Code generated by DATATOOL from 'genome_collection.asn' (module 'NCBI-GenomeCollection')

Collaboration diagram for Code generated by DATATOOL from 'genome_collection.asn' (module 'NCBI-GenomeCollection'):

Classes
class	CGC_Assemblies
	CGC_Assemblies –. More...
class	CGC_Assemblies_Base
	CGC_Assemblies_Base –. More...
class	CGC_Assembly_Base
	A GC-Assembly is either a single assembly unit or it is a set of assemblies. More...
class	CGC_AssemblyDesc
	CGC_AssemblyDesc –. More...
class	CGC_AssemblyDesc_Base
	CGC_AssemblyDesc_Base –. More...
class	CGC_AssemblySet_Base
	CGC_AssemblySet_Base –. More...
class	CGC_AssemblyUnit_Base
	CGC_AssemblyUnit_Base –. More...
class	CGC_DbTagAlias
	CGC_DbTagAlias –. More...
class	CGC_DbTagAlias_Base
class	CGC_External_Seqid
	CGC_External_Seqid –. More...
class	CGC_External_Seqid_Base
	CGC_External_Seqid_Base –. More...
class	CGC_Genome
	CGC_Genome –. More...
class	CGC_Genome_Base
	CGC_Genome_Base –. More...
class	CGC_GenomicPart
	CGC_GenomicPart –. More...
class	CGC_GenomicPart_Base
	CGC_GenomicPart_Base –. More...
class	CGC_Project
	CGC_Project –. More...
class	CGC_Project_Base
	CGC_Project_Base –. More...
class	CGC_Query
	CGC_Query –. More...
class	CGC_Query_Base
	A GC-Assemblies is a mere set of assemblies. More...
class	CGC_Replicon_Base
	CGC_Replicon_Base –. More...
class	CGC_Replicon_Base::C_Sequence
	the sequence(s) representing this molecule in the case of 2L and 2R - the molecule is represented by several sequences, and there is no seq-id of "chr 2" as a whole. More...
class	CGC_Scaf_stats
	CGC_Scaf_stats –. More...
class	CGC_Scaf_stats_Base
	CGC_Scaf_stats_Base –. More...
class	CGC_SeqIdAlias_Base
	Seq-id-alias a sequence has multiple seq-ids - refseq, genbank, local and each one has both gi and accession.version We cannot provide them as simply a list of seq-ids since it will be unclear which gi goes with which accession, therefore we group the related ones as alias pair. More...
class	CGC_Sequence_Base
	GC-Sequence: Used for scaffolds, scaffold-sets and components in Gencoll terminology. More...
class	CGC_SequenceStats
	CGC_SequenceStats –. More...
class	CGC_SequenceStats_Base
	Stats of complex objects Used at assembly and chromosome levels. More...
class	CGC_TaggedSequences
	CGC_TaggedSequences –. More...
class	CGC_TaggedSequences_Base
	GC-TaggedSequences: set of sequences in a specific role. More...
class	CGC_TypedSeqId
	CGC_TypedSeqId –. More...
class	CGC_TypedSeqId_Base
	CGC_TypedSeqId_Base –. More...

Typedefs
typedef CGC_Assemblies_Base	CGC_Assemblies::Tparent
typedef CSerialObject	CGC_Assemblies_Base::Tparent
typedef list< CRef< CGC_Query > >	CGC_Assemblies_Base::TQuery
typedef list< CRef< CGC_Assembly > >	CGC_Assemblies_Base::TAssemblies
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CGC_Assemblies_Base::TmemberIndex
typedef CSerialObject	CGC_Assembly_Base::Tparent
typedef CGC_AssemblyUnit	CGC_Assembly_Base::TUnit
typedef CGC_AssemblySet	CGC_Assembly_Base::TAssembly_set
typedef CGC_AssemblyDesc_Base	CGC_AssemblyDesc::Tparent
typedef CSerialObject	CGC_AssemblyDesc_Base::Tparent
typedef list< CRef< CGC_Project > >	CGC_AssemblyDesc_Base::TProjects
typedef string	CGC_AssemblyDesc_Base::TName
typedef string	CGC_AssemblyDesc_Base::TSubmitter_name
typedef string	CGC_AssemblyDesc_Base::TDisplay_name
typedef CStringUTF8	CGC_AssemblyDesc_Base::TLong_name
typedef string	CGC_AssemblyDesc_Base::TFilesafe_name
typedef string	CGC_AssemblyDesc_Base::TWgs_acc_prefix
typedef int	CGC_AssemblyDesc_Base::TWgs_acc_number
typedef int	CGC_AssemblyDesc_Base::TRelease_type
typedef int	CGC_AssemblyDesc_Base::TRelease_status
typedef list< CRef< CSeq_annot > >	CGC_AssemblyDesc_Base::TAnnot
typedef list< CRef< CGC_DbTagAlias > >	CGC_AssemblyDesc_Base::TSynonyms
typedef CDate	CGC_AssemblyDesc_Base::TSubmitter_date
typedef CSeq_descr	CGC_AssemblyDesc_Base::TDescr
typedef bool	CGC_AssemblyDesc_Base::TPartial
typedef double	CGC_AssemblyDesc_Base::TCoverage
typedef int	CGC_AssemblyDesc_Base::TRelease_level
typedef CStringUTF8	CGC_AssemblyDesc_Base::TSubmitter_organization
typedef Tparent::CMemberIndex< E_memberIndex, 19 >	CGC_AssemblyDesc_Base::TmemberIndex
typedef CSerialObject	CGC_AssemblySet_Base::Tparent
typedef list< CRef< CDbtag > >	CGC_AssemblySet_Base::TId
typedef int	CGC_AssemblySet_Base::TSet_type
typedef int	CGC_AssemblySet_Base::TClass
typedef CGC_AssemblyDesc	CGC_AssemblySet_Base::TDesc
typedef CGC_Assembly	CGC_AssemblySet_Base::TPrimary_assembly
typedef list< CRef< CGC_Assembly > >	CGC_AssemblySet_Base::TMore_assemblies
typedef CGC_SequenceStats	CGC_AssemblySet_Base::TStats
typedef Tparent::CMemberIndex< E_memberIndex, 8 >	CGC_AssemblySet_Base::TmemberIndex
typedef CSerialObject	CGC_AssemblyUnit_Base::Tparent
typedef list< CRef< CDbtag > >	CGC_AssemblyUnit_Base::TId
typedef int	CGC_AssemblyUnit_Base::TClass
typedef CGC_AssemblyDesc	CGC_AssemblyUnit_Base::TDesc
typedef list< CRef< CGC_Replicon > >	CGC_AssemblyUnit_Base::TMols
typedef list< CRef< CGC_TaggedSequences > >	CGC_AssemblyUnit_Base::TOther_sequences
typedef CGC_SequenceStats	CGC_AssemblyUnit_Base::TStats
typedef list< CRef< CGC_Scaf_stats > >	CGC_AssemblyUnit_Base::TUnplaced_stats
typedef list< CRef< CGC_Scaf_stats > >	CGC_AssemblyUnit_Base::TUnplaced_unlocalized_stats
typedef Tparent::CMemberIndex< E_memberIndex, 9 >	CGC_AssemblyUnit_Base::TmemberIndex
typedef CGC_DbTagAlias_Base	CGC_DbTagAlias::Tparent
typedef CSerialObject	CGC_DbTagAlias_Base::Tparent
typedef CDbtag	CGC_DbTagAlias_Base::TRefseq
typedef CDbtag	CGC_DbTagAlias_Base::TGenbank
typedef int	CGC_DbTagAlias_Base::TSimilarity
typedef Tparent::CMemberIndex< E_memberIndex, 4 >	CGC_DbTagAlias_Base::TmemberIndex
typedef CGC_External_Seqid_Base	CGC_External_Seqid::Tparent
typedef CSerialObject	CGC_External_Seqid_Base::Tparent
typedef string	CGC_External_Seqid_Base::TExternal
typedef CSeq_id	CGC_External_Seqid_Base::TId
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CGC_External_Seqid_Base::TmemberIndex
typedef CGC_Genome_Base	CGC_Genome::Tparent
typedef CSerialObject	CGC_Genome_Base::Tparent
typedef list< CRef< CDbtag > >	CGC_Genome_Base::TId
typedef list< CRef< CGC_Project > >	CGC_Genome_Base::TProjects
typedef CSeq_descr	CGC_Genome_Base::TDescr
typedef list< string >	CGC_Genome_Base::TChr_names
typedef list< CRef< CGC_GenomicPart > >	CGC_Genome_Base::TParts
typedef Tparent::CMemberIndex< E_memberIndex, 6 >	CGC_Genome_Base::TmemberIndex
typedef CGC_GenomicPart_Base	CGC_GenomicPart::Tparent
typedef CSerialObject	CGC_GenomicPart_Base::Tparent
typedef CGC_Assembly	CGC_GenomicPart_Base::TAssembly
typedef CGC_Replicon	CGC_GenomicPart_Base::TMol
typedef CGC_Sequence	CGC_GenomicPart_Base::TSeqs
typedef CGC_Project_Base	CGC_Project::Tparent
typedef CSerialObject	CGC_Project_Base::Tparent
typedef string	CGC_Project_Base::TProject_role
typedef int	CGC_Project_Base::TProject_id
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CGC_Project_Base::TmemberIndex
typedef CGC_Query_Base	CGC_Query::Tparent
typedef CSerialObject	CGC_Query_Base::Tparent
typedef string	CGC_Query_Base::TParam
typedef string	CGC_Query_Base::TValue
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CGC_Query_Base::TmemberIndex
typedef CSerialObject	CGC_Replicon_Base::Tparent
typedef CSerialObject	CGC_Replicon_Base::C_Sequence::Tparent
typedef CGC_Sequence	CGC_Replicon_Base::C_Sequence::TSingle
typedef list< CRef< CGC_Sequence > >	CGC_Replicon_Base::C_Sequence::TSet
typedef string	CGC_Replicon_Base::TName
typedef string	CGC_Replicon_Base::TLocal_name
typedef C_Sequence	CGC_Replicon_Base::TSequence
typedef Tparent::CMemberIndex< E_memberIndex, 4 >	CGC_Replicon_Base::TmemberIndex
typedef CGC_Scaf_stats_Base	CGC_Scaf_stats::Tparent
typedef CSerialObject	CGC_Scaf_stats_Base::Tparent
typedef int	CGC_Scaf_stats_Base::TStats_category
typedef Uint8	CGC_Scaf_stats_Base::TValue
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CGC_Scaf_stats_Base::TmemberIndex
typedef CSerialObject	CGC_SeqIdAlias_Base::Tparent
typedef CSeq_id	CGC_SeqIdAlias_Base::TPublic
typedef CSeq_id	CGC_SeqIdAlias_Base::TGpipe
typedef CSeq_id	CGC_SeqIdAlias_Base::TGi
typedef int	CGC_SeqIdAlias_Base::TSimilarity
typedef Tparent::CMemberIndex< E_memberIndex, 5 >	CGC_SeqIdAlias_Base::TmemberIndex
typedef CSerialObject	CGC_Sequence_Base::Tparent
typedef CSeq_id	CGC_Sequence_Base::TSeq_id
typedef list< CRef< CGC_TypedSeqId > >	CGC_Sequence_Base::TSeq_id_synonyms
typedef CSeq_descr	CGC_Sequence_Base::TDescr
typedef list< CRef< CSeq_annot > >	CGC_Sequence_Base::TAnnot
typedef list< CRef< CGC_TaggedSequences > >	CGC_Sequence_Base::TSequences
typedef CDelta_ext	CGC_Sequence_Base::TStructure
typedef CGC_SequenceStats	CGC_Sequence_Base::TStats
typedef int	CGC_Sequence_Base::TPatch_type
typedef list< int >	CGC_Sequence_Base::TRoles
typedef Tparent::CMemberIndex< E_memberIndex, 10 >	CGC_Sequence_Base::TmemberIndex
typedef CGC_SequenceStats_Base	CGC_SequenceStats::Tparent
typedef CSerialObject	CGC_SequenceStats_Base::Tparent
typedef list< CRef< CGC_Scaf_stats > >	CGC_SequenceStats_Base::TAll_scaf
typedef list< CRef< CGC_Scaf_stats > >	CGC_SequenceStats_Base::TOrdered_scaf
typedef list< CRef< CGC_Scaf_stats > >	CGC_SequenceStats_Base::TUnordered_scaf
typedef list< CRef< CGC_Scaf_stats > >	CGC_SequenceStats_Base::TUnplaced_scaf
typedef list< CRef< CGC_Scaf_stats > >	CGC_SequenceStats_Base::TAligned_scaf
typedef list< CRef< CGC_Scaf_stats > >	CGC_SequenceStats_Base::TUnaligned_scaf
typedef Tparent::CMemberIndex< E_memberIndex, 7 >	CGC_SequenceStats_Base::TmemberIndex
typedef CGC_TaggedSequences_Base	CGC_TaggedSequences::Tparent
typedef CSerialObject	CGC_TaggedSequences_Base::Tparent
typedef int	CGC_TaggedSequences_Base::TState
typedef list< CRef< CGC_Sequence > >	CGC_TaggedSequences_Base::TSeqs
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CGC_TaggedSequences_Base::TmemberIndex
typedef CGC_TypedSeqId_Base	CGC_TypedSeqId::Tparent
typedef CSerialObject	CGC_TypedSeqId_Base::Tparent
typedef CGC_SeqIdAlias	CGC_TypedSeqId_Base::TGenbank
typedef CGC_SeqIdAlias	CGC_TypedSeqId_Base::TRefseq
typedef CSeq_id	CGC_TypedSeqId_Base::TPrivate
typedef CGC_External_Seqid	CGC_TypedSeqId_Base::TExternal

Enumerations
enum class	CGC_Assemblies_Base::E_memberIndex { CGC_Assemblies_Base::e__allMandatory = 0 , CGC_Assemblies_Base::e_query , CGC_Assemblies_Base::e_assemblies }
enum	CGC_Assembly_Base::E_Choice { CGC_Assembly_Base::e_not_set = 0 , CGC_Assembly_Base::e_Unit , CGC_Assembly_Base::e_Assembly_set }
	Choice variants. More...
enum	CGC_Assembly_Base::E_ChoiceStopper { CGC_Assembly_Base::e_MaxChoice = 3 }
	Maximum+1 value of the choice variant enumerator. More...
enum	CGC_AssemblyDesc_Base::ERelease_type { CGC_AssemblyDesc_Base::eRelease_type_genbank = 1 , CGC_AssemblyDesc_Base::eRelease_type_refseq = 2 }
	release type: RefSeq / GenBank. More...
enum	CGC_AssemblyDesc_Base::ERelease_status {   CGC_AssemblyDesc_Base::eRelease_status_new = 0 , CGC_AssemblyDesc_Base::eRelease_status_gpipe = 5 , CGC_AssemblyDesc_Base::eRelease_status_public = 10 , CGC_AssemblyDesc_Base::eRelease_status_suppressed = 15 ,   CGC_AssemblyDesc_Base::eRelease_status_hup = 100 , CGC_AssemblyDesc_Base::eRelease_status_withdrawn = 105 }
	release status (numeric values have gaps for possible additional states More...
enum	CGC_AssemblyDesc_Base::ERelease_level { CGC_AssemblyDesc_Base::eRelease_level_major = 0 , CGC_AssemblyDesc_Base::eRelease_level_patch = 1 , CGC_AssemblyDesc_Base::eRelease_level_minor = 2 , CGC_AssemblyDesc_Base::eRelease_level_other = 255 }
	release level: Most of releases are major More...
enum class	CGC_AssemblyDesc_Base::E_memberIndex {   CGC_AssemblyDesc_Base::e__allMandatory = 0 , CGC_AssemblyDesc_Base::e_projects , CGC_AssemblyDesc_Base::e_name , CGC_AssemblyDesc_Base::e_submitter_name ,   CGC_AssemblyDesc_Base::e_display_name , CGC_AssemblyDesc_Base::e_long_name , CGC_AssemblyDesc_Base::e_filesafe_name , CGC_AssemblyDesc_Base::e_wgs_acc_prefix ,   CGC_AssemblyDesc_Base::e_wgs_acc_number , CGC_AssemblyDesc_Base::e_release_type , CGC_AssemblyDesc_Base::e_release_status , CGC_AssemblyDesc_Base::e_annot ,   CGC_AssemblyDesc_Base::e_synonyms , CGC_AssemblyDesc_Base::e_submitter_date , CGC_AssemblyDesc_Base::e_descr , CGC_AssemblyDesc_Base::e_partial ,   CGC_AssemblyDesc_Base::e_coverage , CGC_AssemblyDesc_Base::e_release_level , CGC_AssemblyDesc_Base::e_submitter_organization }
enum	CGC_AssemblySet_Base::ESet_type { CGC_AssemblySet_Base::eSet_type_full_assembly = 0 , CGC_AssemblySet_Base::eSet_type_assembly_set = 100 , CGC_AssemblySet_Base::eSet_type_other = 255 }
	set type: Assembly-Sets can be of 2 categories More...
enum	CGC_AssemblySet_Base::EClass {   CGC_AssemblySet_Base::eClass_full_assembly = 0 , CGC_AssemblySet_Base::eClass_haploid = 1 , CGC_AssemblySet_Base::eClass_haploid_with_alt_loci = 2 , CGC_AssemblySet_Base::eClass_diploid = 3 ,   CGC_AssemblySet_Base::eClass_unresolved_diploid = 4 , CGC_AssemblySet_Base::eClass_alternate_haplotype = 5 , CGC_AssemblySet_Base::eClass_alternate_pseudohaplotype = 6 , CGC_AssemblySet_Base::eClass_annotation_target_set = 101 ,   CGC_AssemblySet_Base::eClass_analysis_set = 102 , CGC_AssemblySet_Base::eClass_other = 255 }
	'class' defines the semantics of how to interpret this item More...
enum class	CGC_AssemblySet_Base::E_memberIndex {   CGC_AssemblySet_Base::e__allMandatory = 0 , CGC_AssemblySet_Base::e_id , CGC_AssemblySet_Base::e_set_type , CGC_AssemblySet_Base::e_class ,   CGC_AssemblySet_Base::e_desc , CGC_AssemblySet_Base::e_primary_assembly , CGC_AssemblySet_Base::e_more_assemblies , CGC_AssemblySet_Base::e_stats }
enum	CGC_AssemblyUnit_Base::EClass { CGC_AssemblyUnit_Base::eClass_haploid_unit = 1 , CGC_AssemblyUnit_Base::eClass_alt_loci = 2 , CGC_AssemblyUnit_Base::eClass_assembly_patch = 3 , CGC_AssemblyUnit_Base::eClass_other = 255 }
	'class' defines the semantics of how to interpret this item More...
enum class	CGC_AssemblyUnit_Base::E_memberIndex {   CGC_AssemblyUnit_Base::e__allMandatory = 0 , CGC_AssemblyUnit_Base::e_id , CGC_AssemblyUnit_Base::e_class , CGC_AssemblyUnit_Base::e_desc ,   CGC_AssemblyUnit_Base::e_mols , CGC_AssemblyUnit_Base::e_other_sequences , CGC_AssemblyUnit_Base::e_stats , CGC_AssemblyUnit_Base::e_unplaced_stats ,   CGC_AssemblyUnit_Base::e_unplaced_unlocalized_stats }
enum	CGC_DbTagAlias_Base::ESimilarity { CGC_DbTagAlias_Base::eSimilarity_unknown = 0 , CGC_DbTagAlias_Base::eSimilarity_identical = 1 , CGC_DbTagAlias_Base::eSimilarity_different = 255 }
	Similarity: relationship between 2 assemblies represented by DbTags Can be expanded to multiple level of identicality can use bitmap to flag ambiguity between different identicality levels. More...
enum class	CGC_DbTagAlias_Base::E_memberIndex { CGC_DbTagAlias_Base::e__allMandatory = 0 , CGC_DbTagAlias_Base::e_refseq , CGC_DbTagAlias_Base::e_genbank , CGC_DbTagAlias_Base::e_similarity }
enum class	CGC_External_Seqid_Base::E_memberIndex { CGC_External_Seqid_Base::e__allMandatory = 0 , CGC_External_Seqid_Base::e_external , CGC_External_Seqid_Base::e_id }
enum class	CGC_Genome_Base::E_memberIndex {   CGC_Genome_Base::e__allMandatory = 0 , CGC_Genome_Base::e_id , CGC_Genome_Base::e_projects , CGC_Genome_Base::e_descr ,   CGC_Genome_Base::e_chr_names , CGC_Genome_Base::e_parts }
enum	CGC_GenomicPart_Base::E_Choice { CGC_GenomicPart_Base::e_not_set = 0 , CGC_GenomicPart_Base::e_Assembly , CGC_GenomicPart_Base::e_Mol , CGC_GenomicPart_Base::e_Seqs }
	Choice variants. More...
enum	CGC_GenomicPart_Base::E_ChoiceStopper { CGC_GenomicPart_Base::e_MaxChoice = 4 }
	Maximum+1 value of the choice variant enumerator. More...
enum class	CGC_Project_Base::E_memberIndex { CGC_Project_Base::e__allMandatory = 0 , CGC_Project_Base::e_project_role , CGC_Project_Base::e_project_id }
enum class	CGC_Query_Base::E_memberIndex { CGC_Query_Base::e__allMandatory = 0 , CGC_Query_Base::e_param , CGC_Query_Base::e_value }
enum	CGC_Replicon_Base::C_Sequence::E_Choice { CGC_Replicon_Base::C_Sequence::e_not_set = 0 , CGC_Replicon_Base::C_Sequence::e_Single , CGC_Replicon_Base::C_Sequence::e_Set }
	Choice variants. More...
enum	CGC_Replicon_Base::C_Sequence::E_ChoiceStopper { CGC_Replicon_Base::C_Sequence::e_MaxChoice = 3 }
	Maximum+1 value of the choice variant enumerator. More...
enum class	CGC_Replicon_Base::E_memberIndex { CGC_Replicon_Base::e__allMandatory = 0 , CGC_Replicon_Base::e_name , CGC_Replicon_Base::e_local_name , CGC_Replicon_Base::e_sequence }
enum	CGC_Scaf_stats_Base::EStats_category {   CGC_Scaf_stats_Base::eStats_category_replicon_count = 70 , CGC_Scaf_stats_Base::eStats_category_scaffold_count = 22 , CGC_Scaf_stats_Base::eStats_category_component_count = 23 , CGC_Scaf_stats_Base::eStats_category_component_span_count = 24 ,   CGC_Scaf_stats_Base::eStats_category_total_length = 1 , CGC_Scaf_stats_Base::eStats_category_ungapped_length = 2 , CGC_Scaf_stats_Base::eStats_category_min_gapped_scaf_length = 25 , CGC_Scaf_stats_Base::eStats_category_max_gapped_scaf_length = 26 ,   CGC_Scaf_stats_Base::eStats_category_min_ungapped_scaf_length = 27 , CGC_Scaf_stats_Base::eStats_category_max_ungapped_scaf_length = 28 , CGC_Scaf_stats_Base::eStats_category_active_finishing_bases = 3 , CGC_Scaf_stats_Base::eStats_category_draft_bases = 5 ,   CGC_Scaf_stats_Base::eStats_category_finished_bases = 7 , CGC_Scaf_stats_Base::eStats_category_whole_genome_finishing_bases = 9 , CGC_Scaf_stats_Base::eStats_category_other_sequences = 11 , CGC_Scaf_stats_Base::eStats_category_pre_draft = 13 ,   CGC_Scaf_stats_Base::eStats_category_wgs_bases = 15 , CGC_Scaf_stats_Base::eStats_category_bases_in_spanned_gaps = 17 , CGC_Scaf_stats_Base::eStats_category_n50 = 19 , CGC_Scaf_stats_Base::eStats_category_spanned_gaps = 20 ,   CGC_Scaf_stats_Base::eStats_category_unspanned_gaps = 21 , CGC_Scaf_stats_Base::eStats_category_bases_in_unspanned_gaps = 29 , CGC_Scaf_stats_Base::eStats_category_count_contig = 30 , CGC_Scaf_stats_Base::eStats_category_contig_n50 = 31 ,   CGC_Scaf_stats_Base::eStats_category_contig_L50 = 32 , CGC_Scaf_stats_Base::eStats_category_contig_n75 = 33 , CGC_Scaf_stats_Base::eStats_category_contig_n90 = 34 , CGC_Scaf_stats_Base::eStats_category_scaf_L50 = 35 ,   CGC_Scaf_stats_Base::eStats_category_scaf_n75 = 36 , CGC_Scaf_stats_Base::eStats_category_scaf_n90 = 37 , CGC_Scaf_stats_Base::eStats_category_gc_count = 38 , CGC_Scaf_stats_Base::eStats_category_atgc_count = 39 ,   CGC_Scaf_stats_Base::eStats_category_gc_perc = 40 , CGC_Scaf_stats_Base::eStats_category_is_there_unplaced_scaf = 72 , CGC_Scaf_stats_Base::eStats_category_count_singleton_unordered_scaffold = 73 , CGC_Scaf_stats_Base::eStats_category_count_chr_made_of_singleton_ordered_scaffold = 74 ,   CGC_Scaf_stats_Base::eStats_category_count_chr_with_single_component = 75 , CGC_Scaf_stats_Base::eStats_category_count_singleton_in_minus_orientation = 76 , CGC_Scaf_stats_Base::eStats_category_count_unknown_gaps = 80 , CGC_Scaf_stats_Base::eStats_category_count_implicit_scaf_src_name = 82 ,   CGC_Scaf_stats_Base::eStats_category_count_explicit_scaf_src_name = 83 , CGC_Scaf_stats_Base::eStats_category_all_chr_has_single_component = 84 , CGC_Scaf_stats_Base::eStats_category_count_scaf_with_terminal_gaps = 85 , CGC_Scaf_stats_Base::eStats_category_count_chr_with_terminal_gaps = 86 ,   CGC_Scaf_stats_Base::eStats_category_count_uniq_components = 87 , CGC_Scaf_stats_Base::eStats_category_count_uniq_component_diff_from_last_release = 88 , CGC_Scaf_stats_Base::eStats_category_count_chromosome_types = 89 , CGC_Scaf_stats_Base::eStats_category_count_chromosome_terminal_gap_types = 90 ,   CGC_Scaf_stats_Base::eStats_category_count_dropped_components = 91 , CGC_Scaf_stats_Base::eStats_category_count_non_chromosome_replicon = 92 , CGC_Scaf_stats_Base::eStats_category_count_assembly_units = 93 , CGC_Scaf_stats_Base::eStats_category_count_alt_loci_units = 94 ,   CGC_Scaf_stats_Base::eStats_category_count_fixed_patches = 95 , CGC_Scaf_stats_Base::eStats_category_count_novel_patches = 96 , CGC_Scaf_stats_Base::eStats_category_count_regions = 97 , CGC_Scaf_stats_Base::eStats_category_count_patches = 98 ,   CGC_Scaf_stats_Base::eStats_category_count_par_regions = 99 , CGC_Scaf_stats_Base::eStats_category_count_genomic_regions = 100 , CGC_Scaf_stats_Base::eStats_category_count_chromosome_replicons = 101 , CGC_Scaf_stats_Base::eStats_category_assembly_status = 102 ,   CGC_Scaf_stats_Base::eStats_category_net_count_scaffold = 103 , CGC_Scaf_stats_Base::eStats_category_net_count_component = 104 , CGC_Scaf_stats_Base::eStats_category_count_regions_contain_alt_loci = 105 , CGC_Scaf_stats_Base::eStats_category_count_regions_contain_fix_patch = 106 ,   CGC_Scaf_stats_Base::eStats_category_count_regions_contain_novel_patch = 107 , CGC_Scaf_stats_Base::eStats_category_count_fix_patch_with_alignment = 108 , CGC_Scaf_stats_Base::eStats_category_count_novel_patch_with_alignment = 109 , CGC_Scaf_stats_Base::eStats_category_count_alt_scaf_with_alignment = 110 ,   CGC_Scaf_stats_Base::eStats_category_count_alt_loci_scaf = 111 , CGC_Scaf_stats_Base::eStats_category_count_real_scaffolds = 112 , CGC_Scaf_stats_Base::eStats_category_top_level_count = 113 , CGC_Scaf_stats_Base::eStats_category_total_gap_length = 114 ,   CGC_Scaf_stats_Base::eStats_category_count_replicons_without_ordered_scaf = 115 , CGC_Scaf_stats_Base::eStats_category_other = 255 }
	NOTE: These values equal to the stats_cd values in CodeStatistics table in GenomeColl. More...
enum class	CGC_Scaf_stats_Base::E_memberIndex { CGC_Scaf_stats_Base::e__allMandatory = 0 , CGC_Scaf_stats_Base::e_stats_category , CGC_Scaf_stats_Base::e_value }
enum	CGC_SeqIdAlias_Base::ESimilarity { CGC_SeqIdAlias_Base::eSimilarity_unknown = 0 , CGC_SeqIdAlias_Base::eSimilarity_identical = 1 , CGC_SeqIdAlias_Base::eSimilarity_different = 255 }
enum class	CGC_SeqIdAlias_Base::E_memberIndex {   CGC_SeqIdAlias_Base::e__allMandatory = 0 , CGC_SeqIdAlias_Base::e_public , CGC_SeqIdAlias_Base::e_gpipe , CGC_SeqIdAlias_Base::e_gi ,   CGC_SeqIdAlias_Base::e_similarity }
enum	CGC_Sequence_Base::EPatch_type { CGC_Sequence_Base::ePatch_type_novel = 0 , CGC_Sequence_Base::ePatch_type_fix = 1 , CGC_Sequence_Base::ePatch_type_other = 255 }
enum class	CGC_Sequence_Base::E_memberIndex {   CGC_Sequence_Base::e__allMandatory = 0 , CGC_Sequence_Base::e_seq_id , CGC_Sequence_Base::e_seq_id_synonyms , CGC_Sequence_Base::e_descr ,   CGC_Sequence_Base::e_annot , CGC_Sequence_Base::e_sequences , CGC_Sequence_Base::e_structure , CGC_Sequence_Base::e_stats ,   CGC_Sequence_Base::e_patch_type , CGC_Sequence_Base::e_roles }
enum	EGC_SequenceRole {   eGC_SequenceRole_chromosome = 2 , eGC_SequenceRole_scaffold = 3 , eGC_SequenceRole_component = 4 , eGC_SequenceRole_top_level = 10 ,   eGC_SequenceRole_pseudo_scaffold = 20 , eGC_SequenceRole_submitter_pseudo_scaffold = 21 }
	sequence-role: what role(s) does this sequence have in the assembly a sequence may have more than one role. More...
enum class	CGC_SequenceStats_Base::E_memberIndex {   CGC_SequenceStats_Base::e__allMandatory = 0 , CGC_SequenceStats_Base::e_all_scaf , CGC_SequenceStats_Base::e_ordered_scaf , CGC_SequenceStats_Base::e_unordered_scaf ,   CGC_SequenceStats_Base::e_unplaced_scaf , CGC_SequenceStats_Base::e_aligned_scaf , CGC_SequenceStats_Base::e_unaligned_scaf }
enum	CGC_TaggedSequences_Base::EState {   CGC_TaggedSequences_Base::eState_not_set = 0 , CGC_TaggedSequences_Base::eState_placed = 1 , CGC_TaggedSequences_Base::eState_unlocalized = 2 , CGC_TaggedSequences_Base::eState_unplaced = 3 ,   CGC_TaggedSequences_Base::eState_aligned = 4 , CGC_TaggedSequences_Base::eState_bits = 6 }
enum class	CGC_TaggedSequences_Base::E_memberIndex { CGC_TaggedSequences_Base::e__allMandatory = 0 , CGC_TaggedSequences_Base::e_state , CGC_TaggedSequences_Base::e_seqs }
enum	CGC_TypedSeqId_Base::E_Choice {   CGC_TypedSeqId_Base::e_not_set = 0 , CGC_TypedSeqId_Base::e_Genbank , CGC_TypedSeqId_Base::e_Refseq , CGC_TypedSeqId_Base::e_Private ,   CGC_TypedSeqId_Base::e_External }
	Choice variants. More...
enum	CGC_TypedSeqId_Base::E_ChoiceStopper { CGC_TypedSeqId_Base::e_MaxChoice = 5 }
	Maximum+1 value of the choice variant enumerator. More...

Functions
	CGC_Assemblies::CGC_Assemblies (void)
	CGC_Assemblies::~CGC_Assemblies (void)
	CGC_Assemblies::CGC_Assemblies (const CGC_Assemblies &value)
CGC_Assemblies &	CGC_Assemblies::operator= (const CGC_Assemblies &value)
	CGC_Assemblies_Base::CGC_Assemblies_Base (void)
virtual	CGC_Assemblies_Base::~CGC_Assemblies_Base (void)
	CGC_Assemblies_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CGC_Assemblies_Base::IsSetQuery (void) const
	Check if a value has been assigned to Query data member. More...
bool	CGC_Assemblies_Base::CanGetQuery (void) const
	Check if it is safe to call GetQuery method. More...
void	CGC_Assemblies_Base::ResetQuery (void)
	Reset Query data member. More...
const TQuery &	CGC_Assemblies_Base::GetQuery (void) const
	Get the Query member data. More...
TQuery &	CGC_Assemblies_Base::SetQuery (void)
	Assign a value to Query data member. More...
bool	CGC_Assemblies_Base::IsSetAssemblies (void) const
	Check if a value has been assigned to Assemblies data member. More...
bool	CGC_Assemblies_Base::CanGetAssemblies (void) const
	Check if it is safe to call GetAssemblies method. More...
void	CGC_Assemblies_Base::ResetAssemblies (void)
	Reset Assemblies data member. More...
const TAssemblies &	CGC_Assemblies_Base::GetAssemblies (void) const
	Get the Assemblies member data. More...
TAssemblies &	CGC_Assemblies_Base::SetAssemblies (void)
	Assign a value to Assemblies data member. More...
virtual void	CGC_Assemblies_Base::Reset (void)
	Reset the whole object. More...
	CGC_Assemblies_Base::CGC_Assemblies_Base (const CGC_Assemblies_Base &)
CGC_Assemblies_Base &	CGC_Assemblies_Base::operator= (const CGC_Assemblies_Base &)
	CGC_Assembly_Base::CGC_Assembly_Base (void)
virtual	CGC_Assembly_Base::~CGC_Assembly_Base (void)
	CGC_Assembly_Base::DECLARE_INTERNAL_TYPE_INFO ()
virtual void	CGC_Assembly_Base::Reset (void)
	Reset the whole object. More...
virtual void	CGC_Assembly_Base::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CGC_Assembly_Base::Which (void) const
	Which variant is currently selected. More...
void	CGC_Assembly_Base::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CGC_Assembly_Base::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CGC_Assembly_Base::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CGC_Assembly_Base::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CGC_Assembly_Base::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CGC_Assembly_Base::IsUnit (void) const
	Check if variant Unit is selected. More...
const TUnit &	CGC_Assembly_Base::GetUnit (void) const
	Get the variant data. More...
TUnit &	CGC_Assembly_Base::SetUnit (void)
	Select the variant. More...
void	CGC_Assembly_Base::SetUnit (TUnit &value)
	Select the variant and set its data. More...
bool	CGC_Assembly_Base::IsAssembly_set (void) const
	Check if variant Assembly_set is selected. More...
const TAssembly_set &	CGC_Assembly_Base::GetAssembly_set (void) const
	Get the variant data. More...
TAssembly_set &	CGC_Assembly_Base::SetAssembly_set (void)
	Select the variant. More...
void	CGC_Assembly_Base::SetAssembly_set (TAssembly_set &value)
	Select the variant and set its data. More...
	CGC_Assembly_Base::CGC_Assembly_Base (const CGC_Assembly_Base &)
CGC_Assembly_Base &	CGC_Assembly_Base::operator= (const CGC_Assembly_Base &)
void	CGC_Assembly_Base::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
	CGC_AssemblyDesc::CGC_AssemblyDesc (void)
	CGC_AssemblyDesc::~CGC_AssemblyDesc (void)
	CGC_AssemblyDesc::CGC_AssemblyDesc (const CGC_AssemblyDesc &value)
CGC_AssemblyDesc &	CGC_AssemblyDesc::operator= (const CGC_AssemblyDesc &value)
	CGC_AssemblyDesc_Base::CGC_AssemblyDesc_Base (void)
virtual	CGC_AssemblyDesc_Base::~CGC_AssemblyDesc_Base (void)
	CGC_AssemblyDesc_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CGC_AssemblyDesc_Base::ERelease_type (void)
	Access to ERelease_type's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CGC_AssemblyDesc_Base::ERelease_status (void)
	Access to ERelease_status's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CGC_AssemblyDesc_Base::ERelease_level (void)
	Access to ERelease_level's attributes (values, names) as defined in spec. More...
bool	CGC_AssemblyDesc_Base::IsSetProjects (void) const
	project ID for this genome this is the ID for this asssembly and may reflect the submitter/source Check if a value has been assigned to Projects data member. More...
bool	CGC_AssemblyDesc_Base::CanGetProjects (void) const
	Check if it is safe to call GetProjects method. More...
void	CGC_AssemblyDesc_Base::ResetProjects (void)
	Reset Projects data member. More...
const TProjects &	CGC_AssemblyDesc_Base::GetProjects (void) const
	Get the Projects member data. More...
TProjects &	CGC_AssemblyDesc_Base::SetProjects (void)
	Assign a value to Projects data member. More...
bool	CGC_AssemblyDesc_Base::IsSetName (void) const
	Names of the assembly Check if a value has been assigned to Name data member. More...
bool	CGC_AssemblyDesc_Base::CanGetName (void) const
	Check if it is safe to call GetName method. More...
void	CGC_AssemblyDesc_Base::ResetName (void)
	Reset Name data member. More...
const TName &	CGC_AssemblyDesc_Base::GetName (void) const
	Get the Name member data. More...
void	CGC_AssemblyDesc_Base::SetName (const TName &value)
	Assign a value to Name data member. More...
void	CGC_AssemblyDesc_Base::SetName (TName &&value)
TName &	CGC_AssemblyDesc_Base::SetName (void)
	Assign a value to Name data member. More...
bool	CGC_AssemblyDesc_Base::IsSetSubmitter_name (void) const
	Check if a value has been assigned to Submitter_name data member. More...
bool	CGC_AssemblyDesc_Base::CanGetSubmitter_name (void) const
	Check if it is safe to call GetSubmitter_name method. More...
void	CGC_AssemblyDesc_Base::ResetSubmitter_name (void)
	Reset Submitter_name data member. More...
const TSubmitter_name &	CGC_AssemblyDesc_Base::GetSubmitter_name (void) const
	Get the Submitter_name member data. More...
void	CGC_AssemblyDesc_Base::SetSubmitter_name (const TSubmitter_name &value)
	Assign a value to Submitter_name data member. More...
void	CGC_AssemblyDesc_Base::SetSubmitter_name (TSubmitter_name &&value)
TSubmitter_name &	CGC_AssemblyDesc_Base::SetSubmitter_name (void)
	Assign a value to Submitter_name data member. More...
bool	CGC_AssemblyDesc_Base::IsSetDisplay_name (void) const
	Check if a value has been assigned to Display_name data member. More...
bool	CGC_AssemblyDesc_Base::CanGetDisplay_name (void) const
	Check if it is safe to call GetDisplay_name method. More...
void	CGC_AssemblyDesc_Base::ResetDisplay_name (void)
	Reset Display_name data member. More...
const TDisplay_name &	CGC_AssemblyDesc_Base::GetDisplay_name (void) const
	Get the Display_name member data. More...
void	CGC_AssemblyDesc_Base::SetDisplay_name (const TDisplay_name &value)
	Assign a value to Display_name data member. More...
void	CGC_AssemblyDesc_Base::SetDisplay_name (TDisplay_name &&value)
TDisplay_name &	CGC_AssemblyDesc_Base::SetDisplay_name (void)
	Assign a value to Display_name data member. More...
bool	CGC_AssemblyDesc_Base::IsSetLong_name (void) const
	Check if a value has been assigned to Long_name data member. More...
bool	CGC_AssemblyDesc_Base::CanGetLong_name (void) const
	Check if it is safe to call GetLong_name method. More...
void	CGC_AssemblyDesc_Base::ResetLong_name (void)
	Reset Long_name data member. More...
const TLong_name &	CGC_AssemblyDesc_Base::GetLong_name (void) const
	Get the Long_name member data. More...
void	CGC_AssemblyDesc_Base::SetLong_name (const TLong_name &value)
	Assign a value to Long_name data member. More...
void	CGC_AssemblyDesc_Base::SetLong_name (TLong_name &&value)
TLong_name &	CGC_AssemblyDesc_Base::SetLong_name (void)
	Assign a value to Long_name data member. More...
bool	CGC_AssemblyDesc_Base::IsSetFilesafe_name (void) const
	Check if a value has been assigned to Filesafe_name data member. More...
bool	CGC_AssemblyDesc_Base::CanGetFilesafe_name (void) const
	Check if it is safe to call GetFilesafe_name method. More...
void	CGC_AssemblyDesc_Base::ResetFilesafe_name (void)
	Reset Filesafe_name data member. More...
const TFilesafe_name &	CGC_AssemblyDesc_Base::GetFilesafe_name (void) const
	Get the Filesafe_name member data. More...
void	CGC_AssemblyDesc_Base::SetFilesafe_name (const TFilesafe_name &value)
	Assign a value to Filesafe_name data member. More...
void	CGC_AssemblyDesc_Base::SetFilesafe_name (TFilesafe_name &&value)
TFilesafe_name &	CGC_AssemblyDesc_Base::SetFilesafe_name (void)
	Assign a value to Filesafe_name data member. More...
bool	CGC_AssemblyDesc_Base::IsSetWgs_acc_prefix (void) const
	Check if a value has been assigned to Wgs_acc_prefix data member. More...
bool	CGC_AssemblyDesc_Base::CanGetWgs_acc_prefix (void) const
	Check if it is safe to call GetWgs_acc_prefix method. More...
void	CGC_AssemblyDesc_Base::ResetWgs_acc_prefix (void)
	Reset Wgs_acc_prefix data member. More...
const TWgs_acc_prefix &	CGC_AssemblyDesc_Base::GetWgs_acc_prefix (void) const
	Get the Wgs_acc_prefix member data. More...
void	CGC_AssemblyDesc_Base::SetWgs_acc_prefix (const TWgs_acc_prefix &value)
	Assign a value to Wgs_acc_prefix data member. More...
void	CGC_AssemblyDesc_Base::SetWgs_acc_prefix (TWgs_acc_prefix &&value)
TWgs_acc_prefix &	CGC_AssemblyDesc_Base::SetWgs_acc_prefix (void)
	Assign a value to Wgs_acc_prefix data member. More...
bool	CGC_AssemblyDesc_Base::IsSetWgs_acc_number (void) const
	Check if a value has been assigned to Wgs_acc_number data member. More...
bool	CGC_AssemblyDesc_Base::CanGetWgs_acc_number (void) const
	Check if it is safe to call GetWgs_acc_number method. More...
void	CGC_AssemblyDesc_Base::ResetWgs_acc_number (void)
	Reset Wgs_acc_number data member. More...
TWgs_acc_number	CGC_AssemblyDesc_Base::GetWgs_acc_number (void) const
	Get the Wgs_acc_number member data. More...
void	CGC_AssemblyDesc_Base::SetWgs_acc_number (TWgs_acc_number value)
	Assign a value to Wgs_acc_number data member. More...
TWgs_acc_number &	CGC_AssemblyDesc_Base::SetWgs_acc_number (void)
	Assign a value to Wgs_acc_number data member. More...
bool	CGC_AssemblyDesc_Base::IsSetRelease_type (void) const
	Check if a value has been assigned to Release_type data member. More...
bool	CGC_AssemblyDesc_Base::CanGetRelease_type (void) const
	Check if it is safe to call GetRelease_type method. More...
void	CGC_AssemblyDesc_Base::ResetRelease_type (void)
	Reset Release_type data member. More...
TRelease_type	CGC_AssemblyDesc_Base::GetRelease_type (void) const
	Get the Release_type member data. More...
void	CGC_AssemblyDesc_Base::SetRelease_type (TRelease_type value)
	Assign a value to Release_type data member. More...
TRelease_type &	CGC_AssemblyDesc_Base::SetRelease_type (void)
	Assign a value to Release_type data member. More...
bool	CGC_AssemblyDesc_Base::IsSetRelease_status (void) const
	Check if a value has been assigned to Release_status data member. More...
bool	CGC_AssemblyDesc_Base::CanGetRelease_status (void) const
	Check if it is safe to call GetRelease_status method. More...
void	CGC_AssemblyDesc_Base::ResetRelease_status (void)
	Reset Release_status data member. More...
TRelease_status	CGC_AssemblyDesc_Base::GetRelease_status (void) const
	Get the Release_status member data. More...
void	CGC_AssemblyDesc_Base::SetRelease_status (TRelease_status value)
	Assign a value to Release_status data member. More...
TRelease_status &	CGC_AssemblyDesc_Base::SetRelease_status (void)
	Assign a value to Release_status data member. More...
bool	CGC_AssemblyDesc_Base::IsSetAnnot (void) const
	in alt-loci units - contain alignment of this sequence to the primary unit Check if a value has been assigned to Annot data member. More...
bool	CGC_AssemblyDesc_Base::CanGetAnnot (void) const
	Check if it is safe to call GetAnnot method. More...
void	CGC_AssemblyDesc_Base::ResetAnnot (void)
	Reset Annot data member. More...
const TAnnot &	CGC_AssemblyDesc_Base::GetAnnot (void) const
	Get the Annot member data. More...
TAnnot &	CGC_AssemblyDesc_Base::SetAnnot (void)
	Assign a value to Annot data member. More...
bool	CGC_AssemblyDesc_Base::IsSetSynonyms (void) const
	Synonyms: Other releases of same assembly Check if a value has been assigned to Synonyms data member. More...
bool	CGC_AssemblyDesc_Base::CanGetSynonyms (void) const
	Check if it is safe to call GetSynonyms method. More...
void	CGC_AssemblyDesc_Base::ResetSynonyms (void)
	Reset Synonyms data member. More...
const TSynonyms &	CGC_AssemblyDesc_Base::GetSynonyms (void) const
	Get the Synonyms member data. More...
TSynonyms &	CGC_AssemblyDesc_Base::SetSynonyms (void)
	Assign a value to Synonyms data member. More...
bool	CGC_AssemblyDesc_Base::IsSetSubmitter_date (void) const
	Submitter release date Check if a value has been assigned to Submitter_date data member. More...
bool	CGC_AssemblyDesc_Base::CanGetSubmitter_date (void) const
	Check if it is safe to call GetSubmitter_date method. More...
void	CGC_AssemblyDesc_Base::ResetSubmitter_date (void)
	Reset Submitter_date data member. More...
const TSubmitter_date &	CGC_AssemblyDesc_Base::GetSubmitter_date (void) const
	Get the Submitter_date member data. More...
void	CGC_AssemblyDesc_Base::SetSubmitter_date (TSubmitter_date &value)
	Assign a value to Submitter_date data member. More...
TSubmitter_date &	CGC_AssemblyDesc_Base::SetSubmitter_date (void)
	Assign a value to Submitter_date data member. More...
bool	CGC_AssemblyDesc_Base::IsSetDescr (void) const
	Various attributes assigned at this level: biosrc, comments, publications... More...
bool	CGC_AssemblyDesc_Base::CanGetDescr (void) const
	Check if it is safe to call GetDescr method. More...
void	CGC_AssemblyDesc_Base::ResetDescr (void)
	Reset Descr data member. More...
const TDescr &	CGC_AssemblyDesc_Base::GetDescr (void) const
	Get the Descr member data. More...
void	CGC_AssemblyDesc_Base::SetDescr (TDescr &value)
	Assign a value to Descr data member. More...
TDescr &	CGC_AssemblyDesc_Base::SetDescr (void)
	Assign a value to Descr data member. More...
bool	CGC_AssemblyDesc_Base::IsSetPartial (void) const
	flag: is this assembly partial? **NOTE: not set = not known!! Check if a value has been assigned to Partial data member. More...
bool	CGC_AssemblyDesc_Base::CanGetPartial (void) const
	Check if it is safe to call GetPartial method. More...
void	CGC_AssemblyDesc_Base::ResetPartial (void)
	Reset Partial data member. More...
TPartial	CGC_AssemblyDesc_Base::GetPartial (void) const
	Get the Partial member data. More...
void	CGC_AssemblyDesc_Base::SetPartial (TPartial value)
	Assign a value to Partial data member. More...
TPartial &	CGC_AssemblyDesc_Base::SetPartial (void)
	Assign a value to Partial data member. More...
bool	CGC_AssemblyDesc_Base::IsSetCoverage (void) const
	level of coverage for this assembly **NOTE: not set = not known!! Check if a value has been assigned to Coverage data member. More...
bool	CGC_AssemblyDesc_Base::CanGetCoverage (void) const
	Check if it is safe to call GetCoverage method. More...
void	CGC_AssemblyDesc_Base::ResetCoverage (void)
	Reset Coverage data member. More...
TCoverage	CGC_AssemblyDesc_Base::GetCoverage (void) const
	Get the Coverage member data. More...
void	CGC_AssemblyDesc_Base::SetCoverage (TCoverage value)
	Assign a value to Coverage data member. More...
TCoverage &	CGC_AssemblyDesc_Base::SetCoverage (void)
	Assign a value to Coverage data member. More...
bool	CGC_AssemblyDesc_Base::IsSetRelease_level (void) const
	Check if a value has been assigned to Release_level data member. More...
bool	CGC_AssemblyDesc_Base::CanGetRelease_level (void) const
	Check if it is safe to call GetRelease_level method. More...
void	CGC_AssemblyDesc_Base::ResetRelease_level (void)
	Reset Release_level data member. More...
void	CGC_AssemblyDesc_Base::SetDefaultRelease_level (void)
	Assign default value to Release_level data member. More...
TRelease_level	CGC_AssemblyDesc_Base::GetRelease_level (void) const
	Get the Release_level member data. More...
void	CGC_AssemblyDesc_Base::SetRelease_level (TRelease_level value)
	Assign a value to Release_level data member. More...
TRelease_level &	CGC_AssemblyDesc_Base::SetRelease_level (void)
	Assign a value to Release_level data member. More...
bool	CGC_AssemblyDesc_Base::IsSetSubmitter_organization (void) const
	organization which submitted this assembly. More...
bool	CGC_AssemblyDesc_Base::CanGetSubmitter_organization (void) const
	Check if it is safe to call GetSubmitter_organization method. More...
void	CGC_AssemblyDesc_Base::ResetSubmitter_organization (void)
	Reset Submitter_organization data member. More...
const TSubmitter_organization &	CGC_AssemblyDesc_Base::GetSubmitter_organization (void) const
	Get the Submitter_organization member data. More...
void	CGC_AssemblyDesc_Base::SetSubmitter_organization (const TSubmitter_organization &value)
	Assign a value to Submitter_organization data member. More...
void	CGC_AssemblyDesc_Base::SetSubmitter_organization (TSubmitter_organization &&value)
TSubmitter_organization &	CGC_AssemblyDesc_Base::SetSubmitter_organization (void)
	Assign a value to Submitter_organization data member. More...
virtual void	CGC_AssemblyDesc_Base::Reset (void)
	Reset the whole object. More...
	CGC_AssemblyDesc_Base::CGC_AssemblyDesc_Base (const CGC_AssemblyDesc_Base &)
CGC_AssemblyDesc_Base &	CGC_AssemblyDesc_Base::operator= (const CGC_AssemblyDesc_Base &)
	CGC_AssemblySet_Base::CGC_AssemblySet_Base (void)
virtual	CGC_AssemblySet_Base::~CGC_AssemblySet_Base (void)
	CGC_AssemblySet_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CGC_AssemblySet_Base::ESet_type (void)
	Access to ESet_type's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CGC_AssemblySet_Base::EClass (void)
	Access to EClass's attributes (values, names) as defined in spec. More...
bool	CGC_AssemblySet_Base::IsSetId (void) const
	The identifier of this assembly examples: GC internal id, Assembly-accession.version Types of DbTags used: db "GenColl", tag id <assembly-release-id> db "GenColl", tag str <assembly-accession.version> db "AGP", tag id <agp-sumbission-id> db "GenColl_Chain", tag id <assembly-chain-id> db "UCSC_name", tag str <UCSC identifier for assembly> db "Ensembl_name",tag str <Ensembl identifier for assembly> Check if a value has been assigned to Id data member. More...
bool	CGC_AssemblySet_Base::CanGetId (void) const
	Check if it is safe to call GetId method. More...
void	CGC_AssemblySet_Base::ResetId (void)
	Reset Id data member. More...
const TId &	CGC_AssemblySet_Base::GetId (void) const
	Get the Id member data. More...
TId &	CGC_AssemblySet_Base::SetId (void)
	Assign a value to Id data member. More...
bool	CGC_AssemblySet_Base::IsSetSet_type (void) const
	Check if a value has been assigned to Set_type data member. More...
bool	CGC_AssemblySet_Base::CanGetSet_type (void) const
	Check if it is safe to call GetSet_type method. More...
void	CGC_AssemblySet_Base::ResetSet_type (void)
	Reset Set_type data member. More...
TSet_type	CGC_AssemblySet_Base::GetSet_type (void) const
	Get the Set_type member data. More...
void	CGC_AssemblySet_Base::SetSet_type (TSet_type value)
	Assign a value to Set_type data member. More...
TSet_type &	CGC_AssemblySet_Base::SetSet_type (void)
	Assign a value to Set_type data member. More...
bool	CGC_AssemblySet_Base::IsSetClass (void) const
	Check if a value has been assigned to Class data member. More...
bool	CGC_AssemblySet_Base::CanGetClass (void) const
	Check if it is safe to call GetClass method. More...
void	CGC_AssemblySet_Base::ResetClass (void)
	Reset Class data member. More...
TClass	CGC_AssemblySet_Base::GetClass (void) const
	Get the Class member data. More...
void	CGC_AssemblySet_Base::SetClass (TClass value)
	Assign a value to Class data member. More...
TClass &	CGC_AssemblySet_Base::SetClass (void)
	Assign a value to Class data member. More...
bool	CGC_AssemblySet_Base::IsSetDesc (void) const
	descriptors live in a shared data block Check if a value has been assigned to Desc data member. More...
bool	CGC_AssemblySet_Base::CanGetDesc (void) const
	Check if it is safe to call GetDesc method. More...
void	CGC_AssemblySet_Base::ResetDesc (void)
	Reset Desc data member. More...
const TDesc &	CGC_AssemblySet_Base::GetDesc (void) const
	Get the Desc member data. More...
void	CGC_AssemblySet_Base::SetDesc (TDesc &value)
	Assign a value to Desc data member. More...
TDesc &	CGC_AssemblySet_Base::SetDesc (void)
	Assign a value to Desc data member. More...
bool	CGC_AssemblySet_Base::IsSetPrimary_assembly (void) const
	we contain hierarchically a set of assemblies Check if a value has been assigned to Primary_assembly data member. More...
bool	CGC_AssemblySet_Base::CanGetPrimary_assembly (void) const
	Check if it is safe to call GetPrimary_assembly method. More...
void	CGC_AssemblySet_Base::ResetPrimary_assembly (void)
	Reset Primary_assembly data member. More...
const TPrimary_assembly &	CGC_AssemblySet_Base::GetPrimary_assembly (void) const
	Get the Primary_assembly member data. More...
void	CGC_AssemblySet_Base::SetPrimary_assembly (TPrimary_assembly &value)
	Assign a value to Primary_assembly data member. More...
TPrimary_assembly &	CGC_AssemblySet_Base::SetPrimary_assembly (void)
	Assign a value to Primary_assembly data member. More...
bool	CGC_AssemblySet_Base::IsSetMore_assemblies (void) const
	Check if a value has been assigned to More_assemblies data member. More...
bool	CGC_AssemblySet_Base::CanGetMore_assemblies (void) const
	Check if it is safe to call GetMore_assemblies method. More...
void	CGC_AssemblySet_Base::ResetMore_assemblies (void)
	Reset More_assemblies data member. More...
const TMore_assemblies &	CGC_AssemblySet_Base::GetMore_assemblies (void) const
	Get the More_assemblies member data. More...
TMore_assemblies &	CGC_AssemblySet_Base::SetMore_assemblies (void)
	Assign a value to More_assemblies data member. More...
bool	CGC_AssemblySet_Base::IsSetStats (void) const
	statistics "stats" field holds stats for all chromosomes combined: Check if a value has been assigned to Stats data member. More...
bool	CGC_AssemblySet_Base::CanGetStats (void) const
	Check if it is safe to call GetStats method. More...
void	CGC_AssemblySet_Base::ResetStats (void)
	Reset Stats data member. More...
const TStats &	CGC_AssemblySet_Base::GetStats (void) const
	Get the Stats member data. More...
void	CGC_AssemblySet_Base::SetStats (TStats &value)
	Assign a value to Stats data member. More...
TStats &	CGC_AssemblySet_Base::SetStats (void)
	Assign a value to Stats data member. More...
virtual void	CGC_AssemblySet_Base::Reset (void)
	Reset the whole object. More...
	CGC_AssemblySet_Base::CGC_AssemblySet_Base (const CGC_AssemblySet_Base &)
CGC_AssemblySet_Base &	CGC_AssemblySet_Base::operator= (const CGC_AssemblySet_Base &)
	CGC_AssemblyUnit_Base::CGC_AssemblyUnit_Base (void)
virtual	CGC_AssemblyUnit_Base::~CGC_AssemblyUnit_Base (void)
	CGC_AssemblyUnit_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CGC_AssemblyUnit_Base::EClass (void)
	Access to EClass's attributes (values, names) as defined in spec. More...
bool	CGC_AssemblyUnit_Base::IsSetId (void) const
	The identifier of this assembly Contains: GenColl internal id, GenColl accession.version, AGP id, UCSC name, Ensembl name Types of DbTags used: db "GenColl", tag id <assembly-release-id> db "GenColl", tag str <assembly-accession.version> db "AGP", tag id <agp-sumbission-id> db "GenColl_Chain", tag id <assembly-chain-id> "Ensembl_name" and "UCSC_name" will not appear in the Unit level since these organizations do not define assembly-units. More...
bool	CGC_AssemblyUnit_Base::CanGetId (void) const
	Check if it is safe to call GetId method. More...
void	CGC_AssemblyUnit_Base::ResetId (void)
	Reset Id data member. More...
const TId &	CGC_AssemblyUnit_Base::GetId (void) const
	Get the Id member data. More...
TId &	CGC_AssemblyUnit_Base::SetId (void)
	Assign a value to Id data member. More...
bool	CGC_AssemblyUnit_Base::IsSetClass (void) const
	Check if a value has been assigned to Class data member. More...
bool	CGC_AssemblyUnit_Base::CanGetClass (void) const
	Check if it is safe to call GetClass method. More...
void	CGC_AssemblyUnit_Base::ResetClass (void)
	Reset Class data member. More...
TClass	CGC_AssemblyUnit_Base::GetClass (void) const
	Get the Class member data. More...
void	CGC_AssemblyUnit_Base::SetClass (TClass value)
	Assign a value to Class data member. More...
TClass &	CGC_AssemblyUnit_Base::SetClass (void)
	Assign a value to Class data member. More...
bool	CGC_AssemblyUnit_Base::IsSetDesc (void) const
	descriptors live in a shared data block Check if a value has been assigned to Desc data member. More...
bool	CGC_AssemblyUnit_Base::CanGetDesc (void) const
	Check if it is safe to call GetDesc method. More...
void	CGC_AssemblyUnit_Base::ResetDesc (void)
	Reset Desc data member. More...
const TDesc &	CGC_AssemblyUnit_Base::GetDesc (void) const
	Get the Desc member data. More...
void	CGC_AssemblyUnit_Base::SetDesc (TDesc &value)
	Assign a value to Desc data member. More...
TDesc &	CGC_AssemblyUnit_Base::SetDesc (void)
	Assign a value to Desc data member. More...
bool	CGC_AssemblyUnit_Base::IsSetMols (void) const
	collections of molecules for this assembly Check if a value has been assigned to Mols data member. More...
bool	CGC_AssemblyUnit_Base::CanGetMols (void) const
	Check if it is safe to call GetMols method. More...
void	CGC_AssemblyUnit_Base::ResetMols (void)
	Reset Mols data member. More...
const TMols &	CGC_AssemblyUnit_Base::GetMols (void) const
	Get the Mols member data. More...
TMols &	CGC_AssemblyUnit_Base::SetMols (void)
	Assign a value to Mols data member. More...
bool	CGC_AssemblyUnit_Base::IsSetOther_sequences (void) const
	On primary assembly-unit: here will be the unplaced sequences On alt-loci: list of sequences aligned/unaligned to primary unit Check if a value has been assigned to Other_sequences data member. More...
bool	CGC_AssemblyUnit_Base::CanGetOther_sequences (void) const
	Check if it is safe to call GetOther_sequences method. More...
void	CGC_AssemblyUnit_Base::ResetOther_sequences (void)
	Reset Other_sequences data member. More...
const TOther_sequences &	CGC_AssemblyUnit_Base::GetOther_sequences (void) const
	Get the Other_sequences member data. More...
TOther_sequences &	CGC_AssemblyUnit_Base::SetOther_sequences (void)
	Assign a value to Other_sequences data member. More...
bool	CGC_AssemblyUnit_Base::IsSetStats (void) const
	statistics "stats" field holds stats for all chromosomes combined: ordered/unordered scaffolds "unplaced-stats" holds stats for ChrUn which is omitted from "stats" Check if a value has been assigned to Stats data member. More...
bool	CGC_AssemblyUnit_Base::CanGetStats (void) const
	Check if it is safe to call GetStats method. More...
void	CGC_AssemblyUnit_Base::ResetStats (void)
	Reset Stats data member. More...
const TStats &	CGC_AssemblyUnit_Base::GetStats (void) const
	Get the Stats member data. More...
void	CGC_AssemblyUnit_Base::SetStats (TStats &value)
	Assign a value to Stats data member. More...
TStats &	CGC_AssemblyUnit_Base::SetStats (void)
	Assign a value to Stats data member. More...
bool	CGC_AssemblyUnit_Base::IsSetUnplaced_stats (void) const
	Check if a value has been assigned to Unplaced_stats data member. More...
bool	CGC_AssemblyUnit_Base::CanGetUnplaced_stats (void) const
	Check if it is safe to call GetUnplaced_stats method. More...
void	CGC_AssemblyUnit_Base::ResetUnplaced_stats (void)
	Reset Unplaced_stats data member. More...
const TUnplaced_stats &	CGC_AssemblyUnit_Base::GetUnplaced_stats (void) const
	Get the Unplaced_stats member data. More...
TUnplaced_stats &	CGC_AssemblyUnit_Base::SetUnplaced_stats (void)
	Assign a value to Unplaced_stats data member. More...
bool	CGC_AssemblyUnit_Base::IsSetUnplaced_unlocalized_stats (void) const
	Check if a value has been assigned to Unplaced_unlocalized_stats data member. More...
bool	CGC_AssemblyUnit_Base::CanGetUnplaced_unlocalized_stats (void) const
	Check if it is safe to call GetUnplaced_unlocalized_stats method. More...
void	CGC_AssemblyUnit_Base::ResetUnplaced_unlocalized_stats (void)
	Reset Unplaced_unlocalized_stats data member. More...
const TUnplaced_unlocalized_stats &	CGC_AssemblyUnit_Base::GetUnplaced_unlocalized_stats (void) const
	Get the Unplaced_unlocalized_stats member data. More...
TUnplaced_unlocalized_stats &	CGC_AssemblyUnit_Base::SetUnplaced_unlocalized_stats (void)
	Assign a value to Unplaced_unlocalized_stats data member. More...
virtual void	CGC_AssemblyUnit_Base::Reset (void)
	Reset the whole object. More...
	CGC_AssemblyUnit_Base::CGC_AssemblyUnit_Base (const CGC_AssemblyUnit_Base &)
CGC_AssemblyUnit_Base &	CGC_AssemblyUnit_Base::operator= (const CGC_AssemblyUnit_Base &)
	CGC_DbTagAlias::CGC_DbTagAlias (void)
	CGC_DbTagAlias::~CGC_DbTagAlias (void)
	CGC_DbTagAlias::CGC_DbTagAlias (const CGC_DbTagAlias &value)
CGC_DbTagAlias &	CGC_DbTagAlias::operator= (const CGC_DbTagAlias &value)
	CGC_DbTagAlias_Base::CGC_DbTagAlias_Base (void)
virtual	CGC_DbTagAlias_Base::~CGC_DbTagAlias_Base (void)
	CGC_DbTagAlias_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CGC_DbTagAlias_Base::ESimilarity (void)
	Access to ESimilarity's attributes (values, names) as defined in spec. More...
bool	CGC_DbTagAlias_Base::IsSetRefseq (void) const
	the refseq assembly release-id Check if a value has been assigned to Refseq data member. More...
bool	CGC_DbTagAlias_Base::CanGetRefseq (void) const
	Check if it is safe to call GetRefseq method. More...
void	CGC_DbTagAlias_Base::ResetRefseq (void)
	Reset Refseq data member. More...
const TRefseq &	CGC_DbTagAlias_Base::GetRefseq (void) const
	Get the Refseq member data. More...
void	CGC_DbTagAlias_Base::SetRefseq (TRefseq &value)
	Assign a value to Refseq data member. More...
TRefseq &	CGC_DbTagAlias_Base::SetRefseq (void)
	Assign a value to Refseq data member. More...
bool	CGC_DbTagAlias_Base::IsSetGenbank (void) const
	the genbank assembly release-id Check if a value has been assigned to Genbank data member. More...
bool	CGC_DbTagAlias_Base::CanGetGenbank (void) const
	Check if it is safe to call GetGenbank method. More...
void	CGC_DbTagAlias_Base::ResetGenbank (void)
	Reset Genbank data member. More...
const TGenbank &	CGC_DbTagAlias_Base::GetGenbank (void) const
	Get the Genbank member data. More...
void	CGC_DbTagAlias_Base::SetGenbank (TGenbank &value)
	Assign a value to Genbank data member. More...
TGenbank &	CGC_DbTagAlias_Base::SetGenbank (void)
	Assign a value to Genbank data member. More...
bool	CGC_DbTagAlias_Base::IsSetSimilarity (void) const
	Check if a value has been assigned to Similarity data member. More...
bool	CGC_DbTagAlias_Base::CanGetSimilarity (void) const
	Check if it is safe to call GetSimilarity method. More...
void	CGC_DbTagAlias_Base::ResetSimilarity (void)
	Reset Similarity data member. More...
TSimilarity	CGC_DbTagAlias_Base::GetSimilarity (void) const
	Get the Similarity member data. More...
void	CGC_DbTagAlias_Base::SetSimilarity (TSimilarity value)
	Assign a value to Similarity data member. More...
TSimilarity &	CGC_DbTagAlias_Base::SetSimilarity (void)
	Assign a value to Similarity data member. More...
virtual void	CGC_DbTagAlias_Base::Reset (void)
	Reset the whole object. More...
	CGC_DbTagAlias_Base::CGC_DbTagAlias_Base (const CGC_DbTagAlias_Base &)
CGC_DbTagAlias_Base &	CGC_DbTagAlias_Base::operator= (const CGC_DbTagAlias_Base &)
	CGC_External_Seqid::CGC_External_Seqid (void)
	CGC_External_Seqid::~CGC_External_Seqid (void)
	CGC_External_Seqid::CGC_External_Seqid (const CGC_External_Seqid &value)
CGC_External_Seqid &	CGC_External_Seqid::operator= (const CGC_External_Seqid &value)
	CGC_External_Seqid_Base::CGC_External_Seqid_Base (void)
virtual	CGC_External_Seqid_Base::~CGC_External_Seqid_Base (void)
	CGC_External_Seqid_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CGC_External_Seqid_Base::IsSetExternal (void) const
	Check if a value has been assigned to External data member. More...
bool	CGC_External_Seqid_Base::CanGetExternal (void) const
	Check if it is safe to call GetExternal method. More...
void	CGC_External_Seqid_Base::ResetExternal (void)
	Reset External data member. More...
const TExternal &	CGC_External_Seqid_Base::GetExternal (void) const
	Get the External member data. More...
void	CGC_External_Seqid_Base::SetExternal (const TExternal &value)
	Assign a value to External data member. More...
void	CGC_External_Seqid_Base::SetExternal (TExternal &&value)
TExternal &	CGC_External_Seqid_Base::SetExternal (void)
	Assign a value to External data member. More...
bool	CGC_External_Seqid_Base::IsSetId (void) const
	Check if a value has been assigned to Id data member. More...
bool	CGC_External_Seqid_Base::CanGetId (void) const
	Check if it is safe to call GetId method. More...
void	CGC_External_Seqid_Base::ResetId (void)
	Reset Id data member. More...
const TId &	CGC_External_Seqid_Base::GetId (void) const
	Get the Id member data. More...
void	CGC_External_Seqid_Base::SetId (TId &value)
	Assign a value to Id data member. More...
TId &	CGC_External_Seqid_Base::SetId (void)
	Assign a value to Id data member. More...
virtual void	CGC_External_Seqid_Base::Reset (void)
	Reset the whole object. More...
	CGC_External_Seqid_Base::CGC_External_Seqid_Base (const CGC_External_Seqid_Base &)
CGC_External_Seqid_Base &	CGC_External_Seqid_Base::operator= (const CGC_External_Seqid_Base &)
	CGC_Genome::CGC_Genome (void)
	CGC_Genome::~CGC_Genome (void)
	CGC_Genome::CGC_Genome (const CGC_Genome &value)
CGC_Genome &	CGC_Genome::operator= (const CGC_Genome &value)
	CGC_Genome_Base::CGC_Genome_Base (void)
virtual	CGC_Genome_Base::~CGC_Genome_Base (void)
	CGC_Genome_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CGC_Genome_Base::IsSetId (void) const
	Gencoll identifier for this genome Check if a value has been assigned to Id data member. More...
bool	CGC_Genome_Base::CanGetId (void) const
	Check if it is safe to call GetId method. More...
void	CGC_Genome_Base::ResetId (void)
	Reset Id data member. More...
const TId &	CGC_Genome_Base::GetId (void) const
	Get the Id member data. More...
TId &	CGC_Genome_Base::SetId (void)
	Assign a value to Id data member. More...
bool	CGC_Genome_Base::IsSetProjects (void) const
	project ID for this genome this is the ID for this asssembly and may reflect the submitter/source Check if a value has been assigned to Projects data member. More...
bool	CGC_Genome_Base::CanGetProjects (void) const
	Check if it is safe to call GetProjects method. More...
void	CGC_Genome_Base::ResetProjects (void)
	Reset Projects data member. More...
const TProjects &	CGC_Genome_Base::GetProjects (void) const
	Get the Projects member data. More...
TProjects &	CGC_Genome_Base::SetProjects (void)
	Assign a value to Projects data member. More...
bool	CGC_Genome_Base::IsSetDescr (void) const
	Various attributes assigned at this level: biosrc, comments, publications... More...
bool	CGC_Genome_Base::CanGetDescr (void) const
	Check if it is safe to call GetDescr method. More...
void	CGC_Genome_Base::ResetDescr (void)
	Reset Descr data member. More...
const TDescr &	CGC_Genome_Base::GetDescr (void) const
	Get the Descr member data. More...
void	CGC_Genome_Base::SetDescr (TDescr &value)
	Assign a value to Descr data member. More...
TDescr &	CGC_Genome_Base::SetDescr (void)
	Assign a value to Descr data member. More...
bool	CGC_Genome_Base::IsSetChr_names (void) const
	official list of chromosome names this should be the complete expected set of chromosomes regardless of whether they are represented in *any* genomic part Check if a value has been assigned to Chr_names data member. More...
bool	CGC_Genome_Base::CanGetChr_names (void) const
	Check if it is safe to call GetChr_names method. More...
void	CGC_Genome_Base::ResetChr_names (void)
	Reset Chr_names data member. More...
const TChr_names &	CGC_Genome_Base::GetChr_names (void) const
	Get the Chr_names member data. More...
TChr_names &	CGC_Genome_Base::SetChr_names (void)
	Assign a value to Chr_names data member. More...
bool	CGC_Genome_Base::IsSetParts (void) const
	the bits that make up this genome this preserves the expected display order Check if a value has been assigned to Parts data member. More...
bool	CGC_Genome_Base::CanGetParts (void) const
	Check if it is safe to call GetParts method. More...
void	CGC_Genome_Base::ResetParts (void)
	Reset Parts data member. More...
const TParts &	CGC_Genome_Base::GetParts (void) const
	Get the Parts member data. More...
TParts &	CGC_Genome_Base::SetParts (void)
	Assign a value to Parts data member. More...
virtual void	CGC_Genome_Base::Reset (void)
	Reset the whole object. More...
	CGC_Genome_Base::CGC_Genome_Base (const CGC_Genome_Base &)
CGC_Genome_Base &	CGC_Genome_Base::operator= (const CGC_Genome_Base &)
	CGC_GenomicPart::CGC_GenomicPart (void)
	CGC_GenomicPart::~CGC_GenomicPart (void)
	CGC_GenomicPart::CGC_GenomicPart (const CGC_GenomicPart &value)
CGC_GenomicPart &	CGC_GenomicPart::operator= (const CGC_GenomicPart &value)
	CGC_GenomicPart_Base::CGC_GenomicPart_Base (void)
virtual	CGC_GenomicPart_Base::~CGC_GenomicPart_Base (void)
	CGC_GenomicPart_Base::DECLARE_INTERNAL_TYPE_INFO ()
virtual void	CGC_GenomicPart_Base::Reset (void)
	Reset the whole object. More...
virtual void	CGC_GenomicPart_Base::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CGC_GenomicPart_Base::Which (void) const
	Which variant is currently selected. More...
void	CGC_GenomicPart_Base::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CGC_GenomicPart_Base::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CGC_GenomicPart_Base::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CGC_GenomicPart_Base::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CGC_GenomicPart_Base::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CGC_GenomicPart_Base::IsAssembly (void) const
	Check if variant Assembly is selected. More...
const TAssembly &	CGC_GenomicPart_Base::GetAssembly (void) const
	Get the variant data. More...
TAssembly &	CGC_GenomicPart_Base::SetAssembly (void)
	Select the variant. More...
void	CGC_GenomicPart_Base::SetAssembly (TAssembly &value)
	Select the variant and set its data. More...
bool	CGC_GenomicPart_Base::IsMol (void) const
	Check if variant Mol is selected. More...
const TMol &	CGC_GenomicPart_Base::GetMol (void) const
	Get the variant data. More...
TMol &	CGC_GenomicPart_Base::SetMol (void)
	Select the variant. More...
void	CGC_GenomicPart_Base::SetMol (TMol &value)
	Select the variant and set its data. More...
bool	CGC_GenomicPart_Base::IsSeqs (void) const
	Check if variant Seqs is selected. More...
const TSeqs &	CGC_GenomicPart_Base::GetSeqs (void) const
	Get the variant data. More...
TSeqs &	CGC_GenomicPart_Base::SetSeqs (void)
	Select the variant. More...
void	CGC_GenomicPart_Base::SetSeqs (TSeqs &value)
	Select the variant and set its data. More...
	CGC_GenomicPart_Base::CGC_GenomicPart_Base (const CGC_GenomicPart_Base &)
CGC_GenomicPart_Base &	CGC_GenomicPart_Base::operator= (const CGC_GenomicPart_Base &)
void	CGC_GenomicPart_Base::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
	CGC_Project::CGC_Project (void)
	CGC_Project::~CGC_Project (void)
	CGC_Project::CGC_Project (const CGC_Project &value)
CGC_Project &	CGC_Project::operator= (const CGC_Project &value)
	CGC_Project_Base::CGC_Project_Base (void)
virtual	CGC_Project_Base::~CGC_Project_Base (void)
	CGC_Project_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CGC_Project_Base::IsSetProject_role (void) const
	Genbank / Refseq Check if a value has been assigned to Project_role data member. More...
bool	CGC_Project_Base::CanGetProject_role (void) const
	Check if it is safe to call GetProject_role method. More...
void	CGC_Project_Base::ResetProject_role (void)
	Reset Project_role data member. More...
const TProject_role &	CGC_Project_Base::GetProject_role (void) const
	Get the Project_role member data. More...
void	CGC_Project_Base::SetProject_role (const TProject_role &value)
	Assign a value to Project_role data member. More...
void	CGC_Project_Base::SetProject_role (TProject_role &&value)
TProject_role &	CGC_Project_Base::SetProject_role (void)
	Assign a value to Project_role data member. More...
bool	CGC_Project_Base::IsSetProject_id (void) const
	Check if a value has been assigned to Project_id data member. More...
bool	CGC_Project_Base::CanGetProject_id (void) const
	Check if it is safe to call GetProject_id method. More...
void	CGC_Project_Base::ResetProject_id (void)
	Reset Project_id data member. More...
TProject_id	CGC_Project_Base::GetProject_id (void) const
	Get the Project_id member data. More...
void	CGC_Project_Base::SetProject_id (TProject_id value)
	Assign a value to Project_id data member. More...
TProject_id &	CGC_Project_Base::SetProject_id (void)
	Assign a value to Project_id data member. More...
virtual void	CGC_Project_Base::Reset (void)
	Reset the whole object. More...
	CGC_Project_Base::CGC_Project_Base (const CGC_Project_Base &)
CGC_Project_Base &	CGC_Project_Base::operator= (const CGC_Project_Base &)
	CGC_Query::CGC_Query (void)
	CGC_Query::~CGC_Query (void)
	CGC_Query::CGC_Query (const CGC_Query &value)
CGC_Query &	CGC_Query::operator= (const CGC_Query &value)
	CGC_Query_Base::CGC_Query_Base (void)
virtual	CGC_Query_Base::~CGC_Query_Base (void)
	CGC_Query_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CGC_Query_Base::IsSetParam (void) const
	Check if a value has been assigned to Param data member. More...
bool	CGC_Query_Base::CanGetParam (void) const
	Check if it is safe to call GetParam method. More...
void	CGC_Query_Base::ResetParam (void)
	Reset Param data member. More...
const TParam &	CGC_Query_Base::GetParam (void) const
	Get the Param member data. More...
void	CGC_Query_Base::SetParam (const TParam &value)
	Assign a value to Param data member. More...
void	CGC_Query_Base::SetParam (TParam &&value)
TParam &	CGC_Query_Base::SetParam (void)
	Assign a value to Param data member. More...
bool	CGC_Query_Base::IsSetValue (void) const
	Check if a value has been assigned to Value data member. More...
bool	CGC_Query_Base::CanGetValue (void) const
	Check if it is safe to call GetValue method. More...
void	CGC_Query_Base::ResetValue (void)
	Reset Value data member. More...
const TValue &	CGC_Query_Base::GetValue (void) const
	Get the Value member data. More...
void	CGC_Query_Base::SetValue (const TValue &value)
	Assign a value to Value data member. More...
void	CGC_Query_Base::SetValue (TValue &&value)
TValue &	CGC_Query_Base::SetValue (void)
	Assign a value to Value data member. More...
virtual void	CGC_Query_Base::Reset (void)
	Reset the whole object. More...
	CGC_Query_Base::CGC_Query_Base (const CGC_Query_Base &)
CGC_Query_Base &	CGC_Query_Base::operator= (const CGC_Query_Base &)
	CGC_Replicon_Base::CGC_Replicon_Base (void)
virtual	CGC_Replicon_Base::~CGC_Replicon_Base (void)
	CGC_Replicon_Base::DECLARE_INTERNAL_TYPE_INFO ()
	CGC_Replicon_Base::C_Sequence::C_Sequence (void)
	CGC_Replicon_Base::C_Sequence::~C_Sequence (void)
	CGC_Replicon_Base::C_Sequence::DECLARE_INTERNAL_TYPE_INFO ()
void	CGC_Replicon_Base::C_Sequence::Reset (void)
	Reset the whole object. More...
void	CGC_Replicon_Base::C_Sequence::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CGC_Replicon_Base::C_Sequence::Which (void) const
	Which variant is currently selected. More...
void	CGC_Replicon_Base::C_Sequence::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CGC_Replicon_Base::C_Sequence::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CGC_Replicon_Base::C_Sequence::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CGC_Replicon_Base::C_Sequence::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CGC_Replicon_Base::C_Sequence::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CGC_Replicon_Base::C_Sequence::IsSingle (void) const
	Check if variant Single is selected. More...
const TSingle &	CGC_Replicon_Base::C_Sequence::GetSingle (void) const
	Get the variant data. More...
TSingle &	CGC_Replicon_Base::C_Sequence::SetSingle (void)
	Select the variant. More...
void	CGC_Replicon_Base::C_Sequence::SetSingle (TSingle &value)
	Select the variant and set its data. More...
bool	CGC_Replicon_Base::C_Sequence::IsSet (void) const
	Check if variant Set is selected. More...
const TSet &	CGC_Replicon_Base::C_Sequence::GetSet (void) const
	Get the variant data. More...
TSet &	CGC_Replicon_Base::C_Sequence::SetSet (void)
	Select the variant. More...
	CGC_Replicon_Base::C_Sequence::C_Sequence (const C_Sequence &)
C_Sequence &	CGC_Replicon_Base::C_Sequence::operator= (const C_Sequence &)
void	CGC_Replicon_Base::C_Sequence::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
bool	CGC_Replicon_Base::IsSetName (void) const
	name for this molecule the official name, Check if a value has been assigned to Name data member. More...
bool	CGC_Replicon_Base::CanGetName (void) const
	Check if it is safe to call GetName method. More...
void	CGC_Replicon_Base::ResetName (void)
	Reset Name data member. More...
const TName &	CGC_Replicon_Base::GetName (void) const
	Get the Name member data. More...
void	CGC_Replicon_Base::SetName (const TName &value)
	Assign a value to Name data member. More...
void	CGC_Replicon_Base::SetName (TName &&value)
TName &	CGC_Replicon_Base::SetName (void)
	Assign a value to Name data member. More...
bool	CGC_Replicon_Base::IsSetLocal_name (void) const
	If the chromosome has a different name in this assembly. More...
bool	CGC_Replicon_Base::CanGetLocal_name (void) const
	Check if it is safe to call GetLocal_name method. More...
void	CGC_Replicon_Base::ResetLocal_name (void)
	Reset Local_name data member. More...
const TLocal_name &	CGC_Replicon_Base::GetLocal_name (void) const
	Get the Local_name member data. More...
void	CGC_Replicon_Base::SetLocal_name (const TLocal_name &value)
	Assign a value to Local_name data member. More...
void	CGC_Replicon_Base::SetLocal_name (TLocal_name &&value)
TLocal_name &	CGC_Replicon_Base::SetLocal_name (void)
	Assign a value to Local_name data member. More...
bool	CGC_Replicon_Base::IsSetSequence (void) const
	Check if a value has been assigned to Sequence data member. More...
bool	CGC_Replicon_Base::CanGetSequence (void) const
	Check if it is safe to call GetSequence method. More...
void	CGC_Replicon_Base::ResetSequence (void)
	Reset Sequence data member. More...
const TSequence &	CGC_Replicon_Base::GetSequence (void) const
	Get the Sequence member data. More...
void	CGC_Replicon_Base::SetSequence (TSequence &value)
	Assign a value to Sequence data member. More...
TSequence &	CGC_Replicon_Base::SetSequence (void)
	Assign a value to Sequence data member. More...
virtual void	CGC_Replicon_Base::Reset (void)
	Reset the whole object. More...
	CGC_Replicon_Base::CGC_Replicon_Base (const CGC_Replicon_Base &)
CGC_Replicon_Base &	CGC_Replicon_Base::operator= (const CGC_Replicon_Base &)
	CGC_Scaf_stats::CGC_Scaf_stats (void)
	CGC_Scaf_stats::~CGC_Scaf_stats (void)
	CGC_Scaf_stats::CGC_Scaf_stats (const CGC_Scaf_stats &value)
CGC_Scaf_stats &	CGC_Scaf_stats::operator= (const CGC_Scaf_stats &value)
	CGC_Scaf_stats_Base::CGC_Scaf_stats_Base (void)
virtual	CGC_Scaf_stats_Base::~CGC_Scaf_stats_Base (void)
	CGC_Scaf_stats_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CGC_Scaf_stats_Base::EStats_category (void)
	Access to EStats_category's attributes (values, names) as defined in spec. More...
bool	CGC_Scaf_stats_Base::IsSetStats_category (void) const
	Check if a value has been assigned to Stats_category data member. More...
bool	CGC_Scaf_stats_Base::CanGetStats_category (void) const
	Check if it is safe to call GetStats_category method. More...
void	CGC_Scaf_stats_Base::ResetStats_category (void)
	Reset Stats_category data member. More...
TStats_category	CGC_Scaf_stats_Base::GetStats_category (void) const
	Get the Stats_category member data. More...
void	CGC_Scaf_stats_Base::SetStats_category (TStats_category value)
	Assign a value to Stats_category data member. More...
TStats_category &	CGC_Scaf_stats_Base::SetStats_category (void)
	Assign a value to Stats_category data member. More...
bool	CGC_Scaf_stats_Base::IsSetValue (void) const
	Check if a value has been assigned to Value data member. More...
bool	CGC_Scaf_stats_Base::CanGetValue (void) const
	Check if it is safe to call GetValue method. More...
void	CGC_Scaf_stats_Base::ResetValue (void)
	Reset Value data member. More...
TValue	CGC_Scaf_stats_Base::GetValue (void) const
	Get the Value member data. More...
void	CGC_Scaf_stats_Base::SetValue (TValue value)
	Assign a value to Value data member. More...
TValue &	CGC_Scaf_stats_Base::SetValue (void)
	Assign a value to Value data member. More...
virtual void	CGC_Scaf_stats_Base::Reset (void)
	Reset the whole object. More...
	CGC_Scaf_stats_Base::CGC_Scaf_stats_Base (const CGC_Scaf_stats_Base &)
CGC_Scaf_stats_Base &	CGC_Scaf_stats_Base::operator= (const CGC_Scaf_stats_Base &)
	CGC_SeqIdAlias_Base::CGC_SeqIdAlias_Base (void)
virtual	CGC_SeqIdAlias_Base::~CGC_SeqIdAlias_Base (void)
	CGC_SeqIdAlias_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CGC_SeqIdAlias_Base::ESimilarity (void)
	Access to ESimilarity's attributes (values, names) as defined in spec. More...
bool	CGC_SeqIdAlias_Base::IsSetPublic (void) const
	the refseq/genbank accession Check if a value has been assigned to Public data member. More...
bool	CGC_SeqIdAlias_Base::CanGetPublic (void) const
	Check if it is safe to call GetPublic method. More...
void	CGC_SeqIdAlias_Base::ResetPublic (void)
	Reset Public data member. More...
const TPublic &	CGC_SeqIdAlias_Base::GetPublic (void) const
	Get the Public member data. More...
void	CGC_SeqIdAlias_Base::SetPublic (TPublic &value)
	Assign a value to Public data member. More...
TPublic &	CGC_SeqIdAlias_Base::SetPublic (void)
	Assign a value to Public data member. More...
bool	CGC_SeqIdAlias_Base::IsSetGpipe (void) const
	the gpipe accession Check if a value has been assigned to Gpipe data member. More...
bool	CGC_SeqIdAlias_Base::CanGetGpipe (void) const
	Check if it is safe to call GetGpipe method. More...
void	CGC_SeqIdAlias_Base::ResetGpipe (void)
	Reset Gpipe data member. More...
const TGpipe &	CGC_SeqIdAlias_Base::GetGpipe (void) const
	Get the Gpipe member data. More...
void	CGC_SeqIdAlias_Base::SetGpipe (TGpipe &value)
	Assign a value to Gpipe data member. More...
TGpipe &	CGC_SeqIdAlias_Base::SetGpipe (void)
	Assign a value to Gpipe data member. More...
bool	CGC_SeqIdAlias_Base::IsSetGi (void) const
	optional since not all sequences have GIs Similarity: relationship between this synonym to main seqid of the GC-Sequence Can be expanded to multiple level of identicality can use bitmap to flag ambiguity between different levels Check if a value has been assigned to Gi data member. More...
bool	CGC_SeqIdAlias_Base::CanGetGi (void) const
	Check if it is safe to call GetGi method. More...
void	CGC_SeqIdAlias_Base::ResetGi (void)
	Reset Gi data member. More...
const TGi &	CGC_SeqIdAlias_Base::GetGi (void) const
	Get the Gi member data. More...
void	CGC_SeqIdAlias_Base::SetGi (TGi &value)
	Assign a value to Gi data member. More...
TGi &	CGC_SeqIdAlias_Base::SetGi (void)
	Assign a value to Gi data member. More...
bool	CGC_SeqIdAlias_Base::IsSetSimilarity (void) const
	Check if a value has been assigned to Similarity data member. More...
bool	CGC_SeqIdAlias_Base::CanGetSimilarity (void) const
	Check if it is safe to call GetSimilarity method. More...
void	CGC_SeqIdAlias_Base::ResetSimilarity (void)
	Reset Similarity data member. More...
TSimilarity	CGC_SeqIdAlias_Base::GetSimilarity (void) const
	Get the Similarity member data. More...
void	CGC_SeqIdAlias_Base::SetSimilarity (TSimilarity value)
	Assign a value to Similarity data member. More...
TSimilarity &	CGC_SeqIdAlias_Base::SetSimilarity (void)
	Assign a value to Similarity data member. More...
virtual void	CGC_SeqIdAlias_Base::Reset (void)
	Reset the whole object. More...
	CGC_SeqIdAlias_Base::CGC_SeqIdAlias_Base (const CGC_SeqIdAlias_Base &)
CGC_SeqIdAlias_Base &	CGC_SeqIdAlias_Base::operator= (const CGC_SeqIdAlias_Base &)
	CGC_Sequence_Base::CGC_Sequence_Base (void)
virtual	CGC_Sequence_Base::~CGC_Sequence_Base (void)
	CGC_Sequence_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CGC_Sequence_Base::EPatch_type (void)
	Access to EPatch_type's attributes (values, names) as defined in spec. More...
bool	CGC_Sequence_Base::IsSetSeq_id (void) const
	identifiers are: Local / gpipe-satellite / genbank / refseq local is merely local name (or maybe with WGS accession??) others are accession/ver/gi More...
bool	CGC_Sequence_Base::CanGetSeq_id (void) const
	Check if it is safe to call GetSeq_id method. More...
void	CGC_Sequence_Base::ResetSeq_id (void)
	Reset Seq_id data member. More...
const TSeq_id &	CGC_Sequence_Base::GetSeq_id (void) const
	Get the Seq_id member data. More...
void	CGC_Sequence_Base::SetSeq_id (TSeq_id &value)
	Assign a value to Seq_id data member. More...
TSeq_id &	CGC_Sequence_Base::SetSeq_id (void)
	Assign a value to Seq_id data member. More...
bool	CGC_Sequence_Base::IsSetSeq_id_synonyms (void) const
	Other known identifiers: Local / gpipe-satellite / genbank / refseq Check if a value has been assigned to Seq_id_synonyms data member. More...
bool	CGC_Sequence_Base::CanGetSeq_id_synonyms (void) const
	Check if it is safe to call GetSeq_id_synonyms method. More...
void	CGC_Sequence_Base::ResetSeq_id_synonyms (void)
	Reset Seq_id_synonyms data member. More...
const TSeq_id_synonyms &	CGC_Sequence_Base::GetSeq_id_synonyms (void) const
	Get the Seq_id_synonyms member data. More...
TSeq_id_synonyms &	CGC_Sequence_Base::SetSeq_id_synonyms (void)
	Assign a value to Seq_id_synonyms data member. More...
bool	CGC_Sequence_Base::IsSetDescr (void) const
	Various attributes assigned at this level: biosrc, comments, publications... More...
bool	CGC_Sequence_Base::CanGetDescr (void) const
	Check if it is safe to call GetDescr method. More...
void	CGC_Sequence_Base::ResetDescr (void)
	Reset Descr data member. More...
const TDescr &	CGC_Sequence_Base::GetDescr (void) const
	Get the Descr member data. More...
void	CGC_Sequence_Base::SetDescr (TDescr &value)
	Assign a value to Descr data member. More...
TDescr &	CGC_Sequence_Base::SetDescr (void)
	Assign a value to Descr data member. More...
bool	CGC_Sequence_Base::IsSetAnnot (void) const
	Feature annotation; Contains Pseudo Autosomal regions on chromosomes and scaffolds in the following format: Id = <ID of PAR (ex:"PAR#1")> Desc (set of Annot-descr) Name: "pseudo autosomal region" Region (seq-loc): int (seq-interval) Id: <GI of chromosome> From: <start-position of region> To : <end-position of region> Data: locs (set of seq-loc): List of int (seq-interval): Id: GI of scaffold From/to: position on scaffold that belongs to this PAR region. More...
bool	CGC_Sequence_Base::CanGetAnnot (void) const
	Check if it is safe to call GetAnnot method. More...
void	CGC_Sequence_Base::ResetAnnot (void)
	Reset Annot data member. More...
const TAnnot &	CGC_Sequence_Base::GetAnnot (void) const
	Get the Annot member data. More...
TAnnot &	CGC_Sequence_Base::SetAnnot (void)
	Assign a value to Annot data member. More...
bool	CGC_Sequence_Base::IsSetSequences (void) const
	placed: populated both on chromosome and scaffold levels unlocalized: populated on chromosome level Check if a value has been assigned to Sequences data member. More...
bool	CGC_Sequence_Base::CanGetSequences (void) const
	Check if it is safe to call GetSequences method. More...
void	CGC_Sequence_Base::ResetSequences (void)
	Reset Sequences data member. More...
const TSequences &	CGC_Sequence_Base::GetSequences (void) const
	Get the Sequences member data. More...
TSequences &	CGC_Sequence_Base::SetSequences (void)
	Assign a value to Sequences data member. More...
bool	CGC_Sequence_Base::IsSetStructure (void) const
	locations of ordered scaffolds/components Check if a value has been assigned to Structure data member. More...
bool	CGC_Sequence_Base::CanGetStructure (void) const
	Check if it is safe to call GetStructure method. More...
void	CGC_Sequence_Base::ResetStructure (void)
	Reset Structure data member. More...
const TStructure &	CGC_Sequence_Base::GetStructure (void) const
	Get the Structure member data. More...
void	CGC_Sequence_Base::SetStructure (TStructure &value)
	Assign a value to Structure data member. More...
TStructure &	CGC_Sequence_Base::SetStructure (void)
	Assign a value to Structure data member. More...
bool	CGC_Sequence_Base::IsSetStats (void) const
	statistics Check if a value has been assigned to Stats data member. More...
bool	CGC_Sequence_Base::CanGetStats (void) const
	Check if it is safe to call GetStats method. More...
void	CGC_Sequence_Base::ResetStats (void)
	Reset Stats data member. More...
const TStats &	CGC_Sequence_Base::GetStats (void) const
	Get the Stats member data. More...
void	CGC_Sequence_Base::SetStats (TStats &value)
	Assign a value to Stats data member. More...
TStats &	CGC_Sequence_Base::SetStats (void)
	Assign a value to Stats data member. More...
bool	CGC_Sequence_Base::IsSetPatch_type (void) const
	Check if a value has been assigned to Patch_type data member. More...
bool	CGC_Sequence_Base::CanGetPatch_type (void) const
	Check if it is safe to call GetPatch_type method. More...
void	CGC_Sequence_Base::ResetPatch_type (void)
	Reset Patch_type data member. More...
TPatch_type	CGC_Sequence_Base::GetPatch_type (void) const
	Get the Patch_type member data. More...
void	CGC_Sequence_Base::SetPatch_type (TPatch_type value)
	Assign a value to Patch_type data member. More...
TPatch_type &	CGC_Sequence_Base::SetPatch_type (void)
	Assign a value to Patch_type data member. More...
bool	CGC_Sequence_Base::IsSetRoles (void) const
	sequence-role: what role(s) does this sequence have in the assembly Check if a value has been assigned to Roles data member. More...
bool	CGC_Sequence_Base::CanGetRoles (void) const
	Check if it is safe to call GetRoles method. More...
void	CGC_Sequence_Base::ResetRoles (void)
	Reset Roles data member. More...
const TRoles &	CGC_Sequence_Base::GetRoles (void) const
	Get the Roles member data. More...
TRoles &	CGC_Sequence_Base::SetRoles (void)
	Assign a value to Roles data member. More...
virtual void	CGC_Sequence_Base::Reset (void)
	Reset the whole object. More...
	CGC_Sequence_Base::CGC_Sequence_Base (const CGC_Sequence_Base &)
CGC_Sequence_Base &	CGC_Sequence_Base::operator= (const CGC_Sequence_Base &)
	CGC_SequenceStats::CGC_SequenceStats (void)
	CGC_SequenceStats::~CGC_SequenceStats (void)
	CGC_SequenceStats::CGC_SequenceStats (const CGC_SequenceStats &value)
CGC_SequenceStats &	CGC_SequenceStats::operator= (const CGC_SequenceStats &value)
	CGC_SequenceStats_Base::CGC_SequenceStats_Base (void)
virtual	CGC_SequenceStats_Base::~CGC_SequenceStats_Base (void)
	CGC_SequenceStats_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CGC_SequenceStats_Base::IsSetAll_scaf (void) const
	Check if a value has been assigned to All_scaf data member. More...
bool	CGC_SequenceStats_Base::CanGetAll_scaf (void) const
	Check if it is safe to call GetAll_scaf method. More...
void	CGC_SequenceStats_Base::ResetAll_scaf (void)
	Reset All_scaf data member. More...
const TAll_scaf &	CGC_SequenceStats_Base::GetAll_scaf (void) const
	Get the All_scaf member data. More...
TAll_scaf &	CGC_SequenceStats_Base::SetAll_scaf (void)
	Assign a value to All_scaf data member. More...
bool	CGC_SequenceStats_Base::IsSetOrdered_scaf (void) const
	Check if a value has been assigned to Ordered_scaf data member. More...
bool	CGC_SequenceStats_Base::CanGetOrdered_scaf (void) const
	Check if it is safe to call GetOrdered_scaf method. More...
void	CGC_SequenceStats_Base::ResetOrdered_scaf (void)
	Reset Ordered_scaf data member. More...
const TOrdered_scaf &	CGC_SequenceStats_Base::GetOrdered_scaf (void) const
	Get the Ordered_scaf member data. More...
TOrdered_scaf &	CGC_SequenceStats_Base::SetOrdered_scaf (void)
	Assign a value to Ordered_scaf data member. More...
bool	CGC_SequenceStats_Base::IsSetUnordered_scaf (void) const
	Check if a value has been assigned to Unordered_scaf data member. More...
bool	CGC_SequenceStats_Base::CanGetUnordered_scaf (void) const
	Check if it is safe to call GetUnordered_scaf method. More...
void	CGC_SequenceStats_Base::ResetUnordered_scaf (void)
	Reset Unordered_scaf data member. More...
const TUnordered_scaf &	CGC_SequenceStats_Base::GetUnordered_scaf (void) const
	Get the Unordered_scaf member data. More...
TUnordered_scaf &	CGC_SequenceStats_Base::SetUnordered_scaf (void)
	Assign a value to Unordered_scaf data member. More...
bool	CGC_SequenceStats_Base::IsSetUnplaced_scaf (void) const
	unplaced at full assembly level Check if a value has been assigned to Unplaced_scaf data member. More...
bool	CGC_SequenceStats_Base::CanGetUnplaced_scaf (void) const
	Check if it is safe to call GetUnplaced_scaf method. More...
void	CGC_SequenceStats_Base::ResetUnplaced_scaf (void)
	Reset Unplaced_scaf data member. More...
const TUnplaced_scaf &	CGC_SequenceStats_Base::GetUnplaced_scaf (void) const
	Get the Unplaced_scaf member data. More...
TUnplaced_scaf &	CGC_SequenceStats_Base::SetUnplaced_scaf (void)
	Assign a value to Unplaced_scaf data member. More...
bool	CGC_SequenceStats_Base::IsSetAligned_scaf (void) const
	aligned at full assembly level Check if a value has been assigned to Aligned_scaf data member. More...
bool	CGC_SequenceStats_Base::CanGetAligned_scaf (void) const
	Check if it is safe to call GetAligned_scaf method. More...
void	CGC_SequenceStats_Base::ResetAligned_scaf (void)
	Reset Aligned_scaf data member. More...
const TAligned_scaf &	CGC_SequenceStats_Base::GetAligned_scaf (void) const
	Get the Aligned_scaf member data. More...
TAligned_scaf &	CGC_SequenceStats_Base::SetAligned_scaf (void)
	Assign a value to Aligned_scaf data member. More...
bool	CGC_SequenceStats_Base::IsSetUnaligned_scaf (void) const
	unaligned at full assembly level Check if a value has been assigned to Unaligned_scaf data member. More...
bool	CGC_SequenceStats_Base::CanGetUnaligned_scaf (void) const
	Check if it is safe to call GetUnaligned_scaf method. More...
void	CGC_SequenceStats_Base::ResetUnaligned_scaf (void)
	Reset Unaligned_scaf data member. More...
const TUnaligned_scaf &	CGC_SequenceStats_Base::GetUnaligned_scaf (void) const
	Get the Unaligned_scaf member data. More...
TUnaligned_scaf &	CGC_SequenceStats_Base::SetUnaligned_scaf (void)
	Assign a value to Unaligned_scaf data member. More...
virtual void	CGC_SequenceStats_Base::Reset (void)
	Reset the whole object. More...
	CGC_SequenceStats_Base::CGC_SequenceStats_Base (const CGC_SequenceStats_Base &)
CGC_SequenceStats_Base &	CGC_SequenceStats_Base::operator= (const CGC_SequenceStats_Base &)
	CGC_TaggedSequences::CGC_TaggedSequences (void)
	CGC_TaggedSequences::~CGC_TaggedSequences (void)
	CGC_TaggedSequences::CGC_TaggedSequences (const CGC_TaggedSequences &value)
CGC_TaggedSequences &	CGC_TaggedSequences::operator= (const CGC_TaggedSequences &value)
	CGC_TaggedSequences_Base::CGC_TaggedSequences_Base (void)
virtual	CGC_TaggedSequences_Base::~CGC_TaggedSequences_Base (void)
	CGC_TaggedSequences_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CGC_TaggedSequences_Base::EState (void)
	Access to EState's attributes (values, names) as defined in spec. More...
bool	CGC_TaggedSequences_Base::IsSetState (void) const
	Check if a value has been assigned to State data member. More...
bool	CGC_TaggedSequences_Base::CanGetState (void) const
	Check if it is safe to call GetState method. More...
void	CGC_TaggedSequences_Base::ResetState (void)
	Reset State data member. More...
TState	CGC_TaggedSequences_Base::GetState (void) const
	Get the State member data. More...
void	CGC_TaggedSequences_Base::SetState (TState value)
	Assign a value to State data member. More...
TState &	CGC_TaggedSequences_Base::SetState (void)
	Assign a value to State data member. More...
bool	CGC_TaggedSequences_Base::IsSetSeqs (void) const
	Check if a value has been assigned to Seqs data member. More...
bool	CGC_TaggedSequences_Base::CanGetSeqs (void) const
	Check if it is safe to call GetSeqs method. More...
void	CGC_TaggedSequences_Base::ResetSeqs (void)
	Reset Seqs data member. More...
const TSeqs &	CGC_TaggedSequences_Base::GetSeqs (void) const
	Get the Seqs member data. More...
TSeqs &	CGC_TaggedSequences_Base::SetSeqs (void)
	Assign a value to Seqs data member. More...
virtual void	CGC_TaggedSequences_Base::Reset (void)
	Reset the whole object. More...
	CGC_TaggedSequences_Base::CGC_TaggedSequences_Base (const CGC_TaggedSequences_Base &)
CGC_TaggedSequences_Base &	CGC_TaggedSequences_Base::operator= (const CGC_TaggedSequences_Base &)
	CGC_TypedSeqId::CGC_TypedSeqId (void)
	CGC_TypedSeqId::~CGC_TypedSeqId (void)
	CGC_TypedSeqId::CGC_TypedSeqId (const CGC_TypedSeqId &value)
CGC_TypedSeqId &	CGC_TypedSeqId::operator= (const CGC_TypedSeqId &value)
	CGC_TypedSeqId_Base::CGC_TypedSeqId_Base (void)
virtual	CGC_TypedSeqId_Base::~CGC_TypedSeqId_Base (void)
	CGC_TypedSeqId_Base::DECLARE_INTERNAL_TYPE_INFO ()
virtual void	CGC_TypedSeqId_Base::Reset (void)
	Reset the whole object. More...
virtual void	CGC_TypedSeqId_Base::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CGC_TypedSeqId_Base::Which (void) const
	Which variant is currently selected. More...
void	CGC_TypedSeqId_Base::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CGC_TypedSeqId_Base::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CGC_TypedSeqId_Base::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CGC_TypedSeqId_Base::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CGC_TypedSeqId_Base::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CGC_TypedSeqId_Base::IsGenbank (void) const
	Check if variant Genbank is selected. More...
const TGenbank &	CGC_TypedSeqId_Base::GetGenbank (void) const
	Get the variant data. More...
TGenbank &	CGC_TypedSeqId_Base::SetGenbank (void)
	Select the variant. More...
void	CGC_TypedSeqId_Base::SetGenbank (TGenbank &value)
	Select the variant and set its data. More...
bool	CGC_TypedSeqId_Base::IsRefseq (void) const
	Check if variant Refseq is selected. More...
const TRefseq &	CGC_TypedSeqId_Base::GetRefseq (void) const
	Get the variant data. More...
TRefseq &	CGC_TypedSeqId_Base::SetRefseq (void)
	Select the variant. More...
void	CGC_TypedSeqId_Base::SetRefseq (TRefseq &value)
	Select the variant and set its data. More...
bool	CGC_TypedSeqId_Base::IsPrivate (void) const
	Check if variant Private is selected. More...
const TPrivate &	CGC_TypedSeqId_Base::GetPrivate (void) const
	Get the variant data. More...
TPrivate &	CGC_TypedSeqId_Base::SetPrivate (void)
	Select the variant. More...
void	CGC_TypedSeqId_Base::SetPrivate (TPrivate &value)
	Select the variant and set its data. More...
bool	CGC_TypedSeqId_Base::IsExternal (void) const
	Check if variant External is selected. More...
const TExternal &	CGC_TypedSeqId_Base::GetExternal (void) const
	Get the variant data. More...
TExternal &	CGC_TypedSeqId_Base::SetExternal (void)
	Select the variant. More...
void	CGC_TypedSeqId_Base::SetExternal (TExternal &value)
	Select the variant and set its data. More...
	CGC_TypedSeqId_Base::CGC_TypedSeqId_Base (const CGC_TypedSeqId_Base &)
CGC_TypedSeqId_Base &	CGC_TypedSeqId_Base::operator= (const CGC_TypedSeqId_Base &)
void	CGC_TypedSeqId_Base::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)

Variables
Uint4	CGC_Assemblies_Base::m_set_State [1]
list< CRef< CGC_Query > >	CGC_Assemblies_Base::m_Query
list< CRef< CGC_Assembly > >	CGC_Assemblies_Base::m_Assemblies
E_Choice	CGC_Assembly_Base::m_choice
static const char *const	CGC_Assembly_Base::sm_SelectionNames []
NCBI_NS_NCBI::CSerialObject *	CGC_Assembly_Base::m_object
Uint4	CGC_AssemblyDesc_Base::m_set_State [2]
list< CRef< CGC_Project > >	CGC_AssemblyDesc_Base::m_Projects
string	CGC_AssemblyDesc_Base::m_Name
string	CGC_AssemblyDesc_Base::m_Submitter_name
string	CGC_AssemblyDesc_Base::m_Display_name
CStringUTF8	CGC_AssemblyDesc_Base::m_Long_name
string	CGC_AssemblyDesc_Base::m_Filesafe_name
string	CGC_AssemblyDesc_Base::m_Wgs_acc_prefix
int	CGC_AssemblyDesc_Base::m_Wgs_acc_number
int	CGC_AssemblyDesc_Base::m_Release_type
int	CGC_AssemblyDesc_Base::m_Release_status
list< CRef< CSeq_annot > >	CGC_AssemblyDesc_Base::m_Annot
list< CRef< CGC_DbTagAlias > >	CGC_AssemblyDesc_Base::m_Synonyms
CRef< TSubmitter_date >	CGC_AssemblyDesc_Base::m_Submitter_date
CRef< TDescr >	CGC_AssemblyDesc_Base::m_Descr
bool	CGC_AssemblyDesc_Base::m_Partial
double	CGC_AssemblyDesc_Base::m_Coverage
int	CGC_AssemblyDesc_Base::m_Release_level
CStringUTF8	CGC_AssemblyDesc_Base::m_Submitter_organization
Uint4	CGC_AssemblySet_Base::m_set_State [1]
list< CRef< CDbtag > >	CGC_AssemblySet_Base::m_Id
int	CGC_AssemblySet_Base::m_Set_type
int	CGC_AssemblySet_Base::m_Class
CRef< TDesc >	CGC_AssemblySet_Base::m_Desc
CRef< TPrimary_assembly >	CGC_AssemblySet_Base::m_Primary_assembly
list< CRef< CGC_Assembly > >	CGC_AssemblySet_Base::m_More_assemblies
CRef< TStats >	CGC_AssemblySet_Base::m_Stats
Uint4	CGC_AssemblyUnit_Base::m_set_State [1]
list< CRef< CDbtag > >	CGC_AssemblyUnit_Base::m_Id
int	CGC_AssemblyUnit_Base::m_Class
CRef< TDesc >	CGC_AssemblyUnit_Base::m_Desc
list< CRef< CGC_Replicon > >	CGC_AssemblyUnit_Base::m_Mols
list< CRef< CGC_TaggedSequences > >	CGC_AssemblyUnit_Base::m_Other_sequences
CRef< TStats >	CGC_AssemblyUnit_Base::m_Stats
list< CRef< CGC_Scaf_stats > >	CGC_AssemblyUnit_Base::m_Unplaced_stats
list< CRef< CGC_Scaf_stats > >	CGC_AssemblyUnit_Base::m_Unplaced_unlocalized_stats
Uint4	CGC_DbTagAlias_Base::m_set_State [1]
CRef< TRefseq >	CGC_DbTagAlias_Base::m_Refseq
CRef< TGenbank >	CGC_DbTagAlias_Base::m_Genbank
int	CGC_DbTagAlias_Base::m_Similarity
Uint4	CGC_External_Seqid_Base::m_set_State [1]
string	CGC_External_Seqid_Base::m_External
CRef< TId >	CGC_External_Seqid_Base::m_Id
Uint4	CGC_Genome_Base::m_set_State [1]
list< CRef< CDbtag > >	CGC_Genome_Base::m_Id
list< CRef< CGC_Project > >	CGC_Genome_Base::m_Projects
CRef< TDescr >	CGC_Genome_Base::m_Descr
list< string >	CGC_Genome_Base::m_Chr_names
list< CRef< CGC_GenomicPart > >	CGC_Genome_Base::m_Parts
E_Choice	CGC_GenomicPart_Base::m_choice
static const char *const	CGC_GenomicPart_Base::sm_SelectionNames []
NCBI_NS_NCBI::CSerialObject *	CGC_GenomicPart_Base::m_object
Uint4	CGC_Project_Base::m_set_State [1]
string	CGC_Project_Base::m_Project_role
int	CGC_Project_Base::m_Project_id
Uint4	CGC_Query_Base::m_set_State [1]
string	CGC_Query_Base::m_Param
string	CGC_Query_Base::m_Value
E_Choice	CGC_Replicon_Base::C_Sequence::m_choice
static const char *const	CGC_Replicon_Base::C_Sequence::sm_SelectionNames []
NCBI_NS_NCBI::CUnionBuffer< TSet >   CGC_Replicon_Base::C_Sequence::m_Set
NCBI_NS_NCBI::CSerialObject *   CGC_Replicon_Base::C_Sequence::m_object
union {
NCBI_NS_NCBI::CUnionBuffer< TSet >   CGC_Replicon_Base::C_Sequence::m_Set
NCBI_NS_NCBI::CSerialObject *   CGC_Replicon_Base::C_Sequence::m_object
};
Uint4	CGC_Replicon_Base::m_set_State [1]
string	CGC_Replicon_Base::m_Name
string	CGC_Replicon_Base::m_Local_name
CRef< TSequence >	CGC_Replicon_Base::m_Sequence
Uint4	CGC_Scaf_stats_Base::m_set_State [1]
int	CGC_Scaf_stats_Base::m_Stats_category
Uint8	CGC_Scaf_stats_Base::m_Value
Uint4	CGC_SeqIdAlias_Base::m_set_State [1]
CRef< TPublic >	CGC_SeqIdAlias_Base::m_Public
CRef< TGpipe >	CGC_SeqIdAlias_Base::m_Gpipe
CRef< TGi >	CGC_SeqIdAlias_Base::m_Gi
int	CGC_SeqIdAlias_Base::m_Similarity
Uint4	CGC_Sequence_Base::m_set_State [1]
CRef< TSeq_id >	CGC_Sequence_Base::m_Seq_id
list< CRef< CGC_TypedSeqId > >	CGC_Sequence_Base::m_Seq_id_synonyms
CRef< TDescr >	CGC_Sequence_Base::m_Descr
list< CRef< CSeq_annot > >	CGC_Sequence_Base::m_Annot
list< CRef< CGC_TaggedSequences > >	CGC_Sequence_Base::m_Sequences
CRef< TStructure >	CGC_Sequence_Base::m_Structure
CRef< TStats >	CGC_Sequence_Base::m_Stats
int	CGC_Sequence_Base::m_Patch_type
list< int >	CGC_Sequence_Base::m_Roles
Uint4	CGC_SequenceStats_Base::m_set_State [1]
list< CRef< CGC_Scaf_stats > >	CGC_SequenceStats_Base::m_All_scaf
list< CRef< CGC_Scaf_stats > >	CGC_SequenceStats_Base::m_Ordered_scaf
list< CRef< CGC_Scaf_stats > >	CGC_SequenceStats_Base::m_Unordered_scaf
list< CRef< CGC_Scaf_stats > >	CGC_SequenceStats_Base::m_Unplaced_scaf
list< CRef< CGC_Scaf_stats > >	CGC_SequenceStats_Base::m_Aligned_scaf
list< CRef< CGC_Scaf_stats > >	CGC_SequenceStats_Base::m_Unaligned_scaf
Uint4	CGC_TaggedSequences_Base::m_set_State [1]
int	CGC_TaggedSequences_Base::m_State
list< CRef< CGC_Sequence > >	CGC_TaggedSequences_Base::m_Seqs
E_Choice	CGC_TypedSeqId_Base::m_choice
static const char *const	CGC_TypedSeqId_Base::sm_SelectionNames []
NCBI_NS_NCBI::CSerialObject *	CGC_TypedSeqId_Base::m_object

Detailed Description

Typedef Documentation

TAligned_scaf

typedef list< CRef< CGC_Scaf_stats > > CGC_SequenceStats_Base::TAligned_scaf

Definition at line 95 of file GC_SequenceStats_.hpp.

TAll_scaf

typedef list< CRef< CGC_Scaf_stats > > CGC_SequenceStats_Base::TAll_scaf

Definition at line 91 of file GC_SequenceStats_.hpp.

TAnnot [1/2]

typedef list< CRef< CSeq_annot > > CGC_AssemblyDesc_Base::TAnnot

Definition at line 137 of file GC_AssemblyDesc_.hpp.

TAnnot [2/2]

typedef list< CRef< CSeq_annot > > CGC_Sequence_Base::TAnnot

Definition at line 118 of file GC_Sequence_.hpp.

TAssemblies

typedef list< CRef< CGC_Assembly > > CGC_Assemblies_Base::TAssemblies

Definition at line 91 of file GC_Assemblies_.hpp.

TAssembly

typedef CGC_Assembly CGC_GenomicPart_Base::TAssembly

Definition at line 147 of file GC_GenomicPart_.hpp.

TAssembly_set

typedef CGC_AssemblySet CGC_Assembly_Base::TAssembly_set

Definition at line 149 of file GC_Assembly_.hpp.

TChr_names

typedef list< string > CGC_Genome_Base::TChr_names

Definition at line 96 of file GC_Genome_.hpp.

TClass [1/2]

typedef int CGC_AssemblySet_Base::TClass

Definition at line 121 of file GC_AssemblySet_.hpp.

TClass [2/2]

typedef int CGC_AssemblyUnit_Base::TClass

Definition at line 106 of file GC_AssemblyUnit_.hpp.

TCoverage

typedef double CGC_AssemblyDesc_Base::TCoverage

Definition at line 142 of file GC_AssemblyDesc_.hpp.

TDesc [1/2]

typedef CGC_AssemblyDesc CGC_AssemblySet_Base::TDesc

Definition at line 122 of file GC_AssemblySet_.hpp.

TDesc [2/2]

typedef CGC_AssemblyDesc CGC_AssemblyUnit_Base::TDesc

Definition at line 107 of file GC_AssemblyUnit_.hpp.

TDescr [1/3]

typedef CSeq_descr CGC_AssemblyDesc_Base::TDescr

Definition at line 140 of file GC_AssemblyDesc_.hpp.

TDescr [2/3]

typedef CSeq_descr CGC_Genome_Base::TDescr

Definition at line 95 of file GC_Genome_.hpp.

TDescr [3/3]

typedef CSeq_descr CGC_Sequence_Base::TDescr

Definition at line 117 of file GC_Sequence_.hpp.

TDisplay_name

typedef string CGC_AssemblyDesc_Base::TDisplay_name

Definition at line 130 of file GC_AssemblyDesc_.hpp.

TExternal [1/2]

typedef string CGC_External_Seqid_Base::TExternal

Definition at line 89 of file GC_External_Seqid_.hpp.

TExternal [2/2]

typedef CGC_External_Seqid CGC_TypedSeqId_Base::TExternal

Definition at line 151 of file GC_TypedSeqId_.hpp.

TFilesafe_name

typedef string CGC_AssemblyDesc_Base::TFilesafe_name

Definition at line 132 of file GC_AssemblyDesc_.hpp.

TGenbank [1/2]

typedef CDbtag CGC_DbTagAlias_Base::TGenbank

Definition at line 100 of file GC_DbTagAlias_.hpp.

TGenbank [2/2]

typedef CGC_SeqIdAlias CGC_TypedSeqId_Base::TGenbank

Definition at line 148 of file GC_TypedSeqId_.hpp.

TGi

typedef CSeq_id CGC_SeqIdAlias_Base::TGi

Definition at line 102 of file GC_SeqIdAlias_.hpp.

TGpipe

typedef CSeq_id CGC_SeqIdAlias_Base::TGpipe

Definition at line 101 of file GC_SeqIdAlias_.hpp.

TId [1/4]

typedef list< CRef< CDbtag > > CGC_AssemblySet_Base::TId

Definition at line 119 of file GC_AssemblySet_.hpp.

TId [2/4]

typedef list< CRef< CDbtag > > CGC_AssemblyUnit_Base::TId

Definition at line 105 of file GC_AssemblyUnit_.hpp.

TId [3/4]

typedef CSeq_id CGC_External_Seqid_Base::TId

Definition at line 90 of file GC_External_Seqid_.hpp.

TId [4/4]

typedef list< CRef< CDbtag > > CGC_Genome_Base::TId

Definition at line 93 of file GC_Genome_.hpp.

TLocal_name

typedef string CGC_Replicon_Base::TLocal_name

Definition at line 241 of file GC_Replicon_.hpp.

TLong_name

typedef CStringUTF8 CGC_AssemblyDesc_Base::TLong_name

Definition at line 131 of file GC_AssemblyDesc_.hpp.

TmemberIndex [1/15]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CGC_Assemblies_Base::TmemberIndex

Definition at line 99 of file GC_Assemblies_.hpp.

TmemberIndex [2/15]

typedef Tparent::CMemberIndex<E_memberIndex, 19> CGC_AssemblyDesc_Base::TmemberIndex

Definition at line 168 of file GC_AssemblyDesc_.hpp.

TmemberIndex [3/15]

typedef Tparent::CMemberIndex<E_memberIndex, 8> CGC_AssemblySet_Base::TmemberIndex

Definition at line 138 of file GC_AssemblySet_.hpp.

TmemberIndex [4/15]

typedef Tparent::CMemberIndex<E_memberIndex, 9> CGC_AssemblyUnit_Base::TmemberIndex

Definition at line 126 of file GC_AssemblyUnit_.hpp.

TmemberIndex [5/15]

typedef Tparent::CMemberIndex<E_memberIndex, 4> CGC_DbTagAlias_Base::TmemberIndex

Definition at line 110 of file GC_DbTagAlias_.hpp.

TmemberIndex [6/15]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CGC_External_Seqid_Base::TmemberIndex

Definition at line 98 of file GC_External_Seqid_.hpp.

TmemberIndex [7/15]

typedef Tparent::CMemberIndex<E_memberIndex, 6> CGC_Genome_Base::TmemberIndex

Definition at line 108 of file GC_Genome_.hpp.

TmemberIndex [8/15]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CGC_Project_Base::TmemberIndex

Definition at line 94 of file GC_Project_.hpp.

TmemberIndex [9/15]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CGC_Query_Base::TmemberIndex

Definition at line 98 of file GC_Query_.hpp.

TmemberIndex [10/15]

typedef Tparent::CMemberIndex<E_memberIndex, 4> CGC_Replicon_Base::TmemberIndex

Definition at line 251 of file GC_Replicon_.hpp.

TmemberIndex [11/15]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CGC_Scaf_stats_Base::TmemberIndex

Definition at line 171 of file GC_Scaf_stats_.hpp.

TmemberIndex [12/15]

typedef Tparent::CMemberIndex<E_memberIndex, 5> CGC_SeqIdAlias_Base::TmemberIndex

Definition at line 113 of file GC_SeqIdAlias_.hpp.

TmemberIndex [13/15]

typedef Tparent::CMemberIndex<E_memberIndex, 10> CGC_Sequence_Base::TmemberIndex

Definition at line 138 of file GC_Sequence_.hpp.

TmemberIndex [14/15]

typedef Tparent::CMemberIndex<E_memberIndex, 7> CGC_SequenceStats_Base::TmemberIndex

Definition at line 108 of file GC_SequenceStats_.hpp.

TmemberIndex [15/15]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CGC_TaggedSequences_Base::TmemberIndex

Definition at line 111 of file GC_TaggedSequences_.hpp.

TMol

typedef CGC_Replicon CGC_GenomicPart_Base::TMol

Definition at line 148 of file GC_GenomicPart_.hpp.

TMols

typedef list< CRef< CGC_Replicon > > CGC_AssemblyUnit_Base::TMols

Definition at line 108 of file GC_AssemblyUnit_.hpp.

TMore_assemblies

typedef list< CRef< CGC_Assembly > > CGC_AssemblySet_Base::TMore_assemblies

Definition at line 124 of file GC_AssemblySet_.hpp.

TName [1/2]

typedef string CGC_AssemblyDesc_Base::TName

Definition at line 128 of file GC_AssemblyDesc_.hpp.

TName [2/2]

typedef string CGC_Replicon_Base::TName

Definition at line 240 of file GC_Replicon_.hpp.

TOrdered_scaf

typedef list< CRef< CGC_Scaf_stats > > CGC_SequenceStats_Base::TOrdered_scaf

Definition at line 92 of file GC_SequenceStats_.hpp.

TOther_sequences

typedef list< CRef< CGC_TaggedSequences > > CGC_AssemblyUnit_Base::TOther_sequences

Definition at line 109 of file GC_AssemblyUnit_.hpp.

TParam

typedef string CGC_Query_Base::TParam

Definition at line 89 of file GC_Query_.hpp.

Tparent [1/31]

typedef CGC_Assemblies_Base CGC_Assemblies::Tparent

private

Definition at line 67 of file GC_Assemblies.hpp.

Tparent [2/31]

typedef CSerialObject CGC_Assemblies_Base::Tparent

private

Definition at line 79 of file GC_Assemblies_.hpp.

Tparent [3/31]

typedef CSerialObject CGC_Assembly_Base::Tparent

private

Definition at line 78 of file GC_Assembly_.hpp.

Tparent [4/31]

typedef CGC_AssemblyDesc_Base CGC_AssemblyDesc::Tparent

private

Definition at line 67 of file GC_AssemblyDesc.hpp.

Tparent [5/31]

typedef CSerialObject CGC_AssemblyDesc_Base::Tparent

private

Definition at line 83 of file GC_AssemblyDesc_.hpp.

Tparent [6/31]

typedef CSerialObject CGC_AssemblySet_Base::Tparent

private

Definition at line 81 of file GC_AssemblySet_.hpp.

Tparent [7/31]

typedef CSerialObject CGC_AssemblyUnit_Base::Tparent

private

Definition at line 83 of file GC_AssemblyUnit_.hpp.

Tparent [8/31]

typedef CGC_DbTagAlias_Base CGC_DbTagAlias::Tparent

private

Definition at line 67 of file GC_DbTagAlias.hpp.

Tparent [9/31]

typedef CSerialObject CGC_DbTagAlias_Base::Tparent

private

Definition at line 76 of file GC_DbTagAlias_.hpp.

Tparent [10/31]

typedef CGC_External_Seqid_Base CGC_External_Seqid::Tparent

private

Definition at line 67 of file GC_External_Seqid.hpp.

Tparent [11/31]

typedef CSerialObject CGC_External_Seqid_Base::Tparent

private

Definition at line 78 of file GC_External_Seqid_.hpp.

Tparent [12/31]

typedef CGC_Genome_Base CGC_Genome::Tparent

private

Definition at line 67 of file GC_Genome.hpp.

Tparent [13/31]

typedef CSerialObject CGC_Genome_Base::Tparent

private

Definition at line 82 of file GC_Genome_.hpp.

Tparent [14/31]

typedef CGC_GenomicPart_Base CGC_GenomicPart::Tparent

private

Definition at line 67 of file GC_GenomicPart.hpp.

Tparent [15/31]

typedef CSerialObject CGC_GenomicPart_Base::Tparent

private

Definition at line 76 of file GC_GenomicPart_.hpp.

Tparent [16/31]

typedef CGC_Project_Base CGC_Project::Tparent

private

Definition at line 67 of file GC_Project.hpp.

Tparent [17/31]

typedef CSerialObject CGC_Project_Base::Tparent

private

Definition at line 74 of file GC_Project_.hpp.

Tparent [18/31]

typedef CGC_Query_Base CGC_Query::Tparent

private

Definition at line 67 of file GC_Query.hpp.

Tparent [19/31]

typedef CSerialObject CGC_Query_Base::Tparent

private

Definition at line 78 of file GC_Query_.hpp.

Tparent [20/31]

typedef CSerialObject CGC_Replicon_Base::Tparent

private

Definition at line 79 of file GC_Replicon_.hpp.

Tparent [21/31]

typedef CSerialObject CGC_Replicon_Base::C_Sequence::Tparent

private

Definition at line 99 of file GC_Replicon_.hpp.

Tparent [22/31]

typedef CGC_Scaf_stats_Base CGC_Scaf_stats::Tparent

private

Definition at line 67 of file GC_Scaf_stats.hpp.

Tparent [23/31]

typedef CSerialObject CGC_Scaf_stats_Base::Tparent

private

Definition at line 70 of file GC_Scaf_stats_.hpp.

Tparent [24/31]

typedef CSerialObject CGC_SeqIdAlias_Base::Tparent

private

Definition at line 80 of file GC_SeqIdAlias_.hpp.

Tparent [25/31]

typedef CSerialObject CGC_Sequence_Base::Tparent

private

Definition at line 95 of file GC_Sequence_.hpp.

Tparent [26/31]

typedef CGC_SequenceStats_Base CGC_SequenceStats::Tparent

private

Definition at line 67 of file GC_SequenceStats.hpp.

Tparent [27/31]

typedef CSerialObject CGC_SequenceStats_Base::Tparent

private

Definition at line 80 of file GC_SequenceStats_.hpp.

Tparent [28/31]

typedef CGC_TaggedSequences_Base CGC_TaggedSequences::Tparent

private

Definition at line 67 of file GC_TaggedSequences.hpp.

Tparent [29/31]

typedef CSerialObject CGC_TaggedSequences_Base::Tparent

private

Definition at line 79 of file GC_TaggedSequences_.hpp.

Tparent [30/31]

typedef CGC_TypedSeqId_Base CGC_TypedSeqId::Tparent

private

Definition at line 67 of file GC_TypedSeqId.hpp.

Tparent [31/31]

typedef CSerialObject CGC_TypedSeqId_Base::Tparent

private

Definition at line 76 of file GC_TypedSeqId_.hpp.

TPartial

typedef bool CGC_AssemblyDesc_Base::TPartial

Definition at line 141 of file GC_AssemblyDesc_.hpp.

TParts

typedef list< CRef< CGC_GenomicPart > > CGC_Genome_Base::TParts

Definition at line 97 of file GC_Genome_.hpp.

TPatch_type

typedef int CGC_Sequence_Base::TPatch_type

Definition at line 122 of file GC_Sequence_.hpp.

TPrimary_assembly

typedef CGC_Assembly CGC_AssemblySet_Base::TPrimary_assembly

Definition at line 123 of file GC_AssemblySet_.hpp.

TPrivate

typedef CSeq_id CGC_TypedSeqId_Base::TPrivate

Definition at line 150 of file GC_TypedSeqId_.hpp.

TProject_id

typedef int CGC_Project_Base::TProject_id

Definition at line 86 of file GC_Project_.hpp.

TProject_role

typedef string CGC_Project_Base::TProject_role

Definition at line 85 of file GC_Project_.hpp.

TProjects [1/2]

typedef list< CRef< CGC_Project > > CGC_AssemblyDesc_Base::TProjects

Definition at line 127 of file GC_AssemblyDesc_.hpp.

TProjects [2/2]

typedef list< CRef< CGC_Project > > CGC_Genome_Base::TProjects

Definition at line 94 of file GC_Genome_.hpp.

TPublic

typedef CSeq_id CGC_SeqIdAlias_Base::TPublic

Definition at line 100 of file GC_SeqIdAlias_.hpp.

TQuery

typedef list< CRef< CGC_Query > > CGC_Assemblies_Base::TQuery

Definition at line 90 of file GC_Assemblies_.hpp.

TRefseq [1/2]

typedef CDbtag CGC_DbTagAlias_Base::TRefseq

Definition at line 99 of file GC_DbTagAlias_.hpp.

TRefseq [2/2]

typedef CGC_SeqIdAlias CGC_TypedSeqId_Base::TRefseq

Definition at line 149 of file GC_TypedSeqId_.hpp.

TRelease_level

typedef int CGC_AssemblyDesc_Base::TRelease_level

Definition at line 143 of file GC_AssemblyDesc_.hpp.

TRelease_status

typedef int CGC_AssemblyDesc_Base::TRelease_status

Definition at line 136 of file GC_AssemblyDesc_.hpp.

TRelease_type

typedef int CGC_AssemblyDesc_Base::TRelease_type

Definition at line 135 of file GC_AssemblyDesc_.hpp.

TRoles

typedef list< int > CGC_Sequence_Base::TRoles

Definition at line 123 of file GC_Sequence_.hpp.

TSeq_id

typedef CSeq_id CGC_Sequence_Base::TSeq_id

Definition at line 115 of file GC_Sequence_.hpp.

TSeq_id_synonyms

typedef list< CRef< CGC_TypedSeqId > > CGC_Sequence_Base::TSeq_id_synonyms

Definition at line 116 of file GC_Sequence_.hpp.

TSeqs [1/2]

typedef CGC_Sequence CGC_GenomicPart_Base::TSeqs

Definition at line 149 of file GC_GenomicPart_.hpp.

TSeqs [2/2]

typedef list< CRef< CGC_Sequence > > CGC_TaggedSequences_Base::TSeqs

Definition at line 103 of file GC_TaggedSequences_.hpp.

TSequence

typedef C_Sequence CGC_Replicon_Base::TSequence

Definition at line 242 of file GC_Replicon_.hpp.

TSequences

typedef list< CRef< CGC_TaggedSequences > > CGC_Sequence_Base::TSequences

Definition at line 119 of file GC_Sequence_.hpp.

TSet

typedef list< CRef< CGC_Sequence > > CGC_Replicon_Base::C_Sequence::TSet

Definition at line 170 of file GC_Replicon_.hpp.

TSet_type

typedef int CGC_AssemblySet_Base::TSet_type

Definition at line 120 of file GC_AssemblySet_.hpp.

TSimilarity [1/2]

typedef int CGC_DbTagAlias_Base::TSimilarity

Definition at line 101 of file GC_DbTagAlias_.hpp.

TSimilarity [2/2]

typedef int CGC_SeqIdAlias_Base::TSimilarity

Definition at line 103 of file GC_SeqIdAlias_.hpp.

TSingle

typedef CGC_Sequence CGC_Replicon_Base::C_Sequence::TSingle

Definition at line 169 of file GC_Replicon_.hpp.

TState

typedef int CGC_TaggedSequences_Base::TState

Definition at line 102 of file GC_TaggedSequences_.hpp.

TStats [1/3]

typedef CGC_SequenceStats CGC_AssemblySet_Base::TStats

Definition at line 125 of file GC_AssemblySet_.hpp.

TStats [2/3]

typedef CGC_SequenceStats CGC_AssemblyUnit_Base::TStats

Definition at line 110 of file GC_AssemblyUnit_.hpp.

TStats [3/3]

typedef CGC_SequenceStats CGC_Sequence_Base::TStats

Definition at line 121 of file GC_Sequence_.hpp.

TStats_category

typedef int CGC_Scaf_stats_Base::TStats_category

Definition at line 162 of file GC_Scaf_stats_.hpp.

TStructure

typedef CDelta_ext CGC_Sequence_Base::TStructure

Definition at line 120 of file GC_Sequence_.hpp.

TSubmitter_date

typedef CDate CGC_AssemblyDesc_Base::TSubmitter_date

Definition at line 139 of file GC_AssemblyDesc_.hpp.

TSubmitter_name

typedef string CGC_AssemblyDesc_Base::TSubmitter_name

Definition at line 129 of file GC_AssemblyDesc_.hpp.

TSubmitter_organization

typedef CStringUTF8 CGC_AssemblyDesc_Base::TSubmitter_organization

Definition at line 144 of file GC_AssemblyDesc_.hpp.

TSynonyms

typedef list< CRef< CGC_DbTagAlias > > CGC_AssemblyDesc_Base::TSynonyms

Definition at line 138 of file GC_AssemblyDesc_.hpp.

TUnaligned_scaf

typedef list< CRef< CGC_Scaf_stats > > CGC_SequenceStats_Base::TUnaligned_scaf

Definition at line 96 of file GC_SequenceStats_.hpp.

TUnit

typedef CGC_AssemblyUnit CGC_Assembly_Base::TUnit

Definition at line 148 of file GC_Assembly_.hpp.

TUnordered_scaf

typedef list< CRef< CGC_Scaf_stats > > CGC_SequenceStats_Base::TUnordered_scaf

Definition at line 93 of file GC_SequenceStats_.hpp.

TUnplaced_scaf

typedef list< CRef< CGC_Scaf_stats > > CGC_SequenceStats_Base::TUnplaced_scaf

Definition at line 94 of file GC_SequenceStats_.hpp.

TUnplaced_stats

typedef list< CRef< CGC_Scaf_stats > > CGC_AssemblyUnit_Base::TUnplaced_stats

Definition at line 111 of file GC_AssemblyUnit_.hpp.

TUnplaced_unlocalized_stats

typedef list< CRef< CGC_Scaf_stats > > CGC_AssemblyUnit_Base::TUnplaced_unlocalized_stats

Definition at line 112 of file GC_AssemblyUnit_.hpp.

TValue [1/2]

typedef string CGC_Query_Base::TValue

Definition at line 90 of file GC_Query_.hpp.

TValue [2/2]

typedef Uint8 CGC_Scaf_stats_Base::TValue

Definition at line 163 of file GC_Scaf_stats_.hpp.

TWgs_acc_number

typedef int CGC_AssemblyDesc_Base::TWgs_acc_number

Definition at line 134 of file GC_AssemblyDesc_.hpp.

TWgs_acc_prefix

typedef string CGC_AssemblyDesc_Base::TWgs_acc_prefix

Definition at line 133 of file GC_AssemblyDesc_.hpp.

Enumeration Type Documentation

E_Choice [1/4]

enum CGC_Assembly_Base::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Unit
e_Assembly_set

Definition at line 90 of file GC_Assembly_.hpp.

E_Choice [2/4]

enum CGC_GenomicPart_Base::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Assembly
e_Mol
e_Seqs

Definition at line 88 of file GC_GenomicPart_.hpp.

E_Choice [3/4]

enum CGC_Replicon_Base::C_Sequence::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Single
e_Set

Definition at line 111 of file GC_Replicon_.hpp.

E_Choice [4/4]

enum CGC_TypedSeqId_Base::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Genbank
e_Refseq
e_Private
e_External

Definition at line 88 of file GC_TypedSeqId_.hpp.

E_ChoiceStopper [1/4]

enum CGC_Assembly_Base::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Assembly_set+1

Definition at line 96 of file GC_Assembly_.hpp.

E_ChoiceStopper [2/4]

enum CGC_GenomicPart_Base::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Seqs+1

Definition at line 95 of file GC_GenomicPart_.hpp.

E_ChoiceStopper [3/4]

enum CGC_Replicon_Base::C_Sequence::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Set+1

Definition at line 117 of file GC_Replicon_.hpp.

E_ChoiceStopper [4/4]

enum CGC_TypedSeqId_Base::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_External+1

Definition at line 96 of file GC_TypedSeqId_.hpp.

E_memberIndex [1/15]

enum CGC_Assemblies_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_query
e_assemblies

Definition at line 94 of file GC_Assemblies_.hpp.

E_memberIndex [2/15]

enum CGC_AssemblyDesc_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_projects
e_name
e_submitter_name
e_display_name
e_long_name
e_filesafe_name
e_wgs_acc_prefix
e_wgs_acc_number
e_release_type
e_release_status
e_annot
e_synonyms
e_submitter_date
e_descr
e_partial
e_coverage
e_release_level
e_submitter_organization

Definition at line 147 of file GC_AssemblyDesc_.hpp.

E_memberIndex [3/15]

enum CGC_AssemblySet_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_id
e_set_type
e_class
e_desc
e_primary_assembly
e_more_assemblies
e_stats

Definition at line 128 of file GC_AssemblySet_.hpp.

E_memberIndex [4/15]

enum CGC_AssemblyUnit_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_id
e_class
e_desc
e_mols
e_other_sequences
e_stats
e_unplaced_stats
e_unplaced_unlocalized_stats

Definition at line 115 of file GC_AssemblyUnit_.hpp.

E_memberIndex [5/15]

enum CGC_DbTagAlias_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_refseq
e_genbank
e_similarity

Definition at line 104 of file GC_DbTagAlias_.hpp.

E_memberIndex [6/15]

enum CGC_External_Seqid_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_external
e_id

Definition at line 93 of file GC_External_Seqid_.hpp.

E_memberIndex [7/15]

enum CGC_Genome_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_id
e_projects
e_descr
e_chr_names
e_parts

Definition at line 100 of file GC_Genome_.hpp.

E_memberIndex [8/15]

enum CGC_Project_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_project_role
e_project_id

Definition at line 89 of file GC_Project_.hpp.

E_memberIndex [9/15]

enum CGC_Query_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_param
e_value

Definition at line 93 of file GC_Query_.hpp.

E_memberIndex [10/15]

enum CGC_Replicon_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_name
e_local_name
e_sequence

Definition at line 245 of file GC_Replicon_.hpp.

E_memberIndex [11/15]

enum CGC_Scaf_stats_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_stats_category
e_value

Definition at line 166 of file GC_Scaf_stats_.hpp.

E_memberIndex [12/15]

enum CGC_SeqIdAlias_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_public
e_gpipe
e_gi
e_similarity

Definition at line 106 of file GC_SeqIdAlias_.hpp.

E_memberIndex [13/15]

enum CGC_Sequence_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_seq_id
e_seq_id_synonyms
e_descr
e_annot
e_sequences
e_structure
e_stats
e_patch_type
e_roles

Definition at line 126 of file GC_Sequence_.hpp.

E_memberIndex [14/15]

enum CGC_SequenceStats_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_all_scaf
e_ordered_scaf
e_unordered_scaf
e_unplaced_scaf
e_aligned_scaf
e_unaligned_scaf

Definition at line 99 of file GC_SequenceStats_.hpp.

E_memberIndex [15/15]

enum CGC_TaggedSequences_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_state
e_seqs

Definition at line 106 of file GC_TaggedSequences_.hpp.

EClass [1/2]

enum CGC_AssemblySet_Base::EClass

'class' defines the semantics of how to interpret this item

Enumerator
eClass_full_assembly	general type of full-assembly (not expected to be used)
eClass_haploid	this assembly represents a single haploid assembly in its entirety
eClass_haploid_with_alt_loci	this assembly has exactly one unit and at least one alt-loci
eClass_diploid	assembly represents a diploid assembly; we expect at least two haploid-unit assemblies contained herein
eClass_unresolved_diploid	unresolved-diploid: single unit which includes the diploid sequences
eClass_alternate_haplotype	second part of diploid; linked to another haploid full-assembly this one is alt-loci or second full-haploid
eClass_alternate_pseudohaplotype
eClass_annotation_target_set	assembly is a collection for annotation
eClass_analysis_set	analysis set used for sequencing by alignments
eClass_other	stopper

Definition at line 102 of file GC_AssemblySet_.hpp.

EClass [2/2]

enum CGC_AssemblyUnit_Base::EClass

'class' defines the semantics of how to interpret this item

Enumerator
eClass_haploid_unit	units for haploid/diploid assemblies
eClass_alt_loci	this unit represents one or more alternate loci for a haploid assembly
eClass_assembly_patch	assembly-patch
eClass_other	stopper

Definition at line 94 of file GC_AssemblyUnit_.hpp.

EGC_SequenceRole

enum EGC_SequenceRole

sequence-role: what role(s) does this sequence have in the assembly a sequence may have more than one role.

Access to EGC_SequenceRole's attributes (values, names) as defined in spec.

e.g. a complete-sequence is all 4 roles pseudo-scaffold - this is for UCSC chr1_random etc submitter-pseudo-scaffold - this is for FlyBase pseudo scaffolds.

Enumerator
eGC_SequenceRole_chromosome
eGC_SequenceRole_scaffold
eGC_SequenceRole_component
eGC_SequenceRole_top_level
eGC_SequenceRole_pseudo_scaffold
eGC_SequenceRole_submitter_pseudo_scaffold

Definition at line 67 of file GC_SequenceRole_.hpp.

EPatch_type

enum CGC_Sequence_Base::EPatch_type

Enumerator
ePatch_type_novel
ePatch_type_fix
ePatch_type_other	stopper

Definition at line 105 of file GC_Sequence_.hpp.

ERelease_level

enum CGC_AssemblyDesc_Base::ERelease_level

release level: Most of releases are major

Enumerator
eRelease_level_major
eRelease_level_patch
eRelease_level_minor
eRelease_level_other	stopper

Definition at line 116 of file GC_AssemblyDesc_.hpp.

ERelease_status

enum CGC_AssemblyDesc_Base::ERelease_status

release status (numeric values have gaps for possible additional states

Enumerator
eRelease_status_new
eRelease_status_gpipe
eRelease_status_public
eRelease_status_suppressed
eRelease_status_hup
eRelease_status_withdrawn

Definition at line 103 of file GC_AssemblyDesc_.hpp.

ERelease_type

enum CGC_AssemblyDesc_Base::ERelease_type

release type: RefSeq / GenBank.

Enumerator
eRelease_type_genbank
eRelease_type_refseq

Definition at line 94 of file GC_AssemblyDesc_.hpp.

ESet_type

enum CGC_AssemblySet_Base::ESet_type

set type: Assembly-Sets can be of 2 categories

Enumerator
eSet_type_full_assembly	full-assembly: set of asm-units
eSet_type_assembly_set	set of full-assemblies stopper
eSet_type_other

Definition at line 92 of file GC_AssemblySet_.hpp.

ESimilarity [1/2]

enum CGC_DbTagAlias_Base::ESimilarity

Similarity: relationship between 2 assemblies represented by DbTags Can be expanded to multiple level of identicality can use bitmap to flag ambiguity between different identicality levels.

Enumerator
eSimilarity_unknown
eSimilarity_identical
eSimilarity_different

Definition at line 89 of file GC_DbTagAlias_.hpp.

ESimilarity [2/2]

enum CGC_SeqIdAlias_Base::ESimilarity

Enumerator
eSimilarity_unknown
eSimilarity_identical
eSimilarity_different

Definition at line 90 of file GC_SeqIdAlias_.hpp.

EState

enum CGC_TaggedSequences_Base::EState

Enumerator
eState_not_set	error
eState_placed	exist only within a replicon. placed sequences on higher sequence
eState_unlocalized	exist only within a replicon. "random" on a given chromosome
eState_unplaced	exist only on primary/diploid assembly-unit. unknown chromosome
eState_aligned	exist only on alt-loci/patch units. List all aligned (eg cross-placed) sequences. (unaligned are listed as unlocalized).
eState_bits	exist only on primary/diploid unit. if need to report low-level contigs

Definition at line 89 of file GC_TaggedSequences_.hpp.

EStats_category

enum CGC_Scaf_stats_Base::EStats_category

NOTE: These values equal to the stats_cd values in CodeStatistics table in GenomeColl.

Enumerator
eStats_category_replicon_count
eStats_category_scaffold_count
eStats_category_component_count	How many components.
eStats_category_component_span_count	How many placements of components.
eStats_category_total_length
eStats_category_ungapped_length
eStats_category_min_gapped_scaf_length
eStats_category_max_gapped_scaf_length
eStats_category_min_ungapped_scaf_length
eStats_category_max_ungapped_scaf_length
eStats_category_active_finishing_bases
eStats_category_draft_bases
eStats_category_finished_bases
eStats_category_whole_genome_finishing_bases
eStats_category_other_sequences
eStats_category_pre_draft
eStats_category_wgs_bases
eStats_category_bases_in_spanned_gaps
eStats_category_n50
eStats_category_spanned_gaps
eStats_category_unspanned_gaps
eStats_category_bases_in_unspanned_gaps
eStats_category_count_contig	contig count
eStats_category_contig_n50	contig N50
eStats_category_contig_L50	contig L50
eStats_category_contig_n75	contig N75
eStats_category_contig_n90	contig N90
eStats_category_scaf_L50	scaffold L50
eStats_category_scaf_n75	scaffold N75
eStats_category_scaf_n90	scaffold N90
eStats_category_gc_count	base counts for G,C
eStats_category_atgc_count	base count for A,T,G,C
eStats_category_gc_perc	gc-count / atgc-count as percentage.
eStats_category_is_there_unplaced_scaf	1 means there is unplaced scaffold. 0 means none
eStats_category_count_singleton_unordered_scaffold
eStats_category_count_chr_made_of_singleton_ordered_scaffold
eStats_category_count_chr_with_single_component	GCOL-675 - assembly release review stats. Meaningful only at assembly level. Do any of the chromosomes have a single component each? if yes, do all chromosomes have single component each? INTEGER OPTIONAL, number of unplaced/unlocalized singleton scaffolds in minus orientation.
eStats_category_count_singleton_in_minus_orientation	INTEGER OPTIONAL, chr-terminal-gap-types SET OF GC-ChrGapTypes OPTIONAL, are any gaps flagged as 'unknown' and how many? 0 means none.
eStats_category_count_unknown_gaps	INTEGER OPTIONAL, 1.2c Scaffold source names: count implicit/explicit.
eStats_category_count_implicit_scaf_src_name	INTEGER OPTIONAL,.
eStats_category_count_explicit_scaf_src_name	INTEGER OPTIONAL.
eStats_category_all_chr_has_single_component	if 1 yes, 0 no. BOOLEAN OPTIONAL, Do any scaffolds have terminal gaps? How many?
eStats_category_count_scaf_with_terminal_gaps	INTEGER OPTIONAL, Do any chromosome have terminal gaps? what is the gap type for each?
eStats_category_count_chr_with_terminal_gaps	INTEGER OPTIONAL, Number of component GIs (uniq components). Is the count different from the count in the latest GenBank/Refseq release for the same assembly, by how many?
eStats_category_count_uniq_components	INTEGER OPTIONAL ,.
eStats_category_count_uniq_component_diff_from_last_release	INTEGER OPTIONAL,.
eStats_category_count_chromosome_types	INTEGER OPTIONAL,.
eStats_category_count_chromosome_terminal_gap_types	# of chromosome terminal gap types
eStats_category_count_dropped_components	dropped component due to foreign screen
eStats_category_count_non_chromosome_replicon	number of non-Chromosome replicons
eStats_category_count_assembly_units	# of assembly-units
eStats_category_count_alt_loci_units	# of alt-loci units
eStats_category_count_fixed_patches	# of fixed patches
eStats_category_count_novel_patches	# of novel patches
eStats_category_count_regions	# of regions
eStats_category_count_patches	# of patches
eStats_category_count_par_regions	# of PAR regions
eStats_category_count_genomic_regions	# of genomic regions
eStats_category_count_chromosome_replicons	# of chromosomal replicons
eStats_category_assembly_status	Assembly status 1 - Contig only;2 - Unplaced scaffolds only; 3 - Some chromosomes assembled; 4 - all chromosomes assembled; 5 - complete sequence genome; 6-unlocalized and unplaced scaffolds.
eStats_category_net_count_scaffold	number of scaffolds that are not also chromosomes (22 - 75)
eStats_category_net_count_component	number of components that are not also chromosomes or scaffolds (30 - 75 -73)
eStats_category_count_regions_contain_alt_loci	number of regions containing alt-loci
eStats_category_count_regions_contain_fix_patch	number of regions containing fix patch
eStats_category_count_regions_contain_novel_patch	number of regions containing novel patch
eStats_category_count_fix_patch_with_alignment	number of fix patch with alignment to primary assembly
eStats_category_count_novel_patch_with_alignment	number of novel patch with alignment to primary assembly
eStats_category_count_alt_scaf_with_alignment	number of alt scaffolds with alignment to primary assembly
eStats_category_count_alt_loci_scaf	number of alt-loci scaffolds.
eStats_category_count_real_scaffolds	number of scaffolds with gb_is_skipped = 0.
eStats_category_top_level_count	Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds.
eStats_category_total_gap_length	Total length of gaps.
eStats_category_count_replicons_without_ordered_scaf	count of replicons without ordered scaffold
eStats_category_other	catch all

Definition at line 81 of file GC_Scaf_stats_.hpp.

Function Documentation

C_Sequence() [1/2]

CGC_Replicon_Base::C_Sequence::C_Sequence ( const C_Sequence &  )

private

C_Sequence() [2/2]

END_CHOICE_INFO CGC_Replicon_Base::C_Sequence::C_Sequence

(

void

)

Definition at line 140 of file GC_Replicon_.cpp.

CanGetAligned_scaf()

bool CGC_SequenceStats_Base::CanGetAligned_scaf ( void  ) const

inline

Check if it is safe to call GetAligned_scaf method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 438 of file GC_SequenceStats_.hpp.

CanGetAll_scaf()

bool CGC_SequenceStats_Base::CanGetAll_scaf ( void  ) const

inline

Check if it is safe to call GetAll_scaf method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 338 of file GC_SequenceStats_.hpp.

Referenced by CGC_Sequence::x_GetLength().

CanGetAnnot() [1/2]

bool CGC_AssemblyDesc_Base::CanGetAnnot ( void  ) const

inline

Check if it is safe to call GetAnnot method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1352 of file GC_AssemblyDesc_.hpp.

CanGetAnnot() [2/2]

bool CGC_Sequence_Base::CanGetAnnot ( void  ) const

inline

Check if it is safe to call GetAnnot method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 598 of file GC_Sequence_.hpp.

CanGetAssemblies()

bool CGC_Assemblies_Base::CanGetAssemblies ( void  ) const

inline

Check if it is safe to call GetAssemblies method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 222 of file GC_Assemblies_.hpp.

CanGetChr_names()

bool CGC_Genome_Base::CanGetChr_names ( void  ) const

inline

Check if it is safe to call GetChr_names method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 390 of file GC_Genome_.hpp.

CanGetClass() [1/2]

bool CGC_AssemblySet_Base::CanGetClass ( void  ) const

inline

Check if it is safe to call GetClass method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 511 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::IsSetClass().

Referenced by CGC_AssemblySet_Base::GetClass().

CanGetClass() [2/2]

bool CGC_AssemblyUnit_Base::CanGetClass ( void  ) const

inline

Check if it is safe to call GetClass method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 477 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::IsSetClass().

Referenced by CGC_AssemblyUnit_Base::GetClass().

CanGetCoverage()

bool CGC_AssemblyDesc_Base::CanGetCoverage ( void  ) const

inline

Check if it is safe to call GetCoverage method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1491 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetCoverage().

Referenced by CGC_AssemblyDesc_Base::GetCoverage().

CanGetDesc() [1/2]

bool CGC_AssemblySet_Base::CanGetDesc ( void  ) const

inline

Check if it is safe to call GetDesc method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 558 of file GC_AssemblySet_.hpp.

CanGetDesc() [2/2]

bool CGC_AssemblyUnit_Base::CanGetDesc ( void  ) const

inline

Check if it is safe to call GetDesc method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 524 of file GC_AssemblyUnit_.hpp.

CanGetDescr() [1/3]

bool CGC_AssemblyDesc_Base::CanGetDescr ( void  ) const

inline

Check if it is safe to call GetDescr method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1423 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetDescr().

Referenced by CGC_AssemblyDesc_Base::GetDescr(), and RemoveVersions().

CanGetDescr() [2/3]

bool CGC_Genome_Base::CanGetDescr ( void  ) const

inline

Check if it is safe to call GetDescr method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 369 of file GC_Genome_.hpp.

References CGC_Genome_Base::IsSetDescr().

Referenced by CGC_Genome_Base::GetDescr().

CanGetDescr() [3/3]

bool CGC_Sequence_Base::CanGetDescr ( void  ) const

inline

Check if it is safe to call GetDescr method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 577 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::IsSetDescr().

Referenced by CGC_Sequence_Base::GetDescr().

CanGetDisplay_name()

bool CGC_AssemblyDesc_Base::CanGetDisplay_name ( void  ) const

inline

Check if it is safe to call GetDisplay_name method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1023 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetDisplay_name().

Referenced by CGC_AssemblyDesc_Base::GetDisplay_name().

CanGetExternal()

bool CGC_External_Seqid_Base::CanGetExternal ( void  ) const

inline

Check if it is safe to call GetExternal method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 209 of file GC_External_Seqid_.hpp.

References CGC_External_Seqid_Base::IsSetExternal().

Referenced by CGC_External_Seqid_Base::GetExternal().

CanGetFilesafe_name()

bool CGC_AssemblyDesc_Base::CanGetFilesafe_name ( void  ) const

inline

Check if it is safe to call GetFilesafe_name method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1117 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetFilesafe_name().

Referenced by CGC_AssemblyDesc_Base::GetFilesafe_name().

CanGetGenbank()

bool CGC_DbTagAlias_Base::CanGetGenbank ( void  ) const

inline

Check if it is safe to call GetGenbank method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 281 of file GC_DbTagAlias_.hpp.

References CGC_DbTagAlias_Base::IsSetGenbank().

Referenced by CGC_DbTagAlias_Base::GetGenbank().

CanGetGi()

bool CGC_SeqIdAlias_Base::CanGetGi ( void  ) const

inline

Check if it is safe to call GetGi method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 357 of file GC_SeqIdAlias_.hpp.

References CGC_SeqIdAlias_Base::IsSetGi().

Referenced by CGC_SeqIdAlias_Base::GetGi().

CanGetGpipe()

bool CGC_SeqIdAlias_Base::CanGetGpipe ( void  ) const

inline

Check if it is safe to call GetGpipe method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 336 of file GC_SeqIdAlias_.hpp.

References CGC_SeqIdAlias_Base::IsSetGpipe().

Referenced by CGC_SeqIdAlias_Base::GetGpipe().

CanGetId() [1/4]

bool CGC_AssemblySet_Base::CanGetId ( void  ) const

inline

Check if it is safe to call GetId method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 439 of file GC_AssemblySet_.hpp.

CanGetId() [2/4]

bool CGC_AssemblyUnit_Base::CanGetId ( void  ) const

inline

Check if it is safe to call GetId method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 452 of file GC_AssemblyUnit_.hpp.

CanGetId() [3/4]

bool CGC_External_Seqid_Base::CanGetId ( void  ) const

inline

Check if it is safe to call GetId method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 256 of file GC_External_Seqid_.hpp.

CanGetId() [4/4]

bool CGC_Genome_Base::CanGetId ( void  ) const

inline

Check if it is safe to call GetId method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 319 of file GC_Genome_.hpp.

CanGetLocal_name()

bool CGC_Replicon_Base::CanGetLocal_name ( void  ) const

inline

Check if it is safe to call GetLocal_name method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 506 of file GC_Replicon_.hpp.

References CGC_Replicon_Base::IsSetLocal_name().

Referenced by CGC_Replicon_Base::GetLocal_name().

CanGetLong_name()

bool CGC_AssemblyDesc_Base::CanGetLong_name ( void  ) const

inline

Check if it is safe to call GetLong_name method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1070 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetLong_name().

Referenced by CGC_AssemblyDesc_Base::GetLong_name().

CanGetMols()

bool CGC_AssemblyUnit_Base::CanGetMols ( void  ) const

inline

Check if it is safe to call GetMols method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 554 of file GC_AssemblyUnit_.hpp.

Referenced by CGencollIdMapper::x_FindParentSequence().

CanGetMore_assemblies()

bool CGC_AssemblySet_Base::CanGetMore_assemblies ( void  ) const

inline

Check if it is safe to call GetMore_assemblies method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 618 of file GC_AssemblySet_.hpp.

Referenced by CGencollIdMapper::x_FindParentSequence().

CanGetName() [1/2]

bool CGC_AssemblyDesc_Base::CanGetName ( void  ) const

inline

Check if it is safe to call GetName method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 929 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetName().

Referenced by CGC_AssemblyDesc_Base::GetName().

CanGetName() [2/2]

bool CGC_Replicon_Base::CanGetName ( void  ) const

inline

Check if it is safe to call GetName method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 459 of file GC_Replicon_.hpp.

References CGC_Replicon_Base::IsSetName().

Referenced by CGC_Replicon_Base::GetName().

CanGetOrdered_scaf()

bool CGC_SequenceStats_Base::CanGetOrdered_scaf ( void  ) const

inline

Check if it is safe to call GetOrdered_scaf method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 363 of file GC_SequenceStats_.hpp.

CanGetOther_sequences()

bool CGC_AssemblyUnit_Base::CanGetOther_sequences ( void  ) const

inline

Check if it is safe to call GetOther_sequences method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 579 of file GC_AssemblyUnit_.hpp.

CanGetParam()

bool CGC_Query_Base::CanGetParam ( void  ) const

inline

Check if it is safe to call GetParam method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 210 of file GC_Query_.hpp.

References CGC_Query_Base::IsSetParam().

Referenced by CGC_Query_Base::GetParam().

CanGetPartial()

bool CGC_AssemblyDesc_Base::CanGetPartial ( void  ) const

inline

Check if it is safe to call GetPartial method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1444 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetPartial().

Referenced by CGC_AssemblyDesc_Base::GetPartial().

CanGetParts()

bool CGC_Genome_Base::CanGetParts ( void  ) const

inline

Check if it is safe to call GetParts method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 415 of file GC_Genome_.hpp.

CanGetPatch_type()

bool CGC_Sequence_Base::CanGetPatch_type ( void  ) const

inline

Check if it is safe to call GetPatch_type method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 690 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::IsSetPatch_type().

Referenced by CGC_Sequence_Base::GetPatch_type().

CanGetPrimary_assembly()

bool CGC_AssemblySet_Base::CanGetPrimary_assembly ( void  ) const

inline

Check if it is safe to call GetPrimary_assembly method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 588 of file GC_AssemblySet_.hpp.

Referenced by CGencollIdMapper::x_FindParentSequence().

CanGetProject_id()

bool CGC_Project_Base::CanGetProject_id ( void  ) const

inline

Check if it is safe to call GetProject_id method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 253 of file GC_Project_.hpp.

References CGC_Project_Base::IsSetProject_id().

Referenced by CGC_Project_Base::GetProject_id().

CanGetProject_role()

bool CGC_Project_Base::CanGetProject_role ( void  ) const

inline

Check if it is safe to call GetProject_role method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 206 of file GC_Project_.hpp.

References CGC_Project_Base::IsSetProject_role().

Referenced by CGC_Project_Base::GetProject_role().

CanGetProjects() [1/2]

bool CGC_AssemblyDesc_Base::CanGetProjects ( void  ) const

inline

Check if it is safe to call GetProjects method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 904 of file GC_AssemblyDesc_.hpp.

CanGetProjects() [2/2]

bool CGC_Genome_Base::CanGetProjects ( void  ) const

inline

Check if it is safe to call GetProjects method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 344 of file GC_Genome_.hpp.

CanGetPublic()

bool CGC_SeqIdAlias_Base::CanGetPublic ( void  ) const

inline

Check if it is safe to call GetPublic method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 306 of file GC_SeqIdAlias_.hpp.

CanGetQuery()

bool CGC_Assemblies_Base::CanGetQuery ( void  ) const

inline

Check if it is safe to call GetQuery method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 197 of file GC_Assemblies_.hpp.

CanGetRefseq()

bool CGC_DbTagAlias_Base::CanGetRefseq ( void  ) const

inline

Check if it is safe to call GetRefseq method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 260 of file GC_DbTagAlias_.hpp.

References CGC_DbTagAlias_Base::IsSetRefseq().

Referenced by CGC_DbTagAlias_Base::GetRefseq().

CanGetRelease_level()

bool CGC_AssemblyDesc_Base::CanGetRelease_level ( void  ) const

inline

Check if it is safe to call GetRelease_level method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1538 of file GC_AssemblyDesc_.hpp.

CanGetRelease_status()

bool CGC_AssemblyDesc_Base::CanGetRelease_status ( void  ) const

inline

Check if it is safe to call GetRelease_status method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1305 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetRelease_status().

Referenced by CGC_AssemblyDesc_Base::GetRelease_status().

CanGetRelease_type()

bool CGC_AssemblyDesc_Base::CanGetRelease_type ( void  ) const

inline

Check if it is safe to call GetRelease_type method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1258 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetRelease_type().

Referenced by CGC_AssemblyDesc_Base::GetRelease_type().

CanGetRoles()

bool CGC_Sequence_Base::CanGetRoles ( void  ) const

inline

Check if it is safe to call GetRoles method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 737 of file GC_Sequence_.hpp.

Referenced by CTableDataGCAssembly::GetStringValue(), CGC_Sequence::HasRole(), and CGencollIdMapper::x_MakeSpecForSeq().

CanGetSeq_id()

bool CGC_Sequence_Base::CanGetSeq_id ( void  ) const

inline

Check if it is safe to call GetSeq_id method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 522 of file GC_Sequence_.hpp.

Referenced by CGencollIdMapper::x_CanSeqMeetSpec(), and CGencollIdMapper::x_GetIdFromSeqAndSpec().

CanGetSeq_id_synonyms()

bool CGC_Sequence_Base::CanGetSeq_id_synonyms ( void  ) const

inline

Check if it is safe to call GetSeq_id_synonyms method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 552 of file GC_Sequence_.hpp.

Referenced by CGencollIdMapper::x_CanSeqMeetSpec(), CGencollIdMapper::x_GetIdFromSeqAndSpec(), CGencollIdMapper::x_MakeSpecForSeq(), CGencollIdMapper::x_RecursiveSeqFix(), and CGencollIdMapper::x_StripPseudoSeq().

CanGetSeqs()

bool CGC_TaggedSequences_Base::CanGetSeqs ( void  ) const

inline

Check if it is safe to call GetSeqs method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 262 of file GC_TaggedSequences_.hpp.

CanGetSequence()

bool CGC_Replicon_Base::CanGetSequence ( void  ) const

inline

Check if it is safe to call GetSequence method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 553 of file GC_Replicon_.hpp.

CanGetSequences()

bool CGC_Sequence_Base::CanGetSequences ( void  ) const

inline

Check if it is safe to call GetSequences method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 623 of file GC_Sequence_.hpp.

Referenced by CGencollIdMapper::x_CanSeqMeetSpec(), CGencollIdMapper::x_IsParentSequence(), and CGencollIdMapper::x_RecursiveSeqFix().

CanGetSet_type()

bool CGC_AssemblySet_Base::CanGetSet_type ( void  ) const

inline

Check if it is safe to call GetSet_type method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 464 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::IsSetSet_type().

Referenced by CGC_AssemblySet_Base::GetSet_type().

CanGetSimilarity() [1/2]

bool CGC_DbTagAlias_Base::CanGetSimilarity ( void  ) const

inline

Check if it is safe to call GetSimilarity method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 302 of file GC_DbTagAlias_.hpp.

References CGC_DbTagAlias_Base::IsSetSimilarity().

Referenced by CGC_DbTagAlias_Base::GetSimilarity().

CanGetSimilarity() [2/2]

bool CGC_SeqIdAlias_Base::CanGetSimilarity ( void  ) const

inline

Check if it is safe to call GetSimilarity method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 378 of file GC_SeqIdAlias_.hpp.

References CGC_SeqIdAlias_Base::IsSetSimilarity().

Referenced by CGC_SeqIdAlias_Base::GetSimilarity().

CanGetState()

bool CGC_TaggedSequences_Base::CanGetState ( void  ) const

inline

Check if it is safe to call GetState method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 215 of file GC_TaggedSequences_.hpp.

References CGC_TaggedSequences_Base::IsSetState().

Referenced by CGC_TaggedSequences_Base::GetState().

CanGetStats() [1/3]

bool CGC_AssemblySet_Base::CanGetStats ( void  ) const

inline

Check if it is safe to call GetStats method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 643 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::IsSetStats().

Referenced by CGC_AssemblySet_Base::GetStats().

CanGetStats() [2/3]

bool CGC_AssemblyUnit_Base::CanGetStats ( void  ) const

inline

Check if it is safe to call GetStats method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 604 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::IsSetStats().

Referenced by CGC_AssemblyUnit_Base::GetStats().

CanGetStats() [3/3]

bool CGC_Sequence_Base::CanGetStats ( void  ) const

inline

Check if it is safe to call GetStats method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 669 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::IsSetStats().

Referenced by CGC_Sequence_Base::GetStats(), and CGC_Sequence::x_GetLength().

CanGetStats_category()

bool CGC_Scaf_stats_Base::CanGetStats_category ( void  ) const

inline

Check if it is safe to call GetStats_category method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 281 of file GC_Scaf_stats_.hpp.

References CGC_Scaf_stats_Base::IsSetStats_category().

Referenced by CGC_Scaf_stats_Base::GetStats_category().

CanGetStructure()

bool CGC_Sequence_Base::CanGetStructure ( void  ) const

inline

Check if it is safe to call GetStructure method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 648 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::IsSetStructure().

Referenced by CGC_Sequence_Base::GetStructure(), and CGencollIdMapper::x_RecursiveSeqFix().

CanGetSubmitter_date()

bool CGC_AssemblyDesc_Base::CanGetSubmitter_date ( void  ) const

inline

Check if it is safe to call GetSubmitter_date method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1402 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetSubmitter_date().

Referenced by CGC_AssemblyDesc_Base::GetSubmitter_date().

CanGetSubmitter_name()

bool CGC_AssemblyDesc_Base::CanGetSubmitter_name ( void  ) const

inline

Check if it is safe to call GetSubmitter_name method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 976 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetSubmitter_name().

Referenced by CGC_AssemblyDesc_Base::GetSubmitter_name().

CanGetSubmitter_organization()

bool CGC_AssemblyDesc_Base::CanGetSubmitter_organization ( void  ) const

inline

Check if it is safe to call GetSubmitter_organization method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1588 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetSubmitter_organization().

Referenced by CGC_AssemblyDesc_Base::GetSubmitter_organization().

CanGetSynonyms()

bool CGC_AssemblyDesc_Base::CanGetSynonyms ( void  ) const

inline

Check if it is safe to call GetSynonyms method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1377 of file GC_AssemblyDesc_.hpp.

CanGetUnaligned_scaf()

bool CGC_SequenceStats_Base::CanGetUnaligned_scaf ( void  ) const

inline

Check if it is safe to call GetUnaligned_scaf method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 463 of file GC_SequenceStats_.hpp.

CanGetUnordered_scaf()

bool CGC_SequenceStats_Base::CanGetUnordered_scaf ( void  ) const

inline

Check if it is safe to call GetUnordered_scaf method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 388 of file GC_SequenceStats_.hpp.

CanGetUnplaced_scaf()

bool CGC_SequenceStats_Base::CanGetUnplaced_scaf ( void  ) const

inline

Check if it is safe to call GetUnplaced_scaf method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 413 of file GC_SequenceStats_.hpp.

CanGetUnplaced_stats()

bool CGC_AssemblyUnit_Base::CanGetUnplaced_stats ( void  ) const

inline

Check if it is safe to call GetUnplaced_stats method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 625 of file GC_AssemblyUnit_.hpp.

CanGetUnplaced_unlocalized_stats()

bool CGC_AssemblyUnit_Base::CanGetUnplaced_unlocalized_stats ( void  ) const

inline

Check if it is safe to call GetUnplaced_unlocalized_stats method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 650 of file GC_AssemblyUnit_.hpp.

CanGetValue() [1/2]

bool CGC_Query_Base::CanGetValue ( void  ) const

inline

Check if it is safe to call GetValue method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 257 of file GC_Query_.hpp.

References CGC_Query_Base::IsSetValue().

Referenced by CGC_Query_Base::GetValue().

CanGetValue() [2/2]

bool CGC_Scaf_stats_Base::CanGetValue ( void  ) const

inline

Check if it is safe to call GetValue method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 328 of file GC_Scaf_stats_.hpp.

References CGC_Scaf_stats_Base::IsSetValue().

Referenced by CGC_Scaf_stats_Base::GetValue().

CanGetWgs_acc_number()

bool CGC_AssemblyDesc_Base::CanGetWgs_acc_number ( void  ) const

inline

Check if it is safe to call GetWgs_acc_number method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1211 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetWgs_acc_number().

Referenced by CGC_AssemblyDesc_Base::GetWgs_acc_number().

CanGetWgs_acc_prefix()

bool CGC_AssemblyDesc_Base::CanGetWgs_acc_prefix ( void  ) const

inline

Check if it is safe to call GetWgs_acc_prefix method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1164 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetWgs_acc_prefix().

Referenced by CGC_AssemblyDesc_Base::GetWgs_acc_prefix().

CGC_Assemblies() [1/2]

CGC_Assemblies::CGC_Assemblies ( const CGC_Assemblies &  value )

private

CGC_Assemblies() [2/2]

CGC_Assemblies::CGC_Assemblies ( void  )

inline

Definition at line 86 of file GC_Assemblies.hpp.

CGC_Assemblies_Base() [1/2]

CGC_Assemblies_Base::CGC_Assemblies_Base ( const CGC_Assemblies_Base &  )

private

CGC_Assemblies_Base() [2/2]

END_CLASS_INFO CGC_Assemblies_Base::CGC_Assemblies_Base

(

void

)

Definition at line 82 of file GC_Assemblies_.cpp.

References CGC_Assemblies_Base::m_set_State.

CGC_Assembly_Base() [1/2]

CGC_Assembly_Base::CGC_Assembly_Base ( const CGC_Assembly_Base &  )

private

CGC_Assembly_Base() [2/2]

END_CHOICE_INFO CGC_Assembly_Base::CGC_Assembly_Base

(

void

)

Definition at line 160 of file GC_Assembly_.cpp.

CGC_AssemblyDesc() [1/2]

CGC_AssemblyDesc::CGC_AssemblyDesc ( const CGC_AssemblyDesc &  value )

private

CGC_AssemblyDesc() [2/2]

CGC_AssemblyDesc::CGC_AssemblyDesc ( void  )

inline

Definition at line 86 of file GC_AssemblyDesc.hpp.

CGC_AssemblyDesc_Base() [1/2]

CGC_AssemblyDesc_Base::CGC_AssemblyDesc_Base ( const CGC_AssemblyDesc_Base &  )

private

CGC_AssemblyDesc_Base() [2/2]

END_CLASS_INFO CGC_AssemblyDesc_Base::CGC_AssemblyDesc_Base

(

void

)

Definition at line 232 of file GC_AssemblyDesc_.cpp.

References CGC_AssemblyDesc_Base::m_set_State.

CGC_AssemblySet_Base() [1/2]

CGC_AssemblySet_Base::CGC_AssemblySet_Base ( const CGC_AssemblySet_Base &  )

private

CGC_AssemblySet_Base() [2/2]

END_CLASS_INFO CGC_AssemblySet_Base::CGC_AssemblySet_Base

(

void

)

Definition at line 166 of file GC_AssemblySet_.cpp.

References CObject::IsAllocatedInPool(), CGC_AssemblySet_Base::m_set_State, CGC_AssemblySet_Base::ResetDesc(), and CGC_AssemblySet_Base::ResetPrimary_assembly().

CGC_AssemblyUnit_Base() [1/2]

CGC_AssemblyUnit_Base::CGC_AssemblyUnit_Base ( const CGC_AssemblyUnit_Base &  )

private

CGC_AssemblyUnit_Base() [2/2]

END_CLASS_INFO CGC_AssemblyUnit_Base::CGC_AssemblyUnit_Base

(

void

)

Definition at line 158 of file GC_AssemblyUnit_.cpp.

References CObject::IsAllocatedInPool(), CGC_AssemblyUnit_Base::m_set_State, and CGC_AssemblyUnit_Base::ResetDesc().

CGC_DbTagAlias() [1/2]

CGC_DbTagAlias::CGC_DbTagAlias ( const CGC_DbTagAlias &  value )

private

CGC_DbTagAlias() [2/2]

CGC_DbTagAlias::CGC_DbTagAlias ( void  )

inline

Definition at line 86 of file GC_DbTagAlias.hpp.

CGC_DbTagAlias_Base() [1/2]

CGC_DbTagAlias_Base::CGC_DbTagAlias_Base ( const CGC_DbTagAlias_Base &  )

private

CGC_DbTagAlias_Base() [2/2]

END_CLASS_INFO CGC_DbTagAlias_Base::CGC_DbTagAlias_Base

(

void

)

Definition at line 115 of file GC_DbTagAlias_.cpp.

References CGC_DbTagAlias_Base::m_set_State.

CGC_External_Seqid() [1/2]

CGC_External_Seqid::CGC_External_Seqid ( const CGC_External_Seqid &  value )

private

CGC_External_Seqid() [2/2]

CGC_External_Seqid::CGC_External_Seqid ( void  )

inline

Definition at line 86 of file GC_External_Seqid.hpp.

CGC_External_Seqid_Base() [1/2]

CGC_External_Seqid_Base::CGC_External_Seqid_Base ( const CGC_External_Seqid_Base &  )

private

CGC_External_Seqid_Base() [2/2]

END_CLASS_INFO CGC_External_Seqid_Base::CGC_External_Seqid_Base

(

void

)

Definition at line 89 of file GC_External_Seqid_.cpp.

References CObject::IsAllocatedInPool(), CGC_External_Seqid_Base::m_set_State, and CGC_External_Seqid_Base::ResetId().

CGC_Genome() [1/2]

CGC_Genome::CGC_Genome ( const CGC_Genome &  value )

private

CGC_Genome() [2/2]

CGC_Genome::CGC_Genome ( void  )

inline

Definition at line 86 of file GC_Genome.hpp.

CGC_Genome_Base() [1/2]

CGC_Genome_Base::CGC_Genome_Base ( const CGC_Genome_Base &  )

private

CGC_Genome_Base() [2/2]

END_CLASS_INFO CGC_Genome_Base::CGC_Genome_Base

(

void

)

Definition at line 119 of file GC_Genome_.cpp.

References CGC_Genome_Base::m_set_State.

CGC_GenomicPart() [1/2]

CGC_GenomicPart::CGC_GenomicPart ( const CGC_GenomicPart &  value )

private

CGC_GenomicPart() [2/2]

CGC_GenomicPart::CGC_GenomicPart ( void  )

inline

Definition at line 86 of file GC_GenomicPart.hpp.

CGC_GenomicPart_Base() [1/2]

CGC_GenomicPart_Base::CGC_GenomicPart_Base ( const CGC_GenomicPart_Base &  )

private

CGC_GenomicPart_Base() [2/2]

END_CHOICE_INFO CGC_GenomicPart_Base::CGC_GenomicPart_Base

(

void

)

Definition at line 189 of file GC_GenomicPart_.cpp.

CGC_Project() [1/2]

CGC_Project::CGC_Project ( const CGC_Project &  value )

private

CGC_Project() [2/2]

CGC_Project::CGC_Project ( void  )

inline

Definition at line 86 of file GC_Project.hpp.

CGC_Project_Base() [1/2]

CGC_Project_Base::CGC_Project_Base ( const CGC_Project_Base &  )

private

CGC_Project_Base() [2/2]

END_CLASS_INFO CGC_Project_Base::CGC_Project_Base

(

void

)

Definition at line 74 of file GC_Project_.cpp.

References CGC_Project_Base::m_set_State.

CGC_Query() [1/2]

CGC_Query::CGC_Query ( const CGC_Query &  value )

private

CGC_Query() [2/2]

CGC_Query::CGC_Query ( void  )

inline

Definition at line 86 of file GC_Query.hpp.

CGC_Query_Base() [1/2]

CGC_Query_Base::CGC_Query_Base ( const CGC_Query_Base &  )

private

CGC_Query_Base() [2/2]

END_CLASS_INFO CGC_Query_Base::CGC_Query_Base

(

void

)

Definition at line 80 of file GC_Query_.cpp.

References CGC_Query_Base::m_set_State.

CGC_Replicon_Base() [1/2]

CGC_Replicon_Base::CGC_Replicon_Base ( const CGC_Replicon_Base &  )

private

CGC_Replicon_Base() [2/2]

END_CLASS_INFO CGC_Replicon_Base::CGC_Replicon_Base

(

void

)

Definition at line 198 of file GC_Replicon_.cpp.

References CObject::IsAllocatedInPool(), CGC_Replicon_Base::m_set_State, and CGC_Replicon_Base::ResetSequence().

CGC_Scaf_stats() [1/2]

CGC_Scaf_stats::CGC_Scaf_stats ( const CGC_Scaf_stats &  value )

private

CGC_Scaf_stats() [2/2]

CGC_Scaf_stats::CGC_Scaf_stats ( void  )

inline

Definition at line 86 of file GC_Scaf_stats.hpp.

CGC_Scaf_stats_Base() [1/2]

CGC_Scaf_stats_Base::CGC_Scaf_stats_Base ( const CGC_Scaf_stats_Base &  )

private

CGC_Scaf_stats_Base() [2/2]

END_CLASS_INFO CGC_Scaf_stats_Base::CGC_Scaf_stats_Base

(

void

)

Definition at line 149 of file GC_Scaf_stats_.cpp.

References CGC_Scaf_stats_Base::m_set_State.

CGC_SeqIdAlias_Base() [1/2]

CGC_SeqIdAlias_Base::CGC_SeqIdAlias_Base ( const CGC_SeqIdAlias_Base &  )

private

CGC_SeqIdAlias_Base() [2/2]

END_CLASS_INFO CGC_SeqIdAlias_Base::CGC_SeqIdAlias_Base

(

void

)

Definition at line 131 of file GC_SeqIdAlias_.cpp.

References CObject::IsAllocatedInPool(), CGC_SeqIdAlias_Base::m_set_State, and CGC_SeqIdAlias_Base::ResetPublic().

CGC_Sequence_Base() [1/2]

CGC_Sequence_Base::CGC_Sequence_Base ( const CGC_Sequence_Base &  )

private

CGC_Sequence_Base() [2/2]

END_CLASS_INFO CGC_Sequence_Base::CGC_Sequence_Base

(

void

)

Definition at line 188 of file GC_Sequence_.cpp.

References CObject::IsAllocatedInPool(), CGC_Sequence_Base::m_set_State, and CGC_Sequence_Base::ResetSeq_id().

CGC_SequenceStats() [1/2]

CGC_SequenceStats::CGC_SequenceStats ( const CGC_SequenceStats &  value )

private

CGC_SequenceStats() [2/2]

CGC_SequenceStats::CGC_SequenceStats ( void  )

inline

Definition at line 86 of file GC_SequenceStats.hpp.

CGC_SequenceStats_Base() [1/2]

CGC_SequenceStats_Base::CGC_SequenceStats_Base ( const CGC_SequenceStats_Base &  )

private

CGC_SequenceStats_Base() [2/2]

END_CLASS_INFO CGC_SequenceStats_Base::CGC_SequenceStats_Base

(

void

)

Definition at line 113 of file GC_SequenceStats_.cpp.

References CGC_SequenceStats_Base::m_set_State.

CGC_TaggedSequences() [1/2]

CGC_TaggedSequences::CGC_TaggedSequences ( const CGC_TaggedSequences &  value )

private

CGC_TaggedSequences() [2/2]

CGC_TaggedSequences::CGC_TaggedSequences ( void  )

inline

Definition at line 86 of file GC_TaggedSequences.hpp.

CGC_TaggedSequences_Base() [1/2]

CGC_TaggedSequences_Base::CGC_TaggedSequences_Base ( const CGC_TaggedSequences_Base &  )

private

CGC_TaggedSequences_Base() [2/2]

END_CLASS_INFO CGC_TaggedSequences_Base::CGC_TaggedSequences_Base

(

void

)

Definition at line 88 of file GC_TaggedSequences_.cpp.

References CGC_TaggedSequences_Base::m_set_State.

CGC_TypedSeqId() [1/2]

CGC_TypedSeqId::CGC_TypedSeqId ( const CGC_TypedSeqId &  value )

private

CGC_TypedSeqId() [2/2]

CGC_TypedSeqId::CGC_TypedSeqId ( void  )

inline

Definition at line 86 of file GC_TypedSeqId.hpp.

CGC_TypedSeqId_Base() [1/2]

CGC_TypedSeqId_Base::CGC_TypedSeqId_Base ( const CGC_TypedSeqId_Base &  )

private

CGC_TypedSeqId_Base() [2/2]

END_CHOICE_INFO CGC_TypedSeqId_Base::CGC_TypedSeqId_Base

(

void

)

Definition at line 217 of file GC_TypedSeqId_.cpp.

CheckSelected() [1/4]

void CGC_Assembly_Base::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 237 of file GC_Assembly_.hpp.

References CGC_Assembly_Base::m_choice, and CGC_Assembly_Base::ThrowInvalidSelection().

Referenced by CGC_Assembly_Base::GetAssembly_set(), and CGC_Assembly_Base::GetUnit().

CheckSelected() [2/4]

void CGC_GenomicPart_Base::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 263 of file GC_GenomicPart_.hpp.

References CGC_GenomicPart_Base::m_choice, and CGC_GenomicPart_Base::ThrowInvalidSelection().

Referenced by CGC_GenomicPart_Base::GetAssembly(), CGC_GenomicPart_Base::GetMol(), and CGC_GenomicPart_Base::GetSeqs().

CheckSelected() [3/4]

void CGC_Replicon_Base::C_Sequence::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 404 of file GC_Replicon_.hpp.

CheckSelected() [4/4]

void CGC_TypedSeqId_Base::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 291 of file GC_TypedSeqId_.hpp.

References CGC_TypedSeqId_Base::m_choice, and CGC_TypedSeqId_Base::ThrowInvalidSelection().

Referenced by CGC_TypedSeqId_Base::GetExternal(), CGC_TypedSeqId_Base::GetGenbank(), CGC_TypedSeqId_Base::GetPrivate(), and CGC_TypedSeqId_Base::GetRefseq().

DECLARE_INTERNAL_TYPE_INFO() [1/19]

CGC_Assemblies_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [2/19]

CGC_Assembly_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [3/19]

CGC_AssemblyDesc_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [4/19]

CGC_AssemblySet_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [5/19]

CGC_AssemblyUnit_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [6/19]

CGC_DbTagAlias_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [7/19]

CGC_External_Seqid_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [8/19]

CGC_Genome_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [9/19]

CGC_GenomicPart_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [10/19]

CGC_Project_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [11/19]

CGC_Query_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [12/19]

CGC_Replicon_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [13/19]

CGC_Replicon_Base::C_Sequence::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [14/19]

CGC_Scaf_stats_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [15/19]

CGC_SeqIdAlias_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [16/19]

CGC_Sequence_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [17/19]

CGC_SequenceStats_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [18/19]

CGC_TaggedSequences_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [19/19]

CGC_TypedSeqId_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DoSelect() [1/4]

void CGC_Assembly_Base::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 71 of file GC_Assembly_.cpp.

References CObject::AddReference(), CGC_Assembly_Base::e_Assembly_set, CGC_Assembly_Base::e_Unit, CGC_Assembly_Base::m_choice, and CGC_Assembly_Base::m_object.

DoSelect() [2/4]

void CGC_GenomicPart_Base::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 73 of file GC_GenomicPart_.cpp.

References CObject::AddReference(), CGC_GenomicPart_Base::e_Assembly, CGC_GenomicPart_Base::e_Mol, CGC_GenomicPart_Base::e_Seqs, CGC_GenomicPart_Base::m_choice, and CGC_GenomicPart_Base::m_object.

DoSelect() [3/4]

void CGC_Replicon_Base::C_Sequence::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 72 of file GC_Replicon_.cpp.

References CObject::AddReference().

DoSelect() [4/4]

void CGC_TypedSeqId_Base::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 74 of file GC_TypedSeqId_.cpp.

References CObject::AddReference(), CGC_TypedSeqId_Base::e_External, CGC_TypedSeqId_Base::e_Genbank, CGC_TypedSeqId_Base::e_Private, CGC_TypedSeqId_Base::e_Refseq, CGC_TypedSeqId_Base::m_choice, and CGC_TypedSeqId_Base::m_object.

EClass() [1/2]

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CGC_AssemblySet_Base::EClass ( void  )

static

Access to EClass's attributes (values, names) as defined in spec.

EClass() [2/2]

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CGC_AssemblyUnit_Base::EClass ( void  )

static

Access to EClass's attributes (values, names) as defined in spec.

EPatch_type()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CGC_Sequence_Base::EPatch_type ( void  )

static

Access to EPatch_type's attributes (values, names) as defined in spec.

ERelease_level()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CGC_AssemblyDesc_Base::ERelease_level ( void  )

static

Access to ERelease_level's attributes (values, names) as defined in spec.

ERelease_status()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CGC_AssemblyDesc_Base::ERelease_status ( void  )

static

Access to ERelease_status's attributes (values, names) as defined in spec.

ERelease_type()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CGC_AssemblyDesc_Base::ERelease_type ( void  )

static

Access to ERelease_type's attributes (values, names) as defined in spec.

ESet_type()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CGC_AssemblySet_Base::ESet_type ( void  )

static

Access to ESet_type's attributes (values, names) as defined in spec.

ESimilarity() [1/2]

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CGC_DbTagAlias_Base::ESimilarity ( void  )

static

Access to ESimilarity's attributes (values, names) as defined in spec.

ESimilarity() [2/2]

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CGC_SeqIdAlias_Base::ESimilarity ( void  )

static

Access to ESimilarity's attributes (values, names) as defined in spec.

EState()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CGC_TaggedSequences_Base::EState ( void  )

static

Access to EState's attributes (values, names) as defined in spec.

EStats_category()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CGC_Scaf_stats_Base::EStats_category ( void  )

static

Access to EStats_category's attributes (values, names) as defined in spec.

GetAligned_scaf()

const CGC_SequenceStats_Base::TAligned_scaf & CGC_SequenceStats_Base::GetAligned_scaf ( void  ) const

inline

Get the Aligned_scaf member data.

Returns

Reference to the member data.

Definition at line 444 of file GC_SequenceStats_.hpp.

References CGC_SequenceStats_Base::m_Aligned_scaf.

GetAll_scaf()

const CGC_SequenceStats_Base::TAll_scaf & CGC_SequenceStats_Base::GetAll_scaf ( void  ) const

inline

Get the All_scaf member data.

Returns

Reference to the member data.

Definition at line 344 of file GC_SequenceStats_.hpp.

References CGC_SequenceStats_Base::m_All_scaf.

GetAnnot() [1/2]

const CGC_AssemblyDesc_Base::TAnnot & CGC_AssemblyDesc_Base::GetAnnot ( void  ) const

inline

Get the Annot member data.

Returns

Reference to the member data.

Definition at line 1358 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_Annot.

Referenced by CGC_Assembly_Parser::x_CopyData().

GetAnnot() [2/2]

const CGC_Sequence_Base::TAnnot & CGC_Sequence_Base::GetAnnot ( void  ) const

inline

Get the Annot member data.

Returns

Reference to the member data.

Definition at line 604 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::m_Annot.

Referenced by CGC_Assembly_Parser::x_ParseGCSequence().

GetAssemblies()

const CGC_Assemblies_Base::TAssemblies & CGC_Assemblies_Base::GetAssemblies ( void  ) const

inline

Get the Assemblies member data.

Returns

Reference to the member data.

Definition at line 228 of file GC_Assemblies_.hpp.

References CGC_Assemblies_Base::m_Assemblies.

Referenced by CAssemblyObjectLoader::Execute().

GetAssembly()

const CGC_GenomicPart_Base::TAssembly & CGC_GenomicPart_Base::GetAssembly

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 108 of file GC_GenomicPart_.cpp.

References CGC_GenomicPart_Base::CheckSelected(), CGC_GenomicPart_Base::e_Assembly, and CGC_GenomicPart_Base::m_object.

GetAssembly_set()

const CGC_Assembly_Base::TAssembly_set & CGC_Assembly_Base::GetAssembly_set

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 124 of file GC_Assembly_.cpp.

References CGC_Assembly_Base::CheckSelected(), CGC_Assembly_Base::e_Assembly_set, and CGC_Assembly_Base::m_object.

Referenced by CAssemblyObjectLoader::Execute(), GetAssebmlyDesc(), CGC_Assembly::GetAssemblyUnits(), CGC_Assembly::GetDesc(), CGC_Assembly::GetFullAssemblies(), CGC_Assembly::GetName(), CGC_Assembly::GetTaxId(), CGC_Assembly::IsGenBank(), CGC_AssemblyUnit::IsPrimaryUnit(), CGC_Assembly::IsRefSeq(), CGC_Assembly::IsTargetSetReference(), s_Extract(), CIdMapperGCAssembly::x_AddAliasMappings(), CGC_Assembly::x_GetId(), CSeq_loc_Mapper::x_InitGCAssembly(), and CGC_Assembly_Parser::x_ParseGCAssembly().

GetChr_names()

const CGC_Genome_Base::TChr_names & CGC_Genome_Base::GetChr_names ( void  ) const

inline

Get the Chr_names member data.

Returns

Reference to the member data.

Definition at line 396 of file GC_Genome_.hpp.

References CGC_Genome_Base::m_Chr_names.

GetClass() [1/2]

CGC_AssemblySet_Base::TClass CGC_AssemblySet_Base::GetClass ( void  ) const

inline

Get the Class member data.

Returns

Copy of the member data.

Definition at line 524 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::CanGetClass(), CGC_AssemblySet_Base::m_Class, and CSerialObject::ThrowUnassigned().

GetClass() [2/2]

CGC_AssemblyUnit_Base::TClass CGC_AssemblyUnit_Base::GetClass ( void  ) const

inline

Get the Class member data.

Returns

Copy of the member data.

Definition at line 490 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::CanGetClass(), CGC_AssemblyUnit_Base::m_Class, and CSerialObject::ThrowUnassigned().

Referenced by CGC_Assembly::GetUnitClass().

GetCoverage()

CGC_AssemblyDesc_Base::TCoverage CGC_AssemblyDesc_Base::GetCoverage ( void  ) const

inline

Get the Coverage member data.

Returns

Copy of the member data.

Definition at line 1504 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::CanGetCoverage(), CGC_AssemblyDesc_Base::m_Coverage, and CSerialObject::ThrowUnassigned().

GetDesc() [1/2]

const CGC_AssemblySet_Base::TDesc & CGC_AssemblySet_Base::GetDesc ( void  ) const

inline

Get the Desc member data.

Returns

Reference to the member data.

Definition at line 564 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::m_Desc, and CGC_AssemblySet_Base::ResetDesc().

Referenced by CAssemblyObjectLoader::Execute(), CGC_Assembly::GetDesc(), and CGC_Assembly_Parser::x_ParseGCAssembly().

GetDesc() [2/2]

const CGC_AssemblyUnit_Base::TDesc & CGC_AssemblyUnit_Base::GetDesc ( void  ) const

inline

Get the Desc member data.

Returns

Reference to the member data.

Definition at line 530 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::m_Desc, and CGC_AssemblyUnit_Base::ResetDesc().

Referenced by CAssemblyObjectLoader::Execute(), CGC_Assembly::GetDesc(), CGC_AssemblyUnit::GetFileSafeName(), CGC_AssemblyUnit::GetName(), and CGC_Assembly_Parser::x_ParseGCAssembly().

GetDescr() [1/3]

const CGC_AssemblyDesc_Base::TDescr & CGC_AssemblyDesc_Base::GetDescr ( void  ) const

inline

Get the Descr member data.

Returns

Reference to the member data.

Definition at line 1429 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::CanGetDescr(), CGC_AssemblyDesc_Base::m_Descr, and CSerialObject::ThrowUnassigned().

Referenced by CGC_Assembly_Parser::x_CopyData().

GetDescr() [2/3]

const CGC_Genome_Base::TDescr & CGC_Genome_Base::GetDescr ( void  ) const

inline

Get the Descr member data.

Returns

Reference to the member data.

Definition at line 375 of file GC_Genome_.hpp.

References CGC_Genome_Base::CanGetDescr(), CGC_Genome_Base::m_Descr, and CSerialObject::ThrowUnassigned().

GetDescr() [3/3]

const CGC_Sequence_Base::TDescr & CGC_Sequence_Base::GetDescr ( void  ) const

inline

Get the Descr member data.

Returns

Reference to the member data.

Definition at line 583 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::CanGetDescr(), CGC_Sequence_Base::m_Descr, and CSerialObject::ThrowUnassigned().

Referenced by x_GetMolLocTypeUserObj(), and CGC_Assembly_Parser::x_ParseGCSequence().

GetDisplay_name()

const CGC_AssemblyDesc_Base::TDisplay_name & CGC_AssemblyDesc_Base::GetDisplay_name ( void  ) const

inline

Get the Display_name member data.

Returns

Reference to the member data.

Definition at line 1029 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::CanGetDisplay_name(), CGC_AssemblyDesc_Base::m_Display_name, and CSerialObject::ThrowUnassigned().

GetExternal() [1/2]

const CGC_External_Seqid_Base::TExternal & CGC_External_Seqid_Base::GetExternal ( void  ) const

inline

Get the External member data.

Returns

Reference to the member data.

Definition at line 215 of file GC_External_Seqid_.hpp.

References CGC_External_Seqid_Base::CanGetExternal(), CGC_External_Seqid_Base::m_External, and CSerialObject::ThrowUnassigned().

Referenced by CGencollIdMapper::GetSynonyms(), CGencollIdMapper::x_GetIdFromSeqAndSpec(), and CGencollIdMapper::x_MakeSpecForSeq().

GetExternal() [2/2]

const CGC_TypedSeqId_Base::TExternal & CGC_TypedSeqId_Base::GetExternal

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 179 of file GC_TypedSeqId_.cpp.

References CGC_TypedSeqId_Base::CheckSelected(), CGC_TypedSeqId_Base::e_External, and CGC_TypedSeqId_Base::m_object.

Referenced by CSeq_loc_Mapper::x_IsUCSCRandomChr(), and CGC_Assembly_Parser::x_ParseGCSequence().

GetFilesafe_name()

const CGC_AssemblyDesc_Base::TFilesafe_name & CGC_AssemblyDesc_Base::GetFilesafe_name ( void  ) const

inline

Get the Filesafe_name member data.

Returns

Reference to the member data.

Definition at line 1123 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::CanGetFilesafe_name(), CGC_AssemblyDesc_Base::m_Filesafe_name, and CSerialObject::ThrowUnassigned().

Referenced by CGC_Assembly::GetFileSafeName(), and CGC_AssemblyUnit::GetFileSafeName().

GetGenbank() [1/2]

const CGC_DbTagAlias_Base::TGenbank & CGC_DbTagAlias_Base::GetGenbank ( void  ) const

inline

Get the Genbank member data.

Returns

Reference to the member data.

Definition at line 287 of file GC_DbTagAlias_.hpp.

References CGC_DbTagAlias_Base::CanGetGenbank(), CGC_DbTagAlias_Base::m_Genbank, and CSerialObject::ThrowUnassigned().

GetGenbank() [2/2]

const CGC_TypedSeqId_Base::TGenbank & CGC_TypedSeqId_Base::GetGenbank

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 113 of file GC_TypedSeqId_.cpp.

References CGC_TypedSeqId_Base::CheckSelected(), CGC_TypedSeqId_Base::e_Genbank, and CGC_TypedSeqId_Base::m_object.

Referenced by CSeq_loc_Mapper::x_IsUCSCRandomChr(), and CGC_Assembly_Parser::x_ParseGCSequence().

GetGi()

const CGC_SeqIdAlias_Base::TGi & CGC_SeqIdAlias_Base::GetGi ( void  ) const

inline

Get the Gi member data.

Returns

Reference to the member data.

Definition at line 363 of file GC_SeqIdAlias_.hpp.

References CGC_SeqIdAlias_Base::CanGetGi(), CGC_SeqIdAlias_Base::m_Gi, and CSerialObject::ThrowUnassigned().

Referenced by CIdMapperGCAssembly::x_AddAliasMappings(), CSeq_loc_Mapper::x_IsUCSCRandomChr(), and CGC_Assembly_Parser::x_ParseGCSequence().

GetGpipe()

const CGC_SeqIdAlias_Base::TGpipe & CGC_SeqIdAlias_Base::GetGpipe ( void  ) const

inline

Get the Gpipe member data.

Returns

Reference to the member data.

Definition at line 342 of file GC_SeqIdAlias_.hpp.

References CGC_SeqIdAlias_Base::CanGetGpipe(), CGC_SeqIdAlias_Base::m_Gpipe, and CSerialObject::ThrowUnassigned().

Referenced by CIdMapperGCAssembly::x_AddAliasMappings(), and CGC_Assembly_Parser::x_ParseGCSequence().

GetId() [1/4]

const CGC_AssemblySet_Base::TId & CGC_AssemblySet_Base::GetId ( void  ) const

inline

Get the Id member data.

Returns

Reference to the member data.

Definition at line 445 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::m_Id.

Referenced by CAssemblyObjectLoader::Execute(), and CGC_Assembly::x_GetId().

GetId() [2/4]

const CGC_AssemblyUnit_Base::TId & CGC_AssemblyUnit_Base::GetId ( void  ) const

inline

Get the Id member data.

Returns

Reference to the member data.

Definition at line 458 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::m_Id.

Referenced by CAssemblyObjectLoader::Execute(), CGC_AssemblyUnit::GetAccession(), CGC_AssemblyUnit::GetReleaseId(), and CGC_Assembly::x_GetId().

GetId() [3/4]

const CGC_External_Seqid_Base::TId & CGC_External_Seqid_Base::GetId ( void  ) const

inline

Get the Id member data.

Returns

Reference to the member data.

Definition at line 262 of file GC_External_Seqid_.hpp.

References CGC_External_Seqid_Base::m_Id, and CGC_External_Seqid_Base::ResetId().

Referenced by CGencollIdMapper::GetSynonyms(), CGencollIdMapper::x_GetIdFromSeqAndSpec(), CSeq_loc_Mapper::x_IsUCSCRandomChr(), CGencollIdMapper::x_MakeSpecForSeq(), and CGC_Assembly_Parser::x_ParseGCSequence().

GetId() [4/4]

const CGC_Genome_Base::TId & CGC_Genome_Base::GetId ( void  ) const

inline

Get the Id member data.

Returns

Reference to the member data.

Definition at line 325 of file GC_Genome_.hpp.

References CGC_Genome_Base::m_Id.

GetLocal_name()

const CGC_Replicon_Base::TLocal_name & CGC_Replicon_Base::GetLocal_name ( void  ) const

inline

Get the Local_name member data.

Returns

Reference to the member data.

Definition at line 512 of file GC_Replicon_.hpp.

References CGC_Replicon_Base::CanGetLocal_name(), CGC_Replicon_Base::m_Local_name, and CSerialObject::ThrowUnassigned().

GetLong_name()

const CGC_AssemblyDesc_Base::TLong_name & CGC_AssemblyDesc_Base::GetLong_name ( void  ) const

inline

Get the Long_name member data.

Returns

Reference to the member data.

Definition at line 1076 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::CanGetLong_name(), CGC_AssemblyDesc_Base::m_Long_name, and CSerialObject::ThrowUnassigned().

Referenced by CGCAsssemblyHandler::GetLabel().

GetMol()

const CGC_GenomicPart_Base::TMol & CGC_GenomicPart_Base::GetMol

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 130 of file GC_GenomicPart_.cpp.

References CGC_GenomicPart_Base::CheckSelected(), CGC_GenomicPart_Base::e_Mol, and CGC_GenomicPart_Base::m_object.

GetMols()

const CGC_AssemblyUnit_Base::TMols & CGC_AssemblyUnit_Base::GetMols ( void  ) const

inline

Get the Mols member data.

Returns

Reference to the member data.

Definition at line 560 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::m_Mols.

Referenced by CIdMapperGCAssembly::x_AddAliasMappings(), CGencollIdMapper::x_FindParentSequence(), CSeq_loc_Mapper::x_InitGCAssembly(), and CGC_Assembly_Parser::x_ParseGCAssembly().

GetMore_assemblies()

const CGC_AssemblySet_Base::TMore_assemblies & CGC_AssemblySet_Base::GetMore_assemblies ( void  ) const

inline

Get the More_assemblies member data.

Returns

Reference to the member data.

Definition at line 624 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::m_More_assemblies.

Referenced by CIdMapperGCAssembly::x_AddAliasMappings(), CGencollIdMapper::x_FindParentSequence(), CSeq_loc_Mapper::x_InitGCAssembly(), and CGC_Assembly_Parser::x_ParseGCAssembly().

GetName() [1/2]

const CGC_AssemblyDesc_Base::TName & CGC_AssemblyDesc_Base::GetName ( void  ) const

inline

Get the Name member data.

Returns

Reference to the member data.

Definition at line 935 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::CanGetName(), CGC_AssemblyDesc_Base::m_Name, and CSerialObject::ThrowUnassigned().

Referenced by CGCAsssemblyHandler::GetLabel(), and CGC_AssemblyUnit::GetName().

GetName() [2/2]

const CGC_Replicon_Base::TName & CGC_Replicon_Base::GetName ( void  ) const

inline

Get the Name member data.

Returns

Reference to the member data.

Definition at line 465 of file GC_Replicon_.hpp.

References CGC_Replicon_Base::CanGetName(), CGC_Replicon_Base::m_Name, and CSerialObject::ThrowUnassigned().

GetOrdered_scaf()

const CGC_SequenceStats_Base::TOrdered_scaf & CGC_SequenceStats_Base::GetOrdered_scaf ( void  ) const

inline

Get the Ordered_scaf member data.

Returns

Reference to the member data.

Definition at line 369 of file GC_SequenceStats_.hpp.

References CGC_SequenceStats_Base::m_Ordered_scaf.

GetOther_sequences()

const CGC_AssemblyUnit_Base::TOther_sequences & CGC_AssemblyUnit_Base::GetOther_sequences ( void  ) const

inline

Get the Other_sequences member data.

Returns

Reference to the member data.

Definition at line 585 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::m_Other_sequences.

Referenced by CIdMapperGCAssembly::x_AddAliasMappings(), CSeq_loc_Mapper::x_InitGCAssembly(), and CGC_Assembly_Parser::x_ParseGCAssembly().

GetParam()

const CGC_Query_Base::TParam & CGC_Query_Base::GetParam ( void  ) const

inline

Get the Param member data.

Returns

Reference to the member data.

Definition at line 216 of file GC_Query_.hpp.

References CGC_Query_Base::CanGetParam(), CGC_Query_Base::m_Param, and CSerialObject::ThrowUnassigned().

GetPartial()

CGC_AssemblyDesc_Base::TPartial CGC_AssemblyDesc_Base::GetPartial ( void  ) const

inline

Get the Partial member data.

Returns

Copy of the member data.

Definition at line 1457 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::CanGetPartial(), CGC_AssemblyDesc_Base::m_Partial, and CSerialObject::ThrowUnassigned().

GetParts()

const CGC_Genome_Base::TParts & CGC_Genome_Base::GetParts ( void  ) const

inline

Get the Parts member data.

Returns

Reference to the member data.

Definition at line 421 of file GC_Genome_.hpp.

References CGC_Genome_Base::m_Parts.

GetPatch_type()

CGC_Sequence_Base::TPatch_type CGC_Sequence_Base::GetPatch_type ( void  ) const

inline

Get the Patch_type member data.

Returns

Copy of the member data.

Definition at line 703 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::CanGetPatch_type(), CGC_Sequence_Base::m_Patch_type, and CSerialObject::ThrowUnassigned().

Referenced by CTableDataGCAssembly::GetStringValue().

GetPrimary_assembly()

const CGC_AssemblySet_Base::TPrimary_assembly & CGC_AssemblySet_Base::GetPrimary_assembly ( void  ) const

inline

Get the Primary_assembly member data.

Returns

Reference to the member data.

Definition at line 594 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::m_Primary_assembly, and CGC_AssemblySet_Base::ResetPrimary_assembly().

Referenced by CGC_Assembly::GetAssemblyUnits(), CGC_AssemblyUnit::IsPrimaryUnit(), CGC_Assembly::IsTargetSetReference(), CIdMapperGCAssembly::x_AddAliasMappings(), CGencollIdMapper::x_FindParentSequence(), CSeq_loc_Mapper::x_InitGCAssembly(), and CGC_Assembly_Parser::x_ParseGCAssembly().

GetPrivate()

const CGC_TypedSeqId_Base::TPrivate & CGC_TypedSeqId_Base::GetPrivate

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 157 of file GC_TypedSeqId_.cpp.

References CGC_TypedSeqId_Base::CheckSelected(), CGC_TypedSeqId_Base::e_Private, and CGC_TypedSeqId_Base::m_object.

Referenced by CSeq_loc_Mapper::x_IsUCSCRandomChr(), and CGC_Assembly_Parser::x_ParseGCSequence().

GetProject_id()

CGC_Project_Base::TProject_id CGC_Project_Base::GetProject_id ( void  ) const

inline

Get the Project_id member data.

Returns

Copy of the member data.

Definition at line 266 of file GC_Project_.hpp.

References CGC_Project_Base::CanGetProject_id(), CGC_Project_Base::m_Project_id, and CSerialObject::ThrowUnassigned().

GetProject_role()

const CGC_Project_Base::TProject_role & CGC_Project_Base::GetProject_role ( void  ) const

inline

Get the Project_role member data.

Returns

Reference to the member data.

Definition at line 212 of file GC_Project_.hpp.

References CGC_Project_Base::CanGetProject_role(), CGC_Project_Base::m_Project_role, and CSerialObject::ThrowUnassigned().

GetProjects() [1/2]

const CGC_AssemblyDesc_Base::TProjects & CGC_AssemblyDesc_Base::GetProjects ( void  ) const

inline

Get the Projects member data.

Returns

Reference to the member data.

Definition at line 910 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_Projects.

GetProjects() [2/2]

const CGC_Genome_Base::TProjects & CGC_Genome_Base::GetProjects ( void  ) const

inline

Get the Projects member data.

Returns

Reference to the member data.

Definition at line 350 of file GC_Genome_.hpp.

References CGC_Genome_Base::m_Projects.

GetPublic()

const CGC_SeqIdAlias_Base::TPublic & CGC_SeqIdAlias_Base::GetPublic ( void  ) const

inline

Get the Public member data.

Returns

Reference to the member data.

Definition at line 312 of file GC_SeqIdAlias_.hpp.

References CGC_SeqIdAlias_Base::m_Public, and CGC_SeqIdAlias_Base::ResetPublic().

Referenced by CIdMapperGCAssembly::x_AddAliasMappings(), CGC_Assembly_Parser::x_ParseGCSequence(), and CGencollIdMapper::x_RemoveHiddenAccessions().

GetQuery()

const CGC_Assemblies_Base::TQuery & CGC_Assemblies_Base::GetQuery ( void  ) const

inline

Get the Query member data.

Returns

Reference to the member data.

Definition at line 203 of file GC_Assemblies_.hpp.

References CGC_Assemblies_Base::m_Query.

GetRefseq() [1/2]

const CGC_DbTagAlias_Base::TRefseq & CGC_DbTagAlias_Base::GetRefseq ( void  ) const

inline

Get the Refseq member data.

Returns

Reference to the member data.

Definition at line 266 of file GC_DbTagAlias_.hpp.

References CGC_DbTagAlias_Base::CanGetRefseq(), CGC_DbTagAlias_Base::m_Refseq, and CSerialObject::ThrowUnassigned().

GetRefseq() [2/2]

const CGC_TypedSeqId_Base::TRefseq & CGC_TypedSeqId_Base::GetRefseq

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 135 of file GC_TypedSeqId_.cpp.

References CGC_TypedSeqId_Base::CheckSelected(), CGC_TypedSeqId_Base::e_Refseq, and CGC_TypedSeqId_Base::m_object.

Referenced by CSeq_loc_Mapper::x_IsUCSCRandomChr(), and CGC_Assembly_Parser::x_ParseGCSequence().

GetRelease_level()

CGC_AssemblyDesc_Base::TRelease_level CGC_AssemblyDesc_Base::GetRelease_level ( void  ) const

inline

Get the Release_level member data.

Returns

Copy of the member data.

Definition at line 1557 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_Release_level.

GetRelease_status()

CGC_AssemblyDesc_Base::TRelease_status CGC_AssemblyDesc_Base::GetRelease_status ( void  ) const

inline

Get the Release_status member data.

Returns

Copy of the member data.

Definition at line 1318 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::CanGetRelease_status(), CGC_AssemblyDesc_Base::m_Release_status, and CSerialObject::ThrowUnassigned().

GetRelease_type()

CGC_AssemblyDesc_Base::TRelease_type CGC_AssemblyDesc_Base::GetRelease_type ( void  ) const

inline

Get the Release_type member data.

Returns

Copy of the member data.

Definition at line 1271 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::CanGetRelease_type(), CGC_AssemblyDesc_Base::m_Release_type, and CSerialObject::ThrowUnassigned().

GetRoles()

const CGC_Sequence_Base::TRoles & CGC_Sequence_Base::GetRoles ( void  ) const

inline

Get the Roles member data.

Returns

Reference to the member data.

Definition at line 743 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::m_Roles.

Referenced by CTableDataGCAssembly::GetStringValue(), and CGC_Sequence::HasRole().

GetSeq_id()

const CGC_Sequence_Base::TSeq_id & CGC_Sequence_Base::GetSeq_id ( void  ) const

inline

Get the Seq_id member data.

Returns

Reference to the member data.

Definition at line 528 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::m_Seq_id, and CGC_Sequence_Base::ResetSeq_id().

Referenced by CGC_Assembly::CreateIndex(), CTableDataGCAssembly::GetObjectValue(), CTableDataGCAssembly::GetStringValue(), CIdMapperGCAssembly::x_AddAliasMappings(), CGencollIdMapper::x_GetIdFromSeqAndSpec(), CSeq_loc_Mapper::x_InitGCSequence(), CSeq_loc_Mapper::x_IsUCSCRandomChr(), CGencollIdMapper::x_MakeSpecForSeq(), CGC_Assembly_Parser::x_ParseGCSequence(), and CGencollIdMapper::x_RecursiveSeqFix().

GetSeq_id_synonyms()

const CGC_Sequence_Base::TSeq_id_synonyms & CGC_Sequence_Base::GetSeq_id_synonyms ( void  ) const

inline

Get the Seq_id_synonyms member data.

Returns

Reference to the member data.

Definition at line 558 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::m_Seq_id_synonyms.

Referenced by CGC_Assembly::CreateIndex(), CGC_Sequence::GetSubmitterName(), CGC_Sequence::GetSynonymSeq_id(), CIdMapperGCAssembly::x_AddAliasMappings(), CGencollIdMapper::x_CanSeqMeetSpec(), CGencollIdMapper::x_FillChromosomeIds(), CGencollIdMapper::x_GetIdFromSeqAndSpec(), CSeq_loc_Mapper::x_InitGCSequence(), CSeq_loc_Mapper::x_IsUCSCRandomChr(), CGencollIdMapper::x_MakeSpecForSeq(), CGC_Assembly_Parser::x_ParseGCSequence(), CGencollIdMapper::x_RecursiveSeqFix(), and CGencollIdMapper::x_StripPseudoSeq().

GetSeqs() [1/2]

const CGC_GenomicPart_Base::TSeqs & CGC_GenomicPart_Base::GetSeqs

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 152 of file GC_GenomicPart_.cpp.

References CGC_GenomicPart_Base::CheckSelected(), CGC_GenomicPart_Base::e_Seqs, and CGC_GenomicPart_Base::m_object.

GetSeqs() [2/2]

const CGC_TaggedSequences_Base::TSeqs & CGC_TaggedSequences_Base::GetSeqs ( void  ) const

inline

Get the Seqs member data.

Returns

Reference to the member data.

Definition at line 268 of file GC_TaggedSequences_.hpp.

References CGC_TaggedSequences_Base::m_Seqs.

Referenced by CGC_Assembly_Parser::x_ParseGCSequence().

GetSequence()

const CGC_Replicon_Base::TSequence & CGC_Replicon_Base::GetSequence ( void  ) const

inline

Get the Sequence member data.

Returns

Reference to the member data.

Definition at line 559 of file GC_Replicon_.hpp.

References CGC_Replicon_Base::m_Sequence, and CGC_Replicon_Base::ResetSequence().

Referenced by CIdMapperGCAssembly::x_AddAliasMappings(), x_GetMolLocTypeUserObj(), and CGC_Assembly::x_Index().

GetSequences()

const CGC_Sequence_Base::TSequences & CGC_Sequence_Base::GetSequences ( void  ) const

inline

Get the Sequences member data.

Returns

Reference to the member data.

Definition at line 629 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::m_Sequences.

Referenced by CGC_Assembly::CreateIndex(), CIdMapperGCAssembly::x_AddAliasMappings(), CGencollIdMapper::x_CanSeqMeetSpec(), CGC_Sequence::x_GetChildren(), CSeq_loc_Mapper::x_InitGCSequence(), CGencollIdMapper::x_IsParentSequence(), CGC_Assembly_Parser::x_ParseGCSequence(), and CGencollIdMapper::x_RecursiveSeqFix().

GetSet()

const CGC_Replicon_Base::C_Sequence::TSet & CGC_Replicon_Base::C_Sequence::GetSet ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 439 of file GC_Replicon_.hpp.

Referenced by CIdMapperGCAssembly::x_AddAliasMappings(), CSeq_loc_Mapper::x_InitGCAssembly(), and CGC_Assembly_Parser::x_ParseGCAssembly().

GetSet_type()

CGC_AssemblySet_Base::TSet_type CGC_AssemblySet_Base::GetSet_type ( void  ) const

inline

Get the Set_type member data.

Returns

Copy of the member data.

Definition at line 477 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::CanGetSet_type(), CGC_AssemblySet_Base::m_Set_type, and CSerialObject::ThrowUnassigned().

Referenced by CAssemblyObjectLoader::Execute().

GetSimilarity() [1/2]

CGC_DbTagAlias_Base::TSimilarity CGC_DbTagAlias_Base::GetSimilarity ( void  ) const

inline

Get the Similarity member data.

Returns

Copy of the member data.

Definition at line 315 of file GC_DbTagAlias_.hpp.

References CGC_DbTagAlias_Base::CanGetSimilarity(), CGC_DbTagAlias_Base::m_Similarity, and CSerialObject::ThrowUnassigned().

GetSimilarity() [2/2]

CGC_SeqIdAlias_Base::TSimilarity CGC_SeqIdAlias_Base::GetSimilarity ( void  ) const

inline

Get the Similarity member data.

Returns

Copy of the member data.

Definition at line 391 of file GC_SeqIdAlias_.hpp.

References CGC_SeqIdAlias_Base::CanGetSimilarity(), CGC_SeqIdAlias_Base::m_Similarity, and CSerialObject::ThrowUnassigned().

GetSingle()

const CGC_Replicon_Base::C_Sequence::TSingle & CGC_Replicon_Base::C_Sequence::GetSingle

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 103 of file GC_Replicon_.cpp.

Referenced by CIdMapperGCAssembly::x_AddAliasMappings(), x_GetMolLocTypeUserObj(), CSeq_loc_Mapper::x_InitGCAssembly(), and CGC_Assembly_Parser::x_ParseGCAssembly().

GetState()

CGC_TaggedSequences_Base::TState CGC_TaggedSequences_Base::GetState ( void  ) const

inline

Get the State member data.

Returns

Copy of the member data.

Definition at line 228 of file GC_TaggedSequences_.hpp.

References CGC_TaggedSequences_Base::CanGetState(), CGC_TaggedSequences_Base::m_State, and CSerialObject::ThrowUnassigned().

GetStats() [1/3]

const CGC_AssemblySet_Base::TStats & CGC_AssemblySet_Base::GetStats ( void  ) const

inline

Get the Stats member data.

Returns

Reference to the member data.

Definition at line 649 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::CanGetStats(), CGC_AssemblySet_Base::m_Stats, and CSerialObject::ThrowUnassigned().

GetStats() [2/3]

const CGC_AssemblyUnit_Base::TStats & CGC_AssemblyUnit_Base::GetStats ( void  ) const

inline

Get the Stats member data.

Returns

Reference to the member data.

Definition at line 610 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::CanGetStats(), CGC_AssemblyUnit_Base::m_Stats, and CSerialObject::ThrowUnassigned().

GetStats() [3/3]

const CGC_Sequence_Base::TStats & CGC_Sequence_Base::GetStats ( void  ) const

inline

Get the Stats member data.

Returns

Reference to the member data.

Definition at line 675 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::CanGetStats(), CGC_Sequence_Base::m_Stats, and CSerialObject::ThrowUnassigned().

Referenced by CGC_Sequence::x_GetLength().

GetStats_category()

CGC_Scaf_stats_Base::TStats_category CGC_Scaf_stats_Base::GetStats_category ( void  ) const

inline

Get the Stats_category member data.

Returns

Copy of the member data.

Definition at line 294 of file GC_Scaf_stats_.hpp.

References CGC_Scaf_stats_Base::CanGetStats_category(), CGC_Scaf_stats_Base::m_Stats_category, and CSerialObject::ThrowUnassigned().

GetStructure()

const CGC_Sequence_Base::TStructure & CGC_Sequence_Base::GetStructure ( void  ) const

inline

Get the Structure member data.

Returns

Reference to the member data.

Definition at line 654 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::CanGetStructure(), CGC_Sequence_Base::m_Structure, and CSerialObject::ThrowUnassigned().

Referenced by CIdMapperGCAssembly::x_AddAliasMappings(), CGC_Assembly_Parser::x_AddBioseq(), CSeq_loc_Mapper::x_InitGCSequence(), CGC_Assembly_Parser::x_ParseGCSequence(), and CGencollIdMapper::x_RecursiveSeqFix().

GetSubmitter_date()

const CGC_AssemblyDesc_Base::TSubmitter_date & CGC_AssemblyDesc_Base::GetSubmitter_date ( void  ) const

inline

Get the Submitter_date member data.

Returns

Reference to the member data.

Definition at line 1408 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::CanGetSubmitter_date(), CGC_AssemblyDesc_Base::m_Submitter_date, and CSerialObject::ThrowUnassigned().

GetSubmitter_name()

const CGC_AssemblyDesc_Base::TSubmitter_name & CGC_AssemblyDesc_Base::GetSubmitter_name ( void  ) const

inline

Get the Submitter_name member data.

Returns

Reference to the member data.

Definition at line 982 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::CanGetSubmitter_name(), CGC_AssemblyDesc_Base::m_Submitter_name, and CSerialObject::ThrowUnassigned().

GetSubmitter_organization()

const CGC_AssemblyDesc_Base::TSubmitter_organization & CGC_AssemblyDesc_Base::GetSubmitter_organization ( void  ) const

inline

Get the Submitter_organization member data.

Returns

Reference to the member data.

Definition at line 1594 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::CanGetSubmitter_organization(), CGC_AssemblyDesc_Base::m_Submitter_organization, and CSerialObject::ThrowUnassigned().

GetSynonyms()

const CGC_AssemblyDesc_Base::TSynonyms & CGC_AssemblyDesc_Base::GetSynonyms ( void  ) const

inline

Get the Synonyms member data.

Returns

Reference to the member data.

Definition at line 1383 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_Synonyms.

GetUnaligned_scaf()

const CGC_SequenceStats_Base::TUnaligned_scaf & CGC_SequenceStats_Base::GetUnaligned_scaf ( void  ) const

inline

Get the Unaligned_scaf member data.

Returns

Reference to the member data.

Definition at line 469 of file GC_SequenceStats_.hpp.

References CGC_SequenceStats_Base::m_Unaligned_scaf.

GetUnit()

const CGC_Assembly_Base::TUnit & CGC_Assembly_Base::GetUnit

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 102 of file GC_Assembly_.cpp.

References CGC_Assembly_Base::CheckSelected(), CGC_Assembly_Base::e_Unit, and CGC_Assembly_Base::m_object.

Referenced by CAssemblyObjectLoader::Execute(), GetAssebmlyDesc(), CGC_Assembly::GetAssemblyUnits(), CGC_Assembly::GetDesc(), CGC_Assembly::GetDisplayName(), CGC_Assembly::GetFileSafeDisplayName(), CGC_Assembly::GetName(), CGC_Assembly::GetTaxId(), CGC_Assembly::GetUnitClass(), CGC_Assembly::IsGenBank(), CGC_AssemblyUnit::IsPrimaryUnit(), CGC_Assembly::IsRefSeq(), CGC_Assembly::IsTargetSetReference(), s_Extract(), CIdMapperGCAssembly::x_AddAliasMappings(), CGC_Assembly::x_GetId(), CGC_Assembly::x_Index(), CSeq_loc_Mapper::x_InitGCAssembly(), and CGC_Assembly_Parser::x_ParseGCAssembly().

GetUnordered_scaf()

const CGC_SequenceStats_Base::TUnordered_scaf & CGC_SequenceStats_Base::GetUnordered_scaf ( void  ) const

inline

Get the Unordered_scaf member data.

Returns

Reference to the member data.

Definition at line 394 of file GC_SequenceStats_.hpp.

References CGC_SequenceStats_Base::m_Unordered_scaf.

GetUnplaced_scaf()

const CGC_SequenceStats_Base::TUnplaced_scaf & CGC_SequenceStats_Base::GetUnplaced_scaf ( void  ) const

inline

Get the Unplaced_scaf member data.

Returns

Reference to the member data.

Definition at line 419 of file GC_SequenceStats_.hpp.

References CGC_SequenceStats_Base::m_Unplaced_scaf.

GetUnplaced_stats()

const CGC_AssemblyUnit_Base::TUnplaced_stats & CGC_AssemblyUnit_Base::GetUnplaced_stats ( void  ) const

inline

Get the Unplaced_stats member data.

Returns

Reference to the member data.

Definition at line 631 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::m_Unplaced_stats.

GetUnplaced_unlocalized_stats()

const CGC_AssemblyUnit_Base::TUnplaced_unlocalized_stats & CGC_AssemblyUnit_Base::GetUnplaced_unlocalized_stats ( void  ) const

inline

Get the Unplaced_unlocalized_stats member data.

Returns

Reference to the member data.

Definition at line 656 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::m_Unplaced_unlocalized_stats.

GetValue() [1/2]

const CGC_Query_Base::TValue & CGC_Query_Base::GetValue ( void  ) const

inline

Get the Value member data.

Returns

Reference to the member data.

Definition at line 263 of file GC_Query_.hpp.

References CGC_Query_Base::CanGetValue(), CGC_Query_Base::m_Value, and CSerialObject::ThrowUnassigned().

GetValue() [2/2]

CGC_Scaf_stats_Base::TValue CGC_Scaf_stats_Base::GetValue ( void  ) const

inline

Get the Value member data.

Returns

Copy of the member data.

Definition at line 341 of file GC_Scaf_stats_.hpp.

References CGC_Scaf_stats_Base::CanGetValue(), CGC_Scaf_stats_Base::m_Value, and CSerialObject::ThrowUnassigned().

GetWgs_acc_number()

CGC_AssemblyDesc_Base::TWgs_acc_number CGC_AssemblyDesc_Base::GetWgs_acc_number ( void  ) const

inline

Get the Wgs_acc_number member data.

Returns

Copy of the member data.

Definition at line 1224 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::CanGetWgs_acc_number(), CGC_AssemblyDesc_Base::m_Wgs_acc_number, and CSerialObject::ThrowUnassigned().

GetWgs_acc_prefix()

const CGC_AssemblyDesc_Base::TWgs_acc_prefix & CGC_AssemblyDesc_Base::GetWgs_acc_prefix ( void  ) const

inline

Get the Wgs_acc_prefix member data.

Returns

Reference to the member data.

Definition at line 1170 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::CanGetWgs_acc_prefix(), CGC_AssemblyDesc_Base::m_Wgs_acc_prefix, and CSerialObject::ThrowUnassigned().

IsAssembly()

bool CGC_GenomicPart_Base::IsAssembly ( void  ) const

inline

Check if variant Assembly is selected.

Assembly type is defined as 'typedef CGC_Assembly TAssembly'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 286 of file GC_GenomicPart_.hpp.

References CGC_GenomicPart_Base::e_Assembly, and CGC_GenomicPart_Base::m_choice.

IsAssembly_set()

bool CGC_Assembly_Base::IsAssembly_set ( void  ) const

inline

Check if variant Assembly_set is selected.

Assembly_set type is defined as 'typedef CGC_AssemblySet TAssembly_set'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 266 of file GC_Assembly_.hpp.

References CGC_Assembly_Base::e_Assembly_set, and CGC_Assembly_Base::m_choice.

Referenced by CGC_Assembly::CreateHierarchy(), CAssemblyObjectLoader::Execute(), GetAssebmlyDesc(), CGC_Assembly::GetDesc(), CGC_Assembly::GetDisplayName(), CGC_Assembly::GetFileSafeDisplayName(), CGC_Assembly::GetFullAssemblies(), CGC_Assembly::GetName(), CGC_Assembly::GetTaxId(), CGC_Assembly::IsGenBank(), CGC_Assembly::IsRefSeq(), CGC_Assembly::IsTargetSetReference(), CIdMapperGCAssembly::x_AddAliasMappings(), CGC_Assembly::x_GetId(), CGC_Assembly::x_Index(), CSeq_loc_Mapper::x_InitGCAssembly(), and CGC_Assembly_Parser::x_ParseGCAssembly().

IsExternal()

bool CGC_TypedSeqId_Base::IsExternal ( void  ) const

inline

Check if variant External is selected.

External type is defined as 'typedef CGC_External_Seqid TExternal'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 332 of file GC_TypedSeqId_.hpp.

References CGC_TypedSeqId_Base::e_External, and CGC_TypedSeqId_Base::m_choice.

IsGenbank()

bool CGC_TypedSeqId_Base::IsGenbank ( void  ) const

inline

Check if variant Genbank is selected.

Genbank type is defined as 'typedef CGC_SeqIdAlias TGenbank'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 314 of file GC_TypedSeqId_.hpp.

References CGC_TypedSeqId_Base::e_Genbank, and CGC_TypedSeqId_Base::m_choice.

Referenced by CGencollIdMapper::x_RemoveHiddenAccessions().

IsMol()

bool CGC_GenomicPart_Base::IsMol ( void  ) const

inline

Check if variant Mol is selected.

Mol type is defined as 'typedef CGC_Replicon TMol'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 292 of file GC_GenomicPart_.hpp.

References CGC_GenomicPart_Base::e_Mol, and CGC_GenomicPart_Base::m_choice.

IsPrivate()

bool CGC_TypedSeqId_Base::IsPrivate ( void  ) const

inline

Check if variant Private is selected.

Private type is defined as 'typedef CSeq_id TPrivate'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 326 of file GC_TypedSeqId_.hpp.

References CGC_TypedSeqId_Base::e_Private, and CGC_TypedSeqId_Base::m_choice.

IsRefseq()

bool CGC_TypedSeqId_Base::IsRefseq ( void  ) const

inline

Check if variant Refseq is selected.

Refseq type is defined as 'typedef CGC_SeqIdAlias TRefseq'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 320 of file GC_TypedSeqId_.hpp.

References CGC_TypedSeqId_Base::e_Refseq, and CGC_TypedSeqId_Base::m_choice.

Referenced by CGencollIdMapper::x_RemoveHiddenAccessions().

IsSeqs()

bool CGC_GenomicPart_Base::IsSeqs ( void  ) const

inline

Check if variant Seqs is selected.

Seqs type is defined as 'typedef CGC_Sequence TSeqs'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 298 of file GC_GenomicPart_.hpp.

References CGC_GenomicPart_Base::e_Seqs, and CGC_GenomicPart_Base::m_choice.

IsSet()

bool CGC_Replicon_Base::C_Sequence::IsSet ( void  ) const

inline

Check if variant Set is selected.

Set type is defined as 'typedef list< CRef< CGC_Sequence > > TSet'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 433 of file GC_Replicon_.hpp.

IsSetAligned_scaf()

bool CGC_SequenceStats_Base::IsSetAligned_scaf ( void  ) const

inline

aligned at full assembly level Check if a value has been assigned to Aligned_scaf data member.

Data member Aligned_scaf is optional; its type is defined as 'typedef list< CRef< CGC_Scaf_stats > > TAligned_scaf'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 432 of file GC_SequenceStats_.hpp.

References CGC_SequenceStats_Base::m_set_State.

IsSetAll_scaf()

bool CGC_SequenceStats_Base::IsSetAll_scaf ( void  ) const

inline

Check if a value has been assigned to All_scaf data member.

Data member All_scaf is mandatory; its type is defined as 'typedef list< CRef< CGC_Scaf_stats > > TAll_scaf'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 332 of file GC_SequenceStats_.hpp.

References CGC_SequenceStats_Base::m_set_State.

IsSetAnnot() [1/2]

bool CGC_AssemblyDesc_Base::IsSetAnnot ( void  ) const

inline

in alt-loci units - contain alignment of this sequence to the primary unit Check if a value has been assigned to Annot data member.

Data member Annot is optional; its type is defined as 'typedef list< CRef< CSeq_annot > > TAnnot'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1346 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_set_State.

Referenced by CGC_Assembly_Parser::x_CopyData().

IsSetAnnot() [2/2]

bool CGC_Sequence_Base::IsSetAnnot ( void  ) const

inline

Feature annotation; Contains Pseudo Autosomal regions on chromosomes and scaffolds in the following format: Id = <ID of PAR (ex:"PAR#1")> Desc (set of Annot-descr) Name: "pseudo autosomal region" Region (seq-loc): int (seq-interval) Id: <GI of chromosome> From: <start-position of region> To : <end-position of region> Data: locs (set of seq-loc): List of int (seq-interval): Id: GI of scaffold From/to: position on scaffold that belongs to this PAR region.

<and repeat this for additional scaffolds on same PAR region>

in alt-loci units - contain alignment of this sequence to the primary unit Check if a value has been assigned to Annot data member.

Data member Annot is optional; its type is defined as 'typedef list< CRef< CSeq_annot > > TAnnot'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 592 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::m_set_State.

Referenced by CGC_Assembly_Parser::x_ParseGCSequence().

IsSetAssemblies()

bool CGC_Assemblies_Base::IsSetAssemblies ( void  ) const

inline

Check if a value has been assigned to Assemblies data member.

Data member Assemblies is mandatory; its type is defined as 'typedef list< CRef< CGC_Assembly > > TAssemblies'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 216 of file GC_Assemblies_.hpp.

References CGC_Assemblies_Base::m_set_State.

IsSetChr_names()

bool CGC_Genome_Base::IsSetChr_names ( void  ) const

inline

official list of chromosome names this should be the complete expected set of chromosomes regardless of whether they are represented in *any* genomic part Check if a value has been assigned to Chr_names data member.

Data member Chr_names is optional; its type is defined as 'typedef list< string > TChr_names'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 384 of file GC_Genome_.hpp.

References CGC_Genome_Base::m_set_State.

IsSetClass() [1/2]

bool CGC_AssemblySet_Base::IsSetClass ( void  ) const

inline

Check if a value has been assigned to Class data member.

Data member Class is mandatory; its type is defined as 'typedef int TClass'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 505 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::m_set_State.

Referenced by CGC_AssemblySet_Base::CanGetClass(), and CGC_AssemblySet_Base::SetClass().

IsSetClass() [2/2]

bool CGC_AssemblyUnit_Base::IsSetClass ( void  ) const

inline

Check if a value has been assigned to Class data member.

Data member Class is mandatory; its type is defined as 'typedef int TClass'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 471 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::m_set_State.

Referenced by CGC_AssemblyUnit_Base::CanGetClass(), and CGC_AssemblyUnit_Base::SetClass().

IsSetCoverage()

bool CGC_AssemblyDesc_Base::IsSetCoverage ( void  ) const

inline

level of coverage for this assembly **NOTE: not set = not known!! Check if a value has been assigned to Coverage data member.

Data member Coverage is optional; its type is defined as 'typedef double TCoverage'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1485 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_set_State.

Referenced by CGC_AssemblyDesc_Base::CanGetCoverage(), and CGC_AssemblyDesc_Base::SetCoverage().

IsSetDesc() [1/2]

bool CGC_AssemblySet_Base::IsSetDesc ( void  ) const

inline

descriptors live in a shared data block Check if a value has been assigned to Desc data member.

Data member Desc is mandatory; its type is defined as 'typedef CGC_AssemblyDesc TDesc'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 552 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::m_Desc.

Referenced by GetAssebmlyDesc(), and CGC_Assembly_Parser::x_ParseGCAssembly().

IsSetDesc() [2/2]

bool CGC_AssemblyUnit_Base::IsSetDesc ( void  ) const

inline

descriptors live in a shared data block Check if a value has been assigned to Desc data member.

Data member Desc is mandatory; its type is defined as 'typedef CGC_AssemblyDesc TDesc'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 518 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::m_Desc.

Referenced by GetAssebmlyDesc(), and CGC_Assembly_Parser::x_ParseGCAssembly().

IsSetDescr() [1/3]

bool CGC_AssemblyDesc_Base::IsSetDescr ( void  ) const

inline

Various attributes assigned at this level: biosrc, comments, publications...

Special user-objects: Internal identifiers (GCOL-1178): type str ="gencoll-misc" data : 2 user fields : label str "asm-name" str <contents of asm_name field> label str "asm-id" int <contents of asm_id field> ftp-sites: type str ="ftp-sites" data : one or 2 fields, depending if both GB and RS have ftp-sites label str : "genbank" or "refseq" str : path to ftp-site diffs between GB / RS assemblies: type str "diff-from-synonym", data label id <incrementing int> str Check if a value has been assigned to Descr data member.

Data member Descr is optional; its type is defined as 'typedef CSeq_descr TDescr'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1417 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_Descr.

Referenced by CGC_AssemblyDesc_Base::CanGetDescr(), and CGC_Assembly_Parser::x_CopyData().

IsSetDescr() [2/3]

bool CGC_Genome_Base::IsSetDescr ( void  ) const

inline

Various attributes assigned at this level: biosrc, comments, publications...

Check if a value has been assigned to Descr data member.

Data member Descr is optional; its type is defined as 'typedef CSeq_descr TDescr'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 363 of file GC_Genome_.hpp.

References CGC_Genome_Base::m_Descr.

Referenced by CGC_Genome_Base::CanGetDescr().

IsSetDescr() [3/3]

bool CGC_Sequence_Base::IsSetDescr ( void  ) const

inline

Various attributes assigned at this level: biosrc, comments, publications...

Check if a value has been assigned to Descr data member.

Data member Descr is optional; its type is defined as 'typedef CSeq_descr TDescr'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 571 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::m_Descr.

Referenced by CGC_Sequence_Base::CanGetDescr(), x_GetMolLocTypeUserObj(), and CGC_Assembly_Parser::x_ParseGCSequence().

IsSetDisplay_name()

bool CGC_AssemblyDesc_Base::IsSetDisplay_name ( void  ) const

inline

Check if a value has been assigned to Display_name data member.

Data member Display_name is optional; its type is defined as 'typedef string TDisplay_name'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1017 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_set_State.

Referenced by CGC_AssemblyDesc_Base::CanGetDisplay_name(), and CGC_AssemblyDesc_Base::SetDisplay_name().

IsSetExternal()

bool CGC_External_Seqid_Base::IsSetExternal ( void  ) const

inline

Check if a value has been assigned to External data member.

Data member External is mandatory; its type is defined as 'typedef string TExternal'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 203 of file GC_External_Seqid_.hpp.

References CGC_External_Seqid_Base::m_set_State.

Referenced by CGC_External_Seqid_Base::CanGetExternal(), and CGC_External_Seqid_Base::SetExternal().

IsSetFilesafe_name()

bool CGC_AssemblyDesc_Base::IsSetFilesafe_name ( void  ) const

inline

Check if a value has been assigned to Filesafe_name data member.

Data member Filesafe_name is optional; its type is defined as 'typedef string TFilesafe_name'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1111 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_set_State.

Referenced by CGC_AssemblyDesc_Base::CanGetFilesafe_name(), CGC_Assembly::GetFileSafeName(), CGC_AssemblyUnit::GetFileSafeName(), and CGC_AssemblyDesc_Base::SetFilesafe_name().

IsSetGenbank()

bool CGC_DbTagAlias_Base::IsSetGenbank ( void  ) const

inline

the genbank assembly release-id Check if a value has been assigned to Genbank data member.

Data member Genbank is optional; its type is defined as 'typedef CDbtag TGenbank'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 275 of file GC_DbTagAlias_.hpp.

References CGC_DbTagAlias_Base::m_Genbank.

Referenced by CGC_DbTagAlias_Base::CanGetGenbank().

IsSetGi()

bool CGC_SeqIdAlias_Base::IsSetGi ( void  ) const

inline

optional since not all sequences have GIs Similarity: relationship between this synonym to main seqid of the GC-Sequence Can be expanded to multiple level of identicality can use bitmap to flag ambiguity between different levels Check if a value has been assigned to Gi data member.

Data member Gi is optional; its type is defined as 'typedef CSeq_id TGi'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 351 of file GC_SeqIdAlias_.hpp.

References CGC_SeqIdAlias_Base::m_Gi.

Referenced by CGC_SeqIdAlias_Base::CanGetGi(), CSeq_loc_Mapper::x_IsUCSCRandomChr(), and CGC_Assembly_Parser::x_ParseGCSequence().

IsSetGpipe()

bool CGC_SeqIdAlias_Base::IsSetGpipe ( void  ) const

inline

the gpipe accession Check if a value has been assigned to Gpipe data member.

Data member Gpipe is optional; its type is defined as 'typedef CSeq_id TGpipe'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 330 of file GC_SeqIdAlias_.hpp.

References CGC_SeqIdAlias_Base::m_Gpipe.

Referenced by CGC_SeqIdAlias_Base::CanGetGpipe(), CIdMapperGCAssembly::x_AddAliasMappings(), and CGC_Assembly_Parser::x_ParseGCSequence().

IsSetId() [1/4]

bool CGC_AssemblySet_Base::IsSetId ( void  ) const

inline

The identifier of this assembly examples: GC internal id, Assembly-accession.version Types of DbTags used: db "GenColl", tag id <assembly-release-id> db "GenColl", tag str <assembly-accession.version> db "AGP", tag id <agp-sumbission-id> db "GenColl_Chain", tag id <assembly-chain-id> db "UCSC_name", tag str <UCSC identifier for assembly> db "Ensembl_name",tag str <Ensembl identifier for assembly> Check if a value has been assigned to Id data member.

Data member Id is mandatory; its type is defined as 'typedef list< CRef< CDbtag > > TId'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 433 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::m_set_State.

IsSetId() [2/4]

bool CGC_AssemblyUnit_Base::IsSetId ( void  ) const

inline

The identifier of this assembly Contains: GenColl internal id, GenColl accession.version, AGP id, UCSC name, Ensembl name Types of DbTags used: db "GenColl", tag id <assembly-release-id> db "GenColl", tag str <assembly-accession.version> db "AGP", tag id <agp-sumbission-id> db "GenColl_Chain", tag id <assembly-chain-id> "Ensembl_name" and "UCSC_name" will not appear in the Unit level since these organizations do not define assembly-units.

Check if a value has been assigned to Id data member.

Data member Id is mandatory; its type is defined as 'typedef list< CRef< CDbtag > > TId'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 446 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::m_set_State.

IsSetId() [3/4]

bool CGC_External_Seqid_Base::IsSetId ( void  ) const

inline

Check if a value has been assigned to Id data member.

Data member Id is mandatory; its type is defined as 'typedef CSeq_id TId'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 250 of file GC_External_Seqid_.hpp.

References CGC_External_Seqid_Base::m_Id.

IsSetId() [4/4]

bool CGC_Genome_Base::IsSetId ( void  ) const

inline

Gencoll identifier for this genome Check if a value has been assigned to Id data member.

Data member Id is mandatory; its type is defined as 'typedef list< CRef< CDbtag > > TId'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 313 of file GC_Genome_.hpp.

References CGC_Genome_Base::m_set_State.

IsSetLocal_name()

bool CGC_Replicon_Base::IsSetLocal_name ( void  ) const

inline

If the chromosome has a different name in this assembly.

Check if a value has been assigned to Local_name data member.

Data member Local_name is optional; its type is defined as 'typedef string TLocal_name'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 500 of file GC_Replicon_.hpp.

References CGC_Replicon_Base::m_set_State.

Referenced by CGC_Replicon_Base::CanGetLocal_name(), and CGC_Replicon_Base::SetLocal_name().

IsSetLong_name()

bool CGC_AssemblyDesc_Base::IsSetLong_name ( void  ) const

inline

Check if a value has been assigned to Long_name data member.

Data member Long_name is optional; its type is defined as 'typedef CStringUTF8 TLong_name'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1064 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_set_State.

Referenced by CGC_AssemblyDesc_Base::CanGetLong_name(), CGCAsssemblyHandler::GetLabel(), and CGC_AssemblyDesc_Base::SetLong_name().

IsSetMols()

bool CGC_AssemblyUnit_Base::IsSetMols ( void  ) const

inline

collections of molecules for this assembly Check if a value has been assigned to Mols data member.

Data member Mols is optional; its type is defined as 'typedef list< CRef< CGC_Replicon > > TMols'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 548 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::m_set_State.

Referenced by CIdMapperGCAssembly::x_AddAliasMappings(), CSeq_loc_Mapper::x_InitGCAssembly(), and CGC_Assembly_Parser::x_ParseGCAssembly().

IsSetMore_assemblies()

bool CGC_AssemblySet_Base::IsSetMore_assemblies ( void  ) const

inline

Check if a value has been assigned to More_assemblies data member.

Data member More_assemblies is optional; its type is defined as 'typedef list< CRef< CGC_Assembly > > TMore_assemblies'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 612 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::m_set_State.

Referenced by CIdMapperGCAssembly::x_AddAliasMappings(), CSeq_loc_Mapper::x_InitGCAssembly(), and CGC_Assembly_Parser::x_ParseGCAssembly().

IsSetName() [1/2]

bool CGC_AssemblyDesc_Base::IsSetName ( void  ) const

inline

Names of the assembly Check if a value has been assigned to Name data member.

Data member Name is optional; its type is defined as 'typedef string TName'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 923 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_set_State.

Referenced by CGC_AssemblyDesc_Base::CanGetName(), CGCAsssemblyHandler::GetLabel(), and CGC_AssemblyDesc_Base::SetName().

IsSetName() [2/2]

bool CGC_Replicon_Base::IsSetName ( void  ) const

inline

name for this molecule the official name, Check if a value has been assigned to Name data member.

Data member Name is optional; its type is defined as 'typedef string TName'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 453 of file GC_Replicon_.hpp.

References CGC_Replicon_Base::m_set_State.

Referenced by CGC_Replicon_Base::CanGetName(), and CGC_Replicon_Base::SetName().

IsSetOrdered_scaf()

bool CGC_SequenceStats_Base::IsSetOrdered_scaf ( void  ) const

inline

Check if a value has been assigned to Ordered_scaf data member.

Data member Ordered_scaf is mandatory; its type is defined as 'typedef list< CRef< CGC_Scaf_stats > > TOrdered_scaf'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 357 of file GC_SequenceStats_.hpp.

References CGC_SequenceStats_Base::m_set_State.

IsSetOther_sequences()

bool CGC_AssemblyUnit_Base::IsSetOther_sequences ( void  ) const

inline

On primary assembly-unit: here will be the unplaced sequences On alt-loci: list of sequences aligned/unaligned to primary unit Check if a value has been assigned to Other_sequences data member.

Data member Other_sequences is optional; its type is defined as 'typedef list< CRef< CGC_TaggedSequences > > TOther_sequences'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 573 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::m_set_State.

Referenced by CIdMapperGCAssembly::x_AddAliasMappings(), CSeq_loc_Mapper::x_InitGCAssembly(), and CGC_Assembly_Parser::x_ParseGCAssembly().

IsSetParam()

bool CGC_Query_Base::IsSetParam ( void  ) const

inline

Check if a value has been assigned to Param data member.

Data member Param is mandatory; its type is defined as 'typedef string TParam'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 204 of file GC_Query_.hpp.

References CGC_Query_Base::m_set_State.

Referenced by CGC_Query_Base::CanGetParam(), and CGC_Query_Base::SetParam().

IsSetPartial()

bool CGC_AssemblyDesc_Base::IsSetPartial ( void  ) const

inline

flag: is this assembly partial? **NOTE: not set = not known!! Check if a value has been assigned to Partial data member.

Data member Partial is optional; its type is defined as 'typedef bool TPartial'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1438 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_set_State.

Referenced by CGC_AssemblyDesc_Base::CanGetPartial(), and CGC_AssemblyDesc_Base::SetPartial().

IsSetParts()

bool CGC_Genome_Base::IsSetParts ( void  ) const

inline

the bits that make up this genome this preserves the expected display order Check if a value has been assigned to Parts data member.

Data member Parts is mandatory; its type is defined as 'typedef list< CRef< CGC_GenomicPart > > TParts'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 409 of file GC_Genome_.hpp.

References CGC_Genome_Base::m_set_State.

IsSetPatch_type()

bool CGC_Sequence_Base::IsSetPatch_type ( void  ) const

inline

Check if a value has been assigned to Patch_type data member.

Data member Patch_type is optional; its type is defined as 'typedef int TPatch_type'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 684 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::m_set_State.

Referenced by CGC_Sequence_Base::CanGetPatch_type(), CTableDataGCAssembly::GetStringValue(), and CGC_Sequence_Base::SetPatch_type().

IsSetPrimary_assembly()

bool CGC_AssemblySet_Base::IsSetPrimary_assembly ( void  ) const

inline

we contain hierarchically a set of assemblies Check if a value has been assigned to Primary_assembly data member.

Data member Primary_assembly is mandatory; its type is defined as 'typedef CGC_Assembly TPrimary_assembly'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 582 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::m_Primary_assembly.

IsSetProject_id()

bool CGC_Project_Base::IsSetProject_id ( void  ) const

inline

Check if a value has been assigned to Project_id data member.

Data member Project_id is mandatory; its type is defined as 'typedef int TProject_id'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 247 of file GC_Project_.hpp.

References CGC_Project_Base::m_set_State.

Referenced by CGC_Project_Base::CanGetProject_id(), and CGC_Project_Base::SetProject_id().

IsSetProject_role()

bool CGC_Project_Base::IsSetProject_role ( void  ) const

inline

Genbank / Refseq Check if a value has been assigned to Project_role data member.

Data member Project_role is mandatory; its type is defined as 'typedef string TProject_role'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 200 of file GC_Project_.hpp.

References CGC_Project_Base::m_set_State.

Referenced by CGC_Project_Base::CanGetProject_role(), and CGC_Project_Base::SetProject_role().

IsSetProjects() [1/2]

bool CGC_AssemblyDesc_Base::IsSetProjects ( void  ) const

inline

project ID for this genome this is the ID for this asssembly and may reflect the submitter/source Check if a value has been assigned to Projects data member.

Data member Projects is optional; its type is defined as 'typedef list< CRef< CGC_Project > > TProjects'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 898 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_set_State.

IsSetProjects() [2/2]

bool CGC_Genome_Base::IsSetProjects ( void  ) const

inline

project ID for this genome this is the ID for this asssembly and may reflect the submitter/source Check if a value has been assigned to Projects data member.

Data member Projects is optional; its type is defined as 'typedef list< CRef< CGC_Project > > TProjects'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 338 of file GC_Genome_.hpp.

References CGC_Genome_Base::m_set_State.

IsSetPublic()

bool CGC_SeqIdAlias_Base::IsSetPublic ( void  ) const

inline

the refseq/genbank accession Check if a value has been assigned to Public data member.

Data member Public is mandatory; its type is defined as 'typedef CSeq_id TPublic'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 300 of file GC_SeqIdAlias_.hpp.

References CGC_SeqIdAlias_Base::m_Public.

IsSetQuery()

bool CGC_Assemblies_Base::IsSetQuery ( void  ) const

inline

Check if a value has been assigned to Query data member.

Data member Query is optional; its type is defined as 'typedef list< CRef< CGC_Query > > TQuery'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 191 of file GC_Assemblies_.hpp.

References CGC_Assemblies_Base::m_set_State.

IsSetRefseq()

bool CGC_DbTagAlias_Base::IsSetRefseq ( void  ) const

inline

the refseq assembly release-id Check if a value has been assigned to Refseq data member.

Data member Refseq is optional; its type is defined as 'typedef CDbtag TRefseq'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 254 of file GC_DbTagAlias_.hpp.

References CGC_DbTagAlias_Base::m_Refseq.

Referenced by CGC_DbTagAlias_Base::CanGetRefseq().

IsSetRelease_level()

bool CGC_AssemblyDesc_Base::IsSetRelease_level ( void  ) const

inline

Check if a value has been assigned to Release_level data member.

Data member Release_level is optional with default eRelease_level_major; its type is defined as 'typedef int TRelease_level'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1532 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_set_State.

Referenced by CGC_AssemblyDesc_Base::SetRelease_level().

IsSetRelease_status()

bool CGC_AssemblyDesc_Base::IsSetRelease_status ( void  ) const

inline

Check if a value has been assigned to Release_status data member.

Data member Release_status is optional; its type is defined as 'typedef int TRelease_status'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1299 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_set_State.

Referenced by CGC_AssemblyDesc_Base::CanGetRelease_status(), and CGC_AssemblyDesc_Base::SetRelease_status().

IsSetRelease_type()

bool CGC_AssemblyDesc_Base::IsSetRelease_type ( void  ) const

inline

Check if a value has been assigned to Release_type data member.

Data member Release_type is optional; its type is defined as 'typedef int TRelease_type'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1252 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_set_State.

Referenced by CGC_AssemblyDesc_Base::CanGetRelease_type(), and CGC_AssemblyDesc_Base::SetRelease_type().

IsSetRoles()

bool CGC_Sequence_Base::IsSetRoles ( void  ) const

inline

sequence-role: what role(s) does this sequence have in the assembly Check if a value has been assigned to Roles data member.

Data member Roles is optional; its type is defined as 'typedef list< int > TRoles'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 731 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::m_set_State.

IsSetSeq_id()

bool CGC_Sequence_Base::IsSetSeq_id ( void  ) const

inline

identifiers are: Local / gpipe-satellite / genbank / refseq local is merely local name (or maybe with WGS accession??) others are accession/ver/gi

Main identifier: we will report the one that matches the context of who asked. Check if a value has been assigned to Seq_id data member.

Data member Seq_id is mandatory; its type is defined as 'typedef CSeq_id TSeq_id'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 516 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::m_Seq_id.

IsSetSeq_id_synonyms()

bool CGC_Sequence_Base::IsSetSeq_id_synonyms ( void  ) const

inline

Other known identifiers: Local / gpipe-satellite / genbank / refseq Check if a value has been assigned to Seq_id_synonyms data member.

Data member Seq_id_synonyms is optional; its type is defined as 'typedef list< CRef< CGC_TypedSeqId > > TSeq_id_synonyms'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 546 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::m_set_State.

Referenced by CGC_Assembly::CreateIndex(), CGC_Sequence::GetSubmitterName(), CGC_Sequence::GetSynonymSeq_id(), CIdMapperGCAssembly::x_AddAliasMappings(), CSeq_loc_Mapper::x_InitGCSequence(), and CGC_Assembly_Parser::x_ParseGCSequence().

IsSetSeqs()

bool CGC_TaggedSequences_Base::IsSetSeqs ( void  ) const

inline

Check if a value has been assigned to Seqs data member.

Data member Seqs is mandatory; its type is defined as 'typedef list< CRef< CGC_Sequence > > TSeqs'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 256 of file GC_TaggedSequences_.hpp.

References CGC_TaggedSequences_Base::m_set_State.

IsSetSequence()

bool CGC_Replicon_Base::IsSetSequence ( void  ) const

inline

Check if a value has been assigned to Sequence data member.

Data member Sequence is mandatory; its type is defined as 'typedef C_Sequence TSequence'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 547 of file GC_Replicon_.hpp.

References CGC_Replicon_Base::m_Sequence.

IsSetSequences()

bool CGC_Sequence_Base::IsSetSequences ( void  ) const

inline

placed: populated both on chromosome and scaffold levels unlocalized: populated on chromosome level Check if a value has been assigned to Sequences data member.

Data member Sequences is optional; its type is defined as 'typedef list< CRef< CGC_TaggedSequences > > TSequences'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 617 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::m_set_State.

Referenced by CGC_Assembly::CreateIndex(), CIdMapperGCAssembly::x_AddAliasMappings(), CGC_Assembly::x_Index(), CSeq_loc_Mapper::x_InitGCSequence(), and CGC_Assembly_Parser::x_ParseGCSequence().

IsSetSet_type()

bool CGC_AssemblySet_Base::IsSetSet_type ( void  ) const

inline

Check if a value has been assigned to Set_type data member.

Data member Set_type is mandatory; its type is defined as 'typedef int TSet_type'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 458 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::m_set_State.

Referenced by CGC_AssemblySet_Base::CanGetSet_type(), and CGC_AssemblySet_Base::SetSet_type().

IsSetSimilarity() [1/2]

bool CGC_DbTagAlias_Base::IsSetSimilarity ( void  ) const

inline

Check if a value has been assigned to Similarity data member.

Data member Similarity is mandatory; its type is defined as 'typedef int TSimilarity'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 296 of file GC_DbTagAlias_.hpp.

References CGC_DbTagAlias_Base::m_set_State.

Referenced by CGC_DbTagAlias_Base::CanGetSimilarity(), and CGC_DbTagAlias_Base::SetSimilarity().

IsSetSimilarity() [2/2]

bool CGC_SeqIdAlias_Base::IsSetSimilarity ( void  ) const

inline

Check if a value has been assigned to Similarity data member.

Data member Similarity is mandatory; its type is defined as 'typedef int TSimilarity'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 372 of file GC_SeqIdAlias_.hpp.

References CGC_SeqIdAlias_Base::m_set_State.

Referenced by CGC_SeqIdAlias_Base::CanGetSimilarity(), and CGC_SeqIdAlias_Base::SetSimilarity().

IsSetState()

bool CGC_TaggedSequences_Base::IsSetState ( void  ) const

inline

Check if a value has been assigned to State data member.

Data member State is mandatory; its type is defined as 'typedef int TState'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 209 of file GC_TaggedSequences_.hpp.

References CGC_TaggedSequences_Base::m_set_State.

Referenced by CGC_TaggedSequences_Base::CanGetState(), and CGC_TaggedSequences_Base::SetState().

IsSetStats() [1/3]

bool CGC_AssemblySet_Base::IsSetStats ( void  ) const

inline

statistics "stats" field holds stats for all chromosomes combined: Check if a value has been assigned to Stats data member.

Data member Stats is optional; its type is defined as 'typedef CGC_SequenceStats TStats'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 637 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::m_Stats.

Referenced by CGC_AssemblySet_Base::CanGetStats().

IsSetStats() [2/3]

bool CGC_AssemblyUnit_Base::IsSetStats ( void  ) const

inline

statistics "stats" field holds stats for all chromosomes combined: ordered/unordered scaffolds "unplaced-stats" holds stats for ChrUn which is omitted from "stats" Check if a value has been assigned to Stats data member.

Data member Stats is optional; its type is defined as 'typedef CGC_SequenceStats TStats'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 598 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::m_Stats.

Referenced by CGC_AssemblyUnit_Base::CanGetStats().

IsSetStats() [3/3]

bool CGC_Sequence_Base::IsSetStats ( void  ) const

inline

statistics Check if a value has been assigned to Stats data member.

Data member Stats is optional; its type is defined as 'typedef CGC_SequenceStats TStats'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 663 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::m_Stats.

Referenced by CGC_Sequence_Base::CanGetStats().

IsSetStats_category()

bool CGC_Scaf_stats_Base::IsSetStats_category ( void  ) const

inline

Check if a value has been assigned to Stats_category data member.

Data member Stats_category is mandatory; its type is defined as 'typedef int TStats_category'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 275 of file GC_Scaf_stats_.hpp.

References CGC_Scaf_stats_Base::m_set_State.

Referenced by CGC_Scaf_stats_Base::CanGetStats_category(), and CGC_Scaf_stats_Base::SetStats_category().

IsSetStructure()

bool CGC_Sequence_Base::IsSetStructure ( void  ) const

inline

locations of ordered scaffolds/components Check if a value has been assigned to Structure data member.

Data member Structure is optional; its type is defined as 'typedef CDelta_ext TStructure'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 642 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::m_Structure.

Referenced by CGC_Sequence_Base::CanGetStructure(), CIdMapperGCAssembly::x_AddAliasMappings(), CGC_Assembly_Parser::x_AddBioseq(), CSeq_loc_Mapper::x_IsUCSCRandomChr(), and CGC_Assembly_Parser::x_ParseGCSequence().

IsSetSubmitter_date()

bool CGC_AssemblyDesc_Base::IsSetSubmitter_date ( void  ) const

inline

Submitter release date Check if a value has been assigned to Submitter_date data member.

Data member Submitter_date is optional; its type is defined as 'typedef CDate TSubmitter_date'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1396 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_Submitter_date.

Referenced by CGC_AssemblyDesc_Base::CanGetSubmitter_date().

IsSetSubmitter_name()

bool CGC_AssemblyDesc_Base::IsSetSubmitter_name ( void  ) const

inline

Check if a value has been assigned to Submitter_name data member.

Data member Submitter_name is optional; its type is defined as 'typedef string TSubmitter_name'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 970 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_set_State.

Referenced by CGC_AssemblyDesc_Base::CanGetSubmitter_name(), and CGC_AssemblyDesc_Base::SetSubmitter_name().

IsSetSubmitter_organization()

bool CGC_AssemblyDesc_Base::IsSetSubmitter_organization ( void  ) const

inline

organization which submitted this assembly.

populated from BioProject Check if a value has been assigned to Submitter_organization data member.

Data member Submitter_organization is optional; its type is defined as 'typedef CStringUTF8 TSubmitter_organization'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1582 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_set_State.

Referenced by CGC_AssemblyDesc_Base::CanGetSubmitter_organization(), and CGC_AssemblyDesc_Base::SetSubmitter_organization().

IsSetSynonyms()

bool CGC_AssemblyDesc_Base::IsSetSynonyms ( void  ) const

inline

Synonyms: Other releases of same assembly Check if a value has been assigned to Synonyms data member.

Data member Synonyms is optional; its type is defined as 'typedef list< CRef< CGC_DbTagAlias > > TSynonyms'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1371 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_set_State.

IsSetUnaligned_scaf()

bool CGC_SequenceStats_Base::IsSetUnaligned_scaf ( void  ) const

inline

unaligned at full assembly level Check if a value has been assigned to Unaligned_scaf data member.

Data member Unaligned_scaf is optional; its type is defined as 'typedef list< CRef< CGC_Scaf_stats > > TUnaligned_scaf'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 457 of file GC_SequenceStats_.hpp.

References CGC_SequenceStats_Base::m_set_State.

IsSetUnordered_scaf()

bool CGC_SequenceStats_Base::IsSetUnordered_scaf ( void  ) const

inline

Check if a value has been assigned to Unordered_scaf data member.

Data member Unordered_scaf is mandatory; its type is defined as 'typedef list< CRef< CGC_Scaf_stats > > TUnordered_scaf'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 382 of file GC_SequenceStats_.hpp.

References CGC_SequenceStats_Base::m_set_State.

IsSetUnplaced_scaf()

bool CGC_SequenceStats_Base::IsSetUnplaced_scaf ( void  ) const

inline

unplaced at full assembly level Check if a value has been assigned to Unplaced_scaf data member.

Data member Unplaced_scaf is optional; its type is defined as 'typedef list< CRef< CGC_Scaf_stats > > TUnplaced_scaf'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 407 of file GC_SequenceStats_.hpp.

References CGC_SequenceStats_Base::m_set_State.

IsSetUnplaced_stats()

bool CGC_AssemblyUnit_Base::IsSetUnplaced_stats ( void  ) const

inline

Check if a value has been assigned to Unplaced_stats data member.

Data member Unplaced_stats is optional; its type is defined as 'typedef list< CRef< CGC_Scaf_stats > > TUnplaced_stats'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 619 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::m_set_State.

IsSetUnplaced_unlocalized_stats()

bool CGC_AssemblyUnit_Base::IsSetUnplaced_unlocalized_stats ( void  ) const

inline

Check if a value has been assigned to Unplaced_unlocalized_stats data member.

Data member Unplaced_unlocalized_stats is optional; its type is defined as 'typedef list< CRef< CGC_Scaf_stats > > TUnplaced_unlocalized_stats'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 644 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::m_set_State.

IsSetValue() [1/2]

bool CGC_Query_Base::IsSetValue ( void  ) const

inline

Check if a value has been assigned to Value data member.

Data member Value is mandatory; its type is defined as 'typedef string TValue'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 251 of file GC_Query_.hpp.

References CGC_Query_Base::m_set_State.

Referenced by CGC_Query_Base::CanGetValue(), and CGC_Query_Base::SetValue().

IsSetValue() [2/2]

bool CGC_Scaf_stats_Base::IsSetValue ( void  ) const

inline

Check if a value has been assigned to Value data member.

Data member Value is mandatory; its type is defined as 'typedef Uint8 TValue'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 322 of file GC_Scaf_stats_.hpp.

References CGC_Scaf_stats_Base::m_set_State.

Referenced by CGC_Scaf_stats_Base::CanGetValue(), and CGC_Scaf_stats_Base::SetValue().

IsSetWgs_acc_number()

bool CGC_AssemblyDesc_Base::IsSetWgs_acc_number ( void  ) const

inline

Check if a value has been assigned to Wgs_acc_number data member.

Data member Wgs_acc_number is optional; its type is defined as 'typedef int TWgs_acc_number'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1205 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_set_State.

Referenced by CGC_AssemblyDesc_Base::CanGetWgs_acc_number(), and CGC_AssemblyDesc_Base::SetWgs_acc_number().

IsSetWgs_acc_prefix()

bool CGC_AssemblyDesc_Base::IsSetWgs_acc_prefix ( void  ) const

inline

Check if a value has been assigned to Wgs_acc_prefix data member.

Data member Wgs_acc_prefix is optional; its type is defined as 'typedef string TWgs_acc_prefix'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1158 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_set_State.

Referenced by CGC_AssemblyDesc_Base::CanGetWgs_acc_prefix(), and CGC_AssemblyDesc_Base::SetWgs_acc_prefix().

IsSingle()

bool CGC_Replicon_Base::C_Sequence::IsSingle ( void  ) const

inline

Check if variant Single is selected.

Single type is defined as 'typedef CGC_Sequence TSingle'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 427 of file GC_Replicon_.hpp.

Referenced by CIdMapperGCAssembly::x_AddAliasMappings(), CGC_Assembly::x_Index(), CSeq_loc_Mapper::x_InitGCAssembly(), and CGC_Assembly_Parser::x_ParseGCAssembly().

IsUnit()

bool CGC_Assembly_Base::IsUnit ( void  ) const

inline

Check if variant Unit is selected.

Unit type is defined as 'typedef CGC_AssemblyUnit TUnit'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 260 of file GC_Assembly_.hpp.

References CGC_Assembly_Base::e_Unit, and CGC_Assembly_Base::m_choice.

Referenced by CGC_Assembly::CreateHierarchy(), CAssemblyObjectLoader::Execute(), GetAssebmlyDesc(), CGC_Assembly::GetAssemblyUnits(), CGC_Assembly::GetDesc(), CGC_Assembly::GetDisplayName(), CGC_Assembly::GetFileSafeDisplayName(), CGC_Assembly::GetName(), CGC_Assembly::GetTaxId(), CGC_Assembly::GetUnitClass(), CGC_Assembly::IsGenBank(), CGC_AssemblyUnit::IsPrimaryUnit(), CGC_Assembly::IsRefSeq(), CGC_Assembly::IsTargetSetReference(), s_Extract(), CIdMapperGCAssembly::x_AddAliasMappings(), CGC_Assembly::x_GetId(), CGC_Assembly::x_Index(), CSeq_loc_Mapper::x_InitGCAssembly(), and CGC_Assembly_Parser::x_ParseGCAssembly().

operator=() [1/31]

C_Sequence& CGC_Replicon_Base::C_Sequence::operator= ( const C_Sequence &  )

private

operator=() [2/31]

CGC_Assemblies& CGC_Assemblies::operator= ( const CGC_Assemblies &  value )

private

operator=() [3/31]

CGC_Assemblies_Base& CGC_Assemblies_Base::operator= ( const CGC_Assemblies_Base &  )

private

operator=() [4/31]

CGC_Assembly_Base& CGC_Assembly_Base::operator= ( const CGC_Assembly_Base &  )

private

operator=() [5/31]

CGC_AssemblyDesc& CGC_AssemblyDesc::operator= ( const CGC_AssemblyDesc &  value )

private

operator=() [6/31]

CGC_AssemblyDesc_Base& CGC_AssemblyDesc_Base::operator= ( const CGC_AssemblyDesc_Base &  )

private

operator=() [7/31]

CGC_AssemblySet_Base& CGC_AssemblySet_Base::operator= ( const CGC_AssemblySet_Base &  )

private

operator=() [8/31]

CGC_AssemblyUnit_Base& CGC_AssemblyUnit_Base::operator= ( const CGC_AssemblyUnit_Base &  )

private

operator=() [9/31]

CGC_DbTagAlias& CGC_DbTagAlias::operator= ( const CGC_DbTagAlias &  value )

private

operator=() [10/31]

CGC_DbTagAlias_Base& CGC_DbTagAlias_Base::operator= ( const CGC_DbTagAlias_Base &  )

private

operator=() [11/31]

CGC_External_Seqid& CGC_External_Seqid::operator= ( const CGC_External_Seqid &  value )

private

operator=() [12/31]

CGC_External_Seqid_Base& CGC_External_Seqid_Base::operator= ( const CGC_External_Seqid_Base &  )

private

operator=() [13/31]

CGC_Genome& CGC_Genome::operator= ( const CGC_Genome &  value )

private

operator=() [14/31]

CGC_Genome_Base& CGC_Genome_Base::operator= ( const CGC_Genome_Base &  )

private

operator=() [15/31]

CGC_GenomicPart& CGC_GenomicPart::operator= ( const CGC_GenomicPart &  value )

private

operator=() [16/31]

CGC_GenomicPart_Base& CGC_GenomicPart_Base::operator= ( const CGC_GenomicPart_Base &  )

private

operator=() [17/31]

CGC_Project& CGC_Project::operator= ( const CGC_Project &  value )

private

operator=() [18/31]

CGC_Project_Base& CGC_Project_Base::operator= ( const CGC_Project_Base &  )

private

operator=() [19/31]

CGC_Query& CGC_Query::operator= ( const CGC_Query &  value )

private

operator=() [20/31]

CGC_Query_Base& CGC_Query_Base::operator= ( const CGC_Query_Base &  )

private

operator=() [21/31]

CGC_Replicon_Base& CGC_Replicon_Base::operator= ( const CGC_Replicon_Base &  )

private

operator=() [22/31]

CGC_Scaf_stats& CGC_Scaf_stats::operator= ( const CGC_Scaf_stats &  value )

private

operator=() [23/31]

CGC_Scaf_stats_Base& CGC_Scaf_stats_Base::operator= ( const CGC_Scaf_stats_Base &  )

private

operator=() [24/31]

CGC_SeqIdAlias_Base& CGC_SeqIdAlias_Base::operator= ( const CGC_SeqIdAlias_Base &  )

private

operator=() [25/31]

CGC_Sequence_Base& CGC_Sequence_Base::operator= ( const CGC_Sequence_Base &  )

private

operator=() [26/31]

CGC_SequenceStats& CGC_SequenceStats::operator= ( const CGC_SequenceStats &  value )

private

operator=() [27/31]

CGC_SequenceStats_Base& CGC_SequenceStats_Base::operator= ( const CGC_SequenceStats_Base &  )

private

operator=() [28/31]

CGC_TaggedSequences& CGC_TaggedSequences::operator= ( const CGC_TaggedSequences &  value )

private

operator=() [29/31]

CGC_TaggedSequences_Base& CGC_TaggedSequences_Base::operator= ( const CGC_TaggedSequences_Base &  )

private

operator=() [30/31]

CGC_TypedSeqId& CGC_TypedSeqId::operator= ( const CGC_TypedSeqId &  value )

private

operator=() [31/31]

CGC_TypedSeqId_Base& CGC_TypedSeqId_Base::operator= ( const CGC_TypedSeqId_Base &  )

private

Reset() [1/19]

void CGC_Assemblies_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 64 of file GC_Assemblies_.cpp.

References CGC_Assemblies_Base::ResetAssemblies(), and CGC_Assemblies_Base::ResetQuery().

Reset() [2/19]

void CGC_Assembly_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 52 of file GC_Assembly_.cpp.

References CGC_Assembly_Base::e_not_set, CGC_Assembly_Base::m_choice, and CGC_Assembly_Base::ResetSelection().

Referenced by CGC_Assembly_Base::~CGC_Assembly_Base().

Reset() [3/19]

void CGC_AssemblyDesc_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 182 of file GC_AssemblyDesc_.cpp.

References CGC_AssemblyDesc_Base::ResetAnnot(), CGC_AssemblyDesc_Base::ResetCoverage(), CGC_AssemblyDesc_Base::ResetDescr(), CGC_AssemblyDesc_Base::ResetDisplay_name(), CGC_AssemblyDesc_Base::ResetFilesafe_name(), CGC_AssemblyDesc_Base::ResetLong_name(), CGC_AssemblyDesc_Base::ResetName(), CGC_AssemblyDesc_Base::ResetPartial(), CGC_AssemblyDesc_Base::ResetProjects(), CGC_AssemblyDesc_Base::ResetRelease_level(), CGC_AssemblyDesc_Base::ResetRelease_status(), CGC_AssemblyDesc_Base::ResetRelease_type(), CGC_AssemblyDesc_Base::ResetSubmitter_date(), CGC_AssemblyDesc_Base::ResetSubmitter_name(), CGC_AssemblyDesc_Base::ResetSubmitter_organization(), CGC_AssemblyDesc_Base::ResetSynonyms(), CGC_AssemblyDesc_Base::ResetWgs_acc_number(), and CGC_AssemblyDesc_Base::ResetWgs_acc_prefix().

Reset() [4/19]

void CGC_AssemblySet_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 138 of file GC_AssemblySet_.cpp.

References CGC_AssemblySet_Base::ResetClass(), CGC_AssemblySet_Base::ResetDesc(), CGC_AssemblySet_Base::ResetId(), CGC_AssemblySet_Base::ResetMore_assemblies(), CGC_AssemblySet_Base::ResetPrimary_assembly(), CGC_AssemblySet_Base::ResetSet_type(), and CGC_AssemblySet_Base::ResetStats().

Reset() [5/19]

void CGC_AssemblyUnit_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 128 of file GC_AssemblyUnit_.cpp.

References CGC_AssemblyUnit_Base::ResetClass(), CGC_AssemblyUnit_Base::ResetDesc(), CGC_AssemblyUnit_Base::ResetId(), CGC_AssemblyUnit_Base::ResetMols(), CGC_AssemblyUnit_Base::ResetOther_sequences(), CGC_AssemblyUnit_Base::ResetStats(), CGC_AssemblyUnit_Base::ResetUnplaced_stats(), and CGC_AssemblyUnit_Base::ResetUnplaced_unlocalized_stats().

Reset() [6/19]

void CGC_DbTagAlias_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 95 of file GC_DbTagAlias_.cpp.

References CGC_DbTagAlias_Base::ResetGenbank(), CGC_DbTagAlias_Base::ResetRefseq(), and CGC_DbTagAlias_Base::ResetSimilarity().

Reset() [7/19]

void CGC_External_Seqid_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 71 of file GC_External_Seqid_.cpp.

References CGC_External_Seqid_Base::ResetExternal(), and CGC_External_Seqid_Base::ResetId().

Reset() [8/19]

void CGC_Genome_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 95 of file GC_Genome_.cpp.

References CGC_Genome_Base::ResetChr_names(), CGC_Genome_Base::ResetDescr(), CGC_Genome_Base::ResetId(), CGC_Genome_Base::ResetParts(), and CGC_Genome_Base::ResetProjects().

Reset() [9/19]

void CGC_GenomicPart_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 53 of file GC_GenomicPart_.cpp.

References CGC_GenomicPart_Base::e_not_set, CGC_GenomicPart_Base::m_choice, and CGC_GenomicPart_Base::ResetSelection().

Referenced by CGC_GenomicPart_Base::~CGC_GenomicPart_Base().

Reset() [10/19]

void CGC_Project_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 56 of file GC_Project_.cpp.

References CGC_Project_Base::ResetProject_id(), and CGC_Project_Base::ResetProject_role().

Reset() [11/19]

void CGC_Query_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 62 of file GC_Query_.cpp.

References CGC_Query_Base::ResetParam(), and CGC_Query_Base::ResetValue().

Reset() [12/19]

void CGC_Replicon_Base::C_Sequence::Reset

(

void

)

Reset the whole object.

Definition at line 51 of file GC_Replicon_.cpp.

References CGC_Replicon_Base::C_Sequence::e_not_set, CGC_Replicon_Base::C_Sequence::m_choice, and CGC_Replicon_Base::C_Sequence::ResetSelection().

Reset() [13/19]

void CGC_Replicon_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 178 of file GC_Replicon_.cpp.

References CGC_Replicon_Base::ResetLocal_name(), CGC_Replicon_Base::ResetName(), and CGC_Replicon_Base::ResetSequence().

Referenced by CGC_Replicon_Base::C_Sequence::~C_Sequence().

Reset() [14/19]

END_ENUM_INFO void CGC_Scaf_stats_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 131 of file GC_Scaf_stats_.cpp.

References CGC_Scaf_stats_Base::ResetStats_category(), and CGC_Scaf_stats_Base::ResetValue().

Reset() [15/19]

void CGC_SeqIdAlias_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 109 of file GC_SeqIdAlias_.cpp.

References CGC_SeqIdAlias_Base::ResetGi(), CGC_SeqIdAlias_Base::ResetGpipe(), CGC_SeqIdAlias_Base::ResetPublic(), and CGC_SeqIdAlias_Base::ResetSimilarity().

Reset() [16/19]

void CGC_Sequence_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 156 of file GC_Sequence_.cpp.

References CGC_Sequence_Base::ResetAnnot(), CGC_Sequence_Base::ResetDescr(), CGC_Sequence_Base::ResetPatch_type(), CGC_Sequence_Base::ResetRoles(), CGC_Sequence_Base::ResetSeq_id(), CGC_Sequence_Base::ResetSeq_id_synonyms(), CGC_Sequence_Base::ResetSequences(), CGC_Sequence_Base::ResetStats(), and CGC_Sequence_Base::ResetStructure().

Reset() [17/19]

void CGC_SequenceStats_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 87 of file GC_SequenceStats_.cpp.

References CGC_SequenceStats_Base::ResetAligned_scaf(), CGC_SequenceStats_Base::ResetAll_scaf(), CGC_SequenceStats_Base::ResetOrdered_scaf(), CGC_SequenceStats_Base::ResetUnaligned_scaf(), CGC_SequenceStats_Base::ResetUnordered_scaf(), and CGC_SequenceStats_Base::ResetUnplaced_scaf().

Reset() [18/19]

void CGC_TaggedSequences_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 70 of file GC_TaggedSequences_.cpp.

References CGC_TaggedSequences_Base::ResetSeqs(), and CGC_TaggedSequences_Base::ResetState().

Reset() [19/19]

void CGC_TypedSeqId_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 53 of file GC_TypedSeqId_.cpp.

References CGC_TypedSeqId_Base::e_not_set, CGC_TypedSeqId_Base::m_choice, and CGC_TypedSeqId_Base::ResetSelection().

Referenced by CGC_TypedSeqId_Base::~CGC_TypedSeqId_Base().

ResetAligned_scaf()

void CGC_SequenceStats_Base::ResetAligned_scaf

(

void

)

Reset Aligned_scaf data member.

Definition at line 75 of file GC_SequenceStats_.cpp.

References CGC_SequenceStats_Base::m_Aligned_scaf, and CGC_SequenceStats_Base::m_set_State.

Referenced by CGC_SequenceStats_Base::Reset().

ResetAll_scaf()

void CGC_SequenceStats_Base::ResetAll_scaf

(

void

)

Reset All_scaf data member.

Definition at line 51 of file GC_SequenceStats_.cpp.

References CGC_SequenceStats_Base::m_All_scaf, and CGC_SequenceStats_Base::m_set_State.

Referenced by CGC_SequenceStats_Base::Reset().

ResetAnnot() [1/2]

void CGC_AssemblyDesc_Base::ResetAnnot

(

void

)

Reset Annot data member.

Definition at line 130 of file GC_AssemblyDesc_.cpp.

References CGC_AssemblyDesc_Base::m_Annot, and CGC_AssemblyDesc_Base::m_set_State.

Referenced by CGC_AssemblyDesc_Base::Reset().

ResetAnnot() [2/2]

void CGC_Sequence_Base::ResetAnnot

(

void

)

Reset Annot data member.

Definition at line 104 of file GC_Sequence_.cpp.

References CGC_Sequence_Base::m_Annot, and CGC_Sequence_Base::m_set_State.

Referenced by CGC_Sequence_Base::Reset().

ResetAssemblies()

void CGC_Assemblies_Base::ResetAssemblies

(

void

)

Reset Assemblies data member.

Definition at line 58 of file GC_Assemblies_.cpp.

References CGC_Assemblies_Base::m_Assemblies, and CGC_Assemblies_Base::m_set_State.

Referenced by CGC_Assemblies_Base::Reset().

ResetChr_names()

void CGC_Genome_Base::ResetChr_names

(

void

)

Reset Chr_names data member.

Definition at line 83 of file GC_Genome_.cpp.

References CGC_Genome_Base::m_Chr_names, and CGC_Genome_Base::m_set_State.

Referenced by CGC_Genome_Base::Reset().

ResetClass() [1/2]

void CGC_AssemblySet_Base::ResetClass ( void  )

inline

Reset Class data member.

Definition at line 517 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::m_Class, and CGC_AssemblySet_Base::m_set_State.

Referenced by CGC_AssemblySet_Base::Reset().

ResetClass() [2/2]

void CGC_AssemblyUnit_Base::ResetClass ( void  )

inline

Reset Class data member.

Definition at line 483 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::m_Class, and CGC_AssemblyUnit_Base::m_set_State.

Referenced by CGC_AssemblyUnit_Base::Reset().

ResetCoverage()

void CGC_AssemblyDesc_Base::ResetCoverage ( void  )

inline

Reset Coverage data member.

Definition at line 1497 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_Coverage, and CGC_AssemblyDesc_Base::m_set_State.

Referenced by CGC_AssemblyDesc_Base::Reset().

ResetDesc() [1/2]

void CGC_AssemblySet_Base::ResetDesc

(

void

)

Reset Desc data member.

Definition at line 87 of file GC_AssemblySet_.cpp.

References CGC_AssemblySet_Base::m_Desc.

Referenced by CGC_AssemblySet_Base::CGC_AssemblySet_Base(), CGC_AssemblySet_Base::GetDesc(), CGC_AssemblySet_Base::Reset(), and CGC_AssemblySet_Base::SetDesc().

ResetDesc() [2/2]

void CGC_AssemblyUnit_Base::ResetDesc

(

void

)

Reset Desc data member.

Definition at line 73 of file GC_AssemblyUnit_.cpp.

References CGC_AssemblyUnit_Base::m_Desc.

Referenced by CGC_AssemblyUnit_Base::CGC_AssemblyUnit_Base(), CGC_AssemblyUnit_Base::GetDesc(), CGC_AssemblyUnit_Base::Reset(), and CGC_AssemblyUnit_Base::SetDesc().

ResetDescr() [1/3]

void CGC_AssemblyDesc_Base::ResetDescr

(

void

)

Reset Descr data member.

Definition at line 159 of file GC_AssemblyDesc_.cpp.

References CGC_AssemblyDesc_Base::m_Descr.

Referenced by CGC_AssemblyDesc_Base::Reset().

ResetDescr() [2/3]

void CGC_Genome_Base::ResetDescr

(

void

)

Reset Descr data member.

Definition at line 66 of file GC_Genome_.cpp.

References CGC_Genome_Base::m_Descr.

Referenced by CGC_Genome_Base::Reset().

ResetDescr() [3/3]

void CGC_Sequence_Base::ResetDescr

(

void

)

Reset Descr data member.

Definition at line 87 of file GC_Sequence_.cpp.

References CGC_Sequence_Base::m_Descr.

Referenced by CGC_Sequence_Base::Reset().

ResetDisplay_name()

void CGC_AssemblyDesc_Base::ResetDisplay_name

(

void

)

Reset Display_name data member.

Definition at line 106 of file GC_AssemblyDesc_.cpp.

References CGC_AssemblyDesc_Base::m_Display_name, and CGC_AssemblyDesc_Base::m_set_State.

Referenced by CGC_AssemblyDesc_Base::Reset().

ResetExternal()

void CGC_External_Seqid_Base::ResetExternal

(

void

)

Reset External data member.

Definition at line 51 of file GC_External_Seqid_.cpp.

References CGC_External_Seqid_Base::m_External, and CGC_External_Seqid_Base::m_set_State.

Referenced by CGC_External_Seqid_Base::Reset().

ResetFilesafe_name()

void CGC_AssemblyDesc_Base::ResetFilesafe_name

(

void

)

Reset Filesafe_name data member.

Definition at line 118 of file GC_AssemblyDesc_.cpp.

References CGC_AssemblyDesc_Base::m_Filesafe_name, and CGC_AssemblyDesc_Base::m_set_State.

Referenced by CGC_AssemblyDesc_Base::Reset().

ResetGenbank()

void CGC_DbTagAlias_Base::ResetGenbank

(

void

)

Reset Genbank data member.

Definition at line 78 of file GC_DbTagAlias_.cpp.

References CGC_DbTagAlias_Base::m_Genbank.

Referenced by CGC_DbTagAlias_Base::Reset().

ResetGi()

void CGC_SeqIdAlias_Base::ResetGi

(

void

)

Reset Gi data member.

Definition at line 92 of file GC_SeqIdAlias_.cpp.

References CGC_SeqIdAlias_Base::m_Gi.

Referenced by CGC_SeqIdAlias_Base::Reset().

ResetGpipe()

void CGC_SeqIdAlias_Base::ResetGpipe

(

void

)

Reset Gpipe data member.

Definition at line 75 of file GC_SeqIdAlias_.cpp.

References CGC_SeqIdAlias_Base::m_Gpipe.

Referenced by CGC_SeqIdAlias_Base::Reset(), and CGencollIdMapper::x_RemoveHiddenAccessions().

ResetId() [1/4]

END_ENUM_INFO void CGC_AssemblySet_Base::ResetId

(

void

)

Reset Id data member.

Definition at line 81 of file GC_AssemblySet_.cpp.

References CGC_AssemblySet_Base::m_Id, and CGC_AssemblySet_Base::m_set_State.

Referenced by CGC_AssemblySet_Base::Reset().

ResetId() [2/4]

END_ENUM_INFO void CGC_AssemblyUnit_Base::ResetId

(

void

)

Reset Id data member.

Definition at line 67 of file GC_AssemblyUnit_.cpp.

References CGC_AssemblyUnit_Base::m_Id, and CGC_AssemblyUnit_Base::m_set_State.

Referenced by CGC_AssemblyUnit_Base::Reset().

ResetId() [3/4]

void CGC_External_Seqid_Base::ResetId

(

void

)

Reset Id data member.

Definition at line 57 of file GC_External_Seqid_.cpp.

References CGC_External_Seqid_Base::m_Id.

Referenced by CGC_External_Seqid_Base::CGC_External_Seqid_Base(), CGC_External_Seqid_Base::GetId(), CGC_External_Seqid_Base::Reset(), and CGC_External_Seqid_Base::SetId().

ResetId() [4/4]

void CGC_Genome_Base::ResetId

(

void

)

Reset Id data member.

Definition at line 54 of file GC_Genome_.cpp.

References CGC_Genome_Base::m_Id, and CGC_Genome_Base::m_set_State.

Referenced by CGC_Genome_Base::Reset().

ResetLocal_name()

void CGC_Replicon_Base::ResetLocal_name

(

void

)

Reset Local_name data member.

Definition at line 158 of file GC_Replicon_.cpp.

References CGC_Replicon_Base::m_Local_name, and CGC_Replicon_Base::m_set_State.

Referenced by CGC_Replicon_Base::Reset().

ResetLong_name()

void CGC_AssemblyDesc_Base::ResetLong_name

(

void

)

Reset Long_name data member.

Definition at line 112 of file GC_AssemblyDesc_.cpp.

References CGC_AssemblyDesc_Base::m_Long_name, and CGC_AssemblyDesc_Base::m_set_State.

Referenced by CGC_AssemblyDesc_Base::Reset().

ResetMols()

void CGC_AssemblyUnit_Base::ResetMols

(

void

)

Reset Mols data member.

Definition at line 87 of file GC_AssemblyUnit_.cpp.

References CGC_AssemblyUnit_Base::m_Mols, and CGC_AssemblyUnit_Base::m_set_State.

Referenced by CGC_AssemblyUnit_Base::Reset().

ResetMore_assemblies()

void CGC_AssemblySet_Base::ResetMore_assemblies

(

void

)

Reset More_assemblies data member.

Definition at line 115 of file GC_AssemblySet_.cpp.

References CGC_AssemblySet_Base::m_More_assemblies, and CGC_AssemblySet_Base::m_set_State.

Referenced by CGC_AssemblySet_Base::Reset().

ResetName() [1/2]

void CGC_AssemblyDesc_Base::ResetName

(

void

)

Reset Name data member.

Definition at line 94 of file GC_AssemblyDesc_.cpp.

References CGC_AssemblyDesc_Base::m_Name, and CGC_AssemblyDesc_Base::m_set_State.

Referenced by CGC_AssemblyDesc_Base::Reset().

ResetName() [2/2]

void CGC_Replicon_Base::ResetName

(

void

)

Reset Name data member.

Definition at line 152 of file GC_Replicon_.cpp.

References CGC_Replicon_Base::m_Name, and CGC_Replicon_Base::m_set_State.

Referenced by CGC_Replicon_Base::Reset().

ResetOrdered_scaf()

void CGC_SequenceStats_Base::ResetOrdered_scaf

(

void

)

Reset Ordered_scaf data member.

Definition at line 57 of file GC_SequenceStats_.cpp.

References CGC_SequenceStats_Base::m_Ordered_scaf, and CGC_SequenceStats_Base::m_set_State.

Referenced by CGC_SequenceStats_Base::Reset().

ResetOther_sequences()

void CGC_AssemblyUnit_Base::ResetOther_sequences

(

void

)

Reset Other_sequences data member.

Definition at line 93 of file GC_AssemblyUnit_.cpp.

References CGC_AssemblyUnit_Base::m_Other_sequences, and CGC_AssemblyUnit_Base::m_set_State.

Referenced by CGC_AssemblyUnit_Base::Reset().

ResetParam()

void CGC_Query_Base::ResetParam

(

void

)

Reset Param data member.

Definition at line 50 of file GC_Query_.cpp.

References CGC_Query_Base::m_Param, and CGC_Query_Base::m_set_State.

Referenced by CGC_Query_Base::Reset().

ResetPartial()

void CGC_AssemblyDesc_Base::ResetPartial ( void  )

inline

Reset Partial data member.

Definition at line 1450 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_Partial, and CGC_AssemblyDesc_Base::m_set_State.

Referenced by CGC_AssemblyDesc_Base::Reset().

ResetParts()

void CGC_Genome_Base::ResetParts

(

void

)

Reset Parts data member.

Definition at line 89 of file GC_Genome_.cpp.

References CGC_Genome_Base::m_Parts, and CGC_Genome_Base::m_set_State.

Referenced by CGC_Genome_Base::Reset().

ResetPatch_type()

void CGC_Sequence_Base::ResetPatch_type ( void  )

inline

Reset Patch_type data member.

Definition at line 696 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::m_Patch_type, and CGC_Sequence_Base::m_set_State.

Referenced by CGC_Sequence_Base::Reset().

ResetPrimary_assembly()

void CGC_AssemblySet_Base::ResetPrimary_assembly

(

void

)

Reset Primary_assembly data member.

Definition at line 101 of file GC_AssemblySet_.cpp.

References CGC_AssemblySet_Base::m_Primary_assembly.

Referenced by CGC_AssemblySet_Base::CGC_AssemblySet_Base(), CGC_AssemblySet_Base::GetPrimary_assembly(), CGC_AssemblySet_Base::Reset(), and CGC_AssemblySet_Base::SetPrimary_assembly().

ResetProject_id()

void CGC_Project_Base::ResetProject_id ( void  )

inline

Reset Project_id data member.

Definition at line 259 of file GC_Project_.hpp.

References CGC_Project_Base::m_Project_id, and CGC_Project_Base::m_set_State.

Referenced by CGC_Project_Base::Reset().

ResetProject_role()

void CGC_Project_Base::ResetProject_role

(

void

)

Reset Project_role data member.

Definition at line 50 of file GC_Project_.cpp.

References CGC_Project_Base::m_Project_role, and CGC_Project_Base::m_set_State.

Referenced by CGC_Project_Base::Reset().

ResetProjects() [1/2]

END_ENUM_INFO void CGC_AssemblyDesc_Base::ResetProjects

(

void

)

Reset Projects data member.

Definition at line 88 of file GC_AssemblyDesc_.cpp.

References CGC_AssemblyDesc_Base::m_Projects, and CGC_AssemblyDesc_Base::m_set_State.

Referenced by CGC_AssemblyDesc_Base::Reset().

ResetProjects() [2/2]

void CGC_Genome_Base::ResetProjects

(

void

)

Reset Projects data member.

Definition at line 60 of file GC_Genome_.cpp.

References CGC_Genome_Base::m_Projects, and CGC_Genome_Base::m_set_State.

Referenced by CGC_Genome_Base::Reset().

ResetPublic()

END_ENUM_INFO void CGC_SeqIdAlias_Base::ResetPublic

(

void

)

Reset Public data member.

Definition at line 61 of file GC_SeqIdAlias_.cpp.

References CGC_SeqIdAlias_Base::m_Public.

Referenced by CGC_SeqIdAlias_Base::CGC_SeqIdAlias_Base(), CGC_SeqIdAlias_Base::GetPublic(), CGC_SeqIdAlias_Base::Reset(), and CGC_SeqIdAlias_Base::SetPublic().

ResetQuery()

void CGC_Assemblies_Base::ResetQuery

(

void

)

Reset Query data member.

Definition at line 52 of file GC_Assemblies_.cpp.

References CGC_Assemblies_Base::m_Query, and CGC_Assemblies_Base::m_set_State.

Referenced by CGC_Assemblies_Base::Reset().

ResetRefseq()

END_ENUM_INFO void CGC_DbTagAlias_Base::ResetRefseq

(

void

)

Reset Refseq data member.

Definition at line 61 of file GC_DbTagAlias_.cpp.

References CGC_DbTagAlias_Base::m_Refseq.

Referenced by CGC_DbTagAlias_Base::Reset().

ResetRelease_level()

void CGC_AssemblyDesc_Base::ResetRelease_level ( void  )

inline

Reset Release_level data member.

Definition at line 1544 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::eRelease_level_major, CGC_AssemblyDesc_Base::m_Release_level, and CGC_AssemblyDesc_Base::m_set_State.

Referenced by CGC_AssemblyDesc_Base::Reset(), and CGC_AssemblyDesc_Base::SetDefaultRelease_level().

ResetRelease_status()

void CGC_AssemblyDesc_Base::ResetRelease_status ( void  )

inline

Reset Release_status data member.

Definition at line 1311 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_Release_status, and CGC_AssemblyDesc_Base::m_set_State.

Referenced by CGC_AssemblyDesc_Base::Reset().

ResetRelease_type()

void CGC_AssemblyDesc_Base::ResetRelease_type ( void  )

inline

Reset Release_type data member.

Definition at line 1264 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_Release_type, and CGC_AssemblyDesc_Base::m_set_State.

Referenced by CGC_AssemblyDesc_Base::Reset().

ResetRoles()

void CGC_Sequence_Base::ResetRoles

(

void

)

Reset Roles data member.

Definition at line 150 of file GC_Sequence_.cpp.

References CGC_Sequence_Base::m_Roles, and CGC_Sequence_Base::m_set_State.

Referenced by CGC_Sequence_Base::Reset().

ResetSelection() [1/4]

void CGC_Assembly_Base::ResetSelection ( void  )

virtual

Reset the selection (set it to e_not_set).

Definition at line 58 of file GC_Assembly_.cpp.

References CGC_Assembly_Base::e_Assembly_set, CGC_Assembly_Base::e_not_set, CGC_Assembly_Base::e_Unit, CGC_Assembly_Base::m_choice, and CGC_Assembly_Base::m_object.

Referenced by CGC_Assembly_Base::Reset(), CGC_Assembly_Base::SetAssembly_set(), and CGC_Assembly_Base::SetUnit().

ResetSelection() [2/4]

void CGC_GenomicPart_Base::ResetSelection ( void  )

virtual

Reset the selection (set it to e_not_set).

Definition at line 59 of file GC_GenomicPart_.cpp.

References CGC_GenomicPart_Base::e_Assembly, CGC_GenomicPart_Base::e_Mol, CGC_GenomicPart_Base::e_not_set, CGC_GenomicPart_Base::e_Seqs, CGC_GenomicPart_Base::m_choice, and CGC_GenomicPart_Base::m_object.

Referenced by CGC_GenomicPart_Base::Reset(), CGC_GenomicPart_Base::SetAssembly(), CGC_GenomicPart_Base::SetMol(), and CGC_GenomicPart_Base::SetSeqs().

ResetSelection() [3/4]

void CGC_Replicon_Base::C_Sequence::ResetSelection

(

void

)

Reset the selection (set it to e_not_set).

Definition at line 57 of file GC_Replicon_.cpp.

References e_not_set.

Referenced by CGC_Replicon_Base::C_Sequence::Reset().

ResetSelection() [4/4]

void CGC_TypedSeqId_Base::ResetSelection ( void  )

virtual

Reset the selection (set it to e_not_set).

Definition at line 59 of file GC_TypedSeqId_.cpp.

References CGC_TypedSeqId_Base::e_External, CGC_TypedSeqId_Base::e_Genbank, CGC_TypedSeqId_Base::e_not_set, CGC_TypedSeqId_Base::e_Private, CGC_TypedSeqId_Base::e_Refseq, CGC_TypedSeqId_Base::m_choice, and CGC_TypedSeqId_Base::m_object.

Referenced by CGC_TypedSeqId_Base::Reset(), CGC_TypedSeqId_Base::SetExternal(), CGC_TypedSeqId_Base::SetGenbank(), CGC_TypedSeqId_Base::SetPrivate(), and CGC_TypedSeqId_Base::SetRefseq().

ResetSeq_id()

END_ENUM_INFO void CGC_Sequence_Base::ResetSeq_id

(

void

)

Reset Seq_id data member.

Definition at line 67 of file GC_Sequence_.cpp.

References CGC_Sequence_Base::m_Seq_id.

Referenced by CGC_Sequence_Base::CGC_Sequence_Base(), CGC_Sequence_Base::GetSeq_id(), CGC_Sequence_Base::Reset(), CGC_Sequence_Base::SetSeq_id(), CGencollIdMapper::x_RecursiveSeqFix(), and CGencollIdMapper::x_StripPseudoSeq().

ResetSeq_id_synonyms()

void CGC_Sequence_Base::ResetSeq_id_synonyms

(

void

)

Reset Seq_id_synonyms data member.

Definition at line 81 of file GC_Sequence_.cpp.

References CGC_Sequence_Base::m_Seq_id_synonyms, and CGC_Sequence_Base::m_set_State.

Referenced by CGC_Sequence_Base::Reset().

ResetSeqs()

END_ENUM_INFO void CGC_TaggedSequences_Base::ResetSeqs

(

void

)

Reset Seqs data member.

Definition at line 64 of file GC_TaggedSequences_.cpp.

References CGC_TaggedSequences_Base::m_Seqs, and CGC_TaggedSequences_Base::m_set_State.

Referenced by CGC_TaggedSequences_Base::Reset().

ResetSequence()

void CGC_Replicon_Base::ResetSequence

(

void

)

Reset Sequence data member.

Definition at line 164 of file GC_Replicon_.cpp.

References CGC_Replicon_Base::m_Sequence.

Referenced by CGC_Replicon_Base::CGC_Replicon_Base(), CGC_Replicon_Base::GetSequence(), CGC_Replicon_Base::Reset(), and CGC_Replicon_Base::SetSequence().

ResetSequences()

void CGC_Sequence_Base::ResetSequences

(

void

)

Reset Sequences data member.

Definition at line 110 of file GC_Sequence_.cpp.

References CGC_Sequence_Base::m_Sequences, and CGC_Sequence_Base::m_set_State.

Referenced by CGC_Sequence_Base::Reset().

ResetSet_type()

void CGC_AssemblySet_Base::ResetSet_type ( void  )

inline

Reset Set_type data member.

Definition at line 470 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::m_set_State, and CGC_AssemblySet_Base::m_Set_type.

Referenced by CGC_AssemblySet_Base::Reset().

ResetSimilarity() [1/2]

void CGC_DbTagAlias_Base::ResetSimilarity ( void  )

inline

Reset Similarity data member.

Definition at line 308 of file GC_DbTagAlias_.hpp.

References CGC_DbTagAlias_Base::m_set_State, and CGC_DbTagAlias_Base::m_Similarity.

Referenced by CGC_DbTagAlias_Base::Reset().

ResetSimilarity() [2/2]

void CGC_SeqIdAlias_Base::ResetSimilarity ( void  )

inline

Reset Similarity data member.

Definition at line 384 of file GC_SeqIdAlias_.hpp.

References CGC_SeqIdAlias_Base::m_set_State, and CGC_SeqIdAlias_Base::m_Similarity.

Referenced by CGC_SeqIdAlias_Base::Reset().

ResetState()

void CGC_TaggedSequences_Base::ResetState ( void  )

inline

Reset State data member.

Definition at line 221 of file GC_TaggedSequences_.hpp.

References CGC_TaggedSequences_Base::m_set_State, and CGC_TaggedSequences_Base::m_State.

Referenced by CGC_TaggedSequences_Base::Reset().

ResetStats() [1/3]

void CGC_AssemblySet_Base::ResetStats

(

void

)

Reset Stats data member.

Definition at line 121 of file GC_AssemblySet_.cpp.

References CGC_AssemblySet_Base::m_Stats.

Referenced by CGC_AssemblySet_Base::Reset().

ResetStats() [2/3]

void CGC_AssemblyUnit_Base::ResetStats

(

void

)

Reset Stats data member.

Definition at line 99 of file GC_AssemblyUnit_.cpp.

References CGC_AssemblyUnit_Base::m_Stats.

Referenced by CGC_AssemblyUnit_Base::Reset().

ResetStats() [3/3]

void CGC_Sequence_Base::ResetStats

(

void

)

Reset Stats data member.

Definition at line 133 of file GC_Sequence_.cpp.

References CGC_Sequence_Base::m_Stats.

Referenced by CGC_Sequence_Base::Reset().

ResetStats_category()

void CGC_Scaf_stats_Base::ResetStats_category ( void  )

inline

Reset Stats_category data member.

Definition at line 287 of file GC_Scaf_stats_.hpp.

References CGC_Scaf_stats_Base::m_set_State, and CGC_Scaf_stats_Base::m_Stats_category.

Referenced by CGC_Scaf_stats_Base::Reset().

ResetStructure()

void CGC_Sequence_Base::ResetStructure

(

void

)

Reset Structure data member.

Definition at line 116 of file GC_Sequence_.cpp.

References CGC_Sequence_Base::m_Structure.

Referenced by CGC_Sequence_Base::Reset().

ResetSubmitter_date()

void CGC_AssemblyDesc_Base::ResetSubmitter_date

(

void

)

Reset Submitter_date data member.

Definition at line 142 of file GC_AssemblyDesc_.cpp.

References CGC_AssemblyDesc_Base::m_Submitter_date.

Referenced by CGC_AssemblyDesc_Base::Reset().

ResetSubmitter_name()

void CGC_AssemblyDesc_Base::ResetSubmitter_name

(

void

)

Reset Submitter_name data member.

Definition at line 100 of file GC_AssemblyDesc_.cpp.

References CGC_AssemblyDesc_Base::m_set_State, and CGC_AssemblyDesc_Base::m_Submitter_name.

Referenced by CGC_AssemblyDesc_Base::Reset().

ResetSubmitter_organization()

void CGC_AssemblyDesc_Base::ResetSubmitter_organization

(

void

)

Reset Submitter_organization data member.

Definition at line 176 of file GC_AssemblyDesc_.cpp.

References CGC_AssemblyDesc_Base::m_set_State, and CGC_AssemblyDesc_Base::m_Submitter_organization.

Referenced by CGC_AssemblyDesc_Base::Reset().

ResetSynonyms()

void CGC_AssemblyDesc_Base::ResetSynonyms

(

void

)

Reset Synonyms data member.

Definition at line 136 of file GC_AssemblyDesc_.cpp.

References CGC_AssemblyDesc_Base::m_set_State, and CGC_AssemblyDesc_Base::m_Synonyms.

Referenced by CGC_AssemblyDesc_Base::Reset().

ResetUnaligned_scaf()

void CGC_SequenceStats_Base::ResetUnaligned_scaf

(

void

)

Reset Unaligned_scaf data member.

Definition at line 81 of file GC_SequenceStats_.cpp.

References CGC_SequenceStats_Base::m_set_State, and CGC_SequenceStats_Base::m_Unaligned_scaf.

Referenced by CGC_SequenceStats_Base::Reset().

ResetUnordered_scaf()

void CGC_SequenceStats_Base::ResetUnordered_scaf

(

void

)

Reset Unordered_scaf data member.

Definition at line 63 of file GC_SequenceStats_.cpp.

References CGC_SequenceStats_Base::m_set_State, and CGC_SequenceStats_Base::m_Unordered_scaf.

Referenced by CGC_SequenceStats_Base::Reset().

ResetUnplaced_scaf()

void CGC_SequenceStats_Base::ResetUnplaced_scaf

(

void

)

Reset Unplaced_scaf data member.

Definition at line 69 of file GC_SequenceStats_.cpp.

References CGC_SequenceStats_Base::m_set_State, and CGC_SequenceStats_Base::m_Unplaced_scaf.

Referenced by CGC_SequenceStats_Base::Reset().

ResetUnplaced_stats()

void CGC_AssemblyUnit_Base::ResetUnplaced_stats

(

void

)

Reset Unplaced_stats data member.

Definition at line 116 of file GC_AssemblyUnit_.cpp.

References CGC_AssemblyUnit_Base::m_set_State, and CGC_AssemblyUnit_Base::m_Unplaced_stats.

Referenced by CGC_AssemblyUnit_Base::Reset().

ResetUnplaced_unlocalized_stats()

void CGC_AssemblyUnit_Base::ResetUnplaced_unlocalized_stats

(

void

)

Reset Unplaced_unlocalized_stats data member.

Definition at line 122 of file GC_AssemblyUnit_.cpp.

References CGC_AssemblyUnit_Base::m_set_State, and CGC_AssemblyUnit_Base::m_Unplaced_unlocalized_stats.

Referenced by CGC_AssemblyUnit_Base::Reset().

ResetValue() [1/2]

void CGC_Query_Base::ResetValue

(

void

)

Reset Value data member.

Definition at line 56 of file GC_Query_.cpp.

References CGC_Query_Base::m_set_State, and CGC_Query_Base::m_Value.

Referenced by CGC_Query_Base::Reset().

ResetValue() [2/2]

void CGC_Scaf_stats_Base::ResetValue ( void  )

inline

Reset Value data member.

Definition at line 334 of file GC_Scaf_stats_.hpp.

References CGC_Scaf_stats_Base::m_set_State, and CGC_Scaf_stats_Base::m_Value.

Referenced by CGC_Scaf_stats_Base::Reset().

ResetWgs_acc_number()

void CGC_AssemblyDesc_Base::ResetWgs_acc_number ( void  )

inline

Reset Wgs_acc_number data member.

Definition at line 1217 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_set_State, and CGC_AssemblyDesc_Base::m_Wgs_acc_number.

Referenced by CGC_AssemblyDesc_Base::Reset().

ResetWgs_acc_prefix()

void CGC_AssemblyDesc_Base::ResetWgs_acc_prefix

(

void

)

Reset Wgs_acc_prefix data member.

Definition at line 124 of file GC_AssemblyDesc_.cpp.

References CGC_AssemblyDesc_Base::m_set_State, and CGC_AssemblyDesc_Base::m_Wgs_acc_prefix.

Referenced by CGC_AssemblyDesc_Base::Reset().

Select() [1/8]

void CGC_Assembly_Base::Select	(	E_Choice	index,
		EResetVariant	reset,
		CObjectMemoryPool *	pool
	)

Select the requested variant if needed, allocating CObject variants from memory pool.

Select() [2/8]

void CGC_GenomicPart_Base::Select	(	E_Choice	index,
		EResetVariant	reset,
		CObjectMemoryPool *	pool
	)

Select the requested variant if needed, allocating CObject variants from memory pool.

Select() [3/8]

void CGC_Replicon_Base::C_Sequence::Select	(	E_Choice	index,
		EResetVariant	reset,
		CObjectMemoryPool *	pool
	)

Select the requested variant if needed, allocating CObject variants from memory pool.

Select() [4/8]

void CGC_TypedSeqId_Base::Select	(	E_Choice	index,
		EResetVariant	reset,
		CObjectMemoryPool *	pool
	)

Select the requested variant if needed, allocating CObject variants from memory pool.

Select() [5/8]

void CGC_Assembly_Base::Select	(	E_Choice	index,
		EResetVariant	reset = eDoResetVariant
	)

Select the requested variant if needed.

Parameters

index	New selection state.
reset	Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant.

Referenced by CGC_Assembly_Base::SetAssembly_set(), and CGC_Assembly_Base::SetUnit().

Select() [6/8]

void CGC_GenomicPart_Base::Select	(	E_Choice	index,
		EResetVariant	reset = eDoResetVariant
	)

Select the requested variant if needed.

Parameters

index	New selection state.
reset	Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant.

Referenced by CGC_GenomicPart_Base::SetAssembly(), CGC_GenomicPart_Base::SetMol(), and CGC_GenomicPart_Base::SetSeqs().

Select() [7/8]

void CGC_Replicon_Base::C_Sequence::Select	(	E_Choice	index,
		EResetVariant	reset = eDoResetVariant
	)

Select the requested variant if needed.

Parameters

index	New selection state.
reset	Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant.

Select() [8/8]

void CGC_TypedSeqId_Base::Select	(	E_Choice	index,
		EResetVariant	reset = eDoResetVariant
	)

Select the requested variant if needed.

Parameters

index	New selection state.
reset	Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant.

Referenced by CGC_TypedSeqId_Base::SetExternal(), CGC_TypedSeqId_Base::SetGenbank(), CGC_TypedSeqId_Base::SetPrivate(), and CGC_TypedSeqId_Base::SetRefseq().

SelectionName() [1/4]

NCBI_NS_STD::string CGC_Assembly_Base::SelectionName ( E_Choice  index )

static

Retrieve selection name (for diagnostic purposes).

Parameters

index

One of possible selection states.

Returns

Name string.

Definition at line 92 of file GC_Assembly_.cpp.

References CGC_Assembly_Base::sm_SelectionNames.

SelectionName() [2/4]

NCBI_NS_STD::string CGC_GenomicPart_Base::SelectionName ( E_Choice  index )

static

Retrieve selection name (for diagnostic purposes).

Parameters

index

One of possible selection states.

Returns

Name string.

Definition at line 98 of file GC_GenomicPart_.cpp.

References CGC_GenomicPart_Base::sm_SelectionNames.

SelectionName() [3/4]

NCBI_NS_STD::string CGC_Replicon_Base::C_Sequence::SelectionName ( E_Choice  index )

static

Retrieve selection name (for diagnostic purposes).

Parameters

index

One of possible selection states.

Returns

Name string.

Definition at line 93 of file GC_Replicon_.cpp.

SelectionName() [4/4]

NCBI_NS_STD::string CGC_TypedSeqId_Base::SelectionName ( E_Choice  index )

static

Retrieve selection name (for diagnostic purposes).

Parameters

index

One of possible selection states.

Returns

Name string.

Definition at line 103 of file GC_TypedSeqId_.cpp.

References CGC_TypedSeqId_Base::sm_SelectionNames.

SetAligned_scaf()

CGC_SequenceStats_Base::TAligned_scaf & CGC_SequenceStats_Base::SetAligned_scaf ( void  )

inline

Assign a value to Aligned_scaf data member.

Returns

Reference to the data value.

Definition at line 450 of file GC_SequenceStats_.hpp.

References CGC_SequenceStats_Base::m_Aligned_scaf, and CGC_SequenceStats_Base::m_set_State.

SetAll_scaf()

CGC_SequenceStats_Base::TAll_scaf & CGC_SequenceStats_Base::SetAll_scaf ( void  )

inline

Assign a value to All_scaf data member.

Returns

Reference to the data value.

Definition at line 350 of file GC_SequenceStats_.hpp.

References CGC_SequenceStats_Base::m_All_scaf, and CGC_SequenceStats_Base::m_set_State.

SetAnnot() [1/2]

CGC_AssemblyDesc_Base::TAnnot & CGC_AssemblyDesc_Base::SetAnnot ( void  )

inline

Assign a value to Annot data member.

Returns

Reference to the data value.

Definition at line 1364 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_Annot, and CGC_AssemblyDesc_Base::m_set_State.

SetAnnot() [2/2]

CGC_Sequence_Base::TAnnot & CGC_Sequence_Base::SetAnnot ( void  )

inline

Assign a value to Annot data member.

Returns

Reference to the data value.

Definition at line 610 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::m_Annot, and CGC_Sequence_Base::m_set_State.

SetAssemblies()

CGC_Assemblies_Base::TAssemblies & CGC_Assemblies_Base::SetAssemblies ( void  )

inline

Assign a value to Assemblies data member.

Returns

Reference to the data value.

Definition at line 234 of file GC_Assemblies_.hpp.

References CGC_Assemblies_Base::m_Assemblies, and CGC_Assemblies_Base::m_set_State.

Referenced by CAssemblyObjectLoader::Execute().

SetAssembly() [1/2]

void CGC_GenomicPart_Base::SetAssembly

(

CGC_GenomicPart_Base::TAssembly &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 120 of file GC_GenomicPart_.cpp.

References CObject::AddReference(), CGC_GenomicPart_Base::e_Assembly, CGC_GenomicPart_Base::m_choice, CGC_GenomicPart_Base::m_object, CGC_GenomicPart_Base::ResetSelection(), and rapidjson::value.

SetAssembly() [2/2]

CGC_GenomicPart_Base::TAssembly & CGC_GenomicPart_Base::SetAssembly

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 114 of file GC_GenomicPart_.cpp.

References CGC_GenomicPart_Base::e_Assembly, eDoNotResetVariant, CGC_GenomicPart_Base::m_object, and CGC_GenomicPart_Base::Select().

SetAssembly_set() [1/2]

void CGC_Assembly_Base::SetAssembly_set

(

CGC_Assembly_Base::TAssembly_set &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 136 of file GC_Assembly_.cpp.

References CObject::AddReference(), CGC_Assembly_Base::e_Assembly_set, CGC_Assembly_Base::m_choice, CGC_Assembly_Base::m_object, CGC_Assembly_Base::ResetSelection(), and rapidjson::value.

SetAssembly_set() [2/2]

CGC_Assembly_Base::TAssembly_set & CGC_Assembly_Base::SetAssembly_set

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 130 of file GC_Assembly_.cpp.

References CGC_Assembly_Base::e_Assembly_set, eDoNotResetVariant, CGC_Assembly_Base::m_object, and CGC_Assembly_Base::Select().

Referenced by CGC_Assembly::CreateHierarchy(), GetAssebmlyDesc(), and CGC_Assembly::x_Index().

SetChr_names()

CGC_Genome_Base::TChr_names & CGC_Genome_Base::SetChr_names ( void  )

inline

Assign a value to Chr_names data member.

Returns

Reference to the data value.

Definition at line 402 of file GC_Genome_.hpp.

References CGC_Genome_Base::m_Chr_names, and CGC_Genome_Base::m_set_State.

SetClass() [1/4]

void CGC_AssemblySet_Base::SetClass ( CGC_AssemblySet_Base::TClass  value )

inline

Assign a value to Class data member.

Parameters

value

Value to assign

Definition at line 533 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::m_Class, CGC_AssemblySet_Base::m_set_State, and rapidjson::value.

SetClass() [2/4]

void CGC_AssemblyUnit_Base::SetClass ( CGC_AssemblyUnit_Base::TClass  value )

inline

Assign a value to Class data member.

Parameters

value

Value to assign

Definition at line 499 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::m_Class, CGC_AssemblyUnit_Base::m_set_State, and rapidjson::value.

SetClass() [3/4]

CGC_AssemblySet_Base::TClass & CGC_AssemblySet_Base::SetClass ( void  )

inline

Assign a value to Class data member.

Returns

Reference to the data value.

Definition at line 540 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::IsSetClass(), CGC_AssemblySet_Base::m_Class, CGC_AssemblySet_Base::m_set_State, and CSerialObject::UnassignedByte().

SetClass() [4/4]

CGC_AssemblyUnit_Base::TClass & CGC_AssemblyUnit_Base::SetClass ( void  )

inline

Assign a value to Class data member.

Returns

Reference to the data value.

Definition at line 506 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::IsSetClass(), CGC_AssemblyUnit_Base::m_Class, CGC_AssemblyUnit_Base::m_set_State, and CSerialObject::UnassignedByte().

SetCoverage() [1/2]

void CGC_AssemblyDesc_Base::SetCoverage ( CGC_AssemblyDesc_Base::TCoverage  value )

inline

Assign a value to Coverage data member.

Parameters

value

Value to assign

Definition at line 1513 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_Coverage, CGC_AssemblyDesc_Base::m_set_State, and rapidjson::value.

SetCoverage() [2/2]

CGC_AssemblyDesc_Base::TCoverage & CGC_AssemblyDesc_Base::SetCoverage ( void  )

inline

Assign a value to Coverage data member.

Returns

Reference to the data value.

Definition at line 1520 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetCoverage(), CGC_AssemblyDesc_Base::m_Coverage, CGC_AssemblyDesc_Base::m_set_State, and CSerialObject::UnassignedByte().

SetDefaultRelease_level()

void CGC_AssemblyDesc_Base::SetDefaultRelease_level ( void  )

inline

Assign default value to Release_level data member.

Definition at line 1551 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::ResetRelease_level().

SetDesc() [1/4]

void CGC_AssemblySet_Base::SetDesc

(

CGC_AssemblySet_Base::TDesc &

value

)

Assign a value to Desc data member.

Parameters

value

Reference to value.

Definition at line 96 of file GC_AssemblySet_.cpp.

References CGC_AssemblySet_Base::m_Desc, and rapidjson::value.

Referenced by GetAssebmlyDesc().

SetDesc() [2/4]

void CGC_AssemblyUnit_Base::SetDesc

(

CGC_AssemblyUnit_Base::TDesc &

value

)

Assign a value to Desc data member.

Parameters

value

Reference to value.

Definition at line 82 of file GC_AssemblyUnit_.cpp.

References CGC_AssemblyUnit_Base::m_Desc, and rapidjson::value.

Referenced by GetAssebmlyDesc().

SetDesc() [3/4]

CGC_AssemblySet_Base::TDesc & CGC_AssemblySet_Base::SetDesc ( void  )

inline

Assign a value to Desc data member.

Returns

Reference to the data value.

Definition at line 573 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::m_Desc, and CGC_AssemblySet_Base::ResetDesc().

SetDesc() [4/4]

CGC_AssemblyUnit_Base::TDesc & CGC_AssemblyUnit_Base::SetDesc ( void  )

inline

Assign a value to Desc data member.

Returns

Reference to the data value.

Definition at line 539 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::m_Desc, and CGC_AssemblyUnit_Base::ResetDesc().

SetDescr() [1/6]

void CGC_AssemblyDesc_Base::SetDescr

(

CGC_AssemblyDesc_Base::TDescr &

value

)

Assign a value to Descr data member.

Parameters

value

Reference to value.

Definition at line 164 of file GC_AssemblyDesc_.cpp.

References CGC_AssemblyDesc_Base::m_Descr, and rapidjson::value.

Referenced by RemoveVersions().

SetDescr() [2/6]

void CGC_Genome_Base::SetDescr

(

CGC_Genome_Base::TDescr &

value

)

Assign a value to Descr data member.

Parameters

value

Reference to value.

Definition at line 71 of file GC_Genome_.cpp.

References CGC_Genome_Base::m_Descr, and rapidjson::value.

SetDescr() [3/6]

void CGC_Sequence_Base::SetDescr

(

CGC_Sequence_Base::TDescr &

value

)

Assign a value to Descr data member.

Parameters

value

Reference to value.

Definition at line 92 of file GC_Sequence_.cpp.

References CGC_Sequence_Base::m_Descr, and rapidjson::value.

SetDescr() [4/6]

CGC_AssemblyDesc_Base::TDescr & CGC_AssemblyDesc_Base::SetDescr

(

void

)

Assign a value to Descr data member.

Returns

Reference to the data value.

Definition at line 169 of file GC_AssemblyDesc_.cpp.

References CGC_AssemblyDesc_Base::m_Descr.

SetDescr() [5/6]

CGC_Genome_Base::TDescr & CGC_Genome_Base::SetDescr

(

void

)

Assign a value to Descr data member.

Returns

Reference to the data value.

Definition at line 76 of file GC_Genome_.cpp.

References CGC_Genome_Base::m_Descr.

SetDescr() [6/6]

CGC_Sequence_Base::TDescr & CGC_Sequence_Base::SetDescr

(

void

)

Assign a value to Descr data member.

Returns

Reference to the data value.

Definition at line 97 of file GC_Sequence_.cpp.

References CGC_Sequence_Base::m_Descr.

SetDisplay_name() [1/3]

void CGC_AssemblyDesc_Base::SetDisplay_name ( const TDisplay_name &  value )

inline

Assign a value to Display_name data member.

Parameters

value

Value to assign

Definition at line 1038 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_Display_name, CGC_AssemblyDesc_Base::m_set_State, and rapidjson::value.

SetDisplay_name() [2/3]

void CGC_AssemblyDesc_Base::SetDisplay_name ( CGC_AssemblyDesc_Base::TDisplay_name &&  value )

inline

Definition at line 1045 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_Display_name, CGC_AssemblyDesc_Base::m_set_State, and rapidjson::value.

SetDisplay_name() [3/3]

CGC_AssemblyDesc_Base::TDisplay_name & CGC_AssemblyDesc_Base::SetDisplay_name ( void  )

inline

Assign a value to Display_name data member.

Returns

Reference to the data value.

Definition at line 1052 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetDisplay_name(), CGC_AssemblyDesc_Base::m_Display_name, CGC_AssemblyDesc_Base::m_set_State, and CSerialObject::UnassignedString().

SetExternal() [1/5]

void CGC_External_Seqid_Base::SetExternal ( const TExternal &  value )

inline

Assign a value to External data member.

Parameters

value

Value to assign

Definition at line 224 of file GC_External_Seqid_.hpp.

References CGC_External_Seqid_Base::m_External, CGC_External_Seqid_Base::m_set_State, and rapidjson::value.

SetExternal() [2/5]

void CGC_External_Seqid_Base::SetExternal ( CGC_External_Seqid_Base::TExternal &&  value )

inline

Definition at line 231 of file GC_External_Seqid_.hpp.

References CGC_External_Seqid_Base::m_External, CGC_External_Seqid_Base::m_set_State, and rapidjson::value.

SetExternal() [3/5]

void CGC_TypedSeqId_Base::SetExternal

(

CGC_TypedSeqId_Base::TExternal &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 191 of file GC_TypedSeqId_.cpp.

References CObject::AddReference(), CGC_TypedSeqId_Base::e_External, CGC_TypedSeqId_Base::m_choice, CGC_TypedSeqId_Base::m_object, CGC_TypedSeqId_Base::ResetSelection(), and rapidjson::value.

SetExternal() [4/5]

CGC_External_Seqid_Base::TExternal & CGC_External_Seqid_Base::SetExternal ( void  )

inline

Assign a value to External data member.

Returns

Reference to the data value.

Definition at line 238 of file GC_External_Seqid_.hpp.

References CGC_External_Seqid_Base::IsSetExternal(), CGC_External_Seqid_Base::m_External, CGC_External_Seqid_Base::m_set_State, and CSerialObject::UnassignedString().

SetExternal() [5/5]

CGC_TypedSeqId_Base::TExternal & CGC_TypedSeqId_Base::SetExternal

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 185 of file GC_TypedSeqId_.cpp.

References CGC_TypedSeqId_Base::e_External, eDoNotResetVariant, CGC_TypedSeqId_Base::m_object, and CGC_TypedSeqId_Base::Select().

SetFilesafe_name() [1/3]

void CGC_AssemblyDesc_Base::SetFilesafe_name ( const TFilesafe_name &  value )

inline

Assign a value to Filesafe_name data member.

Parameters

value

Value to assign

Definition at line 1132 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_Filesafe_name, CGC_AssemblyDesc_Base::m_set_State, and rapidjson::value.

SetFilesafe_name() [2/3]

void CGC_AssemblyDesc_Base::SetFilesafe_name ( CGC_AssemblyDesc_Base::TFilesafe_name &&  value )

inline

Definition at line 1139 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_Filesafe_name, CGC_AssemblyDesc_Base::m_set_State, and rapidjson::value.

SetFilesafe_name() [3/3]

CGC_AssemblyDesc_Base::TFilesafe_name & CGC_AssemblyDesc_Base::SetFilesafe_name ( void  )

inline

Assign a value to Filesafe_name data member.

Returns

Reference to the data value.

Definition at line 1146 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetFilesafe_name(), CGC_AssemblyDesc_Base::m_Filesafe_name, CGC_AssemblyDesc_Base::m_set_State, and CSerialObject::UnassignedString().

SetGenbank() [1/4]

void CGC_DbTagAlias_Base::SetGenbank

(

CGC_DbTagAlias_Base::TGenbank &

value

)

Assign a value to Genbank data member.

Parameters

value

Reference to value.

Definition at line 83 of file GC_DbTagAlias_.cpp.

References CGC_DbTagAlias_Base::m_Genbank, and rapidjson::value.

SetGenbank() [2/4]

void CGC_TypedSeqId_Base::SetGenbank

(

CGC_TypedSeqId_Base::TGenbank &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 125 of file GC_TypedSeqId_.cpp.

References CObject::AddReference(), CGC_TypedSeqId_Base::e_Genbank, CGC_TypedSeqId_Base::m_choice, CGC_TypedSeqId_Base::m_object, CGC_TypedSeqId_Base::ResetSelection(), and rapidjson::value.

SetGenbank() [3/4]

CGC_DbTagAlias_Base::TGenbank & CGC_DbTagAlias_Base::SetGenbank

(

void

)

Assign a value to Genbank data member.

Returns

Reference to the data value.

Definition at line 88 of file GC_DbTagAlias_.cpp.

References CGC_DbTagAlias_Base::m_Genbank.

SetGenbank() [4/4]

CGC_TypedSeqId_Base::TGenbank & CGC_TypedSeqId_Base::SetGenbank

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 119 of file GC_TypedSeqId_.cpp.

References CGC_TypedSeqId_Base::e_Genbank, eDoNotResetVariant, CGC_TypedSeqId_Base::m_object, and CGC_TypedSeqId_Base::Select().

Referenced by CGencollIdMapper::x_RemoveHiddenAccessions().

SetGi() [1/2]

void CGC_SeqIdAlias_Base::SetGi

(

CGC_SeqIdAlias_Base::TGi &

value

)

Assign a value to Gi data member.

Parameters

value

Reference to value.

Definition at line 97 of file GC_SeqIdAlias_.cpp.

References CGC_SeqIdAlias_Base::m_Gi, and rapidjson::value.

SetGi() [2/2]

CGC_SeqIdAlias_Base::TGi & CGC_SeqIdAlias_Base::SetGi

(

void

)

Assign a value to Gi data member.

Returns

Reference to the data value.

Definition at line 102 of file GC_SeqIdAlias_.cpp.

References CGC_SeqIdAlias_Base::m_Gi.

SetGpipe() [1/2]

void CGC_SeqIdAlias_Base::SetGpipe

(

CGC_SeqIdAlias_Base::TGpipe &

value

)

Assign a value to Gpipe data member.

Parameters

value

Reference to value.

Definition at line 80 of file GC_SeqIdAlias_.cpp.

References CGC_SeqIdAlias_Base::m_Gpipe, and rapidjson::value.

SetGpipe() [2/2]

CGC_SeqIdAlias_Base::TGpipe & CGC_SeqIdAlias_Base::SetGpipe

(

void

)

Assign a value to Gpipe data member.

Returns

Reference to the data value.

Definition at line 85 of file GC_SeqIdAlias_.cpp.

References CGC_SeqIdAlias_Base::m_Gpipe.

SetId() [1/5]

void CGC_External_Seqid_Base::SetId

(

CGC_External_Seqid_Base::TId &

value

)

Assign a value to Id data member.

Parameters

value

Reference to value.

Definition at line 66 of file GC_External_Seqid_.cpp.

References CGC_External_Seqid_Base::m_Id, and rapidjson::value.

SetId() [2/5]

CGC_AssemblySet_Base::TId & CGC_AssemblySet_Base::SetId ( void  )

inline

Assign a value to Id data member.

Returns

Reference to the data value.

Definition at line 451 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::m_Id, and CGC_AssemblySet_Base::m_set_State.

SetId() [3/5]

CGC_AssemblyUnit_Base::TId & CGC_AssemblyUnit_Base::SetId ( void  )

inline

Assign a value to Id data member.

Returns

Reference to the data value.

Definition at line 464 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::m_Id, and CGC_AssemblyUnit_Base::m_set_State.

SetId() [4/5]

CGC_External_Seqid_Base::TId & CGC_External_Seqid_Base::SetId ( void  )

inline

Assign a value to Id data member.

Returns

Reference to the data value.

Definition at line 271 of file GC_External_Seqid_.hpp.

References CGC_External_Seqid_Base::m_Id, and CGC_External_Seqid_Base::ResetId().

SetId() [5/5]

CGC_Genome_Base::TId & CGC_Genome_Base::SetId ( void  )

inline

Assign a value to Id data member.

Returns

Reference to the data value.

Definition at line 331 of file GC_Genome_.hpp.

References CGC_Genome_Base::m_Id, and CGC_Genome_Base::m_set_State.

SetLocal_name() [1/3]

void CGC_Replicon_Base::SetLocal_name ( const TLocal_name &  value )

inline

Assign a value to Local_name data member.

Parameters

value

Value to assign

Definition at line 521 of file GC_Replicon_.hpp.

References CGC_Replicon_Base::m_Local_name, CGC_Replicon_Base::m_set_State, and rapidjson::value.

SetLocal_name() [2/3]

void CGC_Replicon_Base::SetLocal_name ( CGC_Replicon_Base::TLocal_name &&  value )

inline

Definition at line 528 of file GC_Replicon_.hpp.

References CGC_Replicon_Base::m_Local_name, CGC_Replicon_Base::m_set_State, and rapidjson::value.

SetLocal_name() [3/3]

CGC_Replicon_Base::TLocal_name & CGC_Replicon_Base::SetLocal_name ( void  )

inline

Assign a value to Local_name data member.

Returns

Reference to the data value.

Definition at line 535 of file GC_Replicon_.hpp.

References CGC_Replicon_Base::IsSetLocal_name(), CGC_Replicon_Base::m_Local_name, CGC_Replicon_Base::m_set_State, and CSerialObject::UnassignedString().

SetLong_name() [1/3]

void CGC_AssemblyDesc_Base::SetLong_name ( const TLong_name &  value )

inline

Assign a value to Long_name data member.

Parameters

value

Value to assign

Definition at line 1085 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_Long_name, CGC_AssemblyDesc_Base::m_set_State, and rapidjson::value.

SetLong_name() [2/3]

void CGC_AssemblyDesc_Base::SetLong_name ( CGC_AssemblyDesc_Base::TLong_name &&  value )

inline

Definition at line 1092 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_Long_name, CGC_AssemblyDesc_Base::m_set_State, and rapidjson::value.

SetLong_name() [3/3]

CGC_AssemblyDesc_Base::TLong_name & CGC_AssemblyDesc_Base::SetLong_name ( void  )

inline

Assign a value to Long_name data member.

Returns

Reference to the data value.

Definition at line 1099 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetLong_name(), CGC_AssemblyDesc_Base::m_Long_name, CGC_AssemblyDesc_Base::m_set_State, and CSerialObject::UnassignedStringUTF8().

SetMol() [1/2]

void CGC_GenomicPart_Base::SetMol

(

CGC_GenomicPart_Base::TMol &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 142 of file GC_GenomicPart_.cpp.

References CObject::AddReference(), CGC_GenomicPart_Base::e_Mol, CGC_GenomicPart_Base::m_choice, CGC_GenomicPart_Base::m_object, CGC_GenomicPart_Base::ResetSelection(), and rapidjson::value.

SetMol() [2/2]

CGC_GenomicPart_Base::TMol & CGC_GenomicPart_Base::SetMol

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 136 of file GC_GenomicPart_.cpp.

References CGC_GenomicPart_Base::e_Mol, eDoNotResetVariant, CGC_GenomicPart_Base::m_object, and CGC_GenomicPart_Base::Select().

SetMols()

CGC_AssemblyUnit_Base::TMols & CGC_AssemblyUnit_Base::SetMols ( void  )

inline

Assign a value to Mols data member.

Returns

Reference to the data value.

Definition at line 566 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::m_Mols, and CGC_AssemblyUnit_Base::m_set_State.

SetMore_assemblies()

CGC_AssemblySet_Base::TMore_assemblies & CGC_AssemblySet_Base::SetMore_assemblies ( void  )

inline

Assign a value to More_assemblies data member.

Returns

Reference to the data value.

Definition at line 630 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::m_More_assemblies, and CGC_AssemblySet_Base::m_set_State.

SetName() [1/6]

void CGC_AssemblyDesc_Base::SetName ( const TName &  value )

inline

Assign a value to Name data member.

Parameters

value

Value to assign

Definition at line 944 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_Name, CGC_AssemblyDesc_Base::m_set_State, and rapidjson::value.

SetName() [2/6]

void CGC_Replicon_Base::SetName ( const TName &  value )

inline

Assign a value to Name data member.

Parameters

value

Value to assign

Definition at line 474 of file GC_Replicon_.hpp.

References CGC_Replicon_Base::m_Name, CGC_Replicon_Base::m_set_State, and rapidjson::value.

SetName() [3/6]

void CGC_AssemblyDesc_Base::SetName ( CGC_AssemblyDesc_Base::TName &&  value )

inline

Definition at line 951 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_Name, CGC_AssemblyDesc_Base::m_set_State, and rapidjson::value.

SetName() [4/6]

void CGC_Replicon_Base::SetName ( CGC_Replicon_Base::TName &&  value )

inline

Definition at line 481 of file GC_Replicon_.hpp.

References CGC_Replicon_Base::m_Name, CGC_Replicon_Base::m_set_State, and rapidjson::value.

SetName() [5/6]

CGC_AssemblyDesc_Base::TName & CGC_AssemblyDesc_Base::SetName ( void  )

inline

Assign a value to Name data member.

Returns

Reference to the data value.

Definition at line 958 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetName(), CGC_AssemblyDesc_Base::m_Name, CGC_AssemblyDesc_Base::m_set_State, and CSerialObject::UnassignedString().

SetName() [6/6]

CGC_Replicon_Base::TName & CGC_Replicon_Base::SetName ( void  )

inline

Assign a value to Name data member.

Returns

Reference to the data value.

Definition at line 488 of file GC_Replicon_.hpp.

References CGC_Replicon_Base::IsSetName(), CGC_Replicon_Base::m_Name, CGC_Replicon_Base::m_set_State, and CSerialObject::UnassignedString().

SetOrdered_scaf()

CGC_SequenceStats_Base::TOrdered_scaf & CGC_SequenceStats_Base::SetOrdered_scaf ( void  )

inline

Assign a value to Ordered_scaf data member.

Returns

Reference to the data value.

Definition at line 375 of file GC_SequenceStats_.hpp.

References CGC_SequenceStats_Base::m_Ordered_scaf, and CGC_SequenceStats_Base::m_set_State.

SetOther_sequences()

CGC_AssemblyUnit_Base::TOther_sequences & CGC_AssemblyUnit_Base::SetOther_sequences ( void  )

inline

Assign a value to Other_sequences data member.

Returns

Reference to the data value.

Definition at line 591 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::m_Other_sequences, and CGC_AssemblyUnit_Base::m_set_State.

SetParam() [1/3]

void CGC_Query_Base::SetParam ( const TParam &  value )

inline

Assign a value to Param data member.

Parameters

value

Value to assign

Definition at line 225 of file GC_Query_.hpp.

References CGC_Query_Base::m_Param, CGC_Query_Base::m_set_State, and rapidjson::value.

SetParam() [2/3]

void CGC_Query_Base::SetParam ( CGC_Query_Base::TParam &&  value )

inline

Definition at line 232 of file GC_Query_.hpp.

References CGC_Query_Base::m_Param, CGC_Query_Base::m_set_State, and rapidjson::value.

SetParam() [3/3]

CGC_Query_Base::TParam & CGC_Query_Base::SetParam ( void  )

inline

Assign a value to Param data member.

Returns

Reference to the data value.

Definition at line 239 of file GC_Query_.hpp.

References CGC_Query_Base::IsSetParam(), CGC_Query_Base::m_Param, CGC_Query_Base::m_set_State, and CSerialObject::UnassignedString().

SetPartial() [1/2]

void CGC_AssemblyDesc_Base::SetPartial ( CGC_AssemblyDesc_Base::TPartial  value )

inline

Assign a value to Partial data member.

Parameters

value

Value to assign

Definition at line 1466 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_Partial, CGC_AssemblyDesc_Base::m_set_State, and rapidjson::value.

SetPartial() [2/2]

CGC_AssemblyDesc_Base::TPartial & CGC_AssemblyDesc_Base::SetPartial ( void  )

inline

Assign a value to Partial data member.

Returns

Reference to the data value.

Definition at line 1473 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetPartial(), CGC_AssemblyDesc_Base::m_Partial, CGC_AssemblyDesc_Base::m_set_State, and CSerialObject::UnassignedByte().

SetParts()

CGC_Genome_Base::TParts & CGC_Genome_Base::SetParts ( void  )

inline

Assign a value to Parts data member.

Returns

Reference to the data value.

Definition at line 427 of file GC_Genome_.hpp.

References CGC_Genome_Base::m_Parts, and CGC_Genome_Base::m_set_State.

SetPatch_type() [1/2]

void CGC_Sequence_Base::SetPatch_type ( CGC_Sequence_Base::TPatch_type  value )

inline

Assign a value to Patch_type data member.

Parameters

value

Value to assign

Definition at line 712 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::m_Patch_type, CGC_Sequence_Base::m_set_State, and rapidjson::value.

SetPatch_type() [2/2]

CGC_Sequence_Base::TPatch_type & CGC_Sequence_Base::SetPatch_type ( void  )

inline

Assign a value to Patch_type data member.

Returns

Reference to the data value.

Definition at line 719 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::IsSetPatch_type(), CGC_Sequence_Base::m_Patch_type, CGC_Sequence_Base::m_set_State, and CSerialObject::UnassignedByte().

SetPrimary_assembly() [1/2]

void CGC_AssemblySet_Base::SetPrimary_assembly

(

CGC_AssemblySet_Base::TPrimary_assembly &

value

)

Assign a value to Primary_assembly data member.

Parameters

value

Reference to value.

Definition at line 110 of file GC_AssemblySet_.cpp.

References CGC_AssemblySet_Base::m_Primary_assembly, and rapidjson::value.

SetPrimary_assembly() [2/2]

CGC_AssemblySet_Base::TPrimary_assembly & CGC_AssemblySet_Base::SetPrimary_assembly ( void  )

inline

Assign a value to Primary_assembly data member.

Returns

Reference to the data value.

Definition at line 603 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::m_Primary_assembly, and CGC_AssemblySet_Base::ResetPrimary_assembly().

SetPrivate() [1/2]

void CGC_TypedSeqId_Base::SetPrivate

(

CGC_TypedSeqId_Base::TPrivate &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 169 of file GC_TypedSeqId_.cpp.

References CObject::AddReference(), CGC_TypedSeqId_Base::e_Private, CGC_TypedSeqId_Base::m_choice, CGC_TypedSeqId_Base::m_object, CGC_TypedSeqId_Base::ResetSelection(), and rapidjson::value.

SetPrivate() [2/2]

CGC_TypedSeqId_Base::TPrivate & CGC_TypedSeqId_Base::SetPrivate

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 163 of file GC_TypedSeqId_.cpp.

References CGC_TypedSeqId_Base::e_Private, eDoNotResetVariant, CGC_TypedSeqId_Base::m_object, and CGC_TypedSeqId_Base::Select().

SetProject_id() [1/2]

void CGC_Project_Base::SetProject_id ( CGC_Project_Base::TProject_id  value )

inline

Assign a value to Project_id data member.

Parameters

value

Value to assign

Definition at line 275 of file GC_Project_.hpp.

References CGC_Project_Base::m_Project_id, CGC_Project_Base::m_set_State, and rapidjson::value.

SetProject_id() [2/2]

CGC_Project_Base::TProject_id & CGC_Project_Base::SetProject_id ( void  )

inline

Assign a value to Project_id data member.

Returns

Reference to the data value.

Definition at line 282 of file GC_Project_.hpp.

References CGC_Project_Base::IsSetProject_id(), CGC_Project_Base::m_Project_id, CGC_Project_Base::m_set_State, and CSerialObject::UnassignedByte().

SetProject_role() [1/3]

void CGC_Project_Base::SetProject_role ( const TProject_role &  value )

inline

Assign a value to Project_role data member.

Parameters

value

Value to assign

Definition at line 221 of file GC_Project_.hpp.

References CGC_Project_Base::m_Project_role, CGC_Project_Base::m_set_State, and rapidjson::value.

SetProject_role() [2/3]

void CGC_Project_Base::SetProject_role ( CGC_Project_Base::TProject_role &&  value )

inline

Definition at line 228 of file GC_Project_.hpp.

References CGC_Project_Base::m_Project_role, CGC_Project_Base::m_set_State, and rapidjson::value.

SetProject_role() [3/3]

CGC_Project_Base::TProject_role & CGC_Project_Base::SetProject_role ( void  )

inline

Assign a value to Project_role data member.

Returns

Reference to the data value.

Definition at line 235 of file GC_Project_.hpp.

References CGC_Project_Base::IsSetProject_role(), CGC_Project_Base::m_Project_role, CGC_Project_Base::m_set_State, and CSerialObject::UnassignedString().

SetProjects() [1/2]

CGC_AssemblyDesc_Base::TProjects & CGC_AssemblyDesc_Base::SetProjects ( void  )

inline

Assign a value to Projects data member.

Returns

Reference to the data value.

Definition at line 916 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_Projects, and CGC_AssemblyDesc_Base::m_set_State.

SetProjects() [2/2]

CGC_Genome_Base::TProjects & CGC_Genome_Base::SetProjects ( void  )

inline

Assign a value to Projects data member.

Returns

Reference to the data value.

Definition at line 356 of file GC_Genome_.hpp.

References CGC_Genome_Base::m_Projects, and CGC_Genome_Base::m_set_State.

SetPublic() [1/2]

void CGC_SeqIdAlias_Base::SetPublic

(

CGC_SeqIdAlias_Base::TPublic &

value

)

Assign a value to Public data member.

Parameters

value

Reference to value.

Definition at line 70 of file GC_SeqIdAlias_.cpp.

References CGC_SeqIdAlias_Base::m_Public, and rapidjson::value.

Referenced by CGencollIdMapper::x_RemoveHiddenAccessions().

SetPublic() [2/2]

CGC_SeqIdAlias_Base::TPublic & CGC_SeqIdAlias_Base::SetPublic ( void  )

inline

Assign a value to Public data member.

Returns

Reference to the data value.

Definition at line 321 of file GC_SeqIdAlias_.hpp.

References CGC_SeqIdAlias_Base::m_Public, and CGC_SeqIdAlias_Base::ResetPublic().

SetQuery()

CGC_Assemblies_Base::TQuery & CGC_Assemblies_Base::SetQuery ( void  )

inline

Assign a value to Query data member.

Returns

Reference to the data value.

Definition at line 209 of file GC_Assemblies_.hpp.

References CGC_Assemblies_Base::m_Query, and CGC_Assemblies_Base::m_set_State.

SetRefseq() [1/4]

void CGC_DbTagAlias_Base::SetRefseq

(

CGC_DbTagAlias_Base::TRefseq &

value

)

Assign a value to Refseq data member.

Parameters

value

Reference to value.

Definition at line 66 of file GC_DbTagAlias_.cpp.

References CGC_DbTagAlias_Base::m_Refseq, and rapidjson::value.

SetRefseq() [2/4]

void CGC_TypedSeqId_Base::SetRefseq

(

CGC_TypedSeqId_Base::TRefseq &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 147 of file GC_TypedSeqId_.cpp.

References CObject::AddReference(), CGC_TypedSeqId_Base::e_Refseq, CGC_TypedSeqId_Base::m_choice, CGC_TypedSeqId_Base::m_object, CGC_TypedSeqId_Base::ResetSelection(), and rapidjson::value.

SetRefseq() [3/4]

CGC_DbTagAlias_Base::TRefseq & CGC_DbTagAlias_Base::SetRefseq

(

void

)

Assign a value to Refseq data member.

Returns

Reference to the data value.

Definition at line 71 of file GC_DbTagAlias_.cpp.

References CGC_DbTagAlias_Base::m_Refseq.

SetRefseq() [4/4]

CGC_TypedSeqId_Base::TRefseq & CGC_TypedSeqId_Base::SetRefseq

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 141 of file GC_TypedSeqId_.cpp.

References CGC_TypedSeqId_Base::e_Refseq, eDoNotResetVariant, CGC_TypedSeqId_Base::m_object, and CGC_TypedSeqId_Base::Select().

Referenced by CGencollIdMapper::x_RemoveHiddenAccessions().

SetRelease_level() [1/2]

void CGC_AssemblyDesc_Base::SetRelease_level ( CGC_AssemblyDesc_Base::TRelease_level  value )

inline

Assign a value to Release_level data member.

Parameters

value

Value to assign

Definition at line 1563 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_Release_level, CGC_AssemblyDesc_Base::m_set_State, and rapidjson::value.

SetRelease_level() [2/2]

CGC_AssemblyDesc_Base::TRelease_level & CGC_AssemblyDesc_Base::SetRelease_level ( void  )

inline

Assign a value to Release_level data member.

Returns

Reference to the data value.

Definition at line 1570 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetRelease_level(), CGC_AssemblyDesc_Base::m_Release_level, CGC_AssemblyDesc_Base::m_set_State, and CSerialObject::UnassignedByte().

SetRelease_status() [1/2]

void CGC_AssemblyDesc_Base::SetRelease_status ( CGC_AssemblyDesc_Base::TRelease_status  value )

inline

Assign a value to Release_status data member.

Parameters

value

Value to assign

Definition at line 1327 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_Release_status, CGC_AssemblyDesc_Base::m_set_State, and rapidjson::value.

SetRelease_status() [2/2]

CGC_AssemblyDesc_Base::TRelease_status & CGC_AssemblyDesc_Base::SetRelease_status ( void  )

inline

Assign a value to Release_status data member.

Returns

Reference to the data value.

Definition at line 1334 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetRelease_status(), CGC_AssemblyDesc_Base::m_Release_status, CGC_AssemblyDesc_Base::m_set_State, and CSerialObject::UnassignedByte().

SetRelease_type() [1/2]

void CGC_AssemblyDesc_Base::SetRelease_type ( CGC_AssemblyDesc_Base::TRelease_type  value )

inline

Assign a value to Release_type data member.

Parameters

value

Value to assign

Definition at line 1280 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_Release_type, CGC_AssemblyDesc_Base::m_set_State, and rapidjson::value.

SetRelease_type() [2/2]

CGC_AssemblyDesc_Base::TRelease_type & CGC_AssemblyDesc_Base::SetRelease_type ( void  )

inline

Assign a value to Release_type data member.

Returns

Reference to the data value.

Definition at line 1287 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetRelease_type(), CGC_AssemblyDesc_Base::m_Release_type, CGC_AssemblyDesc_Base::m_set_State, and CSerialObject::UnassignedByte().

SetRoles()

CGC_Sequence_Base::TRoles & CGC_Sequence_Base::SetRoles ( void  )

inline

Assign a value to Roles data member.

Returns

Reference to the data value.

Definition at line 749 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::m_Roles, and CGC_Sequence_Base::m_set_State.

Referenced by CGencollIdMapper::x_FillGpipeTopRole().

SetSeq_id() [1/2]

void CGC_Sequence_Base::SetSeq_id

(

CGC_Sequence_Base::TSeq_id &

value

)

Assign a value to Seq_id data member.

Parameters

value

Reference to value.

Definition at line 76 of file GC_Sequence_.cpp.

References CGC_Sequence_Base::m_Seq_id, and rapidjson::value.

Referenced by CGencollIdMapper::x_RecursiveSeqFix(), and CGencollIdMapper::x_StripPseudoSeq().

SetSeq_id() [2/2]

CGC_Sequence_Base::TSeq_id & CGC_Sequence_Base::SetSeq_id ( void  )

inline

Assign a value to Seq_id data member.

Returns

Reference to the data value.

Definition at line 537 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::m_Seq_id, and CGC_Sequence_Base::ResetSeq_id().

SetSeq_id_synonyms()

CGC_Sequence_Base::TSeq_id_synonyms & CGC_Sequence_Base::SetSeq_id_synonyms ( void  )

inline

Assign a value to Seq_id_synonyms data member.

Returns

Reference to the data value.

Definition at line 564 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::m_Seq_id_synonyms, and CGC_Sequence_Base::m_set_State.

Referenced by CGencollIdMapper::x_FillChromosomeIds(), CGencollIdMapper::x_RemoveHiddenAccessions(), and CGencollIdMapper::x_StripPseudoSeq().

SetSeqs() [1/3]

void CGC_GenomicPart_Base::SetSeqs

(

CGC_GenomicPart_Base::TSeqs &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 164 of file GC_GenomicPart_.cpp.

References CObject::AddReference(), CGC_GenomicPart_Base::e_Seqs, CGC_GenomicPart_Base::m_choice, CGC_GenomicPart_Base::m_object, CGC_GenomicPart_Base::ResetSelection(), and rapidjson::value.

SetSeqs() [2/3]

CGC_GenomicPart_Base::TSeqs & CGC_GenomicPart_Base::SetSeqs

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 158 of file GC_GenomicPart_.cpp.

References CGC_GenomicPart_Base::e_Seqs, eDoNotResetVariant, CGC_GenomicPart_Base::m_object, and CGC_GenomicPart_Base::Select().

SetSeqs() [3/3]

CGC_TaggedSequences_Base::TSeqs & CGC_TaggedSequences_Base::SetSeqs ( void  )

inline

Assign a value to Seqs data member.

Returns

Reference to the data value.

Definition at line 274 of file GC_TaggedSequences_.hpp.

References CGC_TaggedSequences_Base::m_Seqs, and CGC_TaggedSequences_Base::m_set_State.

SetSequence() [1/2]

void CGC_Replicon_Base::SetSequence

(

CGC_Replicon_Base::TSequence &

value

)

Assign a value to Sequence data member.

Parameters

value

Reference to value.

Definition at line 173 of file GC_Replicon_.cpp.

References CGC_Replicon_Base::m_Sequence, and rapidjson::value.

Referenced by CGC_Assembly::x_Index().

SetSequence() [2/2]

CGC_Replicon_Base::TSequence & CGC_Replicon_Base::SetSequence ( void  )

inline

Assign a value to Sequence data member.

Returns

Reference to the data value.

Definition at line 568 of file GC_Replicon_.hpp.

References CGC_Replicon_Base::m_Sequence, and CGC_Replicon_Base::ResetSequence().

SetSequences()

CGC_Sequence_Base::TSequences & CGC_Sequence_Base::SetSequences ( void  )

inline

Assign a value to Sequences data member.

Returns

Reference to the data value.

Definition at line 635 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::m_Sequences, and CGC_Sequence_Base::m_set_State.

Referenced by CGC_Assembly::x_Index().

SetSet()

CGC_Replicon_Base::C_Sequence::TSet & CGC_Replicon_Base::C_Sequence::SetSet ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 446 of file GC_Replicon_.hpp.

References eDoNotResetVariant.

SetSet_type() [1/2]

void CGC_AssemblySet_Base::SetSet_type ( CGC_AssemblySet_Base::TSet_type  value )

inline

Assign a value to Set_type data member.

Parameters

value

Value to assign

Definition at line 486 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::m_set_State, CGC_AssemblySet_Base::m_Set_type, and rapidjson::value.

SetSet_type() [2/2]

CGC_AssemblySet_Base::TSet_type & CGC_AssemblySet_Base::SetSet_type ( void  )

inline

Assign a value to Set_type data member.

Returns

Reference to the data value.

Definition at line 493 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::IsSetSet_type(), CGC_AssemblySet_Base::m_set_State, CGC_AssemblySet_Base::m_Set_type, and CSerialObject::UnassignedByte().

SetSimilarity() [1/4]

void CGC_DbTagAlias_Base::SetSimilarity ( CGC_DbTagAlias_Base::TSimilarity  value )

inline

Assign a value to Similarity data member.

Parameters

value

Value to assign

Definition at line 324 of file GC_DbTagAlias_.hpp.

References CGC_DbTagAlias_Base::m_set_State, CGC_DbTagAlias_Base::m_Similarity, and rapidjson::value.

SetSimilarity() [2/4]

void CGC_SeqIdAlias_Base::SetSimilarity ( CGC_SeqIdAlias_Base::TSimilarity  value )

inline

Assign a value to Similarity data member.

Parameters

value

Value to assign

Definition at line 400 of file GC_SeqIdAlias_.hpp.

References CGC_SeqIdAlias_Base::m_set_State, CGC_SeqIdAlias_Base::m_Similarity, and rapidjson::value.

SetSimilarity() [3/4]

CGC_DbTagAlias_Base::TSimilarity & CGC_DbTagAlias_Base::SetSimilarity ( void  )

inline

Assign a value to Similarity data member.

Returns

Reference to the data value.

Definition at line 331 of file GC_DbTagAlias_.hpp.

References CGC_DbTagAlias_Base::IsSetSimilarity(), CGC_DbTagAlias_Base::m_set_State, CGC_DbTagAlias_Base::m_Similarity, and CSerialObject::UnassignedByte().

SetSimilarity() [4/4]

CGC_SeqIdAlias_Base::TSimilarity & CGC_SeqIdAlias_Base::SetSimilarity ( void  )

inline

Assign a value to Similarity data member.

Returns

Reference to the data value.

Definition at line 407 of file GC_SeqIdAlias_.hpp.

References CGC_SeqIdAlias_Base::IsSetSimilarity(), CGC_SeqIdAlias_Base::m_set_State, CGC_SeqIdAlias_Base::m_Similarity, and CSerialObject::UnassignedByte().

SetSingle() [1/2]

void CGC_Replicon_Base::C_Sequence::SetSingle

(

TSingle &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 115 of file GC_Replicon_.cpp.

References CObject::AddReference(), and rapidjson::value.

SetSingle() [2/2]

CGC_Replicon_Base::C_Sequence::TSingle & CGC_Replicon_Base::C_Sequence::SetSingle

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 109 of file GC_Replicon_.cpp.

References eDoNotResetVariant.

SetState() [1/2]

void CGC_TaggedSequences_Base::SetState ( CGC_TaggedSequences_Base::TState  value )

inline

Assign a value to State data member.

Parameters

value

Value to assign

Definition at line 237 of file GC_TaggedSequences_.hpp.

References CGC_TaggedSequences_Base::m_set_State, CGC_TaggedSequences_Base::m_State, and rapidjson::value.

SetState() [2/2]

CGC_TaggedSequences_Base::TState & CGC_TaggedSequences_Base::SetState ( void  )

inline

Assign a value to State data member.

Returns

Reference to the data value.

Definition at line 244 of file GC_TaggedSequences_.hpp.

References CGC_TaggedSequences_Base::IsSetState(), CGC_TaggedSequences_Base::m_set_State, CGC_TaggedSequences_Base::m_State, and CSerialObject::UnassignedByte().

SetStats() [1/6]

void CGC_AssemblySet_Base::SetStats

(

CGC_AssemblySet_Base::TStats &

value

)

Assign a value to Stats data member.

Parameters

value

Reference to value.

Definition at line 126 of file GC_AssemblySet_.cpp.

References CGC_AssemblySet_Base::m_Stats, and rapidjson::value.

SetStats() [2/6]

void CGC_AssemblyUnit_Base::SetStats

(

CGC_AssemblyUnit_Base::TStats &

value

)

Assign a value to Stats data member.

Parameters

value

Reference to value.

Definition at line 104 of file GC_AssemblyUnit_.cpp.

References CGC_AssemblyUnit_Base::m_Stats, and rapidjson::value.

SetStats() [3/6]

void CGC_Sequence_Base::SetStats

(

CGC_Sequence_Base::TStats &

value

)

Assign a value to Stats data member.

Parameters

value

Reference to value.

Definition at line 138 of file GC_Sequence_.cpp.

References CGC_Sequence_Base::m_Stats, and rapidjson::value.

SetStats() [4/6]

CGC_AssemblySet_Base::TStats & CGC_AssemblySet_Base::SetStats

(

void

)

Assign a value to Stats data member.

Returns

Reference to the data value.

Definition at line 131 of file GC_AssemblySet_.cpp.

References CGC_AssemblySet_Base::m_Stats.

SetStats() [5/6]

CGC_AssemblyUnit_Base::TStats & CGC_AssemblyUnit_Base::SetStats

(

void

)

Assign a value to Stats data member.

Returns

Reference to the data value.

Definition at line 109 of file GC_AssemblyUnit_.cpp.

References CGC_AssemblyUnit_Base::m_Stats.

SetStats() [6/6]

CGC_Sequence_Base::TStats & CGC_Sequence_Base::SetStats

(

void

)

Assign a value to Stats data member.

Returns

Reference to the data value.

Definition at line 143 of file GC_Sequence_.cpp.

References CGC_Sequence_Base::m_Stats.

SetStats_category() [1/2]

void CGC_Scaf_stats_Base::SetStats_category ( CGC_Scaf_stats_Base::TStats_category  value )

inline

Assign a value to Stats_category data member.

Parameters

value

Value to assign

Definition at line 303 of file GC_Scaf_stats_.hpp.

References CGC_Scaf_stats_Base::m_set_State, CGC_Scaf_stats_Base::m_Stats_category, and rapidjson::value.

SetStats_category() [2/2]

CGC_Scaf_stats_Base::TStats_category & CGC_Scaf_stats_Base::SetStats_category ( void  )

inline

Assign a value to Stats_category data member.

Returns

Reference to the data value.

Definition at line 310 of file GC_Scaf_stats_.hpp.

References CGC_Scaf_stats_Base::IsSetStats_category(), CGC_Scaf_stats_Base::m_set_State, CGC_Scaf_stats_Base::m_Stats_category, and CSerialObject::UnassignedByte().

SetStructure() [1/2]

void CGC_Sequence_Base::SetStructure

(

CGC_Sequence_Base::TStructure &

value

)

Assign a value to Structure data member.

Parameters

value

Reference to value.

Definition at line 121 of file GC_Sequence_.cpp.

References CGC_Sequence_Base::m_Structure, and rapidjson::value.

SetStructure() [2/2]

CGC_Sequence_Base::TStructure & CGC_Sequence_Base::SetStructure

(

void

)

Assign a value to Structure data member.

Returns

Reference to the data value.

Definition at line 126 of file GC_Sequence_.cpp.

References CGC_Sequence_Base::m_Structure.

SetSubmitter_date() [1/2]

void CGC_AssemblyDesc_Base::SetSubmitter_date

(

CGC_AssemblyDesc_Base::TSubmitter_date &

value

)

Assign a value to Submitter_date data member.

Parameters

value

Reference to value.

Definition at line 147 of file GC_AssemblyDesc_.cpp.

References CGC_AssemblyDesc_Base::m_Submitter_date, and rapidjson::value.

SetSubmitter_date() [2/2]

CGC_AssemblyDesc_Base::TSubmitter_date & CGC_AssemblyDesc_Base::SetSubmitter_date

(

void

)

Assign a value to Submitter_date data member.

Returns

Reference to the data value.

Definition at line 152 of file GC_AssemblyDesc_.cpp.

References CGC_AssemblyDesc_Base::m_Submitter_date.

SetSubmitter_name() [1/3]

void CGC_AssemblyDesc_Base::SetSubmitter_name ( const TSubmitter_name &  value )

inline

Assign a value to Submitter_name data member.

Parameters

value

Value to assign

Definition at line 991 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_set_State, CGC_AssemblyDesc_Base::m_Submitter_name, and rapidjson::value.

SetSubmitter_name() [2/3]

void CGC_AssemblyDesc_Base::SetSubmitter_name ( CGC_AssemblyDesc_Base::TSubmitter_name &&  value )

inline

Definition at line 998 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_set_State, CGC_AssemblyDesc_Base::m_Submitter_name, and rapidjson::value.

SetSubmitter_name() [3/3]

CGC_AssemblyDesc_Base::TSubmitter_name & CGC_AssemblyDesc_Base::SetSubmitter_name ( void  )

inline

Assign a value to Submitter_name data member.

Returns

Reference to the data value.

Definition at line 1005 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetSubmitter_name(), CGC_AssemblyDesc_Base::m_set_State, CGC_AssemblyDesc_Base::m_Submitter_name, and CSerialObject::UnassignedString().

SetSubmitter_organization() [1/3]

void CGC_AssemblyDesc_Base::SetSubmitter_organization ( const TSubmitter_organization &  value )

inline

Assign a value to Submitter_organization data member.

Parameters

value

Value to assign

Definition at line 1603 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_set_State, CGC_AssemblyDesc_Base::m_Submitter_organization, and rapidjson::value.

SetSubmitter_organization() [2/3]

void CGC_AssemblyDesc_Base::SetSubmitter_organization ( CGC_AssemblyDesc_Base::TSubmitter_organization &&  value )

inline

Definition at line 1610 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_set_State, CGC_AssemblyDesc_Base::m_Submitter_organization, and rapidjson::value.

SetSubmitter_organization() [3/3]

CGC_AssemblyDesc_Base::TSubmitter_organization & CGC_AssemblyDesc_Base::SetSubmitter_organization ( void  )

inline

Assign a value to Submitter_organization data member.

Returns

Reference to the data value.

Definition at line 1617 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetSubmitter_organization(), CGC_AssemblyDesc_Base::m_set_State, CGC_AssemblyDesc_Base::m_Submitter_organization, and CSerialObject::UnassignedStringUTF8().

SetSynonyms()

CGC_AssemblyDesc_Base::TSynonyms & CGC_AssemblyDesc_Base::SetSynonyms ( void  )

inline

Assign a value to Synonyms data member.

Returns

Reference to the data value.

Definition at line 1389 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_set_State, and CGC_AssemblyDesc_Base::m_Synonyms.

SetUnaligned_scaf()

CGC_SequenceStats_Base::TUnaligned_scaf & CGC_SequenceStats_Base::SetUnaligned_scaf ( void  )

inline

Assign a value to Unaligned_scaf data member.

Returns

Reference to the data value.

Definition at line 475 of file GC_SequenceStats_.hpp.

References CGC_SequenceStats_Base::m_set_State, and CGC_SequenceStats_Base::m_Unaligned_scaf.

SetUnit() [1/2]

void CGC_Assembly_Base::SetUnit

(

CGC_Assembly_Base::TUnit &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 114 of file GC_Assembly_.cpp.

References CObject::AddReference(), CGC_Assembly_Base::e_Unit, CGC_Assembly_Base::m_choice, CGC_Assembly_Base::m_object, CGC_Assembly_Base::ResetSelection(), and rapidjson::value.

SetUnit() [2/2]

CGC_Assembly_Base::TUnit & CGC_Assembly_Base::SetUnit

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 108 of file GC_Assembly_.cpp.

References CGC_Assembly_Base::e_Unit, eDoNotResetVariant, CGC_Assembly_Base::m_object, and CGC_Assembly_Base::Select().

Referenced by GetAssebmlyDesc(), CTabularFormatter_AssemblyInfo::Print(), and CGC_Assembly::x_Index().

SetUnordered_scaf()

CGC_SequenceStats_Base::TUnordered_scaf & CGC_SequenceStats_Base::SetUnordered_scaf ( void  )

inline

Assign a value to Unordered_scaf data member.

Returns

Reference to the data value.

Definition at line 400 of file GC_SequenceStats_.hpp.

References CGC_SequenceStats_Base::m_set_State, and CGC_SequenceStats_Base::m_Unordered_scaf.

SetUnplaced_scaf()

CGC_SequenceStats_Base::TUnplaced_scaf & CGC_SequenceStats_Base::SetUnplaced_scaf ( void  )

inline

Assign a value to Unplaced_scaf data member.

Returns

Reference to the data value.

Definition at line 425 of file GC_SequenceStats_.hpp.

References CGC_SequenceStats_Base::m_set_State, and CGC_SequenceStats_Base::m_Unplaced_scaf.

SetUnplaced_stats()

CGC_AssemblyUnit_Base::TUnplaced_stats & CGC_AssemblyUnit_Base::SetUnplaced_stats ( void  )

inline

Assign a value to Unplaced_stats data member.

Returns

Reference to the data value.

Definition at line 637 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::m_set_State, and CGC_AssemblyUnit_Base::m_Unplaced_stats.

SetUnplaced_unlocalized_stats()

CGC_AssemblyUnit_Base::TUnplaced_unlocalized_stats & CGC_AssemblyUnit_Base::SetUnplaced_unlocalized_stats ( void  )

inline

Assign a value to Unplaced_unlocalized_stats data member.

Returns

Reference to the data value.

Definition at line 662 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::m_set_State, and CGC_AssemblyUnit_Base::m_Unplaced_unlocalized_stats.

SetValue() [1/5]

void CGC_Query_Base::SetValue ( const TValue &  value )

inline

Assign a value to Value data member.

Parameters

value

Value to assign

Definition at line 272 of file GC_Query_.hpp.

References CGC_Query_Base::m_set_State, CGC_Query_Base::m_Value, and rapidjson::value.

SetValue() [2/5]

void CGC_Query_Base::SetValue ( CGC_Query_Base::TValue &&  value )

inline

Definition at line 279 of file GC_Query_.hpp.

References CGC_Query_Base::m_set_State, CGC_Query_Base::m_Value, and rapidjson::value.

SetValue() [3/5]

void CGC_Scaf_stats_Base::SetValue ( CGC_Scaf_stats_Base::TValue  value )

inline

Assign a value to Value data member.

Parameters

value

Value to assign

Definition at line 350 of file GC_Scaf_stats_.hpp.

References CGC_Scaf_stats_Base::m_set_State, CGC_Scaf_stats_Base::m_Value, and rapidjson::value.

SetValue() [4/5]

CGC_Query_Base::TValue & CGC_Query_Base::SetValue ( void  )

inline

Assign a value to Value data member.

Returns

Reference to the data value.

Definition at line 286 of file GC_Query_.hpp.

References CGC_Query_Base::IsSetValue(), CGC_Query_Base::m_set_State, CGC_Query_Base::m_Value, and CSerialObject::UnassignedString().

SetValue() [5/5]

CGC_Scaf_stats_Base::TValue & CGC_Scaf_stats_Base::SetValue ( void  )

inline

Assign a value to Value data member.

Returns

Reference to the data value.

Definition at line 357 of file GC_Scaf_stats_.hpp.

References CGC_Scaf_stats_Base::IsSetValue(), CGC_Scaf_stats_Base::m_set_State, CGC_Scaf_stats_Base::m_Value, and CSerialObject::UnassignedByte().

SetWgs_acc_number() [1/2]

void CGC_AssemblyDesc_Base::SetWgs_acc_number ( CGC_AssemblyDesc_Base::TWgs_acc_number  value )

inline

Assign a value to Wgs_acc_number data member.

Parameters

value

Value to assign

Definition at line 1233 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_set_State, CGC_AssemblyDesc_Base::m_Wgs_acc_number, and rapidjson::value.

SetWgs_acc_number() [2/2]

CGC_AssemblyDesc_Base::TWgs_acc_number & CGC_AssemblyDesc_Base::SetWgs_acc_number ( void  )

inline

Assign a value to Wgs_acc_number data member.

Returns

Reference to the data value.

Definition at line 1240 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetWgs_acc_number(), CGC_AssemblyDesc_Base::m_set_State, CGC_AssemblyDesc_Base::m_Wgs_acc_number, and CSerialObject::UnassignedByte().

SetWgs_acc_prefix() [1/3]

void CGC_AssemblyDesc_Base::SetWgs_acc_prefix ( const TWgs_acc_prefix &  value )

inline

Assign a value to Wgs_acc_prefix data member.

Parameters

value

Value to assign

Definition at line 1179 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_set_State, CGC_AssemblyDesc_Base::m_Wgs_acc_prefix, and rapidjson::value.

SetWgs_acc_prefix() [2/3]

void CGC_AssemblyDesc_Base::SetWgs_acc_prefix ( CGC_AssemblyDesc_Base::TWgs_acc_prefix &&  value )

inline

Definition at line 1186 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::m_set_State, CGC_AssemblyDesc_Base::m_Wgs_acc_prefix, and rapidjson::value.

SetWgs_acc_prefix() [3/3]

CGC_AssemblyDesc_Base::TWgs_acc_prefix & CGC_AssemblyDesc_Base::SetWgs_acc_prefix ( void  )

inline

Assign a value to Wgs_acc_prefix data member.

Returns

Reference to the data value.

Definition at line 1193 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetWgs_acc_prefix(), CGC_AssemblyDesc_Base::m_set_State, CGC_AssemblyDesc_Base::m_Wgs_acc_prefix, and CSerialObject::UnassignedString().

ThrowInvalidSelection() [1/4]

void CGC_Assembly_Base::ThrowInvalidSelection

(

E_Choice

index

)

const

Throw 'InvalidSelection' exception.

Parameters

index

Expected selection.

Definition at line 97 of file GC_Assembly_.cpp.

References DIAG_COMPILE_INFO, CGC_Assembly_Base::m_choice, and CGC_Assembly_Base::sm_SelectionNames.

Referenced by CGC_Assembly_Base::CheckSelected().

ThrowInvalidSelection() [2/4]

void CGC_GenomicPart_Base::ThrowInvalidSelection

(

E_Choice

index

)

const

Throw 'InvalidSelection' exception.

Parameters

index

Expected selection.

Definition at line 103 of file GC_GenomicPart_.cpp.

References DIAG_COMPILE_INFO, CGC_GenomicPart_Base::m_choice, and CGC_GenomicPart_Base::sm_SelectionNames.

Referenced by CGC_GenomicPart_Base::CheckSelected().

ThrowInvalidSelection() [3/4]

void CGC_Replicon_Base::C_Sequence::ThrowInvalidSelection

(

E_Choice

index

)

const

Throw 'InvalidSelection' exception.

Parameters

index

Expected selection.

Definition at line 98 of file GC_Replicon_.cpp.

References DIAG_COMPILE_INFO.

ThrowInvalidSelection() [4/4]

void CGC_TypedSeqId_Base::ThrowInvalidSelection

(

E_Choice

index

)

const

Throw 'InvalidSelection' exception.

Parameters

index

Expected selection.

Definition at line 108 of file GC_TypedSeqId_.cpp.

References DIAG_COMPILE_INFO, CGC_TypedSeqId_Base::m_choice, and CGC_TypedSeqId_Base::sm_SelectionNames.

Referenced by CGC_TypedSeqId_Base::CheckSelected().

Which() [1/4]

CGC_Assembly_Base::E_Choice CGC_Assembly_Base::Which ( void  ) const

inline

Which variant is currently selected.

Returns

Choice state enumerator.

Definition at line 231 of file GC_Assembly_.hpp.

References CGC_Assembly_Base::m_choice.

Which() [2/4]

CGC_GenomicPart_Base::E_Choice CGC_GenomicPart_Base::Which ( void  ) const

inline

Which variant is currently selected.

Returns

Choice state enumerator.

Definition at line 257 of file GC_GenomicPart_.hpp.

References CGC_GenomicPart_Base::m_choice.

Which() [3/4]

CGC_Replicon_Base::C_Sequence::E_Choice CGC_Replicon_Base::C_Sequence::Which ( void  ) const

inline

Which variant is currently selected.

Returns

Choice state enumerator.

Definition at line 398 of file GC_Replicon_.hpp.

References CGC_Replicon_Base::C_Sequence::m_choice.

Which() [4/4]

CGC_TypedSeqId_Base::E_Choice CGC_TypedSeqId_Base::Which ( void  ) const

inline

Which variant is currently selected.

Returns

Choice state enumerator.

Definition at line 285 of file GC_TypedSeqId_.hpp.

References CGC_TypedSeqId_Base::m_choice.

Referenced by CSeq_loc_Mapper::x_IsUCSCRandomChr(), and CGC_Assembly_Parser::x_ParseGCSequence().

~C_Sequence()

CGC_Replicon_Base::C_Sequence::~C_Sequence

(

void

)

Definition at line 146 of file GC_Replicon_.cpp.

References CGC_Replicon_Base::Reset().

~CGC_Assemblies()

CGC_Assemblies::~CGC_Assemblies

(

void

)

Definition at line 50 of file GC_Assemblies.cpp.

~CGC_Assemblies_Base()

CGC_Assemblies_Base::~CGC_Assemblies_Base ( void  )

virtual

Definition at line 88 of file GC_Assemblies_.cpp.

~CGC_Assembly_Base()

CGC_Assembly_Base::~CGC_Assembly_Base ( void  )

virtual

Definition at line 166 of file GC_Assembly_.cpp.

References CGC_Assembly_Base::Reset().

~CGC_AssemblyDesc()

CGC_AssemblyDesc::~CGC_AssemblyDesc

(

void

)

Definition at line 50 of file GC_AssemblyDesc.cpp.

~CGC_AssemblyDesc_Base()

CGC_AssemblyDesc_Base::~CGC_AssemblyDesc_Base ( void  )

virtual

Definition at line 239 of file GC_AssemblyDesc_.cpp.

~CGC_AssemblySet_Base()

CGC_AssemblySet_Base::~CGC_AssemblySet_Base ( void  )

virtual

Definition at line 177 of file GC_AssemblySet_.cpp.

~CGC_AssemblyUnit_Base()

CGC_AssemblyUnit_Base::~CGC_AssemblyUnit_Base ( void  )

virtual

Definition at line 168 of file GC_AssemblyUnit_.cpp.

~CGC_DbTagAlias()

CGC_DbTagAlias::~CGC_DbTagAlias

(

void

)

Definition at line 50 of file GC_DbTagAlias.cpp.

~CGC_DbTagAlias_Base()

CGC_DbTagAlias_Base::~CGC_DbTagAlias_Base ( void  )

virtual

Definition at line 122 of file GC_DbTagAlias_.cpp.

~CGC_External_Seqid()

CGC_External_Seqid::~CGC_External_Seqid

(

void

)

Definition at line 50 of file GC_External_Seqid.cpp.

~CGC_External_Seqid_Base()

CGC_External_Seqid_Base::~CGC_External_Seqid_Base ( void  )

virtual

Definition at line 98 of file GC_External_Seqid_.cpp.

~CGC_Genome()

CGC_Genome::~CGC_Genome

(

void

)

Definition at line 50 of file GC_Genome.cpp.

~CGC_Genome_Base()

CGC_Genome_Base::~CGC_Genome_Base ( void  )

virtual

Definition at line 125 of file GC_Genome_.cpp.

~CGC_GenomicPart()

CGC_GenomicPart::~CGC_GenomicPart

(

void

)

Definition at line 50 of file GC_GenomicPart.cpp.

~CGC_GenomicPart_Base()

CGC_GenomicPart_Base::~CGC_GenomicPart_Base ( void  )

virtual

Definition at line 195 of file GC_GenomicPart_.cpp.

References CGC_GenomicPart_Base::Reset().

~CGC_Project()

CGC_Project::~CGC_Project

(

void

)

Definition at line 50 of file GC_Project.cpp.

~CGC_Project_Base()

CGC_Project_Base::~CGC_Project_Base ( void  )

virtual

Definition at line 81 of file GC_Project_.cpp.

~CGC_Query()

CGC_Query::~CGC_Query

(

void

)

Definition at line 50 of file GC_Query.cpp.

~CGC_Query_Base()

CGC_Query_Base::~CGC_Query_Base ( void  )

virtual

Definition at line 86 of file GC_Query_.cpp.

~CGC_Replicon_Base()

CGC_Replicon_Base::~CGC_Replicon_Base ( void  )

virtual

Definition at line 207 of file GC_Replicon_.cpp.

~CGC_Scaf_stats()

CGC_Scaf_stats::~CGC_Scaf_stats

(

void

)

Definition at line 50 of file GC_Scaf_stats.cpp.

~CGC_Scaf_stats_Base()

CGC_Scaf_stats_Base::~CGC_Scaf_stats_Base ( void  )

virtual

Definition at line 156 of file GC_Scaf_stats_.cpp.

~CGC_SeqIdAlias_Base()

CGC_SeqIdAlias_Base::~CGC_SeqIdAlias_Base ( void  )

virtual

Definition at line 141 of file GC_SeqIdAlias_.cpp.

~CGC_Sequence_Base()

CGC_Sequence_Base::~CGC_Sequence_Base ( void  )

virtual

Definition at line 198 of file GC_Sequence_.cpp.

~CGC_SequenceStats()

CGC_SequenceStats::~CGC_SequenceStats

(

void

)

Definition at line 50 of file GC_SequenceStats.cpp.

~CGC_SequenceStats_Base()

CGC_SequenceStats_Base::~CGC_SequenceStats_Base ( void  )

virtual

Definition at line 119 of file GC_SequenceStats_.cpp.

~CGC_TaggedSequences()

CGC_TaggedSequences::~CGC_TaggedSequences

(

void

)

Definition at line 50 of file GC_TaggedSequences.cpp.

~CGC_TaggedSequences_Base()

CGC_TaggedSequences_Base::~CGC_TaggedSequences_Base ( void  )

virtual

Definition at line 95 of file GC_TaggedSequences_.cpp.

~CGC_TypedSeqId()

CGC_TypedSeqId::~CGC_TypedSeqId

(

void

)

Definition at line 50 of file GC_TypedSeqId.cpp.

~CGC_TypedSeqId_Base()

CGC_TypedSeqId_Base::~CGC_TypedSeqId_Base ( void  )

virtual

Definition at line 223 of file GC_TypedSeqId_.cpp.

References CGC_TypedSeqId_Base::Reset().

Variable Documentation

union { ... }

m_Aligned_scaf

list< CRef< CGC_Scaf_stats > > CGC_SequenceStats_Base::m_Aligned_scaf

private

Definition at line 318 of file GC_SequenceStats_.hpp.

Referenced by CGC_SequenceStats_Base::GetAligned_scaf(), CGC_SequenceStats_Base::ResetAligned_scaf(), and CGC_SequenceStats_Base::SetAligned_scaf().

m_All_scaf

list< CRef< CGC_Scaf_stats > > CGC_SequenceStats_Base::m_All_scaf

private

Definition at line 314 of file GC_SequenceStats_.hpp.

Referenced by CGC_SequenceStats_Base::GetAll_scaf(), CGC_SequenceStats_Base::ResetAll_scaf(), and CGC_SequenceStats_Base::SetAll_scaf().

m_Annot [1/2]

list< CRef< CSeq_annot > > CGC_AssemblyDesc_Base::m_Annot

private

Definition at line 878 of file GC_AssemblyDesc_.hpp.

Referenced by CGC_AssemblyDesc_Base::GetAnnot(), CGC_AssemblyDesc_Base::ResetAnnot(), and CGC_AssemblyDesc_Base::SetAnnot().

m_Annot [2/2]

list< CRef< CSeq_annot > > CGC_Sequence_Base::m_Annot

private

Definition at line 498 of file GC_Sequence_.hpp.

Referenced by CGC_Sequence_Base::GetAnnot(), CGC_Sequence_Base::ResetAnnot(), and CGC_Sequence_Base::SetAnnot().

m_Assemblies

list< CRef< CGC_Assembly > > CGC_Assemblies_Base::m_Assemblies

private

Definition at line 178 of file GC_Assemblies_.hpp.

Referenced by CGC_Assemblies_Base::GetAssemblies(), CGC_Assemblies_Base::ResetAssemblies(), and CGC_Assemblies_Base::SetAssemblies().

m_choice [1/4]

E_Choice CGC_Assembly_Base::m_choice

private

Definition at line 212 of file GC_Assembly_.hpp.

Referenced by CGC_Assembly_Base::CheckSelected(), CGC_Assembly_Base::DoSelect(), CGC_Assembly_Base::IsAssembly_set(), CGC_Assembly_Base::IsUnit(), CGC_Assembly_Base::Reset(), CGC_Assembly_Base::ResetSelection(), CGC_Assembly_Base::SetAssembly_set(), CGC_Assembly_Base::SetUnit(), CGC_Assembly_Base::ThrowInvalidSelection(), and CGC_Assembly_Base::Which().

m_choice [2/4]

E_Choice CGC_GenomicPart_Base::m_choice

private

Definition at line 238 of file GC_GenomicPart_.hpp.

Referenced by CGC_GenomicPart_Base::CheckSelected(), CGC_GenomicPart_Base::DoSelect(), CGC_GenomicPart_Base::IsAssembly(), CGC_GenomicPart_Base::IsMol(), CGC_GenomicPart_Base::IsSeqs(), CGC_GenomicPart_Base::Reset(), CGC_GenomicPart_Base::ResetSelection(), CGC_GenomicPart_Base::SetAssembly(), CGC_GenomicPart_Base::SetMol(), CGC_GenomicPart_Base::SetSeqs(), CGC_GenomicPart_Base::ThrowInvalidSelection(), and CGC_GenomicPart_Base::Which().

m_choice [3/4]

E_Choice CGC_Replicon_Base::C_Sequence::m_choice

private

Definition at line 228 of file GC_Replicon_.hpp.

Referenced by CGC_Replicon_Base::C_Sequence::Reset(), and CGC_Replicon_Base::C_Sequence::Which().

m_choice [4/4]

E_Choice CGC_TypedSeqId_Base::m_choice

private

Definition at line 266 of file GC_TypedSeqId_.hpp.

Referenced by CGC_TypedSeqId_Base::CheckSelected(), CGC_TypedSeqId_Base::DoSelect(), CGC_TypedSeqId_Base::IsExternal(), CGC_TypedSeqId_Base::IsGenbank(), CGC_TypedSeqId_Base::IsPrivate(), CGC_TypedSeqId_Base::IsRefseq(), CGC_TypedSeqId_Base::Reset(), CGC_TypedSeqId_Base::ResetSelection(), CGC_TypedSeqId_Base::SetExternal(), CGC_TypedSeqId_Base::SetGenbank(), CGC_TypedSeqId_Base::SetPrivate(), CGC_TypedSeqId_Base::SetRefseq(), CGC_TypedSeqId_Base::ThrowInvalidSelection(), and CGC_TypedSeqId_Base::Which().

m_Chr_names

list< string > CGC_Genome_Base::m_Chr_names

private

Definition at line 299 of file GC_Genome_.hpp.

Referenced by CGC_Genome_Base::GetChr_names(), CGC_Genome_Base::ResetChr_names(), and CGC_Genome_Base::SetChr_names().

m_Class [1/2]

int CGC_AssemblySet_Base::m_Class

private

Definition at line 416 of file GC_AssemblySet_.hpp.

Referenced by CGC_AssemblySet_Base::GetClass(), CGC_AssemblySet_Base::ResetClass(), and CGC_AssemblySet_Base::SetClass().

m_Class [2/2]

int CGC_AssemblyUnit_Base::m_Class

private

Definition at line 427 of file GC_AssemblyUnit_.hpp.

Referenced by CGC_AssemblyUnit_Base::GetClass(), CGC_AssemblyUnit_Base::ResetClass(), and CGC_AssemblyUnit_Base::SetClass().

m_Coverage

double CGC_AssemblyDesc_Base::m_Coverage

private

Definition at line 883 of file GC_AssemblyDesc_.hpp.

Referenced by CGC_AssemblyDesc_Base::GetCoverage(), CGC_AssemblyDesc_Base::ResetCoverage(), and CGC_AssemblyDesc_Base::SetCoverage().

m_Desc [1/2]

CRef< TDesc > CGC_AssemblySet_Base::m_Desc

private

Definition at line 417 of file GC_AssemblySet_.hpp.

Referenced by CGC_AssemblySet_Base::GetDesc(), CGC_AssemblySet_Base::IsSetDesc(), CGC_AssemblySet_Base::ResetDesc(), and CGC_AssemblySet_Base::SetDesc().

m_Desc [2/2]

CRef< TDesc > CGC_AssemblyUnit_Base::m_Desc

private

Definition at line 428 of file GC_AssemblyUnit_.hpp.

Referenced by CGC_AssemblyUnit_Base::GetDesc(), CGC_AssemblyUnit_Base::IsSetDesc(), CGC_AssemblyUnit_Base::ResetDesc(), and CGC_AssemblyUnit_Base::SetDesc().

m_Descr [1/3]

CRef< TDescr > CGC_AssemblyDesc_Base::m_Descr

private

Definition at line 881 of file GC_AssemblyDesc_.hpp.

Referenced by CGC_AssemblyDesc_Base::GetDescr(), CGC_AssemblyDesc_Base::IsSetDescr(), CGC_AssemblyDesc_Base::ResetDescr(), and CGC_AssemblyDesc_Base::SetDescr().

m_Descr [2/3]

CRef< TDescr > CGC_Genome_Base::m_Descr

private

Definition at line 298 of file GC_Genome_.hpp.

Referenced by CGC_Genome_Base::GetDescr(), CGC_Genome_Base::IsSetDescr(), CGC_Genome_Base::ResetDescr(), and CGC_Genome_Base::SetDescr().

m_Descr [3/3]

CRef< TDescr > CGC_Sequence_Base::m_Descr

private

Definition at line 497 of file GC_Sequence_.hpp.

Referenced by CGC_Sequence_Base::GetDescr(), CGC_Sequence_Base::IsSetDescr(), CGC_Sequence_Base::ResetDescr(), and CGC_Sequence_Base::SetDescr().

m_Display_name

string CGC_AssemblyDesc_Base::m_Display_name

private

Definition at line 871 of file GC_AssemblyDesc_.hpp.

Referenced by CGC_AssemblyDesc_Base::GetDisplay_name(), CGC_AssemblyDesc_Base::ResetDisplay_name(), and CGC_AssemblyDesc_Base::SetDisplay_name().

m_External

string CGC_External_Seqid_Base::m_External

private

Definition at line 189 of file GC_External_Seqid_.hpp.

Referenced by CGC_External_Seqid_Base::GetExternal(), CGC_External_Seqid_Base::ResetExternal(), and CGC_External_Seqid_Base::SetExternal().

m_Filesafe_name

string CGC_AssemblyDesc_Base::m_Filesafe_name

private

Definition at line 873 of file GC_AssemblyDesc_.hpp.

Referenced by CGC_AssemblyDesc_Base::GetFilesafe_name(), CGC_AssemblyDesc_Base::ResetFilesafe_name(), and CGC_AssemblyDesc_Base::SetFilesafe_name().

m_Genbank

CRef< TGenbank > CGC_DbTagAlias_Base::m_Genbank

private

Definition at line 240 of file GC_DbTagAlias_.hpp.

Referenced by CGC_DbTagAlias_Base::GetGenbank(), CGC_DbTagAlias_Base::IsSetGenbank(), CGC_DbTagAlias_Base::ResetGenbank(), and CGC_DbTagAlias_Base::SetGenbank().

m_Gi

CRef< TGi > CGC_SeqIdAlias_Base::m_Gi

private

Definition at line 286 of file GC_SeqIdAlias_.hpp.

Referenced by CGC_SeqIdAlias_Base::GetGi(), CGC_SeqIdAlias_Base::IsSetGi(), CGC_SeqIdAlias_Base::ResetGi(), and CGC_SeqIdAlias_Base::SetGi().

m_Gpipe

CRef< TGpipe > CGC_SeqIdAlias_Base::m_Gpipe

private

Definition at line 285 of file GC_SeqIdAlias_.hpp.

Referenced by CGC_SeqIdAlias_Base::GetGpipe(), CGC_SeqIdAlias_Base::IsSetGpipe(), CGC_SeqIdAlias_Base::ResetGpipe(), and CGC_SeqIdAlias_Base::SetGpipe().

m_Id [1/4]

list< CRef< CDbtag > > CGC_AssemblySet_Base::m_Id

private

Definition at line 414 of file GC_AssemblySet_.hpp.

Referenced by CGC_AssemblySet_Base::GetId(), CGC_AssemblySet_Base::ResetId(), and CGC_AssemblySet_Base::SetId().

m_Id [2/4]

list< CRef< CDbtag > > CGC_AssemblyUnit_Base::m_Id

private

Definition at line 426 of file GC_AssemblyUnit_.hpp.

Referenced by CGC_AssemblyUnit_Base::GetId(), CGC_AssemblyUnit_Base::ResetId(), and CGC_AssemblyUnit_Base::SetId().

m_Id [3/4]

CRef< TId > CGC_External_Seqid_Base::m_Id

private

Definition at line 190 of file GC_External_Seqid_.hpp.

Referenced by CGC_External_Seqid_Base::GetId(), CGC_External_Seqid_Base::IsSetId(), CGC_External_Seqid_Base::ResetId(), and CGC_External_Seqid_Base::SetId().

m_Id [4/4]

list< CRef< CDbtag > > CGC_Genome_Base::m_Id

private

Definition at line 296 of file GC_Genome_.hpp.

Referenced by CGC_Genome_Base::GetId(), CGC_Genome_Base::ResetId(), and CGC_Genome_Base::SetId().

m_Local_name

string CGC_Replicon_Base::m_Local_name

private

Definition at line 384 of file GC_Replicon_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CGC_Replicon_Base::GetLocal_name(), CGC_Replicon_Base::ResetLocal_name(), and CGC_Replicon_Base::SetLocal_name().

m_Long_name

CStringUTF8 CGC_AssemblyDesc_Base::m_Long_name

private

Definition at line 872 of file GC_AssemblyDesc_.hpp.

Referenced by CGC_AssemblyDesc_Base::GetLong_name(), CGC_AssemblyDesc_Base::ResetLong_name(), and CGC_AssemblyDesc_Base::SetLong_name().

m_Mols

list< CRef< CGC_Replicon > > CGC_AssemblyUnit_Base::m_Mols

private

Definition at line 429 of file GC_AssemblyUnit_.hpp.

Referenced by CGC_AssemblyUnit_Base::GetMols(), CGC_AssemblyUnit_Base::ResetMols(), and CGC_AssemblyUnit_Base::SetMols().

m_More_assemblies

list< CRef< CGC_Assembly > > CGC_AssemblySet_Base::m_More_assemblies

private

Definition at line 419 of file GC_AssemblySet_.hpp.

Referenced by CGC_AssemblySet_Base::GetMore_assemblies(), CGC_AssemblySet_Base::ResetMore_assemblies(), and CGC_AssemblySet_Base::SetMore_assemblies().

m_Name [1/2]

string CGC_AssemblyDesc_Base::m_Name

private

Definition at line 869 of file GC_AssemblyDesc_.hpp.

Referenced by CGC_AssemblyDesc_Base::GetName(), CGC_AssemblyDesc_Base::ResetName(), and CGC_AssemblyDesc_Base::SetName().

m_Name [2/2]

string CGC_Replicon_Base::m_Name

private

Definition at line 383 of file GC_Replicon_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CGC_Replicon_Base::GetName(), CGC_Replicon_Base::ResetName(), and CGC_Replicon_Base::SetName().

m_object [1/5]

NCBI_NS_NCBI::CSerialObject* CGC_Assembly_Base::m_object

private

Definition at line 218 of file GC_Assembly_.hpp.

Referenced by CGC_Assembly_Base::DoSelect(), CGC_Assembly_Base::GetAssembly_set(), CGC_Assembly_Base::GetUnit(), CGC_Assembly_Base::ResetSelection(), CGC_Assembly_Base::SetAssembly_set(), and CGC_Assembly_Base::SetUnit().

m_object [2/5]

NCBI_NS_NCBI::CSerialObject* CGC_GenomicPart_Base::m_object

private

Definition at line 244 of file GC_GenomicPart_.hpp.

Referenced by CGC_GenomicPart_Base::DoSelect(), CGC_GenomicPart_Base::GetAssembly(), CGC_GenomicPart_Base::GetMol(), CGC_GenomicPart_Base::GetSeqs(), CGC_GenomicPart_Base::ResetSelection(), CGC_GenomicPart_Base::SetAssembly(), CGC_GenomicPart_Base::SetMol(), and CGC_GenomicPart_Base::SetSeqs().

m_object [3/5]

NCBI_NS_NCBI::CSerialObject* CGC_Replicon_Base::C_Sequence::m_object

Definition at line 236 of file GC_Replicon_.hpp.

[4/5]

NCBI_NS_NCBI::CSerialObject* { ... } ::m_object

Definition at line 236 of file GC_Replicon_.hpp.

m_object [5/5]

NCBI_NS_NCBI::CSerialObject* CGC_TypedSeqId_Base::m_object

private

Definition at line 272 of file GC_TypedSeqId_.hpp.

Referenced by CGC_TypedSeqId_Base::DoSelect(), CGC_TypedSeqId_Base::GetExternal(), CGC_TypedSeqId_Base::GetGenbank(), CGC_TypedSeqId_Base::GetPrivate(), CGC_TypedSeqId_Base::GetRefseq(), CGC_TypedSeqId_Base::ResetSelection(), CGC_TypedSeqId_Base::SetExternal(), CGC_TypedSeqId_Base::SetGenbank(), CGC_TypedSeqId_Base::SetPrivate(), and CGC_TypedSeqId_Base::SetRefseq().

m_Ordered_scaf

list< CRef< CGC_Scaf_stats > > CGC_SequenceStats_Base::m_Ordered_scaf

private

Definition at line 315 of file GC_SequenceStats_.hpp.

Referenced by CGC_SequenceStats_Base::GetOrdered_scaf(), CGC_SequenceStats_Base::ResetOrdered_scaf(), and CGC_SequenceStats_Base::SetOrdered_scaf().

m_Other_sequences

list< CRef< CGC_TaggedSequences > > CGC_AssemblyUnit_Base::m_Other_sequences

private

Definition at line 430 of file GC_AssemblyUnit_.hpp.

Referenced by CGC_AssemblyUnit_Base::GetOther_sequences(), CGC_AssemblyUnit_Base::ResetOther_sequences(), and CGC_AssemblyUnit_Base::SetOther_sequences().

m_Param

string CGC_Query_Base::m_Param

private

Definition at line 190 of file GC_Query_.hpp.

Referenced by CGC_Query_Base::GetParam(), CGC_Query_Base::ResetParam(), and CGC_Query_Base::SetParam().

m_Partial

bool CGC_AssemblyDesc_Base::m_Partial

private

Definition at line 882 of file GC_AssemblyDesc_.hpp.

Referenced by CGC_AssemblyDesc_Base::GetPartial(), CGC_AssemblyDesc_Base::ResetPartial(), and CGC_AssemblyDesc_Base::SetPartial().

m_Parts

list< CRef< CGC_GenomicPart > > CGC_Genome_Base::m_Parts

private

Definition at line 300 of file GC_Genome_.hpp.

Referenced by CGC_Genome_Base::GetParts(), CGC_Genome_Base::ResetParts(), and CGC_Genome_Base::SetParts().

m_Patch_type

int CGC_Sequence_Base::m_Patch_type

private

Definition at line 502 of file GC_Sequence_.hpp.

Referenced by CGC_Sequence_Base::GetPatch_type(), CGC_Sequence_Base::ResetPatch_type(), and CGC_Sequence_Base::SetPatch_type().

m_Primary_assembly

CRef< TPrimary_assembly > CGC_AssemblySet_Base::m_Primary_assembly

private

Definition at line 418 of file GC_AssemblySet_.hpp.

Referenced by CGC_AssemblySet_Base::GetPrimary_assembly(), CGC_AssemblySet_Base::IsSetPrimary_assembly(), CGC_AssemblySet_Base::ResetPrimary_assembly(), and CGC_AssemblySet_Base::SetPrimary_assembly().

m_Project_id

int CGC_Project_Base::m_Project_id

private

Definition at line 187 of file GC_Project_.hpp.

Referenced by CGC_Project_Base::GetProject_id(), CGC_Project_Base::ResetProject_id(), and CGC_Project_Base::SetProject_id().

m_Project_role

string CGC_Project_Base::m_Project_role

private

Definition at line 186 of file GC_Project_.hpp.

Referenced by CGC_Project_Base::GetProject_role(), CGC_Project_Base::ResetProject_role(), and CGC_Project_Base::SetProject_role().

m_Projects [1/2]

list< CRef< CGC_Project > > CGC_AssemblyDesc_Base::m_Projects

private

Definition at line 868 of file GC_AssemblyDesc_.hpp.

Referenced by CGC_AssemblyDesc_Base::GetProjects(), CGC_AssemblyDesc_Base::ResetProjects(), and CGC_AssemblyDesc_Base::SetProjects().

m_Projects [2/2]

list< CRef< CGC_Project > > CGC_Genome_Base::m_Projects

private

Definition at line 297 of file GC_Genome_.hpp.

Referenced by CGC_Genome_Base::GetProjects(), CGC_Genome_Base::ResetProjects(), and CGC_Genome_Base::SetProjects().

m_Public

CRef< TPublic > CGC_SeqIdAlias_Base::m_Public

private

Definition at line 284 of file GC_SeqIdAlias_.hpp.

Referenced by CGC_SeqIdAlias_Base::GetPublic(), CGC_SeqIdAlias_Base::IsSetPublic(), CGC_SeqIdAlias_Base::ResetPublic(), and CGC_SeqIdAlias_Base::SetPublic().

m_Query

list< CRef< CGC_Query > > CGC_Assemblies_Base::m_Query

private

Definition at line 177 of file GC_Assemblies_.hpp.

Referenced by CGC_Assemblies_Base::GetQuery(), CGC_Assemblies_Base::ResetQuery(), and CGC_Assemblies_Base::SetQuery().

m_Refseq

CRef< TRefseq > CGC_DbTagAlias_Base::m_Refseq

private

Definition at line 239 of file GC_DbTagAlias_.hpp.

Referenced by CGC_DbTagAlias_Base::GetRefseq(), CGC_DbTagAlias_Base::IsSetRefseq(), CGC_DbTagAlias_Base::ResetRefseq(), and CGC_DbTagAlias_Base::SetRefseq().

m_Release_level

int CGC_AssemblyDesc_Base::m_Release_level

private

Definition at line 884 of file GC_AssemblyDesc_.hpp.

Referenced by CGC_AssemblyDesc_Base::GetRelease_level(), CGC_AssemblyDesc_Base::ResetRelease_level(), and CGC_AssemblyDesc_Base::SetRelease_level().

m_Release_status

int CGC_AssemblyDesc_Base::m_Release_status

private

Definition at line 877 of file GC_AssemblyDesc_.hpp.

Referenced by CGC_AssemblyDesc_Base::GetRelease_status(), CGC_AssemblyDesc_Base::ResetRelease_status(), and CGC_AssemblyDesc_Base::SetRelease_status().

m_Release_type

int CGC_AssemblyDesc_Base::m_Release_type

private

Definition at line 876 of file GC_AssemblyDesc_.hpp.

Referenced by CGC_AssemblyDesc_Base::GetRelease_type(), CGC_AssemblyDesc_Base::ResetRelease_type(), and CGC_AssemblyDesc_Base::SetRelease_type().

m_Roles

list< int > CGC_Sequence_Base::m_Roles

private

Definition at line 503 of file GC_Sequence_.hpp.

Referenced by CGC_Sequence_Base::GetRoles(), CGC_Sequence_Base::ResetRoles(), and CGC_Sequence_Base::SetRoles().

m_Seq_id

CRef< TSeq_id > CGC_Sequence_Base::m_Seq_id

private

Definition at line 495 of file GC_Sequence_.hpp.

Referenced by CGC_Sequence_Base::GetSeq_id(), CGC_Sequence_Base::IsSetSeq_id(), CGC_Sequence_Base::ResetSeq_id(), and CGC_Sequence_Base::SetSeq_id().

m_Seq_id_synonyms

list< CRef< CGC_TypedSeqId > > CGC_Sequence_Base::m_Seq_id_synonyms

private

Definition at line 496 of file GC_Sequence_.hpp.

Referenced by CGC_Sequence_Base::GetSeq_id_synonyms(), CGC_Sequence_Base::ResetSeq_id_synonyms(), and CGC_Sequence_Base::SetSeq_id_synonyms().

m_Seqs

list< CRef< CGC_Sequence > > CGC_TaggedSequences_Base::m_Seqs

private

Definition at line 196 of file GC_TaggedSequences_.hpp.

Referenced by CGC_TaggedSequences_Base::GetSeqs(), CGC_TaggedSequences_Base::ResetSeqs(), and CGC_TaggedSequences_Base::SetSeqs().

m_Sequence

CRef< TSequence > CGC_Replicon_Base::m_Sequence

private

Definition at line 385 of file GC_Replicon_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CGC_Replicon_Base::GetSequence(), CGC_Replicon_Base::IsSetSequence(), CGC_Replicon_Base::ResetSequence(), and CGC_Replicon_Base::SetSequence().

m_Sequences

list< CRef< CGC_TaggedSequences > > CGC_Sequence_Base::m_Sequences

private

Definition at line 499 of file GC_Sequence_.hpp.

Referenced by CGC_Sequence_Base::GetSequences(), CGC_Sequence_Base::ResetSequences(), and CGC_Sequence_Base::SetSequences().

m_Set [1/2]

NCBI_NS_NCBI::CUnionBuffer<TSet> CGC_Replicon_Base::C_Sequence::m_Set

Definition at line 235 of file GC_Replicon_.hpp.

[2/2]

NCBI_NS_NCBI::CUnionBuffer<TSet> { ... } ::m_Set

Definition at line 235 of file GC_Replicon_.hpp.

m_set_State [1/15]

Uint4 CGC_Assemblies_Base::m_set_State[1]

private

Definition at line 176 of file GC_Assemblies_.hpp.

Referenced by CGC_Assemblies_Base::CGC_Assemblies_Base(), CGC_Assemblies_Base::IsSetAssemblies(), CGC_Assemblies_Base::IsSetQuery(), CGC_Assemblies_Base::ResetAssemblies(), CGC_Assemblies_Base::ResetQuery(), CGC_Assemblies_Base::SetAssemblies(), and CGC_Assemblies_Base::SetQuery().

m_set_State [2/15]

Uint4 CGC_AssemblySet_Base::m_set_State[1]

private

Definition at line 413 of file GC_AssemblySet_.hpp.

Referenced by CGC_AssemblySet_Base::CGC_AssemblySet_Base(), CGC_AssemblySet_Base::IsSetClass(), CGC_AssemblySet_Base::IsSetId(), CGC_AssemblySet_Base::IsSetMore_assemblies(), CGC_AssemblySet_Base::IsSetSet_type(), CGC_AssemblySet_Base::ResetClass(), CGC_AssemblySet_Base::ResetId(), CGC_AssemblySet_Base::ResetMore_assemblies(), CGC_AssemblySet_Base::ResetSet_type(), CGC_AssemblySet_Base::SetClass(), CGC_AssemblySet_Base::SetId(), CGC_AssemblySet_Base::SetMore_assemblies(), and CGC_AssemblySet_Base::SetSet_type().

m_set_State [3/15]

Uint4 CGC_AssemblyUnit_Base::m_set_State[1]

private

Definition at line 425 of file GC_AssemblyUnit_.hpp.

Referenced by CGC_AssemblyUnit_Base::CGC_AssemblyUnit_Base(), CGC_AssemblyUnit_Base::IsSetClass(), CGC_AssemblyUnit_Base::IsSetId(), CGC_AssemblyUnit_Base::IsSetMols(), CGC_AssemblyUnit_Base::IsSetOther_sequences(), CGC_AssemblyUnit_Base::IsSetUnplaced_stats(), CGC_AssemblyUnit_Base::IsSetUnplaced_unlocalized_stats(), CGC_AssemblyUnit_Base::ResetClass(), CGC_AssemblyUnit_Base::ResetId(), CGC_AssemblyUnit_Base::ResetMols(), CGC_AssemblyUnit_Base::ResetOther_sequences(), CGC_AssemblyUnit_Base::ResetUnplaced_stats(), CGC_AssemblyUnit_Base::ResetUnplaced_unlocalized_stats(), CGC_AssemblyUnit_Base::SetClass(), CGC_AssemblyUnit_Base::SetId(), CGC_AssemblyUnit_Base::SetMols(), CGC_AssemblyUnit_Base::SetOther_sequences(), CGC_AssemblyUnit_Base::SetUnplaced_stats(), and CGC_AssemblyUnit_Base::SetUnplaced_unlocalized_stats().

m_set_State [4/15]

Uint4 CGC_DbTagAlias_Base::m_set_State[1]

private

Definition at line 238 of file GC_DbTagAlias_.hpp.

Referenced by CGC_DbTagAlias_Base::CGC_DbTagAlias_Base(), CGC_DbTagAlias_Base::IsSetSimilarity(), CGC_DbTagAlias_Base::ResetSimilarity(), and CGC_DbTagAlias_Base::SetSimilarity().

m_set_State [5/15]

Uint4 CGC_External_Seqid_Base::m_set_State[1]

private

Definition at line 188 of file GC_External_Seqid_.hpp.

Referenced by CGC_External_Seqid_Base::CGC_External_Seqid_Base(), CGC_External_Seqid_Base::IsSetExternal(), CGC_External_Seqid_Base::ResetExternal(), and CGC_External_Seqid_Base::SetExternal().

m_set_State [6/15]

Uint4 CGC_Genome_Base::m_set_State[1]

private

Definition at line 295 of file GC_Genome_.hpp.

Referenced by CGC_Genome_Base::CGC_Genome_Base(), CGC_Genome_Base::IsSetChr_names(), CGC_Genome_Base::IsSetId(), CGC_Genome_Base::IsSetParts(), CGC_Genome_Base::IsSetProjects(), CGC_Genome_Base::ResetChr_names(), CGC_Genome_Base::ResetId(), CGC_Genome_Base::ResetParts(), CGC_Genome_Base::ResetProjects(), CGC_Genome_Base::SetChr_names(), CGC_Genome_Base::SetId(), CGC_Genome_Base::SetParts(), and CGC_Genome_Base::SetProjects().

m_set_State [7/15]

Uint4 CGC_Project_Base::m_set_State[1]

private

Definition at line 185 of file GC_Project_.hpp.

Referenced by CGC_Project_Base::CGC_Project_Base(), CGC_Project_Base::IsSetProject_id(), CGC_Project_Base::IsSetProject_role(), CGC_Project_Base::ResetProject_id(), CGC_Project_Base::ResetProject_role(), CGC_Project_Base::SetProject_id(), and CGC_Project_Base::SetProject_role().

m_set_State [8/15]

Uint4 CGC_Query_Base::m_set_State[1]

private

Definition at line 189 of file GC_Query_.hpp.

Referenced by CGC_Query_Base::CGC_Query_Base(), CGC_Query_Base::IsSetParam(), CGC_Query_Base::IsSetValue(), CGC_Query_Base::ResetParam(), CGC_Query_Base::ResetValue(), CGC_Query_Base::SetParam(), and CGC_Query_Base::SetValue().

m_set_State [9/15]

Uint4 CGC_Replicon_Base::m_set_State[1]

private

Definition at line 382 of file GC_Replicon_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CGC_Replicon_Base::CGC_Replicon_Base(), CGC_Replicon_Base::IsSetLocal_name(), CGC_Replicon_Base::IsSetName(), CGC_Replicon_Base::ResetLocal_name(), CGC_Replicon_Base::ResetName(), CGC_Replicon_Base::SetLocal_name(), and CGC_Replicon_Base::SetName().

m_set_State [10/15]

Uint4 CGC_Scaf_stats_Base::m_set_State[1]

private

Definition at line 260 of file GC_Scaf_stats_.hpp.

Referenced by CGC_Scaf_stats_Base::CGC_Scaf_stats_Base(), CGC_Scaf_stats_Base::IsSetStats_category(), CGC_Scaf_stats_Base::IsSetValue(), CGC_Scaf_stats_Base::ResetStats_category(), CGC_Scaf_stats_Base::ResetValue(), CGC_Scaf_stats_Base::SetStats_category(), and CGC_Scaf_stats_Base::SetValue().

m_set_State [11/15]

Uint4 CGC_SeqIdAlias_Base::m_set_State[1]

private

Definition at line 283 of file GC_SeqIdAlias_.hpp.

Referenced by CGC_SeqIdAlias_Base::CGC_SeqIdAlias_Base(), CGC_SeqIdAlias_Base::IsSetSimilarity(), CGC_SeqIdAlias_Base::ResetSimilarity(), and CGC_SeqIdAlias_Base::SetSimilarity().

m_set_State [12/15]

Uint4 CGC_Sequence_Base::m_set_State[1]

private

Definition at line 494 of file GC_Sequence_.hpp.

Referenced by CGC_Sequence_Base::CGC_Sequence_Base(), CGC_Sequence_Base::IsSetAnnot(), CGC_Sequence_Base::IsSetPatch_type(), CGC_Sequence_Base::IsSetRoles(), CGC_Sequence_Base::IsSetSeq_id_synonyms(), CGC_Sequence_Base::IsSetSequences(), CGC_Sequence_Base::ResetAnnot(), CGC_Sequence_Base::ResetPatch_type(), CGC_Sequence_Base::ResetRoles(), CGC_Sequence_Base::ResetSeq_id_synonyms(), CGC_Sequence_Base::ResetSequences(), CGC_Sequence_Base::SetAnnot(), CGC_Sequence_Base::SetPatch_type(), CGC_Sequence_Base::SetRoles(), CGC_Sequence_Base::SetSeq_id_synonyms(), and CGC_Sequence_Base::SetSequences().

m_set_State [13/15]

Uint4 CGC_SequenceStats_Base::m_set_State[1]

private

Definition at line 313 of file GC_SequenceStats_.hpp.

Referenced by CGC_SequenceStats_Base::CGC_SequenceStats_Base(), CGC_SequenceStats_Base::IsSetAligned_scaf(), CGC_SequenceStats_Base::IsSetAll_scaf(), CGC_SequenceStats_Base::IsSetOrdered_scaf(), CGC_SequenceStats_Base::IsSetUnaligned_scaf(), CGC_SequenceStats_Base::IsSetUnordered_scaf(), CGC_SequenceStats_Base::IsSetUnplaced_scaf(), CGC_SequenceStats_Base::ResetAligned_scaf(), CGC_SequenceStats_Base::ResetAll_scaf(), CGC_SequenceStats_Base::ResetOrdered_scaf(), CGC_SequenceStats_Base::ResetUnaligned_scaf(), CGC_SequenceStats_Base::ResetUnordered_scaf(), CGC_SequenceStats_Base::ResetUnplaced_scaf(), CGC_SequenceStats_Base::SetAligned_scaf(), CGC_SequenceStats_Base::SetAll_scaf(), CGC_SequenceStats_Base::SetOrdered_scaf(), CGC_SequenceStats_Base::SetUnaligned_scaf(), CGC_SequenceStats_Base::SetUnordered_scaf(), and CGC_SequenceStats_Base::SetUnplaced_scaf().

m_set_State [14/15]

Uint4 CGC_TaggedSequences_Base::m_set_State[1]

private

Definition at line 194 of file GC_TaggedSequences_.hpp.

Referenced by CGC_TaggedSequences_Base::CGC_TaggedSequences_Base(), CGC_TaggedSequences_Base::IsSetSeqs(), CGC_TaggedSequences_Base::IsSetState(), CGC_TaggedSequences_Base::ResetSeqs(), CGC_TaggedSequences_Base::ResetState(), CGC_TaggedSequences_Base::SetSeqs(), and CGC_TaggedSequences_Base::SetState().

m_set_State [15/15]

Uint4 CGC_AssemblyDesc_Base::m_set_State[2]

private

Definition at line 867 of file GC_AssemblyDesc_.hpp.

Referenced by CGC_AssemblyDesc_Base::CGC_AssemblyDesc_Base(), CGC_AssemblyDesc_Base::IsSetAnnot(), CGC_AssemblyDesc_Base::IsSetCoverage(), CGC_AssemblyDesc_Base::IsSetDisplay_name(), CGC_AssemblyDesc_Base::IsSetFilesafe_name(), CGC_AssemblyDesc_Base::IsSetLong_name(), CGC_AssemblyDesc_Base::IsSetName(), CGC_AssemblyDesc_Base::IsSetPartial(), CGC_AssemblyDesc_Base::IsSetProjects(), CGC_AssemblyDesc_Base::IsSetRelease_level(), CGC_AssemblyDesc_Base::IsSetRelease_status(), CGC_AssemblyDesc_Base::IsSetRelease_type(), CGC_AssemblyDesc_Base::IsSetSubmitter_name(), CGC_AssemblyDesc_Base::IsSetSubmitter_organization(), CGC_AssemblyDesc_Base::IsSetSynonyms(), CGC_AssemblyDesc_Base::IsSetWgs_acc_number(), CGC_AssemblyDesc_Base::IsSetWgs_acc_prefix(), CGC_AssemblyDesc_Base::ResetAnnot(), CGC_AssemblyDesc_Base::ResetCoverage(), CGC_AssemblyDesc_Base::ResetDisplay_name(), CGC_AssemblyDesc_Base::ResetFilesafe_name(), CGC_AssemblyDesc_Base::ResetLong_name(), CGC_AssemblyDesc_Base::ResetName(), CGC_AssemblyDesc_Base::ResetPartial(), CGC_AssemblyDesc_Base::ResetProjects(), CGC_AssemblyDesc_Base::ResetRelease_level(), CGC_AssemblyDesc_Base::ResetRelease_status(), CGC_AssemblyDesc_Base::ResetRelease_type(), CGC_AssemblyDesc_Base::ResetSubmitter_name(), CGC_AssemblyDesc_Base::ResetSubmitter_organization(), CGC_AssemblyDesc_Base::ResetSynonyms(), CGC_AssemblyDesc_Base::ResetWgs_acc_number(), CGC_AssemblyDesc_Base::ResetWgs_acc_prefix(), CGC_AssemblyDesc_Base::SetAnnot(), CGC_AssemblyDesc_Base::SetCoverage(), CGC_AssemblyDesc_Base::SetDisplay_name(), CGC_AssemblyDesc_Base::SetFilesafe_name(), CGC_AssemblyDesc_Base::SetLong_name(), CGC_AssemblyDesc_Base::SetName(), CGC_AssemblyDesc_Base::SetPartial(), CGC_AssemblyDesc_Base::SetProjects(), CGC_AssemblyDesc_Base::SetRelease_level(), CGC_AssemblyDesc_Base::SetRelease_status(), CGC_AssemblyDesc_Base::SetRelease_type(), CGC_AssemblyDesc_Base::SetSubmitter_name(), CGC_AssemblyDesc_Base::SetSubmitter_organization(), CGC_AssemblyDesc_Base::SetSynonyms(), CGC_AssemblyDesc_Base::SetWgs_acc_number(), and CGC_AssemblyDesc_Base::SetWgs_acc_prefix().

m_Set_type

int CGC_AssemblySet_Base::m_Set_type

private

Definition at line 415 of file GC_AssemblySet_.hpp.

Referenced by CGC_AssemblySet_Base::GetSet_type(), CGC_AssemblySet_Base::ResetSet_type(), and CGC_AssemblySet_Base::SetSet_type().

m_Similarity [1/2]

int CGC_DbTagAlias_Base::m_Similarity

private

Definition at line 241 of file GC_DbTagAlias_.hpp.

Referenced by CGC_DbTagAlias_Base::GetSimilarity(), CGC_DbTagAlias_Base::ResetSimilarity(), and CGC_DbTagAlias_Base::SetSimilarity().

m_Similarity [2/2]

int CGC_SeqIdAlias_Base::m_Similarity

private

Definition at line 287 of file GC_SeqIdAlias_.hpp.

Referenced by CGC_SeqIdAlias_Base::GetSimilarity(), CGC_SeqIdAlias_Base::ResetSimilarity(), and CGC_SeqIdAlias_Base::SetSimilarity().

m_State

int CGC_TaggedSequences_Base::m_State

private

Definition at line 195 of file GC_TaggedSequences_.hpp.

Referenced by CGC_TaggedSequences_Base::GetState(), CGC_TaggedSequences_Base::ResetState(), and CGC_TaggedSequences_Base::SetState().

m_Stats [1/3]

CRef< TStats > CGC_AssemblySet_Base::m_Stats

private

Definition at line 420 of file GC_AssemblySet_.hpp.

Referenced by CGC_AssemblySet_Base::GetStats(), CGC_AssemblySet_Base::IsSetStats(), CGC_AssemblySet_Base::ResetStats(), and CGC_AssemblySet_Base::SetStats().

m_Stats [2/3]

CRef< TStats > CGC_AssemblyUnit_Base::m_Stats

private

Definition at line 431 of file GC_AssemblyUnit_.hpp.

Referenced by CGC_AssemblyUnit_Base::GetStats(), CGC_AssemblyUnit_Base::IsSetStats(), CGC_AssemblyUnit_Base::ResetStats(), and CGC_AssemblyUnit_Base::SetStats().

m_Stats [3/3]

CRef< TStats > CGC_Sequence_Base::m_Stats

private

Definition at line 501 of file GC_Sequence_.hpp.

Referenced by CGC_Sequence_Base::GetStats(), CGC_Sequence_Base::IsSetStats(), CGC_Sequence_Base::ResetStats(), and CGC_Sequence_Base::SetStats().

m_Stats_category

int CGC_Scaf_stats_Base::m_Stats_category

private

Definition at line 261 of file GC_Scaf_stats_.hpp.

Referenced by CGC_Scaf_stats_Base::GetStats_category(), CGC_Scaf_stats_Base::ResetStats_category(), and CGC_Scaf_stats_Base::SetStats_category().

m_Structure

CRef< TStructure > CGC_Sequence_Base::m_Structure

private

Definition at line 500 of file GC_Sequence_.hpp.

Referenced by CGC_Sequence_Base::GetStructure(), CGC_Sequence_Base::IsSetStructure(), CGC_Sequence_Base::ResetStructure(), and CGC_Sequence_Base::SetStructure().

m_Submitter_date

CRef< TSubmitter_date > CGC_AssemblyDesc_Base::m_Submitter_date

private

Definition at line 880 of file GC_AssemblyDesc_.hpp.

Referenced by CGC_AssemblyDesc_Base::GetSubmitter_date(), CGC_AssemblyDesc_Base::IsSetSubmitter_date(), CGC_AssemblyDesc_Base::ResetSubmitter_date(), and CGC_AssemblyDesc_Base::SetSubmitter_date().

m_Submitter_name

string CGC_AssemblyDesc_Base::m_Submitter_name

private

Definition at line 870 of file GC_AssemblyDesc_.hpp.

Referenced by CGC_AssemblyDesc_Base::GetSubmitter_name(), CGC_AssemblyDesc_Base::ResetSubmitter_name(), and CGC_AssemblyDesc_Base::SetSubmitter_name().

m_Submitter_organization

CStringUTF8 CGC_AssemblyDesc_Base::m_Submitter_organization

private

Definition at line 885 of file GC_AssemblyDesc_.hpp.

Referenced by CGC_AssemblyDesc_Base::GetSubmitter_organization(), CGC_AssemblyDesc_Base::ResetSubmitter_organization(), and CGC_AssemblyDesc_Base::SetSubmitter_organization().

m_Synonyms

list< CRef< CGC_DbTagAlias > > CGC_AssemblyDesc_Base::m_Synonyms

private

Definition at line 879 of file GC_AssemblyDesc_.hpp.

Referenced by CGC_AssemblyDesc_Base::GetSynonyms(), CGC_AssemblyDesc_Base::ResetSynonyms(), and CGC_AssemblyDesc_Base::SetSynonyms().

m_Unaligned_scaf

list< CRef< CGC_Scaf_stats > > CGC_SequenceStats_Base::m_Unaligned_scaf

private

Definition at line 319 of file GC_SequenceStats_.hpp.

Referenced by CGC_SequenceStats_Base::GetUnaligned_scaf(), CGC_SequenceStats_Base::ResetUnaligned_scaf(), and CGC_SequenceStats_Base::SetUnaligned_scaf().

m_Unordered_scaf

list< CRef< CGC_Scaf_stats > > CGC_SequenceStats_Base::m_Unordered_scaf

private

Definition at line 316 of file GC_SequenceStats_.hpp.

Referenced by CGC_SequenceStats_Base::GetUnordered_scaf(), CGC_SequenceStats_Base::ResetUnordered_scaf(), and CGC_SequenceStats_Base::SetUnordered_scaf().

m_Unplaced_scaf

list< CRef< CGC_Scaf_stats > > CGC_SequenceStats_Base::m_Unplaced_scaf

private

Definition at line 317 of file GC_SequenceStats_.hpp.

Referenced by CGC_SequenceStats_Base::GetUnplaced_scaf(), CGC_SequenceStats_Base::ResetUnplaced_scaf(), and CGC_SequenceStats_Base::SetUnplaced_scaf().

m_Unplaced_stats

list< CRef< CGC_Scaf_stats > > CGC_AssemblyUnit_Base::m_Unplaced_stats

private

Definition at line 432 of file GC_AssemblyUnit_.hpp.

Referenced by CGC_AssemblyUnit_Base::GetUnplaced_stats(), CGC_AssemblyUnit_Base::ResetUnplaced_stats(), and CGC_AssemblyUnit_Base::SetUnplaced_stats().

m_Unplaced_unlocalized_stats

list< CRef< CGC_Scaf_stats > > CGC_AssemblyUnit_Base::m_Unplaced_unlocalized_stats

private

Definition at line 433 of file GC_AssemblyUnit_.hpp.

Referenced by CGC_AssemblyUnit_Base::GetUnplaced_unlocalized_stats(), CGC_AssemblyUnit_Base::ResetUnplaced_unlocalized_stats(), and CGC_AssemblyUnit_Base::SetUnplaced_unlocalized_stats().

m_Value [1/2]

string CGC_Query_Base::m_Value

private

Definition at line 191 of file GC_Query_.hpp.

Referenced by CGC_Query_Base::GetValue(), CGC_Query_Base::ResetValue(), and CGC_Query_Base::SetValue().

m_Value [2/2]

Uint8 CGC_Scaf_stats_Base::m_Value

private

Definition at line 262 of file GC_Scaf_stats_.hpp.

Referenced by CGC_Scaf_stats_Base::GetValue(), CGC_Scaf_stats_Base::ResetValue(), and CGC_Scaf_stats_Base::SetValue().

m_Wgs_acc_number

int CGC_AssemblyDesc_Base::m_Wgs_acc_number

private

Definition at line 875 of file GC_AssemblyDesc_.hpp.

Referenced by CGC_AssemblyDesc_Base::GetWgs_acc_number(), CGC_AssemblyDesc_Base::ResetWgs_acc_number(), and CGC_AssemblyDesc_Base::SetWgs_acc_number().

m_Wgs_acc_prefix

string CGC_AssemblyDesc_Base::m_Wgs_acc_prefix

private

Definition at line 874 of file GC_AssemblyDesc_.hpp.

Referenced by CGC_AssemblyDesc_Base::GetWgs_acc_prefix(), CGC_AssemblyDesc_Base::ResetWgs_acc_prefix(), and CGC_AssemblyDesc_Base::SetWgs_acc_prefix().

sm_SelectionNames [1/4]

const char *const CGC_Assembly_Base::sm_SelectionNames

staticprivate

Initial value:

= {
    "not set",
    "unit",
    "assembly-set"
}

Definition at line 216 of file GC_Assembly_.hpp.

Referenced by CGC_Assembly_Base::SelectionName(), and CGC_Assembly_Base::ThrowInvalidSelection().

sm_SelectionNames [2/4]

const char *const CGC_GenomicPart_Base::sm_SelectionNames

staticprivate

Initial value:

= {
    "not set",
    "assembly",
    "mol",
    "seqs"
}

Definition at line 242 of file GC_GenomicPart_.hpp.

Referenced by CGC_GenomicPart_Base::SelectionName(), and CGC_GenomicPart_Base::ThrowInvalidSelection().

sm_SelectionNames [3/4]

const char *const CGC_Replicon_Base::C_Sequence::sm_SelectionNames

staticprivate

Initial value:

= {
    "not set",
    "single",
    "set"
}

Definition at line 232 of file GC_Replicon_.hpp.

sm_SelectionNames [4/4]

const char *const CGC_TypedSeqId_Base::sm_SelectionNames

staticprivate

Initial value:

= {
    "not set",
    "genbank",
    "refseq",
    "private",
    "external"
}

Definition at line 270 of file GC_TypedSeqId_.hpp.

Referenced by CGC_TypedSeqId_Base::SelectionName(), and CGC_TypedSeqId_Base::ThrowInvalidSelection().