuesser(), CSortableSeq_id::CSortableSeq_id(), CNewCleanup_imp::DbtagBC(), ExtractGnomonModelNum(), CSeq_id_General_Tree::FindInfo(), CSeq_id_General_Tree::FindMatch(), CSeq_id_General_Tree::FindOrCreate(), CFlatSubmitterSeqidQVal::Format(), GetAccessionAndDatabaseSource(), GetCDDPssmIdFromSeqId(), CWriteUtil::GetDbTag(), GetDirectLabel(), CValidErrorFormat::GetFeatureIdLabel(), CWGSDataLoader_Impl::GetFileInfoByGeneral(), variation::GetFocusLocusIDs(), CScoreLookup::GetGeneId(), CCSRABlobId::GetGeneralIdType(), GetGeneralOrLocal(), CAlignFormatUtil::GetGnlID(), CSeqIdGuesser::GetIdStrings(), CSeq_featHandler::GetLabel(), GetLabel(), CDbtag::GetLabel(), CGuiObjectInfoVariant::GetLinks(), GetNewGeneralProtId(), CVDBBlastUtil::GetOIDFromVDBSeqId(), CSeq_id_General_PlainInfo::GetPackedSeqId(), CScope_Impl::GetTaxId(), CScope_Impl::GetTaxIds(), GetTitle(), CGuiObjectInfoVariant::GetToolTip(), CGuiObjectInfoVariation::GetToolTip(), CGeneralIDField::GetVal(), CEditingActionBiosourceDbxref::GetValue(), CEditingActionFeatDbxref::GetValue(), CEditingActionGeneralIdTag::GetValue(), CTraceDataProxy::HasData(), CSGTraceGraphDS::HasData(), CValidator::IsValidDbxref(), CTraceDataProxy::LoadData(), CSGTraceGraphDS::LoadData(), CId1Reader::LoadSeq_idSeq_ids(), CDbtag::Match(), CSeq_id_General_Id_Info::Pack(), CSeq_id_General_Str_Info::Pack(), CSeq_id_General_Str_Info::Parse(), CSeq_id_General_Str_Info::TKey::ParseCaseVariant(), CSeq_id_General_PlainInfo::ParseCaseVariant(), SSNP_Info::ParseSeq_feat(), CTabularFormatter_SeqId::Print(), CPSGS_OSGResolveBase::ProcessResolveReply(), CFindASN1Dlg::ReplaceInDbxref(), Residue::Residue(), CWGSClient::ResolveGeneral(), s_AddTopLevelGenomicLinks(), s_AssignDbtag(), variation::CVariationUtil::s_AttachGeneIDdbxref(), s_CheckTraceMateAlign(), s_Fingerprint_Dbtag(), s_GeneralTagsMatch(), CMacroFunction_MakeBoldXrefs::s_GetBarcodeId(), s_GetBareId(), s_GetContentLabel(), NSearchFeatPanel::s_GetFeatureLabel(), variation::CVariationUtil::CVariantPropertiesIndex::s_GetGeneID(), s_GetSRASeqMetadata(), s_GetVariationDbtagLabel(), SeqDB_SimplifySeqid(), CStructuredCommentsReader::SeqIdMatchesCommentId(), CSeq_id::Set(), CDbtag::SetAsMatchingTo(), sx_GetReadId(), TestCollidingAccessionFixes(), CValidError_imp::ValidateDbxref(), CValidError_bioseq::ValidateSeqId(), CVDBBlastUtil::VDBIdType(), CFastaOstreamEx::x_AddDbxrefAttribute(), CFeatureItem::x_AddFTableDbxref(), CFeatureItem::x_AddQualProteinId(), CFeatureItem::x_AddQualsVariation(), CWriteDB_IsamIndex::x_AddStringIds(), CWriteDB_IsamIndex::x_AddTraceIds(), x_Assign(), CEditSeqId::x_CollectChangedIds(), CDeltaBlastTestFixture::x_CountNumberUniqueIds(), CSeq_id_Resolver__LRG::x_Create(), CSNPSearchJob::x_DoSearch(), CSeq_id_General_Tree::x_FindInfo(), CCommentItem::x_GatherDescInfo(), CGsdbComment::x_GatherInfo(), CFeatGlyph::x_GetFeatureId(), CSeqDBVol::x_GetHdrAsn1(), x_GetLabel_Content(), CReferenceItem::x_Init(), CGeneModelTrack::x_NeedHighlight(), CId2ReaderBase::x_ProcessGetBlobId(), CId2ReaderBase::x_ProcessGetSeqIdSeqId(), CGeneModelFeatJob::x_ProcessLandMarkFeatures(), CDeflineGenerator::x_SetFlags(), CSeq_id_General_Tree::x_Unindex(), CSingleFeatValidator::x_ValidateLocusTagGeneralMatch(), CSeq_id::x_WriteContentAsFasta(), CVcfWriter::x_WriteFeatureId(), CVcfWriter::x_WriteFeatureInfo(), and XISAGappedSeqLoc().

GetTitle()

const CName_std_Base::TTitle & CName_std_Base::GetTitle ( void  ) const

inline

Get the Title member data.

Returns

Reference to the member data.

Definition at line 704 of file Name_std_.hpp.

References CName_std_Base::CanGetTitle(), CName_std_Base::m_Title, and CSerialObject::ThrowUnassigned().

Referenced by CFindASN1Dlg::ReplaceInAuthor().

GetType()

const CUser_object_Base::TType & CUser_object_Base::GetType ( void  ) const

inline

Get the Type member data.

Returns

Reference to the member data.

Definition at line 305 of file User_object_.hpp.

References CUser_object_Base::m_Type, and CUser_object_Base::ResetType().

Referenced by CSeq_feat::AddExt(), CRmvCddFeatDbxref::apply_to(), CReorderStructuredComment::ApplyToCSeq_entry_user(), CRemoveGenomeProjectsDB::ApplyToUserObject(), CRemoveEmptyGenomeProjectsDB::ApplyToUserObject(), CRemoveBankitComment::ApplyToUserObject(), CRemoveDuplicateStructuredComment::ApplyToUserObject(), CRemoveAllStructuredComment::ApplyToUserObject(), CRemoveEmptyStructuredComment::ApplyToUserObject(), CModifyStructuredComment::ApplyToUserObject(), CBedFeatureRecord::AssignDisplayData(), CGvfWriteRecord::AssignSource(), CGvfWriteRecord::AssignType(), BOOST_AUTO_TEST_CASE(), CFlatFileTextItem::CFlatFileTextItem(), CPrimaryEdit::CPrimaryEdit(), CSequenceEditingEventHandler::DeleteSpecificStructuredComment(), descr_cmp(), CSubmissionWizard::ExtractDescriptor(), NMacroUtil::FindNcbiAutofixUserObject(), fta_dblink_has_sra(), fta_remove_cleanup_user_object(), fta_tsa_tls_comment_dblink_check(), CDUpdater::GetBlastDefline(), CUser_object::GetCategory(), CCreateSeqHistForTpa::GetCreateSeqHistFromTpaCommand(), CField_type::GetDBLinkFieldFromUserObject(), GetDBLinkIDs(), CWriteUtil::GetDescriptor(), CValidErrorFormat::GetDescriptorContent(), CEditObjectSeq_desc::GetDescriptorType(), CFlatFileViewContext::GetEditObject(), CUser_object::GetExperimentType(), CSGUtils::GetFeatFetchDepth(), CBioseq_Info::GetFeatureFetchPolicy(), CGenomeAnnotComment::GetGenomeBuildNumber(), CUserFeatHandler::GetLabel(), CStructCommentSubpanel::GetLabelsFromSeq(), CAnnotObject_Info::GetLocsTypes(), CWGSDb::GetMasterDescrType(), CSeq_annot_SplitInfo::GetName(), CUser_object::GetObjectType(), CProductStringBuilder::GetProductString(), GetSegSetDblink(), CProjectItemExtra::GetStr(), CCommentItem::GetStringForBankIt(), CCommentItem::GetStringForRefSeqGenome(), CCommentItem::GetStringForRefTrack(), CCommentItem::GetStringForTLS(), CCommentItem::GetStringForTPA(), CCommentItem::GetStringForTSA(), CCommentItem::GetStringForWGS(), CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), CSequenceTrack::GetTooltip(), CReadUtil::GetTrackValue(), CWriteUtil::GetUserObjectByType(), CBankITCommentField::GetVals(), CTextView::InitView(), CDiscrepancyContext::IsBGPipe(), CDBLinkField::IsDBLink(), CTable2AsnContext::IsDBLink(), CVariationNormalization::isFullyShifted(), IsGeneOntology(), CGenomeProjectField::IsGenomeProject(), CEditingActionDescGenomeProjectId::IsSetValue(), CEditingActionDescStructCommDbName::IsSetValue(), CComment_rule::IsStructuredComment(), CValidError_align::IsTpaAlignment(), CSeqEntrySource::IsUnverified(), isVarNormType(), isVersionsObject(), MakeCompartments(), CEditingActionDescStructCommFieldName::Modify(), CPhyTreeView::OnSomethingEdited(), SSNP_Info::ParseSeq_feat(), CChangePhyloSelectionSetCmd::PerformEdit(), CTabularFormatter_BestPlacementGroup::Print(), CTabularFormatter_AssemblyInfo::Print(), CRelation::RelationFromUserObject(), CDUpdater::RemoveBlastDefline(), CEditingActionDescGenomeProjectId::ResetValue(), CEditingActionDescStructCommDbName::ResetValue(), RestoreModelAttributes(), RestoreModelMethod(), CDemoApp::Run(), CCleanup::s_CleanupGeneOntology(), s_ExtractBlastDefline(), s_FastaGetOriginalID(), s_FindUserObjectTypeRecursive(), s_GetContentLabel(), s_GetMrnaProteinLink(), s_GetOriginalID(), s_GetUserObjectType(), s_HasTpaUserObject(), s_IdXrefsNotReciprocal(), s_IsGnomonModel(), s_IsGoodDescr(), s_IsModelEvidanceUop(), s_IsReportableStructuredComment(), s_IsTpa(), s_IsUserType(), s_PopulateUserObject(), CMacroFunction_RemoveQual::s_RemoveFields(), s_Render_Feat_Evidence(), s_SeqDescCompare(), CProjectItemExtra::SetStr(), CValidError_imp::Setup(), CEditingActionDescStructCommDbName::SetValue(), CPropagateDescriptors::ShouldStayInPlace(), CValidError_desc::ValidateDblink(), CValidError_bioseqset::ValidateNucProtSet(), CValidError_bioseq::ValidateSeqDescContext(), CValidError_desc::ValidateUser(), CValidError_bioseq::ValidateWGSMaster(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddQualsExt(), CFeatureItem::x_AddQualsRegion(), CRemoveUnreviewed::x_ApplyToUserObject(), CSubmissionWizard::x_ApplyUserDescriptorToRecord(), CGvfWriteRecord::x_AssignAttributeID(), CGvfWriteRecord::x_AssignAttributeParent(), CGvfWriteRecord::x_AssignAttributesCustom(), CGvfWriteRecord::x_AssignAttributeVarType(), CBioseqContext::x_CheckForShowComments(), CTracebackSearchTestFixture::x_FindUsedGis(), CCommentItem::x_GatherDescInfo(), CGenomeAnnotComment::x_GatherInfo(), CGenomeProjectItem::x_GatherInfo(), CPrimaryItem::x_GatherInfo(), CGenbankGatherer::x_GatherTLS(), CGenbankGatherer::x_GatherTSA(), CCommentItem::x_GatherUserObjInfo(), CGenbankGatherer::x_GatherWGS(), CAlignmentSmear::x_GetAnnotName(), CWriteDB_Impl::x_GetBioseqBinaryHeader(), CWriteDB_Impl::x_GetFastaReaderDeflines(), x_GetMolLocTypeUserObj(), x_GetTentativeName(), CCommonComponentScorer::x_GetUserCompList(), CFeatureItem::x_HasMethodtRNAscanSE(), x_HasTentativeName(), CBioseqIndex::x_InitDescs(), CSplitDblinkQuals::x_IsDblinkObj(), CGenbankFormatter::x_LocusHtmlPrefix(), CAlignFilter::x_Query_Op(), CSequenceUpdater::x_RemoveDescriptorsFromImportedProducts(), CNewCleanup_imp::x_RemoveEmptyUserObject(), CBioseqContext::x_SetAuthorizedAccess(), CBioseqContext::x_SetDataFromUserObjects(), CBioseqContext::x_SetEncode(), CBioseqContext::x_SetFiletrackURL(), CDeflineGenerator::x_SetFlags(), CBioseqContext::x_SetId(), CSeq_annot_Info::x_UpdateName(), CValidError_desc::x_ValidateStructuredComment(), CVcfWriter::x_WriteFeatureFilter(), CVcfWriter::x_WriteFeatureInfo(), CVcfWriter::x_WriteFeatureQual(), CSrcWriter::xGetOriginalId(), and CWiggleWriter::xWriteTrackLine().

GetYear()

CDate_std_Base::TYear CDate_std_Base::GetYear ( void  ) const

inline

Get the Year member data.

Returns

Copy of the member data.

Definition at line 426 of file Date_std_.hpp.

References CDate_std_Base::CanGetYear(), CDate_std_Base::m_Year, and CSerialObject::ThrowUnassigned().

Referenced by AddDay(), AddMonth(), AddYear(), CDate_std::AsCTime(), BOOST_AUTO_TEST_CASE(), CheckCollectionDate(), CDate_std::Compare(), CProceedingsPanel::CreateControls(), CProceedingsChapterPanel::CreateControls(), CPublisherPanel::CreateControls(), SCitMatch::FillFromArticle(), get_s_date(), CDate_std::GetDate(), GetDocSumLabel(), GetEmblDate(), fix_pub::PrintPub(), s_CompareDates(), s_FormatCitGen(), s_FormatYear(), CRelaxedLookupDlg::SetPubdesc(), CAddSecondary::TransferDataToWindow(), CProceedingsPanel::TransferDataToWindow(), CProceedingsChapterPanel::TransferDataToWindow(), CPublisherPanel::TransferDataToWindow(), CAuthListValidator::validate(), CValidError_imp::ValidatePubArticleNoPMID(), CId1FetchApp::WriteHistoryTable(), CValidError_imp::x_DowngradeForMissingAffil(), CSeq_id_PDB_Info::x_NormalizeDate(), CMacroFunction_SetPubStatus::x_SetStatus(), and XDateCheck().

IsAlt()

bool CInt_fuzz_Base::IsAlt ( void  ) const

inline

Check if variant Alt is selected.

Alt type is defined as 'typedef list< TSeqPos > TAlt'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 663 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::e_Alt, and CInt_fuzz_Base::m_choice.

IsBool()

bool CUser_field_Base::C_Data::IsBool ( void  ) const

inline

Check if variant Bool is selected.

Bool type is defined as 'typedef bool TBool'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 762 of file User_field_.hpp.

Referenced by CSeqUtils::GetAnnotShown(), CUser_object::GetRefGeneTrackingGenerated(), CTableImportDataSource::ImportTableParms(), CPhyloSelectionSet::InitFromUserObject(), CPhyTreeView::InitView(), CVariationNormalization::isFullyShifted(), CTableDelimiterRules::LoadAsn(), CTableImportColumn::LoadAsn(), CPhyTreeView::OnSomethingEdited(), CDemoSeqQaApp::Run(), and s_IsMatchById().

IsConsortium()

bool CPerson_id_Base::IsConsortium ( void  ) const

inline

Check if variant Consortium is selected.

Consortium type is defined as 'typedef string TConsortium'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 405 of file Person_id_.hpp.

References CPerson_id_Base::e_Consortium, and CPerson_id_Base::m_choice.

Referenced by fix_pub::ExtractConsortiums(), CPubField::GetAuthorField(), HasAuthor(), CValidError_imp::HasName(), CAuthorNamesPanel::IsAuthorEmpty(), CEditingActionDescAuthorConsortium::IsSetValue(), fix_pub::PrintPub(), CFindASN1Dlg::ReplaceInAuthor(), s_GetAuthorMatchString(), CPubField::SetAuthorField(), CReferenceItem::x_AddAuthors(), CRemoveAuthorConsortium::x_ApplyToCAuth(), and CSrcWriter::xGather().

IsDbtag()

bool CPerson_id_Base::IsDbtag ( void  ) const

inline

Check if variant Dbtag is selected.

Dbtag type is defined as 'typedef CDbtag TDbtag'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 353 of file Person_id_.hpp.

References CPerson_id_Base::e_Dbtag, and CPerson_id_Base::m_choice.

Referenced by CFindASN1Dlg::ReplaceInAuthor().

IsFields()

bool CUser_field_Base::C_Data::IsFields ( void  ) const

inline

Check if variant Fields is selected.

Fields type is defined as 'typedef vector< CRef< CUser_field > > TFields'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 895 of file User_field_.hpp.

Referenced by ClearGoTermValue(), CUser_field::DeleteField(), CFlatGoQVal::Format(), CUser_field::GetFieldRef(), CUser_object::GetRefGeneTrackingAssembly(), CUser_object::GetRefGeneTrackingIdenticalTo(), CCommentItem::GetStringForTPA(), CUser_object::CRefGeneTrackingAccession::MakeAccessionFromUserField(), CCleanup::s_CleanupGeneOntology(), s_CountAccessions(), s_GetAssemblyInfo(), s_GetModelEvidance(), CUser_field::SetFieldRef(), CRegistryFile::SetFieldToValue(), CRegistryWriteView::SetFieldToValue(), SetGoTermValue(), CRefGeneTrackLocListPanel::TransferDataFromWindow(), CFeatureItem::x_AddQualsExt(), CGuiObjectInfoSeq_align::x_AddUserObject(), CRegistryReadView::x_GetKeys(), CAutoDefOptions::x_MakeModifierList(), CSeqTableSetExt::x_SetField(), CAutoDefOptions::x_SetModifierList(), and CGff2Writer::xAssignFeatureAttributesGoMarkup().

IsId()

bool CObject_id_Base::IsId ( void  ) const

inline

Check if variant Id is selected.

Id type is defined as 'typedef int TId'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 264 of file Object_id_.hpp.

References CObject_id_Base::e_Id, and CObject_id_Base::m_choice.

Referenced by CThreeFeatRecord::AddFeature(), AddToFeatureIdColumn(), subfuse::CSubmissionCollector::AdjustLocalIds(), AdjustSingleFeature(), CApplyFBOL::apply(), CBarcodeTool::ApplyDbxrefs(), CGffRecord::AssignSeqId(), BOOST_AUTO_TEST_CASE(), CBioseqIndex::CBioseqIndex(), CGeneralToLocalId::CGeneralToLocalId(), CLocalToGeneralId::CLocalToGeneralId(), CSeq_id::ComposeOSLT(), CBlobSplitterImpl::CopySkeleton(), CRemoveSeqId::CRemoveSeqId(), CSeqIdGuesser::CSeqIdGuesser(), CSortableSeq_id::CSortableSeq_id(), CSeqDBGiList::FindId(), CSeqDBNegativeList::FindId(), CSeq_id_General_Tree::FindMatch(), CSeq_id_General_Tree::FindOrCreate(), FixFeatureIdsForUpdates(), GetAccessionAndDatabaseSource(), GetCDDPssmIdFromSeqId(), CWriteUtil::GetDbTag(), CUser_field::GetFieldRef(), GetGeneralOrLocal(), CObject_id::GetGi(), CAlignFormatUtil::GetGnlID(), GetIdField(), CSeqIdGuesser::GetIdStrings(), CSeq_featHandler::GetLabel(), CGuiObjectInfoVariant::GetLinks(), CAnnotObject_Info::GetLocsTypes(), CSeq_id_General_PlainInfo::GetPackedSeqId(), CScope_Impl::GetTaxId(), CScope_Impl::GetTaxIds(), CGuiObjectInfoVariant::GetToolTip(), CEditingActionBiosourceDbxref::GetValue(), CEditingActionFeatDbxref::GetValue(), CTraceDataProxy::HasData(), CSGTraceGraphDS::HasData(), CObject_id::IsGi(), IsLocalID(), CValidator::IsValidDbxref(), CFeatComparatorByLabel::Less(), CTraceDataProxy::LoadData(), CSGTraceGraphDS::LoadData(), Make_SeqID_String(), SChildLess::operator()(), CSeq_id_General_PlainInfo::ParseCaseVariant(), CFeaturePropagator::PropagateFeatureList(), RemapOtherProtFeats(), Residue::Residue(), variation::CVariationUtil::s_AttachGeneIDdbxref(), s_FindHighestFeatId(), CCreateGeneModelTask::s_FindHighestFeatId(), s_GeneralTagsMatch(), s_GetAlignmentTooltip(), s_GetBareId(), s_GetFeatureIdLabel(), NSearchFeatPanel::s_GetFeatureLabel(), s_IsRelated(), CFixFeatureId::s_ReassignFeatureIds(), s_UpdateFeatureId(), CIdentifiersPanel::SetIdXrefs(), sFeatureHasXref(), sInheritScores(), CValidError_imp::Validate(), CValidError_imp::ValidateDbxref(), CValidError_desc::ValidateUser(), CFastaOstreamEx::x_AddDbxrefAttribute(), CWriteDB_IsamIndex::x_AddTraceIds(), CWriteDB_Impl::x_BuildDeflinesFromBioseq(), CEditSeqId::x_CollectChangedIds(), CSeq_id_General_Tree::x_FindInfo(), CVectorScreen::x_FindLocalId(), CCommentItem::x_GatherDescInfo(), CGsdbComment::x_GatherInfo(), CFeatGlyph::x_GetFeatureId(), x_GetLabel_Content(), CFeatureGenerator::SImplementation::x_HandleCdsExceptions(), CFeatureGenerator::SImplementation::x_HandleRnaExceptions(), CMultiAlnPrinter::x_PrintFastaPlusGaps(), CId2ReaderBase::x_ProcessGetBlobId(), CId2ReaderBase::x_ProcessGetSeqIdSeqId(), CGeneModelFeatJob::x_ProcessLandMarkFeatures(), CCleanupHugeAsnReader::x_RecordFeatureId(), CDeflineGenerator::x_SetFlags(), CSeq_id_Local_Tree::x_Unindex(), CSeq_id_General_Tree::x_Unindex(), CVcfWriter::x_WriteFeatureInfo(), and CThreeFeatManager::xFindExistingRecord().

IsInt()

bool CUser_field_Base::C_Data::IsInt ( void  ) const

inline

Check if variant Int is selected.

Int type is defined as 'typedef int TInt'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 708 of file User_field_.hpp.

Referenced by CRemoveEmptyGenomeProjectsDB::ApplyToUserObject(), BOOST_AUTO_TEST_SUITE_END(), CComment_rule::CheckFieldValue(), CComment_rule::CheckGeneralField(), CFlatModelEvQVal::Format(), CSGUtils::GetFeatFetchDepth(), CSeq_annot_SplitInfo::GetName(), CFlatGoQVal::GetPubmedId(), CBlastQuerySourceBioseqSet::GetSegmentInfo(), CWriteUtil::GetStringForModelEvidence(), CGuiObjectInfoSeq_align::GetToolTip(), CEditingActionDescGenomeProjectId::GetValue(), CTableImportDataSource::ImportTableParms(), CPhyloSelectionSet::InitFromUserObject(), CPhyTreeView::InitView(), CComment_rule::IsValid(), CTableDelimiterRules::LoadAsn(), CTableImportColumn::LoadAsn(), CPhyTreeView::OnSomethingEdited(), CDemoSeqQaApp::Run(), s_CheckTraceMateAlign(), s_GetAssemblyInfo(), s_GetModelEvidance(), s_GetSegmentFlags(), s_GetUserObjectContent(), CBedWriter::WriteAnnot(), CGuiObjectInfoSeq_align::x_AddUserObject(), CCommonComponentScorer::x_GetUserCompList(), and CSeq_annot_Info::x_UpdateName().

IsInts()

bool CUser_field_Base::C_Data::IsInts ( void  ) const

inline

Check if variant Ints is selected.

Ints type is defined as 'typedef vector< int > TInts'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 835 of file User_field_.hpp.

Referenced by CPhyloSelectionSet::InitFromUserObject(), CTableDelimiterRules::LoadAsn(), and s_GetModelEvidance().

IsLim()

bool CInt_fuzz_Base::IsLim ( void  ) const

inline

Check if variant Lim is selected.

Lim type is defined as 'typedef ELim TLim'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 636 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::e_Lim, and CInt_fuzz_Base::m_choice.

Referenced by CConvertGapsBySize::apply(), CCombineAdjacentGaps::apply_impl(), CSeq_loc::ChangeToPackedInt(), CSeq_loc_Conversion::ConvertInterval(), CSeq_loc_Conversion::ConvertPoint(), FixMixLoc(), GetDeltaSeqSummary(), variation::GetFuzzSign(), GetLowHighFromSeqLoc(), CPacked_seqpnt::IsPartialStart(), CSeq_interval::IsPartialStart(), CSeq_point::IsPartialStart(), CPacked_seqpnt::IsPartialStop(), CSeq_interval::IsPartialStop(), CSeq_point::IsPartialStop(), variation::IsPureFuzzPoint(), CPacked_seqpnt::IsTruncatedStart(), CSeq_interval::IsTruncatedStart(), CSeq_point::IsTruncatedStart(), CPacked_seqpnt::IsTruncatedStop(), CSeq_interval::IsTruncatedStop(), CSeq_point::IsTruncatedStop(), SSNP_Info::ParseSeq_feat(), CSeq_loc_Conversion::ReverseFuzz(), s_CheckFuzz(), variation::CHgvsParser::s_IntWithFuzzToStr(), s_IsBetween(), s_PrintLocAsJavascriptArray(), s_RemoveBogusFuzzFromIntervals_Helper(), variation::CHgvsParser::s_SetStartOffset(), variation::CHgvsParser::s_SetStopOffset(), SeqIntPartialCheck(), CNewCleanup_imp::SeqLocBC(), variation::SwapLtGtFuzz(), CValidError_bioseq::ValidateDelta(), CSeqMap::x_Add(), CFlatSeqLoc::x_Add(), CSGFeatureJob::x_CalcIntervals(), CFeatGlyph::x_DrawFeatureBar(), CFeatGlyph::x_DrawRSites(), CSeq_loc_Mapper_Base::x_FixNonsenseFuzz(), CFlatSeqLoc::x_FuzzToDisplayed(), variation_ref::CHgvsParser::x_general_pos(), CFeatGlyph::x_GetUndefinedBp_from(), CFeatGlyph::x_GetUndefinedBp_to(), variation_ref::CHgvsParser::x_IntWithFuzzToStr(), CSeq_loc_Mapper_Base::x_NextMappingRange(), CValidError_imp::x_ReportInvalidFuzz(), and variation_ref::CHgvsParser::x_seq_ref().

IsMl()

bool CPerson_id_Base::IsMl ( void  ) const

inline

Check if variant Ml is selected.

Ml type is defined as 'typedef string TMl'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 365 of file Person_id_.hpp.

References CPerson_id_Base::e_Ml, and CPerson_id_Base::m_choice.

Referenced by CAuthor::ConvertMlToStandard(), CReferenceItem::GetAuthNames(), pub_report::GetAuthorsFromList(), pub_report::GetNameFromStdName(), HasAuthor(), CValidError_imp::HasName(), and CFindASN1Dlg::ReplaceInAuthor().

IsName()

bool CPerson_id_Base::IsName ( void  ) const

inline

Check if variant Name is selected.

Name type is defined as 'typedef CName_std TName'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 359 of file Person_id_.hpp.

References CPerson_id_Base::e_Name, and CPerson_id_Base::m_choice.

Referenced by CValidator::BadCharsInAuthor(), fix_pub::ExtractConsortiums(), CReferenceItem::GetAuthNames(), CPubField::GetAuthorField(), pub_report::GetAuthorsFromList(), GetFirstAuthor(), pub_report::GetNameFromStdName(), HasAuthor(), CValidError_imp::HasName(), CAuthorNamesPanel::IsAuthorEmpty(), CEditingActionDescAuthorFirstName::IsSetValue(), CEditingActionDescAuthorLastName::IsSetValue(), CEditingActionDescAuthorSuffix::IsSetValue(), CEditingActionDescAuthorInitials::IsSetValue(), fix_pub::PrintPub(), CFindASN1Dlg::ReplaceInAuthor(), CSubmitterNamePanel::ReportMissingFields(), IAuthorEditor::s_FixInitialsNew(), s_GetAuthorMatchString(), s_GetStringFromAuthor(), CPubField::SetAuthorField(), CEditingActionDescAuthorFirstName::SetValue(), fix_pub::TenAuthorsProcess(), CSubmitterNamePanel::TransferDataFromWindow(), CValidError_imp::ValidateSubmitBlock(), CFixAuthorInitials::x_ApplyToCAuth(), CFixAuthorCap::x_ApplyToCAuth(), CStripAuthorSuffix::x_ApplyToCAuth(), CConvertAllAuthorToConsortium::x_ApplyToCAuth(), CConvertAuthorToConsortiumWhereConstraint::x_ApplyToCAuth(), CMacroFunction_AuthorFix::x_MakeAuthorChanges(), and CSrcWriter::xGather().

IsObject()

bool CUser_field_Base::C_Data::IsObject ( void  ) const

inline

Check if variant Object is selected.

Object type is defined as 'typedef CUser_object TObject'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 809 of file User_field_.hpp.

Referenced by CWndLayoutReg::GetDefaultLayout(), CWndLayoutReg::GetLayout(), CTreeLabel::InitializeFromUserObject(), s_IsGnomonModel(), CTreeLabel::SaveToUserObject(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddQualsExt(), and CFeatureItem::x_HasMethodtRNAscanSE().

IsObjects()

bool CUser_field_Base::C_Data::IsObjects ( void  ) const

inline

Check if variant Objects is selected.

Objects type is defined as 'typedef vector< CRef< CUser_object > > TObjects'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 915 of file User_field_.hpp.

Referenced by CPhyloSelectionSetMgr::InitFromUserObject(), CFeatureItem::x_AddFTableExtQuals(), and CFeatureItem::x_AddQualsExt().

IsOs()

bool CUser_field_Base::C_Data::IsOs ( void  ) const

inline

Check if variant Os is selected.

Os type is defined as 'typedef vector< char > TOs'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 789 of file User_field_.hpp.

Referenced by CSnpBitfieldFactory::CreateBitfield(), and CSnpBitfield2::CSnpBitfield2().

IsOss()

bool CUser_field_Base::C_Data::IsOss ( void  ) const

inline

Check if variant Oss is selected.

Oss type is defined as 'typedef vector< vector< char >* > TOss'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 875 of file User_field_.hpp.

IsP_m()

bool CInt_fuzz_Base::IsP_m ( void  ) const

inline

Check if variant P_m is selected.

P_m type is defined as 'typedef TSeqPos TP_m'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 576 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::e_P_m, and CInt_fuzz_Base::m_choice.

IsPct()

bool CInt_fuzz_Base::IsPct ( void  ) const

inline

Check if variant Pct is selected.

Pct type is defined as 'typedef int TPct'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 609 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::e_Pct, and CInt_fuzz_Base::m_choice.

IsRange()

bool CInt_fuzz_Base::IsRange ( void  ) const

inline

Check if variant Range is selected.

Range type is defined as 'typedef C_Range TRange'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 603 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::e_Range, and CInt_fuzz_Base::m_choice.

Referenced by variation::ApplyOffsetFuzz(), variation::CHgvsParser::s_IntWithFuzzToStr(), variation_ref::CHgvsParser::x_abs_pos(), variation::CHgvsParser::x_abs_pos(), CFeatGlyph::x_DrawFeatureBar_sv(), CSeq_loc_Mapper_Base::x_FixNonsenseFuzz(), variation::CHgvsParser::x_general_pos(), and variation_ref::CHgvsParser::x_IntWithFuzzToStr().

IsReal()

bool CUser_field_Base::C_Data::IsReal ( void  ) const

inline

Check if variant Real is selected.

Real type is defined as 'typedef double TReal'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 735 of file User_field_.hpp.

Referenced by CPhyloSelectionSet::InitFromUserObject(), and CDemoSeqQaApp::Run().

IsReals()

bool CUser_field_Base::C_Data::IsReals ( void  ) const

inline

Check if variant Reals is selected.

Reals type is defined as 'typedef vector< double > TReals'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 855 of file User_field_.hpp.

IsSetClass()

bool CUser_object_Base::IsSetClass ( void  ) const

inline

endeavor which designed this object Check if a value has been assigned to Class data member.

Data member Class is optional; its type is defined as 'typedef string TClass'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 246 of file User_object_.hpp.

References CUser_object_Base::m_set_State.

Referenced by CRemoveDuplicateStructuredComment::ApplyToUserObject(), CUser_object_Base::CanGetClass(), CUser_object::GetCategory(), CValidErrorFormat::GetDescriptorContent(), CUserFeatHandler::GetLabel(), CBankITCommentField::GetVals(), s_GetContentLabel(), CUser_object_Base::SetClass(), and CSequenceUpdater::x_RemoveDescriptorsFromImportedProducts().

IsSetData() [1/2]

bool CUser_field_Base::IsSetData ( void  ) const

inline

Check if a value has been assigned to Data data member.

Data member Data is mandatory; its type is defined as 'typedef C_Data TData'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1012 of file User_field_.hpp.

References CUser_field_Base::m_Data, and CRef< C, Locker >::NotEmpty().

Referenced by CTableAnnotDataSource::AddSeqLoc(), CTableAnnotDataSource::AddSnpSeqLoc(), CRemoveEmptyGenomeProjectsDB::ApplyToUserObject(), CRemoveDuplicateStructuredComment::ApplyToUserObject(), CRemoveEmptyStructuredComment::ApplyToUserObject(), ClearGoTermValue(), CTableAnnotDataSource::CreateFeature(), CTableAnnotDataSource::CreateSnpFeature(), CTableAnnotDataSource::CreateSnps(), CSequenceEditingEventHandler::DeleteSpecificStructuredComment(), CTableAnnotDataSource::FindLocations(), fta_get_user_field(), GetDBLinkIDs(), GetHasFrameShift(), GetHasOrderAssignment(), GetLowTrace(), GetPrefixOrSuffixType(), CUser_object::GetRefGeneTrackingAssembly(), CUser_object::GetRefGeneTrackingGenerated(), CUser_object::GetRefGeneTrackingIdenticalTo(), CUser_object::GetRefGeneTrackingStatus(), CWriteUtil::GetStringForModelEvidence(), CCommentItem::GetStringForTLS(), CCommentItem::GetStringForTSA(), CCommentItem::GetStringForWGS(), CReadUtil::GetTrackValue(), CWriteUtil::GetUserObjectByType(), CBankITCommentField::GetVals(), CLocalIDField::GetVals(), CEditingActionDescGenomeProjectId::GetValue(), CEditingActionDescStructCommDbName::GetValue(), CLocalIDField::IsEmpty(), IsMatchingIdMissing(), CUser_object::CRefGeneTrackingAccession::MakeAccessionField(), CUser_object::CRefGeneTrackingAccession::MakeAccessionFromUserField(), CEditingActionDescUserObject::Modify(), CEditingActionDescLocalId::Modify(), CEditingActionDescComment::Modify(), s_AddNewDBlinkValue(), s_AddNewUserField(), CCleanup::s_AddNumToUserField(), CCleanup::s_CleanupGeneOntology(), CCleanup::s_CleanupGenomeAssembly(), CCleanup::s_CleanupStructuredComment(), s_CountAccessions(), s_FastaGetOriginalID(), s_FieldHasNonBlankValue(), s_GatherExistingValues(), s_GetAssemblyInfo(), s_GetEncodeValues(), s_GetModelEvidance(), s_GetMrnaProteinLink(), s_GetOriginalID(), s_HasRefSeqPGAPStructuredComment(), s_IsGnomonModel(), CMacroFunction_RemoveQual::s_RemoveFields(), s_SeqDescCompare(), SetGoTermValue(), CDBLinkField::SetVal(), CStructuredCommentField::SetVal(), CEditingActionDescUserObject::SetValue(), sGetMethodFromModelEvidence(), CMacroFunction_AddDBLink::TheFunction(), CMacroFunction_ParseToStructComm::TheFunction(), CRefGeneTrackLocListPanel::TransferDataFromWindow(), CValidError_desc::ValidateDblink(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddQualsExt(), CGuiObjectInfoSeq_align::x_AddUserObject(), x_AlmostEquals(), CBioseqContext::x_CheckForShowComments(), CCleanup::x_CleanupUserField(), CUser_object::x_GetRefGeneTrackingField(), CModifySeqId::x_GetRemoveOriginalIdCommand(), CMacroFunction_ParsedText::x_GetSpecialField(), CFeatureItem::x_HasMethodtRNAscanSE(), CValidError_bioseq::x_HasPGAPStructuredComment(), CBioseqIndex::x_InitDescs(), CUser_object::x_IsUnreviewedType(), CUser_object::x_IsUnverifiedType(), CAutoDefOptions::x_MakeModifierList(), CBioseqContext::x_SetDataFromUserObjects(), CDeflineGenerator::x_SetFlags(), CAutoDefOptions::x_SetModifierList(), CAutoDefOptions::x_SetSuppressedFeatures(), CGff2Writer::xAssignFeatureAttributesGoMarkup(), and CSrcWriter::xGetOriginalId().

IsSetData() [2/2]

bool CUser_object_Base::IsSetData ( void  ) const

inline

the object itself Check if a value has been assigned to Data data member.

Data member Data is mandatory; its type is defined as 'typedef vector< CRef< CUser_field > > TData'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 323 of file User_object_.hpp.

References CUser_object_Base::m_set_State.

Referenced by AddGoTermToList(), AddLocalIdUserObjects(), CValidErrorFormat::AddSuppression(), CChangeStructuredCommentKeyword::ApplyToCSeq_entry_user(), CReorderStructuredComment::ApplyToCSeq_entry_user(), CRemoveEmptyGenomeProjectsDB::ApplyToUserObject(), CRemoveDuplicateStructuredComment::ApplyToUserObject(), CRemoveEmptyStructuredComment::ApplyToUserObject(), CModifyStructuredComment::ApplyToUserObject(), CComment_rule::CheckGeneralStructuredComment(), CGenericStructuredCommentColumn::ClearInComment(), CDBLinkField::ClearVal(), CGenomeProjectField::ClearVal(), CStructCommFieldValuePair::ClearVal(), CStructCommDBName::ClearVal(), CStructCommFieldName::ClearVal(), CStructuredCommentField::ClearVal(), CountGoTerms(), CSubmissionWizard::ExportTemplate(), fta_dblink_has_sra(), fta_get_dblink_user_object(), fta_get_user_object(), CEditObjectSeq_desc::GetEditCommand(), GetGoTermErrors(), CStructCommentSubpanel::GetLabelsFromSeq(), CBamAlignIterator::GetMatchAlign(), CTableDataValidateParams::GetNamedBoolField(), GetProjectID(), CStructCommentFieldPanel::GetStructCommentFields(), CComment_rule::GetStructuredCommentPrefix(), CGuiObjectInfoSeq_align::GetToolTip(), CReadUtil::GetTrackValue(), CAuthorizedAccessPanel::GetUser_object(), CRefGeneTrackingPanel::GetUser_object(), CGenomeProjectField::GetVal(), CDBLinkField::GetVals(), CStructCommFieldValuePair::GetVals(), CStructCommFieldName::GetVals(), CStructuredCommentField::GetVals(), HasBadGenomeAssemblyName(), HasRepairedIDs(), IsAppropriateRule(), CDBLinkField::IsEmpty(), CGenomeProjectField::IsEmpty(), CStructCommFieldValuePair::IsEmpty(), CStructuredCommentField::IsEmpty(), CEditingActionDescUserObject::Modify(), CEditingActionDescStructCommFieldName::Modify(), CStructuredCommentPanel::OnExport(), CRepeatToFeat::operator()(), RemoveDuplicateGoTerms(), CUser_object::RemoveNamedField(), CComment_rule::ReorderFields(), CCleanup::s_CleanupDBLink(), CCleanup::s_CleanupGeneOntology(), CCleanup::s_CleanupStructuredComment(), s_GetMrnaProteinLink(), s_IdXrefsNotReciprocal(), s_IsGenomeAnnotationStart(), s_IsGnomonModel(), CMacroFunction_SetStructCommDb::s_MoveSuffixToTheEnd(), CCleanup::s_RemoveEmptyFields(), CMacroFunction_RemoveQual::s_RemoveFields(), SeqTableFromAssemblyFields(), CTableDataValidateParams::SetNamedBoolField(), CValidErrorFormat::SetSuppressionRules(), CDBLinkField::SetVal(), CStructuredCommentField::SetVal(), CGenomeProjectField::SetVal(), CValidError_desc::ValidateDblink(), CValidError_desc::ValidateUser(), CValidError_bioseq::ValidateWGSMaster(), x_AlmostEquals(), CBioseqContext::x_CheckForShowComments(), CTracebackSearchTestFixture::x_FindUsedGis(), CAutoDef::x_GetHumanSTRFeatureClauses(), CAutoDef::x_GetHumanSTRv2FeatureClauses(), CFeatureItem::x_HasMethodtRNAscanSE(), CStructuredCommentField::x_InsertFieldAtCorrectPosition(), CStructCommFieldValuePair::x_InsertFieldAtCorrectPosition(), CAutoDef::x_IsHumanSTR(), CUser_object::x_IsUnreviewedType(), CUser_object::x_IsUnverifiedType(), CSubmissionWizard::x_MergeDBLink(), CUser_object::x_RemoveUnreviewedType(), CUser_object::x_RemoveUnverifiedType(), CBioseqContext::x_SetDataFromUserObjects(), CDescrModApply::x_SetDBLinkFieldVals(), CValidError_desc::x_ValidateStructuredComment(), and CVcfReader::xAssignVcfMeta().

IsSetDay()

bool CDate_std_Base::IsSetDay ( void  ) const

inline

day of month (1-31) Check if a value has been assigned to Day data member.

Data member Day is optional; its type is defined as 'typedef int TDay'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 501 of file Date_std_.hpp.

References CDate_std_Base::m_set_State.

Referenced by CDate_std_Base::CanGetDay(), CCleanup::s_CleanupGenomeAssembly(), s_CompareDates(), s_IsDateEmpty(), CDate_std_Base::SetDay(), CAddSecondary::TransferDataToWindow(), CSeq_id_PDB_Info::x_NormalizeDate(), and XDateCheck().

IsSetDb()

bool CDbtag_Base::IsSetDb ( void  ) const

inline

name of database or system Check if a value has been assigned to Db data member.

Data member Db is mandatory; its type is defined as 'typedef string TDb'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 208 of file Dbtag_.hpp.

References CDbtag_Base::m_set_State.

Referenced by CFeatGapInfo::AdjustProteinSeq(), CDbtag_Base::CanGetDb(), CGeneralToLocalId::CGeneralToLocalId(), CSeqIdGuesser::CSeqIdGuesser(), CFlatSubmitterSeqidQVal::Format(), GetAccessionAndDatabaseSource(), CWriteUtil::GetDbTag(), CValidErrorFormat::GetFeatureIdLabel(), GetGeneralOrLocal(), CSeqIdGuesser::GetIdStrings(), CCommentItem::GetStringForTPA(), CGeneralIDField::GetVal(), CEditingActionBiosourceDbxref::IsSetValue(), CEditingActionFeatDbxref::IsSetValue(), CEditingActionFileId::IsSetValue(), CEditingActionGeneralIdDb::IsSetValue(), CEditingActionGeneralIdTag::IsSetValue(), CValidator::IsValidDbxref(), fix_pub::MergeNonPubmedPubIds(), CFindASN1Dlg::ReplaceInDbxref(), CSeq_id_General_Id_Info::Restore(), CSeq_id_General_Str_Info::Restore(), s_FindSmartSeqId(), CMacroFunction_MakeBoldXrefs::s_GetBarcodeId(), s_IsSkippableDbtag(), s_ShouldUseOriginalID(), s_SkipFeature(), CDbtag_Base::SetDb(), CValidError_imp::ValidateDbxref(), CValidError_bioseq::ValidateSeqDescContext(), CValidError_bioseq::ValidateSeqId(), CFastaOstreamEx::x_AddDbxrefAttribute(), CFeatureItem::x_AddFTableDbxref(), CFeatureItem::x_AddQualsVariation(), CEditSeqId::x_CollectChangedIds(), CRemoveGeneralId::x_CollectChangedIds(), CPrimaryItem::x_GetStrForPrimary(), CFileIDField::x_IsNCBIFILEId(), CCdregionValidator::x_ReportTranslationProblems(), CNewCleanup_imp::x_SplitDbtag(), CSingleFeatValidator::x_ValidateLocusTagGeneralMatch(), CVcfWriter::x_WriteFeatureInfo(), and XISAGappedSeqLoc().

IsSetFirst()

bool CName_std_Base::IsSetFirst ( void  ) const

inline

Check if a value has been assigned to First data member.

Data member First is optional; its type is defined as 'typedef string TFirst'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 457 of file Name_std_.hpp.

References CName_std_Base::m_set_State.

Referenced by AddContact(), NMacroUtil::ApplyAuthorNames(), NMacroUtil::ApplyFirstName(), NMacroUtil::ApplyMiddleInitial(), CValidator::BadCharsInAuthor(), BOOST_AUTO_TEST_CASE(), CName_std_Base::CanGetFirst(), FixCapitalization(), FixInitials(), GenerateInitials(), get_auth_from_toks(), CPubField::GetAuthorField(), CEditingActionDescAuthorInitials::GetValue(), CAuthorNamesPanel::IsAuthorEmpty(), CEditingActionDescAuthorFirstName::IsSetValue(), MoveMiddleToFirst(), NMacroUtil::RemoveFirstName(), NMacroUtil::RemoveMiddleInitial(), CFindASN1Dlg::ReplaceInAuthor(), CSubmitterNamePanel::ReportMissingFields(), CCleanup::s_CleanupNameStdBC(), CMacroFunction_FixPubCaps::s_FixCapitalizationInAuthor(), CCleanup::s_FixEtAl(), CMacroFunction_AuthorFix::s_FixInitials(), IAuthorEditor::s_FixInitials(), CMacroFunction_AuthorFix::s_MoveMiddleToFirst(), CSingleAuthorPanel::s_ParseInitialsFromName(), CMacroFunction_AuthorFix::s_ReverseAuthorNames(), CMacroFunction_AuthorFix::s_TruncateMiddleInitials(), CPubField::SetAuthorField(), CName_std_Base::SetFirst(), CEditingActionDescAuthorFirstName::SetValue(), CContactPanel::TransferDataToWindow(), CSubmitterPanel_Depr::TransferDataToWindow(), CValidError_imp::ValidateAuthorList(), CValidError_imp::ValidateAuthorsInPubequiv(), CValidError_imp::ValidateSubmitBlock(), CMacroFunction_AddPubAuthor::x_AddAuthor(), and CFixAuthorCap::x_ApplyToCAuth().

IsSetFull()

bool CName_std_Base::IsSetFull ( void  ) const

inline

full name eg.

"J. John Smith, Esq" Check if a value has been assigned to Full data member.

Data member Full is optional; its type is defined as 'typedef string TFull'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 551 of file Name_std_.hpp.

References CName_std_Base::m_set_State.

Referenced by CName_std_Base::CanGetFull(), CAuthor::GetLabelV2(), CFindASN1Dlg::ReplaceInAuthor(), CCleanup::s_CleanupNameStdBC(), and CName_std_Base::SetFull().

IsSetHour()

bool CDate_std_Base::IsSetHour ( void  ) const

inline

hour of day (0-23) Check if a value has been assigned to Hour data member.

Data member Hour is optional; its type is defined as 'typedef int THour'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 595 of file Date_std_.hpp.

References CDate_std_Base::m_set_State.

Referenced by CDate_std_Base::CanGetHour(), CDate_std_Base::SetHour(), CNewCleanup_imp::x_DateStdBC(), and CSeq_id_PDB_Info::x_NormalizeDate().

IsSetInitials()

bool CName_std_Base::IsSetInitials ( void  ) const

inline

first + middle initials Check if a value has been assigned to Initials data member.

Data member Initials is optional; its type is defined as 'typedef string TInitials'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 598 of file Name_std_.hpp.

References CName_std_Base::m_set_State.

Referenced by NMacroUtil::ApplyFirstName(), NMacroUtil::ApplyMiddleInitial(), CValidator::BadCharsInAuthor(), BOOST_AUTO_TEST_CASE(), CName_std_Base::CanGetInitials(), FixCapitalization(), FixInitials(), fta_fix_last_initials(), GenerateInitials(), get_auth_from_toks(), CPubField::GetAuthorField(), pub_report::GetAuthorsFromList(), GetFirstAuthor(), pub_report::GetNameFromStdName(), CAuthorNamesPanel::IsAuthorEmpty(), CEditingActionDescAuthorInitials::IsSetValue(), MoveMiddleToFirst(), fix_pub::PrintPub(), NMacroUtil::RemoveFirstName(), NMacroUtil::RemoveMiddleInitial(), CFindASN1Dlg::ReplaceInAuthor(), CCleanup::s_CleanupNameStdBC(), CCleanup::s_ExtractSuffixFromInitials(), CMacroFunction_FixPubCaps::s_FixCapitalizationInAuthor(), CCleanup::s_FixEtAl(), CMacroFunction_AuthorFix::s_FixInitials(), IAuthorEditor::s_FixInitials(), CMacroFunction_AuthorFix::s_MoveMiddleToFirst(), CSingleAuthorPanel::s_ParseInitialsFromName(), CMacroFunction_AuthorFix::s_ReverseAuthorNames(), CMacroFunction_AuthorFix::s_TruncateMiddleInitials(), CPubField::SetAuthorField(), CName_std_Base::SetInitials(), CEditingActionDescAuthorFirstName::SetValue(), fix_pub::TenAuthorsProcess(), CContactPanel::TransferDataToWindow(), CSubmitterPanel_Depr::TransferDataToWindow(), CValidError_imp::ValidateAuthorList(), and CSrcWriter::xGather().

IsSetLabel()

bool CUser_field_Base::IsSetLabel ( void  ) const

inline

field label Check if a value has been assigned to Label data member.

Data member Label is mandatory; its type is defined as 'typedef CObject_id TLabel'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 935 of file User_field_.hpp.

References CUser_field_Base::m_Label.

Referenced by CRemoveEmptyGenomeProjectsDB::ApplyToUserObject(), CComment_rule::CheckGeneralField(), CFlatModelEvQVal::Format(), CUser_object::GetCategory(), CUser_object::GetFieldRef(), GetIdField(), GetPrefixOrSuffixType(), CWriteUtil::GetStringForModelEvidence(), CReadUtil::GetTrackValue(), CBankITCommentField::GetVals(), CLocalIDField::GetVals(), CLocalIDField::IsEmpty(), CGenomeProjectField::IsGenomeProjectID(), IsMatchingIdMissing(), CCleanup::s_CleanupGeneOntology(), CCleanup::s_CleanupGenomeAssembly(), CCleanup::s_CleanupStructuredComment(), s_CountAccessions(), s_FieldHasLabel(), s_GetModelEvidance(), s_GetMrnaProteinLink(), s_IsGnomonModel(), s_IsSuppressField(), CMacroFunction_SetStructCommDb::s_MoveSuffixToTheEnd(), s_UserFieldCompare(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddGoQuals(), CFeatureItem::x_AddQualsExt(), CGuiObjectInfoSeq_align::x_AddUserObject(), x_AlmostEquals(), CBioseqContext::x_CheckForShowComments(), CCleanup::x_CleanupUserField(), CTracebackSearchTestFixture::x_FindUsedGis(), CGenomeProjectItem::x_GatherInfo(), CMacroFunction_ParsedText::x_GetSpecialField(), CFeatureItem::x_HasMethodtRNAscanSE(), CBioseqIndex::x_InitDescs(), CUser_object::x_IsUnreviewedType(), CUser_object::x_IsUnverifiedType(), CBioseqContext::x_SetDataFromUserObjects(), CNullProcess::x_UserFieldCompare(), and CGff2Writer::xAssignFeatureAttributesGoMarkup().

IsSetLast()

bool CName_std_Base::IsSetLast ( void  ) const

inline

Check if a value has been assigned to Last data member.

Data member Last is mandatory; its type is defined as 'typedef string TLast'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 410 of file Name_std_.hpp.

References CName_std_Base::m_set_State.

Referenced by AddContact(), CValidator::BadCharsInAuthor(), CName_std_Base::CanGetLast(), CName_std::ExtractSuffixFromLastName(), FixCapitalization(), fta_check_long_last_name(), fta_fix_last_initials(), get_auth_from_toks(), get_std_auth(), CPubField::GetAuthorField(), pub_report::GetAuthorsFromList(), GetFirstAuthor(), pub_report::GetNameFromStdName(), CAuthorNamesPanel::IsAuthorEmpty(), CEditingActionDescAuthorLastName::IsSetValue(), SAuthorEmpty::operator()(), fix_pub::PrintPub(), CFindASN1Dlg::ReplaceInAuthor(), CSubmitterNamePanel::ReportMissingFields(), CCleanup::s_CleanupNameStdBC(), CMacroFunction_FixPubCaps::s_FixCapitalizationInAuthor(), CCleanup::s_FixEtAl(), s_GetAuthorMatchString(), s_GetStringFromAuthor(), CMacroFunction_AuthorFix::s_ReverseAuthorNames(), CPubField::SetAuthorField(), CName_std_Base::SetLast(), fix_pub::TenAuthorsProcess(), CSubmitterNamePanel::TransferDataFromWindow(), CContactPanel::TransferDataToWindow(), CSubmitterPanel_Depr::TransferDataToWindow(), CValidError_imp::ValidateAuthorList(), CValidError_imp::ValidateAuthorsInPubequiv(), CValidError_imp::ValidateSubmitBlock(), CFixAuthorCap::x_ApplyToCAuth(), CConvertAllAuthorToConsortium::x_ApplyToCAuth(), CConvertAuthorToConsortiumWhereConstraint::x_ApplyToCAuth(), and CSrcWriter::xGather().

IsSetMax()

bool CInt_fuzz_Base::C_Range::IsSetMax ( void  ) const

inline

Check if a value has been assigned to Max data member.

Data member Max is mandatory; its type is defined as 'typedef TSeqPos TMax'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 453 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::C_Range::m_set_State.

IsSetMiddle()

bool CName_std_Base::IsSetMiddle ( void  ) const

inline

Check if a value has been assigned to Middle data member.

Data member Middle is optional; its type is defined as 'typedef string TMiddle'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 504 of file Name_std_.hpp.

References CName_std_Base::m_set_State.

Referenced by CName_std_Base::CanGetMiddle(), CFindASN1Dlg::ReplaceInAuthor(), CCleanup::s_CleanupNameStdBC(), and CName_std_Base::SetMiddle().

IsSetMin()

bool CInt_fuzz_Base::C_Range::IsSetMin ( void  ) const

inline

Check if a value has been assigned to Min data member.

Data member Min is mandatory; its type is defined as 'typedef TSeqPos TMin'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 500 of file Int_fuzz_.hpp.

IsSetMinute()

bool CDate_std_Base::IsSetMinute ( void  ) const

inline

minute of hour (0-59) Check if a value has been assigned to Minute data member.

Data member Minute is optional; its type is defined as 'typedef int TMinute'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 642 of file Date_std_.hpp.

References CDate_std_Base::m_set_State.

Referenced by CDate_std_Base::CanGetMinute(), CDate_std_Base::SetMinute(), CNewCleanup_imp::x_DateStdBC(), and CSeq_id_PDB_Info::x_NormalizeDate().

IsSetMonth()

bool CDate_std_Base::IsSetMonth ( void  ) const

inline

month (1-12) Check if a value has been assigned to Month data member.

Data member Month is optional; its type is defined as 'typedef int TMonth'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 454 of file Date_std_.hpp.

References CDate_std_Base::m_set_State.

Referenced by CDate_std_Base::CanGetMonth(), CCleanup::s_CleanupGenomeAssembly(), s_CompareDates(), s_IsDateEmpty(), pub_report::CPubData::SetDate(), pub_report::CUnpublishedReport::SetDate(), CDate_std_Base::SetMonth(), CAddSecondary::TransferDataToWindow(), CSeq_id_PDB_Info::x_NormalizeDate(), and XDateCheck().

IsSetNum()

bool CUser_field_Base::IsSetNum ( void  ) const

inline

required for strs, ints, reals, oss Check if a value has been assigned to Num data member.

Data member Num is optional; its type is defined as 'typedef int TNum'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 965 of file User_field_.hpp.

References CUser_field_Base::m_set_State.

Referenced by CUser_field_Base::CanGetNum(), CEditingActionDescUserObject::Modify(), SSNP_Info::ParseSeq_feat(), CCleanup::s_AddNumToUserField(), s_GetModelEvidance(), and CUser_field_Base::SetNum().

IsSetSeason()

bool CDate_std_Base::IsSetSeason ( void  ) const

inline

for "spring", "may-june", etc Check if a value has been assigned to Season data member.

Data member Season is optional; its type is defined as 'typedef string TSeason'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 548 of file Date_std_.hpp.

References CDate_std_Base::m_set_State.

Referenced by CDate_std_Base::CanGetSeason(), s_CompareDates(), CDate_std_Base::SetSeason(), and CSeq_id_PDB_Info::x_NormalizeDate().

IsSetSecond()

bool CDate_std_Base::IsSetSecond ( void  ) const

inline

second of minute (0-59) Check if a value has been assigned to Second data member.

Data member Second is optional; its type is defined as 'typedef int TSecond'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 689 of file Date_std_.hpp.

References CDate_std_Base::m_set_State.

Referenced by CDate_std_Base::CanGetSecond(), CDate_std_Base::SetSecond(), CNewCleanup_imp::x_DateStdBC(), and CSeq_id_PDB_Info::x_NormalizeDate().

IsSetSuffix()

bool CName_std_Base::IsSetSuffix ( void  ) const

inline

Jr, Sr, III Check if a value has been assigned to Suffix data member.

Data member Suffix is optional; its type is defined as 'typedef string TSuffix'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 645 of file Name_std_.hpp.

References CName_std_Base::m_set_State.

Referenced by CValidator::BadCharsInAuthor(), CName_std_Base::CanGetSuffix(), CName_std::ExtractSuffixFromLastName(), fta_fix_affil(), get_auth_from_toks(), CPubField::GetAuthorField(), CEditingActionDescAuthorSuffix::IsSetValue(), CFindASN1Dlg::ReplaceInAuthor(), CCleanup::s_CleanupNameStdBC(), CCleanup::s_ExtractSuffixFromInitials(), CPubField::SetAuthorField(), CName_std_Base::SetSuffix(), CContactPanel::TransferDataToWindow(), CSubmitterPanel_Depr::TransferDataToWindow(), CValidError_imp::ValidateAuthorList(), CStripAuthorSuffix::x_ApplyToCAuth(), and CMacroFunction_AuthorFix::x_MakeAuthorChanges().

IsSetTag()

bool CDbtag_Base::IsSetTag ( void  ) const

inline

appropriate tag Check if a value has been assigned to Tag data member.

Data member Tag is mandatory; its type is defined as 'typedef CObject_id TTag'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 255 of file Dbtag_.hpp.

References CDbtag_Base::m_Tag.

Referenced by CBioseqIndex::CBioseqIndex(), CGeneralToLocalId::CGeneralToLocalId(), CLocalToGeneralId::CLocalToGeneralId(), CSeqIdGuesser::CSeqIdGuesser(), CFlatSubmitterSeqidQVal::Format(), GetAccessionAndDatabaseSource(), CWriteUtil::GetDbTag(), CValidErrorFormat::GetFeatureIdLabel(), GetGeneralOrLocal(), CSeqIdGuesser::GetIdStrings(), CGeneralIDField::GetVal(), CEditingActionBiosourceDbxref::IsSetValue(), CEditingActionFeatDbxref::IsSetValue(), CEditingActionGeneralIdTag::IsSetValue(), CValidator::IsValidDbxref(), CFindASN1Dlg::ReplaceInDbxref(), s_GeneralTagsMatch(), CMacroFunction_MakeBoldXrefs::s_GetBarcodeId(), CValidError_imp::ValidateDbxref(), CValidError_bioseq::ValidateSeqId(), CFastaOstreamEx::x_AddDbxrefAttribute(), CFeatureItem::x_AddFTableDbxref(), CFeatureItem::x_AddQualsVariation(), CEditSeqId::x_CollectChangedIds(), CDeltaBlastTestFixture::x_CountNumberUniqueIds(), CGsdbComment::x_GatherInfo(), CReferenceItem::x_Init(), CGeneModelTrack::x_NeedHighlight(), CDeflineGenerator::x_SetFlags(), CNewCleanup_imp::x_SplitDbtag(), CSingleFeatValidator::x_ValidateLocusTagGeneralMatch(), CVcfWriter::x_WriteFeatureInfo(), and XISAGappedSeqLoc().

IsSetTitle()

bool CName_std_Base::IsSetTitle ( void  ) const

inline

Dr., Sister, etc Check if a value has been assigned to Title data member.

Data member Title is optional; its type is defined as 'typedef string TTitle'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 692 of file Name_std_.hpp.

References CName_std_Base::m_set_State.

Referenced by CName_std_Base::CanGetTitle(), CFindASN1Dlg::ReplaceInAuthor(), CCleanup::s_CleanupNameStdBC(), and CName_std_Base::SetTitle().

IsSetType()

bool CUser_object_Base::IsSetType ( void  ) const

inline

type of object within class Check if a value has been assigned to Type data member.

Data member Type is mandatory; its type is defined as 'typedef CObject_id TType'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 293 of file User_object_.hpp.

References CUser_object_Base::m_Type.

Referenced by CSeq_feat::AddExt(), CReorderStructuredComment::ApplyToCSeq_entry_user(), CRemoveGenomeProjectsDB::ApplyToUserObject(), CRemoveEmptyGenomeProjectsDB::ApplyToUserObject(), CRemoveBankitComment::ApplyToUserObject(), CRemoveDuplicateStructuredComment::ApplyToUserObject(), CRemoveAllStructuredComment::ApplyToUserObject(), CRemoveEmptyStructuredComment::ApplyToUserObject(), CModifyStructuredComment::ApplyToUserObject(), CBedFeatureRecord::AssignDisplayData(), CGvfWriteRecord::AssignSource(), CGvfWriteRecord::AssignType(), CPrimaryEdit::CPrimaryEdit(), CSequenceEditingEventHandler::DeleteSpecificStructuredComment(), descr_cmp(), CSubmissionWizard::ExtractDescriptor(), NMacroUtil::FindNcbiAutofixUserObject(), fta_dblink_has_sra(), fta_get_project_user_object(), fta_remove_cleanup_user_object(), fta_tsa_tls_comment_dblink_check(), CCreateSeqHistForTpa::GetCreateSeqHistFromTpaCommand(), GetDBLinkIDs(), CValidErrorFormat::GetDescriptorContent(), CEditObjectSeq_desc::GetDescriptorType(), CGenomeAnnotComment::GetGenomeBuildNumber(), CStructCommentSubpanel::GetLabelsFromSeq(), CUser_object::GetObjectType(), CCommentItem::GetStringForRefTrack(), CCommentItem::GetStringForTLS(), CCommentItem::GetStringForTSA(), CCommentItem::GetStringForWGS(), CReadUtil::GetTrackValue(), CWriteUtil::GetUserObjectByType(), CDBLinkField::IsDBLink(), CTable2AsnContext::IsDBLink(), IsGeneOntology(), CGenomeProjectField::IsGenomeProject(), CEditingActionDescGenomeProjectId::IsSetValue(), CEditingActionDescStructCommDbName::IsSetValue(), CComment_rule::IsStructuredComment(), CValidError_align::IsTpaAlignment(), CSeqEntrySource::IsUnverified(), isVersionsObject(), CEditingActionDescStructCommFieldName::Modify(), CPhyTreeView::OnSomethingEdited(), CChangePhyloSelectionSetCmd::PerformEdit(), CEditingActionDescGenomeProjectId::ResetValue(), CEditingActionDescStructCommDbName::ResetValue(), CCleanup::s_CleanupGeneOntology(), s_FastaGetOriginalID(), s_GetMrnaProteinLink(), s_GetOriginalID(), s_IdXrefsNotReciprocal(), s_IsGnomonModel(), s_IsReportableStructuredComment(), s_IsTpa(), s_IsUserType(), s_Render_Feat_Evidence(), CEditingActionDescStructCommDbName::SetValue(), CPropagateDescriptors::ShouldStayInPlace(), CValidError_desc::ValidateDblink(), CValidError_bioseqset::ValidateNucProtSet(), CValidError_bioseq::ValidateSeqDescContext(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddQualsExt(), CFeatureItem::x_AddQualsRegion(), CRemoveUnreviewed::x_ApplyToUserObject(), CSubmissionWizard::x_ApplyUserDescriptorToRecord(), CGvfWriteRecord::x_AssignAttributeID(), CGvfWriteRecord::x_AssignAttributeParent(), CGvfWriteRecord::x_AssignAttributesCustom(), CGvfWriteRecord::x_AssignAttributeVarType(), CBioseqContext::x_CheckForShowComments(), CTracebackSearchTestFixture::x_FindUsedGis(), CGenomeAnnotComment::x_GatherInfo(), CFeatureItem::x_HasMethodtRNAscanSE(), CBioseqIndex::x_InitDescs(), CGenbankFormatter::x_LocusHtmlPrefix(), CSequenceUpdater::x_RemoveDescriptorsFromImportedProducts(), CBioseqContext::x_SetDataFromUserObjects(), CBioseqContext::x_SetEncode(), CValidError_desc::x_ValidateStructuredComment(), CVcfWriter::x_WriteFeatureFilter(), CVcfWriter::x_WriteFeatureInfo(), CVcfWriter::x_WriteFeatureQual(), and CSrcWriter::xGetOriginalId().

IsSetYear()

bool CDate_std_Base::IsSetYear ( void  ) const

inline

full year (including 1900) Check if a value has been assigned to Year data member.

Data member Year is mandatory; its type is defined as 'typedef int TYear'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 407 of file Date_std_.hpp.

References CDate_std_Base::m_set_State.

Referenced by CDate_std_Base::CanGetYear(), pub_report::CheckDate(), CProceedingsPanel::CreateControls(), CProceedingsChapterPanel::CreateControls(), CPublisherPanel::CreateControls(), GetDateString(), GetDocSumLabel(), fix_pub::PrintPub(), CCleanup::s_CleanupGenomeAssembly(), s_CompareDates(), s_FormatCitGen(), s_FormatYear(), s_IsDateEmpty(), pub_report::CPubData::SetDate(), pub_report::CUnpublishedReport::SetDate(), CRelaxedLookupDlg::SetPubdesc(), CDate_std_Base::SetYear(), CAddSecondary::TransferDataToWindow(), CProceedingsPanel::TransferDataToWindow(), CProceedingsChapterPanel::TransferDataToWindow(), CPublisherPanel::TransferDataToWindow(), CValidError_imp::ValidatePubArticleNoPMID(), CValidError_imp::x_DowngradeForMissingAffil(), and XDateCheck().

IsStd()

bool CDate_Base::IsStd ( void  ) const

inline

Check if variant Std is selected.

Std type is defined as 'typedef CDate_std TStd'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 320 of file Date_.hpp.

References CDate_Base::e_Std, and CDate_Base::m_choice.

Referenced by CheckDate(), pub_report::CheckDate(), pub_report::CollectDataArt(), pub_report::CollectDataGen(), CDate::Compare(), CProceedingsPanel::CreateControls(), CProceedingsChapterPanel::CreateControls(), CPublisherPanel::CreateControls(), SCitMatch::FillFromArticle(), GetDateString(), GetDocSumLabel(), ICitationBase::GetParenthesizedYear(), CApplyPubQualTreeItemData::GetVariables(), IsDateInPast(), CSeq_id_PDB_Info::Normalize(), fix_pub::PrintPub(), CCleanup::s_CleanupGenomeAssembly(), s_CompareDates(), s_FormatCitGen(), s_FormatYear(), s_IsDateEmpty(), CRelaxedLookupDlg::SetPubdesc(), pub_report::CSkipPubUnpublishedHook::SkipObject(), CAddSecondary::TransferDataToWindow(), CProceedingsPanel::TransferDataToWindow(), CProceedingsChapterPanel::TransferDataToWindow(), CPublisherPanel::TransferDataToWindow(), CValidError_imp::ValidatePubArticleNoPMID(), CValidError_imp::x_DowngradeForMissingAffil(), CLocusItem::x_GetDateForBioseq(), and CVcfWriter::x_WriteMetaCreateNew().

IsStr() [1/4]

bool CDate_Base::IsStr ( void  ) const

inline

Check if variant Str is selected.

Str type is defined as 'typedef string TStr'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 300 of file Date_.hpp.

References CDate_Base::e_Str, and CDate_Base::m_choice.

Referenced by CheckDate(), CDate::Compare(), GetDateString(), ICitationBase::GetParenthesizedYear(), s_CompareDates(), s_FormatCitGen(), s_FormatYear(), and CValidError_imp::ValidatePubArticleNoPMID().

IsStr() [2/4]

bool CObject_id_Base::IsStr ( void  ) const

inline

Check if variant Str is selected.

Str type is defined as 'typedef string TStr'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 291 of file Object_id_.hpp.

References CObject_id_Base::e_Str, and CObject_id_Base::m_choice.

Referenced by CSeq_feat::AddExt(), CApplyFBOL::apply(), CRmvCddFeatDbxref::apply_to(), CBarcodeTool::ApplyDbxrefs(), CReorderStructuredComment::ApplyToCSeq_entry_user(), CRemoveGenomeProjectsDB::ApplyToUserObject(), CRemoveEmptyGenomeProjectsDB::ApplyToUserObject(), CRemoveBankitComment::ApplyToUserObject(), CRemoveDuplicateStructuredComment::ApplyToUserObject(), CRemoveAllStructuredComment::ApplyToUserObject(), CRemoveEmptyStructuredComment::ApplyToUserObject(), CModifyStructuredComment::ApplyToUserObject(), CBedFeatureRecord::AssignDisplayData(), CGvfWriteRecord::AssignSource(), CGvfWriteRecord::AssignType(), BOOST_AUTO_TEST_CASE(), CBioseqIndex::CBioseqIndex(), CFlatFileTextItem::CFlatFileTextItem(), CGeneralToLocalId::CGeneralToLocalId(), CComment_rule::CheckGeneralField(), CLocalToGeneralId::CLocalToGeneralId(), CSeq_id::ComposeOSLT(), CPrimaryEdit::CPrimaryEdit(), CRemoveSeqId::CRemoveSeqId(), CNewCleanup_imp::DbtagBC(), CUser_field::DeleteField(), CSequenceEditingEventHandler::DeleteSpecificStructuredComment(), descr_cmp(), CSeq_align::FindExt(), CSeq_feat::FindExt(), NMacroUtil::FindNcbiAutofixUserObject(), CSeq_id_Local_Tree::FindOrCreate(), CSeq_id_General_Tree::FindOrCreate(), CFlatSubmitterSeqidQVal::Format(), CFlatModelEvQVal::Format(), fta_build_ena_user_object(), fta_dblink_has_sra(), fta_get_project_user_object(), fta_remove_cleanup_user_object(), fta_sort_biosource(), fta_tsa_tls_comment_dblink_check(), GetAccessionAndDatabaseSource(), CDUpdater::GetBlastDefline(), CUser_object::GetCategory(), CCreateSeqHistForTpa::GetCreateSeqHistFromTpaCommand(), CField_type::GetDBLinkFieldFromUserObject(), GetDBLinkIDs(), CWriteUtil::GetDbTag(), CValidErrorFormat::GetDescriptorContent(), CEditObjectSeq_desc::GetDescriptorType(), GetDirectLabel(), CFlatFileViewContext::GetEditObject(), CUser_object::GetExperimentType(), CSGUtils::GetFeatFetchDepth(), CBioseq_Info::GetFeatureFetchPolicy(), CUser_field::GetFieldRef(), CUser_object::GetFieldRef(), CWGSDataLoader_Impl::GetFileInfoByGeneral(), CCSRABlobId::GetGeneralIdType(), CGenomeAnnotComment::GetGenomeBuildNumber(), CSeq_featHandler::GetLabel(), GetLabel(), CStructCommentSubpanel::GetLabelsFromSeq(), CGuiObjectInfoVariant::GetLinks(), CAnnotObject_Info::GetLocsTypes(), CWGSDb::GetMasterDescrType(), CVDBBlastUtil::GetOIDFromVDBSeqId(), GetPrefixOrSuffixType(), CProductStringBuilder::GetProductString(), CReadSharedObjectIdHookBase::GetSharedObject_id(), CCommentItem::GetStringForBankIt(), CWriteUtil::GetStringForModelEvidence(), CCommentItem::GetStringForRefTrack(), CCommentItem::GetStringForTLS(), CCommentItem::GetStringForTPA(), CCommentItem::GetStringForTSA(), CCommentItem::GetStringForWGS(), CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), GetTitle(), CSequenceTrack::GetTooltip(), CGuiObjectInfoVariant::GetToolTip(), CReadUtil::GetTrackValue(), CWriteUtil::GetUserObjectByType(), CBankITCommentField::GetVals(), CLocalIDField::GetVals(), CEditingActionBiosourceDbxref::GetValue(), CEditingActionFeatDbxref::GetValue(), CTextView::InitView(), IsConsensus(), CDBLinkField::IsDBLink(), CTable2AsnContext::IsDBLink(), CLocalIDField::IsEmpty(), CVariationNormalization::isFullyShifted(), IsGeneOntology(), CGenomeProjectField::IsGenomeProject(), CGenomeProjectField::IsGenomeProjectID(), IsLocalID(), IsMatchingIdMissing(), CEditingActionDescGenomeProjectId::IsSetValue(), CEditingActionDescStructCommDbName::IsSetValue(), CComment_rule::IsStructuredComment(), CValidError_align::IsTpaAlignment(), CSeqEntrySource::IsUnverified(), CValidator::IsValidDbxref(), isVarNormType(), isVersionsObject(), CFeatComparatorByLabel::Less(), CLoadStructComments::LoadWithAccessions(), Make_SeqID_String(), MakeCompartments(), CEditingActionDescUserObject::Modify(), CEditingActionDescStructCommFieldName::Modify(), CEditingActionDescLocalId::Modify(), CEditingActionDescComment::Modify(), OjectIdsAreEqual(), CSeqIdValidate::operator()(), SChildLess::operator()(), CSeq_id_Local_Info::ParseCaseVariant(), CTabularFormatter_BestPlacementGroup::Print(), CTabularFormatter_AssemblyInfo::Print(), CDUpdater::RemoveBlastDefline(), CSeq_feat::RemoveExt(), CFindASN1Dlg::ReplaceInDbxref(), CFindASN1Dlg::ReplaceInSubmit(), CEditingActionDescGenomeProjectId::ResetValue(), CEditingActionDescStructCommDbName::ResetValue(), CWGSClient::ResolveGeneral(), CSeq_id_General_Str_Info::Restore(), CDemoApp::Run(), s_AssignObject_id(), CCleanup::s_CleanupGeneOntology(), CCleanup::s_CleanupGenomeAssembly(), CCleanup::s_CleanupStructuredComment(), s_CountAccessions(), s_ExtractBlastDefline(), s_FastaGetOriginalID(), s_FieldHasLabel(), s_FindLocalId(), s_GeneralTagsMatch(), s_GetAssemblyInfo(), s_GetBareId(), s_GetContentLabel(), s_GetFeatureIdLabel(), s_GetIdLabel(), s_GetLabel(), s_GetModelEvidance(), s_GetMrnaProteinLink(), s_GetOriginalID(), s_GetSRASeqMetadata(), s_GetUserObjectContent(), s_GetUserObjectType(), s_HasTpaUserObject(), s_IdXrefsNotReciprocal(), s_IsGnomonModel(), s_IsModelEvidanceUop(), s_IsReportableStructuredComment(), s_IsSuppressField(), s_IsTpa(), s_IsUserType(), CMacroFunction_SetStructCommDb::s_MoveSuffixToTheEnd(), s_PopulateUserObject(), CMacroFunction_RemoveQual::s_RemoveFields(), s_Render_Feat_Evidence(), s_ReplaceLocalId(), s_SeqDescCompare(), SeqDB_SimplifySeqid(), SeqIdMatchesMaster(), CSeq_id::Set(), CUser_object::SetFieldRef(), CIdentifiersPanel::SetIdXrefs(), CGffAlignmentRecord::SetScore(), CGffBaseRecord::SetScore(), CValidError_imp::Setup(), CEditingActionDescStructCommDbName::SetValue(), sFeatureHasXref(), sGetFeatMapKey(), CPropagateDescriptors::ShouldStayInPlace(), sInheritScores(), sPrepareSeqAlign(), sx_MakeUniqueId(), CMacroFunction_AddDBLink::TheFunction(), CMacroFunction_ParseToStructComm::TheFunction(), CSequencingTechnologyPanel::TransferDataToWindow(), CStructuredCommentPanel::TransferDataToWindow(), CValidError_desc::ValidateDblink(), CValidError_imp::ValidateDbxref(), CValidError_bioseqset::ValidateNucProtSet(), CValidError_annot::ValidateSeqAnnot(), CValidError_bioseq::ValidateSeqDescContext(), CValidError_bioseq::ValidateSeqId(), CValidError_desc::ValidateUser(), CValidError_bioseq::ValidateWGSMaster(), CVDBBlastUtil::VDBIdType(), CFeatureItem::x_AddFTableExtQuals(), CFeatureItem::x_AddGoQuals(), CWriteDB_IsamIndex::x_AddLocal(), CFeatureTableReader_Imp::x_AddQualifierToImp(), CFeatureItem::x_AddQualsExt(), CFeatureItem::x_AddQualsRegion(), CFeatureItem::x_AddQualsVariation(), CWriteDB_IsamIndex::x_AddStringIds(), CGuiObjectInfoSeq_align::x_AddUserObject(), CAlnTableDS::x_AdjustColumns(), x_AlmostEquals(), CRemoveUnreviewed::x_ApplyToUserObject(), CGvfWriteRecord::x_AssignAttributeID(), CGvfWriteRecord::x_AssignAttributeParent(), CGvfWriteRecord::x_AssignAttributesCustom(), CGvfWriteRecord::x_AssignAttributeVarType(), CBioseqContext::x_CheckForShowComments(), CCleanup::x_CleanupUserField(), CEditSeqId::x_CollectChangedIds(), CSeq_id_Resolver__LRG::x_Create(), CSeq_id_General_Tree::x_FindInfo(), CSeq_id_Local_Tree::x_FindInfo(), CVectorScreen::x_FindLocalId(), CTracebackSearchTestFixture::x_FindUsedGis(), CGencollIdMapper::x_FixImperfectId(), CDBSourceItem::x_FormatDBSourceID(), CCommentItem::x_GatherDescInfo(), CGenomeAnnotComment::x_GatherInfo(), CGenomeProjectItem::x_GatherInfo(), CPrimaryItem::x_GatherInfo(), CGenbankGatherer::x_GatherTLS(), CGenbankGatherer::x_GatherTSA(), CGenbankGatherer::x_GatherWGS(), CWriteDB_Impl::x_GetBioseqBinaryHeader(), CWriteDB_Impl::x_GetFastaReaderDeflines(), CFeatGlyph::x_GetFeatureId(), x_GetLabel_Content(), x_GetMolLocTypeUserObj(), CModifySeqId::x_GetRemoveOriginalIdCommand(), CMacroFunction_ParsedText::x_GetSpecialField(), CCommonComponentScorer::x_GetUserCompList(), CViewGraphic::x_GetViewSettingsFromParams(), CFeatureItem::x_HasMethodtRNAscanSE(), CReferenceItem::x_Init(), CBioseqIndex::x_InitDescs(), CSplitDblinkQuals::x_IsDblinkObj(), CUser_object::x_IsUnreviewedType(), CUser_object::x_IsUnverifiedType(), CGenbankFormatter::x_LocusHtmlPrefix(), CId2ReaderBase::x_ProcessGetSeqIdSeqId(), CAlignFilter::x_Query_Op(), CSequenceUpdater::x_RemoveDescriptorsFromImportedProducts(), CBioseqContext::x_SetDataFromUserObjects(), CBioseqContext::x_SetEncode(), CDeflineGenerator::x_SetFlags(), CBioseqContext::x_SetId(), CSeq_id_Local_Tree::x_Unindex(), CSeq_id_General_Tree::x_Unindex(), CSingleFeatValidator::x_ValidateLocusTagGeneralMatch(), CValidError_desc::x_ValidateStructuredComment(), CVcfWriter::x_WriteFeatureFilter(), CVcfWriter::x_WriteFeatureId(), CVcfWriter::x_WriteFeatureInfo(), CVcfWriter::x_WriteFeatureQual(), CGff3FlybaseWriter::xAssignAlignmentDensegScores(), CGff3FlybaseWriter::xAssignAlignmentSplicedScores(), CGff2Writer::xAssignFeatureAttributesGoMarkup(), CSrcWriter::xGetOriginalId(), CFeatTableEdit::xRenameFeatureId(), CWiggleWriter::xWriteSingleGraphFixedStep(), and CWiggleWriter::xWriteTrackLine().

IsStr() [3/4]

bool CPerson_id_Base::IsStr ( void  ) const

inline

Check if variant Str is selected.

Str type is defined as 'typedef string TStr'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 385 of file Person_id_.hpp.

References CPerson_id_Base::e_Str, and CPerson_id_Base::m_choice.

Referenced by CReferenceItem::GetAuthNames(), pub_report::GetAuthorsFromList(), pub_report::GetNameFromStdName(), HasAuthor(), CValidError_imp::HasName(), CFindASN1Dlg::ReplaceInAuthor(), and s_GetAuthorMatchString().

IsStr() [4/4]

bool CUser_field_Base::C_Data::IsStr ( void  ) const

inline

Check if variant Str is selected.

Str type is defined as 'typedef CStringUTF8 TStr'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 688 of file User_field_.hpp.

Referenced by CTableAnnotDataSource::AddSeqLoc(), CTableAnnotDataSource::AddSnpSeqLoc(), CRemoveDuplicateStructuredComment::ApplyToUserObject(), CComment_rule::CheckFieldValue(), CComment_rule::CheckGeneralField(), CTableAnnotDataSource::CreateFeature(), CTableAnnotDataSource::CreateSnpFeature(), CTableAnnotDataSource::CreateSnps(), CSequenceEditingEventHandler::DeleteSpecificStructuredComment(), CTableAnnotDataSource::FindLocations(), CFlatModelEvQVal::Format(), CRegistryFile::FromConfigFile(), CBioseq_Info::GetFeatureFetchPolicy(), GetFieldValueAsString(), CGenomeAnnotComment::GetGenomeBuildNumber(), GetHasFrameShift(), GetHasOrderAssignment(), GetLowTrace(), GetPrefixOrSuffixType(), CProductStringBuilder::GetProductString(), CUser_object::GetRefGeneTrackingStatus(), CCommentItem::GetRefTrackStatus(), CSGSeqGraphJob::GetSeqtableAnnots(), CCommentItem::GetStringForBankIt(), CCommentItem::GetStringForRefTrack(), CCommentItem::GetStringForTLS(), CCommentItem::GetStringForTSA(), CCommentItem::GetStringForWGS(), CFlatGoQVal::GetTextString(), CSequenceTrack::GetTooltip(), CGuiObjectInfoSeq_align::GetToolTip(), CGuiObjectInfoVariation::GetToolTip(), CReadUtil::GetTrackValue(), CBankITCommentField::GetVals(), CLocalIDField::GetVals(), CEditingActionDescGenomeProjectId::GetValue(), CEditingActionDescStructCommDbName::GetValue(), CSeqTableReader::Init(), CPhyloSelectionSet::InitFromUserObject(), CIntronGlyph::IsConsensus(), CLocalIDField::IsEmpty(), IsMatchingIdMissing(), CComment_rule::IsValid(), CTableImportColumn::LoadAsn(), CTestApplication::LoadTable(), CPhyTreeView::OnBioTreeChanged(), CPhyTreeView::OnSomethingEdited(), SSNP_Info::ParseSeq_feat(), CRegistryReadView::ResolveField(), RestoreModelAttributes(), s_CheckTraceMateAlign(), CCleanup::s_CleanupGeneOntology(), CCleanup::s_CleanupGenomeAssembly(), CCleanup::s_CleanupStructuredComment(), s_FastaGetOriginalID(), s_FieldHasNonBlankValue(), s_GetAssemblyInfo(), s_GetEncodeValues(), s_GetModelEvidance(), s_GetMrnaProteinLink(), s_GetOriginalID(), s_GetSpliceSite(), s_HasRefSeqPGAPStructuredComment(), s_IsGnomonModel(), CMacroFunction_RemoveQual::s_RemoveFields(), s_SeqDescCompare(), CDBLinkField::SetVal(), CStructuredCommentField::SetVal(), sGetMethodFromModelEvidence(), CMacroFunction_ParseToStructComm::TheFunction(), CGuiObjectInfoSeq_align::x_AddUserObject(), x_AlmostEquals(), CBioseqContext::x_CheckForShowComments(), CSNPSearchJob::x_DoSearch(), CDensegGraphicDataSource::x_GetCigarStr(), CDensegGraphicDataSource::x_GetMismatchStr(), CUser_object::x_GetRefGeneTrackingField(), CModifySeqId::x_GetRemoveOriginalIdCommand(), CMacroFunction_ParsedText::x_GetSpecialField(), CCommonComponentScorer::x_GetUserCompList(), CFeatureItem::x_HasMethodtRNAscanSE(), CValidError_bioseq::x_HasPGAPStructuredComment(), CBioseqIndex::x_InitDescs(), CUser_object::x_IsUnreviewedType(), CUser_object::x_IsUnverifiedType(), CSGAnnotJob::x_PercentileButNotMax(), CBioseqContext::x_SetDataFromUserObjects(), CDeflineGenerator::x_SetFlags(), CAutoDefOptions::x_SetSuppressedFeatures(), and CSrcWriter::xGetOriginalId().

IsStrs()

bool CUser_field_Base::C_Data::IsStrs ( void  ) const

inline

Check if variant Strs is selected.

Strs type is defined as 'typedef vector< CStringUTF8 > TStrs'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 815 of file User_field_.hpp.

Referenced by GetDBLinkIDs(), GetFieldValueAsString(), s_AddNewDBlinkValue(), s_AddNewUserField(), s_FieldHasNonBlankValue(), s_GatherExistingValues(), CMacroFunction_RemoveQual::s_RemoveFields(), CDBLinkField::SetVal(), CEditingActionDescUserObject::SetValue(), CMacroFunction_AddDBLink::TheFunction(), CValidError_desc::ValidateDblink(), and CAutoDefOptions::x_SetSuppressedFeatures().

operator=() [1/11]

C_Data& CUser_field_Base::C_Data::operator= ( const C_Data &  )

private

operator=() [2/11]

C_Range& CInt_fuzz_Base::C_Range::operator= ( const C_Range &  )

private

operator=() [3/11]

CDate_Base& CDate_Base::operator= ( const CDate_Base &  )

private

operator=() [4/11]

CDate_std_Base& CDate_std_Base::operator= ( const CDate_std_Base &  )

private

operator=() [5/11]

CDbtag_Base& CDbtag_Base::operator= ( const CDbtag_Base &  )

private

operator=() [6/11]

CInt_fuzz_Base& CInt_fuzz_Base::operator= ( const CInt_fuzz_Base &  )

private

operator=() [7/11]

CName_std_Base& CName_std_Base::operator= ( const CName_std_Base &  )

private

operator=() [8/11]

CObject_id_Base& CObject_id_Base::operator= ( const CObject_id_Base &  )

private

operator=() [9/11]

CPerson_id_Base& CPerson_id_Base::operator= ( const CPerson_id_Base &  )

private

operator=() [10/11]

CUser_field_Base& CUser_field_Base::operator= ( const CUser_field_Base &  )

private

operator=() [11/11]

CUser_object_Base& CUser_object_Base::operator= ( const CUser_object_Base &  )

private

Reset() [1/11]

void CDate_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 51 of file Date_.cpp.

References CDate_Base::e_not_set, CDate_Base::m_choice, and CDate_Base::ResetSelection().

Referenced by CDate_Base::~CDate_Base().

Reset() [2/11]

void CDate_std_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 56 of file Date_std_.cpp.

References CDate_std_Base::ResetDay(), CDate_std_Base::ResetHour(), CDate_std_Base::ResetMinute(), CDate_std_Base::ResetMonth(), CDate_std_Base::ResetSeason(), CDate_std_Base::ResetSecond(), and CDate_std_Base::ResetYear().

Reset() [3/11]

void CDbtag_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 71 of file Dbtag_.cpp.

References CDbtag_Base::ResetDb(), and CDbtag_Base::ResetTag().

Reset() [4/11]

void CInt_fuzz_Base::C_Range::Reset

(

void

)

Reset the whole object.

Definition at line 50 of file Int_fuzz_.cpp.

References CInt_fuzz_Base::C_Range::ResetMax(), and CInt_fuzz_Base::C_Range::ResetMin().

Reset() [5/11]

END_ENUM_INFO void CInt_fuzz_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 95 of file Int_fuzz_.cpp.

References CInt_fuzz_Base::e_not_set, CInt_fuzz_Base::m_choice, and CInt_fuzz_Base::ResetSelection().

Referenced by x_Assign(), and CInt_fuzz_Base::~CInt_fuzz_Base().

Reset() [6/11]

void CName_std_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 92 of file Name_std_.cpp.

References CName_std_Base::ResetFirst(), CName_std_Base::ResetFull(), CName_std_Base::ResetInitials(), CName_std_Base::ResetLast(), CName_std_Base::ResetMiddle(), CName_std_Base::ResetSuffix(), and CName_std_Base::ResetTitle().

Referenced by BOOST_AUTO_TEST_CASE().

Reset() [7/11]

void CObject_id_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 50 of file Object_id_.cpp.

References CObject_id_Base::e_not_set, CObject_id_Base::m_choice, and CObject_id_Base::ResetSelection().

Referenced by x_Assign(), and CObject_id_Base::~CObject_id_Base().

Reset() [8/11]

void CPerson_id_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 52 of file Person_id_.cpp.

References CPerson_id_Base::e_not_set, CPerson_id_Base::m_choice, and CPerson_id_Base::ResetSelection().

Referenced by CConvertAllAuthorToConsortium::x_ApplyToCAuth(), CConvertAuthorToConsortiumWhereConstraint::x_ApplyToCAuth(), and CPerson_id_Base::~CPerson_id_Base().

Reset() [9/11]

void CUser_field_Base::C_Data::Reset

(

void

)

Reset the whole object.

Definition at line 52 of file User_field_.cpp.

References CUser_field_Base::C_Data::e_not_set, CUser_field_Base::C_Data::m_choice, and CUser_field_Base::C_Data::ResetSelection().

Reset() [10/11]

void CUser_field_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 263 of file User_field_.cpp.

References CUser_field_Base::ResetData(), CUser_field_Base::ResetLabel(), and CUser_field_Base::ResetNum().

Referenced by CUser_field_Base::C_Data::~C_Data().

Reset() [11/11]

void CUser_object_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 78 of file User_object_.cpp.

References CUser_object_Base::ResetClass(), CUser_object_Base::ResetData(), and CUser_object_Base::ResetType().

Referenced by CBedImportData::Initialize(), CUser_object::SetCategory(), and CUser_object::SetExperiment().

ResetClass()

void CUser_object_Base::ResetClass

(

void

)

Reset Class data member.

Definition at line 52 of file User_object_.cpp.

References CUser_object_Base::m_Class, and CUser_object_Base::m_set_State.

Referenced by CUser_object_Base::Reset().

ResetData() [1/2]

void CUser_field_Base::ResetData

(

void

)

Reset Data data member.

Definition at line 249 of file User_field_.cpp.

References CUser_field_Base::m_Data, and CRef< C, Locker >::Reset().

Referenced by CUser_field_Base::CUser_field_Base(), CUser_field_Base::GetData(), CUser_field_Base::Reset(), CUser_field_Base::SetData(), CUser_object::SetRefGeneTrackingAssembly(), CUser_object::SetRefGeneTrackingIdenticalTo(), CRefGeneTrackLocListPanel::TransferDataFromWindow(), and CUserFieldStringListValidator::TransferFromWindow().

ResetData() [2/2]

void CUser_object_Base::ResetData

(

void

)

Reset Data data member.

Definition at line 72 of file User_object_.cpp.

References CUser_object_Base::m_Data, and CUser_object_Base::m_set_State.

Referenced by CModifyStructuredComment::ApplyToUserObject(), BOOST_AUTO_TEST_CASE(), CDBLinkField::ClearVal(), CGenomeProjectField::ClearVal(), CStructCommFieldValuePair::ClearVal(), CStructCommDBName::ClearVal(), CStructCommFieldName::ClearVal(), CStructuredCommentField::ClearVal(), CReorderStructuredComment::reorder_comment_by_rule(), CUser_object_Base::Reset(), CDBLinkField::SetVal(), CStructuredCommentField::SetVal(), CUser_object::x_RemoveUnreviewedType(), and CUser_object::x_RemoveUnverifiedType().

ResetDay()

void CDate_std_Base::ResetDay ( void  )

inline

Reset Day data member.

Definition at line 513 of file Date_std_.hpp.

References CDate_std_Base::m_Day, and CDate_std_Base::m_set_State.

Referenced by BOOST_AUTO_TEST_CASE(), and CDate_std_Base::Reset().

ResetDb()

void CDbtag_Base::ResetDb

(

void

)

Reset Db data member.

Definition at line 51 of file Dbtag_.cpp.

References CDbtag_Base::m_Db, and CDbtag_Base::m_set_State.

Referenced by CDbtag_Base::Reset().

ResetFirst()

void CName_std_Base::ResetFirst

(

void

)

Reset First data member.

Definition at line 56 of file Name_std_.cpp.

References CName_std_Base::m_First, and CName_std_Base::m_set_State.

Referenced by BOOST_AUTO_TEST_CASE(), NMacroUtil::RemoveFirstName(), CName_std_Base::Reset(), CMacroFunction_AuthorFix::s_BuildName(), CCleanup::s_CleanupNameStdBC(), and CCleanup::s_FixEtAl().

ResetFull()

void CName_std_Base::ResetFull

(

void

)

Reset Full data member.

Definition at line 68 of file Name_std_.cpp.

References CName_std_Base::m_Full, and CName_std_Base::m_set_State.

Referenced by CName_std_Base::Reset(), and CCleanup::s_CleanupNameStdBC().

ResetHour()

void CDate_std_Base::ResetHour ( void  )

inline

Reset Hour data member.

Definition at line 607 of file Date_std_.hpp.

References CDate_std_Base::m_Hour, and CDate_std_Base::m_set_State.

Referenced by CDate_std_Base::Reset(), and CNewCleanup_imp::x_DateStdBC().

ResetInitials()

void CName_std_Base::ResetInitials

(

void

)

Reset Initials data member.

Definition at line 74 of file Name_std_.cpp.

References CName_std_Base::m_Initials, and CName_std_Base::m_set_State.

Referenced by BOOST_AUTO_TEST_CASE(), NMacroUtil::RemoveFirstName(), NMacroUtil::RemoveMiddleInitial(), CName_std_Base::Reset(), CMacroFunction_AuthorFix::s_BuildName(), CCleanup::s_CleanupNameStdBC(), and CCleanup::s_FixEtAl().

ResetLabel()

void CUser_field_Base::ResetLabel

(

void

)

Reset Label data member.

Definition at line 235 of file User_field_.cpp.

References CUser_field_Base::m_Label.

Referenced by CUser_field_Base::CUser_field_Base(), CUser_field_Base::GetLabel(), CUser_field_Base::Reset(), and CUser_field_Base::SetLabel().

ResetLast()

void CName_std_Base::ResetLast

(

void

)

Reset Last data member.

Definition at line 50 of file Name_std_.cpp.

References CName_std_Base::m_Last, and CName_std_Base::m_set_State.

Referenced by CName_std_Base::Reset(), CMacroFunction_AuthorFix::s_BuildName(), and CCleanup::s_CleanupNameStdBC().

ResetMax()

void CInt_fuzz_Base::C_Range::ResetMax ( void  )

inline

Reset Max data member.

Definition at line 465 of file Int_fuzz_.hpp.

Referenced by CInt_fuzz_Base::C_Range::Reset().

ResetMiddle()

void CName_std_Base::ResetMiddle

(

void

)

Reset Middle data member.

Definition at line 62 of file Name_std_.cpp.

References CName_std_Base::m_Middle, and CName_std_Base::m_set_State.

Referenced by CName_std_Base::Reset(), and CCleanup::s_CleanupNameStdBC().

ResetMin()

void CInt_fuzz_Base::C_Range::ResetMin ( void  )

inline

Reset Min data member.

Definition at line 512 of file Int_fuzz_.hpp.

Referenced by CInt_fuzz_Base::C_Range::Reset().

ResetMinute()

void CDate_std_Base::ResetMinute ( void  )

inline

Reset Minute data member.

Definition at line 654 of file Date_std_.hpp.

References CDate_std_Base::m_Minute, and CDate_std_Base::m_set_State.

Referenced by CDate_std_Base::Reset(), and CNewCleanup_imp::x_DateStdBC().

ResetMonth()

void CDate_std_Base::ResetMonth ( void  )

inline

Reset Month data member.

Definition at line 466 of file Date_std_.hpp.

References CDate_std_Base::m_Month, and CDate_std_Base::m_set_State.

Referenced by BOOST_AUTO_TEST_CASE(), and CDate_std_Base::Reset().

ResetNum()

void CUser_field_Base::ResetNum ( void  )

inline

Reset Num data member.

Definition at line 977 of file User_field_.hpp.

References CUser_field_Base::m_Num, and CUser_field_Base::m_set_State.

Referenced by CUser_field_Base::Reset(), and CMacroFunction_AddDBLink::TheFunction().

ResetSeason()

void CDate_std_Base::ResetSeason

(

void

)

Reset Season data member.

Definition at line 50 of file Date_std_.cpp.

References CDate_std_Base::m_Season, and CDate_std_Base::m_set_State.

Referenced by CDate_std_Base::Reset().

ResetSecond()

void CDate_std_Base::ResetSecond ( void  )

inline

Reset Second data member.

Definition at line 701 of file Date_std_.hpp.

References CDate_std_Base::m_Second, and CDate_std_Base::m_set_State.

Referenced by CDate_std_Base::Reset(), and CNewCleanup_imp::x_DateStdBC().

ResetSelection() [1/5]

void CDate_Base::ResetSelection ( void  )

virtual

Reset the selection (set it to e_not_set).

Definition at line 57 of file Date_.cpp.

References CDate_Base::e_not_set, CDate_Base::e_Std, CDate_Base::e_Str, CDate_Base::m_choice, CDate_Base::m_object, and CDate_Base::m_string.

Referenced by CDate_Base::Reset(), and CDate_Base::SetStd().

ResetSelection() [2/5]

void CInt_fuzz_Base::ResetSelection ( void  )

virtual

Reset the selection (set it to e_not_set).

Definition at line 101 of file Int_fuzz_.cpp.

References CInt_fuzz_Base::e_Alt, CInt_fuzz_Base::e_not_set, CInt_fuzz_Base::e_Range, CInt_fuzz_Base::m_Alt, CInt_fuzz_Base::m_choice, and CInt_fuzz_Base::m_object.

Referenced by CInt_fuzz_Base::Reset(), and CInt_fuzz_Base::SetRange().

ResetSelection() [3/5]

void CObject_id_Base::ResetSelection ( void  )

virtual

Reset the selection (set it to e_not_set).

Definition at line 56 of file Object_id_.cpp.

References CObject_id_Base::e_not_set, CObject_id_Base::e_Str, CObject_id_Base::m_choice, and CObject_id_Base::m_string.

Referenced by CObject_id_Base::Reset().

ResetSelection() [4/5]

void CPerson_id_Base::ResetSelection ( void  )

virtual

Reset the selection (set it to e_not_set).

Definition at line 58 of file Person_id_.cpp.

References CPerson_id_Base::e_Consortium, CPerson_id_Base::e_Dbtag, CPerson_id_Base::e_Ml, CPerson_id_Base::e_Name, CPerson_id_Base::e_not_set, CPerson_id_Base::e_Str, CPerson_id_Base::m_choice, CPerson_id_Base::m_object, and CPerson_id_Base::m_string.

Referenced by CPerson_id_Base::Reset(), CPerson_id_Base::SetDbtag(), and CPerson_id_Base::SetName().

ResetSelection() [5/5]

void CUser_field_Base::C_Data::ResetSelection

(

void

)

Reset the selection (set it to e_not_set).

Definition at line 58 of file User_field_.cpp.

References e_not_set.

Referenced by CUser_field_Base::C_Data::Reset().

ResetSuffix()

void CName_std_Base::ResetSuffix

(

void

)

Reset Suffix data member.

Definition at line 80 of file Name_std_.cpp.

References CName_std_Base::m_set_State, and CName_std_Base::m_Suffix.

Referenced by CName_std_Base::Reset(), CMacroFunction_AuthorFix::s_BuildName(), CCleanup::s_CleanupNameStdBC(), CStripAuthorSuffix::x_ApplyToCAuth(), and CMacroFunction_AuthorFix::x_MakeAuthorChanges().

ResetTag()

void CDbtag_Base::ResetTag

(

void

)

Reset Tag data member.

Definition at line 57 of file Dbtag_.cpp.

References CDbtag_Base::m_Tag.

Referenced by CDbtag_Base::CDbtag_Base(), CDbtag_Base::GetTag(), CDbtag_Base::Reset(), CDbtag_Base::SetTag(), CEditingActionBiosourceDbxref::SetValue(), CEditingActionFeatDbxref::SetValue(), and CEditSeqId::x_CollectChangedIds().

ResetTitle()

void CName_std_Base::ResetTitle

(

void

)

Reset Title data member.

Definition at line 86 of file Name_std_.cpp.

References CName_std_Base::m_set_State, and CName_std_Base::m_Title.

Referenced by CName_std_Base::Reset(), and CCleanup::s_CleanupNameStdBC().

ResetType()

void CUser_object_Base::ResetType

(

void

)

Reset Type data member.

Definition at line 58 of file User_object_.cpp.

References CUser_object_Base::m_Type.

Referenced by CUser_object_Base::CUser_object_Base(), CUser_object_Base::GetType(), CUser_object_Base::Reset(), CUser_object::SetObjectType(), and CUser_object_Base::SetType().

ResetYear()

void CDate_std_Base::ResetYear ( void  )

inline

Reset Year data member.

Definition at line 419 of file Date_std_.hpp.

References CDate_std_Base::m_set_State, and CDate_std_Base::m_Year.

Referenced by CDate_std_Base::Reset().

Select() [1/10]

void CDate_Base::Select	(	E_Choice	index,
		EResetVariant	reset,
		CObjectMemoryPool *	pool
	)

Select the requested variant if needed, allocating CObject variants from memory pool.

Select() [2/10]

void CInt_fuzz_Base::Select	(	E_Choice	index,
		EResetVariant	reset,
		CObjectMemoryPool *	pool
	)

Select the requested variant if needed, allocating CObject variants from memory pool.

Select() [3/10]

void CObject_id_Base::Select	(	E_Choice	index,
		EResetVariant	reset,
		CObjectMemoryPool *	pool
	)

Select the requested variant if needed, allocating CObject variants from memory pool.

Select() [4/10]

void CPerson_id_Base::Select	(	E_Choice	index,
		EResetVariant	reset,
		CObjectMemoryPool *	pool
	)

Select the requested variant if needed, allocating CObject variants from memory pool.

Select() [5/10]

void CUser_field_Base::C_Data::Select	(	E_Choice	index,
		EResetVariant	reset,
		CObjectMemoryPool *	pool
	)

Select the requested variant if needed, allocating CObject variants from memory pool.

Select() [6/10]

void CDate_Base::Select	(	E_Choice	index,
		EResetVariant	reset = eDoResetVariant
	)

Select the requested variant if needed.

Parameters

index	New selection state.
reset	Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant.

Referenced by CDate_Base::SetStd(), and CDate_Base::SetStr().

Select() [7/10]

void CInt_fuzz_Base::Select	(	E_Choice	index,
		EResetVariant	reset = eDoResetVariant
	)

Select the requested variant if needed.

Parameters

index	New selection state.
reset	Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant.

Referenced by CInt_fuzz_Base::SetAlt(), CInt_fuzz_Base::SetLim(), CInt_fuzz_Base::SetP_m(), CInt_fuzz_Base::SetPct(), and CInt_fuzz_Base::SetRange().

Select() [8/10]

void CObject_id_Base::Select	(	E_Choice	index,
		EResetVariant	reset = eDoResetVariant
	)

Select the requested variant if needed.

Parameters

index	New selection state.
reset	Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant.

Referenced by CObject_id_Base::SetId(), and CObject_id_Base::SetStr().

Select() [9/10]

void CPerson_id_Base::Select	(	E_Choice	index,
		EResetVariant	reset = eDoResetVariant
	)

Select the requested variant if needed.

Parameters

index	New selection state.
reset	Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant.

Referenced by CPerson_id_Base::SetConsortium(), CPerson_id_Base::SetDbtag(), CPerson_id_Base::SetMl(), CPerson_id_Base::SetName(), CPerson_id_Base::SetStr(), CConvertAllAuthorToConsortium::x_ApplyToCAuth(), and CConvertAuthorToConsortiumWhereConstraint::x_ApplyToCAuth().

Select() [10/10]

void CUser_field_Base::C_Data::Select	(	E_Choice	index,
		EResetVariant	reset = eDoResetVariant
	)

Select the requested variant if needed.

Parameters

index	New selection state.
reset	Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant.

SelectionName() [1/5]

NCBI_NS_STD::string CDate_Base::SelectionName ( E_Choice  index )

static

Retrieve selection name (for diagnostic purposes).

Parameters

index

One of possible selection states.

Returns

Name string.

Definition at line 93 of file Date_.cpp.

References CDate_Base::sm_SelectionNames.

SelectionName() [2/5]

NCBI_NS_STD::string CInt_fuzz_Base::SelectionName ( E_Choice  index )

static

Retrieve selection name (for diagnostic purposes).

Parameters

index

One of possible selection states.

Returns

Name string.

Definition at line 149 of file Int_fuzz_.cpp.

References CInt_fuzz_Base::sm_SelectionNames.

SelectionName() [3/5]

NCBI_NS_STD::string CObject_id_Base::SelectionName ( E_Choice  index )

static

Retrieve selection name (for diagnostic purposes).

Parameters

index

One of possible selection states.

Returns

Name string.

Definition at line 89 of file Object_id_.cpp.

References CObject_id_Base::sm_SelectionNames.

Referenced by CSeq_id::Set().

SelectionName() [4/5]

NCBI_NS_STD::string CPerson_id_Base::SelectionName ( E_Choice  index )

static

Retrieve selection name (for diagnostic purposes).

Parameters

index

One of possible selection states.

Returns

Name string.

Definition at line 105 of file Person_id_.cpp.

References CPerson_id_Base::sm_SelectionNames.

SelectionName() [5/5]

NCBI_NS_STD::string CUser_field_Base::C_Data::SelectionName ( E_Choice  index )

static

Retrieve selection name (for diagnostic purposes).

Parameters

index

One of possible selection states.

Returns

Name string.

Definition at line 160 of file User_field_.cpp.

SetAlt()

CInt_fuzz_Base::TAlt & CInt_fuzz_Base::SetAlt ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 676 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::e_Alt, eDoNotResetVariant, CInt_fuzz_Base::m_Alt, and CInt_fuzz_Base::Select().

Referenced by CInt_fuzz::Add(), CInt_fuzz::AssignTranslated(), CInt_fuzz::Negate(), CRangeWithFuzz::x_AddFuzz(), x_Assign(), and CMappingRange::x_Map_Fuzz().

SetBool() [1/2]

void CUser_field_Base::C_Data::SetBool ( TBool  value )

inline

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 782 of file User_field_.hpp.

References eDoNotResetVariant, and rapidjson::value.

SetBool() [2/2]

CUser_field_Base::C_Data::TBool & CUser_field_Base::C_Data::SetBool ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 775 of file User_field_.hpp.

References eDoNotResetVariant.

Referenced by CUser_field::SetBool().

SetClass() [1/3]

void CUser_object_Base::SetClass ( const TClass &  value )

inline

Assign a value to Class data member.

Parameters

value

Value to assign

Definition at line 267 of file User_object_.hpp.

References CUser_object_Base::m_Class, CUser_object_Base::m_set_State, and rapidjson::value.

Referenced by NSNPVariationHelper::ConvertFeat(), CAnnotationASN1::CImplementationData::create_internal_feature(), CAutoDefOptions::MakeUserObject(), CAnnotationASN1::CImplementationData::model2spliced_seq_align(), PackAsUserObject(), CDemoContigAssemblyApp::Run(), and CDemoSeqQaApp::Run().

SetClass() [2/3]

void CUser_object_Base::SetClass ( CUser_object_Base::TClass &&  value )

inline

Definition at line 274 of file User_object_.hpp.

References CUser_object_Base::m_Class, CUser_object_Base::m_set_State, and rapidjson::value.

SetClass() [3/3]

CUser_object_Base::TClass & CUser_object_Base::SetClass ( void  )

inline

Assign a value to Class data member.

Returns

Reference to the data value.

Definition at line 281 of file User_object_.hpp.

References CUser_object_Base::IsSetClass(), CUser_object_Base::m_Class, CUser_object_Base::m_set_State, and CSerialObject::UnassignedString().

Referenced by CUser_object::SetCategory(), and CUser_object::SetExperiment().

SetConsortium() [1/2]

void CPerson_id_Base::SetConsortium

(

const TConsortium &

value

)

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 171 of file Person_id_.cpp.

References CPerson_id_Base::e_Consortium, eDoNotResetVariant, CPerson_id_Base::m_string, CPerson_id_Base::Select(), and rapidjson::value.

SetConsortium() [2/2]

CPerson_id_Base::TConsortium & CPerson_id_Base::SetConsortium ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 418 of file Person_id_.hpp.

References CPerson_id_Base::e_Consortium, eDoNotResetVariant, CPerson_id_Base::m_string, and CPerson_id_Base::Select().

Referenced by s_GetAuthorList(), CMacroFunction_SetPubAuthor::TheFunction(), CConvertAllAuthorToConsortium::x_ApplyToCAuth(), and CConvertAuthorToConsortiumWhereConstraint::x_ApplyToCAuth().

SetData() [1/3]

void CUser_field_Base::SetData

(

CUser_field_Base::TData &

value

)

Assign a value to Data data member.

Parameters

value

Reference to value.

Definition at line 258 of file User_field_.cpp.

References CUser_field_Base::m_Data, CRef< C, Locker >::Reset(), and rapidjson::value.

Referenced by AddAssemblyUserFieldsFromSeqTable(), CReadUtil::AddGeneOntologyTerm(), AddGoTermEvidence(), AddGoTermToList(), AddStrsField(), CValidErrorFormat::AddSuppression(), CGenericStructuredCommentColumn::AddToComment(), AddTpaAssemblyUserObject(), CScoreBuilder::AddTracebacks(), CTable2AsnContext::AddUserTrack(), CSetGlobalRefGeneStatus::ApplyToCSeq_entry(), CSplignFormatter::AsSeqAlignSet(), variation_ref::AttachAssertedSequence(), BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), ClearGoTermValue(), NSNPVariationHelper::ConvertFeat(), CAnnotationASN1::CImplementationData::create_ModelEvidence_user_object(), CTableAnnotDataSource::CreateFeature(), CTableImportDataSource::ExportTableParms(), CRegistryFile::FromConfigFile(), fta_build_structured_comment(), fta_create_far_fetch_policy_user_object(), fta_create_user_field(), fta_get_dblink_user_object(), fta_get_mga_user_object(), fta_get_project_user_object(), fta_get_user_field(), CBamAlignIterator::GetMatchAlign(), CCSraAlignIterator::GetMatchAlign(), CSequesterSets::GetParams(), GetParams(), CSNPDbFeatIterator::GetSeq_feat(), CAuthorizedAccessPanel::GetUser_object(), CRefGeneTrackingPanel::GetUser_object(), CUser_object::CRefGeneTrackingAccession::MakeAccessionField(), CWig2tableApplication::MakeAnnot(), MakeOriginalIdField(), CBam2Seq_graph::MakeSeq_annot(), MakeStructuredCommentField(), MakeTableMetaInfoField(), CStructuredCommentField::MakeUserObject(), CEditingActionDescUserObject::Modify(), CEditingActionDescLocalId::Modify(), CEditingActionDescComment::Modify(), CSubPrep_panel::OnFlatfileClick(), CPhyTreeView::OnSomethingEdited(), CTextViewProjectItemExtension::ProjectItemAttached(), CRegistryReadView::ResolveField(), CDemoContigAssemblyApp::Run(), s_AddNewDBlinkValue(), s_AddNewUserField(), CCleanup::s_CleanupGeneOntology(), CCleanup::s_CleanupGenomeAssembly(), CCleanup::s_CleanupStructuredComment(), CSingleAssemblyTrackingPanel::s_CreateTPAAssemblyField(), s_PackAsUserField(), s_SetDBLinkFieldVals(), s_SetPrimitiveData(), CTableImportColumn::SaveAsn(), CBLASTToolManager::SaveSettings(), CTreeLabel::SaveToUserObject(), CGBProjectHandle::SaveViewSettings(), CRegistryWriteView::Set(), CGuiRegistry::Set(), CSeqTableSetExt::SetBytes(), CSageData::SetCount(), CUser_object::SetFileTrackURL(), SetGoTermValue(), CSeqTableSetExt::SetInt(), CSeqTableSetExt::SetInt8(), CWndLayoutReg::SetLayout(), CSageData::SetMethod(), CSeqTableSetAnyObjField::SetObjectField(), CSeqTableSetExt::SetReal(), CUser_object::SetRefGeneTrackingAssembly(), CUser_object::SetRefGeneTrackingIdenticalTo(), CSeqTableSetExt::SetString(), CSageData::SetTag(), CGenomeProjectField::SetVal(), CDBLinkField::SetVal(), CStructuredCommentField::SetVal(), CEditingActionDescUserObject::SetValue(), CMacroFunction_AddDBLink::TheFunction(), CMacroFunction_ParseToStructComm::TheFunction(), CRefGeneTrackLocListPanel::TransferDataFromWindow(), CSequencingTechnologyPanel::TransferDataFromWindow(), CSingleRefGeneTrackLocPanel::TransferDataFromWindow(), CUserFieldStringListValidator::TransferFromWindow(), CUser_object::UpdateNcbiCleanup(), CCSraAlignIterator::x_AddField(), CSourceModParser::x_ApplyGenomeProjectsDBMods(), CSourceModParser::x_ApplyTPAMods(), CCleanup::x_CleanupUserField(), CSplitDblinkQuals::x_ConvertStrToStrs(), CTableViewWithTextViewNav::x_CreateDefaultTextView(), CSeqDBVol::x_GetAsnDefline(), CAutoDefOptions::x_MakeBooleanField(), CAutoDefOptions::x_MakeCustomFeatureClause(), CAutoDefOptions::x_MakeMaxMods(), CAutoDefOptions::x_MakeModifierList(), CAutoDefOptions::x_MakeSuppressedFeatures(), CAutoDefOptions::x_MakeTargetedLocusName(), CURLTooltipHandler::x_ParseGenomicLinkHref(), CFeaturePanel::x_SaveSettings(), CDescrModApply::x_SetDBLinkFieldVals(), CSeqTableSetExt::x_SetField(), and SSNP_Info::x_UpdateSeq_featData().

SetData() [2/3]

CUser_field_Base::TData & CUser_field_Base::SetData ( void  )

inline

Assign a value to Data data member.

Returns

Reference to the data value.

Definition at line 1033 of file User_field_.hpp.

References CUser_field_Base::m_Data, and CUser_field_Base::ResetData().

Referenced by CUser_field::AddField(), CUser_field::SetBool(), CUser_field::SetDouble(), CUser_field::SetInt(), CUser_field::SetString(), and CUser_field::SetValue().

SetData() [3/3]

CUser_object_Base::TData & CUser_object_Base::SetData ( void  )

inline

Assign a value to Data data member.

Returns

Reference to the data value.

Definition at line 341 of file User_object_.hpp.

References CUser_object_Base::m_Data, and CUser_object_Base::m_set_State.

Referenced by AddAssemblyUserFieldsFromSeqTable(), CUser_object::AddField(), AddLocalIdUserObjects(), AddStrsField(), CValidErrorFormat::AddSuppression(), AddTpaAssemblyUserObject(), CModifyStructuredComment::ApplyToUserObject(), CSplignFormatter::AsSeqAlignSet(), CDiscrepancyVisitorImpl< _Name >::Autofix(), BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), CGenericStructuredCommentColumn::ClearInComment(), CDBLinkField::ClearVal(), CGenomeProjectField::ClearVal(), CStructCommFieldValuePair::ClearVal(), CStructCommDBName::ClearVal(), CStructCommFieldName::ClearVal(), CStructuredCommentField::ClearVal(), CAnnotationASN1::CImplementationData::create_ModelEvidence_user_object(), CTableAnnotDataSource::CreateFeature(), CTableImportDataSource::ExportTableParms(), CBedAnnotAssembler::FinalizeAnnot(), fta_build_ena_user_object(), fta_build_structured_comment(), fta_create_far_fetch_policy_user_object(), fta_get_dblink_user_object(), fta_get_mga_user_object(), fta_get_project_user_object(), fta_get_str_user_field(), fta_get_user_field(), CAutoAddDBLink::Get(), CBamAlignIterator::GetMatchAlign(), CCSraAlignIterator::GetMatchAlign(), CSequesterSets::GetParams(), GetParams(), CSNPDbFeatIterator::GetSeq_feat(), CAuthorizedAccessPanel::GetUser_object(), CRefGeneTrackingPanel::GetUser_object(), CMultiReader::LoadTemplate(), CWig2tableApplication::MakeAnnot(), NMacroUtil::MakeNcbiAutofixUserObject(), CAutoDefOptions::MakeUserObject(), CStructuredCommentField::MakeUserObject(), CEditingActionDescUserObject::Modify(), CEditingActionDescStructCommFieldName::Modify(), CSubPrep_panel::OnFlatfileClick(), PackAsUserObject(), CUserFieldListPanel::PopulateFields(), CTextViewProjectItemExtension::ProjectItemAttached(), RemoveDuplicateGoTerms(), CSeq_feat::RemoveExt(), CUser_object::RemoveNamedField(), CTableAnnotDataSource::RemoveSeqLocs(), CReorderStructuredComment::reorder_comment_by_rule(), CComment_rule::ReorderFields(), s_AddNewUserField(), CCleanup::s_CleanupDBLink(), CCleanup::s_CleanupGeneOntology(), CCleanup::s_CleanupGenomeAssembly(), CCleanup::s_CleanupStructuredComment(), CMacroFunction_SetStructCommDb::s_MoveSuffixToTheEnd(), s_PopulateUserObject(), CCleanup::s_RemoveEmptyFields(), s_SetFieldAt(), CPhyloSelectionSetMgr::SaveToUserObject(), CUser_object::SetFieldRef(), CTableDataValidateParams::SetNamedBoolField(), CProjectItemExtra::SetStr(), CDBLinkField::SetVal(), CStructuredCommentField::SetVal(), CGenomeProjectField::SetVal(), sx_GetSecondaryIndicator(), CTrackData::WriteToAnnot(), CCSraAlignIterator::x_AddField(), CTableViewWithTextViewNav::x_CreateDefaultTextView(), SSNP_Info::x_CreateSeq_feat(), CSeqDBVol::x_GetAsnDefline(), CCSraAlignIterator::x_GetSecondaryIndicator(), CStructuredCommentField::x_InsertFieldAtCorrectPosition(), CStructCommFieldValuePair::x_InsertFieldAtCorrectPosition(), x_MakeDefaultTextOptions(), CAutoDefOptions::x_MakeModifierList(), CAutoDefOptions::x_MakeSuppressedFeatures(), CSubmissionWizard::x_MergeDBLink(), CURLTooltipHandler::x_ParseGenomicLinkHref(), CUser_object::x_RemoveUnreviewedType(), CUser_object::x_RemoveUnverifiedType(), CDescrModApply::x_SetDBLinkFieldVals(), SSNP_Info::x_UpdateSeq_featData(), and CVcfReader::xProcessFormat().

SetDay() [1/2]

void CDate_std_Base::SetDay ( CDate_std_Base::TDay  value )

inline

Assign a value to Day data member.

Parameters

value

Value to assign

Definition at line 529 of file Date_std_.hpp.

References CDate_std_Base::m_Day, CDate_std_Base::m_set_State, and rapidjson::value.

Referenced by BOOST_AUTO_TEST_CASE(), CSubSource::DateFromCollectionDate(), get_full_date(), get_lanl_date(), CSubSource::GetDateFromISODate(), GetEmblDate(), CSeq_id_PDB_Info::GetPackedSeqId(), MakeBadSeasonDate(), s_GetDateFromArticleDate(), s_GetDateFromPubDate(), and s_GetDateFromPubMedPubDate().

SetDay() [2/2]

CDate_std_Base::TDay & CDate_std_Base::SetDay ( void  )

inline

Assign a value to Day data member.

Returns

Reference to the data value.

Definition at line 536 of file Date_std_.hpp.

References CDate_std_Base::IsSetDay(), CDate_std_Base::m_Day, CDate_std_Base::m_set_State, and CSerialObject::UnassignedByte().

Referenced by CDate_std::SetToTime().

SetDb() [1/3]

void CDbtag_Base::SetDb ( const TDb &  value )

inline

Assign a value to Db data member.

Parameters

value

Value to assign

Definition at line 229 of file Dbtag_.hpp.

References CDbtag_Base::m_Db, CDbtag_Base::m_set_State, and rapidjson::value.

Referenced by CSeq_feat::AddDbxref(), Sequence::AddMMDBAnnotTag(), CSrcTableDbxrefColumn::AddToBioSource(), CApplyFBOL::apply(), CBarcodeTool::ApplyDbxrefs(), BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), BuildGoodSegSet(), CLocalToGeneralId::CLocalToGeneralId(), CConvertImpToProt::Convert(), CNewCleanup_imp::DbtagBC(), CSeq_id_General_Tree::FindMatch(), CNewCleanup_imp::GBQualSeqFeatBC(), CWGSDb_Impl::GetGeneralSeq_id(), GetNewGeneralProtId(), CSeq_id_General_PlainInfo::GetPackedSeqId(), GetProtRefSeqId(), CIdHandler::GnomonMRNA(), CIdHandler::GnomonProtein(), CCSraDb_Impl::MakeShortReadId(), PssmMaker::modifyQuery(), CNewCleanup_imp::MoveDbxrefs(), CProcessor_ExtAnnot::Process(), CDUpdater::reformatBioseq(), CFindASN1Dlg::ReplaceInDbxref(), CSeq_id_General_Id_Info::Restore(), CSeq_id_General_Str_Info::Restore(), CAgpconvertApplication::Run(), s_AddGeneralAndLocal(), s_AssignDbtag(), variation::CVariationUtil::s_AttachGeneIDdbxref(), s_GetArticleIdSet(), CMacroFunction_MakeBoldXrefs::s_MakeBarcodeDbXref(), s_NewDbtagId(), s_ProcessOrgRefMapLine(), CSeq_id::Set(), SetDbxref(), CSeqTableSetDbxref::SetInt(), CSeqTableSetDbxref::SetInt8(), CTaxon2_data::SetProperty(), CSeqTableSetDbxref::SetString(), COrg_ref::SetTaxId(), CEditingActionBiosourceDbxref::SetValue(), CEditingActionFeatDbxref::SetValue(), StrToSeqId(), TestTrimForFrame(), TryOneCDSCase(), CFeatureTableReader_Imp::x_AddQualifierToFeature(), CFeatureGenerator::SImplementation::x_AddSelectMarkup(), CSourceModParser::x_ApplyMods(), x_Assign(), CEditSeqId::x_CollectChangedIds(), SSNP_Info::x_CreateSeq_feat(), CWriteDB_Impl::x_ExtractDeflines(), CWriteDB_Impl::x_GetFastaReaderDeflines(), CSeqDBVol::x_GetTaxonomy(), CGff2Reader::x_ParseDbtag(), SSNP_Info::x_UpdateSeq_featData(), CVcfReader::xAssignVariantProps(), and CGff3ImportData::xInitializeDbxref().

SetDb() [2/3]

void CDbtag_Base::SetDb ( CDbtag_Base::TDb &&  value )

inline

Definition at line 236 of file Dbtag_.hpp.

References CDbtag_Base::m_Db, CDbtag_Base::m_set_State, and rapidjson::value.

SetDb() [3/3]

CDbtag_Base::TDb & CDbtag_Base::SetDb ( void  )

inline

Assign a value to Db data member.

Returns

Reference to the data value.

Definition at line 243 of file Dbtag_.hpp.

References CDbtag_Base::IsSetDb(), CDbtag_Base::m_Db, CDbtag_Base::m_set_State, and CSerialObject::UnassignedString().

Referenced by CDbtag::SetAsMatchingTo().

SetDbtag() [1/2]

void CPerson_id_Base::SetDbtag

(

CPerson_id_Base::TDbtag &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 127 of file Person_id_.cpp.

References CObject::AddReference(), CPerson_id_Base::e_Dbtag, CPerson_id_Base::m_choice, CPerson_id_Base::m_object, CPerson_id_Base::ResetSelection(), and rapidjson::value.

SetDbtag() [2/2]

CPerson_id_Base::TDbtag & CPerson_id_Base::SetDbtag

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 121 of file Person_id_.cpp.

References CPerson_id_Base::e_Dbtag, eDoNotResetVariant, CPerson_id_Base::m_object, and CPerson_id_Base::Select().

SetFields()

CUser_field_Base::C_Data::TFields & CUser_field_Base::C_Data::SetFields ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 908 of file User_field_.hpp.

References eDoNotResetVariant.

Referenced by CUser_field::AddField(), CUser_field::SetValue(), and CSeqTableSetExt::x_SetField().

SetFirst() [1/3]

void CName_std_Base::SetFirst ( const TFirst &  value )

inline

Assign a value to First data member.

Parameters

value

Value to assign

Definition at line 478 of file Name_std_.hpp.

References CName_std_Base::m_First, CName_std_Base::m_set_State, and rapidjson::value.

Referenced by NMacroUtil::ApplyAuthorNames(), NMacroUtil::ApplyFirstName(), BOOST_AUTO_TEST_CASE(), FixCapitalization(), MoveMiddleToFirst(), CMacroFunction_AuthorFix::s_BuildName(), CCleanup::s_CleanupNameStdBC(), CMacroFunction_FixPubCaps::s_FixCapitalizationInAuthor(), s_GetAuthorNames(), CMacroFunction_AuthorFix::s_MoveMiddleToFirst(), CMacroFunction_AuthorFix::s_ReverseAuthorNames(), CMacroFunction_AddPubAuthor::x_AddAuthor(), and CFixAuthorCap::x_ApplyToCAuth().

SetFirst() [2/3]

void CName_std_Base::SetFirst ( CName_std_Base::TFirst &&  value )

inline

Definition at line 485 of file Name_std_.hpp.

References CName_std_Base::m_First, CName_std_Base::m_set_State, and rapidjson::value.

SetFirst() [3/3]

CName_std_Base::TFirst & CName_std_Base::SetFirst ( void  )

inline

Assign a value to First data member.

Returns

Reference to the data value.

Definition at line 492 of file Name_std_.hpp.

References CName_std_Base::IsSetFirst(), CName_std_Base::m_First, CName_std_Base::m_set_State, and CSerialObject::UnassignedString().

SetFull() [1/3]

void CName_std_Base::SetFull ( const TFull &  value )

inline

Assign a value to Full data member.

Parameters

value

Value to assign

Definition at line 572 of file Name_std_.hpp.

References CName_std_Base::m_Full, CName_std_Base::m_set_State, and rapidjson::value.

SetFull() [2/3]

void CName_std_Base::SetFull ( CName_std_Base::TFull &&  value )

inline

Definition at line 579 of file Name_std_.hpp.

References CName_std_Base::m_Full, CName_std_Base::m_set_State, and rapidjson::value.

SetFull() [3/3]

CName_std_Base::TFull & CName_std_Base::SetFull ( void  )

inline

Assign a value to Full data member.

Returns

Reference to the data value.

Definition at line 586 of file Name_std_.hpp.

References CName_std_Base::IsSetFull(), CName_std_Base::m_Full, CName_std_Base::m_set_State, and CSerialObject::UnassignedString().

SetHour() [1/2]

void CDate_std_Base::SetHour ( CDate_std_Base::THour  value )

inline

Assign a value to Hour data member.

Parameters

value

Value to assign

Definition at line 623 of file Date_std_.hpp.

References CDate_std_Base::m_Hour, CDate_std_Base::m_set_State, and rapidjson::value.

Referenced by CSeq_id_PDB_Info::GetPackedSeqId(), and s_GetDateFromPubMedPubDate().

SetHour() [2/2]

CDate_std_Base::THour & CDate_std_Base::SetHour ( void  )

inline

Assign a value to Hour data member.

Returns

Reference to the data value.

Definition at line 630 of file Date_std_.hpp.

References CDate_std_Base::IsSetHour(), CDate_std_Base::m_Hour, CDate_std_Base::m_set_State, and CSerialObject::UnassignedByte().

Referenced by CDate_std::SetToTime().

SetId() [1/2]

void CObject_id_Base::SetId ( CObject_id_Base::TId  value )

inline

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 284 of file Object_id_.hpp.

References CObject_id_Base::e_Id, eDoNotResetVariant, CObject_id_Base::m_Id, CObject_id_Base::Select(), and rapidjson::value.

SetId() [2/2]

CObject_id_Base::TId & CObject_id_Base::SetId ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 277 of file Object_id_.hpp.

References CObject_id_Base::e_Id, eDoNotResetVariant, CObject_id_Base::m_Id, and CObject_id_Base::Select().

Referenced by CSeq_feat_EditHandle::AddFeatId(), CSeq_feat_EditHandle::AddFeatXref(), subfuse::CSubmissionCollector::AdjustLocalIds(), CReadUtil::AsSeqId(), BOOST_AUTO_TEST_CASE(), CFeat_CI::CFeat_CI(), CSeq_id_Local_Info::CSeq_id_Local_Info(), CSeqIdGenerator::GenerateID(), CSeq_id_Local_Info::GetPackedSeqId(), CReadSharedObjectIdHookBase::GetSharedObject_id(), PssmMaker::modifyQuery(), CDisplaySeqalign::PrepareBlastUngappedSeqalignEx2(), CFeaturePropagator::PropagateFeatureList(), CSeq_feat_EditHandle::RemoveFeatId(), CSeq_feat_EditHandle::RemoveFeatXref(), CDemoApp::Run(), s_AssignObject_id(), CAgpToSeqEntry::s_LocalSeqIdFromStr(), s_SetFeatId(), s_UpdateFeatureId(), CSeq_id::Set(), CObject_id::SetAsMatchingTo(), CSeq_feat_EditHandle::SetFeatId(), CObject_id::SetGi(), CIdHandler::SetId(), CObject_id::SetId8(), CObject_id::SetStrOrId(), CReadBlastApp::StoreBlast(), sx_SetTag(), CFeatureTableReader_Imp::x_AddQualifierToFeature(), x_Assign(), CImportFeatTable::x_GetFixedId(), CGffBaseColumns::xInitFeatureId(), CBedReader::xSetFeatureIdsBlock(), CBedReader::xSetFeatureIdsCds(), CBedReader::xSetFeatureIdsChrom(), CBedReader::xSetFeatureIdsRna(), and CBedReader::xSetFeatureIdsThick().

SetInitials() [1/3]

void CName_std_Base::SetInitials ( const TInitials &  value )

inline

Assign a value to Initials data member.

Parameters

value

Value to assign

Definition at line 619 of file Name_std_.hpp.

References CName_std_Base::m_Initials, CName_std_Base::m_set_State, and rapidjson::value.

Referenced by NMacroUtil::ApplyAuthorNames(), NMacroUtil::ApplyFirstName(), NMacroUtil::ApplyMiddleInitial(), BOOST_AUTO_TEST_CASE(), FixCapitalization(), FixInitials(), fta_fix_last_initials(), GenerateInitials(), get_std_auth(), NMacroUtil::RemoveFirstName(), NMacroUtil::RemoveMiddleInitial(), CMacroFunction_AuthorFix::s_BuildName(), CCleanup::s_CleanupNameStdBC(), CCleanup::s_ExtractSuffixFromInitials(), CMacroFunction_FixPubCaps::s_FixCapitalizationInAuthor(), CMacroFunction_AuthorFix::s_FixInitials(), IAuthorEditor::s_FixInitials(), s_GetAuthorNames(), CMacroFunction_AuthorFix::s_MoveMiddleToFirst(), CMacroFunction_AuthorFix::s_ReverseAuthorNames(), NMacroUtil::s_SetInitials(), CMacroFunction_AuthorFix::s_TruncateMiddleInitials(), and CMacroFunction_AddPubAuthor::x_AddAuthor().

SetInitials() [2/3]

void CName_std_Base::SetInitials ( CName_std_Base::TInitials &&  value )

inline

Definition at line 626 of file Name_std_.hpp.

References CName_std_Base::m_Initials, CName_std_Base::m_set_State, and rapidjson::value.

SetInitials() [3/3]

CName_std_Base::TInitials & CName_std_Base::SetInitials ( void  )

inline

Assign a value to Initials data member.

Returns

Reference to the data value.

Definition at line 633 of file Name_std_.hpp.

References CName_std_Base::IsSetInitials(), CName_std_Base::m_Initials, CName_std_Base::m_set_State, and CSerialObject::UnassignedString().

SetInt() [1/2]

void CUser_field_Base::C_Data::SetInt ( TInt  value )

inline

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 728 of file User_field_.hpp.

References eDoNotResetVariant, and rapidjson::value.

SetInt() [2/2]

CUser_field_Base::C_Data::TInt & CUser_field_Base::C_Data::SetInt ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 721 of file User_field_.hpp.

References eDoNotResetVariant.

Referenced by CUser_field::SetInt().

SetInts()

CUser_field_Base::C_Data::TInts & CUser_field_Base::C_Data::SetInts ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 848 of file User_field_.hpp.

References eDoNotResetVariant.

Referenced by CUser_field::SetValue().

SetLabel() [1/2]

void CUser_field_Base::SetLabel

(

CUser_field_Base::TLabel &

value

)

Assign a value to Label data member.

Parameters

value

Reference to value.

Definition at line 244 of file User_field_.cpp.

References CUser_field_Base::m_Label, and rapidjson::value.

Referenced by AddAssemblyUserFieldsFromSeqTable(), CUser_field::AddField(), CUser_object::AddField(), CReadUtil::AddGeneOntologyTerm(), AddGoTermEvidence(), AddGoTermToList(), AddStrsField(), CValidErrorFormat::AddSuppression(), CGenericStructuredCommentColumn::AddToComment(), AddTpaAssemblyUserObject(), CTable2AsnContext::AddUserTrack(), CSplignFormatter::AsSeqAlignSet(), BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), CAnnotationASN1::CImplementationData::create_ModelEvidence_user_object(), CTableImportDataSource::ExportTableParms(), fta_build_structured_comment(), fta_create_far_fetch_policy_user_object(), fta_create_user_field(), fta_get_dblink_user_object(), fta_get_mga_user_object(), fta_get_project_user_object(), fta_get_str_user_field(), fta_get_user_field(), CAutoAddDBLink::Get(), CBamAlignIterator::GetMatchAlign(), CCSraAlignIterator::GetMatchAlign(), CSeqTableNextObjectUserField::GetNextObject(), CSequesterSets::GetParams(), GetParams(), CSNPDbFeatIterator::GetSeq_feat(), CAuthorizedAccessPanel::GetUser_object(), CRefGeneTrackingPanel::GetUser_object(), CUser_object::CRefGeneTrackingAccession::MakeAccessionField(), CWig2tableApplication::MakeAnnot(), MakeGoTerm(), MakeOriginalIdField(), CBam2Seq_graph::MakeSeq_annot(), MakeStructuredCommentField(), CStructuredCommentField::MakeUserObject(), CEditingActionDescStructCommFieldName::Modify(), CSubPrep_panel::OnFlatfileClick(), CTextViewProjectItemExtension::ProjectItemAttached(), s_AddNewUserField(), CSingleAssemblyTrackingPanel::s_CreateTPAAssemblyField(), s_PackAsUserField(), s_SetDBLinkFieldVals(), s_SetFieldAt(), CTableImportColumn::SaveAsn(), CUser_object::SetFieldRef(), CUser_field::SetFieldRef(), SetGoTermValue(), CSeqTableSetAnyObjField::SetObjectField(), CProjectItemExtra::SetStr(), CDBLinkField::SetVal(), CStructuredCommentField::SetVal(), CGenomeProjectField::SetVal(), CMacroFunction_ParseToStructComm::TheFunction(), CRefGeneTrackLocListPanel::TransferDataFromWindow(), CSingleRefGeneTrackLocPanel::TransferDataFromWindow(), CCSraAlignIterator::x_AddField(), CSourceModParser::x_ApplyGenomeProjectsDBMods(), CSourceModParser::x_ApplyTPAMods(), CCleanup::x_CleanupUserField(), CSplitDblinkQuals::x_ConvertStrsToStrs(), CTableViewWithTextViewNav::x_CreateDefaultTextView(), SSNP_Info::x_CreateSeq_feat(), CSeqDBVol::x_GetAsnDefline(), CAutoDefOptions::x_MakeBooleanField(), CAutoDefOptions::x_MakeCustomFeatureClause(), CAutoDefOptions::x_MakeMaxMods(), CAutoDefOptions::x_MakeModifierList(), CAutoDefOptions::x_MakeSuppressedFeatures(), CAutoDefOptions::x_MakeTargetedLocusName(), CURLTooltipHandler::x_ParseGenomicLinkHref(), CDescrModApply::x_SetDBLinkFieldVals(), CSeqTableSetExt::x_SetField(), SSNP_Info::x_UpdateSeq_featData(), and CVcfReader::xProcessFormat().

SetLabel() [2/2]

CUser_field_Base::TLabel & CUser_field_Base::SetLabel ( void  )

inline

Assign a value to Label data member.

Returns

Reference to the data value.

Definition at line 956 of file User_field_.hpp.

References CUser_field_Base::m_Label, and CUser_field_Base::ResetLabel().

SetLast() [1/3]

void CName_std_Base::SetLast ( const TLast &  value )

inline

Assign a value to Last data member.

Parameters

value

Value to assign

Definition at line 431 of file Name_std_.hpp.

References CName_std_Base::m_Last, CName_std_Base::m_set_State, and rapidjson::value.

Referenced by NMacroUtil::ApplyAuthorNames(), BOOST_AUTO_TEST_CASE(), FixCapitalization(), fta_fix_last_initials(), get_std_auth(), CMacroFunction_AuthorFix::s_BuildName(), CCleanup::s_CleanupNameStdBC(), CMacroFunction_FixPubCaps::s_FixCapitalizationInAuthor(), CCleanup::s_FixEtAl(), s_GetAuthorNames(), CMacroFunction_AuthorFix::s_ReverseAuthorNames(), CMacroFunction_AddPubAuthor::x_AddAuthor(), and CFixAuthorCap::x_ApplyToCAuth().

SetLast() [2/3]

void CName_std_Base::SetLast ( CName_std_Base::TLast &&  value )

inline

Definition at line 438 of file Name_std_.hpp.

References CName_std_Base::m_Last, CName_std_Base::m_set_State, and rapidjson::value.

SetLast() [3/3]

CName_std_Base::TLast & CName_std_Base::SetLast ( void  )

inline

Assign a value to Last data member.

Returns

Reference to the data value.

Definition at line 445 of file Name_std_.hpp.

References CName_std_Base::IsSetLast(), CName_std_Base::m_Last, CName_std_Base::m_set_State, and CSerialObject::UnassignedString().

Referenced by CName_std::ExtractSuffixFromLastName().

SetLim() [1/2]

void CInt_fuzz_Base::SetLim ( CInt_fuzz_Base::TLim  value )

inline

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 656 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::e_Lim, eDoNotResetVariant, CInt_fuzz_Base::m_Lim, CInt_fuzz_Base::Select(), and rapidjson::value.

SetLim() [2/2]

CInt_fuzz_Base::TLim & CInt_fuzz_Base::SetLim ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 649 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::e_Lim, eDoNotResetVariant, CInt_fuzz_Base::m_Lim, and CInt_fuzz_Base::Select().

Referenced by CInt_fuzz::Add(), variation::ApplyOffsetFuzz(), GetIntFuzzPtr(), CInt_fuzz::Negate(), CSeq_loc_Conversion::ReverseFuzz(), CSeq_point::SetLeftOf(), CPacked_seqpnt::SetPartialStart(), CSeq_interval::SetPartialStart(), CSeq_point::SetPartialStart(), CPacked_seqpnt::SetPartialStop(), CSeq_interval::SetPartialStop(), CSeq_point::SetPartialStop(), CSeq_point::SetRightOf(), CPacked_seqpnt::SetTruncatedStart(), CSeq_interval::SetTruncatedStart(), CSeq_point::SetTruncatedStart(), CPacked_seqpnt::SetTruncatedStop(), CSeq_interval::SetTruncatedStop(), CSeq_point::SetTruncatedStop(), variation::SwapLtGtFuzz(), CRangeWithFuzz::x_AddFuzz(), x_Assign(), variation_ref::CHgvsParser::x_general_pos(), variation::CHgvsParser::x_general_pos(), variation_ref::CHgvsParser::x_int_fuzz(), variation::CHgvsParser::x_int_fuzz(), CMappingRange::x_Map_Fuzz(), xgbint_ver(), and xgbload_number().

SetMax() [1/2]

void CInt_fuzz_Base::C_Range::SetMax ( TMax  value )

inline

Assign a value to Max data member.

Parameters

value

Value to assign

Definition at line 481 of file Int_fuzz_.hpp.

References rapidjson::value.

Referenced by CInt_fuzz::AssignTranslated(), GetIntFuzzPtr(), CRangeWithFuzz::x_AddFuzz(), x_Assign(), variation_ref::CHgvsParser::x_fuzzy_pos(), variation::CHgvsParser::x_fuzzy_pos(), variation::CHgvsParser::x_general_pos(), variation_ref::CHgvsParser::x_int_fuzz(), variation::CHgvsParser::x_int_fuzz(), and xgbload_number().

SetMax() [2/2]

CInt_fuzz_Base::C_Range::TMax & CInt_fuzz_Base::C_Range::SetMax ( void  )

inline

Assign a value to Max data member.

Returns

Reference to the data value.

Definition at line 488 of file Int_fuzz_.hpp.

References CSerialObject::UnassignedByte().

SetMiddle() [1/3]

void CName_std_Base::SetMiddle ( const TMiddle &  value )

inline

Assign a value to Middle data member.

Parameters

value

Value to assign

Definition at line 525 of file Name_std_.hpp.

References CName_std_Base::m_Middle, CName_std_Base::m_set_State, and rapidjson::value.

Referenced by CCleanup::s_CleanupNameStdBC().

SetMiddle() [2/3]

void CName_std_Base::SetMiddle ( CName_std_Base::TMiddle &&  value )

inline

Definition at line 532 of file Name_std_.hpp.

References CName_std_Base::m_Middle, CName_std_Base::m_set_State, and rapidjson::value.

SetMiddle() [3/3]

CName_std_Base::TMiddle & CName_std_Base::SetMiddle ( void  )

inline

Assign a value to Middle data member.

Returns

Reference to the data value.

Definition at line 539 of file Name_std_.hpp.

References CName_std_Base::IsSetMiddle(), CName_std_Base::m_Middle, CName_std_Base::m_set_State, and CSerialObject::UnassignedString().

SetMin() [1/2]

void CInt_fuzz_Base::C_Range::SetMin ( TMin  value )

inline

Assign a value to Min data member.

Parameters

value

Value to assign

Definition at line 528 of file Int_fuzz_.hpp.

References rapidjson::value.

Referenced by CInt_fuzz::AssignTranslated(), GetIntFuzzPtr(), CRangeWithFuzz::x_AddFuzz(), x_Assign(), variation_ref::CHgvsParser::x_fuzzy_pos(), variation::CHgvsParser::x_fuzzy_pos(), variation::CHgvsParser::x_general_pos(), variation_ref::CHgvsParser::x_int_fuzz(), variation::CHgvsParser::x_int_fuzz(), and xgbload_number().

SetMin() [2/2]

CInt_fuzz_Base::C_Range::TMin & CInt_fuzz_Base::C_Range::SetMin ( void  )

inline

Assign a value to Min data member.

Returns

Reference to the data value.

Definition at line 535 of file Int_fuzz_.hpp.

References CSerialObject::UnassignedByte().

SetMinute() [1/2]

void CDate_std_Base::SetMinute ( CDate_std_Base::TMinute  value )

inline

Assign a value to Minute data member.

Parameters

value

Value to assign

Definition at line 670 of file Date_std_.hpp.

References CDate_std_Base::m_Minute, CDate_std_Base::m_set_State, and rapidjson::value.

Referenced by CSeq_id_PDB_Info::GetPackedSeqId(), and s_GetDateFromPubMedPubDate().

SetMinute() [2/2]

CDate_std_Base::TMinute & CDate_std_Base::SetMinute ( void  )

inline

Assign a value to Minute data member.

Returns

Reference to the data value.

Definition at line 677 of file Date_std_.hpp.

References CDate_std_Base::IsSetMinute(), CDate_std_Base::m_Minute, CDate_std_Base::m_set_State, and CSerialObject::UnassignedByte().

Referenced by CDate_std::SetToTime().

SetMl() [1/2]

void CPerson_id_Base::SetMl

(

const TMl &

value

)

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 159 of file Person_id_.cpp.

References CPerson_id_Base::e_Ml, eDoNotResetVariant, CPerson_id_Base::m_string, CPerson_id_Base::Select(), and rapidjson::value.

SetMl() [2/2]

CPerson_id_Base::TMl & CPerson_id_Base::SetMl ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 378 of file Person_id_.hpp.

References CPerson_id_Base::e_Ml, eDoNotResetVariant, CPerson_id_Base::m_string, and CPerson_id_Base::Select().

Referenced by s_GetAuthorList().

SetMonth() [1/2]

void CDate_std_Base::SetMonth ( CDate_std_Base::TMonth  value )

inline

Assign a value to Month data member.

Parameters

value

Value to assign

Definition at line 482 of file Date_std_.hpp.

References CDate_std_Base::m_Month, CDate_std_Base::m_set_State, and rapidjson::value.

Referenced by BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), pub_report::CheckDate(), CSubSource::DateFromCollectionDate(), get_full_date(), get_lanl_date(), get_s_date(), CSubSource::GetDateFromISODate(), GetEmblDate(), CSeq_id_PDB_Info::GetPackedSeqId(), MakeBadSeasonDate(), s_GetDateFromArticleDate(), s_GetDateFromPubDate(), s_GetDateFromPubMedPubDate(), and CDemoHook::WriteObject().

SetMonth() [2/2]

CDate_std_Base::TMonth & CDate_std_Base::SetMonth ( void  )

inline

Assign a value to Month data member.

Returns

Reference to the data value.

Definition at line 489 of file Date_std_.hpp.

References CDate_std_Base::IsSetMonth(), CDate_std_Base::m_Month, CDate_std_Base::m_set_State, and CSerialObject::UnassignedByte().

Referenced by CDate_std::SetToTime().

SetName() [1/2]

void CPerson_id_Base::SetName

(

CPerson_id_Base::TName &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 149 of file Person_id_.cpp.

References CObject::AddReference(), CPerson_id_Base::e_Name, CPerson_id_Base::m_choice, CPerson_id_Base::m_object, CPerson_id_Base::ResetSelection(), and rapidjson::value.

SetName() [2/2]

CPerson_id_Base::TName & CPerson_id_Base::SetName

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 143 of file Person_id_.cpp.

References CPerson_id_Base::e_Name, eDoNotResetVariant, CPerson_id_Base::m_object, and CPerson_id_Base::Select().

Referenced by get_std_auth(), IAuthorEditor::s_FixInitials(), IAuthorEditor::s_FixInitialsNew(), CReverseAuthorNames::x_ApplyToCAuth(), CFixAuthorInitials::x_ApplyToCAuth(), CFixAuthorCap::x_ApplyToCAuth(), CStripAuthorSuffix::x_ApplyToCAuth(), CRemoveAuthorConsortium::x_ApplyToCAuth(), CConvertAllAuthorToConsortium::x_ApplyToCAuth(), CConvertAuthorToConsortiumWhereConstraint::x_ApplyToCAuth(), CAuthor::x_ConvertMlToStandard(), and CMacroFunction_AuthorFix::x_MakeAuthorChanges().

SetNum() [1/2]

void CUser_field_Base::SetNum ( CUser_field_Base::TNum  value )

inline

Assign a value to Num data member.

Parameters

value

Value to assign

Definition at line 993 of file User_field_.hpp.

References CUser_field_Base::m_Num, CUser_field_Base::m_set_State, and rapidjson::value.

Referenced by CTable2AsnContext::AddUserTrack(), fta_create_user_field(), fta_get_dblink_user_object(), fta_get_project_user_object(), fta_get_user_field(), CEditingActionDescUserObject::Modify(), s_AddNewDBlinkValue(), s_AddNewUserField(), CCleanup::s_AddNumToUserField(), s_PackAsUserField(), s_SetDBLinkFieldVals(), CEditingActionDescUserObject::SetValue(), CUserFieldStringListValidator::TransferFromWindow(), CSplitDblinkQuals::x_ConvertStrToStrs(), and CSeqDBVol::x_GetAsnDefline().

SetNum() [2/2]

CUser_field_Base::TNum & CUser_field_Base::SetNum ( void  )

inline

Assign a value to Num data member.

Returns

Reference to the data value.

Definition at line 1000 of file User_field_.hpp.

References CUser_field_Base::IsSetNum(), CUser_field_Base::m_Num, CUser_field_Base::m_set_State, and CSerialObject::UnassignedByte().

Referenced by CUser_field::SetNumFromSize().

SetObject() [1/2]

void CUser_field_Base::C_Data::SetObject

(

TObject &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 188 of file User_field_.cpp.

References CObject::AddReference(), and rapidjson::value.

SetObject() [2/2]

CUser_field_Base::C_Data::TObject & CUser_field_Base::C_Data::SetObject

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 182 of file User_field_.cpp.

References eDoNotResetVariant.

Referenced by CUser_field::SetValue().

SetObjects()

CUser_field_Base::C_Data::TObjects & CUser_field_Base::C_Data::SetObjects ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 928 of file User_field_.hpp.

References eDoNotResetVariant.

Referenced by CUser_field::SetValue().

SetOs()

CUser_field_Base::C_Data::TOs & CUser_field_Base::C_Data::SetOs ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 802 of file User_field_.hpp.

References eDoNotResetVariant.

SetOss()

CUser_field_Base::C_Data::TOss & CUser_field_Base::C_Data::SetOss ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 888 of file User_field_.hpp.

References eDoNotResetVariant.

SetP_m() [1/2]

void CInt_fuzz_Base::SetP_m ( CInt_fuzz_Base::TP_m  value )

inline

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 596 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::e_P_m, eDoNotResetVariant, CInt_fuzz_Base::m_P_m, CInt_fuzz_Base::Select(), and rapidjson::value.

SetP_m() [2/2]

CInt_fuzz_Base::TP_m & CInt_fuzz_Base::SetP_m ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 589 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::e_P_m, eDoNotResetVariant, CInt_fuzz_Base::m_P_m, and CInt_fuzz_Base::Select().

Referenced by CInt_fuzz::Add(), CRangeWithFuzz::x_AddFuzz(), and x_Assign().

SetPct() [1/2]

void CInt_fuzz_Base::SetPct ( CInt_fuzz_Base::TPct  value )

inline

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 629 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::e_Pct, eDoNotResetVariant, CInt_fuzz_Base::m_Pct, CInt_fuzz_Base::Select(), and rapidjson::value.

SetPct() [2/2]

CInt_fuzz_Base::TPct & CInt_fuzz_Base::SetPct ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 622 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::e_Pct, eDoNotResetVariant, CInt_fuzz_Base::m_Pct, and CInt_fuzz_Base::Select().

Referenced by CInt_fuzz::Add(), CInt_fuzz::AssignTranslated(), CRangeWithFuzz::x_AddFuzz(), and x_Assign().

SetRange() [1/2]

void CInt_fuzz_Base::SetRange

(

CInt_fuzz_Base::TRange &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 171 of file Int_fuzz_.cpp.

References CObject::AddReference(), CInt_fuzz_Base::e_Range, CInt_fuzz_Base::m_choice, CInt_fuzz_Base::m_object, CInt_fuzz_Base::ResetSelection(), and rapidjson::value.

SetRange() [2/2]

CInt_fuzz_Base::TRange & CInt_fuzz_Base::SetRange

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 165 of file Int_fuzz_.cpp.

References CInt_fuzz_Base::e_Range, eDoNotResetVariant, CInt_fuzz_Base::m_object, and CInt_fuzz_Base::Select().

Referenced by CInt_fuzz::Add(), CInt_fuzz::AssignTranslated(), GetIntFuzzPtr(), CInt_fuzz::Negate(), CRangeWithFuzz::x_AddFuzz(), x_Assign(), variation_ref::CHgvsParser::x_fuzzy_pos(), variation::CHgvsParser::x_fuzzy_pos(), variation::CHgvsParser::x_general_pos(), variation_ref::CHgvsParser::x_int_fuzz(), variation::CHgvsParser::x_int_fuzz(), CMappingRange::x_Map_Fuzz(), and xgbload_number().

SetReal() [1/2]

void CUser_field_Base::C_Data::SetReal ( TReal  value )

inline

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 755 of file User_field_.hpp.

References eDoNotResetVariant, and rapidjson::value.

SetReal() [2/2]

CUser_field_Base::C_Data::TReal & CUser_field_Base::C_Data::SetReal ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 748 of file User_field_.hpp.

References eDoNotResetVariant.

Referenced by CUser_field::SetDouble().

SetReals()

CUser_field_Base::C_Data::TReals & CUser_field_Base::C_Data::SetReals ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 868 of file User_field_.hpp.

References eDoNotResetVariant.

Referenced by CUser_field::SetValue().

SetSeason() [1/3]

void CDate_std_Base::SetSeason ( const TSeason &  value )

inline

Assign a value to Season data member.

Parameters

value

Value to assign

Definition at line 569 of file Date_std_.hpp.

References CDate_std_Base::m_Season, CDate_std_Base::m_set_State, and rapidjson::value.

Referenced by MakeBadSeasonDate(), and s_GetDateFromPubDate().

SetSeason() [2/3]

void CDate_std_Base::SetSeason ( CDate_std_Base::TSeason &&  value )

inline

Definition at line 576 of file Date_std_.hpp.

References CDate_std_Base::m_Season, CDate_std_Base::m_set_State, and rapidjson::value.

SetSeason() [3/3]

CDate_std_Base::TSeason & CDate_std_Base::SetSeason ( void  )

inline

Assign a value to Season data member.

Returns

Reference to the data value.

Definition at line 583 of file Date_std_.hpp.

References CDate_std_Base::IsSetSeason(), CDate_std_Base::m_Season, CDate_std_Base::m_set_State, and CSerialObject::UnassignedString().

SetSecond() [1/2]

void CDate_std_Base::SetSecond ( CDate_std_Base::TSecond  value )

inline

Assign a value to Second data member.

Parameters

value

Value to assign

Definition at line 717 of file Date_std_.hpp.

References CDate_std_Base::m_Second, CDate_std_Base::m_set_State, and rapidjson::value.

Referenced by CSeq_id_PDB_Info::GetPackedSeqId(), and s_GetDateFromPubMedPubDate().

SetSecond() [2/2]

CDate_std_Base::TSecond & CDate_std_Base::SetSecond ( void  )

inline

Assign a value to Second data member.

Returns

Reference to the data value.

Definition at line 724 of file Date_std_.hpp.

References CDate_std_Base::IsSetSecond(), CDate_std_Base::m_Second, CDate_std_Base::m_set_State, and CSerialObject::UnassignedByte().

Referenced by CDate_std::SetToTime().

SetStd() [1/2]

void CDate_Base::SetStd

(

CDate_Base::TStd &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 121 of file Date_.cpp.

References CObject::AddReference(), CDate_Base::e_Std, CDate_Base::m_choice, CDate_Base::m_object, CDate_Base::ResetSelection(), and rapidjson::value.

SetStd() [2/2]

CDate_Base::TStd & CDate_Base::SetStd

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 115 of file Date_.cpp.

References CDate_Base::e_Std, eDoNotResetVariant, CDate_Base::m_object, and CDate_Base::Select().

Referenced by BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), CSubSource::DateFromCollectionDate(), get_date(), get_lanl_date(), get_s_date(), get_sub(), get_sub_gsdb(), CSubSource::GetDateFromISODate(), GetEmblDescr(), GetGenBankDescr(), GetSPDate(), CPubField::GuessDate(), main(), MakeBadSeasonDate(), MakeDatePtr(), s_ChangeDate(), s_GetDateFromArticleDate(), s_GetDateFromPubDate(), s_GetDateFromPubMedPubDate(), CDate::SetToTime(), and XMLGetDescr().

SetStr() [1/8]

void CDate_Base::SetStr

(

const TStr &

value

)

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 103 of file Date_.cpp.

References CDate_Base::e_Str, eDoNotResetVariant, CDate_Base::m_string, CDate_Base::Select(), and rapidjson::value.

SetStr() [2/8]

void CObject_id_Base::SetStr

(

const TStr &

value

)

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 99 of file Object_id_.cpp.

References CObject_id_Base::e_Str, eDoNotResetVariant, CObject_id_Base::m_string, CObject_id_Base::Select(), and rapidjson::value.

SetStr() [3/8]

void CPerson_id_Base::SetStr

(

const TStr &

value

)

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 165 of file Person_id_.cpp.

References CPerson_id_Base::e_Str, eDoNotResetVariant, CPerson_id_Base::m_string, CPerson_id_Base::Select(), and rapidjson::value.

SetStr() [4/8]

void CUser_field_Base::C_Data::SetStr

(

const TStr &

value

)

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 170 of file User_field_.cpp.

References eDoNotResetVariant, and rapidjson::value.

SetStr() [5/8]

CDate_Base::TStr & CDate_Base::SetStr ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 313 of file Date_.hpp.

References CDate_Base::e_Str, eDoNotResetVariant, CDate_Base::m_string, and CDate_Base::Select().

Referenced by get_s_date(), main(), MakeDatePtr(), s_GetDateFromArticleDate(), s_GetDateFromPubMedPubDate(), CDate::SetToTime(), CPhrap_Read::x_CreateDesc(), and CCreateNeedlemanWunschJob::x_CreateProjectItems().

SetStr() [6/8]

CObject_id_Base::TStr & CObject_id_Base::SetStr ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 304 of file Object_id_.hpp.

References CObject_id_Base::e_Str, eDoNotResetVariant, CObject_id_Base::m_string, and CObject_id_Base::Select().

Referenced by CSeq_feat_EditHandle::AddFeatId(), CSeq_feat_EditHandle::AddFeatXref(), AgpRead(), AlignModelToSeqalign(), CSplignFormatter::AsSeqAlignSet(), CReadUtil::AsSeqId(), BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), BuildGenProdSetWithBigProduct(), BuildGoodGenProdSet(), BuildSmallGenomeSet(), CBioseq::CBioseq(), CFeat_CI::CFeat_CI(), CGeneralToLocalId::CGeneralToLocalId(), CNWFormatter::CNWFormatter(), CTableImportDataSource::ConvertToSeqAnnot(), CRemoveSeqId::CRemoveSeqId(), CSeq_id_Local_Info::CSeq_id_Local_Info(), SeqTreeAsnizer::fillAsnSeqTreeNode(), CSeqIdGenerator::GenerateID(), CPhrap_Seq::GetId(), CFeatureIdGenerator::GetIdFor(), CLocationListCtrl::GetIdFromForm(), GetNewLocalProtId(), CSeq_id_Local_Info::GetPackedSeqId(), GetProtRefSeqId(), CReadSharedObjectIdHookBase::GetSharedObject_id(), CGencollIdMapper::Guess(), CIdMapperConfig::Initialize(), MakeProteinForGoodNucProtSet(), MakeProteinForNucProtSet(), MakeSmallGenomeSetNucId(), PssmMaker::modifyQuery(), CPhyTreeView::OnSomethingEdited(), CChangePhyloSelectionSetCmd::PerformEdit(), CSeq_feat_EditHandle::RemoveFeatId(), CSeq_feat_EditHandle::RemoveFeatXref(), CSeq_id_General_Str_Info::Restore(), s_AddCDS(), s_AddGeneralAndLocal(), s_AssignObject_id(), s_GetArticleIdSet(), CAgpToSeqEntry::s_LocalSeqIdFromStr(), s_ReplaceLocalId(), s_SetFeatId(), s_StringToFeatId(), CPhyloSelectionSet::SaveToUserObject(), CTreeLabel::SaveToUserObject(), CClippedScorer::ScoreAlignments(), CObject_id::SetAsMatchingTo(), CUser_object::SetCategory(), CUser_object::SetExperiment(), CSeq_feat_EditHandle::SetFeatId(), CIdHandler::SetId(), CObject_id::SetId8(), CUser_object::SetObjectType(), CObject_id::SetStrOrId(), CTable2AsnContext::SetUserObject(), CEditingActionFeatTranscriptId::SetValue(), SetXrefObjId(), sx_GetObject_id(), sx_MakeUniqueId(), sx_SetTag(), TestBadProtId(), TestFeatInsideGap(), TestGoodNucId(), TestGoodProtId(), CRNAPanel::TransferDataFromWindow(), CIdMapperGCAssembly::x_AddAliasMappings(), CFeatureTableReader_Imp::x_AddQualifierToFeature(), CFeatureTableReader_Imp::x_AddQualifierToImp(), CSourceModParser::x_ApplyMods(), CGencollIdMapper::x_ApplyPatternToId(), x_Assign(), CEditSeqId::x_CollectChangedIds(), CSeq_id_Resolver__ChrNamesFromGC::x_Create(), CFeatureGenerator::SImplementation::x_CreateCdsFeature(), CFeatureGenerator::SImplementation::x_CreateGeneFeature(), CFeatureGenerator::SImplementation::x_CreateMrnaFeature(), CGencollIdMapper::x_FindChromosomeSequence(), CGencollIdMapper::x_FixImperfectId(), CSeqDBVol::x_GetAsnDefline(), CImportFeatTable::x_GetFixedId(), CGencollIdMapper::x_GetIdFromSeqAndSpec(), CCSraAlignIterator::x_GetObject_id(), x_GetObject_id(), CAccessionToLocalId::x_GetReplacementIds(), CSeq_loc_Mapper::x_IsUCSCRandomChr(), CGencollIdMapper::x_NCBI34_Map_IdFix(), CUnorderedSplitter::x_SplitDeltaExt(), CUnorderedSplitter::x_SplitSeqData(), CAttribTableColumnIdPanel::x_TableReaderMacro(), and CFeatTableEdit::xRenameFeatureId().

SetStr() [7/8]

CPerson_id_Base::TStr & CPerson_id_Base::SetStr ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 398 of file Person_id_.hpp.

References CPerson_id_Base::e_Str, eDoNotResetVariant, CPerson_id_Base::m_string, and CPerson_id_Base::Select().

SetStr() [8/8]

CUser_field_Base::C_Data::TStr & CUser_field_Base::C_Data::SetStr ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 701 of file User_field_.hpp.

References eDoNotResetVariant.

Referenced by CUser_field::SetString().

SetStrs()

CUser_field_Base::C_Data::TStrs & CUser_field_Base::C_Data::SetStrs ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 828 of file User_field_.hpp.

References eDoNotResetVariant.

Referenced by CUser_field::SetValue().

SetSuffix() [1/3]

void CName_std_Base::SetSuffix ( const TSuffix &  value )

inline

Assign a value to Suffix data member.

Parameters

value

Value to assign

Definition at line 666 of file Name_std_.hpp.

References CName_std_Base::m_set_State, CName_std_Base::m_Suffix, and rapidjson::value.

Referenced by NMacroUtil::ApplyAuthorNames(), fta_fix_last_initials(), CMacroFunction_AuthorFix::s_BuildName(), CCleanup::s_CleanupNameStdBC(), and CMacroFunction_AddPubAuthor::x_AddAuthor().

SetSuffix() [2/3]

void CName_std_Base::SetSuffix ( CName_std_Base::TSuffix &&  value )

inline

Definition at line 673 of file Name_std_.hpp.

References CName_std_Base::m_set_State, CName_std_Base::m_Suffix, and rapidjson::value.

SetSuffix() [3/3]

CName_std_Base::TSuffix & CName_std_Base::SetSuffix ( void  )

inline

Assign a value to Suffix data member.

Returns

Reference to the data value.

Definition at line 680 of file Name_std_.hpp.

References CName_std_Base::IsSetSuffix(), CName_std_Base::m_set_State, CName_std_Base::m_Suffix, and CSerialObject::UnassignedString().

Referenced by CName_std::ExtractSuffixFromLastName().

SetTag() [1/2]

void CDbtag_Base::SetTag

(

CDbtag_Base::TTag &

value

)

Assign a value to Tag data member.

Parameters

value

Reference to value.

Definition at line 66 of file Dbtag_.cpp.

References CDbtag_Base::m_Tag, and rapidjson::value.

Referenced by CSeq_feat::AddDbxref(), Sequence::AddMMDBAnnotTag(), CSrcTableDbxrefColumn::AddToBioSource(), CApplyFBOL::apply(), CBarcodeTool::ApplyDbxrefs(), BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), BuildGoodSegSet(), CLocalToGeneralId::CLocalToGeneralId(), CConvertImpToProt::Convert(), CNewCleanup_imp::DbtagBC(), CSeq_id_General_Tree::FindMatch(), CNewCleanup_imp::GBQualSeqFeatBC(), GetNewGeneralProtId(), CSeq_id_General_PlainInfo::GetPackedSeqId(), GetProtRefSeqId(), CSNPDbFeatIterator::GetSeq_feat(), CIdHandler::GnomonMRNA(), CIdHandler::GnomonProtein(), CCSraDb_Impl::MakeShortReadId(), PssmMaker::modifyQuery(), CNewCleanup_imp::MoveDbxrefs(), CProcessor::OffsetId(), CProcessor_ExtAnnot::Process(), CDUpdater::reformatBioseq(), CFindASN1Dlg::ReplaceInDbxref(), CSeq_id_General_Id_Info::Restore(), CSeq_id_General_Str_Info::Restore(), CAgpconvertApplication::Run(), s_AddGeneralAndLocal(), s_AssignDbtag(), variation::CVariationUtil::s_AttachGeneIDdbxref(), s_GetArticleIdSet(), CMacroFunction_MakeBoldXrefs::s_MakeBarcodeDbXref(), s_NewDbtagId(), s_ProcessOrgRefMapLine(), CSeq_id::Set(), SetDbxref(), CSeqTableSetDbxref::SetInt(), CSeqTableSetDbxref::SetInt8(), CTaxon2_data::SetProperty(), CSeqTableSetDbxref::SetString(), COrg_ref::SetTaxId(), CEditingActionBiosourceDbxref::SetValue(), CEditingActionFeatDbxref::SetValue(), StrToSeqId(), sx_MakeUniqueId(), TestTrimForFrame(), TryOneCDSCase(), CFeatureTableReader_Imp::x_AddQualifierToFeature(), CFeatureGenerator::SImplementation::x_AddSelectMarkup(), CSourceModParser::x_ApplyMods(), x_Assign(), CEditSeqId::x_CollectChangedIds(), CWriteDB_Impl::x_ExtractDeflines(), CWriteDB_Impl::x_GetFastaReaderDeflines(), CSeqDBVol::x_GetHdrAsn1(), CSeqDBVol::x_GetTaxonomy(), CGff2Reader::x_ParseDbtag(), CNewCleanup_imp::x_SplitDbtag(), SSNP_Info::x_UpdateSeq_featData(), CVcfReader::xAssignVariantProps(), and CGff3ImportData::xInitializeDbxref().

SetTag() [2/2]

CDbtag_Base::TTag & CDbtag_Base::SetTag ( void  )

inline

Assign a value to Tag data member.

Returns

Reference to the data value.

Definition at line 276 of file Dbtag_.hpp.

References CDbtag_Base::m_Tag, and CDbtag_Base::ResetTag().

Referenced by CDbtag::SetAsMatchingTo().

SetTitle() [1/3]

void CName_std_Base::SetTitle ( const TTitle &  value )

inline

Assign a value to Title data member.

Parameters

value

Value to assign

Definition at line 713 of file Name_std_.hpp.

References CName_std_Base::m_set_State, CName_std_Base::m_Title, and rapidjson::value.

SetTitle() [2/3]

void CName_std_Base::SetTitle ( CName_std_Base::TTitle &&  value )

inline

Definition at line 720 of file Name_std_.hpp.

References CName_std_Base::m_set_State, CName_std_Base::m_Title, and rapidjson::value.

SetTitle() [3/3]

CName_std_Base::TTitle & CName_std_Base::SetTitle ( void  )

inline

Assign a value to Title data member.

Returns

Reference to the data value.

Definition at line 727 of file Name_std_.hpp.

References CName_std_Base::IsSetTitle(), CName_std_Base::m_set_State, CName_std_Base::m_Title, and CSerialObject::UnassignedString().

SetType() [1/2]

void CUser_object_Base::SetType

(

CUser_object_Base::TType &

value

)

Assign a value to Type data member.

Parameters

value

Reference to value.

Definition at line 67 of file User_object_.cpp.

References CUser_object_Base::m_Type, and rapidjson::value.

Referenced by CWGSDb_Impl::AddMasterDescr(), AddTpaAssemblyUserObject(), CScoreBuilder::AddTracebacks(), CSegregateSetsBase::AddUserObject(), AlignModelToSeqalign(), CConvertComment::ApplyToComment(), CSplignFormatter::AsSeqAlignSet(), variation_ref::AttachAssertedSequence(), BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), CApplyObject::CApplyObject(), CTableImportDataSource::ConvertToSeqAnnot(), CAnnotationASN1::CImplementationData::create_internal_feature(), CAnnotationASN1::CImplementationData::create_ModelEvidence_user_object(), CSequenceEditingEventHandler::CreateDescriptor(), CBlastFormatUtil::CreateSeqAnnotFromSeqAlignSet(), CWigObjectLoader::Execute(), CBedAnnotAssembler::FinalizeAnnot(), fta_build_ena_user_object(), fta_build_structured_comment(), fta_create_far_fetch_policy_user_object(), fta_get_dblink_user_object(), fta_get_mga_user_object(), fta_get_project_user_object(), fta_get_user_object(), CAutoAddDBLink::Get(), CVDBGraphSeqIterator::GetAnnot(), CStructCommFieldValuePair::GetApplyObjects(), CWithdrawSequences::GetCommand(), CApplyStructCommentTreeItemData::GetMacroDescription(), CBamAlignIterator::GetMatchAlign(), CCSraAlignIterator::GetMatchAlign(), CSequesterSets::GetParams(), GetParams(), CSNPDbFeatIterator::GetSeq_feat(), CAssemblyTrackingPanel::GetUser_object(), CAuthorizedAccessPanel::GetUser_object(), CRefGeneTrackingPanel::GetUser_object(), CBedImportData::Initialize(), CLoadStructComments::LoadSingle(), CWig2tableApplication::MakeAnnot(), MakeCompartment(), CCSraAlignIterator::MakeMatchAnnotIndicator(), NMacroUtil::MakeNcbiAutofixUserObject(), CBam2Seq_graph::MakeSeq_annot(), CStructuredCommentField::MakeUserObject(), CAnnotationASN1::CImplementationData::model2spliced_seq_align(), CBioseqEditor::OnCreateDescriptor(), CSubPrep_panel::OnFlatfileClick(), CAssemblyTrackingPanel::OnImportIntervalsBtnClick(), CTableXformPanel::OnSaveImportParmsClick(), CPhyTreeView::OnSomethingEdited(), CRepeatToFeat::operator()(), PackAsUserObject(), CFastaReader::ParseDefLine(), CChangePhyloSelectionSetCmd::PerformEdit(), variation_ref::CVariationUtil::PrecursorToProt(), CTextViewProjectItemExtension::ProjectItemAttached(), CMicroArrayReader::ReadSeqAnnot(), CVcfReader::ReadSeqAnnot(), CDemoContigAssemblyApp::Run(), CDemoSeqQaApp::Run(), s_AddUserObjectToSeqAlign(), s_CreateSeqAlign(), s_ModifySeqAlnWithFilteredSeqIDs(), s_PopulateUserObject(), s_SetSeqdescUser(), s_UpdateSeqAlnWithFilteredSeqIDs(), CDockManager::SaveLayout(), CDockContainer::SaveLayout(), CPhyloSelectionSet::SaveToUserObject(), CTreeLabel::SaveToUserObject(), CGBProjectHandle::SaveViewSettings(), CGBenchService::SendAppFinish(), CGBenchService::SendAppStart(), CSeqUtils::SetAnnotShown(), CApplyStructCommentTreeItemData::SetData(), CProjectItemExtra::SetStr(), CTable2AsnContext::SetUserObject(), CEditingActionDescGenomeProjectId::SetValue(), CEditingActionDescUserObject::SetValue(), sWindowPosToUserObject(), sx_GetMatchAnnotIndicator(), sx_GetSecondaryIndicator(), sx_SetZoomLevel(), CMacroFunction_AddDBLink::TheFunction(), CBLASTParams::ToUserObject(), CNetBlastJobDescriptor::ToUserObject(), CDockContainerDescr::ToUserObject(), CBamUtils::UpdateCoverageGraphInfo(), CRelation::UserObjectFromRelation(), CTrackData::WriteToAnnot(), CFeatureTableReader_Imp::x_AddQualifierToImp(), CVariationUtilities::x_AddRefAlleleFixFlag(), CTableViewWithTextViewNav::x_CreateDefaultTextView(), CFeatureGenerator::SImplementation::x_CreateProteinBioseq(), SSNP_Info::x_CreateSeq_feat(), CSeqDBVol::x_GetAsnDefline(), CCSraAlignIterator::x_GetSecondaryIndicator(), CGraphTrack::x_OnJobCompleted(), CURLTooltipHandler::x_ParseGenomicLinkHref(), CShortReadFastaInputSource::x_ReadFastc(), CASN1InputSourceOMF::x_ReadFromSingleFile(), CASN1InputSourceOMF::x_ReadFromTwoFiles(), CSraInputSource::x_ReadPairs(), CNetBLASTUIDataSource::x_SaveJobDescriptors(), CFeatureGenerator::SImplementation::x_SetComment(), CVariationNormalization_base< T >::x_SetShiftFlag(), CDescrCache::x_SetUserType(), CAttribTableColumnIdPanel::x_TableReaderMacro(), CBLASTParams::x_ToUserObject(), SSNP_Info::x_UpdateSeq_featData(), CReaderBase::xAddConversionInfo(), CBedReader::xAssignBedColumnCount(), CGvfReader::xFeatureSetExt(), CGvfReader::xParseStructuredComment(), CVcfReader::xProcessDataLine(), CBedReader::xSetFeatureBedData(), CBedReader::xSetFeatureDisplayData(), CMicroArrayReader::xSetFeatureDisplayData(), CBedReader::xSetFeatureLocationBlock(), CBedReader::xSetFeatureLocationCds(), CBedReader::xSetFeatureLocationChrom(), CBedReader::xSetFeatureLocationGene(), CBedReader::xSetFeatureLocationRna(), and CBedReader::xSetFeatureLocationThick().

SetType() [2/2]

CUser_object_Base::TType & CUser_object_Base::SetType ( void  )

inline

Assign a value to Type data member.

Returns

Reference to the data value.

Definition at line 314 of file User_object_.hpp.

References CUser_object_Base::m_Type, and CUser_object_Base::ResetType().

Referenced by CUser_object::SetCategory(), CUser_object::SetExperiment(), and CUser_object::SetObjectType().

SetYear() [1/2]

void CDate_std_Base::SetYear ( CDate_std_Base::TYear  value )

inline

Assign a value to Year data member.

Parameters

value

Value to assign

Definition at line 435 of file Date_std_.hpp.

References CDate_std_Base::m_set_State, CDate_std_Base::m_Year, and rapidjson::value.

Referenced by BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), pub_report::CheckDate(), CSubSource::DateFromCollectionDate(), get_date(), get_full_date(), get_lanl_date(), get_s_date(), CSubSource::GetDateFromISODate(), GetEmblDate(), CSeq_id_PDB_Info::GetPackedSeqId(), CPubField::GuessDate(), main(), MakeBadSeasonDate(), s_ChangeDate(), s_GetDateFromArticleDate(), s_GetDateFromPubDate(), s_GetDateFromPubMedPubDate(), CDemoHook_std::WriteChoiceVariant(), CDemoHook::WriteObject(), and CMacroFunction_SetPubDate::x_AddDate().

SetYear() [2/2]

CDate_std_Base::TYear & CDate_std_Base::SetYear ( void  )

inline

Assign a value to Year data member.

Returns

Reference to the data value.

Definition at line 442 of file Date_std_.hpp.

References CDate_std_Base::IsSetYear(), CDate_std_Base::m_set_State, CDate_std_Base::m_Year, and CSerialObject::UnassignedByte().

Referenced by CDate_std::SetToTime().

ThrowInvalidSelection() [1/5]

void CDate_Base::ThrowInvalidSelection

(

E_Choice

index

)

const

Throw 'InvalidSelection' exception.

Parameters

index

Expected selection.

Definition at line 98 of file Date_.cpp.

References DIAG_COMPILE_INFO, CDate_Base::m_choice, and CDate_Base::sm_SelectionNames.

Referenced by CDate_Base::CheckSelected().

ThrowInvalidSelection() [2/5]

void CInt_fuzz_Base::ThrowInvalidSelection

(

E_Choice

index

)

const

Throw 'InvalidSelection' exception.

Parameters

index

Expected selection.

Definition at line 154 of file Int_fuzz_.cpp.

References DIAG_COMPILE_INFO, CInt_fuzz_Base::m_choice, and CInt_fuzz_Base::sm_SelectionNames.

Referenced by CInt_fuzz_Base::CheckSelected().

ThrowInvalidSelection() [3/5]

void CObject_id_Base::ThrowInvalidSelection

(

E_Choice

index

)

const

Throw 'InvalidSelection' exception.

Parameters

index

Expected selection.

Definition at line 94 of file Object_id_.cpp.

References DIAG_COMPILE_INFO, CObject_id_Base::m_choice, and CObject_id_Base::sm_SelectionNames.

Referenced by CObject_id_Base::CheckSelected().

ThrowInvalidSelection() [4/5]

void CPerson_id_Base::ThrowInvalidSelection

(

E_Choice

index

)

const

Throw 'InvalidSelection' exception.

Parameters

index

Expected selection.

Definition at line 110 of file Person_id_.cpp.

References DIAG_COMPILE_INFO, CPerson_id_Base::m_choice, and CPerson_id_Base::sm_SelectionNames.

Referenced by CPerson_id_Base::CheckSelected().

ThrowInvalidSelection() [5/5]

void CUser_field_Base::C_Data::ThrowInvalidSelection

(

E_Choice

index

)

const

Throw 'InvalidSelection' exception.

Parameters

index

Expected selection.

Definition at line 165 of file User_field_.cpp.

References DIAG_COMPILE_INFO.

Which() [1/5]

CDate_Base::E_Choice CDate_Base::Which ( void  ) const

inline

Which variant is currently selected.

Returns

Choice state enumerator.

Definition at line 271 of file Date_.hpp.

References CDate_Base::m_choice.

Referenced by CDate::AsCTime(), CheckSegDescrChoice(), CDate::GetDate(), MakeDatePtr(), s_CompareDates(), s_GetLaterDate(), CDate::SetToTime(), CValidError_imp::ValidatePubArticleNoPMID(), and CLocusItem::x_GetLaterDate().

Which() [2/5]

CInt_fuzz_Base::E_Choice CInt_fuzz_Base::Which ( void  ) const

inline

Which variant is currently selected.

Returns

Choice state enumerator.

Definition at line 547 of file Int_fuzz_.hpp.

References CInt_fuzz_Base::m_choice.

Referenced by variation::ApplyOffsetFuzz(), CInt_fuzz::AssignTranslated(), CInt_fuzz::GetLabel(), CInt_fuzz::Negate(), SeqIntPartialCheck(), SeqLocPartialCheck(), CFlatSeqLoc::x_Add(), CRangeWithFuzz::x_AddFuzz(), x_Assign(), CGvfWriteRecord::x_AssignAttributeEndRange(), CGvfWriteRecord::x_AssignAttributeStartRange(), and CMappingRange::x_Map_Fuzz().

Which() [3/5]

CObject_id_Base::E_Choice CObject_id_Base::Which ( void  ) const

inline

Which variant is currently selected.

Returns

Choice state enumerator.

Definition at line 235 of file Object_id_.hpp.

References CObject_id_Base::m_choice.

Referenced by CObject_id::AsString(), CSeq_id_General_Tree::FindInfo(), CSeq_id_General_Tree::FindOrCreate(), CObject_id::GetIdType(), CFeatComparatorByLabel::Less(), OjectIdsAreEqual(), CPhyTreeView::OnSomethingEdited(), SSNP_Info::ParseSeq_feat(), CChangePhyloSelectionSetCmd::PerformEdit(), s_Fingerprint_Object_id(), s_PopulateUserObject(), s_UnpackUserField(), CSeq_id::Set(), CObject_id::SetAsMatchingTo(), CFeatureItem::x_AddFTableDbxref(), x_Assign(), CLocalIdComment::x_GatherInfo(), CFileIdComment::x_GatherInfo(), CAlignmentSmear::x_GetAnnotName(), CBioseq_set_Info::x_GetBioseq_set_Id(), CSrcWriter::xGatherDb(), and CSrcWriter::xGatherTaxonId().

Which() [4/5]

CPerson_id_Base::E_Choice CPerson_id_Base::Which ( void  ) const

inline

Which variant is currently selected.

Returns

Choice state enumerator.

Definition at line 324 of file Person_id_.hpp.

References CPerson_id_Base::m_choice.

Referenced by GetAuthorString(), CPerson_id::GetLabel(), CAuthor::GetLabelV2(), and SAuthorEmpty::operator()().

Which() [5/5]

CUser_field_Base::C_Data::E_Choice CUser_field_Base::C_Data::Which ( void  ) const

inline

Which variant is currently selected.

Returns

Choice state enumerator.

Definition at line 659 of file User_field_.hpp.

References CUser_field_Base::C_Data::m_choice.

Referenced by CRegistryFile::FromConfigFile(), CAnnotObject_Info::GetLocsTypes(), CEditingActionDescUserObject::Modify(), CEditingActionDescLocalId::Modify(), CEditingActionDescComment::Modify(), SSNP_Info::ParseSeq_feat(), CCleanup::s_AddNumToUserField(), s_ExtractKeys(), s_ScanRecursive(), CUser_field::SetFieldRef(), CDBLinkField::SetVal(), CStructuredCommentField::SetVal(), CCleanup::x_CleanupUserField(), and CAlignmentSmear::x_GetAnnotName().

~C_Data()

CUser_field_Base::C_Data::~C_Data

(

void

)

Definition at line 229 of file User_field_.cpp.

References CUser_field_Base::Reset().

~C_Range()

CInt_fuzz_Base::C_Range::~C_Range

(

void

)

Definition at line 76 of file Int_fuzz_.cpp.

~CDate_Base()

CDate_Base::~CDate_Base ( void  )

virtual

Definition at line 151 of file Date_.cpp.

References CDate_Base::Reset().

~CDate_std_Base()

CDate_std_Base::~CDate_std_Base ( void  )

virtual

Definition at line 91 of file Date_std_.cpp.

~CDbtag_Base()

CDbtag_Base::~CDbtag_Base ( void  )

virtual

Definition at line 98 of file Dbtag_.cpp.

~CInt_fuzz_Base()

CInt_fuzz_Base::~CInt_fuzz_Base ( void  )

virtual

Definition at line 204 of file Int_fuzz_.cpp.

References CInt_fuzz_Base::Reset().

~CName_std_Base()

CName_std_Base::~CName_std_Base ( void  )

virtual

Definition at line 126 of file Name_std_.cpp.

~CObject_id_Base()

CObject_id_Base::~CObject_id_Base ( void  )

virtual

Definition at line 125 of file Object_id_.cpp.

References CObject_id_Base::Reset().

~CPerson_id_Base()

CPerson_id_Base::~CPerson_id_Base ( void  )

virtual

Definition at line 200 of file Person_id_.cpp.

References CPerson_id_Base::Reset().

~CUser_field_Base()

CUser_field_Base::~CUser_field_Base ( void  )

virtual

Definition at line 294 of file User_field_.cpp.

~CUser_object_Base()

CUser_object_Base::~CUser_object_Base ( void  )

virtual

Definition at line 107 of file User_object_.cpp.

Variable Documentation

union { ... }

union { ... }

union { ... }

union { ... }

union { ... }

m_Alt [1/2]

NCBI_NS_NCBI::CUnionBuffer<TAlt> CInt_fuzz_Base::m_Alt

Definition at line 438 of file Int_fuzz_.hpp.

Referenced by BEGIN_NAMED_BASE_CHOICE_INFO(), CInt_fuzz_Base::DoSelect(), CInt_fuzz_Base::GetAlt(), CInt_fuzz_Base::ResetSelection(), and CInt_fuzz_Base::SetAlt().

[2/2]

NCBI_NS_NCBI::CUnionBuffer<TAlt> { ... } ::m_Alt

Definition at line 438 of file Int_fuzz_.hpp.

m_Bool [1/2]

TBool CUser_field_Base::C_Data::m_Bool

Definition at line 491 of file User_field_.hpp.

[2/2]

TBool { ... } ::m_Bool

Definition at line 491 of file User_field_.hpp.

m_choice [1/5]

E_Choice CDate_Base::m_choice

private

Definition at line 249 of file Date_.hpp.

Referenced by CDate_Base::CheckSelected(), CDate_Base::DoSelect(), CDate_Base::IsStd(), CDate_Base::IsStr(), CDate_Base::Reset(), CDate_Base::ResetSelection(), CDate_Base::SetStd(), CDate_Base::ThrowInvalidSelection(), and CDate_Base::Which().

m_choice [2/5]

E_Choice CInt_fuzz_Base::m_choice

private

Definition at line 428 of file Int_fuzz_.hpp.

Referenced by CInt_fuzz_Base::CheckSelected(), CInt_fuzz_Base::DoSelect(), CInt_fuzz_Base::IsAlt(), CInt_fuzz_Base::IsLim(), CInt_fuzz_Base::IsP_m(), CInt_fuzz_Base::IsPct(), CInt_fuzz_Base::IsRange(), CInt_fuzz_Base::Reset(), CInt_fuzz_Base::ResetSelection(), CInt_fuzz_Base::SetRange(), CInt_fuzz_Base::ThrowInvalidSelection(), and CInt_fuzz_Base::Which().

m_choice [3/5]

E_Choice CObject_id_Base::m_choice

private

Definition at line 212 of file Object_id_.hpp.

Referenced by CObject_id_Base::CheckSelected(), CObject_id_Base::DoSelect(), CObject_id_Base::IsId(), CObject_id_Base::IsStr(), CObject_id_Base::Reset(), CObject_id_Base::ResetSelection(), CObject_id_Base::ThrowInvalidSelection(), and CObject_id_Base::Which().

m_choice [4/5]

E_Choice CPerson_id_Base::m_choice

private

Definition at line 302 of file Person_id_.hpp.

Referenced by CPerson_id_Base::CheckSelected(), CPerson_id_Base::DoSelect(), CPerson_id_Base::IsConsortium(), CPerson_id_Base::IsDbtag(), CPerson_id_Base::IsMl(), CPerson_id_Base::IsName(), CPerson_id_Base::IsStr(), CPerson_id_Base::Reset(), CPerson_id_Base::ResetSelection(), CPerson_id_Base::SetDbtag(), CPerson_id_Base::SetName(), CPerson_id_Base::ThrowInvalidSelection(), and CPerson_id_Base::Which().

m_choice [5/5]

E_Choice CUser_field_Base::C_Data::m_choice

private

Definition at line 482 of file User_field_.hpp.

Referenced by CUser_field_Base::C_Data::Reset(), and CUser_field_Base::C_Data::Which().

m_Class

string CUser_object_Base::m_Class

private

Definition at line 231 of file User_object_.hpp.

Referenced by CUser_object_Base::GetClass(), CUser_object_Base::ResetClass(), and CUser_object_Base::SetClass().

m_Data [1/2]

CRef< TData > CUser_field_Base::m_Data

private

Definition at line 646 of file User_field_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CUser_field_Base::GetData(), CUser_field_Base::IsSetData(), CUser_field_Base::ResetData(), and CUser_field_Base::SetData().

m_Data [2/2]

vector< CRef< CUser_field > > CUser_object_Base::m_Data

private

Definition at line 233 of file User_object_.hpp.

Referenced by CUser_object_Base::GetData(), CUser_object_Base::ResetData(), and CUser_object_Base::SetData().

m_Day

int CDate_std_Base::m_Day

private

Definition at line 390 of file Date_std_.hpp.

Referenced by CDate_std_Base::GetDay(), CDate_std_Base::ResetDay(), and CDate_std_Base::SetDay().

m_Db

string CDbtag_Base::m_Db

private

Definition at line 194 of file Dbtag_.hpp.

Referenced by CDbtag_Base::GetDb(), CDbtag_Base::ResetDb(), and CDbtag_Base::SetDb().

m_dummy_pointer_for_alignment [1/2]

void* CObject_id_Base::m_dummy_pointer_for_alignment

Definition at line 221 of file Object_id_.hpp.

[2/2]

void* { ... } ::m_dummy_pointer_for_alignment

Definition at line 221 of file Object_id_.hpp.

m_Fields [1/2]

NCBI_NS_NCBI::CUnionBuffer<TFields> CUser_field_Base::C_Data::m_Fields

Definition at line 497 of file User_field_.hpp.

[2/2]

NCBI_NS_NCBI::CUnionBuffer<TFields> { ... } ::m_Fields

Definition at line 497 of file User_field_.hpp.

m_First

string CName_std_Base::m_First

private

Definition at line 392 of file Name_std_.hpp.

Referenced by CName_std_Base::GetFirst(), CName_std_Base::ResetFirst(), and CName_std_Base::SetFirst().

m_Full

string CName_std_Base::m_Full

private

Definition at line 394 of file Name_std_.hpp.

Referenced by CName_std_Base::GetFull(), CName_std_Base::ResetFull(), and CName_std_Base::SetFull().

m_Hour

int CDate_std_Base::m_Hour

private

Definition at line 392 of file Date_std_.hpp.

Referenced by CDate_std_Base::GetHour(), CDate_std_Base::ResetHour(), and CDate_std_Base::SetHour().

m_Id [1/2]

TId CObject_id_Base::m_Id

Definition at line 219 of file Object_id_.hpp.

Referenced by CObject_id_Base::DoSelect(), CObject_id_Base::GetId(), and CObject_id_Base::SetId().

[2/2]

TId { ... } ::m_Id

Definition at line 219 of file Object_id_.hpp.

m_Initials

string CName_std_Base::m_Initials

private

Definition at line 395 of file Name_std_.hpp.

Referenced by CName_std_Base::GetInitials(), CName_std_Base::ResetInitials(), and CName_std_Base::SetInitials().

m_Int [1/2]

TInt CUser_field_Base::C_Data::m_Int

Definition at line 489 of file User_field_.hpp.

[2/2]

TInt { ... } ::m_Int

Definition at line 489 of file User_field_.hpp.

m_Ints [1/2]

NCBI_NS_NCBI::CUnionBuffer<TInts> CUser_field_Base::C_Data::m_Ints

Definition at line 494 of file User_field_.hpp.

[2/2]

NCBI_NS_NCBI::CUnionBuffer<TInts> { ... } ::m_Ints

Definition at line 494 of file User_field_.hpp.

m_Label

CRef< TLabel > CUser_field_Base::m_Label

private

Definition at line 644 of file User_field_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CUser_field_Base::GetLabel(), CUser_field_Base::IsSetLabel(), CUser_field_Base::ResetLabel(), and CUser_field_Base::SetLabel().

m_Last

string CName_std_Base::m_Last

private

Definition at line 391 of file Name_std_.hpp.

Referenced by CName_std_Base::GetLast(), CName_std_Base::ResetLast(), and CName_std_Base::SetLast().

[1/2]

TLim { ... } ::m_Lim

Definition at line 437 of file Int_fuzz_.hpp.

m_Lim [2/2]

TLim CInt_fuzz_Base::m_Lim

Definition at line 437 of file Int_fuzz_.hpp.

Referenced by BEGIN_NAMED_BASE_CHOICE_INFO(), CInt_fuzz_Base::DoSelect(), CInt_fuzz_Base::GetLim(), and CInt_fuzz_Base::SetLim().

m_Max

TSeqPos CInt_fuzz_Base::C_Range::m_Max

private

Definition at line 205 of file Int_fuzz_.hpp.

m_Middle

string CName_std_Base::m_Middle

private

Definition at line 393 of file Name_std_.hpp.

Referenced by CName_std_Base::GetMiddle(), CName_std_Base::ResetMiddle(), and CName_std_Base::SetMiddle().

m_Min

TSeqPos CInt_fuzz_Base::C_Range::m_Min

private

Definition at line 206 of file Int_fuzz_.hpp.

m_Minute

int CDate_std_Base::m_Minute

private

Definition at line 393 of file Date_std_.hpp.

Referenced by CDate_std_Base::GetMinute(), CDate_std_Base::ResetMinute(), and CDate_std_Base::SetMinute().

m_Month

int CDate_std_Base::m_Month

private

Definition at line 389 of file Date_std_.hpp.

Referenced by CDate_std_Base::GetMonth(), CDate_std_Base::ResetMonth(), and CDate_std_Base::SetMonth().

m_Num

int CUser_field_Base::m_Num

private

Definition at line 645 of file User_field_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CUser_field_Base::GetNum(), CUser_field_Base::ResetNum(), and CUser_field_Base::SetNum().

m_object [1/8]

NCBI_NS_NCBI::CSerialObject* CDate_Base::m_object

Definition at line 257 of file Date_.hpp.

Referenced by CDate_Base::DoSelect(), CDate_Base::GetStd(), CDate_Base::ResetSelection(), and CDate_Base::SetStd().

[2/8]

NCBI_NS_NCBI::CSerialObject* { ... } ::m_object

Definition at line 257 of file Date_.hpp.

[3/8]

NCBI_NS_NCBI::CSerialObject* { ... } ::m_object

Definition at line 439 of file Int_fuzz_.hpp.

m_object [4/8]

NCBI_NS_NCBI::CSerialObject* CInt_fuzz_Base::m_object

Definition at line 439 of file Int_fuzz_.hpp.

Referenced by BEGIN_NAMED_BASE_CHOICE_INFO(), CInt_fuzz_Base::DoSelect(), CInt_fuzz_Base::GetRange(), CInt_fuzz_Base::ResetSelection(), and CInt_fuzz_Base::SetRange().

[5/8]

NCBI_NS_NCBI::CSerialObject* { ... } ::m_object

Definition at line 310 of file Person_id_.hpp.

m_object [6/8]

NCBI_NS_NCBI::CSerialObject* CPerson_id_Base::m_object

Definition at line 310 of file Person_id_.hpp.

Referenced by CPerson_id_Base::DoSelect(), CPerson_id_Base::GetDbtag(), CPerson_id_Base::GetName(), CPerson_id_Base::ResetSelection(), CPerson_id_Base::SetDbtag(), and CPerson_id_Base::SetName().

m_object [7/8]

NCBI_NS_NCBI::CSerialObject* CUser_field_Base::C_Data::m_object

Definition at line 500 of file User_field_.hpp.

[8/8]

NCBI_NS_NCBI::CSerialObject* { ... } ::m_object

Definition at line 500 of file User_field_.hpp.

[1/2]

NCBI_NS_NCBI::CUnionBuffer<TObjects> { ... } ::m_Objects

Definition at line 498 of file User_field_.hpp.

m_Objects [2/2]

NCBI_NS_NCBI::CUnionBuffer<TObjects> CUser_field_Base::C_Data::m_Objects

Definition at line 498 of file User_field_.hpp.

m_Os [1/2]

NCBI_NS_NCBI::CUnionBuffer<TOs> CUser_field_Base::C_Data::m_Os

Definition at line 492 of file User_field_.hpp.

[2/2]

NCBI_NS_NCBI::CUnionBuffer<TOs> { ... } ::m_Os

Definition at line 492 of file User_field_.hpp.

m_Oss [1/2]

NCBI_NS_NCBI::CUnionBuffer<TOss> CUser_field_Base::C_Data::m_Oss

Definition at line 496 of file User_field_.hpp.

[2/2]

NCBI_NS_NCBI::CUnionBuffer<TOss> { ... } ::m_Oss

Definition at line 496 of file User_field_.hpp.

m_P_m [1/2]

TP_m CInt_fuzz_Base::m_P_m

Definition at line 435 of file Int_fuzz_.hpp.

Referenced by BEGIN_NAMED_BASE_CHOICE_INFO(), CInt_fuzz_Base::DoSelect(), CInt_fuzz_Base::GetP_m(), and CInt_fuzz_Base::SetP_m().

[2/2]

TP_m { ... } ::m_P_m

Definition at line 435 of file Int_fuzz_.hpp.

m_Pct [1/2]

TPct CInt_fuzz_Base::m_Pct

Definition at line 436 of file Int_fuzz_.hpp.

Referenced by BEGIN_NAMED_BASE_CHOICE_INFO(), CInt_fuzz_Base::DoSelect(), CInt_fuzz_Base::GetPct(), and CInt_fuzz_Base::SetPct().

[2/2]

TPct { ... } ::m_Pct

Definition at line 436 of file Int_fuzz_.hpp.

[1/2]

TReal { ... } ::m_Real

Definition at line 490 of file User_field_.hpp.

m_Real [2/2]

TReal CUser_field_Base::C_Data::m_Real

Definition at line 490 of file User_field_.hpp.

m_Reals [1/2]

NCBI_NS_NCBI::CUnionBuffer<TReals> CUser_field_Base::C_Data::m_Reals

Definition at line 495 of file User_field_.hpp.

[2/2]

NCBI_NS_NCBI::CUnionBuffer<TReals> { ... } ::m_Reals

Definition at line 495 of file User_field_.hpp.

m_Season

string CDate_std_Base::m_Season

private

Definition at line 391 of file Date_std_.hpp.

Referenced by CDate_std_Base::GetSeason(), CDate_std_Base::ResetSeason(), and CDate_std_Base::SetSeason().

m_Second

int CDate_std_Base::m_Second

private

Definition at line 394 of file Date_std_.hpp.

Referenced by CDate_std_Base::GetSecond(), CDate_std_Base::ResetSecond(), and CDate_std_Base::SetSecond().

m_set_State [1/6]

Uint4 CDate_std_Base::m_set_State[1]

private

Definition at line 387 of file Date_std_.hpp.

Referenced by CDate_std_Base::CDate_std_Base(), CDate_std_Base::IsSetDay(), CDate_std_Base::IsSetHour(), CDate_std_Base::IsSetMinute(), CDate_std_Base::IsSetMonth(), CDate_std_Base::IsSetSeason(), CDate_std_Base::IsSetSecond(), CDate_std_Base::IsSetYear(), CDate_std_Base::ResetDay(), CDate_std_Base::ResetHour(), CDate_std_Base::ResetMinute(), CDate_std_Base::ResetMonth(), CDate_std_Base::ResetSeason(), CDate_std_Base::ResetSecond(), CDate_std_Base::ResetYear(), CDate_std_Base::SetDay(), CDate_std_Base::SetHour(), CDate_std_Base::SetMinute(), CDate_std_Base::SetMonth(), CDate_std_Base::SetSeason(), CDate_std_Base::SetSecond(), and CDate_std_Base::SetYear().

m_set_State [2/6]

Uint4 CDbtag_Base::m_set_State[1]

private

Definition at line 193 of file Dbtag_.hpp.

Referenced by CDbtag_Base::CDbtag_Base(), CDbtag_Base::IsSetDb(), CDbtag_Base::ResetDb(), and CDbtag_Base::SetDb().

m_set_State [3/6]

Uint4 CInt_fuzz_Base::C_Range::m_set_State[1]

private

Definition at line 204 of file Int_fuzz_.hpp.

Referenced by CInt_fuzz_Base::C_Range::C_Range(), and CInt_fuzz_Base::C_Range::IsSetMax().

m_set_State [4/6]

Uint4 CName_std_Base::m_set_State[1]

private

Definition at line 390 of file Name_std_.hpp.

Referenced by CName_std_Base::CName_std_Base(), CName_std_Base::IsSetFirst(), CName_std_Base::IsSetFull(), CName_std_Base::IsSetInitials(), CName_std_Base::IsSetLast(), CName_std_Base::IsSetMiddle(), CName_std_Base::IsSetSuffix(), CName_std_Base::IsSetTitle(), CName_std_Base::ResetFirst(), CName_std_Base::ResetFull(), CName_std_Base::ResetInitials(), CName_std_Base::ResetLast(), CName_std_Base::ResetMiddle(), CName_std_Base::ResetSuffix(), CName_std_Base::ResetTitle(), CName_std_Base::SetFirst(), CName_std_Base::SetFull(), CName_std_Base::SetInitials(), CName_std_Base::SetLast(), CName_std_Base::SetMiddle(), CName_std_Base::SetSuffix(), and CName_std_Base::SetTitle().

m_set_State [5/6]

Uint4 CUser_field_Base::m_set_State[1]

private

Definition at line 643 of file User_field_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CUser_field_Base::CUser_field_Base(), CUser_field_Base::IsSetNum(), CUser_field_Base::ResetNum(), and CUser_field_Base::SetNum().

m_set_State [6/6]

Uint4 CUser_object_Base::m_set_State[1]

private

Definition at line 230 of file User_object_.hpp.

Referenced by CUser_object_Base::CUser_object_Base(), CUser_object_Base::IsSetClass(), CUser_object_Base::IsSetData(), CUser_object_Base::ResetClass(), CUser_object_Base::ResetData(), CUser_object_Base::SetClass(), and CUser_object_Base::SetData().

m_string [1/6]

NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string> CDate_Base::m_string

Definition at line 256 of file Date_.hpp.

Referenced by CDate_Base::DoSelect(), CDate_Base::GetStr(), CDate_Base::ResetSelection(), and CDate_Base::SetStr().

[2/6]

NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string> { ... } ::m_string

Definition at line 256 of file Date_.hpp.

[3/6]

NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string> { ... } ::m_string

Definition at line 220 of file Object_id_.hpp.

m_string [4/6]

NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string> CObject_id_Base::m_string

Definition at line 220 of file Object_id_.hpp.

Referenced by CObject_id_Base::DoSelect(), CObject_id_Base::GetStr(), CObject_id_Base::ResetSelection(), and CObject_id_Base::SetStr().

m_string [5/6]

NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string> CPerson_id_Base::m_string

Definition at line 309 of file Person_id_.hpp.

Referenced by CPerson_id_Base::DoSelect(), CPerson_id_Base::GetConsortium(), CPerson_id_Base::GetMl(), CPerson_id_Base::GetStr(), CPerson_id_Base::ResetSelection(), CPerson_id_Base::SetConsortium(), CPerson_id_Base::SetMl(), and CPerson_id_Base::SetStr().

[6/6]

NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string> { ... } ::m_string

Definition at line 309 of file Person_id_.hpp.

m_string_utf8 [1/2]

NCBI_NS_NCBI::CUnionBuffer<CStringUTF8> CUser_field_Base::C_Data::m_string_utf8

Definition at line 499 of file User_field_.hpp.

[2/2]

NCBI_NS_NCBI::CUnionBuffer<CStringUTF8> { ... } ::m_string_utf8

Definition at line 499 of file User_field_.hpp.

[1/2]

NCBI_NS_NCBI::CUnionBuffer<TStrs> { ... } ::m_Strs

Definition at line 493 of file User_field_.hpp.

m_Strs [2/2]

NCBI_NS_NCBI::CUnionBuffer<TStrs> CUser_field_Base::C_Data::m_Strs

Definition at line 493 of file User_field_.hpp.

m_Suffix

string CName_std_Base::m_Suffix

private

Definition at line 396 of file Name_std_.hpp.

Referenced by CName_std_Base::GetSuffix(), CName_std_Base::ResetSuffix(), and CName_std_Base::SetSuffix().

m_Tag

CRef< TTag > CDbtag_Base::m_Tag

private

Definition at line 195 of file Dbtag_.hpp.

Referenced by CDbtag_Base::GetTag(), CDbtag_Base::IsSetTag(), CDbtag_Base::ResetTag(), and CDbtag_Base::SetTag().

m_Title

string CName_std_Base::m_Title

private

Definition at line 397 of file Name_std_.hpp.

Referenced by CName_std_Base::GetTitle(), CName_std_Base::ResetTitle(), and CName_std_Base::SetTitle().

m_Type

CRef< TType > CUser_object_Base::m_Type

private

Definition at line 232 of file User_object_.hpp.

Referenced by CUser_object_Base::GetType(), CUser_object_Base::IsSetType(), CUser_object_Base::ResetType(), and CUser_object_Base::SetType().

m_Year

int CDate_std_Base::m_Year

private

Definition at line 388 of file Date_std_.hpp.

Referenced by CDate_std_Base::GetYear(), CDate_std_Base::ResetYear(), and CDate_std_Base::SetYear().

sm_SelectionNames [1/5]

const char *const CDate_Base::sm_SelectionNames

staticprivate

Initial value:

= {
    "not set",
    "str",
    "std"
}

Definition at line 253 of file Date_.hpp.

Referenced by CDate_Base::SelectionName(), and CDate_Base::ThrowInvalidSelection().

sm_SelectionNames [2/5]

const char *const CInt_fuzz_Base::sm_SelectionNames

staticprivate

Initial value:

= {
    "not set",
    "p-m",
    "range",
    "pct",
    "lim",
    "alt"
}

Definition at line 432 of file Int_fuzz_.hpp.

Referenced by CInt_fuzz_Base::SelectionName(), and CInt_fuzz_Base::ThrowInvalidSelection().

sm_SelectionNames [3/5]

const char *const CObject_id_Base::sm_SelectionNames

staticprivate

Initial value:

= {
    "not set",
    "id",
    "str"
}

Definition at line 216 of file Object_id_.hpp.

Referenced by CObject_id_Base::SelectionName(), and CObject_id_Base::ThrowInvalidSelection().

sm_SelectionNames [4/5]

const char *const CPerson_id_Base::sm_SelectionNames

staticprivate

Initial value:

= {
    "not set",
    "dbtag",
    "name",
    "ml",
    "str",
    "consortium"
}

Definition at line 306 of file Person_id_.hpp.

Referenced by CPerson_id_Base::SelectionName(), and CPerson_id_Base::ThrowInvalidSelection().

sm_SelectionNames [5/5]

const char *const CUser_field_Base::C_Data::sm_SelectionNames

staticprivate

Initial value:

= {
    "not set",
    "str",
    "int",
    "real",
    "bool",
    "os",
    "object",
    "strs",
    "ints",
    "reals",
    "oss",
    "fields",
    "objects"
}

Definition at line 486 of file User_field_.hpp.