Code generated by DATATOOL from 'genome_collection.asn' (module 'NCBI-GenomeCollection')

Collaboration diagram for Code generated by DATATOOL from 'genome_collection.asn' (module 'NCBI-GenomeCollection'):

Classes
class	CGC_Assemblies
	CGC_Assemblies –. More...
class	CGC_Assemblies_Base
	CGC_Assemblies_Base –. More...
class	CGC_Assembly_Base
	A GC-Assembly is either a single assembly unit or it is a set of assemblies. More...
class	CGC_AssemblyDesc
	CGC_AssemblyDesc –. More...
class	CGC_AssemblyDesc_Base
	CGC_AssemblyDesc_Base –. More...
class	CGC_AssemblySet_Base
	CGC_AssemblySet_Base –. More...
class	CGC_AssemblyUnit_Base
	CGC_AssemblyUnit_Base –. More...
class	CGC_DbTagAlias
	CGC_DbTagAlias –. More...
class	CGC_DbTagAlias_Base
class	CGC_External_Seqid
	CGC_External_Seqid –. More...
class	CGC_External_Seqid_Base
	CGC_External_Seqid_Base –. More...
class	CGC_Genome
	CGC_Genome –. More...
class	CGC_Genome_Base
	CGC_Genome_Base –. More...
class	CGC_GenomicPart
	CGC_GenomicPart –. More...
class	CGC_GenomicPart_Base
	CGC_GenomicPart_Base –. More...
class	CGC_Project
	CGC_Project –. More...
class	CGC_Project_Base
	CGC_Project_Base –. More...
class	CGC_Query
	CGC_Query –. More...
class	CGC_Query_Base
	A GC-Assemblies is a mere set of assemblies. More...
class	CGC_Replicon_Base
	CGC_Replicon_Base –. More...
class	CGC_Replicon_Base::C_Sequence
	the sequence(s) representing this molecule in the case of 2L and 2R - the molecule is represented by several sequences, and there is no seq-id of "chr 2" as a whole. More...
class	CGC_Scaf_stats
	CGC_Scaf_stats –. More...
class	CGC_Scaf_stats_Base
	CGC_Scaf_stats_Base –. More...
class	CGC_SeqIdAlias_Base
	Seq-id-alias a sequence has multiple seq-ids - refseq, genbank, local and each one has both gi and accession.version We cannot provide them as simply a list of seq-ids since it will be unclear which gi goes with which accession, therefore we group the related ones as alias pair. More...
class	CGC_Sequence_Base
	GC-Sequence: Used for scaffolds, scaffold-sets and components in Gencoll terminology. More...
class	CGC_SequenceStats
	CGC_SequenceStats –. More...
class	CGC_SequenceStats_Base
	Stats of complex objects Used at assembly and chromosome levels. More...
class	CGC_TaggedSequences
	CGC_TaggedSequences –. More...
class	CGC_TaggedSequences_Base
	GC-TaggedSequences: set of sequences in a specific role. More...
class	CGC_TypedSeqId
	CGC_TypedSeqId –. More...
class	CGC_TypedSeqId_Base
	CGC_TypedSeqId_Base –. More...

Typedefs
typedef CGC_Assemblies_Base	CGC_Assemblies::Tparent
typedef CSerialObject	CGC_Assemblies_Base::Tparent
typedef list< CRef< CGC_Query > >	CGC_Assemblies_Base::TQuery
typedef list< CRef< CGC_Assembly > >	CGC_Assemblies_Base::TAssemblies
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CGC_Assemblies_Base::TmemberIndex
typedef CSerialObject	CGC_Assembly_Base::Tparent
typedef CGC_AssemblyUnit	CGC_Assembly_Base::TUnit
typedef CGC_AssemblySet	CGC_Assembly_Base::TAssembly_set
typedef CGC_AssemblyDesc_Base	CGC_AssemblyDesc::Tparent
typedef CSerialObject	CGC_AssemblyDesc_Base::Tparent
typedef list< CRef< CGC_Project > >	CGC_AssemblyDesc_Base::TProjects
typedef string	CGC_AssemblyDesc_Base::TName
typedef string	CGC_AssemblyDesc_Base::TSubmitter_name
typedef string	CGC_AssemblyDesc_Base::TDisplay_name
typedef CStringUTF8	CGC_AssemblyDesc_Base::TLong_name
typedef string	CGC_AssemblyDesc_Base::TFilesafe_name
typedef string	CGC_AssemblyDesc_Base::TWgs_acc_prefix
typedef int	CGC_AssemblyDesc_Base::TWgs_acc_number
typedef int	CGC_AssemblyDesc_Base::TRelease_type
typedef int	CGC_AssemblyDesc_Base::TRelease_status
typedef list< CRef< CSeq_annot > >	CGC_AssemblyDesc_Base::TAnnot
typedef list< CRef< CGC_DbTagAlias > >	CGC_AssemblyDesc_Base::TSynonyms
typedef CDate	CGC_AssemblyDesc_Base::TSubmitter_date
typedef CSeq_descr	CGC_AssemblyDesc_Base::TDescr
typedef bool	CGC_AssemblyDesc_Base::TPartial
typedef double	CGC_AssemblyDesc_Base::TCoverage
typedef int	CGC_AssemblyDesc_Base::TRelease_level
typedef CStringUTF8	CGC_AssemblyDesc_Base::TSubmitter_organization
typedef Tparent::CMemberIndex< E_memberIndex, 19 >	CGC_AssemblyDesc_Base::TmemberIndex
typedef CSerialObject	CGC_AssemblySet_Base::Tparent
typedef list< CRef< CDbtag > >	CGC_AssemblySet_Base::TId
typedef int	CGC_AssemblySet_Base::TSet_type
typedef int	CGC_AssemblySet_Base::TClass
typedef CGC_AssemblyDesc	CGC_AssemblySet_Base::TDesc
typedef CGC_Assembly	CGC_AssemblySet_Base::TPrimary_assembly
typedef list< CRef< CGC_Assembly > >	CGC_AssemblySet_Base::TMore_assemblies
typedef CGC_SequenceStats	CGC_AssemblySet_Base::TStats
typedef Tparent::CMemberIndex< E_memberIndex, 8 >	CGC_AssemblySet_Base::TmemberIndex
typedef CSerialObject	CGC_AssemblyUnit_Base::Tparent
typedef list< CRef< CDbtag > >	CGC_AssemblyUnit_Base::TId
typedef int	CGC_AssemblyUnit_Base::TClass
typedef CGC_AssemblyDesc	CGC_AssemblyUnit_Base::TDesc
typedef list< CRef< CGC_Replicon > >	CGC_AssemblyUnit_Base::TMols
typedef list< CRef< CGC_TaggedSequences > >	CGC_AssemblyUnit_Base::TOther_sequences
typedef CGC_SequenceStats	CGC_AssemblyUnit_Base::TStats
typedef list< CRef< CGC_Scaf_stats > >	CGC_AssemblyUnit_Base::TUnplaced_stats
typedef list< CRef< CGC_Scaf_stats > >	CGC_AssemblyUnit_Base::TUnplaced_unlocalized_stats
typedef Tparent::CMemberIndex< E_memberIndex, 9 >	CGC_AssemblyUnit_Base::TmemberIndex
typedef CGC_DbTagAlias_Base	CGC_DbTagAlias::Tparent
typedef CSerialObject	CGC_DbTagAlias_Base::Tparent
typedef CDbtag	CGC_DbTagAlias_Base::TRefseq
typedef CDbtag	CGC_DbTagAlias_Base::TGenbank
typedef int	CGC_DbTagAlias_Base::TSimilarity
typedef Tparent::CMemberIndex< E_memberIndex, 4 >	CGC_DbTagAlias_Base::TmemberIndex
typedef CGC_External_Seqid_Base	CGC_External_Seqid::Tparent
typedef CSerialObject	CGC_External_Seqid_Base::Tparent
typedef string	CGC_External_Seqid_Base::TExternal
typedef CSeq_id	CGC_External_Seqid_Base::TId
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CGC_External_Seqid_Base::TmemberIndex
typedef CGC_Genome_Base	CGC_Genome::Tparent
typedef CSerialObject	CGC_Genome_Base::Tparent
typedef list< CRef< CDbtag > >	CGC_Genome_Base::TId
typedef list< CRef< CGC_Project > >	CGC_Genome_Base::TProjects
typedef CSeq_descr	CGC_Genome_Base::TDescr
typedef list< string >	CGC_Genome_Base::TChr_names
typedef list< CRef< CGC_GenomicPart > >	CGC_Genome_Base::TParts
typedef Tparent::CMemberIndex< E_memberIndex, 6 >	CGC_Genome_Base::TmemberIndex
typedef CGC_GenomicPart_Base	CGC_GenomicPart::Tparent
typedef CSerialObject	CGC_GenomicPart_Base::Tparent
typedef CGC_Assembly	CGC_GenomicPart_Base::TAssembly
typedef CGC_Replicon	CGC_GenomicPart_Base::TMol
typedef CGC_Sequence	CGC_GenomicPart_Base::TSeqs
typedef CGC_Project_Base	CGC_Project::Tparent
typedef CSerialObject	CGC_Project_Base::Tparent
typedef string	CGC_Project_Base::TProject_role
typedef int	CGC_Project_Base::TProject_id
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CGC_Project_Base::TmemberIndex
typedef CGC_Query_Base	CGC_Query::Tparent
typedef CSerialObject	CGC_Query_Base::Tparent
typedef string	CGC_Query_Base::TParam
typedef string	CGC_Query_Base::TValue
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CGC_Query_Base::TmemberIndex
typedef CSerialObject	CGC_Replicon_Base::Tparent
typedef CSerialObject	CGC_Replicon_Base::C_Sequence::Tparent
typedef CGC_Sequence	CGC_Replicon_Base::C_Sequence::TSingle
typedef list< CRef< CGC_Sequence > >	CGC_Replicon_Base::C_Sequence::TSet
typedef string	CGC_Replicon_Base::TName
typedef string	CGC_Replicon_Base::TLocal_name
typedef C_Sequence	CGC_Replicon_Base::TSequence
typedef Tparent::CMemberIndex< E_memberIndex, 4 >	CGC_Replicon_Base::TmemberIndex
typedef CGC_Scaf_stats_Base	CGC_Scaf_stats::Tparent
typedef CSerialObject	CGC_Scaf_stats_Base::Tparent
typedef int	CGC_Scaf_stats_Base::TStats_category
typedef Uint8	CGC_Scaf_stats_Base::TValue
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CGC_Scaf_stats_Base::TmemberIndex
typedef CSerialObject	CGC_SeqIdAlias_Base::Tparent
typedef CSeq_id	CGC_SeqIdAlias_Base::TPublic
typedef CSeq_id	CGC_SeqIdAlias_Base::TGpipe
typedef CSeq_id	CGC_SeqIdAlias_Base::TGi
typedef int	CGC_SeqIdAlias_Base::TSimilarity
typedef Tparent::CMemberIndex< E_memberIndex, 5 >	CGC_SeqIdAlias_Base::TmemberIndex
typedef CSerialObject	CGC_Sequence_Base::Tparent
typedef CSeq_id	CGC_Sequence_Base::TSeq_id
typedef list< CRef< CGC_TypedSeqId > >	CGC_Sequence_Base::TSeq_id_synonyms
typedef CSeq_descr	CGC_Sequence_Base::TDescr
typedef list< CRef< CSeq_annot > >	CGC_Sequence_Base::TAnnot
typedef list< CRef< CGC_TaggedSequences > >	CGC_Sequence_Base::TSequences
typedef CDelta_ext	CGC_Sequence_Base::TStructure
typedef CGC_SequenceStats	CGC_Sequence_Base::TStats
typedef int	CGC_Sequence_Base::TPatch_type
typedef list< int >	CGC_Sequence_Base::TRoles
typedef Tparent::CMemberIndex< E_memberIndex, 10 >	CGC_Sequence_Base::TmemberIndex
typedef CGC_SequenceStats_Base	CGC_SequenceStats::Tparent
typedef CSerialObject	CGC_SequenceStats_Base::Tparent
typedef list< CRef< CGC_Scaf_stats > >	CGC_SequenceStats_Base::TAll_scaf
typedef list< CRef< CGC_Scaf_stats > >	CGC_SequenceStats_Base::TOrdered_scaf
typedef list< CRef< CGC_Scaf_stats > >	CGC_SequenceStats_Base::TUnordered_scaf
typedef list< CRef< CGC_Scaf_stats > >	CGC_SequenceStats_Base::TUnplaced_scaf
typedef list< CRef< CGC_Scaf_stats > >	CGC_SequenceStats_Base::TAligned_scaf
typedef list< CRef< CGC_Scaf_stats > >	CGC_SequenceStats_Base::TUnaligned_scaf
typedef Tparent::CMemberIndex< E_memberIndex, 7 >	CGC_SequenceStats_Base::TmemberIndex
typedef CGC_TaggedSequences_Base	CGC_TaggedSequences::Tparent
typedef CSerialObject	CGC_TaggedSequences_Base::Tparent
typedef int	CGC_TaggedSequences_Base::TState
typedef list< CRef< CGC_Sequence > >	CGC_TaggedSequences_Base::TSeqs
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CGC_TaggedSequences_Base::TmemberIndex
typedef CGC_TypedSeqId_Base	CGC_TypedSeqId::Tparent
typedef CSerialObject	CGC_TypedSeqId_Base::Tparent
typedef CGC_SeqIdAlias	CGC_TypedSeqId_Base::TGenbank
typedef CGC_SeqIdAlias	CGC_TypedSeqId_Base::TRefseq
typedef CSeq_id	CGC_TypedSeqId_Base::TPrivate
typedef CGC_External_Seqid	CGC_TypedSeqId_Base::TExternal

Enumerations
enum class	CGC_Assemblies_Base::E_memberIndex { CGC_Assemblies_Base::e__allMandatory = 0 , CGC_Assemblies_Base::e_query , CGC_Assemblies_Base::e_assemblies }
enum	CGC_Assembly_Base::E_Choice { CGC_Assembly_Base::e_not_set = 0 , CGC_Assembly_Base::e_Unit , CGC_Assembly_Base::e_Assembly_set }
	Choice variants. More...
enum	CGC_Assembly_Base::E_ChoiceStopper { CGC_Assembly_Base::e_MaxChoice = 3 }
	Maximum+1 value of the choice variant enumerator. More...
enum	CGC_AssemblyDesc_Base::ERelease_type { CGC_AssemblyDesc_Base::eRelease_type_genbank = 1 , CGC_AssemblyDesc_Base::eRelease_type_refseq = 2 }
	release type: RefSeq / GenBank. More...
enum	CGC_AssemblyDesc_Base::ERelease_status {   CGC_AssemblyDesc_Base::eRelease_status_new = 0 , CGC_AssemblyDesc_Base::eRelease_status_gpipe = 5 , CGC_AssemblyDesc_Base::eRelease_status_public = 10 , CGC_AssemblyDesc_Base::eRelease_status_suppressed = 15 ,   CGC_AssemblyDesc_Base::eRelease_status_hup = 100 , CGC_AssemblyDesc_Base::eRelease_status_withdrawn = 105 }
	release status (numeric values have gaps for possible additional states More...
enum	CGC_AssemblyDesc_Base::ERelease_level { CGC_AssemblyDesc_Base::eRelease_level_major = 0 , CGC_AssemblyDesc_Base::eRelease_level_patch = 1 , CGC_AssemblyDesc_Base::eRelease_level_minor = 2 , CGC_AssemblyDesc_Base::eRelease_level_other = 255 }
	release level: Most of releases are major More...
enum class	CGC_AssemblyDesc_Base::E_memberIndex {   CGC_AssemblyDesc_Base::e__allMandatory = 0 , CGC_AssemblyDesc_Base::e_projects , CGC_AssemblyDesc_Base::e_name , CGC_AssemblyDesc_Base::e_submitter_name ,   CGC_AssemblyDesc_Base::e_display_name , CGC_AssemblyDesc_Base::e_long_name , CGC_AssemblyDesc_Base::e_filesafe_name , CGC_AssemblyDesc_Base::e_wgs_acc_prefix ,   CGC_AssemblyDesc_Base::e_wgs_acc_number , CGC_AssemblyDesc_Base::e_release_type , CGC_AssemblyDesc_Base::e_release_status , CGC_AssemblyDesc_Base::e_annot ,   CGC_AssemblyDesc_Base::e_synonyms , CGC_AssemblyDesc_Base::e_submitter_date , CGC_AssemblyDesc_Base::e_descr , CGC_AssemblyDesc_Base::e_partial ,   CGC_AssemblyDesc_Base::e_coverage , CGC_AssemblyDesc_Base::e_release_level , CGC_AssemblyDesc_Base::e_submitter_organization }
enum	CGC_AssemblySet_Base::ESet_type { CGC_AssemblySet_Base::eSet_type_full_assembly = 0 , CGC_AssemblySet_Base::eSet_type_assembly_set = 100 , CGC_AssemblySet_Base::eSet_type_other = 255 }
	set type: Assembly-Sets can be of 2 categories More...
enum	CGC_AssemblySet_Base::EClass {   CGC_AssemblySet_Base::eClass_full_assembly = 0 , CGC_AssemblySet_Base::eClass_haploid = 1 , CGC_AssemblySet_Base::eClass_haploid_with_alt_loci = 2 , CGC_AssemblySet_Base::eClass_diploid = 3 ,   CGC_AssemblySet_Base::eClass_unresolved_diploid = 4 , CGC_AssemblySet_Base::eClass_alternate_haplotype = 5 , CGC_AssemblySet_Base::eClass_alternate_pseudohaplotype = 6 , CGC_AssemblySet_Base::eClass_annotation_target_set = 101 ,   CGC_AssemblySet_Base::eClass_analysis_set = 102 , CGC_AssemblySet_Base::eClass_other = 255 }
	'class' defines the semantics of how to interpret this item More...
enum class	CGC_AssemblySet_Base::E_memberIndex {   CGC_AssemblySet_Base::e__allMandatory = 0 , CGC_AssemblySet_Base::e_id , CGC_AssemblySet_Base::e_set_type , CGC_AssemblySet_Base::e_class ,   CGC_AssemblySet_Base::e_desc , CGC_AssemblySet_Base::e_primary_assembly , CGC_AssemblySet_Base::e_more_assemblies , CGC_AssemblySet_Base::e_stats }
enum	CGC_AssemblyUnit_Base::EClass { CGC_AssemblyUnit_Base::eClass_haploid_unit = 1 , CGC_AssemblyUnit_Base::eClass_alt_loci = 2 , CGC_AssemblyUnit_Base::eClass_assembly_patch = 3 , CGC_AssemblyUnit_Base::eClass_other = 255 }
	'class' defines the semantics of how to interpret this item More...
enum class	CGC_AssemblyUnit_Base::E_memberIndex {   CGC_AssemblyUnit_Base::e__allMandatory = 0 , CGC_AssemblyUnit_Base::e_id , CGC_AssemblyUnit_Base::e_class , CGC_AssemblyUnit_Base::e_desc ,   CGC_AssemblyUnit_Base::e_mols , CGC_AssemblyUnit_Base::e_other_sequences , CGC_AssemblyUnit_Base::e_stats , CGC_AssemblyUnit_Base::e_unplaced_stats ,   CGC_AssemblyUnit_Base::e_unplaced_unlocalized_stats }
enum	CGC_DbTagAlias_Base::ESimilarity { CGC_DbTagAlias_Base::eSimilarity_unknown = 0 , CGC_DbTagAlias_Base::eSimilarity_identical = 1 , CGC_DbTagAlias_Base::eSimilarity_different = 255 }
	Similarity: relationship between 2 assemblies represented by DbTags Can be expanded to multiple level of identicality can use bitmap to flag ambiguity between different identicality levels. More...
enum class	CGC_DbTagAlias_Base::E_memberIndex { CGC_DbTagAlias_Base::e__allMandatory = 0 , CGC_DbTagAlias_Base::e_refseq , CGC_DbTagAlias_Base::e_genbank , CGC_DbTagAlias_Base::e_similarity }
enum class	CGC_External_Seqid_Base::E_memberIndex { CGC_External_Seqid_Base::e__allMandatory = 0 , CGC_External_Seqid_Base::e_external , CGC_External_Seqid_Base::e_id }
enum class	CGC_Genome_Base::E_memberIndex {   CGC_Genome_Base::e__allMandatory = 0 , CGC_Genome_Base::e_id , CGC_Genome_Base::e_projects , CGC_Genome_Base::e_descr ,   CGC_Genome_Base::e_chr_names , CGC_Genome_Base::e_parts }
enum	CGC_GenomicPart_Base::E_Choice { CGC_GenomicPart_Base::e_not_set = 0 , CGC_GenomicPart_Base::e_Assembly , CGC_GenomicPart_Base::e_Mol , CGC_GenomicPart_Base::e_Seqs }
	Choice variants. More...
enum	CGC_GenomicPart_Base::E_ChoiceStopper { CGC_GenomicPart_Base::e_MaxChoice = 4 }
	Maximum+1 value of the choice variant enumerator. More...
enum class	CGC_Project_Base::E_memberIndex { CGC_Project_Base::e__allMandatory = 0 , CGC_Project_Base::e_project_role , CGC_Project_Base::e_project_id }
enum class	CGC_Query_Base::E_memberIndex { CGC_Query_Base::e__allMandatory = 0 , CGC_Query_Base::e_param , CGC_Query_Base::e_value }
enum	CGC_Replicon_Base::C_Sequence::E_Choice { CGC_Replicon_Base::C_Sequence::e_not_set = 0 , CGC_Replicon_Base::C_Sequence::e_Single , CGC_Replicon_Base::C_Sequence::e_Set }
	Choice variants. More...
enum	CGC_Replicon_Base::C_Sequence::E_ChoiceStopper { CGC_Replicon_Base::C_Sequence::e_MaxChoice = 3 }
	Maximum+1 value of the choice variant enumerator. More...
enum class	CGC_Replicon_Base::E_memberIndex { CGC_Replicon_Base::e__allMandatory = 0 , CGC_Replicon_Base::e_name , CGC_Replicon_Base::e_local_name , CGC_Replicon_Base::e_sequence }
enum	CGC_Scaf_stats_Base::EStats_category {   CGC_Scaf_stats_Base::eStats_category_replicon_count = 70 , CGC_Scaf_stats_Base::eStats_category_scaffold_count = 22 , CGC_Scaf_stats_Base::eStats_category_component_count = 23 , CGC_Scaf_stats_Base::eStats_category_component_span_count = 24 ,   CGC_Scaf_stats_Base::eStats_category_total_length = 1 , CGC_Scaf_stats_Base::eStats_category_ungapped_length = 2 , CGC_Scaf_stats_Base::eStats_category_min_gapped_scaf_length = 25 , CGC_Scaf_stats_Base::eStats_category_max_gapped_scaf_length = 26 ,   CGC_Scaf_stats_Base::eStats_category_min_ungapped_scaf_length = 27 , CGC_Scaf_stats_Base::eStats_category_max_ungapped_scaf_length = 28 , CGC_Scaf_stats_Base::eStats_category_active_finishing_bases = 3 , CGC_Scaf_stats_Base::eStats_category_draft_bases = 5 ,   CGC_Scaf_stats_Base::eStats_category_finished_bases = 7 , CGC_Scaf_stats_Base::eStats_category_whole_genome_finishing_bases = 9 , CGC_Scaf_stats_Base::eStats_category_other_sequences = 11 , CGC_Scaf_stats_Base::eStats_category_pre_draft = 13 ,   CGC_Scaf_stats_Base::eStats_category_wgs_bases = 15 , CGC_Scaf_stats_Base::eStats_category_bases_in_spanned_gaps = 17 , CGC_Scaf_stats_Base::eStats_category_n50 = 19 , CGC_Scaf_stats_Base::eStats_category_spanned_gaps = 20 ,   CGC_Scaf_stats_Base::eStats_category_unspanned_gaps = 21 , CGC_Scaf_stats_Base::eStats_category_bases_in_unspanned_gaps = 29 , CGC_Scaf_stats_Base::eStats_category_count_contig = 30 , CGC_Scaf_stats_Base::eStats_category_contig_n50 = 31 ,   CGC_Scaf_stats_Base::eStats_category_contig_L50 = 32 , CGC_Scaf_stats_Base::eStats_category_contig_n75 = 33 , CGC_Scaf_stats_Base::eStats_category_contig_n90 = 34 , CGC_Scaf_stats_Base::eStats_category_scaf_L50 = 35 ,   CGC_Scaf_stats_Base::eStats_category_scaf_n75 = 36 , CGC_Scaf_stats_Base::eStats_category_scaf_n90 = 37 , CGC_Scaf_stats_Base::eStats_category_gc_count = 38 , CGC_Scaf_stats_Base::eStats_category_atgc_count = 39 ,   CGC_Scaf_stats_Base::eStats_category_gc_perc = 40 , CGC_Scaf_stats_Base::eStats_category_is_there_unplaced_scaf = 72 , CGC_Scaf_stats_Base::eStats_category_count_singleton_unordered_scaffold = 73 , CGC_Scaf_stats_Base::eStats_category_count_chr_made_of_singleton_ordered_scaffold = 74 ,   CGC_Scaf_stats_Base::eStats_category_count_chr_with_single_component = 75 , CGC_Scaf_stats_Base::eStats_category_count_singleton_in_minus_orientation = 76 , CGC_Scaf_stats_Base::eStats_category_count_unknown_gaps = 80 , CGC_Scaf_stats_Base::eStats_category_count_implicit_scaf_src_name = 82 ,   CGC_Scaf_stats_Base::eStats_category_count_explicit_scaf_src_name = 83 , CGC_Scaf_stats_Base::eStats_category_all_chr_has_single_component = 84 , CGC_Scaf_stats_Base::eStats_category_count_scaf_with_terminal_gaps = 85 , CGC_Scaf_stats_Base::eStats_category_count_chr_with_terminal_gaps = 86 ,   CGC_Scaf_stats_Base::eStats_category_count_uniq_components = 87 , CGC_Scaf_stats_Base::eStats_category_count_uniq_component_diff_from_last_release = 88 , CGC_Scaf_stats_Base::eStats_category_count_chromosome_types = 89 , CGC_Scaf_stats_Base::eStats_category_count_chromosome_terminal_gap_types = 90 ,   CGC_Scaf_stats_Base::eStats_category_count_dropped_components = 91 , CGC_Scaf_stats_Base::eStats_category_count_non_chromosome_replicon = 92 , CGC_Scaf_stats_Base::eStats_category_count_assembly_units = 93 , CGC_Scaf_stats_Base::eStats_category_count_alt_loci_units = 94 ,   CGC_Scaf_stats_Base::eStats_category_count_fixed_patches = 95 , CGC_Scaf_stats_Base::eStats_category_count_novel_patches = 96 , CGC_Scaf_stats_Base::eStats_category_count_regions = 97 , CGC_Scaf_stats_Base::eStats_category_count_patches = 98 ,   CGC_Scaf_stats_Base::eStats_category_count_par_regions = 99 , CGC_Scaf_stats_Base::eStats_category_count_genomic_regions = 100 , CGC_Scaf_stats_Base::eStats_category_count_chromosome_replicons = 101 , CGC_Scaf_stats_Base::eStats_category_assembly_status = 102 ,   CGC_Scaf_stats_Base::eStats_category_net_count_scaffold = 103 , CGC_Scaf_stats_Base::eStats_category_net_count_component = 104 , CGC_Scaf_stats_Base::eStats_category_count_regions_contain_alt_loci = 105 , CGC_Scaf_stats_Base::eStats_category_count_regions_contain_fix_patch = 106 ,   CGC_Scaf_stats_Base::eStats_category_count_regions_contain_novel_patch = 107 , CGC_Scaf_stats_Base::eStats_category_count_fix_patch_with_alignment = 108 , CGC_Scaf_stats_Base::eStats_category_count_novel_patch_with_alignment = 109 , CGC_Scaf_stats_Base::eStats_category_count_alt_scaf_with_alignment = 110 ,   CGC_Scaf_stats_Base::eStats_category_count_alt_loci_scaf = 111 , CGC_Scaf_stats_Base::eStats_category_count_real_scaffolds = 112 , CGC_Scaf_stats_Base::eStats_category_top_level_count = 113 , CGC_Scaf_stats_Base::eStats_category_total_gap_length = 114 ,   CGC_Scaf_stats_Base::eStats_category_count_replicons_without_ordered_scaf = 115 , CGC_Scaf_stats_Base::eStats_category_other = 255 }
	NOTE: These values equal to the stats_cd values in CodeStatistics table in GenomeColl. More...
enum class	CGC_Scaf_stats_Base::E_memberIndex { CGC_Scaf_stats_Base::e__allMandatory = 0 , CGC_Scaf_stats_Base::e_stats_category , CGC_Scaf_stats_Base::e_value }
enum	CGC_SeqIdAlias_Base::ESimilarity { CGC_SeqIdAlias_Base::eSimilarity_unknown = 0 , CGC_SeqIdAlias_Base::eSimilarity_identical = 1 , CGC_SeqIdAlias_Base::eSimilarity_different = 255 }
enum class	CGC_SeqIdAlias_Base::E_memberIndex {   CGC_SeqIdAlias_Base::e__allMandatory = 0 , CGC_SeqIdAlias_Base::e_public , CGC_SeqIdAlias_Base::e_gpipe , CGC_SeqIdAlias_Base::e_gi ,   CGC_SeqIdAlias_Base::e_similarity }
enum	CGC_Sequence_Base::EPatch_type { CGC_Sequence_Base::ePatch_type_novel = 0 , CGC_Sequence_Base::ePatch_type_fix = 1 , CGC_Sequence_Base::ePatch_type_other = 255 }
enum class	CGC_Sequence_Base::E_memberIndex {   CGC_Sequence_Base::e__allMandatory = 0 , CGC_Sequence_Base::e_seq_id , CGC_Sequence_Base::e_seq_id_synonyms , CGC_Sequence_Base::e_descr ,   CGC_Sequence_Base::e_annot , CGC_Sequence_Base::e_sequences , CGC_Sequence_Base::e_structure , CGC_Sequence_Base::e_stats ,   CGC_Sequence_Base::e_patch_type , CGC_Sequence_Base::e_roles }
enum	EGC_SequenceRole {   eGC_SequenceRole_chromosome = 2 , eGC_SequenceRole_scaffold = 3 , eGC_SequenceRole_component = 4 , eGC_SequenceRole_top_level = 10 ,   eGC_SequenceRole_pseudo_scaffold = 20 , eGC_SequenceRole_submitter_pseudo_scaffold = 21 }
	sequence-role: what role(s) does this sequence have in the assembly a sequence may have more than one role. More...
enum class	CGC_SequenceStats_Base::E_memberIndex {   CGC_SequenceStats_Base::e__allMandatory = 0 , CGC_SequenceStats_Base::e_all_scaf , CGC_SequenceStats_Base::e_ordered_scaf , CGC_SequenceStats_Base::e_unordered_scaf ,   CGC_SequenceStats_Base::e_unplaced_scaf , CGC_SequenceStats_Base::e_aligned_scaf , CGC_SequenceStats_Base::e_unaligned_scaf }
enum	CGC_TaggedSequences_Base::EState {   CGC_TaggedSequences_Base::eState_not_set = 0 , CGC_TaggedSequences_Base::eState_placed = 1 , CGC_TaggedSequences_Base::eState_unlocalized = 2 , CGC_TaggedSequences_Base::eState_unplaced = 3 ,   CGC_TaggedSequences_Base::eState_aligned = 4 , CGC_TaggedSequences_Base::eState_bits = 6 }
enum class	CGC_TaggedSequences_Base::E_memberIndex { CGC_TaggedSequences_Base::e__allMandatory = 0 , CGC_TaggedSequences_Base::e_state , CGC_TaggedSequences_Base::e_seqs }
enum	CGC_TypedSeqId_Base::E_Choice {   CGC_TypedSeqId_Base::e_not_set = 0 , CGC_TypedSeqId_Base::e_Genbank , CGC_TypedSeqId_Base::e_Refseq , CGC_TypedSeqId_Base::e_Private ,   CGC_TypedSeqId_Base::e_External }
	Choice variants. More...
enum	CGC_TypedSeqId_Base::E_ChoiceStopper { CGC_TypedSeqId_Base::e_MaxChoice = 5 }
	Maximum+1 value of the choice variant enumerator. More...

Functions
	CGC_Assemblies::CGC_Assemblies (void)
	CGC_Assemblies::~CGC_Assemblies (void)
	CGC_Assemblies::CGC_Assemblies (const CGC_Assemblies &value)
CGC_Assemblies &	CGC_Assemblies::operator= (const CGC_Assemblies &value)
	CGC_Assemblies_Base::CGC_Assemblies_Base (void)
virtual	CGC_Assemblies_Base::~CGC_Assemblies_Base (void)
	CGC_Assemblies_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CGC_Assemblies_Base::IsSetQuery (void) const
	Check if a value has been assigned to Query data member. More...
bool	CGC_Assemblies_Base::CanGetQuery (void) const
	Check if it is safe to call GetQuery method. More...
void	CGC_Assemblies_Base::ResetQuery (void)
	Reset Query data member. More...
const TQuery &	CGC_Assemblies_Base::GetQuery (void) const
	Get the Query member data. More...
TQuery &	CGC_Assemblies_Base::SetQuery (void)
	Assign a value to Query data member. More...
bool	CGC_Assemblies_Base::IsSetAssemblies (void) const
	Check if a value has been assigned to Assemblies data member. More...
bool	CGC_Assemblies_Base::CanGetAssemblies (void) const
	Check if it is safe to call GetAssemblies method. More...
void	CGC_Assemblies_Base::ResetAssemblies (void)
	Reset Assemblies data member. More...
const TAssemblies &	CGC_Assemblies_Base::GetAssemblies (void) const
	Get the Assemblies member data. More...
TAssemblies &	CGC_Assemblies_Base::SetAssemblies (void)
	Assign a value to Assemblies data member. More...
virtual void	CGC_Assemblies_Base::Reset (void)
	Reset the whole object. More...
	CGC_Assemblies_Base::CGC_Assemblies_Base (const CGC_Assemblies_Base &)
CGC_Assemblies_Base &	CGC_Assemblies_Base::operator= (const CGC_Assemblies_Base &)
	CGC_Assembly_Base::CGC_Assembly_Base (void)
virtual	CGC_Assembly_Base::~CGC_Assembly_Base (void)
	CGC_Assembly_Base::DECLARE_INTERNAL_TYPE_INFO ()
virtual void	CGC_Assembly_Base::Reset (void)
	Reset the whole object. More...
virtual void	CGC_Assembly_Base::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CGC_Assembly_Base::Which (void) const
	Which variant is currently selected. More...
void	CGC_Assembly_Base::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CGC_Assembly_Base::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CGC_Assembly_Base::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CGC_Assembly_Base::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CGC_Assembly_Base::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CGC_Assembly_Base::IsUnit (void) const
	Check if variant Unit is selected. More...
const TUnit &	CGC_Assembly_Base::GetUnit (void) const
	Get the variant data. More...
TUnit &	CGC_Assembly_Base::SetUnit (void)
	Select the variant. More...
void	CGC_Assembly_Base::SetUnit (TUnit &value)
	Select the variant and set its data. More...
bool	CGC_Assembly_Base::IsAssembly_set (void) const
	Check if variant Assembly_set is selected. More...
const TAssembly_set &	CGC_Assembly_Base::GetAssembly_set (void) const
	Get the variant data. More...
TAssembly_set &	CGC_Assembly_Base::SetAssembly_set (void)
	Select the variant. More...
void	CGC_Assembly_Base::SetAssembly_set (TAssembly_set &value)
	Select the variant and set its data. More...
	CGC_Assembly_Base::CGC_Assembly_Base (const CGC_Assembly_Base &)
CGC_Assembly_Base &	CGC_Assembly_Base::operator= (const CGC_Assembly_Base &)
void	CGC_Assembly_Base::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
	CGC_AssemblyDesc::CGC_AssemblyDesc (void)
	CGC_AssemblyDesc::~CGC_AssemblyDesc (void)
	CGC_AssemblyDesc::CGC_AssemblyDesc (const CGC_AssemblyDesc &value)
CGC_AssemblyDesc &	CGC_AssemblyDesc::operator= (const CGC_AssemblyDesc &value)
	CGC_AssemblyDesc_Base::CGC_AssemblyDesc_Base (void)
virtual	CGC_AssemblyDesc_Base::~CGC_AssemblyDesc_Base (void)
	CGC_AssemblyDesc_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CGC_AssemblyDesc_Base::ERelease_type (void)
	Access to ERelease_type's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CGC_AssemblyDesc_Base::ERelease_status (void)
	Access to ERelease_status's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CGC_AssemblyDesc_Base::ERelease_level (void)
	Access to ERelease_level's attributes (values, names) as defined in spec. More...
bool	CGC_AssemblyDesc_Base::IsSetProjects (void) const
	project ID for this genome this is the ID for this asssembly and may reflect the submitter/source Check if a value has been assigned to Projects data member. More...
bool	CGC_AssemblyDesc_Base::CanGetProjects (void) const
	Check if it is safe to call GetProjects method. More...
void	CGC_AssemblyDesc_Base::ResetProjects (void)
	Reset Projects data member. More...
const TProjects &	CGC_AssemblyDesc_Base::GetProjects (void) const
	Get the Projects member data. More...
TProjects &	CGC_AssemblyDesc_Base::SetProjects (void)
	Assign a value to Projects data member. More...
bool	CGC_AssemblyDesc_Base::IsSetName (void) const
	Names of the assembly Check if a value has been assigned to Name data member. More...
bool	CGC_AssemblyDesc_Base::CanGetName (void) const
	Check if it is safe to call GetName method. More...
void	CGC_AssemblyDesc_Base::ResetName (void)
	Reset Name data member. More...
const TName &	CGC_AssemblyDesc_Base::GetName (void) const
	Get the Name member data. More...
void	CGC_AssemblyDesc_Base::SetName (const TName &value)
	Assign a value to Name data member. More...
void	CGC_AssemblyDesc_Base::SetName (TName &&value)
TName &	CGC_AssemblyDesc_Base::SetName (void)
	Assign a value to Name data member. More...
bool	CGC_AssemblyDesc_Base::IsSetSubmitter_name (void) const
	Check if a value has been assigned to Submitter_name data member. More...
bool	CGC_AssemblyDesc_Base::CanGetSubmitter_name (void) const
	Check if it is safe to call GetSubmitter_name method. More...
void	CGC_AssemblyDesc_Base::ResetSubmitter_name (void)
	Reset Submitter_name data member. More...
const TSubmitter_name &	CGC_AssemblyDesc_Base::GetSubmitter_name (void) const
	Get the Submitter_name member data. More...
void	CGC_AssemblyDesc_Base::SetSubmitter_name (const TSubmitter_name &value)
	Assign a value to Submitter_name data member. More...
void	CGC_AssemblyDesc_Base::SetSubmitter_name (TSubmitter_name &&value)
TSubmitter_name &	CGC_AssemblyDesc_Base::SetSubmitter_name (void)
	Assign a value to Submitter_name data member. More...
bool	CGC_AssemblyDesc_Base::IsSetDisplay_name (void) const
	Check if a value has been assigned to Display_name data member. More...
bool	CGC_AssemblyDesc_Base::CanGetDisplay_name (void) const
	Check if it is safe to call GetDisplay_name method. More...
void	CGC_AssemblyDesc_Base::ResetDisplay_name (void)
	Reset Display_name data member. More...
const TDisplay_name &	CGC_AssemblyDesc_Base::GetDisplay_name (void) const
	Get the Display_name member data. More...
void	CGC_AssemblyDesc_Base::SetDisplay_name (const TDisplay_name &value)
	Assign a value to Display_name data member. More...
void	CGC_AssemblyDesc_Base::SetDisplay_name (TDisplay_name &&value)
TDisplay_name &	CGC_AssemblyDesc_Base::SetDisplay_name (void)
	Assign a value to Display_name data member. More...
bool	CGC_AssemblyDesc_Base::IsSetLong_name (void) const
	Check if a value has been assigned to Long_name data member. More...
bool	CGC_AssemblyDesc_Base::CanGetLong_name (void) const
	Check if it is safe to call GetLong_name method. More...
void	CGC_AssemblyDesc_Base::ResetLong_name (void)
	Reset Long_name data member. More...
const TLong_name &	CGC_AssemblyDesc_Base::GetLong_name (void) const
	Get the Long_name member data. More...
void	CGC_AssemblyDesc_Base::SetLong_name (const TLong_name &value)
	Assign a value to Long_name data member. More...
void	CGC_AssemblyDesc_Base::SetLong_name (TLong_name &&value)
TLong_name &	CGC_AssemblyDesc_Base::SetLong_name (void)
	Assign a value to Long_name data member. More...
bool	CGC_AssemblyDesc_Base::IsSetFilesafe_name (void) const
	Check if a value has been assigned to Filesafe_name data member. More...
bool	CGC_AssemblyDesc_Base::CanGetFilesafe_name (void) const
	Check if it is safe to call GetFilesafe_name method. More...
void	CGC_AssemblyDesc_Base::ResetFilesafe_name (void)
	Reset Filesafe_name data member. More...
const TFilesafe_name &	CGC_AssemblyDesc_Base::GetFilesafe_name (void) const
	Get the Filesafe_name member data. More...
void	CGC_AssemblyDesc_Base::SetFilesafe_name (const TFilesafe_name &value)
	Assign a value to Filesafe_name data member. More...
void	CGC_AssemblyDesc_Base::SetFilesafe_name (TFilesafe_name &&value)
TFilesafe_name &	CGC_AssemblyDesc_Base::SetFilesafe_name (void)
	Assign a value to Filesafe_name data member. More...
bool	CGC_AssemblyDesc_Base::IsSetWgs_acc_prefix (void) const
	Check if a value has been assigned to Wgs_acc_prefix data member. More...
bool	CGC_AssemblyDesc_Base::CanGetWgs_acc_prefix (void) const
	Check if it is safe to call GetWgs_acc_prefix method. More...
void	CGC_AssemblyDesc_Base::ResetWgs_acc_prefix (void)
	Reset Wgs_acc_prefix data member. More...
const TWgs_acc_prefix &	CGC_AssemblyDesc_Base::GetWgs_acc_prefix (void) const
	Get the Wgs_acc_prefix member data. More...
void	CGC_AssemblyDesc_Base::SetWgs_acc_prefix (const TWgs_acc_prefix &value)
	Assign a value to Wgs_acc_prefix data member. More...
void	CGC_AssemblyDesc_Base::SetWgs_acc_prefix (TWgs_acc_prefix &&value)
TWgs_acc_prefix &	CGC_AssemblyDesc_Base::SetWgs_acc_prefix (void)
	Assign a value to Wgs_acc_prefix data member. More...
bool	CGC_AssemblyDesc_Base::IsSetWgs_acc_number (void) const
	Check if a value has been assigned to Wgs_acc_number data member. More...
bool	CGC_AssemblyDesc_Base::CanGetWgs_acc_number (void) const
	Check if it is safe to call GetWgs_acc_number method. More...
void	CGC_AssemblyDesc_Base::ResetWgs_acc_number (void)
	Reset Wgs_acc_number data member. More...
TWgs_acc_number	CGC_AssemblyDesc_Base::GetWgs_acc_number (void) const
	Get the Wgs_acc_number member data. More...
void	CGC_AssemblyDesc_Base::SetWgs_acc_number (TWgs_acc_number value)
	Assign a value to Wgs_acc_number data member. More...
TWgs_acc_number &	CGC_AssemblyDesc_Base::SetWgs_acc_number (void)
	Assign a value to Wgs_acc_number data member. More...
bool	CGC_AssemblyDesc_Base::IsSetRelease_type (void) const
	Check if a value has been assigned to Release_type data member. More...
bool	CGC_AssemblyDesc_Base::CanGetRelease_type (void) const
	Check if it is safe to call GetRelease_type method. More...
void	CGC_AssemblyDesc_Base::ResetRelease_type (void)
	Reset Release_type data member. More...
TRelease_type	CGC_AssemblyDesc_Base::GetRelease_type (void) const
	Get the Release_type member data. More...
void	CGC_AssemblyDesc_Base::SetRelease_type (TRelease_type value)
	Assign a value to Release_type data member. More...
TRelease_type &	CGC_AssemblyDesc_Base::SetRelease_type (void)
	Assign a value to Release_type data member. More...
bool	CGC_AssemblyDesc_Base::IsSetRelease_status (void) const
	Check if a value has been assigned to Release_status data member. More...
bool	CGC_AssemblyDesc_Base::CanGetRelease_status (void) const
	Check if it is safe to call GetRelease_status method. More...
void	CGC_AssemblyDesc_Base::ResetRelease_status (void)
	Reset Release_status data member. More...
TRelease_status	CGC_AssemblyDesc_Base::GetRelease_status (void) const
	Get the Release_status member data. More...
void	CGC_AssemblyDesc_Base::SetRelease_status (TRelease_status value)
	Assign a value to Release_status data member. More...
TRelease_status &	CGC_AssemblyDesc_Base::SetRelease_status (void)
	Assign a value to Release_status data member. More...
bool	CGC_AssemblyDesc_Base::IsSetAnnot (void) const
	in alt-loci units - contain alignment of this sequence to the primary unit Check if a value has been assigned to Annot data member. More...
bool	CGC_AssemblyDesc_Base::CanGetAnnot (void) const
	Check if it is safe to call GetAnnot method. More...
void	CGC_AssemblyDesc_Base::ResetAnnot (void)
	Reset Annot data member. More...
const TAnnot &	CGC_AssemblyDesc_Base::GetAnnot (void) const
	Get the Annot member data. More...
TAnnot &	CGC_AssemblyDesc_Base::SetAnnot (void)
	Assign a value to Annot data member. More...
bool	CGC_AssemblyDesc_Base::IsSetSynonyms (void) const
	Synonyms: Other releases of same assembly Check if a value has been assigned to Synonyms data member. More...
bool	CGC_AssemblyDesc_Base::CanGetSynonyms (void) const
	Check if it is safe to call GetSynonyms method. More...
void	CGC_AssemblyDesc_Base::ResetSynonyms (void)
	Reset Synonyms data member. More...
const TSynonyms &	CGC_AssemblyDesc_Base::GetSynonyms (void) const
	Get the Synonyms member data. More...
TSynonyms &	CGC_AssemblyDesc_Base::SetSynonyms (void)
	Assign a value to Synonyms data member. More...
bool	CGC_AssemblyDesc_Base::IsSetSubmitter_date (void) const
	Submitter release date Check if a value has been assigned to Submitter_date data member. More...
bool	CGC_AssemblyDesc_Base::CanGetSubmitter_date (void) const
	Check if it is safe to call GetSubmitter_date method. More...
void	CGC_AssemblyDesc_Base::ResetSubmitter_date (void)
	Reset Submitter_date data member. More...
const TSubmitter_date &	CGC_AssemblyDesc_Base::GetSubmitter_date (void) const
	Get the Submitter_date member data. More...
void	CGC_AssemblyDesc_Base::SetSubmitter_date (TSubmitter_date &value)
	Assign a value to Submitter_date data member. More...
TSubmitter_date &	CGC_AssemblyDesc_Base::SetSubmitter_date (void)
	Assign a value to Submitter_date data member. More...
bool	CGC_AssemblyDesc_Base::IsSetDescr (void) const
	Various attributes assigned at this level: biosrc, comments, publications... More...
bool	CGC_AssemblyDesc_Base::CanGetDescr (void) const
	Check if it is safe to call GetDescr method. More...
void	CGC_AssemblyDesc_Base::ResetDescr (void)
	Reset Descr data member. More...
const TDescr &	CGC_AssemblyDesc_Base::GetDescr (void) const
	Get the Descr member data. More...
void	CGC_AssemblyDesc_Base::SetDescr (TDescr &value)
	Assign a value to Descr data member. More...
TDescr &	CGC_AssemblyDesc_Base::SetDescr (void)
	Assign a value to Descr data member. More...
bool	CGC_AssemblyDesc_Base::IsSetPartial (void) const
	flag: is this assembly partial? **NOTE: not set = not known!! Check if a value has been assigned to Partial data member. More...
bool	CGC_AssemblyDesc_Base::CanGetPartial (void) const
	Check if it is safe to call GetPartial method. More...
void	CGC_AssemblyDesc_Base::ResetPartial (void)
	Reset Partial data member. More...
TPartial	CGC_AssemblyDesc_Base::GetPartial (void) const
	Get the Partial member data. More...
void	CGC_AssemblyDesc_Base::SetPartial (TPartial value)
	Assign a value to Partial data member. More...
TPartial &	CGC_AssemblyDesc_Base::SetPartial (void)
	Assign a value to Partial data member. More...
bool	CGC_AssemblyDesc_Base::IsSetCoverage (void) const
	level of coverage for this assembly **NOTE: not set = not known!! Check if a value has been assigned to Coverage data member. More...
bool	CGC_AssemblyDesc_Base::CanGetCoverage (void) const
	Check if it is safe to call GetCoverage method. More...
void	CGC_AssemblyDesc_Base::ResetCoverage (void)
	Reset Coverage data member. More...
TCoverage	CGC_AssemblyDesc_Base::GetCoverage (void) const
	Get the Coverage member data. More...
void	CGC_AssemblyDesc_Base::SetCoverage (TCoverage value)
	Assign a value to Coverage data member. More...
TCoverage &	CGC_AssemblyDesc_Base::SetCoverage (void)
	Assign a value to Coverage data member. More...
bool	CGC_AssemblyDesc_Base::IsSetRelease_level (void) const
	Check if a value has been assigned to Release_level data member. More...
bool	CGC_AssemblyDesc_Base::CanGetRelease_level (void) const
	Check if it is safe to call GetRelease_level method. More...
void	CGC_AssemblyDesc_Base::ResetRelease_level (void)
	Reset Release_level data member. More...
void	CGC_AssemblyDesc_Base::SetDefaultRelease_level (void)
	Assign default value to Release_level data member. More...
TRelease_level	CGC_AssemblyDesc_Base::GetRelease_level (void) const
	Get the Release_level member data. More...
void	CGC_AssemblyDesc_Base::SetRelease_level (TRelease_level value)
	Assign a value to Release_level data member. More...
TRelease_level &	CGC_AssemblyDesc_Base::SetRelease_level (void)
	Assign a value to Release_level data member. More...
bool	CGC_AssemblyDesc_Base::IsSetSubmitter_organization (void) const
	organization which submitted this assembly. More...
bool	CGC_AssemblyDesc_Base::CanGetSubmitter_organization (void) const
	Check if it is safe to call GetSubmitter_organization method. More...
void	CGC_AssemblyDesc_Base::ResetSubmitter_organization (void)
	Reset Submitter_organization data member. More...
const TSubmitter_organization &	CGC_AssemblyDesc_Base::GetSubmitter_organization (void) const
	Get the Submitter_organization member data. More...
void	CGC_AssemblyDesc_Base::SetSubmitter_organization (const TSubmitter_organization &value)
	Assign a value to Submitter_organization data member. More...
void	CGC_AssemblyDesc_Base::SetSubmitter_organization (TSubmitter_organization &&value)
TSubmitter_organization &	CGC_AssemblyDesc_Base::SetSubmitter_organization (void)
	Assign a value to Submitter_organization data member. More...
virtual void	CGC_AssemblyDesc_Base::Reset (void)
	Reset the whole object. More...
	CGC_AssemblyDesc_Base::CGC_AssemblyDesc_Base (const CGC_AssemblyDesc_Base &)
CGC_AssemblyDesc_Base &	CGC_AssemblyDesc_Base::operator= (const CGC_AssemblyDesc_Base &)
	CGC_AssemblySet_Base::CGC_AssemblySet_Base (void)
virtual	CGC_AssemblySet_Base::~CGC_AssemblySet_Base (void)
	CGC_AssemblySet_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CGC_AssemblySet_Base::ESet_type (void)
	Access to ESet_type's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CGC_AssemblySet_Base::EClass (void)
	Access to EClass's attributes (values, names) as defined in spec. More...
bool	CGC_AssemblySet_Base::IsSetId (void) const
	The identifier of this assembly examples: GC internal id, Assembly-accession.version Types of DbTags used: db "GenColl", tag id <assembly-release-id> db "GenColl", tag str <assembly-accession.version> db "AGP", tag id <agp-sumbission-id> db "GenColl_Chain", tag id <assembly-chain-id> db "UCSC_name", tag str <UCSC identifier for assembly> db "Ensembl_name",tag str <Ensembl identifier for assembly> Check if a value has been assigned to Id data member. More...
bool	CGC_AssemblySet_Base::CanGetId (void) const
	Check if it is safe to call GetId method. More...
void	CGC_AssemblySet_Base::ResetId (void)
	Reset Id data member. More...
const TId &	CGC_AssemblySet_Base::GetId (void) const
	Get the Id member data. More...
TId &	CGC_AssemblySet_Base::SetId (void)
	Assign a value to Id data member. More...
bool	CGC_AssemblySet_Base::IsSetSet_type (void) const
	Check if a value has been assigned to Set_type data member. More...
bool	CGC_AssemblySet_Base::CanGetSet_type (void) const
	Check if it is safe to call GetSet_type method. More...
void	CGC_AssemblySet_Base::ResetSet_type (void)
	Reset Set_type data member. More...
TSet_type	CGC_AssemblySet_Base::GetSet_type (void) const
	Get the Set_type member data. More...
void	CGC_AssemblySet_Base::SetSet_type (TSet_type value)
	Assign a value to Set_type data member. More...
TSet_type &	CGC_AssemblySet_Base::SetSet_type (void)
	Assign a value to Set_type data member. More...
bool	CGC_AssemblySet_Base::IsSetClass (void) const
	Check if a value has been assigned to Class data member. More...
bool	CGC_AssemblySet_Base::CanGetClass (void) const
	Check if it is safe to call GetClass method. More...
void	CGC_AssemblySet_Base::ResetClass (void)
	Reset Class data member. More...
TClass	CGC_AssemblySet_Base::GetClass (void) const
	Get the Class member data. More...
void	CGC_AssemblySet_Base::SetClass (TClass value)
	Assign a value to Class data member. More...
TClass &	CGC_AssemblySet_Base::SetClass (void)
	Assign a value to Class data member. More...
bool	CGC_AssemblySet_Base::IsSetDesc (void) const
	descriptors live in a shared data block Check if a value has been assigned to Desc data member. More...
bool	CGC_AssemblySet_Base::CanGetDesc (void) const
	Check if it is safe to call GetDesc method. More...
void	CGC_AssemblySet_Base::ResetDesc (void)
	Reset Desc data member. More...
const TDesc &	CGC_AssemblySet_Base::GetDesc (void) const
	Get the Desc member data. More...
void	CGC_AssemblySet_Base::SetDesc (TDesc &value)
	Assign a value to Desc data member. More...
TDesc &	CGC_AssemblySet_Base::SetDesc (void)
	Assign a value to Desc data member. More...
bool	CGC_AssemblySet_Base::IsSetPrimary_assembly (void) const
	we contain hierarchically a set of assemblies Check if a value has been assigned to Primary_assembly data member. More...
bool	CGC_AssemblySet_Base::CanGetPrimary_assembly (void) const
	Check if it is safe to call GetPrimary_assembly method. More...
void	CGC_AssemblySet_Base::ResetPrimary_assembly (void)
	Reset Primary_assembly data member. More...
const TPrimary_assembly &	CGC_AssemblySet_Base::GetPrimary_assembly (void) const
	Get the Primary_assembly member data. More...
void	CGC_AssemblySet_Base::SetPrimary_assembly (TPrimary_assembly &value)
	Assign a value to Primary_assembly data member. More...
TPrimary_assembly &	CGC_AssemblySet_Base::SetPrimary_assembly (void)
	Assign a value to Primary_assembly data member. More...
bool	CGC_AssemblySet_Base::IsSetMore_assemblies (void) const
	Check if a value has been assigned to More_assemblies data member. More...
bool	CGC_AssemblySet_Base::CanGetMore_assemblies (void) const
	Check if it is safe to call GetMore_assemblies method. More...
void	CGC_AssemblySet_Base::ResetMore_assemblies (void)
	Reset More_assemblies data member. More...
const TMore_assemblies &	CGC_AssemblySet_Base::GetMore_assemblies (void) const
	Get the More_assemblies member data. More...
TMore_assemblies &	CGC_AssemblySet_Base::SetMore_assemblies (void)
	Assign a value to More_assemblies data member. More...
bool	CGC_AssemblySet_Base::IsSetStats (void) const
	statistics "stats" field holds stats for all chromosomes combined: Check if a value has been assigned to Stats data member. More...
bool	CGC_AssemblySet_Base::CanGetStats (void) const
	Check if it is safe to call GetStats method. More...
void	CGC_AssemblySet_Base::ResetStats (void)
	Reset Stats data member. More...
const TStats &	CGC_AssemblySet_Base::GetStats (void) const
	Get the Stats member data. More...
void	CGC_AssemblySet_Base::SetStats (TStats &value)
	Assign a value to Stats data member. More...
TStats &	CGC_AssemblySet_Base::SetStats (void)
	Assign a value to Stats data member. More...
virtual void	CGC_AssemblySet_Base::Reset (void)
	Reset the whole object. More...
	CGC_AssemblySet_Base::CGC_AssemblySet_Base (const CGC_AssemblySet_Base &)
CGC_AssemblySet_Base &	CGC_AssemblySet_Base::operator= (const CGC_AssemblySet_Base &)
	CGC_AssemblyUnit_Base::CGC_AssemblyUnit_Base (void)
virtual	CGC_AssemblyUnit_Base::~CGC_AssemblyUnit_Base (void)
	CGC_AssemblyUnit_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CGC_AssemblyUnit_Base::EClass (void)
	Access to EClass's attributes (values, names) as defined in spec. More...
bool	CGC_AssemblyUnit_Base::IsSetId (void) const
	The identifier of this assembly Contains: GenColl internal id, GenColl accession.version, AGP id, UCSC name, Ensembl name Types of DbTags used: db "GenColl", tag id <assembly-release-id> db "GenColl", tag str <assembly-accession.version> db "AGP", tag id <agp-sumbission-id> db "GenColl_Chain", tag id <assembly-chain-id> "Ensembl_name" and "UCSC_name" will not appear in the Unit level since these organizations do not define assembly-units. More...
bool	CGC_AssemblyUnit_Base::CanGetId (void) const
	Check if it is safe to call GetId method. More...
void	CGC_AssemblyUnit_Base::ResetId (void)
	Reset Id data member. More...
const TId &	CGC_AssemblyUnit_Base::GetId (void) const
	Get the Id member data. More...
TId &	CGC_AssemblyUnit_Base::SetId (void)
	Assign a value to Id data member. More...
bool	CGC_AssemblyUnit_Base::IsSetClass (void) const
	Check if a value has been assigned to Class data member. More...
bool	CGC_AssemblyUnit_Base::CanGetClass (void) const
	Check if it is safe to call GetClass method. More...
void	CGC_AssemblyUnit_Base::ResetClass (void)
	Reset Class data member. More...
TClass	CGC_AssemblyUnit_Base::GetClass (void) const
	Get the Class member data. More...
void	CGC_AssemblyUnit_Base::SetClass (TClass value)
	Assign a value to Class data member. More...
TClass &	CGC_AssemblyUnit_Base::SetClass (void)
	Assign a value to Class data member. More...
bool	CGC_AssemblyUnit_Base::IsSetDesc (void) const
	descriptors live in a shared data block Check if a value has been assigned to Desc data member. More...
bool	CGC_AssemblyUnit_Base::CanGetDesc (void) const
	Check if it is safe to call GetDesc method. More...
void	CGC_AssemblyUnit_Base::ResetDesc (void)
	Reset Desc data member. More...
const TDesc &	CGC_AssemblyUnit_Base::GetDesc (void) const
	Get the Desc member data. More...
void	CGC_AssemblyUnit_Base::SetDesc (TDesc &value)
	Assign a value to Desc data member. More...
TDesc &	CGC_AssemblyUnit_Base::SetDesc (void)
	Assign a value to Desc data member. More...
bool	CGC_AssemblyUnit_Base::IsSetMols (void) const
	collections of molecules for this assembly Check if a value has been assigned to Mols data member. More...
bool	CGC_AssemblyUnit_Base::CanGetMols (void) const
	Check if it is safe to call GetMols method. More...
void	CGC_AssemblyUnit_Base::ResetMols (void)
	Reset Mols data member. More...
const TMols &	CGC_AssemblyUnit_Base::GetMols (void) const
	Get the Mols member data. More...
TMols &	CGC_AssemblyUnit_Base::SetMols (void)
	Assign a value to Mols data member. More...
bool	CGC_AssemblyUnit_Base::IsSetOther_sequences (void) const
	On primary assembly-unit: here will be the unplaced sequences On alt-loci: list of sequences aligned/unaligned to primary unit Check if a value has been assigned to Other_sequences data member. More...
bool	CGC_AssemblyUnit_Base::CanGetOther_sequences (void) const
	Check if it is safe to call GetOther_sequences method. More...
void	CGC_AssemblyUnit_Base::ResetOther_sequences (void)
	Reset Other_sequences data member. More...
const TOther_sequences &	CGC_AssemblyUnit_Base::GetOther_sequences (void) const
	Get the Other_sequences member data. More...
TOther_sequences &	CGC_AssemblyUnit_Base::SetOther_sequences (void)
	Assign a value to Other_sequences data member. More...
bool	CGC_AssemblyUnit_Base::IsSetStats (void) const
	statistics "stats" field holds stats for all chromosomes combined: ordered/unordered scaffolds "unplaced-stats" holds stats for ChrUn which is omitted from "stats" Check if a value has been assigned to Stats data member. More...
bool	CGC_AssemblyUnit_Base::CanGetStats (void) const
	Check if it is safe to call GetStats method. More...
void	CGC_AssemblyUnit_Base::ResetStats (void)
	Reset Stats data member. More...
const TStats &	CGC_AssemblyUnit_Base::GetStats (void) const
	Get the Stats member data. More...
void	CGC_AssemblyUnit_Base::SetStats (TStats &value)
	Assign a value to Stats data member. More...
TStats &	CGC_AssemblyUnit_Base::SetStats (void)
	Assign a value to Stats data member. More...
bool	CGC_AssemblyUnit_Base::IsSetUnplaced_stats (void) const
	Check if a value has been assigned to Unplaced_stats data member. More...
bool	CGC_AssemblyUnit_Base::CanGetUnplaced_stats (void) const
	Check if it is safe to call GetUnplaced_stats method. More...
void	CGC_AssemblyUnit_Base::ResetUnplaced_stats (void)
	Reset Unplaced_stats data member. More...
const TUnplaced_stats &	CGC_AssemblyUnit_Base::GetUnplaced_stats (void) const
	Get the Unplaced_stats member data. More...
TUnplaced_stats &	CGC_AssemblyUnit_Base::SetUnplaced_stats (void)
	Assign a value to Unplaced_stats data member. More...
bool	CGC_AssemblyUnit_Base::IsSetUnplaced_unlocalized_stats (void) const
	Check if a value has been assigned to Unplaced_unlocalized_stats data member. More...
bool	CGC_AssemblyUnit_Base::CanGetUnplaced_unlocalized_stats (void) const
	Check if it is safe to call GetUnplaced_unlocalized_stats method. More...
void	CGC_AssemblyUnit_Base::ResetUnplaced_unlocalized_stats (void)
	Reset Unplaced_unlocalized_stats data member. More...
const TUnplaced_unlocalized_stats &	CGC_AssemblyUnit_Base::GetUnplaced_unlocalized_stats (void) const
	Get the Unplaced_unlocalized_stats member data. More...
TUnplaced_unlocalized_stats &	CGC_AssemblyUnit_Base::SetUnplaced_unlocalized_stats (void)
	Assign a value to Unplaced_unlocalized_stats data member. More...
virtual void	CGC_AssemblyUnit_Base::Reset (void)
	Reset the whole object. More...
	CGC_AssemblyUnit_Base::CGC_AssemblyUnit_Base (const CGC_AssemblyUnit_Base &)
CGC_AssemblyUnit_Base &	CGC_AssemblyUnit_Base::operator= (const CGC_AssemblyUnit_Base &)
	CGC_DbTagAlias::CGC_DbTagAlias (void)
	CGC_DbTagAlias::~CGC_DbTagAlias (void)
	CGC_DbTagAlias::CGC_DbTagAlias (const CGC_DbTagAlias &value)
CGC_DbTagAlias &	CGC_DbTagAlias::operator= (const CGC_DbTagAlias &value)
	CGC_DbTagAlias_Base::CGC_DbTagAlias_Base (void)
virtual	CGC_DbTagAlias_Base::~CGC_DbTagAlias_Base (void)
	CGC_DbTagAlias_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CGC_DbTagAlias_Base::ESimilarity (void)
	Access to ESimilarity's attributes (values, names) as defined in spec. More...
bool	CGC_DbTagAlias_Base::IsSetRefseq (void) const
	the refseq assembly release-id Check if a value has been assigned to Refseq data member. More...
bool	CGC_DbTagAlias_Base::CanGetRefseq (void) const
	Check if it is safe to call GetRefseq method. More...
void	CGC_DbTagAlias_Base::ResetRefseq (void)
	Reset Refseq data member. More...
const TRefseq &	CGC_DbTagAlias_Base::GetRefseq (void) const
	Get the Refseq member data. More...
void	CGC_DbTagAlias_Base::SetRefseq (TRefseq &value)
	Assign a value to Refseq data member. More...
TRefseq &	CGC_DbTagAlias_Base::SetRefseq (void)
	Assign a value to Refseq data member. More...
bool	CGC_DbTagAlias_Base::IsSetGenbank (void) const
	the genbank assembly release-id Check if a value has been assigned to Genbank data member. More...
bool	CGC_DbTagAlias_Base::CanGetGenbank (void) const
	Check if it is safe to call GetGenbank method. More...
void	CGC_DbTagAlias_Base::ResetGenbank (void)
	Reset Genbank data member. More...
const TGenbank &	CGC_DbTagAlias_Base::GetGenbank (void) const
	Get the Genbank member data. More...
void	CGC_DbTagAlias_Base::SetGenbank (TGenbank &value)
	Assign a value to Genbank data member. More...
TGenbank &	CGC_DbTagAlias_Base::SetGenbank (void)
	Assign a value to Genbank data member. More...
bool	CGC_DbTagAlias_Base::IsSetSimilarity (void) const
	Check if a value has been assigned to Similarity data member. More...
bool	CGC_DbTagAlias_Base::CanGetSimilarity (void) const
	Check if it is safe to call GetSimilarity method. More...
void	CGC_DbTagAlias_Base::ResetSimilarity (void)
	Reset Similarity data member. More...
TSimilarity	CGC_DbTagAlias_Base::GetSimilarity (void) const
	Get the Similarity member data. More...
void	CGC_DbTagAlias_Base::SetSimilarity (TSimilarity value)
	Assign a value to Similarity data member. More...
TSimilarity &	CGC_DbTagAlias_Base::SetSimilarity (void)
	Assign a value to Similarity data member. More...
virtual void	CGC_DbTagAlias_Base::Reset (void)
	Reset the whole object. More...
	CGC_DbTagAlias_Base::CGC_DbTagAlias_Base (const CGC_DbTagAlias_Base &)
CGC_DbTagAlias_Base &	CGC_DbTagAlias_Base::operator= (const CGC_DbTagAlias_Base &)
	CGC_External_Seqid::CGC_External_Seqid (void)
	CGC_External_Seqid::~CGC_External_Seqid (void)
	CGC_External_Seqid::CGC_External_Seqid (const CGC_External_Seqid &value)
CGC_External_Seqid &	CGC_External_Seqid::operator= (const CGC_External_Seqid &value)
	CGC_External_Seqid_Base::CGC_External_Seqid_Base (void)
virtual	CGC_External_Seqid_Base::~CGC_External_Seqid_Base (void)
	CGC_External_Seqid_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CGC_External_Seqid_Base::IsSetExternal (void) const
	Check if a value has been assigned to External data member. More...
bool	CGC_External_Seqid_Base::CanGetExternal (void) const
	Check if it is safe to call GetExternal method. More...
void	CGC_External_Seqid_Base::ResetExternal (void)
	Reset External data member. More...
const TExternal &	CGC_External_Seqid_Base::GetExternal (void) const
	Get the External member data. More...
void	CGC_External_Seqid_Base::SetExternal (const TExternal &value)
	Assign a value to External data member. More...
void	CGC_External_Seqid_Base::SetExternal (TExternal &&value)
TExternal &	CGC_External_Seqid_Base::SetExternal (void)
	Assign a value to External data member. More...
bool	CGC_External_Seqid_Base::IsSetId (void) const
	Check if a value has been assigned to Id data member. More...
bool	CGC_External_Seqid_Base::CanGetId (void) const
	Check if it is safe to call GetId method. More...
void	CGC_External_Seqid_Base::ResetId (void)
	Reset Id data member. More...
const TId &	CGC_External_Seqid_Base::GetId (void) const
	Get the Id member data. More...
void	CGC_External_Seqid_Base::SetId (TId &value)
	Assign a value to Id data member. More...
TId &	CGC_External_Seqid_Base::SetId (void)
	Assign a value to Id data member. More...
virtual void	CGC_External_Seqid_Base::Reset (void)
	Reset the whole object. More...
	CGC_External_Seqid_Base::CGC_External_Seqid_Base (const CGC_External_Seqid_Base &)
CGC_External_Seqid_Base &	CGC_External_Seqid_Base::operator= (const CGC_External_Seqid_Base &)
	CGC_Genome::CGC_Genome (void)
	CGC_Genome::~CGC_Genome (void)
	CGC_Genome::CGC_Genome (const CGC_Genome &value)
CGC_Genome &	CGC_Genome::operator= (const CGC_Genome &value)
	CGC_Genome_Base::CGC_Genome_Base (void)
virtual	CGC_Genome_Base::~CGC_Genome_Base (void)
	CGC_Genome_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CGC_Genome_Base::IsSetId (void) const
	Gencoll identifier for this genome Check if a value has been assigned to Id data member. More...
bool	CGC_Genome_Base::CanGetId (void) const
	Check if it is safe to call GetId method. More...
void	CGC_Genome_Base::ResetId (void)
	Reset Id data member. More...
const TId &	CGC_Genome_Base::GetId (void) const
	Get the Id member data. More...
TId &	CGC_Genome_Base::SetId (void)
	Assign a value to Id data member. More...
bool	CGC_Genome_Base::IsSetProjects (void) const
	project ID for this genome this is the ID for this asssembly and may reflect the submitter/source Check if a value has been assigned to Projects data member. More...
bool	CGC_Genome_Base::CanGetProjects (void) const
	Check if it is safe to call GetProjects method. More...
void	CGC_Genome_Base::ResetProjects (void)
	Reset Projects data member. More...
const TProjects &	CGC_Genome_Base::GetProjects (void) const
	Get the Projects member data. More...
TProjects &	CGC_Genome_Base::SetProjects (void)
	Assign a value to Projects data member. More...
bool	CGC_Genome_Base::IsSetDescr (void) const
	Various attributes assigned at this level: biosrc, comments, publications... More...
bool	CGC_Genome_Base::CanGetDescr (void) const
	Check if it is safe to call GetDescr method. More...
void	CGC_Genome_Base::ResetDescr (void)
	Reset Descr data member. More...
const TDescr &	CGC_Genome_Base::GetDescr (void) const
	Get the Descr member data. More...
void	CGC_Genome_Base::SetDescr (TDescr &value)
	Assign a value to Descr data member. More...
TDescr &	CGC_Genome_Base::SetDescr (void)
	Assign a value to Descr data member. More...
bool	CGC_Genome_Base::IsSetChr_names (void) const
	official list of chromosome names this should be the complete expected set of chromosomes regardless of whether they are represented in *any* genomic part Check if a value has been assigned to Chr_names data member. More...
bool	CGC_Genome_Base::CanGetChr_names (void) const
	Check if it is safe to call GetChr_names method. More...
void	CGC_Genome_Base::ResetChr_names (void)
	Reset Chr_names data member. More...
const TChr_names &	CGC_Genome_Base::GetChr_names (void) const
	Get the Chr_names member data. More...
TChr_names &	CGC_Genome_Base::SetChr_names (void)
	Assign a value to Chr_names data member. More...
bool	CGC_Genome_Base::IsSetParts (void) const
	the bits that make up this genome this preserves the expected display order Check if a value has been assigned to Parts data member. More...
bool	CGC_Genome_Base::CanGetParts (void) const
	Check if it is safe to call GetParts method. More...
void	CGC_Genome_Base::ResetParts (void)
	Reset Parts data member. More...
const TParts &	CGC_Genome_Base::GetParts (void) const
	Get the Parts member data. More...
TParts &	CGC_Genome_Base::SetParts (void)
	Assign a value to Parts data member. More...
virtual void	CGC_Genome_Base::Reset (void)
	Reset the whole object. More...
	CGC_Genome_Base::CGC_Genome_Base (const CGC_Genome_Base &)
CGC_Genome_Base &	CGC_Genome_Base::operator= (const CGC_Genome_Base &)
	CGC_GenomicPart::CGC_GenomicPart (void)
	CGC_GenomicPart::~CGC_GenomicPart (void)
	CGC_GenomicPart::CGC_GenomicPart (const CGC_GenomicPart &value)
CGC_GenomicPart &	CGC_GenomicPart::operator= (const CGC_GenomicPart &value)
	CGC_GenomicPart_Base::CGC_GenomicPart_Base (void)
virtual	CGC_GenomicPart_Base::~CGC_GenomicPart_Base (void)
	CGC_GenomicPart_Base::DECLARE_INTERNAL_TYPE_INFO ()
virtual void	CGC_GenomicPart_Base::Reset (void)
	Reset the whole object. More...
virtual void	CGC_GenomicPart_Base::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CGC_GenomicPart_Base::Which (void) const
	Which variant is currently selected. More...
void	CGC_GenomicPart_Base::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CGC_GenomicPart_Base::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CGC_GenomicPart_Base::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CGC_GenomicPart_Base::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CGC_GenomicPart_Base::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CGC_GenomicPart_Base::IsAssembly (void) const
	Check if variant Assembly is selected. More...
const TAssembly &	CGC_GenomicPart_Base::GetAssembly (void) const
	Get the variant data. More...
TAssembly &	CGC_GenomicPart_Base::SetAssembly (void)
	Select the variant. More...
void	CGC_GenomicPart_Base::SetAssembly (TAssembly &value)
	Select the variant and set its data. More...
bool	CGC_GenomicPart_Base::IsMol (void) const
	Check if variant Mol is selected. More...
const TMol &	CGC_GenomicPart_Base::GetMol (void) const
	Get the variant data. More...
TMol &	CGC_GenomicPart_Base::SetMol (void)
	Select the variant. More...
void	CGC_GenomicPart_Base::SetMol (TMol &value)
	Select the variant and set its data. More...
bool	CGC_GenomicPart_Base::IsSeqs (void) const
	Check if variant Seqs is selected. More...
const TSeqs &	CGC_GenomicPart_Base::GetSeqs (void) const
	Get the variant data. More...
TSeqs &	CGC_GenomicPart_Base::SetSeqs (void)
	Select the variant. More...
void	CGC_GenomicPart_Base::SetSeqs (TSeqs &value)
	Select the variant and set its data. More...
	CGC_GenomicPart_Base::CGC_GenomicPart_Base (const CGC_GenomicPart_Base &)
CGC_GenomicPart_Base &	CGC_GenomicPart_Base::operator= (const CGC_GenomicPart_Base &)
void	CGC_GenomicPart_Base::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
	CGC_Project::CGC_Project (void)
	CGC_Project::~CGC_Project (void)
	CGC_Project::CGC_Project (const CGC_Project &value)
CGC_Project &	CGC_Project::operator= (const CGC_Project &value)
	CGC_Project_Base::CGC_Project_Base (void)
virtual	CGC_Project_Base::~CGC_Project_Base (void)
	CGC_Project_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CGC_Project_Base::IsSetProject_role (void) const
	Genbank / Refseq Check if a value has been assigned to Project_role data member. More...
bool	CGC_Project_Base::CanGetProject_role (void) const
	Check if it is safe to call GetProject_role method. More...
void	CGC_Project_Base::ResetProject_role (void)
	Reset Project_role data member. More...
const TProject_role &	CGC_Project_Base::GetProject_role (void) const
	Get the Project_role member data. More...
void	CGC_Project_Base::SetProject_role (const TProject_role &value)
	Assign a value to Project_role data member. More...
void	CGC_Project_Base::SetProject_role (TProject_role &&value)
TProject_role &	CGC_Project_Base::SetProject_role (void)
	Assign a value to Project_role data member. More...
bool	CGC_Project_Base::IsSetProject_id (void) const
	Check if a value has been assigned to Project_id data member. More...
bool	CGC_Project_Base::CanGetProject_id (void) const
	Check if it is safe to call GetProject_id method. More...
void	CGC_Project_Base::ResetProject_id (void)
	Reset Project_id data member. More...
TProject_id	CGC_Project_Base::GetProject_id (void) const
	Get the Project_id member data. More...
void	CGC_Project_Base::SetProject_id (TProject_id value)
	Assign a value to Project_id data member. More...
TProject_id &	CGC_Project_Base::SetProject_id (void)
	Assign a value to Project_id data member. More...
virtual void	CGC_Project_Base::Reset (void)
	Reset the whole object. More...
	CGC_Project_Base::CGC_Project_Base (const CGC_Project_Base &)
CGC_Project_Base &	CGC_Project_Base::operator= (const CGC_Project_Base &)
	CGC_Query::CGC_Query (void)
	CGC_Query::~CGC_Query (void)
	CGC_Query::CGC_Query (const CGC_Query &value)
CGC_Query &	CGC_Query::operator= (const CGC_Query &value)
	CGC_Query_Base::CGC_Query_Base (void)
virtual	CGC_Query_Base::~CGC_Query_Base (void)
	CGC_Query_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CGC_Query_Base::IsSetParam (void) const
	Check if a value has been assigned to Param data member. More...
bool	CGC_Query_Base::CanGetParam (void) const
	Check if it is safe to call GetParam method. More...
void	CGC_Query_Base::ResetParam (void)
	Reset Param data member. More...
const TParam &	CGC_Query_Base::GetParam (void) const
	Get the Param member data. More...
void	CGC_Query_Base::SetParam (const TParam &value)
	Assign a value to Param data member. More...
void	CGC_Query_Base::SetParam (TParam &&value)
TParam &	CGC_Query_Base::SetParam (void)
	Assign a value to Param data member. More...
bool	CGC_Query_Base::IsSetValue (void) const
	Check if a value has been assigned to Value data member. More...
bool	CGC_Query_Base::CanGetValue (void) const
	Check if it is safe to call GetValue method. More...
void	CGC_Query_Base::ResetValue (void)
	Reset Value data member. More...
const TValue &	CGC_Query_Base::GetValue (void) const
	Get the Value member data. More...
void	CGC_Query_Base::SetValue (const TValue &value)
	Assign a value to Value data member. More...
void	CGC_Query_Base::SetValue (TValue &&value)
TValue &	CGC_Query_Base::SetValue (void)
	Assign a value to Value data member. More...
virtual void	CGC_Query_Base::Reset (void)
	Reset the whole object. More...
	CGC_Query_Base::CGC_Query_Base (const CGC_Query_Base &)
CGC_Query_Base &	CGC_Query_Base::operator= (const CGC_Query_Base &)
	CGC_Replicon_Base::CGC_Replicon_Base (void)
virtual	CGC_Replicon_Base::~CGC_Replicon_Base (void)
	CGC_Replicon_Base::DECLARE_INTERNAL_TYPE_INFO ()
	CGC_Replicon_Base::C_Sequence::C_Sequence (void)
	CGC_Replicon_Base::C_Sequence::~C_Sequence (void)
	CGC_Replicon_Base::C_Sequence::DECLARE_INTERNAL_TYPE_INFO ()
void	CGC_Replicon_Base::C_Sequence::Reset (void)
	Reset the whole object. More...
void	CGC_Replicon_Base::C_Sequence::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CGC_Replicon_Base::C_Sequence::Which (void) const
	Which variant is currently selected. More...
void	CGC_Replicon_Base::C_Sequence::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CGC_Replicon_Base::C_Sequence::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CGC_Replicon_Base::C_Sequence::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CGC_Replicon_Base::C_Sequence::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CGC_Replicon_Base::C_Sequence::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CGC_Replicon_Base::C_Sequence::IsSingle (void) const
	Check if variant Single is selected. More...
const TSingle &	CGC_Replicon_Base::C_Sequence::GetSingle (void) const
	Get the variant data. More...
TSingle &	CGC_Replicon_Base::C_Sequence::SetSingle (void)
	Select the variant. More...
void	CGC_Replicon_Base::C_Sequence::SetSingle (TSingle &value)
	Select the variant and set its data. More...
bool	CGC_Replicon_Base::C_Sequence::IsSet (void) const
	Check if variant Set is selected. More...
const TSet &	CGC_Replicon_Base::C_Sequence::GetSet (void) const
	Get the variant data. More...
TSet &	CGC_Replicon_Base::C_Sequence::SetSet (void)
	Select the variant. More...
	CGC_Replicon_Base::C_Sequence::C_Sequence (const C_Sequence &)
C_Sequence &	CGC_Replicon_Base::C_Sequence::operator= (const C_Sequence &)
void	CGC_Replicon_Base::C_Sequence::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
bool	CGC_Replicon_Base::IsSetName (void) const
	name for this molecule the official name, Check if a value has been assigned to Name data member. More...
bool	CGC_Replicon_Base::CanGetName (void) const
	Check if it is safe to call GetName method. More...
void	CGC_Replicon_Base::ResetName (void)
	Reset Name data member. More...
const TName &	CGC_Replicon_Base::GetName (void) const
	Get the Name member data. More...
void	CGC_Replicon_Base::SetName (const TName &value)
	Assign a value to Name data member. More...
void	CGC_Replicon_Base::SetName (TName &&value)
TName &	CGC_Replicon_Base::SetName (void)
	Assign a value to Name data member. More...
bool	CGC_Replicon_Base::IsSetLocal_name (void) const
	If the chromosome has a different name in this assembly. More...
bool	CGC_Replicon_Base::CanGetLocal_name (void) const
	Check if it is safe to call GetLocal_name method. More...
void	CGC_Replicon_Base::ResetLocal_name (void)
	Reset Local_name data member. More...
const TLocal_name &	CGC_Replicon_Base::GetLocal_name (void) const
	Get the Local_name member data. More...
void	CGC_Replicon_Base::SetLocal_name (const TLocal_name &value)
	Assign a value to Local_name data member. More...
void	CGC_Replicon_Base::SetLocal_name (TLocal_name &&value)
TLocal_name &	CGC_Replicon_Base::SetLocal_name (void)
	Assign a value to Local_name data member. More...
bool	CGC_Replicon_Base::IsSetSequence (void) const
	Check if a value has been assigned to Sequence data member. More...
bool	CGC_Replicon_Base::CanGetSequence (void) const
	Check if it is safe to call GetSequence method. More...
void	CGC_Replicon_Base::ResetSequence (void)
	Reset Sequence data member. More...
const TSequence &	CGC_Replicon_Base::GetSequence (void) const
	Get the Sequence member data. More...
void	CGC_Replicon_Base::SetSequence (TSequence &value)
	Assign a value to Sequence data member. More...
TSequence &	CGC_Replicon_Base::SetSequence (void)
	Assign a value to Sequence data member. More...
virtual void	CGC_Replicon_Base::Reset (void)
	Reset the whole object. More...
	CGC_Replicon_Base::CGC_Replicon_Base (const CGC_Replicon_Base &)
CGC_Replicon_Base &	CGC_Replicon_Base::operator= (const CGC_Replicon_Base &)
	CGC_Scaf_stats::CGC_Scaf_stats (void)
	CGC_Scaf_stats::~CGC_Scaf_stats (void)
	CGC_Scaf_stats::CGC_Scaf_stats (const CGC_Scaf_stats &value)
CGC_Scaf_stats &	CGC_Scaf_stats::operator= (const CGC_Scaf_stats &value)
	CGC_Scaf_stats_Base::CGC_Scaf_stats_Base (void)
virtual	CGC_Scaf_stats_Base::~CGC_Scaf_stats_Base (void)
	CGC_Scaf_stats_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CGC_Scaf_stats_Base::EStats_category (void)
	Access to EStats_category's attributes (values, names) as defined in spec. More...
bool	CGC_Scaf_stats_Base::IsSetStats_category (void) const
	Check if a value has been assigned to Stats_category data member. More...
bool	CGC_Scaf_stats_Base::CanGetStats_category (void) const
	Check if it is safe to call GetStats_category method. More...
void	CGC_Scaf_stats_Base::ResetStats_category (void)
	Reset Stats_category data member. More...
TStats_category	CGC_Scaf_stats_Base::GetStats_category (void) const
	Get the Stats_category member data. More...
void	CGC_Scaf_stats_Base::SetStats_category (TStats_category value)
	Assign a value to Stats_category data member. More...
TStats_category &	CGC_Scaf_stats_Base::SetStats_category (void)
	Assign a value to Stats_category data member. More...
bool	CGC_Scaf_stats_Base::IsSetValue (void) const
	Check if a value has been assigned to Value data member. More...
bool	CGC_Scaf_stats_Base::CanGetValue (void) const
	Check if it is safe to call GetValue method. More...
void	CGC_Scaf_stats_Base::ResetValue (void)
	Reset Value data member. More...
TValue	CGC_Scaf_stats_Base::GetValue (void) const
	Get the Value member data. More...
void	CGC_Scaf_stats_Base::SetValue (TValue value)
	Assign a value to Value data member. More...
TValue &	CGC_Scaf_stats_Base::SetValue (void)
	Assign a value to Value data member. More...
virtual void	CGC_Scaf_stats_Base::Reset (void)
	Reset the whole object. More...
	CGC_Scaf_stats_Base::CGC_Scaf_stats_Base (const CGC_Scaf_stats_Base &)
CGC_Scaf_stats_Base &	CGC_Scaf_stats_Base::operator= (const CGC_Scaf_stats_Base &)
	CGC_SeqIdAlias_Base::CGC_SeqIdAlias_Base (void)
virtual	CGC_SeqIdAlias_Base::~CGC_SeqIdAlias_Base (void)
	CGC_SeqIdAlias_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CGC_SeqIdAlias_Base::ESimilarity (void)
	Access to ESimilarity's attributes (values, names) as defined in spec. More...
bool	CGC_SeqIdAlias_Base::IsSetPublic (void) const
	the refseq/genbank accession Check if a value has been assigned to Public data member. More...
bool	CGC_SeqIdAlias_Base::CanGetPublic (void) const
	Check if it is safe to call GetPublic method. More...
void	CGC_SeqIdAlias_Base::ResetPublic (void)
	Reset Public data member. More...
const TPublic &	CGC_SeqIdAlias_Base::GetPublic (void) const
	Get the Public member data. More...
void	CGC_SeqIdAlias_Base::SetPublic (TPublic &value)
	Assign a value to Public data member. More...
TPublic &	CGC_SeqIdAlias_Base::SetPublic (void)
	Assign a value to Public data member. More...
bool	CGC_SeqIdAlias_Base::IsSetGpipe (void) const
	the gpipe accession Check if a value has been assigned to Gpipe data member. More...
bool	CGC_SeqIdAlias_Base::CanGetGpipe (void) const
	Check if it is safe to call GetGpipe method. More...
void	CGC_SeqIdAlias_Base::ResetGpipe (void)
	Reset Gpipe data member. More...
const TGpipe &	CGC_SeqIdAlias_Base::GetGpipe (void) const
	Get the Gpipe member data. More...
void	CGC_SeqIdAlias_Base::SetGpipe (TGpipe &value)
	Assign a value to Gpipe data member. More...
TGpipe &	CGC_SeqIdAlias_Base::SetGpipe (void)
	Assign a value to Gpipe data member. More...
bool	CGC_SeqIdAlias_Base::IsSetGi (void) const
	optional since not all sequences have GIs Similarity: relationship between this synonym to main seqid of the GC-Sequence Can be expanded to multiple level of identicality can use bitmap to flag ambiguity between different levels Check if a value has been assigned to Gi data member. More...
bool	CGC_SeqIdAlias_Base::CanGetGi (void) const
	Check if it is safe to call GetGi method. More...
void	CGC_SeqIdAlias_Base::ResetGi (void)
	Reset Gi data member. More...
const TGi &	CGC_SeqIdAlias_Base::GetGi (void) const
	Get the Gi member data. More...
void	CGC_SeqIdAlias_Base::SetGi (TGi &value)
	Assign a value to Gi data member. More...
TGi &	CGC_SeqIdAlias_Base::SetGi (void)
	Assign a value to Gi data member. More...
bool	CGC_SeqIdAlias_Base::IsSetSimilarity (void) const
	Check if a value has been assigned to Similarity data member. More...
bool	CGC_SeqIdAlias_Base::CanGetSimilarity (void) const
	Check if it is safe to call GetSimilarity method. More...
void	CGC_SeqIdAlias_Base::ResetSimilarity (void)
	Reset Similarity data member. More...
TSimilarity	CGC_SeqIdAlias_Base::GetSimilarity (void) const
	Get the Similarity member data. More...
void	CGC_SeqIdAlias_Base::SetSimilarity (TSimilarity value)
	Assign a value to Similarity data member. More...
TSimilarity &	CGC_SeqIdAlias_Base::SetSimilarity (void)
	Assign a value to Similarity data member. More...
virtual void	CGC_SeqIdAlias_Base::Reset (void)
	Reset the whole object. More...
	CGC_SeqIdAlias_Base::CGC_SeqIdAlias_Base (const CGC_SeqIdAlias_Base &)
CGC_SeqIdAlias_Base &	CGC_SeqIdAlias_Base::operator= (const CGC_SeqIdAlias_Base &)
	CGC_Sequence_Base::CGC_Sequence_Base (void)
virtual	CGC_Sequence_Base::~CGC_Sequence_Base (void)
	CGC_Sequence_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CGC_Sequence_Base::EPatch_type (void)
	Access to EPatch_type's attributes (values, names) as defined in spec. More...
bool	CGC_Sequence_Base::IsSetSeq_id (void) const
	identifiers are: Local / gpipe-satellite / genbank / refseq local is merely local name (or maybe with WGS accession??) others are accession/ver/gi More...
bool	CGC_Sequence_Base::CanGetSeq_id (void) const
	Check if it is safe to call GetSeq_id method. More...
void	CGC_Sequence_Base::ResetSeq_id (void)
	Reset Seq_id data member. More...
const TSeq_id &	CGC_Sequence_Base::GetSeq_id (void) const
	Get the Seq_id member data. More...
void	CGC_Sequence_Base::SetSeq_id (TSeq_id &value)
	Assign a value to Seq_id data member. More...
TSeq_id &	CGC_Sequence_Base::SetSeq_id (void)
	Assign a value to Seq_id data member. More...
bool	CGC_Sequence_Base::IsSetSeq_id_synonyms (void) const
	Other known identifiers: Local / gpipe-satellite / genbank / refseq Check if a value has been assigned to Seq_id_synonyms data member. More...
bool	CGC_Sequence_Base::CanGetSeq_id_synonyms (void) const
	Check if it is safe to call GetSeq_id_synonyms method. More...
void	CGC_Sequence_Base::ResetSeq_id_synonyms (void)
	Reset Seq_id_synonyms data member. More...
const TSeq_id_synonyms &	CGC_Sequence_Base::GetSeq_id_synonyms (void) const
	Get the Seq_id_synonyms member data. More...
TSeq_id_synonyms &	CGC_Sequence_Base::SetSeq_id_synonyms (void)
	Assign a value to Seq_id_synonyms data member. More...
bool	CGC_Sequence_Base::IsSetDescr (void) const
	Various attributes assigned at this level: biosrc, comments, publications... More...
bool	CGC_Sequence_Base::CanGetDescr (void) const
	Check if it is safe to call GetDescr method. More...
void	CGC_Sequence_Base::ResetDescr (void)
	Reset Descr data member. More...
const TDescr &	CGC_Sequence_Base::GetDescr (void) const
	Get the Descr member data. More...
void	CGC_Sequence_Base::SetDescr (TDescr &value)
	Assign a value to Descr data member. More...
TDescr &	CGC_Sequence_Base::SetDescr (void)
	Assign a value to Descr data member. More...
bool	CGC_Sequence_Base::IsSetAnnot (void) const
	Feature annotation; Contains Pseudo Autosomal regions on chromosomes and scaffolds in the following format: Id = <ID of PAR (ex:"PAR#1")> Desc (set of Annot-descr) Name: "pseudo autosomal region" Region (seq-loc): int (seq-interval) Id: <GI of chromosome> From: <start-position of region> To : <end-position of region> Data: locs (set of seq-loc): List of int (seq-interval): Id: GI of scaffold From/to: position on scaffold that belongs to this PAR region. More...
bool	CGC_Sequence_Base::CanGetAnnot (void) const
	Check if it is safe to call GetAnnot method. More...
void	CGC_Sequence_Base::ResetAnnot (void)
	Reset Annot data member. More...
const TAnnot &	CGC_Sequence_Base::GetAnnot (void) const
	Get the Annot member data. More...
TAnnot &	CGC_Sequence_Base::SetAnnot (void)
	Assign a value to Annot data member. More...
bool	CGC_Sequence_Base::IsSetSequences (void) const
	placed: populated both on chromosome and scaffold levels unlocalized: populated on chromosome level Check if a value has been assigned to Sequences data member. More...
bool	CGC_Sequence_Base::CanGetSequences (void) const
	Check if it is safe to call GetSequences method. More...
void	CGC_Sequence_Base::ResetSequences (void)
	Reset Sequences data member. More...
const TSequences &	CGC_Sequence_Base::GetSequences (void) const
	Get the Sequences member data. More...
TSequences &	CGC_Sequence_Base::SetSequences (void)
	Assign a value to Sequences data member. More...
bool	CGC_Sequence_Base::IsSetStructure (void) const
	locations of ordered scaffolds/components Check if a value has been assigned to Structure data member. More...
bool	CGC_Sequence_Base::CanGetStructure (void) const
	Check if it is safe to call GetStructure method. More...
void	CGC_Sequence_Base::ResetStructure (void)
	Reset Structure data member. More...
const TStructure &	CGC_Sequence_Base::GetStructure (void) const
	Get the Structure member data. More...
void	CGC_Sequence_Base::SetStructure (TStructure &value)
	Assign a value to Structure data member. More...
TStructure &	CGC_Sequence_Base::SetStructure (void)
	Assign a value to Structure data member. More...
bool	CGC_Sequence_Base::IsSetStats (void) const
	statistics Check if a value has been assigned to Stats data member. More...
bool	CGC_Sequence_Base::CanGetStats (void) const
	Check if it is safe to call GetStats method. More...
void	CGC_Sequence_Base::ResetStats (void)
	Reset Stats data member. More...
const TStats &	CGC_Sequence_Base::GetStats (void) const
	Get the Stats member data. More...
void	CGC_Sequence_Base::SetStats (TStats &value)
	Assign a value to Stats data member. More...
TStats &	CGC_Sequence_Base::SetStats (void)
	Assign a value to Stats data member. More...
bool	CGC_Sequence_Base::IsSetPatch_type (void) const
	Check if a value has been assigned to Patch_type data member. More...
bool	CGC_Sequence_Base::CanGetPatch_type (void) const
	Check if it is safe to call GetPatch_type method. More...
void	CGC_Sequence_Base::ResetPatch_type (void)
	Reset Patch_type data member. More...
TPatch_type	CGC_Sequence_Base::GetPatch_type (void) const
	Get the Patch_type member data. More...
void	CGC_Sequence_Base::SetPatch_type (TPatch_type value)
	Assign a value to Patch_type data member. More...
TPatch_type &	CGC_Sequence_Base::SetPatch_type (void)
	Assign a value to Patch_type data member. More...
bool	CGC_Sequence_Base::IsSetRoles (void) const
	sequence-role: what role(s) does this sequence have in the assembly Check if a value has been assigned to Roles data member. More...
bool	CGC_Sequence_Base::CanGetRoles (void) const
	Check if it is safe to call GetRoles method. More...
void	CGC_Sequence_Base::ResetRoles (void)
	Reset Roles data member. More...
const TRoles &	CGC_Sequence_Base::GetRoles (void) const
	Get the Roles member data. More...
TRoles &	CGC_Sequence_Base::SetRoles (void)
	Assign a value to Roles data member. More...
virtual void	CGC_Sequence_Base::Reset (void)
	Reset the whole object. More...
	CGC_Sequence_Base::CGC_Sequence_Base (const CGC_Sequence_Base &)
CGC_Sequence_Base &	CGC_Sequence_Base::operator= (const CGC_Sequence_Base &)
	CGC_SequenceStats::CGC_SequenceStats (void)
	CGC_SequenceStats::~CGC_SequenceStats (void)
	CGC_SequenceStats::CGC_SequenceStats (const CGC_SequenceStats &value)
CGC_SequenceStats &	CGC_SequenceStats::operator= (const CGC_SequenceStats &value)
	CGC_SequenceStats_Base::CGC_SequenceStats_Base (void)
virtual	CGC_SequenceStats_Base::~CGC_SequenceStats_Base (void)
	CGC_SequenceStats_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CGC_SequenceStats_Base::IsSetAll_scaf (void) const
	Check if a value has been assigned to All_scaf data member. More...
bool	CGC_SequenceStats_Base::CanGetAll_scaf (void) const
	Check if it is safe to call GetAll_scaf method. More...
void	CGC_SequenceStats_Base::ResetAll_scaf (void)
	Reset All_scaf data member. More...
const TAll_scaf &	CGC_SequenceStats_Base::GetAll_scaf (void) const
	Get the All_scaf member data. More...
TAll_scaf &	CGC_SequenceStats_Base::SetAll_scaf (void)
	Assign a value to All_scaf data member. More...
bool	CGC_SequenceStats_Base::IsSetOrdered_scaf (void) const
	Check if a value has been assigned to Ordered_scaf data member. More...
bool	CGC_SequenceStats_Base::CanGetOrdered_scaf (void) const
	Check if it is safe to call GetOrdered_scaf method. More...
void	CGC_SequenceStats_Base::ResetOrdered_scaf (void)
	Reset Ordered_scaf data member. More...
const TOrdered_scaf &	CGC_SequenceStats_Base::GetOrdered_scaf (void) const
	Get the Ordered_scaf member data. More...
TOrdered_scaf &	CGC_SequenceStats_Base::SetOrdered_scaf (void)
	Assign a value to Ordered_scaf data member. More...
bool	CGC_SequenceStats_Base::IsSetUnordered_scaf (void) const
	Check if a value has been assigned to Unordered_scaf data member. More...
bool	CGC_SequenceStats_Base::CanGetUnordered_scaf (void) const
	Check if it is safe to call GetUnordered_scaf method. More...
void	CGC_SequenceStats_Base::ResetUnordered_scaf (void)
	Reset Unordered_scaf data member. More...
const TUnordered_scaf &	CGC_SequenceStats_Base::GetUnordered_scaf (void) const
	Get the Unordered_scaf member data. More...
TUnordered_scaf &	CGC_SequenceStats_Base::SetUnordered_scaf (void)
	Assign a value to Unordered_scaf data member. More...
bool	CGC_SequenceStats_Base::IsSetUnplaced_scaf (void) const
	unplaced at full assembly level Check if a value has been assigned to Unplaced_scaf data member. More...
bool	CGC_SequenceStats_Base::CanGetUnplaced_scaf (void) const
	Check if it is safe to call GetUnplaced_scaf method. More...
void	CGC_SequenceStats_Base::ResetUnplaced_scaf (void)
	Reset Unplaced_scaf data member. More...
const TUnplaced_scaf &	CGC_SequenceStats_Base::GetUnplaced_scaf (void) const
	Get the Unplaced_scaf member data. More...
TUnplaced_scaf &	CGC_SequenceStats_Base::SetUnplaced_scaf (void)
	Assign a value to Unplaced_scaf data member. More...
bool	CGC_SequenceStats_Base::IsSetAligned_scaf (void) const
	aligned at full assembly level Check if a value has been assigned to Aligned_scaf data member. More...
bool	CGC_SequenceStats_Base::CanGetAligned_scaf (void) const
	Check if it is safe to call GetAligned_scaf method. More...
void	CGC_SequenceStats_Base::ResetAligned_scaf (void)
	Reset Aligned_scaf data member. More...
const TAligned_scaf &	CGC_SequenceStats_Base::GetAligned_scaf (void) const
	Get the Aligned_scaf member data. More...
TAligned_scaf &	CGC_SequenceStats_Base::SetAligned_scaf (void)
	Assign a value to Aligned_scaf data member. More...
bool	CGC_SequenceStats_Base::IsSetUnaligned_scaf (void) const
	unaligned at full assembly level Check if a value has been assigned to Unaligned_scaf data member. More...
bool	CGC_SequenceStats_Base::CanGetUnaligned_scaf (void) const
	Check if it is safe to call GetUnaligned_scaf method. More...
void	CGC_SequenceStats_Base::ResetUnaligned_scaf (void)
	Reset Unaligned_scaf data member. More...
const TUnaligned_scaf &	CGC_SequenceStats_Base::GetUnaligned_scaf (void) const
	Get the Unaligned_scaf member data. More...
TUnaligned_scaf &	CGC_SequenceStats_Base::SetUnaligned_scaf (void)
	Assign a value to Unaligned_scaf data member. More...
virtual void	CGC_SequenceStats_Base::Reset (void)
	Reset the whole object. More...
	CGC_SequenceStats_Base::CGC_SequenceStats_Base (const CGC_SequenceStats_Base &)
CGC_SequenceStats_Base &	CGC_SequenceStats_Base::operator= (const CGC_SequenceStats_Base &)
	CGC_TaggedSequences::CGC_TaggedSequences (void)
	CGC_TaggedSequences::~CGC_TaggedSequences (void)
	CGC_TaggedSequences::CGC_TaggedSequences (const CGC_TaggedSequences &value)
CGC_TaggedSequences &	CGC_TaggedSequences::operator= (const CGC_TaggedSequences &value)
	CGC_TaggedSequences_Base::CGC_TaggedSequences_Base (void)
virtual	CGC_TaggedSequences_Base::~CGC_TaggedSequences_Base (void)
	CGC_TaggedSequences_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CGC_TaggedSequences_Base::EState (void)
	Access to EState's attributes (values, names) as defined in spec. More...
bool	CGC_TaggedSequences_Base::IsSetState (void) const
	Check if a value has been assigned to State data member. More...
bool	CGC_TaggedSequences_Base::CanGetState (void) const
	Check if it is safe to call GetState method. More...
void	CGC_TaggedSequences_Base::ResetState (void)
	Reset State data member. More...
TState	CGC_TaggedSequences_Base::GetState (void) const
	Get the State member data. More...
void	CGC_TaggedSequences_Base::SetState (TState value)
	Assign a value to State data member. More...
TState &	CGC_TaggedSequences_Base::SetState (void)
	Assign a value to State data member. More...
bool	CGC_TaggedSequences_Base::IsSetSeqs (void) const
	Check if a value has been assigned to Seqs data member. More...
bool	CGC_TaggedSequences_Base::CanGetSeqs (void) const
	Check if it is safe to call GetSeqs method. More...
void	CGC_TaggedSequences_Base::ResetSeqs (void)
	Reset Seqs data member. More...
const TSeqs &	CGC_TaggedSequences_Base::GetSeqs (void) const
	Get the Seqs member data. More...
TSeqs &	CGC_TaggedSequences_Base::SetSeqs (void)
	Assign a value to Seqs data member. More...
virtual void	CGC_TaggedSequences_Base::Reset (void)
	Reset the whole object. More...
	CGC_TaggedSequences_Base::CGC_TaggedSequences_Base (const CGC_TaggedSequences_Base &)
CGC_TaggedSequences_Base &	CGC_TaggedSequences_Base::operator= (const CGC_TaggedSequences_Base &)
	CGC_TypedSeqId::CGC_TypedSeqId (void)
	CGC_TypedSeqId::~CGC_TypedSeqId (void)
	CGC_TypedSeqId::CGC_TypedSeqId (const CGC_TypedSeqId &value)
CGC_TypedSeqId &	CGC_TypedSeqId::operator= (const CGC_TypedSeqId &value)
	CGC_TypedSeqId_Base::CGC_TypedSeqId_Base (void)
virtual	CGC_TypedSeqId_Base::~CGC_TypedSeqId_Base (void)
	CGC_TypedSeqId_Base::DECLARE_INTERNAL_TYPE_INFO ()
virtual void	CGC_TypedSeqId_Base::Reset (void)
	Reset the whole object. More...
virtual void	CGC_TypedSeqId_Base::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CGC_TypedSeqId_Base::Which (void) const
	Which variant is currently selected. More...
void	CGC_TypedSeqId_Base::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CGC_TypedSeqId_Base::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CGC_TypedSeqId_Base::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CGC_TypedSeqId_Base::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CGC_TypedSeqId_Base::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CGC_TypedSeqId_Base::IsGenbank (void) const
	Check if variant Genbank is selected. More...
const TGenbank &	CGC_TypedSeqId_Base::GetGenbank (void) const
	Get the variant data. More...
TGenbank &	CGC_TypedSeqId_Base::SetGenbank (void)
	Select the variant. More...
void	CGC_TypedSeqId_Base::SetGenbank (TGenbank &value)
	Select the variant and set its data. More...
bool	CGC_TypedSeqId_Base::IsRefseq (void) const
	Check if variant Refseq is selected. More...
const TRefseq &	CGC_TypedSeqId_Base::GetRefseq (void) const
	Get the variant data. More...
TRefseq &	CGC_TypedSeqId_Base::SetRefseq (void)
	Select the variant. More...
void	CGC_TypedSeqId_Base::SetRefseq (TRefseq &value)
	Select the variant and set its data. More...
bool	CGC_TypedSeqId_Base::IsPrivate (void) const
	Check if variant Private is selected. More...
const TPrivate &	CGC_TypedSeqId_Base::GetPrivate (void) const
	Get the variant data. More...
TPrivate &	CGC_TypedSeqId_Base::SetPrivate (void)
	Select the variant. More...
void	CGC_TypedSeqId_Base::SetPrivate (TPrivate &value)
	Select the variant and set its data. More...
bool	CGC_TypedSeqId_Base::IsExternal (void) const
	Check if variant External is selected. More...
const TExternal &	CGC_TypedSeqId_Base::GetExternal (void) const
	Get the variant data. More...
TExternal &	CGC_TypedSeqId_Base::SetExternal (void)
	Select the variant. More...
void	CGC_TypedSeqId_Base::SetExternal (TExternal &value)
	Select the variant and set its data. More...
	CGC_TypedSeqId_Base::CGC_TypedSeqId_Base (const CGC_TypedSeqId_Base &)
CGC_TypedSeqId_Base &	CGC_TypedSeqId_Base::operator= (const CGC_TypedSeqId_Base &)
void	CGC_TypedSeqId_Base::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)

Variables
Uint4	CGC_Assemblies_Base::m_set_State [1]
list< CRef< CGC_Query > >	CGC_Assemblies_Base::m_Query
list< CRef< CGC_Assembly > >	CGC_Assemblies_Base::m_Assemblies
E_Choice	CGC_Assembly_Base::m_choice
static const char *const	CGC_Assembly_Base::sm_SelectionNames []
NCBI_NS_NCBI::CSerialObject *	CGC_Assembly_Base::m_object
Uint4	CGC_AssemblyDesc_Base::m_set_State [2]
list< CRef< CGC_Project > >	CGC_AssemblyDesc_Base::m_Projects
string	CGC_AssemblyDesc_Base::m_Name
string	CGC_AssemblyDesc_Base::m_Submitter_name
string	CGC_AssemblyDesc_Base::m_Display_name
CStringUTF8	CGC_AssemblyDesc_Base::m_Long_name
string	CGC_AssemblyDesc_Base::m_Filesafe_name
string	CGC_AssemblyDesc_Base::m_Wgs_acc_prefix
int	CGC_AssemblyDesc_Base::m_Wgs_acc_number
int	CGC_AssemblyDesc_Base::m_Release_type
int	CGC_AssemblyDesc_Base::m_Release_status
list< CRef< CSeq_annot > >	CGC_AssemblyDesc_Base::m_Annot
list< CRef< CGC_DbTagAlias > >	CGC_AssemblyDesc_Base::m_Synonyms
CRef< TSubmitter_date >	CGC_AssemblyDesc_Base::m_Submitter_date
CRef< TDescr >	CGC_AssemblyDesc_Base::m_Descr
bool	CGC_AssemblyDesc_Base::m_Partial
double	CGC_AssemblyDesc_Base::m_Coverage
int	CGC_AssemblyDesc_Base::m_Release_level
CStringUTF8	CGC_AssemblyDesc_Base::m_Submitter_organization
Uint4	CGC_AssemblySet_Base::m_set_State [1]
list< CRef< CDbtag > >	CGC_AssemblySet_Base::m_Id
int	CGC_AssemblySet_Base::m_Set_type
int	CGC_AssemblySet_Base::m_Class
CRef< TDesc >	CGC_AssemblySet_Base::m_Desc
CRef< TPrimary_assembly >	CGC_AssemblySet_Base::m_Primary_assembly
list< CRef< CGC_Assembly > >	CGC_AssemblySet_Base::m_More_assemblies
CRef< TStats >	CGC_AssemblySet_Base::m_Stats
Uint4	CGC_AssemblyUnit_Base::m_set_State [1]
list< CRef< CDbtag > >	CGC_AssemblyUnit_Base::m_Id
int	CGC_AssemblyUnit_Base::m_Class
CRef< TDesc >	CGC_AssemblyUnit_Base::m_Desc
list< CRef< CGC_Replicon > >	CGC_AssemblyUnit_Base::m_Mols
list< CRef< CGC_TaggedSequences > >	CGC_AssemblyUnit_Base::m_Other_sequences
CRef< TStats >	CGC_AssemblyUnit_Base::m_Stats
list< CRef< CGC_Scaf_stats > >	CGC_AssemblyUnit_Base::m_Unplaced_stats
list< CRef< CGC_Scaf_stats > >	CGC_AssemblyUnit_Base::m_Unplaced_unlocalized_stats
Uint4	CGC_DbTagAlias_Base::m_set_State [1]
CRef< TRefseq >	CGC_DbTagAlias_Base::m_Refseq
CRef< TGenbank >	CGC_DbTagAlias_Base::m_Genbank
int	CGC_DbTagAlias_Base::m_Similarity
Uint4	CGC_External_Seqid_Base::m_set_State [1]
string	CGC_External_Seqid_Base::m_External
CRef< TId >	CGC_External_Seqid_Base::m_Id
Uint4	CGC_Genome_Base::m_set_State [1]
list< CRef< CDbtag > >	CGC_Genome_Base::m_Id
list< CRef< CGC_Project > >	CGC_Genome_Base::m_Projects
CRef< TDescr >	CGC_Genome_Base::m_Descr
list< string >	CGC_Genome_Base::m_Chr_names
list< CRef< CGC_GenomicPart > >	CGC_Genome_Base::m_Parts
E_Choice	CGC_GenomicPart_Base::m_choice
static const char *const	CGC_GenomicPart_Base::sm_SelectionNames []
NCBI_NS_NCBI::CSerialObject *	CGC_GenomicPart_Base::m_object
Uint4	CGC_Project_Base::m_set_State [1]
string	CGC_Project_Base::m_Project_role
int	CGC_Project_Base::m_Project_id
Uint4	CGC_Query_Base::m_set_State [1]
string	CGC_Query_Base::m_Param
string	CGC_Query_Base::m_Value
E_Choice	CGC_Replicon_Base::C_Sequence::m_choice
static const char *const	CGC_Replicon_Base::C_Sequence::sm_SelectionNames []
NCBI_NS_NCBI::CUnionBuffer< TSet >   CGC_Replicon_Base::C_Sequence::m_Set
NCBI_NS_NCBI::CSerialObject *   CGC_Replicon_Base::C_Sequence::m_object
union {
NCBI_NS_NCBI::CUnionBuffer< TSet >   CGC_Replicon_Base::C_Sequence::m_Set
NCBI_NS_NCBI::CSerialObject *   CGC_Replicon_Base::C_Sequence::m_object
};
Uint4	CGC_Replicon_Base::m_set_State [1]
string	CGC_Replicon_Base::m_Name
string	CGC_Replicon_Base::m_Local_name
CRef< TSequence >	CGC_Replicon_Base::m_Sequence
Uint4	CGC_Scaf_stats_Base::m_set_State [1]
int	CGC_Scaf_stats_Base::m_Stats_category
Uint8	CGC_Scaf_stats_Base::m_Value
Uint4	CGC_SeqIdAlias_Base::m_set_State [1]
CRef< TPublic >	CGC_SeqIdAlias_Base::m_Public
CRef< TGpipe >	CGC_SeqIdAlias_Base::m_Gpipe
CRef< TGi >	CGC_SeqIdAlias_Base::m_Gi
int	CGC_SeqIdAlias_Base::m_Similarity
Uint4	CGC_Sequence_Base::m_set_State [1]
CRef< TSeq_id >	CGC_Sequence_Base::m_Seq_id
list< CRef< CGC_TypedSeqId > >	CGC_Sequence_Base::m_Seq_id_synonyms
CRef< TDescr >	CGC_Sequence_Base::m_Descr
list< CRef< CSeq_annot > >	CGC_Sequence_Base::m_Annot
list< CRef< CGC_TaggedSequences > >	CGC_Sequence_Base::m_Sequences
CRef< TStructure >	CGC_Sequence_Base::m_Structure
CRef< TStats >	CGC_Sequence_Base::m_Stats
int	CGC_Sequence_Base::m_Patch_type
list< int >	CGC_Sequence_Base::m_Roles
Uint4	CGC_SequenceStats_Base::m_set_State [1]
list< CRef< CGC_Scaf_stats > >	CGC_SequenceStats_Base::m_All_scaf
list< CRef< CGC_Scaf_stats > >	CGC_SequenceStats_Base::m_Ordered_scaf
list< CRef< CGC_Scaf_stats > >	CGC_SequenceStats_Base::m_Unordered_scaf
list< CRef< CGC_Scaf_stats > >	CGC_SequenceStats_Base::m_Unplaced_scaf
list< CRef< CGC_Scaf_stats > >	CGC_SequenceStats_Base::m_Aligned_scaf
list< CRef< CGC_Scaf_stats > >	CGC_SequenceStats_Base::m_Unaligned_scaf
Uint4	CGC_TaggedSequences_Base::m_set_State [1]
int	CGC_TaggedSequences_Base::m_State
list< CRef< CGC_Sequence > >	CGC_TaggedSequences_Base::m_Seqs
E_Choice	CGC_TypedSeqId_Base::m_choice
static const char *const	CGC_TypedSeqId_Base::sm_SelectionNames []
NCBI_NS_NCBI::CSerialObject *	CGC_TypedSeqId_Base::m_object

Detailed Description

Typedef Documentation

TAligned_scaf

typedef list< CRef< CGC_Scaf_stats > > CGC_SequenceStats_Base::TAligned_scaf

Definition at line 95 of file GC_SequenceStats_.hpp.

TAll_scaf

typedef list< CRef< CGC_Scaf_stats > > CGC_SequenceStats_Base::TAll_scaf

Definition at line 91 of file GC_SequenceStats_.hpp.

TAnnot [1/2]

typedef list< CRef< CSeq_annot > > CGC_AssemblyDesc_Base::TAnnot

Definition at line 137 of file GC_AssemblyDesc_.hpp.

TAnnot [2/2]

typedef list< CRef< CSeq_annot > > CGC_Sequence_Base::TAnnot

Definition at line 118 of file GC_Sequence_.hpp.

TAssemblies

typedef list< CRef< CGC_Assembly > > CGC_Assemblies_Base::TAssemblies

Definition at line 91 of file GC_Assemblies_.hpp.

TAssembly

typedef CGC_Assembly CGC_GenomicPart_Base::TAssembly

Definition at line 147 of file GC_GenomicPart_.hpp.

TAssembly_set

typedef CGC_AssemblySet CGC_Assembly_Base::TAssembly_set

Definition at line 149 of file GC_Assembly_.hpp.

TChr_names

typedef list< string > CGC_Genome_Base::TChr_names

Definition at line 96 of file GC_Genome_.hpp.

TClass [1/2]

typedef int CGC_AssemblySet_Base::TClass

Definition at line 121 of file GC_AssemblySet_.hpp.

TClass [2/2]

typedef int CGC_AssemblyUnit_Base::TClass

Definition at line 106 of file GC_AssemblyUnit_.hpp.

TCoverage

typedef double CGC_AssemblyDesc_Base::TCoverage

Definition at line 142 of file GC_AssemblyDesc_.hpp.

TDesc [1/2]

typedef CGC_AssemblyDesc CGC_AssemblySet_Base::TDesc

Definition at line 122 of file GC_AssemblySet_.hpp.

TDesc [2/2]

typedef CGC_AssemblyDesc CGC_AssemblyUnit_Base::TDesc

Definition at line 107 of file GC_AssemblyUnit_.hpp.

TDescr [1/3]

typedef CSeq_descr CGC_AssemblyDesc_Base::TDescr

Definition at line 140 of file GC_AssemblyDesc_.hpp.

TDescr [2/3]

typedef CSeq_descr CGC_Genome_Base::TDescr

Definition at line 95 of file GC_Genome_.hpp.

TDescr [3/3]

typedef CSeq_descr CGC_Sequence_Base::TDescr

Definition at line 117 of file GC_Sequence_.hpp.

TDisplay_name

typedef string CGC_AssemblyDesc_Base::TDisplay_name

Definition at line 130 of file GC_AssemblyDesc_.hpp.

TExternal [1/2]

typedef string CGC_External_Seqid_Base::TExternal

Definition at line 89 of file GC_External_Seqid_.hpp.

TExternal [2/2]

typedef CGC_External_Seqid CGC_TypedSeqId_Base::TExternal

Definition at line 151 of file GC_TypedSeqId_.hpp.

TFilesafe_name

typedef string CGC_AssemblyDesc_Base::TFilesafe_name

Definition at line 132 of file GC_AssemblyDesc_.hpp.

TGenbank [1/2]

typedef CDbtag CGC_DbTagAlias_Base::TGenbank

Definition at line 100 of file GC_DbTagAlias_.hpp.

TGenbank [2/2]

typedef CGC_SeqIdAlias CGC_TypedSeqId_Base::TGenbank

Definition at line 148 of file GC_TypedSeqId_.hpp.

TGi

typedef CSeq_id CGC_SeqIdAlias_Base::TGi

Definition at line 102 of file GC_SeqIdAlias_.hpp.

TGpipe

typedef CSeq_id CGC_SeqIdAlias_Base::TGpipe

Definition at line 101 of file GC_SeqIdAlias_.hpp.

TId [1/4]

typedef list< CRef< CDbtag > > CGC_AssemblySet_Base::TId

Definition at line 119 of file GC_AssemblySet_.hpp.

TId [2/4]

typedef list< CRef< CDbtag > > CGC_AssemblyUnit_Base::TId

Definition at line 105 of file GC_AssemblyUnit_.hpp.

TId [3/4]

typedef CSeq_id CGC_External_Seqid_Base::TId

Definition at line 90 of file GC_External_Seqid_.hpp.

TId [4/4]

typedef list< CRef< CDbtag > > CGC_Genome_Base::TId

Definition at line 93 of file GC_Genome_.hpp.

TLocal_name

typedef string CGC_Replicon_Base::TLocal_name

Definition at line 241 of file GC_Replicon_.hpp.

TLong_name

typedef CStringUTF8 CGC_AssemblyDesc_Base::TLong_name

Definition at line 131 of file GC_AssemblyDesc_.hpp.

TmemberIndex [1/15]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CGC_Assemblies_Base::TmemberIndex

Definition at line 99 of file GC_Assemblies_.hpp.

TmemberIndex [2/15]

typedef Tparent::CMemberIndex<E_memberIndex, 19> CGC_AssemblyDesc_Base::TmemberIndex

Definition at line 168 of file GC_AssemblyDesc_.hpp.

TmemberIndex [3/15]

typedef Tparent::CMemberIndex<E_memberIndex, 8> CGC_AssemblySet_Base::TmemberIndex

Definition at line 138 of file GC_AssemblySet_.hpp.

TmemberIndex [4/15]

typedef Tparent::CMemberIndex<E_memberIndex, 9> CGC_AssemblyUnit_Base::TmemberIndex

Definition at line 126 of file GC_AssemblyUnit_.hpp.

TmemberIndex [5/15]

typedef Tparent::CMemberIndex<E_memberIndex, 4> CGC_DbTagAlias_Base::TmemberIndex

Definition at line 110 of file GC_DbTagAlias_.hpp.

TmemberIndex [6/15]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CGC_External_Seqid_Base::TmemberIndex

Definition at line 98 of file GC_External_Seqid_.hpp.

TmemberIndex [7/15]

typedef Tparent::CMemberIndex<E_memberIndex, 6> CGC_Genome_Base::TmemberIndex

Definition at line 108 of file GC_Genome_.hpp.

TmemberIndex [8/15]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CGC_Project_Base::TmemberIndex

Definition at line 94 of file GC_Project_.hpp.

TmemberIndex [9/15]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CGC_Query_Base::TmemberIndex

Definition at line 98 of file GC_Query_.hpp.

TmemberIndex [10/15]

typedef Tparent::CMemberIndex<E_memberIndex, 4> CGC_Replicon_Base::TmemberIndex

Definition at line 251 of file GC_Replicon_.hpp.

TmemberIndex [11/15]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CGC_Scaf_stats_Base::TmemberIndex

Definition at line 171 of file GC_Scaf_stats_.hpp.

TmemberIndex [12/15]

typedef Tparent::CMemberIndex<E_memberIndex, 5> CGC_SeqIdAlias_Base::TmemberIndex

Definition at line 113 of file GC_SeqIdAlias_.hpp.

TmemberIndex [13/15]

typedef Tparent::CMemberIndex<E_memberIndex, 10> CGC_Sequence_Base::TmemberIndex

Definition at line 138 of file GC_Sequence_.hpp.

TmemberIndex [14/15]

typedef Tparent::CMemberIndex<E_memberIndex, 7> CGC_SequenceStats_Base::TmemberIndex

Definition at line 108 of file GC_SequenceStats_.hpp.

TmemberIndex [15/15]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CGC_TaggedSequences_Base::TmemberIndex

Definition at line 111 of file GC_TaggedSequences_.hpp.

TMol

typedef CGC_Replicon CGC_GenomicPart_Base::TMol

Definition at line 148 of file GC_GenomicPart_.hpp.

TMols

typedef list< CRef< CGC_Replicon > > CGC_AssemblyUnit_Base::TMols

Definition at line 108 of file GC_AssemblyUnit_.hpp.

TMore_assemblies

typedef list< CRef< CGC_Assembly > > CGC_AssemblySet_Base::TMore_assemblies

Definition at line 124 of file GC_AssemblySet_.hpp.

TName [1/2]

typedef string CGC_AssemblyDesc_Base::TName

Definition at line 128 of file GC_AssemblyDesc_.hpp.

TName [2/2]

typedef string CGC_Replicon_Base::TName

Definition at line 240 of file GC_Replicon_.hpp.

TOrdered_scaf

typedef list< CRef< CGC_Scaf_stats > > CGC_SequenceStats_Base::TOrdered_scaf

Definition at line 92 of file GC_SequenceStats_.hpp.

TOther_sequences

typedef list< CRef< CGC_TaggedSequences > > CGC_AssemblyUnit_Base::TOther_sequences

Definition at line 109 of file GC_AssemblyUnit_.hpp.

TParam

typedef string CGC_Query_Base::TParam

Definition at line 89 of file GC_Query_.hpp.

Tparent [1/31]

typedef CGC_Assemblies_Base CGC_Assemblies::Tparent

private

Definition at line 67 of file GC_Assemblies.hpp.

Tparent [2/31]

typedef CSerialObject CGC_Assemblies_Base::Tparent

private

Definition at line 79 of file GC_Assemblies_.hpp.

Tparent [3/31]

typedef CSerialObject CGC_Assembly_Base::Tparent

private

Definition at line 78 of file GC_Assembly_.hpp.

Tparent [4/31]

typedef CGC_AssemblyDesc_Base CGC_AssemblyDesc::Tparent

private

Definition at line 67 of file GC_AssemblyDesc.hpp.

Tparent [5/31]

typedef CSerialObject CGC_AssemblyDesc_Base::Tparent

private

Definition at line 83 of file GC_AssemblyDesc_.hpp.

Tparent [6/31]

typedef CSerialObject CGC_AssemblySet_Base::Tparent

private

Definition at line 81 of file GC_AssemblySet_.hpp.

Tparent [7/31]

typedef CSerialObject CGC_AssemblyUnit_Base::Tparent

private

Definition at line 83 of file GC_AssemblyUnit_.hpp.

Tparent [8/31]

typedef CGC_DbTagAlias_Base CGC_DbTagAlias::Tparent

private

Definition at line 67 of file GC_DbTagAlias.hpp.

Tparent [9/31]

typedef CSerialObject CGC_DbTagAlias_Base::Tparent

private

Definition at line 76 of file GC_DbTagAlias_.hpp.

Tparent [10/31]

typedef CGC_External_Seqid_Base CGC_External_Seqid::Tparent

private

Definition at line 67 of file GC_External_Seqid.hpp.

Tparent [11/31]

typedef CSerialObject CGC_External_Seqid_Base::Tparent

private

Definition at line 78 of file GC_External_Seqid_.hpp.

Tparent [12/31]

typedef CGC_Genome_Base CGC_Genome::Tparent

private

Definition at line 67 of file GC_Genome.hpp.

Tparent [13/31]

typedef CSerialObject CGC_Genome_Base::Tparent

private

Definition at line 82 of file GC_Genome_.hpp.

Tparent [14/31]

typedef CGC_GenomicPart_Base CGC_GenomicPart::Tparent

private

Definition at line 67 of file GC_GenomicPart.hpp.

Tparent [15/31]

typedef CSerialObject CGC_GenomicPart_Base::Tparent

private

Definition at line 76 of file GC_GenomicPart_.hpp.

Tparent [16/31]

typedef CGC_Project_Base CGC_Project::Tparent

private

Definition at line 67 of file GC_Project.hpp.

Tparent [17/31]

typedef CSerialObject CGC_Project_Base::Tparent

private

Definition at line 74 of file GC_Project_.hpp.

Tparent [18/31]

typedef CGC_Query_Base CGC_Query::Tparent

private

Definition at line 67 of file GC_Query.hpp.

Tparent [19/31]

typedef CSerialObject CGC_Query_Base::Tparent

private

Definition at line 78 of file GC_Query_.hpp.

Tparent [20/31]

typedef CSerialObject CGC_Replicon_Base::Tparent

private

Definition at line 79 of file GC_Replicon_.hpp.

Tparent [21/31]

typedef CSerialObject CGC_Replicon_Base::C_Sequence::Tparent

private

Definition at line 99 of file GC_Replicon_.hpp.

Tparent [22/31]

typedef CGC_Scaf_stats_Base CGC_Scaf_stats::Tparent

private

Definition at line 67 of file GC_Scaf_stats.hpp.

Tparent [23/31]

typedef CSerialObject CGC_Scaf_stats_Base::Tparent

private

Definition at line 70 of file GC_Scaf_stats_.hpp.

Tparent [24/31]

typedef CSerialObject CGC_SeqIdAlias_Base::Tparent

private

Definition at line 80 of file GC_SeqIdAlias_.hpp.

Tparent [25/31]

typedef CSerialObject CGC_Sequence_Base::Tparent

private

Definition at line 95 of file GC_Sequence_.hpp.

Tparent [26/31]

typedef CGC_SequenceStats_Base CGC_SequenceStats::Tparent

private

Definition at line 67 of file GC_SequenceStats.hpp.

Tparent [27/31]

typedef CSerialObject CGC_SequenceStats_Base::Tparent

private

Definition at line 80 of file GC_SequenceStats_.hpp.

Tparent [28/31]

typedef CGC_TaggedSequences_Base CGC_TaggedSequences::Tparent

private

Definition at line 67 of file GC_TaggedSequences.hpp.

Tparent [29/31]

typedef CSerialObject CGC_TaggedSequences_Base::Tparent

private

Definition at line 79 of file GC_TaggedSequences_.hpp.

Tparent [30/31]

typedef CGC_TypedSeqId_Base CGC_TypedSeqId::Tparent

private

Definition at line 67 of file GC_TypedSeqId.hpp.

Tparent [31/31]

typedef CSerialObject CGC_TypedSeqId_Base::Tparent

private

Definition at line 76 of file GC_TypedSeqId_.hpp.

TPartial

typedef bool CGC_AssemblyDesc_Base::TPartial

Definition at line 141 of file GC_AssemblyDesc_.hpp.

TParts

typedef list< CRef< CGC_GenomicPart > > CGC_Genome_Base::TParts

Definition at line 97 of file GC_Genome_.hpp.

TPatch_type

typedef int CGC_Sequence_Base::TPatch_type

Definition at line 122 of file GC_Sequence_.hpp.

TPrimary_assembly

typedef CGC_Assembly CGC_AssemblySet_Base::TPrimary_assembly

Definition at line 123 of file GC_AssemblySet_.hpp.

TPrivate

typedef CSeq_id CGC_TypedSeqId_Base::TPrivate

Definition at line 150 of file GC_TypedSeqId_.hpp.

TProject_id

typedef int CGC_Project_Base::TProject_id

Definition at line 86 of file GC_Project_.hpp.

TProject_role

typedef string CGC_Project_Base::TProject_role

Definition at line 85 of file GC_Project_.hpp.

TProjects [1/2]

typedef list< CRef< CGC_Project > > CGC_AssemblyDesc_Base::TProjects

Definition at line 127 of file GC_AssemblyDesc_.hpp.

TProjects [2/2]

typedef list< CRef< CGC_Project > > CGC_Genome_Base::TProjects

Definition at line 94 of file GC_Genome_.hpp.

TPublic

typedef CSeq_id CGC_SeqIdAlias_Base::TPublic

Definition at line 100 of file GC_SeqIdAlias_.hpp.

TQuery

typedef list< CRef< CGC_Query > > CGC_Assemblies_Base::TQuery

Definition at line 90 of file GC_Assemblies_.hpp.

TRefseq [1/2]

typedef CDbtag CGC_DbTagAlias_Base::TRefseq

Definition at line 99 of file GC_DbTagAlias_.hpp.

TRefseq [2/2]

typedef CGC_SeqIdAlias CGC_TypedSeqId_Base::TRefseq

Definition at line 149 of file GC_TypedSeqId_.hpp.

TRelease_level

typedef int CGC_AssemblyDesc_Base::TRelease_level

Definition at line 143 of file GC_AssemblyDesc_.hpp.

TRelease_status

typedef int CGC_AssemblyDesc_Base::TRelease_status

Definition at line 136 of file GC_AssemblyDesc_.hpp.

TRelease_type

typedef int CGC_AssemblyDesc_Base::TRelease_type

Definition at line 135 of file GC_AssemblyDesc_.hpp.

TRoles

typedef list< int > CGC_Sequence_Base::TRoles

Definition at line 123 of file GC_Sequence_.hpp.

TSeq_id

typedef CSeq_id CGC_Sequence_Base::TSeq_id

Definition at line 115 of file GC_Sequence_.hpp.

TSeq_id_synonyms

typedef list< CRef< CGC_TypedSeqId > > CGC_Sequence_Base::TSeq_id_synonyms

Definition at line 116 of file GC_Sequence_.hpp.

TSeqs [1/2]

typedef CGC_Sequence CGC_GenomicPart_Base::TSeqs

Definition at line 149 of file GC_GenomicPart_.hpp.

TSeqs [2/2]

typedef list< CRef< CGC_Sequence > > CGC_TaggedSequences_Base::TSeqs

Definition at line 103 of file GC_TaggedSequences_.hpp.

TSequence

typedef C_Sequence CGC_Replicon_Base::TSequence

Definition at line 242 of file GC_Replicon_.hpp.

TSequences

typedef list< CRef< CGC_TaggedSequences > > CGC_Sequence_Base::TSequences

Definition at line 119 of file GC_Sequence_.hpp.

TSet

typedef list< CRef< CGC_Sequence > > CGC_Replicon_Base::C_Sequence::TSet

Definition at line 170 of file GC_Replicon_.hpp.

TSet_type

typedef int CGC_AssemblySet_Base::TSet_type

Definition at line 120 of file GC_AssemblySet_.hpp.

TSimilarity [1/2]

typedef int CGC_DbTagAlias_Base::TSimilarity

Definition at line 101 of file GC_DbTagAlias_.hpp.

TSimilarity [2/2]

typedef int CGC_SeqIdAlias_Base::TSimilarity

Definition at line 103 of file GC_SeqIdAlias_.hpp.

TSingle

typedef CGC_Sequence CGC_Replicon_Base::C_Sequence::TSingle

Definition at line 169 of file GC_Replicon_.hpp.

TState

typedef int CGC_TaggedSequences_Base::TState

Definition at line 102 of file GC_TaggedSequences_.hpp.

TStats [1/3]

typedef CGC_SequenceStats CGC_AssemblySet_Base::TStats

Definition at line 125 of file GC_AssemblySet_.hpp.

TStats [2/3]

typedef CGC_SequenceStats CGC_AssemblyUnit_Base::TStats

Definition at line 110 of file GC_AssemblyUnit_.hpp.

TStats [3/3]

typedef CGC_SequenceStats CGC_Sequence_Base::TStats

Definition at line 121 of file GC_Sequence_.hpp.

TStats_category

typedef int CGC_Scaf_stats_Base::TStats_category

Definition at line 162 of file GC_Scaf_stats_.hpp.

TStructure

typedef CDelta_ext CGC_Sequence_Base::TStructure

Definition at line 120 of file GC_Sequence_.hpp.

TSubmitter_date

typedef CDate CGC_AssemblyDesc_Base::TSubmitter_date

Definition at line 139 of file GC_AssemblyDesc_.hpp.

TSubmitter_name

typedef string CGC_AssemblyDesc_Base::TSubmitter_name

Definition at line 129 of file GC_AssemblyDesc_.hpp.

TSubmitter_organization

typedef CStringUTF8 CGC_AssemblyDesc_Base::TSubmitter_organization

Definition at line 144 of file GC_AssemblyDesc_.hpp.

TSynonyms

typedef list< CRef< CGC_DbTagAlias > > CGC_AssemblyDesc_Base::TSynonyms

Definition at line 138 of file GC_AssemblyDesc_.hpp.

TUnaligned_scaf

typedef list< CRef< CGC_Scaf_stats > > CGC_SequenceStats_Base::TUnaligned_scaf

Definition at line 96 of file GC_SequenceStats_.hpp.

TUnit

typedef CGC_AssemblyUnit CGC_Assembly_Base::TUnit

Definition at line 148 of file GC_Assembly_.hpp.

TUnordered_scaf

typedef list< CRef< CGC_Scaf_stats > > CGC_SequenceStats_Base::TUnordered_scaf

Definition at line 93 of file GC_SequenceStats_.hpp.

TUnplaced_scaf

typedef list< CRef< CGC_Scaf_stats > > CGC_SequenceStats_Base::TUnplaced_scaf

Definition at line 94 of file GC_SequenceStats_.hpp.

TUnplaced_stats

typedef list< CRef< CGC_Scaf_stats > > CGC_AssemblyUnit_Base::TUnplaced_stats

Definition at line 111 of file GC_AssemblyUnit_.hpp.

TUnplaced_unlocalized_stats

typedef list< CRef< CGC_Scaf_stats > > CGC_AssemblyUnit_Base::TUnplaced_unlocalized_stats

Definition at line 112 of file GC_AssemblyUnit_.hpp.

TValue [1/2]

typedef string CGC_Query_Base::TValue

Definition at line 90 of file GC_Query_.hpp.

TValue [2/2]

typedef Uint8 CGC_Scaf_stats_Base::TValue

Definition at line 163 of file GC_Scaf_stats_.hpp.

TWgs_acc_number

typedef int CGC_AssemblyDesc_Base::TWgs_acc_number

Definition at line 134 of file GC_AssemblyDesc_.hpp.

TWgs_acc_prefix

typedef string CGC_AssemblyDesc_Base::TWgs_acc_prefix

Definition at line 133 of file GC_AssemblyDesc_.hpp.

Enumeration Type Documentation

E_Choice [1/4]

enum CGC_Assembly_Base::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Unit
e_Assembly_set

Definition at line 90 of file GC_Assembly_.hpp.

E_Choice [2/4]

enum CGC_GenomicPart_Base::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Assembly
e_Mol
e_Seqs

Definition at line 88 of file GC_GenomicPart_.hpp.

E_Choice [3/4]

enum CGC_Replicon_Base::C_Sequence::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Single
e_Set

Definition at line 111 of file GC_Replicon_.hpp.

E_Choice [4/4]

enum CGC_TypedSeqId_Base::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Genbank
e_Refseq
e_Private
e_External

Definition at line 88 of file GC_TypedSeqId_.hpp.

E_ChoiceStopper [1/4]

enum CGC_Assembly_Base::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Assembly_set+1

Definition at line 96 of file GC_Assembly_.hpp.

E_ChoiceStopper [2/4]

enum CGC_GenomicPart_Base::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Seqs+1

Definition at line 95 of file GC_GenomicPart_.hpp.

E_ChoiceStopper [3/4]

enum CGC_Replicon_Base::C_Sequence::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Set+1

Definition at line 117 of file GC_Replicon_.hpp.

E_ChoiceStopper [4/4]

enum CGC_TypedSeqId_Base::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_External+1

Definition at line 96 of file GC_TypedSeqId_.hpp.

E_memberIndex [1/15]

enum CGC_Assemblies_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_query
e_assemblies

Definition at line 94 of file GC_Assemblies_.hpp.

E_memberIndex [2/15]

enum CGC_AssemblyDesc_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_projects
e_name
e_submitter_name
e_display_name
e_long_name
e_filesafe_name
e_wgs_acc_prefix
e_wgs_acc_number
e_release_type
e_release_status
e_annot
e_synonyms
e_submitter_date
e_descr
e_partial
e_coverage
e_release_level
e_submitter_organization

Definition at line 147 of file GC_AssemblyDesc_.hpp.

E_memberIndex [3/15]

enum CGC_AssemblySet_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_id
e_set_type
e_class
e_desc
e_primary_assembly
e_more_assemblies
e_stats

Definition at line 128 of file GC_AssemblySet_.hpp.

E_memberIndex [4/15]

enum CGC_AssemblyUnit_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_id
e_class
e_desc
e_mols
e_other_sequences
e_stats
e_unplaced_stats
e_unplaced_unlocalized_stats

Definition at line 115 of file GC_AssemblyUnit_.hpp.

E_memberIndex [5/15]

enum CGC_DbTagAlias_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_refseq
e_genbank
e_similarity

Definition at line 104 of file GC_DbTagAlias_.hpp.

E_memberIndex [6/15]

enum CGC_External_Seqid_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_external
e_id

Definition at line 93 of file GC_External_Seqid_.hpp.

E_memberIndex [7/15]

enum CGC_Genome_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_id
e_projects
e_descr
e_chr_names
e_parts

Definition at line 100 of file GC_Genome_.hpp.

E_memberIndex [8/15]

enum CGC_Project_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_project_role
e_project_id

Definition at line 89 of file GC_Project_.hpp.

E_memberIndex [9/15]

enum CGC_Query_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_param
e_value

Definition at line 93 of file GC_Query_.hpp.

E_memberIndex [10/15]

enum CGC_Replicon_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_name
e_local_name
e_sequence

Definition at line 245 of file GC_Replicon_.hpp.

E_memberIndex [11/15]

enum CGC_Scaf_stats_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_stats_category
e_value

Definition at line 166 of file GC_Scaf_stats_.hpp.

E_memberIndex [12/15]

enum CGC_SeqIdAlias_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_public
e_gpipe
e_gi
e_similarity

Definition at line 106 of file GC_SeqIdAlias_.hpp.

E_memberIndex [13/15]

enum CGC_Sequence_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_seq_id
e_seq_id_synonyms
e_descr
e_annot
e_sequences
e_structure
e_stats
e_patch_type
e_roles

Definition at line 126 of file GC_Sequence_.hpp.

E_memberIndex [14/15]

enum CGC_SequenceStats_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_all_scaf
e_ordered_scaf
e_unordered_scaf
e_unplaced_scaf
e_aligned_scaf
e_unaligned_scaf

Definition at line 99 of file GC_SequenceStats_.hpp.

E_memberIndex [15/15]

enum CGC_TaggedSequences_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_state
e_seqs

Definition at line 106 of file GC_TaggedSequences_.hpp.

EClass [1/2]

enum CGC_AssemblySet_Base::EClass

'class' defines the semantics of how to interpret this item

Enumerator
eClass_full_assembly	general type of full-assembly (not expected to be used)
eClass_haploid	this assembly represents a single haploid assembly in its entirety
eClass_haploid_with_alt_loci	this assembly has exactly one unit and at least one alt-loci
eClass_diploid	assembly represents a diploid assembly; we expect at least two haploid-unit assemblies contained herein
eClass_unresolved_diploid	unresolved-diploid: single unit which includes the diploid sequences
eClass_alternate_haplotype	second part of diploid; linked to another haploid full-assembly this one is alt-loci or second full-haploid
eClass_alternate_pseudohaplotype
eClass_annotation_target_set	assembly is a collection for annotation
eClass_analysis_set	analysis set used for sequencing by alignments
eClass_other	stopper

Definition at line 102 of file GC_AssemblySet_.hpp.

EClass [2/2]

enum CGC_AssemblyUnit_Base::EClass

'class' defines the semantics of how to interpret this item

Enumerator
eClass_haploid_unit	units for haploid/diploid assemblies
eClass_alt_loci	this unit represents one or more alternate loci for a haploid assembly
eClass_assembly_patch	assembly-patch
eClass_other	stopper

Definition at line 94 of file GC_AssemblyUnit_.hpp.

EGC_SequenceRole

enum EGC_SequenceRole

sequence-role: what role(s) does this sequence have in the assembly a sequence may have more than one role.

Access to EGC_SequenceRole's attributes (values, names) as defined in spec.

e.g. a complete-sequence is all 4 roles pseudo-scaffold - this is for UCSC chr1_random etc submitter-pseudo-scaffold - this is for FlyBase pseudo scaffolds.

Enumerator
eGC_SequenceRole_chromosome
eGC_SequenceRole_scaffold
eGC_SequenceRole_component
eGC_SequenceRole_top_level
eGC_SequenceRole_pseudo_scaffold
eGC_SequenceRole_submitter_pseudo_scaffold

Definition at line 67 of file GC_SequenceRole_.hpp.

EPatch_type

enum CGC_Sequence_Base::EPatch_type

Enumerator
ePatch_type_novel
ePatch_type_fix
ePatch_type_other	stopper

Definition at line 105 of file GC_Sequence_.hpp.

ERelease_level

enum CGC_AssemblyDesc_Base::ERelease_level

release level: Most of releases are major

Enumerator
eRelease_level_major
eRelease_level_patch
eRelease_level_minor
eRelease_level_other	stopper

Definition at line 116 of file GC_AssemblyDesc_.hpp.

ERelease_status

enum CGC_AssemblyDesc_Base::ERelease_status

release status (numeric values have gaps for possible additional states

Enumerator
eRelease_status_new
eRelease_status_gpipe
eRelease_status_public
eRelease_status_suppressed
eRelease_status_hup
eRelease_status_withdrawn

Definition at line 103 of file GC_AssemblyDesc_.hpp.

ERelease_type

enum CGC_AssemblyDesc_Base::ERelease_type

release type: RefSeq / GenBank.

Enumerator
eRelease_type_genbank
eRelease_type_refseq

Definition at line 94 of file GC_AssemblyDesc_.hpp.

ESet_type

enum CGC_AssemblySet_Base::ESet_type

set type: Assembly-Sets can be of 2 categories

Enumerator
eSet_type_full_assembly	full-assembly: set of asm-units
eSet_type_assembly_set	set of full-assemblies stopper
eSet_type_other

Definition at line 92 of file GC_AssemblySet_.hpp.

ESimilarity [1/2]

enum CGC_DbTagAlias_Base::ESimilarity

Similarity: relationship between 2 assemblies represented by DbTags Can be expanded to multiple level of identicality can use bitmap to flag ambiguity between different identicality levels.

Enumerator
eSimilarity_unknown
eSimilarity_identical
eSimilarity_different

Definition at line 89 of file GC_DbTagAlias_.hpp.

ESimilarity [2/2]

enum CGC_SeqIdAlias_Base::ESimilarity

Enumerator
eSimilarity_unknown
eSimilarity_identical
eSimilarity_different

Definition at line 90 of file GC_SeqIdAlias_.hpp.

EState

enum CGC_TaggedSequences_Base::EState

Enumerator
eState_not_set	error
eState_placed	exist only within a replicon. placed sequences on higher sequence
eState_unlocalized	exist only within a replicon. "random" on a given chromosome
eState_unplaced	exist only on primary/diploid assembly-unit. unknown chromosome
eState_aligned	exist only on alt-loci/patch units. List all aligned (eg cross-placed) sequences. (unaligned are listed as unlocalized).
eState_bits	exist only on primary/diploid unit. if need to report low-level contigs

Definition at line 89 of file GC_TaggedSequences_.hpp.

EStats_category

enum CGC_Scaf_stats_Base::EStats_category

NOTE: These values equal to the stats_cd values in CodeStatistics table in GenomeColl.

Enumerator
eStats_category_replicon_count
eStats_category_scaffold_count
eStats_category_component_count	How many components.
eStats_category_component_span_count	How many placements of components.
eStats_category_total_length
eStats_category_ungapped_length
eStats_category_min_gapped_scaf_length
eStats_category_max_gapped_scaf_length
eStats_category_min_ungapped_scaf_length
eStats_category_max_ungapped_scaf_length
eStats_category_active_finishing_bases
eStats_category_draft_bases
eStats_category_finished_bases
eStats_category_whole_genome_finishing_bases
eStats_category_other_sequences
eStats_category_pre_draft
eStats_category_wgs_bases
eStats_category_bases_in_spanned_gaps
eStats_category_n50
eStats_category_spanned_gaps
eStats_category_unspanned_gaps
eStats_category_bases_in_unspanned_gaps
eStats_category_count_contig	contig count
eStats_category_contig_n50	contig N50
eStats_category_contig_L50	contig L50
eStats_category_contig_n75	contig N75
eStats_category_contig_n90	contig N90
eStats_category_scaf_L50	scaffold L50
eStats_category_scaf_n75	scaffold N75
eStats_category_scaf_n90	scaffold N90
eStats_category_gc_count	base counts for G,C
eStats_category_atgc_count	base count for A,T,G,C
eStats_category_gc_perc	gc-count / atgc-count as percentage.
eStats_category_is_there_unplaced_scaf	1 means there is unplaced scaffold. 0 means none
eStats_category_count_singleton_unordered_scaffold
eStats_category_count_chr_made_of_singleton_ordered_scaffold
eStats_category_count_chr_with_single_component	GCOL-675 - assembly release review stats. Meaningful only at assembly level. Do any of the chromosomes have a single component each? if yes, do all chromosomes have single component each? INTEGER OPTIONAL, number of unplaced/unlocalized singleton scaffolds in minus orientation.
eStats_category_count_singleton_in_minus_orientation	INTEGER OPTIONAL, chr-terminal-gap-types SET OF GC-ChrGapTypes OPTIONAL, are any gaps flagged as 'unknown' and how many? 0 means none.
eStats_category_count_unknown_gaps	INTEGER OPTIONAL, 1.2c Scaffold source names: count implicit/explicit.
eStats_category_count_implicit_scaf_src_name	INTEGER OPTIONAL,.
eStats_category_count_explicit_scaf_src_name	INTEGER OPTIONAL.
eStats_category_all_chr_has_single_component	if 1 yes, 0 no. BOOLEAN OPTIONAL, Do any scaffolds have terminal gaps? How many?
eStats_category_count_scaf_with_terminal_gaps	INTEGER OPTIONAL, Do any chromosome have terminal gaps? what is the gap type for each?
eStats_category_count_chr_with_terminal_gaps	INTEGER OPTIONAL, Number of component GIs (uniq components). Is the count different from the count in the latest GenBank/Refseq release for the same assembly, by how many?
eStats_category_count_uniq_components	INTEGER OPTIONAL ,.
eStats_category_count_uniq_component_diff_from_last_release	INTEGER OPTIONAL,.
eStats_category_count_chromosome_types	INTEGER OPTIONAL,.
eStats_category_count_chromosome_terminal_gap_types	# of chromosome terminal gap types
eStats_category_count_dropped_components	dropped component due to foreign screen
eStats_category_count_non_chromosome_replicon	number of non-Chromosome replicons
eStats_category_count_assembly_units	# of assembly-units
eStats_category_count_alt_loci_units	# of alt-loci units
eStats_category_count_fixed_patches	# of fixed patches
eStats_category_count_novel_patches	# of novel patches
eStats_category_count_regions	# of regions
eStats_category_count_patches	# of patches
eStats_category_count_par_regions	# of PAR regions
eStats_category_count_genomic_regions	# of genomic regions
eStats_category_count_chromosome_replicons	# of chromosomal replicons
eStats_category_assembly_status	Assembly status 1 - Contig only;2 - Unplaced scaffolds only; 3 - Some chromosomes assembled; 4 - all chromosomes assembled; 5 - complete sequence genome; 6-unlocalized and unplaced scaffolds.
eStats_category_net_count_scaffold	number of scaffolds that are not also chromosomes (22 - 75)
eStats_category_net_count_component	number of components that are not also chromosomes or scaffolds (30 - 75 -73)
eStats_category_count_regions_contain_alt_loci	number of regions containing alt-loci
eStats_category_count_regions_contain_fix_patch	number of regions containing fix patch
eStats_category_count_regions_contain_novel_patch	number of regions containing novel patch
eStats_category_count_fix_patch_with_alignment	number of fix patch with alignment to primary assembly
eStats_category_count_novel_patch_with_alignment	number of novel patch with alignment to primary assembly
eStats_category_count_alt_scaf_with_alignment	number of alt scaffolds with alignment to primary assembly
eStats_category_count_alt_loci_scaf	number of alt-loci scaffolds.
eStats_category_count_real_scaffolds	number of scaffolds with gb_is_skipped = 0.
eStats_category_top_level_count	Number of chromosomes or plasmids, unplaced/unlocalized scaffolds, alt-loci scaffolds, and patch scaffolds.
eStats_category_total_gap_length	Total length of gaps.
eStats_category_count_replicons_without_ordered_scaf	count of replicons without ordered scaffold
eStats_category_other	catch all

Definition at line 81 of file GC_Scaf_stats_.hpp.

Function Documentation

C_Sequence() [1/2]

CGC_Replicon_Base::C_Sequence::C_Sequence ( const C_Sequence &  )

private

C_Sequence() [2/2]

END_CHOICE_INFO CGC_Replicon_Base::C_Sequence::C_Sequence

(

void

)

Definition at line 140 of file GC_Replicon_.cpp.

CanGetAligned_scaf()

bool CGC_SequenceStats_Base::CanGetAligned_scaf ( void  ) const

inline

Check if it is safe to call GetAligned_scaf method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 438 of file GC_SequenceStats_.hpp.

CanGetAll_scaf()

bool CGC_SequenceStats_Base::CanGetAll_scaf ( void  ) const

inline

Check if it is safe to call GetAll_scaf method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 338 of file GC_SequenceStats_.hpp.

Referenced by CGC_Sequence::x_GetLength().

CanGetAnnot() [1/2]

bool CGC_AssemblyDesc_Base::CanGetAnnot ( void  ) const

inline

Check if it is safe to call GetAnnot method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1352 of file GC_AssemblyDesc_.hpp.

CanGetAnnot() [2/2]

bool CGC_Sequence_Base::CanGetAnnot ( void  ) const

inline

Check if it is safe to call GetAnnot method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 598 of file GC_Sequence_.hpp.

CanGetAssemblies()

bool CGC_Assemblies_Base::CanGetAssemblies ( void  ) const

inline

Check if it is safe to call GetAssemblies method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 222 of file GC_Assemblies_.hpp.

CanGetChr_names()

bool CGC_Genome_Base::CanGetChr_names ( void  ) const

inline

Check if it is safe to call GetChr_names method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 390 of file GC_Genome_.hpp.

CanGetClass() [1/2]

bool CGC_AssemblySet_Base::CanGetClass ( void  ) const

inline

Check if it is safe to call GetClass method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 511 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::IsSetClass().

Referenced by CGC_AssemblySet_Base::GetClass().

CanGetClass() [2/2]

bool CGC_AssemblyUnit_Base::CanGetClass ( void  ) const

inline

Check if it is safe to call GetClass method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 477 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::IsSetClass().

Referenced by CGC_AssemblyUnit_Base::GetClass().

CanGetCoverage()

bool CGC_AssemblyDesc_Base::CanGetCoverage ( void  ) const

inline

Check if it is safe to call GetCoverage method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1491 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetCoverage().

Referenced by CGC_AssemblyDesc_Base::GetCoverage().

CanGetDesc() [1/2]

bool CGC_AssemblySet_Base::CanGetDesc ( void  ) const

inline

Check if it is safe to call GetDesc method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 558 of file GC_AssemblySet_.hpp.

CanGetDesc() [2/2]

bool CGC_AssemblyUnit_Base::CanGetDesc ( void  ) const

inline

Check if it is safe to call GetDesc method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 524 of file GC_AssemblyUnit_.hpp.

CanGetDescr() [1/3]

bool CGC_AssemblyDesc_Base::CanGetDescr ( void  ) const

inline

Check if it is safe to call GetDescr method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1423 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetDescr().

Referenced by CGC_AssemblyDesc_Base::GetDescr(), and RemoveVersions().

CanGetDescr() [2/3]

bool CGC_Genome_Base::CanGetDescr ( void  ) const

inline

Check if it is safe to call GetDescr method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 369 of file GC_Genome_.hpp.

References CGC_Genome_Base::IsSetDescr().

Referenced by CGC_Genome_Base::GetDescr().

CanGetDescr() [3/3]

bool CGC_Sequence_Base::CanGetDescr ( void  ) const

inline

Check if it is safe to call GetDescr method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 577 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::IsSetDescr().

Referenced by CGC_Sequence_Base::GetDescr().

CanGetDisplay_name()

bool CGC_AssemblyDesc_Base::CanGetDisplay_name ( void  ) const

inline

Check if it is safe to call GetDisplay_name method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1023 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetDisplay_name().

Referenced by CGC_AssemblyDesc_Base::GetDisplay_name().

CanGetExternal()

bool CGC_External_Seqid_Base::CanGetExternal ( void  ) const

inline

Check if it is safe to call GetExternal method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 209 of file GC_External_Seqid_.hpp.

References CGC_External_Seqid_Base::IsSetExternal().

Referenced by CGC_External_Seqid_Base::GetExternal().

CanGetFilesafe_name()

bool CGC_AssemblyDesc_Base::CanGetFilesafe_name ( void  ) const

inline

Check if it is safe to call GetFilesafe_name method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1117 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetFilesafe_name().

Referenced by CGC_AssemblyDesc_Base::GetFilesafe_name().

CanGetGenbank()

bool CGC_DbTagAlias_Base::CanGetGenbank ( void  ) const

inline

Check if it is safe to call GetGenbank method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 281 of file GC_DbTagAlias_.hpp.

References CGC_DbTagAlias_Base::IsSetGenbank().

Referenced by CGC_DbTagAlias_Base::GetGenbank().

CanGetGi()

bool CGC_SeqIdAlias_Base::CanGetGi ( void  ) const

inline

Check if it is safe to call GetGi method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 357 of file GC_SeqIdAlias_.hpp.

References CGC_SeqIdAlias_Base::IsSetGi().

Referenced by CGC_SeqIdAlias_Base::GetGi().

CanGetGpipe()

bool CGC_SeqIdAlias_Base::CanGetGpipe ( void  ) const

inline

Check if it is safe to call GetGpipe method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 336 of file GC_SeqIdAlias_.hpp.

References CGC_SeqIdAlias_Base::IsSetGpipe().

Referenced by CGC_SeqIdAlias_Base::GetGpipe().

CanGetId() [1/4]

bool CGC_AssemblySet_Base::CanGetId ( void  ) const

inline

Check if it is safe to call GetId method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 439 of file GC_AssemblySet_.hpp.

CanGetId() [2/4]

bool CGC_AssemblyUnit_Base::CanGetId ( void  ) const

inline

Check if it is safe to call GetId method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 452 of file GC_AssemblyUnit_.hpp.

CanGetId() [3/4]

bool CGC_External_Seqid_Base::CanGetId ( void  ) const

inline

Check if it is safe to call GetId method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 256 of file GC_External_Seqid_.hpp.

CanGetId() [4/4]

bool CGC_Genome_Base::CanGetId ( void  ) const

inline

Check if it is safe to call GetId method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 319 of file GC_Genome_.hpp.

CanGetLocal_name()

bool CGC_Replicon_Base::CanGetLocal_name ( void  ) const

inline

Check if it is safe to call GetLocal_name method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 506 of file GC_Replicon_.hpp.

References CGC_Replicon_Base::IsSetLocal_name().

Referenced by CGC_Replicon_Base::GetLocal_name().

CanGetLong_name()

bool CGC_AssemblyDesc_Base::CanGetLong_name ( void  ) const

inline

Check if it is safe to call GetLong_name method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1070 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetLong_name().

Referenced by CGC_AssemblyDesc_Base::GetLong_name().

CanGetMols()

bool CGC_AssemblyUnit_Base::CanGetMols ( void  ) const

inline

Check if it is safe to call GetMols method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 554 of file GC_AssemblyUnit_.hpp.

Referenced by CGencollIdMapper::x_FindParentSequence().

CanGetMore_assemblies()

bool CGC_AssemblySet_Base::CanGetMore_assemblies ( void  ) const

inline

Check if it is safe to call GetMore_assemblies method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 618 of file GC_AssemblySet_.hpp.

Referenced by CGencollIdMapper::x_FindParentSequence().

CanGetName() [1/2]

bool CGC_AssemblyDesc_Base::CanGetName ( void  ) const

inline

Check if it is safe to call GetName method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 929 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetName().

Referenced by CGC_AssemblyDesc_Base::GetName().

CanGetName() [2/2]

bool CGC_Replicon_Base::CanGetName ( void  ) const

inline

Check if it is safe to call GetName method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 459 of file GC_Replicon_.hpp.

References CGC_Replicon_Base::IsSetName().

Referenced by CGC_Replicon_Base::GetName().

CanGetOrdered_scaf()

bool CGC_SequenceStats_Base::CanGetOrdered_scaf ( void  ) const

inline

Check if it is safe to call GetOrdered_scaf method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 363 of file GC_SequenceStats_.hpp.

CanGetOther_sequences()

bool CGC_AssemblyUnit_Base::CanGetOther_sequences ( void  ) const

inline

Check if it is safe to call GetOther_sequences method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 579 of file GC_AssemblyUnit_.hpp.

CanGetParam()

bool CGC_Query_Base::CanGetParam ( void  ) const

inline

Check if it is safe to call GetParam method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 210 of file GC_Query_.hpp.

References CGC_Query_Base::IsSetParam().

Referenced by CGC_Query_Base::GetParam().

CanGetPartial()

bool CGC_AssemblyDesc_Base::CanGetPartial ( void  ) const

inline

Check if it is safe to call GetPartial method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1444 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetPartial().

Referenced by CGC_AssemblyDesc_Base::GetPartial().

CanGetParts()

bool CGC_Genome_Base::CanGetParts ( void  ) const

inline

Check if it is safe to call GetParts method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 415 of file GC_Genome_.hpp.

CanGetPatch_type()

bool CGC_Sequence_Base::CanGetPatch_type ( void  ) const

inline

Check if it is safe to call GetPatch_type method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 690 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::IsSetPatch_type().

Referenced by CGC_Sequence_Base::GetPatch_type().

CanGetPrimary_assembly()

bool CGC_AssemblySet_Base::CanGetPrimary_assembly ( void  ) const

inline

Check if it is safe to call GetPrimary_assembly method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 588 of file GC_AssemblySet_.hpp.

Referenced by CGencollIdMapper::x_FindParentSequence().

CanGetProject_id()

bool CGC_Project_Base::CanGetProject_id ( void  ) const

inline

Check if it is safe to call GetProject_id method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 253 of file GC_Project_.hpp.

References CGC_Project_Base::IsSetProject_id().

Referenced by CGC_Project_Base::GetProject_id().

CanGetProject_role()

bool CGC_Project_Base::CanGetProject_role ( void  ) const

inline

Check if it is safe to call GetProject_role method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 206 of file GC_Project_.hpp.

References CGC_Project_Base::IsSetProject_role().

Referenced by CGC_Project_Base::GetProject_role().

CanGetProjects() [1/2]

bool CGC_AssemblyDesc_Base::CanGetProjects ( void  ) const

inline

Check if it is safe to call GetProjects method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 904 of file GC_AssemblyDesc_.hpp.

CanGetProjects() [2/2]

bool CGC_Genome_Base::CanGetProjects ( void  ) const

inline

Check if it is safe to call GetProjects method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 344 of file GC_Genome_.hpp.

CanGetPublic()

bool CGC_SeqIdAlias_Base::CanGetPublic ( void  ) const

inline

Check if it is safe to call GetPublic method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 306 of file GC_SeqIdAlias_.hpp.

CanGetQuery()

bool CGC_Assemblies_Base::CanGetQuery ( void  ) const

inline

Check if it is safe to call GetQuery method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 197 of file GC_Assemblies_.hpp.

CanGetRefseq()

bool CGC_DbTagAlias_Base::CanGetRefseq ( void  ) const

inline

Check if it is safe to call GetRefseq method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 260 of file GC_DbTagAlias_.hpp.

References CGC_DbTagAlias_Base::IsSetRefseq().

Referenced by CGC_DbTagAlias_Base::GetRefseq().

CanGetRelease_level()

bool CGC_AssemblyDesc_Base::CanGetRelease_level ( void  ) const

inline

Check if it is safe to call GetRelease_level method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1538 of file GC_AssemblyDesc_.hpp.

CanGetRelease_status()

bool CGC_AssemblyDesc_Base::CanGetRelease_status ( void  ) const

inline

Check if it is safe to call GetRelease_status method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1305 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetRelease_status().

Referenced by CGC_AssemblyDesc_Base::GetRelease_status().

CanGetRelease_type()

bool CGC_AssemblyDesc_Base::CanGetRelease_type ( void  ) const

inline

Check if it is safe to call GetRelease_type method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1258 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetRelease_type().

Referenced by CGC_AssemblyDesc_Base::GetRelease_type().

CanGetRoles()

bool CGC_Sequence_Base::CanGetRoles ( void  ) const

inline

Check if it is safe to call GetRoles method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 737 of file GC_Sequence_.hpp.

Referenced by CTableDataGCAssembly::GetStringValue(), CGC_Sequence::HasRole(), and CGencollIdMapper::x_MakeSpecForSeq().

CanGetSeq_id()

bool CGC_Sequence_Base::CanGetSeq_id ( void  ) const

inline

Check if it is safe to call GetSeq_id method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 522 of file GC_Sequence_.hpp.

Referenced by CGencollIdMapper::x_CanSeqMeetSpec(), and CGencollIdMapper::x_GetIdFromSeqAndSpec().

CanGetSeq_id_synonyms()

bool CGC_Sequence_Base::CanGetSeq_id_synonyms ( void  ) const

inline

Check if it is safe to call GetSeq_id_synonyms method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 552 of file GC_Sequence_.hpp.

Referenced by CGencollIdMapper::x_CanSeqMeetSpec(), CGencollIdMapper::x_GetIdFromSeqAndSpec(), CGencollIdMapper::x_MakeSpecForSeq(), CGencollIdMapper::x_RecursiveSeqFix(), and CGencollIdMapper::x_StripPseudoSeq().

CanGetSeqs()

bool CGC_TaggedSequences_Base::CanGetSeqs ( void  ) const

inline

Check if it is safe to call GetSeqs method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 262 of file GC_TaggedSequences_.hpp.

CanGetSequence()

bool CGC_Replicon_Base::CanGetSequence ( void  ) const

inline

Check if it is safe to call GetSequence method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 553 of file GC_Replicon_.hpp.

CanGetSequences()

bool CGC_Sequence_Base::CanGetSequences ( void  ) const

inline

Check if it is safe to call GetSequences method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 623 of file GC_Sequence_.hpp.

Referenced by CGencollIdMapper::x_CanSeqMeetSpec(), CGencollIdMapper::x_IsParentSequence(), and CGencollIdMapper::x_RecursiveSeqFix().

CanGetSet_type()

bool CGC_AssemblySet_Base::CanGetSet_type ( void  ) const

inline

Check if it is safe to call GetSet_type method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 464 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::IsSetSet_type().

Referenced by CGC_AssemblySet_Base::GetSet_type().

CanGetSimilarity() [1/2]

bool CGC_DbTagAlias_Base::CanGetSimilarity ( void  ) const

inline

Check if it is safe to call GetSimilarity method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 302 of file GC_DbTagAlias_.hpp.

References CGC_DbTagAlias_Base::IsSetSimilarity().

Referenced by CGC_DbTagAlias_Base::GetSimilarity().

CanGetSimilarity() [2/2]

bool CGC_SeqIdAlias_Base::CanGetSimilarity ( void  ) const

inline

Check if it is safe to call GetSimilarity method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 378 of file GC_SeqIdAlias_.hpp.

References CGC_SeqIdAlias_Base::IsSetSimilarity().

Referenced by CGC_SeqIdAlias_Base::GetSimilarity().

CanGetState()

bool CGC_TaggedSequences_Base::CanGetState ( void  ) const

inline

Check if it is safe to call GetState method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 215 of file GC_TaggedSequences_.hpp.

References CGC_TaggedSequences_Base::IsSetState().

Referenced by CGC_TaggedSequences_Base::GetState().

CanGetStats() [1/3]

bool CGC_AssemblySet_Base::CanGetStats ( void  ) const

inline

Check if it is safe to call GetStats method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 643 of file GC_AssemblySet_.hpp.

References CGC_AssemblySet_Base::IsSetStats().

Referenced by CGC_AssemblySet_Base::GetStats().

CanGetStats() [2/3]

bool CGC_AssemblyUnit_Base::CanGetStats ( void  ) const

inline

Check if it is safe to call GetStats method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 604 of file GC_AssemblyUnit_.hpp.

References CGC_AssemblyUnit_Base::IsSetStats().

Referenced by CGC_AssemblyUnit_Base::GetStats().

CanGetStats() [3/3]

bool CGC_Sequence_Base::CanGetStats ( void  ) const

inline

Check if it is safe to call GetStats method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 669 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::IsSetStats().

Referenced by CGC_Sequence_Base::GetStats(), and CGC_Sequence::x_GetLength().

CanGetStats_category()

bool CGC_Scaf_stats_Base::CanGetStats_category ( void  ) const

inline

Check if it is safe to call GetStats_category method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 281 of file GC_Scaf_stats_.hpp.

References CGC_Scaf_stats_Base::IsSetStats_category().

Referenced by CGC_Scaf_stats_Base::GetStats_category().

CanGetStructure()

bool CGC_Sequence_Base::CanGetStructure ( void  ) const

inline

Check if it is safe to call GetStructure method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 648 of file GC_Sequence_.hpp.

References CGC_Sequence_Base::IsSetStructure().

Referenced by CGC_Sequence_Base::GetStructure(), and CGencollIdMapper::x_RecursiveSeqFix().

CanGetSubmitter_date()

bool CGC_AssemblyDesc_Base::CanGetSubmitter_date ( void  ) const

inline

Check if it is safe to call GetSubmitter_date method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1402 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetSubmitter_date().

Referenced by CGC_AssemblyDesc_Base::GetSubmitter_date().

CanGetSubmitter_name()

bool CGC_AssemblyDesc_Base::CanGetSubmitter_name ( void  ) const

inline

Check if it is safe to call GetSubmitter_name method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 976 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetSubmitter_name().

Referenced by CGC_AssemblyDesc_Base::GetSubmitter_name().

CanGetSubmitter_organization()

bool CGC_AssemblyDesc_Base::CanGetSubmitter_organization ( void  ) const

inline

Check if it is safe to call GetSubmitter_organization method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1588 of file GC_AssemblyDesc_.hpp.

References CGC_AssemblyDesc_Base::IsSetSubmitter_organization().

Referenced by CGC_AssemblyDesc_Base::GetSubmitter_organization().

CanGetSynonyms()

bool CGC_AssemblyDesc_Base::CanGetSynonyms ( void  ) const