Collaboration diagram for Code generated by DATATOOL from 'seqfeat.asn' (module 'NCBI-Protein'):

Classes
class	CProt_ref_Base
	* Prot-ref ********************************************* * * Reference to a protein name * More...

Typedefs
typedef CSerialObject	CProt_ref_Base::Tparent

typedef list< string >	CProt_ref_Base::TName

typedef string	CProt_ref_Base::TDesc

typedef list< string >	CProt_ref_Base::TEc

typedef list< string >	CProt_ref_Base::TActivity

typedef vector< CRef< CDbtag > >	CProt_ref_Base::TDb

typedef EProcessed	CProt_ref_Base::TProcessed

typedef Tparent::CMemberIndex< E_memberIndex, 7 >	CProt_ref_Base::TmemberIndex

Enumerations
enum	CProt_ref_Base::EProcessed { CProt_ref_Base::eProcessed_not_set = 0 , CProt_ref_Base::eProcessed_preprotein = 1 , CProt_ref_Base::eProcessed_mature = 2 , CProt_ref_Base::eProcessed_signal_peptide = 3 , CProt_ref_Base::eProcessed_transit_peptide = 4 , CProt_ref_Base::eProcessed_propeptide = 5 }
	processing status More...

enum class	CProt_ref_Base::E_memberIndex { CProt_ref_Base::e__allMandatory = 0 , CProt_ref_Base::e_name , CProt_ref_Base::e_desc , CProt_ref_Base::e_ec , CProt_ref_Base::e_activity , CProt_ref_Base::e_db , CProt_ref_Base::e_processed }

Functions
	CProt_ref_Base::CProt_ref_Base (void)

virtual	CProt_ref_Base::~CProt_ref_Base (void)

	CProt_ref_Base::DECLARE_INTERNAL_TYPE_INFO ()

static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CProt_ref_Base::EProcessed (void)
	Access to EProcessed's attributes (values, names) as defined in spec. More...

bool	CProt_ref_Base::IsSetName (void) const
	protein name Check if a value has been assigned to Name data member. More...

bool	CProt_ref_Base::CanGetName (void) const
	Check if it is safe to call GetName method. More...

void	CProt_ref_Base::ResetName (void)
	Reset Name data member. More...

const TName &	CProt_ref_Base::GetName (void) const
	Get the Name member data. More...

TName &	CProt_ref_Base::SetName (void)
	Assign a value to Name data member. More...

bool	CProt_ref_Base::IsSetDesc (void) const
	description (instead of name) Check if a value has been assigned to Desc data member. More...

bool	CProt_ref_Base::CanGetDesc (void) const
	Check if it is safe to call GetDesc method. More...

void	CProt_ref_Base::ResetDesc (void)
	Reset Desc data member. More...

const TDesc &	CProt_ref_Base::GetDesc (void) const
	Get the Desc member data. More...

void	CProt_ref_Base::SetDesc (const TDesc &value)
	Assign a value to Desc data member. More...

void	CProt_ref_Base::SetDesc (TDesc &&value)

TDesc &	CProt_ref_Base::SetDesc (void)
	Assign a value to Desc data member. More...

bool	CProt_ref_Base::IsSetEc (void) const
	E.C. More...

bool	CProt_ref_Base::CanGetEc (void) const
	Check if it is safe to call GetEc method. More...

void	CProt_ref_Base::ResetEc (void)
	Reset Ec data member. More...

const TEc &	CProt_ref_Base::GetEc (void) const
	Get the Ec member data. More...

TEc &	CProt_ref_Base::SetEc (void)
	Assign a value to Ec data member. More...

bool	CProt_ref_Base::IsSetActivity (void) const
	activities Check if a value has been assigned to Activity data member. More...

bool	CProt_ref_Base::CanGetActivity (void) const
	Check if it is safe to call GetActivity method. More...

void	CProt_ref_Base::ResetActivity (void)
	Reset Activity data member. More...

const TActivity &	CProt_ref_Base::GetActivity (void) const
	Get the Activity member data. More...

TActivity &	CProt_ref_Base::SetActivity (void)
	Assign a value to Activity data member. More...

bool	CProt_ref_Base::IsSetDb (void) const
	ids in other dbases Check if a value has been assigned to Db data member. More...

bool	CProt_ref_Base::CanGetDb (void) const
	Check if it is safe to call GetDb method. More...

void	CProt_ref_Base::ResetDb (void)
	Reset Db data member. More...

const TDb &	CProt_ref_Base::GetDb (void) const
	Get the Db member data. More...

TDb &	CProt_ref_Base::SetDb (void)
	Assign a value to Db data member. More...

bool	CProt_ref_Base::IsSetProcessed (void) const
	Check if a value has been assigned to Processed data member. More...

bool	CProt_ref_Base::CanGetProcessed (void) const
	Check if it is safe to call GetProcessed method. More...

void	CProt_ref_Base::ResetProcessed (void)
	Reset Processed data member. More...

void	CProt_ref_Base::SetDefaultProcessed (void)
	Assign default value to Processed data member. More...

TProcessed	CProt_ref_Base::GetProcessed (void) const
	Get the Processed member data. More...

void	CProt_ref_Base::SetProcessed (TProcessed value)
	Assign a value to Processed data member. More...

TProcessed &	CProt_ref_Base::SetProcessed (void)
	Assign a value to Processed data member. More...

virtual void	CProt_ref_Base::Reset (void)
	Reset the whole object. More...

	CProt_ref_Base::CProt_ref_Base (const CProt_ref_Base &)

CProt_ref_Base &	CProt_ref_Base::operator= (const CProt_ref_Base &)

Variables
Uint4	CProt_ref_Base::m_set_State [1]

list< string >	CProt_ref_Base::m_Name

string	CProt_ref_Base::m_Desc

list< string >	CProt_ref_Base::m_Ec

list< string >	CProt_ref_Base::m_Activity

vector< CRef< CDbtag > >	CProt_ref_Base::m_Db

EProcessed	CProt_ref_Base::m_Processed

Detailed Description

Typedef Documentation

◆ TActivity

typedef list< string > CProt_ref_Base::TActivity

Definition at line 111 of file Prot_ref_.hpp.

◆ TDb

typedef vector< CRef< CDbtag > > CProt_ref_Base::TDb

Definition at line 112 of file Prot_ref_.hpp.

◆ TDesc

typedef string CProt_ref_Base::TDesc

Definition at line 109 of file Prot_ref_.hpp.

◆ TEc

typedef list< string > CProt_ref_Base::TEc

Definition at line 110 of file Prot_ref_.hpp.

◆ TmemberIndex

typedef Tparent::CMemberIndex<E_memberIndex, 7> CProt_ref_Base::TmemberIndex

Definition at line 125 of file Prot_ref_.hpp.

◆ TName

typedef list< string > CProt_ref_Base::TName

Definition at line 108 of file Prot_ref_.hpp.

◆ Tparent

typedef CSerialObject CProt_ref_Base::Tparent

private

Definition at line 84 of file Prot_ref_.hpp.

◆ TProcessed

typedef EProcessed CProt_ref_Base::TProcessed

Definition at line 113 of file Prot_ref_.hpp.

Enumeration Type Documentation

◆ E_memberIndex

enum CProt_ref_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_name
e_desc
e_ec
e_activity
e_db
e_processed

Definition at line 116 of file Prot_ref_.hpp.

◆ EProcessed

enum CProt_ref_Base::EProcessed

processing status

Enumerator
eProcessed_not_set
eProcessed_preprotein
eProcessed_mature
eProcessed_signal_peptide
eProcessed_transit_peptide
eProcessed_propeptide

Definition at line 95 of file Prot_ref_.hpp.

Function Documentation

◆ CanGetActivity()

bool CProt_ref_Base::CanGetActivity ( void ) const

inline

Check if it is safe to call GetActivity method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 469 of file Prot_ref_.hpp.

◆ CanGetDb()

bool CProt_ref_Base::CanGetDb ( void ) const

inline

Check if it is safe to call GetDb method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 494 of file Prot_ref_.hpp.

◆ CanGetDesc()

bool CProt_ref_Base::CanGetDesc ( void ) const

inline

Check if it is safe to call GetDesc method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 397 of file Prot_ref_.hpp.

References CProt_ref_Base::IsSetDesc().

Referenced by CProt_ref_Base::GetDesc().

◆ CanGetEc()

bool CProt_ref_Base::CanGetEc ( void ) const

inline

Check if it is safe to call GetEc method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 444 of file Prot_ref_.hpp.

◆ CanGetName()

bool CProt_ref_Base::CanGetName ( void ) const

inline

Check if it is safe to call GetName method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 372 of file Prot_ref_.hpp.

Referenced by GetProduct().

◆ CanGetProcessed()

bool CProt_ref_Base::CanGetProcessed ( void ) const

inline

Check if it is safe to call GetProcessed method.

Returns

true, if the data member is getatable.
false, otherwise.

Definition at line 519 of file Prot_ref_.hpp.

◆ CProt_ref_Base() [1/2]

CProt_ref_Base::CProt_ref_Base ( const CProt_ref_Base & )

private

◆ CProt_ref_Base() [2/2]

END_CLASS_INFO CProt_ref_Base::CProt_ref_Base ( void )

Definition at line 120 of file Prot_ref_.cpp.

References CProt_ref_Base::m_set_State.

◆ DECLARE_INTERNAL_TYPE_INFO()

CProt_ref_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ EProcessed()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CProt_ref_Base::EProcessed ( void )

static

Access to EProcessed's attributes (values, names) as defined in spec.

◆ GetActivity()

const CProt_ref_Base::TActivity & CProt_ref_Base::GetActivity ( void ) const

inline

Get the Activity member data.

Returns: Reference to the member data.

Definition at line 475 of file Prot_ref_.hpp.

References CProt_ref_Base::m_Activity.

Referenced by CProtRefColumn::GetFromFeat(), s_AppendProtRefInfo(), CFeatureItem::x_AddFTableProtQuals(), CFeatureItem::x_AddQualProtActivity(), and CFeatureItem::x_AddQualsProt().

◆ GetDb()

const CProt_ref_Base::TDb & CProt_ref_Base::GetDb ( void ) const

inline

Get the Db member data.

Returns: Reference to the member data.

Definition at line 500 of file Prot_ref_.hpp.

References CProt_ref_Base::m_Db.

Referenced by CProt_ref::GetLabel(), and s_AppendProtRefInfo().

◆ GetDesc()

const CProt_ref_Base::TDesc & CProt_ref_Base::GetDesc ( void ) const

inline

Get the Desc member data.

Returns: Reference to the member data.

Definition at line 403 of file Prot_ref_.hpp.

References CProt_ref_Base::CanGetDesc(), CProt_ref_Base::m_Desc, and CSerialObject::ThrowUnassigned().

Referenced by CDescriptionColumn::AddToFeature(), CConvertCDSToProt::Convert(), CCdsToMatPeptide::ConvertInner(), CEntrezgene::GetDescription(), CDescriptionColumn::GetFromFeat(), CProt_ref::GetLabel(), CEditingActionFeatDesc::GetValue(), CNewCleanup_imp::PostProtFeatfBC(), CNewCleanup_imp::ProtrefBC(), CNewCleanup_imp::ProtRefEC(), CFindASN1Dlg::ReplaceInFeature(), s_AppendProtRefInfo(), CFeatureItem::x_AddFTableProtQuals(), CGeneFeatFromOtherFeatDlg::x_AddGeneQuals(), CFeatureItem::x_AddQualProtDesc(), CFeatureItem::x_AddQualsProt(), CDeflineGenerator::x_SetTitleFromProtein(), and CDeflineGenerator::x_SetTitleFromProteinIdx().

◆ GetEc()

const CProt_ref_Base::TEc & CProt_ref_Base::GetEc ( void ) const

inline

Get the Ec member data.

Returns: Reference to the member data.

Definition at line 450 of file Prot_ref_.hpp.

References CProt_ref_Base::m_Ec.

Referenced by CCleanup::FixECNumbers(), CProtRefColumn::GetFromFeat(), s_AppendProtRefInfo(), CFeatureItem::x_AddFTableProtQuals(), CFeatureItem::x_AddQualProtEcNumber(), CFeatureItem::x_AddQualsProt(), CValidErrorFormat::x_FormatECNumberForSubmitterReport(), and CProtValidator::x_ValidateECNumbers().

◆ GetName()

const CProt_ref_Base::TName & CProt_ref_Base::GetName ( void ) const

inline

Get the Name member data.

Returns: Reference to the member data.

Definition at line 378 of file Prot_ref_.hpp.

References CProt_ref_Base::m_Name.

Referenced by CProductColumn::AddToFeature(), CProtRefColumn::AddToFeature(), BOOST_AUTO_TEST_CASE(), ConvertProteinToImp(), CTruncateCDS::GetCommand(), CEntrezgene::GetDescription(), CProductColumn::GetFromFeat(), CProtRefColumn::GetFromFeat(), CProt_ref::GetLabel(), GetProduct(), LookForProductName(), s_AppendProtRefInfo(), s_NotPeptideException(), s_TitleFromSegment(), CCleanup::SetProteinName(), CMacroFunction_SwapRelFeatQual::TheFunction(), CMacroFunction_SetRelFeatQual::TheFunction(), CMacroFunction_ConvertFeatQual::TheFunction(), CMacroFunction_ParseFeatQual::TheFunction(), CMacroFunction_CopyFeatQual::TheFunction(), CMacroFunction_RemoveOutside::TheFunction(), CMacroFunction_RmvOutsideRelFeatQual::TheFunction(), CMacroFunction_ReplaceStopWithSelenocysteine::TheFunction(), UpdatemRNAProduct(), CValidError_bioseq::ValidateRawConst(), CFeatureItem::x_AddFTableProtQuals(), CGeneFeatFromOtherFeatDlg::x_AddGeneQuals(), CFastaOstreamEx::x_AddProteinNameAttribute(), CFeatureItem::x_AddQualCdsProduct(), CFeatureItem::x_AddQualsProt(), CCmdFeatIdXrefsFromQualifiers::x_CreateActionCmd(), CValidErrorFormat::x_FormatECNumberForSubmitterReport(), CAutoDefFeatureClause::x_GetProductName(), CProtValidator::x_ReportUninformativeNames(), CEditObjectSeq_feat::x_UpdatemRNA(), CGff2Writer::xAssignFeatureAttributeProduct(), CFeatTableEdit::xGenerate_mRNA_Product(), CFeatureTableReader::xTranslateProtein(), and CGff3Writer::xWriteProteinFeature().

◆ GetProcessed()

CProt_ref_Base::TProcessed CProt_ref_Base::GetProcessed ( void ) const

inline

Get the Processed member data.

Returns: Copy of the member data.

Definition at line 538 of file Prot_ref_.hpp.

References CProt_ref_Base::m_Processed.

Referenced by BOOST_AUTO_TEST_CASE(), ConvertProteinToImp(), CValidErrorFormat::GetFeatureContentLabel(), GetProteinWeight(), CCleanup::MoveFeatToProtein(), CNewCleanup_imp::ResynchPeptidePartials(), s_AppendProtRefInfo(), s_FindKeyFromFeatDefType(), s_GetBestProtFeature(), s_IsPreprotein(), CValidError_bioseq::ValidateSeqFeatContext(), CValidError_feat::ValidateSeqFeatContext(), CFeatureTableReader_Imp::x_AddQualifierToFeature(), CFeatureItem::x_AddQualProtNote(), CFeatureItem::x_AddQualsProt(), CDeflineGenerator::x_GetLongestProtein(), and CBioseqIndex::x_InitFeats().

◆ IsSetActivity()

bool CProt_ref_Base::IsSetActivity ( void ) const

inline

activities Check if a value has been assigned to Activity data member.

Data member Activity is optional; its type is defined as 'typedef list< string > TActivity'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 463 of file Prot_ref_.hpp.

References CProt_ref_Base::m_set_State.

Referenced by CProtRefColumn::AddToFeature(), CProtRefColumn::GetFromFeat(), CFindASN1Dlg::ReplaceInFeature(), s_AppendProtRefInfo(), CFeatureItem::x_AddQualsProt(), and CAutogeneratedCleanup::x_BasicCleanupProtRef().

◆ IsSetDb()

bool CProt_ref_Base::IsSetDb ( void ) const

inline

ids in other dbases Check if a value has been assigned to Db data member.

Data member Db is optional; its type is defined as 'typedef vector< CRef< CDbtag > > TDb'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 488 of file Prot_ref_.hpp.

References CProt_ref_Base::m_set_State.

Referenced by CProt_ref::GetLabel(), CNewCleanup_imp::ProtFeatfBC(), CFindASN1Dlg::ReplaceInFeature(), and s_AppendProtRefInfo().

◆ IsSetDesc()

bool CProt_ref_Base::IsSetDesc ( void ) const

inline

description (instead of name) Check if a value has been assigned to Desc data member.

Data member Desc is optional; its type is defined as 'typedef string TDesc'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 391 of file Prot_ref_.hpp.

References CProt_ref_Base::m_set_State.

Referenced by CDescriptionColumn::AddToFeature(), CProt_ref_Base::CanGetDesc(), CConvertCDSToProt::Convert(), CCdsToMatPeptide::ConvertInner(), CDescriptionColumn::GetFromFeat(), CProt_ref::GetLabel(), CEditingActionFeatDesc::GetValue(), CEditingActionFeatDesc::IsSetValue(), CNewCleanup_imp::PostProtFeatfBC(), CNewCleanup_imp::ProtrefBC(), CNewCleanup_imp::ProtRefEC(), CFindASN1Dlg::ReplaceInFeature(), s_AppendProtRefInfo(), CProt_ref_Base::SetDesc(), CFeatureItem::x_AddFTableProtQuals(), CGeneFeatFromOtherFeatDlg::x_AddGeneQuals(), CFeatureItem::x_AddQualProtDesc(), CFeatureItem::x_AddQualsProt(), CAutogeneratedCleanup::x_BasicCleanupProtRef(), CDeflineGenerator::x_SetTitleFromProtein(), and CDeflineGenerator::x_SetTitleFromProteinIdx().

◆ IsSetEc()

bool CProt_ref_Base::IsSetEc ( void ) const

inline

E.C.

number(s) Check if a value has been assigned to Ec data member.

Data member Ec is optional; its type is defined as 'typedef list< string > TEc'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 438 of file Prot_ref_.hpp.

References CProt_ref_Base::m_set_State.

Referenced by CProtRefColumn::AddToFeature(), CProt_ref::AutoFixEC(), CProtRefColumn::GetFromFeat(), CUpdateECNumbers::operator()(), CNewCleanup_imp::ProtRefEC(), CProt_ref::RemoveBadEC(), CFindASN1Dlg::ReplaceInFeature(), s_AppendProtRefInfo(), CFeatureItem::x_AddQualProtEcNumber(), CFeatureItem::x_AddQualsProt(), CAutogeneratedCleanup::x_BasicCleanupProtRef(), CValidErrorFormat::x_FormatECNumberForSubmitterReport(), CProtValidator::x_ValidateECNumbers(), and CCdregionValidator::x_ValidateFeatComment().

◆ IsSetName()

bool CProt_ref_Base::IsSetName ( void ) const

inline

protein name Check if a value has been assigned to Name data member.

Data member Name is optional; its type is defined as 'typedef list< string > TName'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 366 of file Prot_ref_.hpp.

References CProt_ref_Base::m_set_State.

Referenced by CProductColumn::AddToFeature(), CProtRefColumn::AddToFeature(), CFixProductNames::apply(), CProductColumn::ClearInFeature(), ConvertProteinToImp(), CTruncateCDS::GetCommand(), CProductColumn::GetFromFeat(), CProtRefColumn::GetFromFeat(), CProt_ref::GetLabel(), LookForProductName(), CCleanup::MoveFeatToProtein(), CSuspectProductRulesEditor::OnApplyFixes(), CSuspectProductRulesEditor::OnListMatches(), CNewCleanup_imp::ProtrefBC(), CFindASN1Dlg::ReplaceInFeature(), RescueProtProductQual(), s_AppendProtRefInfo(), s_NotPeptideException(), s_SetProtRef(), s_TitleFromSegment(), CCleanup::SetProteinName(), CMacroFunction_ReplaceStopWithSelenocysteine::TheFunction(), UpdatemRNAProduct(), CGeneFeatFromOtherFeatDlg::x_AddGeneQuals(), CFastaOstreamEx::x_AddProteinNameAttribute(), CFeatureItem::x_AddQualsProt(), CAutogeneratedCleanup::x_BasicCleanupProtRef(), CCmdFeatIdXrefsFromQualifiers::x_CreateActionCmd(), CValidErrorFormat::x_FormatECNumberForSubmitterReport(), CAutoDefFeatureClause::x_GetProductName(), CEditObjectSeq_feat::x_UpdatemRNA(), CGff2Writer::xAssignFeatureAttributeProduct(), CFeatTableEdit::xGenerate_mRNA_Product(), CFeatureTableReader::xTranslateProtein(), and CGff3Writer::xWriteProteinFeature().

◆ IsSetProcessed()

bool CProt_ref_Base::IsSetProcessed ( void ) const

inline

Check if a value has been assigned to Processed data member.

Data member Processed is optional with default eProcessed_not_set; its type is defined as 'typedef EProcessed TProcessed'

Returns

true, if a value has been assigned.
false, otherwise.

Definition at line 513 of file Prot_ref_.hpp.

References CProt_ref_Base::m_set_State.

Referenced by BOOST_AUTO_TEST_CASE(), ConvertProteinToImp(), CValidErrorFormat::GetFeatureContentLabel(), CCleanup::MoveFeatToProtein(), CNewCleanup_imp::ResynchPeptidePartials(), s_FindKeyFromFeatDefType(), s_IsPreprotein(), CProt_ref_Base::SetProcessed(), CValidError_bioseq::ValidateSeqFeatContext(), CValidError_feat::ValidateSeqFeatContext(), CFeatureTableReader_Imp::x_AddQualifierToFeature(), CSequenceUpdater::x_AdjustProteinFeature(), CDeflineGenerator::x_GetLongestProtein(), and CBioseqIndex::x_InitFeats().

◆ operator=()

CProt_ref_Base& CProt_ref_Base::operator= ( const CProt_ref_Base & )

private

◆ Reset()

void CProt_ref_Base::Reset ( void )

virtual

Reset the whole object.

Definition at line 94 of file Prot_ref_.cpp.

References CProt_ref_Base::ResetActivity(), CProt_ref_Base::ResetDb(), CProt_ref_Base::ResetDesc(), CProt_ref_Base::ResetEc(), CProt_ref_Base::ResetName(), and CProt_ref_Base::ResetProcessed().

◆ ResetActivity()

void CProt_ref_Base::ResetActivity ( void )

Reset Activity data member.

Definition at line 82 of file Prot_ref_.cpp.

References CProt_ref_Base::m_Activity, and CProt_ref_Base::m_set_State.

Referenced by CProt_ref_Base::Reset().

◆ ResetDb()

void CProt_ref_Base::ResetDb ( void )

Reset Db data member.

Definition at line 88 of file Prot_ref_.cpp.

References CProt_ref_Base::m_Db, and CProt_ref_Base::m_set_State.

Referenced by CNewCleanup_imp::ProtFeatfBC(), and CProt_ref_Base::Reset().

◆ ResetDesc()

void CProt_ref_Base::ResetDesc ( void )

Reset Desc data member.

Definition at line 70 of file Prot_ref_.cpp.

References CProt_ref_Base::m_Desc, and CProt_ref_Base::m_set_State.

Referenced by CNewCleanup_imp::PostProtFeatfBC(), CNewCleanup_imp::ProtrefBC(), and CProt_ref_Base::Reset().

◆ ResetEc()

void CProt_ref_Base::ResetEc ( void )

Reset Ec data member.

Definition at line 76 of file Prot_ref_.cpp.

References CProt_ref_Base::m_Ec, and CProt_ref_Base::m_set_State.

Referenced by CProt_ref::RemoveBadEC(), and CProt_ref_Base::Reset().

◆ ResetName()

END_ENUM_INFO void CProt_ref_Base::ResetName ( void )

Reset Name data member.

Definition at line 64 of file Prot_ref_.cpp.

References CProt_ref_Base::m_Name, and CProt_ref_Base::m_set_State.

Referenced by CProt_ref_Base::Reset().

◆ ResetProcessed()

void CProt_ref_Base::ResetProcessed ( void )

inline

Reset Processed data member.

Definition at line 525 of file Prot_ref_.hpp.

References CProt_ref_Base::eProcessed_not_set, CProt_ref_Base::m_Processed, and CProt_ref_Base::m_set_State.

Referenced by CProt_ref_Base::Reset(), and CProt_ref_Base::SetDefaultProcessed().

◆ SetActivity()

CProt_ref_Base::TActivity & CProt_ref_Base::SetActivity ( void )

inline

Assign a value to Activity data member.

Returns: Reference to the data value.

Definition at line 481 of file Prot_ref_.hpp.

References CProt_ref_Base::m_Activity, and CProt_ref_Base::m_set_State.

Referenced by CkCdRegion(), GetProtRefAnnot(), s_AppendProtRefInfo(), CFeatureTableReader_Imp::x_AddQualifierToCdregion(), and CAutogeneratedCleanup::x_BasicCleanupProtRef().

◆ SetDb()

CProt_ref_Base::TDb & CProt_ref_Base::SetDb ( void )

inline

Assign a value to Db data member.

Returns: Reference to the data value.

Definition at line 506 of file Prot_ref_.hpp.

References CProt_ref_Base::m_Db, and CProt_ref_Base::m_set_State.

Referenced by CNewCleanup_imp::ProtFeatfBC(), and s_AppendProtRefInfo().

◆ SetDefaultProcessed()

void CProt_ref_Base::SetDefaultProcessed ( void )

inline

Assign default value to Processed data member.

Definition at line 532 of file Prot_ref_.hpp.

References CProt_ref_Base::ResetProcessed().

◆ SetDesc() [1/3]

void CProt_ref_Base::SetDesc ( const TDesc & value )

inline

Assign a value to Desc data member.

Parameters

value Value to assign

Definition at line 412 of file Prot_ref_.hpp.

References CProt_ref_Base::m_Desc, CProt_ref_Base::m_set_State, and rapidjson::value.

Referenced by GetProtRefAnnot(), CNewCleanup_imp::ProtrefBC(), CNewCleanup_imp::ProtRefEC(), s_AppendProtRefInfo(), CFeatureTableReader_Imp::x_AddQualifierToCdregion(), and CAutogeneratedCleanup::x_BasicCleanupProtRef().

◆ SetDesc() [2/3]

void CProt_ref_Base::SetDesc ( CProt_ref_Base::TDesc && value )

inline

Definition at line 419 of file Prot_ref_.hpp.

References CProt_ref_Base::m_Desc, CProt_ref_Base::m_set_State, and rapidjson::value.

◆ SetDesc() [3/3]

CProt_ref_Base::TDesc & CProt_ref_Base::SetDesc ( void )

inline

Assign a value to Desc data member.

Returns: Reference to the data value.

Definition at line 426 of file Prot_ref_.hpp.

References CProt_ref_Base::IsSetDesc(), CProt_ref_Base::m_Desc, CProt_ref_Base::m_set_State, and CSerialObject::UnassignedString().

◆ SetEc()

CProt_ref_Base::TEc & CProt_ref_Base::SetEc ( void )

inline

Assign a value to Ec data member.

Returns: Reference to the data value.

Definition at line 456 of file Prot_ref_.hpp.

References CProt_ref_Base::m_Ec, and CProt_ref_Base::m_set_State.

Referenced by CProt_ref::AutoFixEC(), CkCdRegion(), GetProtRefAnnot(), CNewCleanup_imp::ProtRefEC(), CProt_ref::RemoveBadEC(), s_AppendProtRefInfo(), CFeatureTableReader_Imp::x_AddQualifierToCdregion(), and CAutogeneratedCleanup::x_BasicCleanupProtRef().

◆ SetName()

CProt_ref_Base::TName & CProt_ref_Base::SetName ( void )

inline

Assign a value to Name data member.

Returns: Reference to the data value.

Definition at line 384 of file Prot_ref_.hpp.

References CProt_ref_Base::m_Name, and CProt_ref_Base::m_set_State.

Referenced by CkCdRegion(), GetProtRefAnnot(), CNewCleanup_imp::ImpFeatBC(), LookForProductName(), CNewCleanup_imp::ProtrefBC(), s_AppendProtRefInfo(), s_SetProtRef(), CCleanup::SetProteinName(), CFeatureTableReader_Imp::x_AddQualifierToCdregion(), CAutogeneratedCleanup::x_BasicCleanupProtRef(), CFeatTableEdit::xGenerate_mRNA_Product(), and CFeatureTableReader::xTranslateProtein().

◆ SetProcessed() [1/2]

void CProt_ref_Base::SetProcessed ( CProt_ref_Base::TProcessed value )

inline

Assign a value to Processed data member.

Parameters

value Value to assign

Definition at line 544 of file Prot_ref_.hpp.

References CProt_ref_Base::m_Processed, CProt_ref_Base::m_set_State, and rapidjson::value.

Referenced by CNewCleanup_imp::ImpFeatBC(), s_AppendProtRefInfo(), and CFeatureTableReader_Imp::x_SetupSeqFeat().

◆ SetProcessed() [2/2]

CProt_ref_Base::TProcessed & CProt_ref_Base::SetProcessed ( void )

inline

Assign a value to Processed data member.

Returns: Reference to the data value.

Definition at line 551 of file Prot_ref_.hpp.

References CProt_ref_Base::IsSetProcessed(), CProt_ref_Base::m_Processed, CProt_ref_Base::m_set_State, and CSerialObject::UnassignedByte().

◆ ~CProt_ref_Base()

CProt_ref_Base::~CProt_ref_Base ( void )

virtual

Definition at line 127 of file Prot_ref_.cpp.

Variable Documentation

◆ m_Activity

list< string > CProt_ref_Base::m_Activity

private

Definition at line 351 of file Prot_ref_.hpp.

Referenced by CProt_ref_Base::GetActivity(), CProt_ref_Base::ResetActivity(), and CProt_ref_Base::SetActivity().

◆ m_Db

vector< CRef< CDbtag > > CProt_ref_Base::m_Db

private

Definition at line 352 of file Prot_ref_.hpp.

Referenced by CProt_ref_Base::GetDb(), CProt_ref_Base::ResetDb(), and CProt_ref_Base::SetDb().

◆ m_Desc

string CProt_ref_Base::m_Desc

private

Definition at line 349 of file Prot_ref_.hpp.

Referenced by CProt_ref_Base::GetDesc(), CProt_ref_Base::ResetDesc(), and CProt_ref_Base::SetDesc().

◆ m_Ec

list< string > CProt_ref_Base::m_Ec

private

Definition at line 350 of file Prot_ref_.hpp.

Referenced by CProt_ref_Base::GetEc(), CProt_ref_Base::ResetEc(), and CProt_ref_Base::SetEc().

◆ m_Name

list< string > CProt_ref_Base::m_Name

private

Definition at line 348 of file Prot_ref_.hpp.

Referenced by CProt_ref_Base::GetName(), CProt_ref_Base::ResetName(), and CProt_ref_Base::SetName().

◆ m_Processed

EProcessed CProt_ref_Base::m_Processed

private

Definition at line 353 of file Prot_ref_.hpp.

Referenced by CProt_ref_Base::GetProcessed(), CProt_ref_Base::ResetProcessed(), and CProt_ref_Base::SetProcessed().

Classes

Typedefs

Enumerations

Functions

Variables

Detailed Description

Typedef Documentation

◆ TActivity

◆ TDb

◆ TDesc

◆ TEc

◆ TmemberIndex

◆ TName

◆ Tparent

◆ TProcessed

Enumeration Type Documentation

◆ E_memberIndex

◆ EProcessed

Function Documentation

◆ CanGetActivity()

◆ CanGetDb()

◆ CanGetDesc()

◆ CanGetEc()

◆ CanGetName()

◆ CanGetProcessed()

◆ CProt_ref_Base() [1/2]

◆ CProt_ref_Base() [2/2]

◆ DECLARE_INTERNAL_TYPE_INFO()

◆ EProcessed()

◆ GetActivity()

◆ GetDb()

◆ GetDesc()

◆ GetEc()

◆ GetName()

◆ GetProcessed()

◆ IsSetActivity()

◆ IsSetDb()

◆ IsSetDesc()

◆ IsSetEc()

◆ IsSetName()

◆ IsSetProcessed()

◆ operator=()

◆ Reset()

◆ ResetActivity()

◆ ResetDb()

◆ ResetDesc()

◆ ResetEc()

◆ ResetName()

◆ ResetProcessed()

◆ SetActivity()

◆ SetDb()

◆ SetDefaultProcessed()

◆ SetDesc() [1/3]

◆ SetDesc() [2/3]

◆ SetDesc() [3/3]

◆ SetEc()

◆ SetName()

◆ SetProcessed() [1/2]

◆ SetProcessed() [2/2]

◆ ~CProt_ref_Base()

Variable Documentation

◆ m_Activity

◆ m_Db

◆ m_Desc

◆ m_Ec

◆ m_Name

◆ m_Processed

◆ m_set_State