Code generated by DATATOOL from 'seq.asn' (module 'NCBI-Sequence')

Collaboration diagram for Code generated by DATATOOL from 'seq.asn' (module 'NCBI-Sequence'):

Classes
class	CAlign_def
	CAlign_def –. More...
class	CAlign_def_Base
	CAlign_def_Base –. More...
class	CAnnot_descr
	CAnnot_descr –. More...
class	CAnnot_descr_Base
	CAnnot_descr_Base –. More...
class	CAnnot_id
	CAnnot_id –. More...
class	CAnnot_id_Base
	CAnnot_id_Base –. More...
class	CAnnotdesc
	CAnnotdesc –. More...
class	CAnnotdesc_Base
	CAnnotdesc_Base –. More...
class	CBioseq_Base
	*** Sequence ******************************** * More...
class	CDelta_ext_Base
	CDelta_ext_Base –. More...
class	CDelta_seq
	CDelta_seq –. More...
class	CDelta_seq_Base
	CDelta_seq_Base –. More...
class	CHeterogen
	CHeterogen –. More...
class	CHeterogen_Base
	cofactor, prosthetic group, inhibitor, etc More...
class	CIUPACaa
	CIUPACaa –. More...
class	CIUPACaa_Base
	IUPAC 1 letter codes, no spaces. More...
class	CIUPACna
	CIUPACna –. More...
class	CIUPACna_Base
	IUPAC 1 letter codes, no spaces. More...
class	CLinkage_evidence_Base
	CLinkage_evidence_Base –. More...
class	CMap_ext
	CMap_ext –. More...
class	CMap_ext_Base
	CMap_ext_Base –. More...
class	CMolInfo_Base
	******* NOTE: * mol-type, modif, method, and org are consolidated and expanded * in Org-ref, BioSource, and MolInfo in this specification. More...
class	CNCBI2na
	CNCBI2na –. More...
class	CNCBI2na_Base
	00=A, 01=C, 10=G, 11=T More...
class	CNCBI4na
	CNCBI4na –. More...
class	CNCBI4na_Base
	1 bit each for agct 0001=A, 0010=C, 0100=G, 1000=T/U 0101=Purine, 1010=Pyrimidine, etc More...
class	CNCBI8aa
	CNCBI8aa –. More...
class	CNCBI8aa_Base
	for modified amino acids More...
class	CNCBI8na
	CNCBI8na –. More...
class	CNCBI8na_Base
	for modified nucleic acids More...
class	CNCBIeaa
	CNCBIeaa –. More...
class	CNCBIeaa_Base
	ASCII extended 1 letter aa codes IUPAC codes + U=selenocysteine. More...
class	CNCBIpaa
	CNCBIpaa –. More...
class	CNCBIpaa_Base
	25 octets/aa, prob for IUPAC aas in order: A-Y,B,Z,X,(ter),anything probabilities are coded 0-255 = 0.0-1.0 More...
class	CNCBIpna
	CNCBIpna –. More...
class	CNCBIpna_Base
	5 octets/base, prob for a,c,g,t,n probabilities are coded 0-255 = 0.0-1.0 More...
class	CNCBIstdaa
	CNCBIstdaa –. More...
class	CNCBIstdaa_Base
	codes 0-25, 1 per byte More...
class	CNum_cont
	CNum_cont –. More...
class	CNum_cont_Base
	continuous display numbering system More...
class	CNum_enum
	CNum_enum –. More...
class	CNum_enum_Base
	any tags to residues More...
class	CNum_real
	CNum_real –. More...
class	CNum_real_Base
	mapping to floating point system More...
class	CNum_ref
	CNum_ref –. More...
class	CNum_ref_Base
	by reference to other sequences More...
class	CNumbering
	CNumbering –. More...
class	CNumbering_Base
	any display numbering system More...
class	CPubdesc_Base
	how sequence presented in pub More...
class	CRef_ext
	CRef_ext –. More...
class	CRef_ext_Base
	CRef_ext_Base –. More...
class	CSeg_ext
	CSeg_ext –. More...
class	CSeg_ext_Base
	CSeg_ext_Base –. More...
class	CSeq_annot_Base
	features in table form More...
class	CSeq_annot_Base::C_Data
	C_Data –. More...
class	CSeq_data_Base
	*** Various internal sequence representations ************ * all are controlled, fixed length forms sequence representations More...
class	CSeq_descr_Base
	*** Descriptors ***************************** * More...
class	CSeq_ext
	CSeq_ext –. More...
class	CSeq_ext_Base
	*** Sequence Extensions ********************************** * for representing more complex types * const type uses Seq-hist.assembly More...
class	CSeq_gap_Base
	CSeq_gap_Base –. More...
class	CSeq_hist
	CSeq_hist –. More...
class	CSeq_hist_Base
	*** Sequence History Record *********************************** ** assembly = records how seq was assembled from others ** replaces = records sequences made obsolete by this one ** replaced-by = this seq is made obsolete by another(s) More...
class	CSeq_hist_Base::C_Deleted
	C_Deleted –. More...
class	CSeq_hist_rec
	CSeq_hist_rec –. More...
class	CSeq_hist_rec_Base
	CSeq_hist_rec_Base –. More...
class	CSeq_inst_Base
	*** Instances of sequences ******************************* * the sequence data itself More...
class	CSeq_literal_Base
	CSeq_literal_Base –. More...
class	CSeqdesc_Base
	CSeqdesc_Base –. More...
class	CTextannot_id
	CTextannot_id –. More...
class	CTextannot_id_Base
	*** Sequence Annotation ************************************* * This is a replica of Textseq-id This is specific for annotations, and exists to maintain a semantic difference between IDs assigned to annotations and IDs assigned to sequences More...

Typedefs
typedef CAlign_def_Base	CAlign_def::Tparent
typedef CSerialObject	CAlign_def_Base::Tparent
typedef int	CAlign_def_Base::TAlign_type
typedef list< CRef< CSeq_id > >	CAlign_def_Base::TIds
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CAlign_def_Base::TmemberIndex
typedef CAnnot_descr_Base	CAnnot_descr::Tparent
typedef CSerialObject	CAnnot_descr_Base::Tparent
typedef list< CRef< CAnnotdesc > >	CAnnot_descr_Base::Tdata
typedef CAnnot_id_Base	CAnnot_id::Tparent
typedef CSerialObject	CAnnot_id_Base::Tparent
typedef CObject_id	CAnnot_id_Base::TLocal
typedef NCBI_NS_NCBI::TEntrezId	CAnnot_id_Base::TNcbi
typedef CDbtag	CAnnot_id_Base::TGeneral
typedef CTextannot_id	CAnnot_id_Base::TOther
typedef CAnnotdesc_Base	CAnnotdesc::Tparent
typedef CSerialObject	CAnnotdesc_Base::Tparent
typedef string	CAnnotdesc_Base::TName
typedef string	CAnnotdesc_Base::TTitle
typedef string	CAnnotdesc_Base::TComment
typedef CPubdesc	CAnnotdesc_Base::TPub
typedef CUser_object	CAnnotdesc_Base::TUser
typedef CDate	CAnnotdesc_Base::TCreate_date
typedef CDate	CAnnotdesc_Base::TUpdate_date
typedef CSeq_id	CAnnotdesc_Base::TSrc
typedef CAlign_def	CAnnotdesc_Base::TAlign
typedef CSeq_loc	CAnnotdesc_Base::TRegion
typedef CSerialObject	CBioseq_Base::Tparent
typedef list< CRef< CSeq_id > >	CBioseq_Base::TId
typedef CSeq_descr	CBioseq_Base::TDescr
typedef CSeq_inst	CBioseq_Base::TInst
typedef list< CRef< CSeq_annot > >	CBioseq_Base::TAnnot
typedef Tparent::CMemberIndex< E_memberIndex, 5 >	CBioseq_Base::TmemberIndex
typedef CSerialObject	CDelta_ext_Base::Tparent
typedef list< CRef< CDelta_seq > >	CDelta_ext_Base::Tdata
typedef CDelta_seq_Base	CDelta_seq::Tparent
typedef CSerialObject	CDelta_seq_Base::Tparent
typedef CSeq_loc	CDelta_seq_Base::TLoc
typedef CSeq_literal	CDelta_seq_Base::TLiteral
typedef CHeterogen_Base	CHeterogen::Tparent
typedef CStringAliasBase< string >	CHeterogen_Base::Tparent
typedef CIUPACaa_Base	CIUPACaa::Tparent
typedef CStringAliasBase< string >	CIUPACaa_Base::Tparent
typedef CIUPACna_Base	CIUPACna::Tparent
typedef CStringAliasBase< string >	CIUPACna_Base::Tparent
typedef CSerialObject	CLinkage_evidence_Base::Tparent
typedef int	CLinkage_evidence_Base::TType
typedef Tparent::CMemberIndex< E_memberIndex, 2 >	CLinkage_evidence_Base::TmemberIndex
typedef CMap_ext_Base	CMap_ext::Tparent
typedef CSerialObject	CMap_ext_Base::Tparent
typedef list< CRef< CSeq_feat > >	CMap_ext_Base::Tdata
typedef CSerialObject	CMolInfo_Base::Tparent
typedef int	CMolInfo_Base::TBiomol
typedef int	CMolInfo_Base::TTech
typedef string	CMolInfo_Base::TTechexp
typedef int	CMolInfo_Base::TCompleteness
typedef string	CMolInfo_Base::TGbmoltype
typedef Tparent::CMemberIndex< E_memberIndex, 6 >	CMolInfo_Base::TmemberIndex
typedef CNCBI2na_Base	CNCBI2na::Tparent
typedef CStringAliasBase< vector< char > >	CNCBI2na_Base::Tparent
typedef CNCBI4na_Base	CNCBI4na::Tparent
typedef CStringAliasBase< vector< char > >	CNCBI4na_Base::Tparent
typedef CNCBI8aa_Base	CNCBI8aa::Tparent
typedef CStringAliasBase< vector< char > >	CNCBI8aa_Base::Tparent
typedef CNCBI8na_Base	CNCBI8na::Tparent
typedef CStringAliasBase< vector< char > >	CNCBI8na_Base::Tparent
typedef CNCBIeaa_Base	CNCBIeaa::Tparent
typedef CStringAliasBase< string >	CNCBIeaa_Base::Tparent
typedef CNCBIpaa_Base	CNCBIpaa::Tparent
typedef CStringAliasBase< vector< char > >	CNCBIpaa_Base::Tparent
typedef CNCBIpna_Base	CNCBIpna::Tparent
typedef CStringAliasBase< vector< char > >	CNCBIpna_Base::Tparent
typedef CNCBIstdaa_Base	CNCBIstdaa::Tparent
typedef CStringAliasBase< vector< char > >	CNCBIstdaa_Base::Tparent
typedef CNum_cont_Base	CNum_cont::Tparent
typedef CSerialObject	CNum_cont_Base::Tparent
typedef TSignedSeqPos	CNum_cont_Base::TRefnum
typedef bool	CNum_cont_Base::THas_zero
typedef bool	CNum_cont_Base::TAscending
typedef Tparent::CMemberIndex< E_memberIndex, 4 >	CNum_cont_Base::TmemberIndex
typedef CNum_enum_Base	CNum_enum::Tparent
typedef CSerialObject	CNum_enum_Base::Tparent
typedef TSeqPos	CNum_enum_Base::TNum
typedef list< string >	CNum_enum_Base::TNames
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CNum_enum_Base::TmemberIndex
typedef CNum_real_Base	CNum_real::Tparent
typedef CSerialObject	CNum_real_Base::Tparent
typedef double	CNum_real_Base::TA
typedef double	CNum_real_Base::TB
typedef string	CNum_real_Base::TUnits
typedef Tparent::CMemberIndex< E_memberIndex, 4 >	CNum_real_Base::TmemberIndex
typedef CNum_ref_Base	CNum_ref::Tparent
typedef CSerialObject	CNum_ref_Base::Tparent
typedef EType	CNum_ref_Base::TType
typedef CSeq_align	CNum_ref_Base::TAligns
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CNum_ref_Base::TmemberIndex
typedef CNumbering_Base	CNumbering::Tparent
typedef CSerialObject	CNumbering_Base::Tparent
typedef CNum_cont	CNumbering_Base::TCont
typedef CNum_enum	CNumbering_Base::TEnum
typedef CNum_ref	CNumbering_Base::TRef
typedef CNum_real	CNumbering_Base::TReal
typedef CSerialObject	CPubdesc_Base::Tparent
typedef CPub_equiv	CPubdesc_Base::TPub
typedef string	CPubdesc_Base::TName
typedef string	CPubdesc_Base::TFig
typedef CNumbering	CPubdesc_Base::TNum
typedef bool	CPubdesc_Base::TNumexc
typedef bool	CPubdesc_Base::TPoly_a
typedef string	CPubdesc_Base::TMaploc
typedef string	CPubdesc_Base::TSeq_raw
typedef int	CPubdesc_Base::TAlign_group
typedef string	CPubdesc_Base::TComment
typedef int	CPubdesc_Base::TReftype
typedef Tparent::CMemberIndex< E_memberIndex, 12 >	CPubdesc_Base::TmemberIndex
typedef CRef_ext_Base	CRef_ext::Tparent
typedef CSeq_loc	CRef_ext_Base::Tparent
typedef CSeg_ext_Base	CSeg_ext::Tparent
typedef CSerialObject	CSeg_ext_Base::Tparent
typedef list< CRef< CSeq_loc > >	CSeg_ext_Base::Tdata
typedef CSerialObject	CSeq_annot_Base::Tparent
typedef CSerialObject	CSeq_annot_Base::C_Data::Tparent
typedef list< CRef< CSeq_feat > >	CSeq_annot_Base::C_Data::TFtable
typedef list< CRef< CSeq_align > >	CSeq_annot_Base::C_Data::TAlign
typedef list< CRef< CSeq_graph > >	CSeq_annot_Base::C_Data::TGraph
typedef list< CRef< CSeq_id > >	CSeq_annot_Base::C_Data::TIds
typedef list< CRef< CSeq_loc > >	CSeq_annot_Base::C_Data::TLocs
typedef CSeq_table	CSeq_annot_Base::C_Data::TSeq_table
typedef list< CRef< CAnnot_id > >	CSeq_annot_Base::TId
typedef int	CSeq_annot_Base::TDb
typedef string	CSeq_annot_Base::TName
typedef CAnnot_descr	CSeq_annot_Base::TDesc
typedef C_Data	CSeq_annot_Base::TData
typedef Tparent::CMemberIndex< E_memberIndex, 6 >	CSeq_annot_Base::TmemberIndex
typedef CSerialObject	CSeq_data_Base::Tparent
typedef CIUPACna	CSeq_data_Base::TIupacna
typedef CIUPACaa	CSeq_data_Base::TIupacaa
typedef CNCBI2na	CSeq_data_Base::TNcbi2na
typedef CNCBI4na	CSeq_data_Base::TNcbi4na
typedef CNCBI8na	CSeq_data_Base::TNcbi8na
typedef CNCBIpna	CSeq_data_Base::TNcbipna
typedef CNCBI8aa	CSeq_data_Base::TNcbi8aa
typedef CNCBIeaa	CSeq_data_Base::TNcbieaa
typedef CNCBIpaa	CSeq_data_Base::TNcbipaa
typedef CNCBIstdaa	CSeq_data_Base::TNcbistdaa
typedef CSeq_gap	CSeq_data_Base::TGap
typedef CSerialObject	CSeq_descr_Base::Tparent
typedef list< CRef< CSeqdesc > >	CSeq_descr_Base::Tdata
typedef CSeq_ext_Base	CSeq_ext::Tparent
typedef CSerialObject	CSeq_ext_Base::Tparent
typedef CSeg_ext	CSeq_ext_Base::TSeg
typedef CRef_ext	CSeq_ext_Base::TRef
typedef CMap_ext	CSeq_ext_Base::TMap
typedef CDelta_ext	CSeq_ext_Base::TDelta
typedef CSerialObject	CSeq_gap_Base::Tparent
typedef int	CSeq_gap_Base::TType
typedef int	CSeq_gap_Base::TLinkage
typedef list< CRef< CLinkage_evidence > >	CSeq_gap_Base::TLinkage_evidence
typedef Tparent::CMemberIndex< E_memberIndex, 4 >	CSeq_gap_Base::TmemberIndex
typedef CSeq_hist_Base	CSeq_hist::Tparent
typedef CSerialObject	CSeq_hist_Base::Tparent
typedef CSerialObject	CSeq_hist_Base::C_Deleted::Tparent
typedef bool	CSeq_hist_Base::C_Deleted::TBool
typedef CDate	CSeq_hist_Base::C_Deleted::TDate
typedef list< CRef< CSeq_align > >	CSeq_hist_Base::TAssembly
typedef CSeq_hist_rec	CSeq_hist_Base::TReplaces
typedef CSeq_hist_rec	CSeq_hist_Base::TReplaced_by
typedef C_Deleted	CSeq_hist_Base::TDeleted
typedef Tparent::CMemberIndex< E_memberIndex, 5 >	CSeq_hist_Base::TmemberIndex
typedef CSeq_hist_rec_Base	CSeq_hist_rec::Tparent
typedef CSerialObject	CSeq_hist_rec_Base::Tparent
typedef CDate	CSeq_hist_rec_Base::TDate
typedef list< CRef< CSeq_id > >	CSeq_hist_rec_Base::TIds
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CSeq_hist_rec_Base::TmemberIndex
typedef CSerialObject	CSeq_inst_Base::Tparent
typedef ERepr	CSeq_inst_Base::TRepr
typedef EMol	CSeq_inst_Base::TMol
typedef TSeqPos	CSeq_inst_Base::TLength
typedef CInt_fuzz	CSeq_inst_Base::TFuzz
typedef ETopology	CSeq_inst_Base::TTopology
typedef EStrand	CSeq_inst_Base::TStrand
typedef CSeq_data	CSeq_inst_Base::TSeq_data
typedef CSeq_ext	CSeq_inst_Base::TExt
typedef CSeq_hist	CSeq_inst_Base::THist
typedef Tparent::CMemberIndex< E_memberIndex, 10 >	CSeq_inst_Base::TmemberIndex
typedef CSerialObject	CSeq_literal_Base::Tparent
typedef TSeqPos	CSeq_literal_Base::TLength
typedef CInt_fuzz	CSeq_literal_Base::TFuzz
typedef CSeq_data	CSeq_literal_Base::TSeq_data
typedef Tparent::CMemberIndex< E_memberIndex, 4 >	CSeq_literal_Base::TmemberIndex
typedef CSerialObject	CSeqdesc_Base::Tparent
typedef EGIBB_mol	CSeqdesc_Base::TMol_type
typedef list< EGIBB_mod >	CSeqdesc_Base::TModif
typedef EGIBB_method	CSeqdesc_Base::TMethod
typedef string	CSeqdesc_Base::TName
typedef string	CSeqdesc_Base::TTitle
typedef COrg_ref	CSeqdesc_Base::TOrg
typedef string	CSeqdesc_Base::TComment
typedef CNumbering	CSeqdesc_Base::TNum
typedef CDbtag	CSeqdesc_Base::TMaploc
typedef CPIR_block	CSeqdesc_Base::TPir
typedef CGB_block	CSeqdesc_Base::TGenbank
typedef CPubdesc	CSeqdesc_Base::TPub
typedef string	CSeqdesc_Base::TRegion
typedef CUser_object	CSeqdesc_Base::TUser
typedef CSP_block	CSeqdesc_Base::TSp
typedef CDbtag	CSeqdesc_Base::TDbxref
typedef CEMBL_block	CSeqdesc_Base::TEmbl
typedef CDate	CSeqdesc_Base::TCreate_date
typedef CDate	CSeqdesc_Base::TUpdate_date
typedef CPRF_block	CSeqdesc_Base::TPrf
typedef CPDB_block	CSeqdesc_Base::TPdb
typedef CHeterogen	CSeqdesc_Base::THet
typedef CBioSource	CSeqdesc_Base::TSource
typedef CMolInfo	CSeqdesc_Base::TMolinfo
typedef CModelEvidenceSupport	CSeqdesc_Base::TModelev
typedef CTextannot_id_Base	CTextannot_id::Tparent
typedef CSerialObject	CTextannot_id_Base::Tparent
typedef string	CTextannot_id_Base::TName
typedef string	CTextannot_id_Base::TAccession
typedef string	CTextannot_id_Base::TRelease
typedef int	CTextannot_id_Base::TVersion
typedef Tparent::CMemberIndex< E_memberIndex, 5 >	CTextannot_id_Base::TmemberIndex

Enumerations
enum	CAlign_def_Base::EAlign_type { CAlign_def_Base::eAlign_type_ref = 1 , CAlign_def_Base::eAlign_type_alt = 2 , CAlign_def_Base::eAlign_type_blocks = 3 , CAlign_def_Base::eAlign_type_other = 255 }
	class of align Seq-annot More...
enum class	CAlign_def_Base::E_memberIndex { CAlign_def_Base::e__allMandatory = 0 , CAlign_def_Base::e_align_type , CAlign_def_Base::e_ids }
enum	CAnnot_id_Base::E_Choice {   CAnnot_id_Base::e_not_set = 0 , CAnnot_id_Base::e_Local , CAnnot_id_Base::e_Ncbi , CAnnot_id_Base::e_General ,   CAnnot_id_Base::e_Other }
	Choice variants. More...
enum	CAnnot_id_Base::E_ChoiceStopper { CAnnot_id_Base::e_MaxChoice = 5 }
	Maximum+1 value of the choice variant enumerator. More...
enum	CAnnotdesc_Base::E_Choice {   CAnnotdesc_Base::e_not_set = 0 , CAnnotdesc_Base::e_Name , CAnnotdesc_Base::e_Title , CAnnotdesc_Base::e_Comment ,   CAnnotdesc_Base::e_Pub , CAnnotdesc_Base::e_User , CAnnotdesc_Base::e_Create_date , CAnnotdesc_Base::e_Update_date ,   CAnnotdesc_Base::e_Src , CAnnotdesc_Base::e_Align , CAnnotdesc_Base::e_Region }
	Choice variants. More...
enum	CAnnotdesc_Base::E_ChoiceStopper { CAnnotdesc_Base::e_MaxChoice = 11 }
	Maximum+1 value of the choice variant enumerator. More...
enum class	CBioseq_Base::E_memberIndex {   CBioseq_Base::e__allMandatory = 0 , CBioseq_Base::e_id , CBioseq_Base::e_descr , CBioseq_Base::e_inst ,   CBioseq_Base::e_annot }
enum	CDelta_seq_Base::E_Choice { CDelta_seq_Base::e_not_set = 0 , CDelta_seq_Base::e_Loc , CDelta_seq_Base::e_Literal }
	Choice variants. More...
enum	CDelta_seq_Base::E_ChoiceStopper { CDelta_seq_Base::e_MaxChoice = 3 }
	Maximum+1 value of the choice variant enumerator. More...
enum	EGIBB_method {   eGIBB_method_concept_trans = 1 , eGIBB_method_seq_pept = 2 , eGIBB_method_both = 3 , eGIBB_method_seq_pept_overlap = 4 ,   eGIBB_method_seq_pept_homol = 5 , eGIBB_method_concept_trans_a = 6 , eGIBB_method_other = 255 }
	sequencing methods More...
enum	EGIBB_mod {   eGIBB_mod_dna = 0 , eGIBB_mod_rna = 1 , eGIBB_mod_extrachrom = 2 , eGIBB_mod_plasmid = 3 ,   eGIBB_mod_mitochondrial = 4 , eGIBB_mod_chloroplast = 5 , eGIBB_mod_kinetoplast = 6 , eGIBB_mod_cyanelle = 7 ,   eGIBB_mod_synthetic = 8 , eGIBB_mod_recombinant = 9 , eGIBB_mod_partial = 10 , eGIBB_mod_complete = 11 ,   eGIBB_mod_mutagen = 12 , eGIBB_mod_natmut = 13 , eGIBB_mod_transposon = 14 , eGIBB_mod_insertion_seq = 15 ,   eGIBB_mod_no_left = 16 , eGIBB_mod_no_right = 17 , eGIBB_mod_macronuclear = 18 , eGIBB_mod_proviral = 19 ,   eGIBB_mod_est = 20 , eGIBB_mod_sts = 21 , eGIBB_mod_survey = 22 , eGIBB_mod_chromoplast = 23 ,   eGIBB_mod_genemap = 24 , eGIBB_mod_restmap = 25 , eGIBB_mod_physmap = 26 , eGIBB_mod_other = 255 }
	GenInfo Backbone modifiers. More...
enum	EGIBB_mol {   eGIBB_mol_unknown = 0 , eGIBB_mol_genomic = 1 , eGIBB_mol_pre_mRNA = 2 , eGIBB_mol_mRNA = 3 ,   eGIBB_mol_rRNA = 4 , eGIBB_mol_tRNA = 5 , eGIBB_mol_snRNA = 6 , eGIBB_mol_scRNA = 7 ,   eGIBB_mol_peptide = 8 , eGIBB_mol_other_genetic = 9 , eGIBB_mol_genomic_mRNA = 10 , eGIBB_mol_other = 255 }
	type of molecule represented More...
enum	CLinkage_evidence_Base::EType {   CLinkage_evidence_Base::eType_paired_ends = 0 , CLinkage_evidence_Base::eType_align_genus = 1 , CLinkage_evidence_Base::eType_align_xgenus = 2 , CLinkage_evidence_Base::eType_align_trnscpt = 3 ,   CLinkage_evidence_Base::eType_within_clone = 4 , CLinkage_evidence_Base::eType_clone_contig = 5 , CLinkage_evidence_Base::eType_map = 6 , CLinkage_evidence_Base::eType_strobe = 7 ,   CLinkage_evidence_Base::eType_unspecified = 8 , CLinkage_evidence_Base::eType_pcr = 9 , CLinkage_evidence_Base::eType_proximity_ligation = 10 , CLinkage_evidence_Base::eType_other = 255 }
enum class	CLinkage_evidence_Base::E_memberIndex { CLinkage_evidence_Base::e__allMandatory = 0 , CLinkage_evidence_Base::e_type }
enum	CMolInfo_Base::EBiomol {   CMolInfo_Base::eBiomol_unknown = 0 , CMolInfo_Base::eBiomol_genomic = 1 , CMolInfo_Base::eBiomol_pre_RNA = 2 , CMolInfo_Base::eBiomol_mRNA = 3 ,   CMolInfo_Base::eBiomol_rRNA = 4 , CMolInfo_Base::eBiomol_tRNA = 5 , CMolInfo_Base::eBiomol_snRNA = 6 , CMolInfo_Base::eBiomol_scRNA = 7 ,   CMolInfo_Base::eBiomol_peptide = 8 , CMolInfo_Base::eBiomol_other_genetic = 9 , CMolInfo_Base::eBiomol_genomic_mRNA = 10 , CMolInfo_Base::eBiomol_cRNA = 11 ,   CMolInfo_Base::eBiomol_snoRNA = 12 , CMolInfo_Base::eBiomol_transcribed_RNA = 13 , CMolInfo_Base::eBiomol_ncRNA = 14 , CMolInfo_Base::eBiomol_tmRNA = 15 ,   CMolInfo_Base::eBiomol_other = 255 }
enum	CMolInfo_Base::ETech {   CMolInfo_Base::eTech_unknown = 0 , CMolInfo_Base::eTech_standard = 1 , CMolInfo_Base::eTech_est = 2 , CMolInfo_Base::eTech_sts = 3 ,   CMolInfo_Base::eTech_survey = 4 , CMolInfo_Base::eTech_genemap = 5 , CMolInfo_Base::eTech_physmap = 6 , CMolInfo_Base::eTech_derived = 7 ,   CMolInfo_Base::eTech_concept_trans = 8 , CMolInfo_Base::eTech_seq_pept = 9 , CMolInfo_Base::eTech_both = 10 , CMolInfo_Base::eTech_seq_pept_overlap = 11 ,   CMolInfo_Base::eTech_seq_pept_homol = 12 , CMolInfo_Base::eTech_concept_trans_a = 13 , CMolInfo_Base::eTech_htgs_1 = 14 , CMolInfo_Base::eTech_htgs_2 = 15 ,   CMolInfo_Base::eTech_htgs_3 = 16 , CMolInfo_Base::eTech_fli_cdna = 17 , CMolInfo_Base::eTech_htgs_0 = 18 , CMolInfo_Base::eTech_htc = 19 ,   CMolInfo_Base::eTech_wgs = 20 , CMolInfo_Base::eTech_barcode = 21 , CMolInfo_Base::eTech_composite_wgs_htgs = 22 , CMolInfo_Base::eTech_tsa = 23 ,   CMolInfo_Base::eTech_targeted = 24 , CMolInfo_Base::eTech_other = 255 }
enum	CMolInfo_Base::ECompleteness {   CMolInfo_Base::eCompleteness_unknown = 0 , CMolInfo_Base::eCompleteness_complete = 1 , CMolInfo_Base::eCompleteness_partial = 2 , CMolInfo_Base::eCompleteness_no_left = 3 ,   CMolInfo_Base::eCompleteness_no_right = 4 , CMolInfo_Base::eCompleteness_no_ends = 5 , CMolInfo_Base::eCompleteness_has_left = 6 , CMolInfo_Base::eCompleteness_has_right = 7 ,   CMolInfo_Base::eCompleteness_other = 255 }
enum class	CMolInfo_Base::E_memberIndex {   CMolInfo_Base::e__allMandatory = 0 , CMolInfo_Base::e_biomol , CMolInfo_Base::e_tech , CMolInfo_Base::e_techexp ,   CMolInfo_Base::e_completeness , CMolInfo_Base::e_gbmoltype }
enum class	CNum_cont_Base::E_memberIndex { CNum_cont_Base::e__allMandatory = 0 , CNum_cont_Base::e_refnum , CNum_cont_Base::e_has_zero , CNum_cont_Base::e_ascending }
enum class	CNum_enum_Base::E_memberIndex { CNum_enum_Base::e__allMandatory = 0 , CNum_enum_Base::e_num , CNum_enum_Base::e_names }
enum class	CNum_real_Base::E_memberIndex { CNum_real_Base::e__allMandatory = 0 , CNum_real_Base::e_a , CNum_real_Base::e_b , CNum_real_Base::e_units }
enum	CNum_ref_Base::EType { CNum_ref_Base::eType_not_set = 0 , CNum_ref_Base::eType_sources = 1 , CNum_ref_Base::eType_aligns = 2 }
	type of reference More...
enum class	CNum_ref_Base::E_memberIndex { CNum_ref_Base::e__allMandatory = 0 , CNum_ref_Base::e_type , CNum_ref_Base::e_aligns }
enum	CNumbering_Base::E_Choice {   CNumbering_Base::e_not_set = 0 , CNumbering_Base::e_Cont , CNumbering_Base::e_Enum , CNumbering_Base::e_Ref ,   CNumbering_Base::e_Real }
	Choice variants. More...
enum	CNumbering_Base::E_ChoiceStopper { CNumbering_Base::e_MaxChoice = 5 }
	Maximum+1 value of the choice variant enumerator. More...
enum	CPubdesc_Base::EReftype { CPubdesc_Base::eReftype_seq = 0 , CPubdesc_Base::eReftype_sites = 1 , CPubdesc_Base::eReftype_feats = 2 , CPubdesc_Base::eReftype_no_target = 3 }
	type of reference in a GenBank record More...
enum class	CPubdesc_Base::E_memberIndex {   CPubdesc_Base::e__allMandatory = 0 , CPubdesc_Base::e_pub , CPubdesc_Base::e_name , CPubdesc_Base::e_fig ,   CPubdesc_Base::e_num , CPubdesc_Base::e_numexc , CPubdesc_Base::e_poly_a , CPubdesc_Base::e_maploc ,   CPubdesc_Base::e_seq_raw , CPubdesc_Base::e_align_group , CPubdesc_Base::e_comment , CPubdesc_Base::e_reftype }
enum	CSeq_annot_Base::EDb {   CSeq_annot_Base::eDb_genbank = 1 , CSeq_annot_Base::eDb_embl = 2 , CSeq_annot_Base::eDb_ddbj = 3 , CSeq_annot_Base::eDb_pir = 4 ,   CSeq_annot_Base::eDb_sp = 5 , CSeq_annot_Base::eDb_bbone = 6 , CSeq_annot_Base::eDb_pdb = 7 , CSeq_annot_Base::eDb_other = 255 }
	source of annotation More...
enum	CSeq_annot_Base::C_Data::E_Choice {   CSeq_annot_Base::C_Data::e_not_set = 0 , CSeq_annot_Base::C_Data::e_Ftable , CSeq_annot_Base::C_Data::e_Align , CSeq_annot_Base::C_Data::e_Graph ,   CSeq_annot_Base::C_Data::e_Ids , CSeq_annot_Base::C_Data::e_Locs , CSeq_annot_Base::C_Data::e_Seq_table }
	Choice variants. More...
enum	CSeq_annot_Base::C_Data::E_ChoiceStopper { CSeq_annot_Base::C_Data::e_MaxChoice = 7 }
	Maximum+1 value of the choice variant enumerator. More...
enum class	CSeq_annot_Base::E_memberIndex {   CSeq_annot_Base::e__allMandatory = 0 , CSeq_annot_Base::e_id , CSeq_annot_Base::e_db , CSeq_annot_Base::e_name ,   CSeq_annot_Base::e_desc , CSeq_annot_Base::e_data }
enum	CSeq_data_Base::E_Choice {   CSeq_data_Base::e_not_set = 0 , CSeq_data_Base::e_Iupacna , CSeq_data_Base::e_Iupacaa , CSeq_data_Base::e_Ncbi2na ,   CSeq_data_Base::e_Ncbi4na , CSeq_data_Base::e_Ncbi8na , CSeq_data_Base::e_Ncbipna , CSeq_data_Base::e_Ncbi8aa ,   CSeq_data_Base::e_Ncbieaa , CSeq_data_Base::e_Ncbipaa , CSeq_data_Base::e_Ncbistdaa , CSeq_data_Base::e_Gap }
	Choice variants. More...
enum	CSeq_data_Base::E_ChoiceStopper { CSeq_data_Base::e_MaxChoice = 12 }
	Maximum+1 value of the choice variant enumerator. More...
enum	CSeq_ext_Base::E_Choice {   CSeq_ext_Base::e_not_set = 0 , CSeq_ext_Base::e_Seg , CSeq_ext_Base::e_Ref , CSeq_ext_Base::e_Map ,   CSeq_ext_Base::e_Delta }
	Choice variants. More...
enum	CSeq_ext_Base::E_ChoiceStopper { CSeq_ext_Base::e_MaxChoice = 5 }
	Maximum+1 value of the choice variant enumerator. More...
enum	CSeq_gap_Base::EType {   CSeq_gap_Base::eType_unknown = 0 , CSeq_gap_Base::eType_fragment = 1 , CSeq_gap_Base::eType_clone = 2 , CSeq_gap_Base::eType_short_arm = 3 ,   CSeq_gap_Base::eType_heterochromatin = 4 , CSeq_gap_Base::eType_centromere = 5 , CSeq_gap_Base::eType_telomere = 6 , CSeq_gap_Base::eType_repeat = 7 ,   CSeq_gap_Base::eType_contig = 8 , CSeq_gap_Base::eType_scaffold = 9 , CSeq_gap_Base::eType_contamination = 10 , CSeq_gap_Base::eType_other = 255 }
enum	CSeq_gap_Base::ELinkage { CSeq_gap_Base::eLinkage_unlinked = 0 , CSeq_gap_Base::eLinkage_linked = 1 , CSeq_gap_Base::eLinkage_other = 255 }
enum class	CSeq_gap_Base::E_memberIndex { CSeq_gap_Base::e__allMandatory = 0 , CSeq_gap_Base::e_type , CSeq_gap_Base::e_linkage , CSeq_gap_Base::e_linkage_evidence }
enum	CSeq_hist_Base::C_Deleted::E_Choice { CSeq_hist_Base::C_Deleted::e_not_set = 0 , CSeq_hist_Base::C_Deleted::e_Bool , CSeq_hist_Base::C_Deleted::e_Date }
	Choice variants. More...
enum	CSeq_hist_Base::C_Deleted::E_ChoiceStopper { CSeq_hist_Base::C_Deleted::e_MaxChoice = 3 }
	Maximum+1 value of the choice variant enumerator. More...
enum class	CSeq_hist_Base::E_memberIndex {   CSeq_hist_Base::e__allMandatory = 0 , CSeq_hist_Base::e_assembly , CSeq_hist_Base::e_replaces , CSeq_hist_Base::e_replaced_by ,   CSeq_hist_Base::e_deleted }
enum class	CSeq_hist_rec_Base::E_memberIndex { CSeq_hist_rec_Base::e__allMandatory = 0 , CSeq_hist_rec_Base::e_date , CSeq_hist_rec_Base::e_ids }
enum	CSeq_inst_Base::ERepr {   CSeq_inst_Base::eRepr_not_set = 0 , CSeq_inst_Base::eRepr_virtual = 1 , CSeq_inst_Base::eRepr_raw = 2 , CSeq_inst_Base::eRepr_seg = 3 ,   CSeq_inst_Base::eRepr_const = 4 , CSeq_inst_Base::eRepr_ref = 5 , CSeq_inst_Base::eRepr_consen = 6 , CSeq_inst_Base::eRepr_map = 7 ,   CSeq_inst_Base::eRepr_delta = 8 , CSeq_inst_Base::eRepr_other = 255 }
	representation class More...
enum	CSeq_inst_Base::EMol {   CSeq_inst_Base::eMol_not_set = 0 , CSeq_inst_Base::eMol_dna = 1 , CSeq_inst_Base::eMol_rna = 2 , CSeq_inst_Base::eMol_aa = 3 ,   CSeq_inst_Base::eMol_na = 4 , CSeq_inst_Base::eMol_other = 255 }
	molecule class in living organism More...
enum	CSeq_inst_Base::ETopology {   CSeq_inst_Base::eTopology_not_set = 0 , CSeq_inst_Base::eTopology_linear = 1 , CSeq_inst_Base::eTopology_circular = 2 , CSeq_inst_Base::eTopology_tandem = 3 ,   CSeq_inst_Base::eTopology_other = 255 }
	topology of molecule More...
enum	CSeq_inst_Base::EStrand {   CSeq_inst_Base::eStrand_not_set = 0 , CSeq_inst_Base::eStrand_ss = 1 , CSeq_inst_Base::eStrand_ds = 2 , CSeq_inst_Base::eStrand_mixed = 3 ,   CSeq_inst_Base::eStrand_other = 255 }
	strandedness in living organism More...
enum class	CSeq_inst_Base::E_memberIndex {   CSeq_inst_Base::e__allMandatory = 0 , CSeq_inst_Base::e_repr , CSeq_inst_Base::e_mol , CSeq_inst_Base::e_length ,   CSeq_inst_Base::e_fuzz , CSeq_inst_Base::e_topology , CSeq_inst_Base::e_strand , CSeq_inst_Base::e_seq_data ,   CSeq_inst_Base::e_ext , CSeq_inst_Base::e_hist }
enum class	CSeq_literal_Base::E_memberIndex { CSeq_literal_Base::e__allMandatory = 0 , CSeq_literal_Base::e_length , CSeq_literal_Base::e_fuzz , CSeq_literal_Base::e_seq_data }
enum	CSeqdesc_Base::E_Choice {   CSeqdesc_Base::e_not_set = 0 , CSeqdesc_Base::e_Mol_type , CSeqdesc_Base::e_Modif , CSeqdesc_Base::e_Method ,   CSeqdesc_Base::e_Name , CSeqdesc_Base::e_Title , CSeqdesc_Base::e_Org , CSeqdesc_Base::e_Comment ,   CSeqdesc_Base::e_Num , CSeqdesc_Base::e_Maploc , CSeqdesc_Base::e_Pir , CSeqdesc_Base::e_Genbank ,   CSeqdesc_Base::e_Pub , CSeqdesc_Base::e_Region , CSeqdesc_Base::e_User , CSeqdesc_Base::e_Sp ,   CSeqdesc_Base::e_Dbxref , CSeqdesc_Base::e_Embl , CSeqdesc_Base::e_Create_date , CSeqdesc_Base::e_Update_date ,   CSeqdesc_Base::e_Prf , CSeqdesc_Base::e_Pdb , CSeqdesc_Base::e_Het , CSeqdesc_Base::e_Source ,   CSeqdesc_Base::e_Molinfo , CSeqdesc_Base::e_Modelev }
	Choice variants. More...
enum	CSeqdesc_Base::E_ChoiceStopper { CSeqdesc_Base::e_MaxChoice = 26 }
	Maximum+1 value of the choice variant enumerator. More...
enum class	CTextannot_id_Base::E_memberIndex {   CTextannot_id_Base::e__allMandatory = 0 , CTextannot_id_Base::e_name , CTextannot_id_Base::e_accession , CTextannot_id_Base::e_release ,   CTextannot_id_Base::e_version }

Functions
	CAlign_def::CAlign_def (void)
	CAlign_def::~CAlign_def (void)
	CAlign_def::CAlign_def (const CAlign_def &value)
CAlign_def &	CAlign_def::operator= (const CAlign_def &value)
	CAlign_def_Base::CAlign_def_Base (void)
virtual	CAlign_def_Base::~CAlign_def_Base (void)
	CAlign_def_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CAlign_def_Base::EAlign_type (void)
	Access to EAlign_type's attributes (values, names) as defined in spec. More...
bool	CAlign_def_Base::IsSetAlign_type (void) const
	Check if a value has been assigned to Align_type data member. More...
bool	CAlign_def_Base::CanGetAlign_type (void) const
	Check if it is safe to call GetAlign_type method. More...
void	CAlign_def_Base::ResetAlign_type (void)
	Reset Align_type data member. More...
TAlign_type	CAlign_def_Base::GetAlign_type (void) const
	Get the Align_type member data. More...
void	CAlign_def_Base::SetAlign_type (TAlign_type value)
	Assign a value to Align_type data member. More...
TAlign_type &	CAlign_def_Base::SetAlign_type (void)
	Assign a value to Align_type data member. More...
bool	CAlign_def_Base::IsSetIds (void) const
	used for the one ref seqid for now Check if a value has been assigned to Ids data member. More...
bool	CAlign_def_Base::CanGetIds (void) const
	Check if it is safe to call GetIds method. More...
void	CAlign_def_Base::ResetIds (void)
	Reset Ids data member. More...
const TIds &	CAlign_def_Base::GetIds (void) const
	Get the Ids member data. More...
TIds &	CAlign_def_Base::SetIds (void)
	Assign a value to Ids data member. More...
virtual void	CAlign_def_Base::Reset (void)
	Reset the whole object. More...
	CAlign_def_Base::CAlign_def_Base (const CAlign_def_Base &)
CAlign_def_Base &	CAlign_def_Base::operator= (const CAlign_def_Base &)
	CAnnot_descr::CAnnot_descr (void)
	CAnnot_descr::~CAnnot_descr (void)
	CAnnot_descr::CAnnot_descr (const CAnnot_descr &value)
CAnnot_descr &	CAnnot_descr::operator= (const CAnnot_descr &value)
	CAnnot_descr_Base::CAnnot_descr_Base (void)
virtual	CAnnot_descr_Base::~CAnnot_descr_Base (void)
	CAnnot_descr_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CAnnot_descr_Base::IsSet (void) const
	Check if a value has been assigned to data member. More...
bool	CAnnot_descr_Base::CanGet (void) const
	Check if it is safe to call Get method. More...
void	CAnnot_descr_Base::Reset (void)
	Reset data member. More...
const Tdata &	CAnnot_descr_Base::Get (void) const
	Get the member data. More...
Tdata &	CAnnot_descr_Base::Set (void)
	Assign a value to data member. More...
	CAnnot_descr_Base::operator const Tdata & (void) const
	Conversion operator to 'const Tdata' type. More...
	CAnnot_descr_Base::operator Tdata & (void)
	Conversion operator to 'Tdata' type. More...
	CAnnot_descr_Base::CAnnot_descr_Base (const CAnnot_descr_Base &)
CAnnot_descr_Base &	CAnnot_descr_Base::operator= (const CAnnot_descr_Base &)
	CAnnot_id::CAnnot_id (void)
	CAnnot_id::~CAnnot_id (void)
	CAnnot_id::CAnnot_id (const CAnnot_id &value)
CAnnot_id &	CAnnot_id::operator= (const CAnnot_id &value)
	CAnnot_id_Base::CAnnot_id_Base (void)
virtual	CAnnot_id_Base::~CAnnot_id_Base (void)
	CAnnot_id_Base::DECLARE_INTERNAL_TYPE_INFO ()
virtual void	CAnnot_id_Base::Reset (void)
	Reset the whole object. More...
virtual void	CAnnot_id_Base::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CAnnot_id_Base::Which (void) const
	Which variant is currently selected. More...
void	CAnnot_id_Base::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CAnnot_id_Base::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CAnnot_id_Base::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CAnnot_id_Base::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CAnnot_id_Base::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CAnnot_id_Base::IsLocal (void) const
	Check if variant Local is selected. More...
const TLocal &	CAnnot_id_Base::GetLocal (void) const
	Get the variant data. More...
TLocal &	CAnnot_id_Base::SetLocal (void)
	Select the variant. More...
void	CAnnot_id_Base::SetLocal (TLocal &value)
	Select the variant and set its data. More...
bool	CAnnot_id_Base::IsNcbi (void) const
	Check if variant Ncbi is selected. More...
TNcbi	CAnnot_id_Base::GetNcbi (void) const
	Get the variant data. More...
TNcbi &	CAnnot_id_Base::SetNcbi (void)
	Select the variant. More...
void	CAnnot_id_Base::SetNcbi (TNcbi value)
	Select the variant and set its data. More...
bool	CAnnot_id_Base::IsGeneral (void) const
	Check if variant General is selected. More...
const TGeneral &	CAnnot_id_Base::GetGeneral (void) const
	Get the variant data. More...
TGeneral &	CAnnot_id_Base::SetGeneral (void)
	Select the variant. More...
void	CAnnot_id_Base::SetGeneral (TGeneral &value)
	Select the variant and set its data. More...
bool	CAnnot_id_Base::IsOther (void) const
	Check if variant Other is selected. More...
const TOther &	CAnnot_id_Base::GetOther (void) const
	Get the variant data. More...
TOther &	CAnnot_id_Base::SetOther (void)
	Select the variant. More...
void	CAnnot_id_Base::SetOther (TOther &value)
	Select the variant and set its data. More...
	CAnnot_id_Base::CAnnot_id_Base (const CAnnot_id_Base &)
CAnnot_id_Base &	CAnnot_id_Base::operator= (const CAnnot_id_Base &)
void	CAnnot_id_Base::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
	CAnnotdesc::CAnnotdesc (void)
	CAnnotdesc::~CAnnotdesc (void)
	CAnnotdesc::CAnnotdesc (const CAnnotdesc &value)
CAnnotdesc &	CAnnotdesc::operator= (const CAnnotdesc &value)
	CAnnotdesc_Base::CAnnotdesc_Base (void)
virtual	CAnnotdesc_Base::~CAnnotdesc_Base (void)
	CAnnotdesc_Base::DECLARE_INTERNAL_TYPE_INFO ()
virtual void	CAnnotdesc_Base::Reset (void)
	Reset the whole object. More...
virtual void	CAnnotdesc_Base::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CAnnotdesc_Base::Which (void) const
	Which variant is currently selected. More...
void	CAnnotdesc_Base::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CAnnotdesc_Base::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CAnnotdesc_Base::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CAnnotdesc_Base::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CAnnotdesc_Base::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CAnnotdesc_Base::IsName (void) const
	Check if variant Name is selected. More...
const TName &	CAnnotdesc_Base::GetName (void) const
	Get the variant data. More...
TName &	CAnnotdesc_Base::SetName (void)
	Select the variant. More...
void	CAnnotdesc_Base::SetName (const TName &value)
	Select the variant and set its data. More...
bool	CAnnotdesc_Base::IsTitle (void) const
	Check if variant Title is selected. More...
const TTitle &	CAnnotdesc_Base::GetTitle (void) const
	Get the variant data. More...
TTitle &	CAnnotdesc_Base::SetTitle (void)
	Select the variant. More...
void	CAnnotdesc_Base::SetTitle (const TTitle &value)
	Select the variant and set its data. More...
bool	CAnnotdesc_Base::IsComment (void) const
	Check if variant Comment is selected. More...
const TComment &	CAnnotdesc_Base::GetComment (void) const
	Get the variant data. More...
TComment &	CAnnotdesc_Base::SetComment (void)
	Select the variant. More...
void	CAnnotdesc_Base::SetComment (const TComment &value)
	Select the variant and set its data. More...
bool	CAnnotdesc_Base::IsPub (void) const
	Check if variant Pub is selected. More...
const TPub &	CAnnotdesc_Base::GetPub (void) const
	Get the variant data. More...
TPub &	CAnnotdesc_Base::SetPub (void)
	Select the variant. More...
void	CAnnotdesc_Base::SetPub (TPub &value)
	Select the variant and set its data. More...
bool	CAnnotdesc_Base::IsUser (void) const
	Check if variant User is selected. More...
const TUser &	CAnnotdesc_Base::GetUser (void) const
	Get the variant data. More...
TUser &	CAnnotdesc_Base::SetUser (void)
	Select the variant. More...
void	CAnnotdesc_Base::SetUser (TUser &value)
	Select the variant and set its data. More...
bool	CAnnotdesc_Base::IsCreate_date (void) const
	Check if variant Create_date is selected. More...
const TCreate_date &	CAnnotdesc_Base::GetCreate_date (void) const
	Get the variant data. More...
TCreate_date &	CAnnotdesc_Base::SetCreate_date (void)
	Select the variant. More...
void	CAnnotdesc_Base::SetCreate_date (TCreate_date &value)
	Select the variant and set its data. More...
bool	CAnnotdesc_Base::IsUpdate_date (void) const
	Check if variant Update_date is selected. More...
const TUpdate_date &	CAnnotdesc_Base::GetUpdate_date (void) const
	Get the variant data. More...
TUpdate_date &	CAnnotdesc_Base::SetUpdate_date (void)
	Select the variant. More...
void	CAnnotdesc_Base::SetUpdate_date (TUpdate_date &value)
	Select the variant and set its data. More...
bool	CAnnotdesc_Base::IsSrc (void) const
	Check if variant Src is selected. More...
const TSrc &	CAnnotdesc_Base::GetSrc (void) const
	Get the variant data. More...
TSrc &	CAnnotdesc_Base::SetSrc (void)
	Select the variant. More...
void	CAnnotdesc_Base::SetSrc (TSrc &value)
	Select the variant and set its data. More...
bool	CAnnotdesc_Base::IsAlign (void) const
	Check if variant Align is selected. More...
const TAlign &	CAnnotdesc_Base::GetAlign (void) const
	Get the variant data. More...
TAlign &	CAnnotdesc_Base::SetAlign (void)
	Select the variant. More...
void	CAnnotdesc_Base::SetAlign (TAlign &value)
	Select the variant and set its data. More...
bool	CAnnotdesc_Base::IsRegion (void) const
	Check if variant Region is selected. More...
const TRegion &	CAnnotdesc_Base::GetRegion (void) const
	Get the variant data. More...
TRegion &	CAnnotdesc_Base::SetRegion (void)
	Select the variant. More...
void	CAnnotdesc_Base::SetRegion (TRegion &value)
	Select the variant and set its data. More...
	CAnnotdesc_Base::CAnnotdesc_Base (const CAnnotdesc_Base &)
CAnnotdesc_Base &	CAnnotdesc_Base::operator= (const CAnnotdesc_Base &)
void	CAnnotdesc_Base::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
	CBioseq_Base::CBioseq_Base (void)
virtual	CBioseq_Base::~CBioseq_Base (void)
	CBioseq_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CBioseq_Base::IsSetId (void) const
	equivalent identifiers Check if a value has been assigned to Id data member. More...
bool	CBioseq_Base::CanGetId (void) const
	Check if it is safe to call GetId method. More...
void	CBioseq_Base::ResetId (void)
	Reset Id data member. More...
const TId &	CBioseq_Base::GetId (void) const
	Get the Id member data. More...
TId &	CBioseq_Base::SetId (void)
	Assign a value to Id data member. More...
bool	CBioseq_Base::IsSetDescr (void) const
	descriptors Check if a value has been assigned to Descr data member. More...
bool	CBioseq_Base::CanGetDescr (void) const
	Check if it is safe to call GetDescr method. More...
void	CBioseq_Base::ResetDescr (void)
	Reset Descr data member. More...
const TDescr &	CBioseq_Base::GetDescr (void) const
	Get the Descr member data. More...
void	CBioseq_Base::SetDescr (TDescr &value)
	Assign a value to Descr data member. More...
TDescr &	CBioseq_Base::SetDescr (void)
	Assign a value to Descr data member. More...
bool	CBioseq_Base::IsSetInst (void) const
	the sequence data Check if a value has been assigned to Inst data member. More...
bool	CBioseq_Base::CanGetInst (void) const
	Check if it is safe to call GetInst method. More...
void	CBioseq_Base::ResetInst (void)
	Reset Inst data member. More...
const TInst &	CBioseq_Base::GetInst (void) const
	Get the Inst member data. More...
void	CBioseq_Base::SetInst (TInst &value)
	Assign a value to Inst data member. More...
TInst &	CBioseq_Base::SetInst (void)
	Assign a value to Inst data member. More...
bool	CBioseq_Base::IsSetAnnot (void) const
	Check if a value has been assigned to Annot data member. More...
bool	CBioseq_Base::CanGetAnnot (void) const
	Check if it is safe to call GetAnnot method. More...
void	CBioseq_Base::ResetAnnot (void)
	Reset Annot data member. More...
const TAnnot &	CBioseq_Base::GetAnnot (void) const
	Get the Annot member data. More...
TAnnot &	CBioseq_Base::SetAnnot (void)
	Assign a value to Annot data member. More...
virtual void	CBioseq_Base::Reset (void)
	Reset the whole object. More...
	CBioseq_Base::CBioseq_Base (const CBioseq_Base &)
CBioseq_Base &	CBioseq_Base::operator= (const CBioseq_Base &)
	CDelta_ext_Base::CDelta_ext_Base (void)
virtual	CDelta_ext_Base::~CDelta_ext_Base (void)
	CDelta_ext_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CDelta_ext_Base::IsSet (void) const
	Check if a value has been assigned to data member. More...
bool	CDelta_ext_Base::CanGet (void) const
	Check if it is safe to call Get method. More...
void	CDelta_ext_Base::Reset (void)
	Reset data member. More...
const Tdata &	CDelta_ext_Base::Get (void) const
	Get the member data. More...
Tdata &	CDelta_ext_Base::Set (void)
	Assign a value to data member. More...
	CDelta_ext_Base::operator const Tdata & (void) const
	Conversion operator to 'const Tdata' type. More...
	CDelta_ext_Base::operator Tdata & (void)
	Conversion operator to 'Tdata' type. More...
	CDelta_ext_Base::CDelta_ext_Base (const CDelta_ext_Base &)
CDelta_ext_Base &	CDelta_ext_Base::operator= (const CDelta_ext_Base &)
	CDelta_seq::CDelta_seq (void)
	CDelta_seq::~CDelta_seq (void)
	CDelta_seq::CDelta_seq (const CDelta_seq &value)
CDelta_seq &	CDelta_seq::operator= (const CDelta_seq &value)
	CDelta_seq_Base::CDelta_seq_Base (void)
virtual	CDelta_seq_Base::~CDelta_seq_Base (void)
	CDelta_seq_Base::DECLARE_INTERNAL_TYPE_INFO ()
virtual void	CDelta_seq_Base::Reset (void)
	Reset the whole object. More...
virtual void	CDelta_seq_Base::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CDelta_seq_Base::Which (void) const
	Which variant is currently selected. More...
void	CDelta_seq_Base::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CDelta_seq_Base::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CDelta_seq_Base::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CDelta_seq_Base::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CDelta_seq_Base::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CDelta_seq_Base::IsLoc (void) const
	Check if variant Loc is selected. More...
const TLoc &	CDelta_seq_Base::GetLoc (void) const
	Get the variant data. More...
TLoc &	CDelta_seq_Base::SetLoc (void)
	Select the variant. More...
void	CDelta_seq_Base::SetLoc (TLoc &value)
	Select the variant and set its data. More...
bool	CDelta_seq_Base::IsLiteral (void) const
	Check if variant Literal is selected. More...
const TLiteral &	CDelta_seq_Base::GetLiteral (void) const
	Get the variant data. More...
TLiteral &	CDelta_seq_Base::SetLiteral (void)
	Select the variant. More...
void	CDelta_seq_Base::SetLiteral (TLiteral &value)
	Select the variant and set its data. More...
	CDelta_seq_Base::CDelta_seq_Base (const CDelta_seq_Base &)
CDelta_seq_Base &	CDelta_seq_Base::operator= (const CDelta_seq_Base &)
void	CDelta_seq_Base::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
	CHeterogen::CHeterogen (void)
	CHeterogen::CHeterogen (const std::string &value)
	Explicit constructor from the primitive type. More...
	CHeterogen_Base::CHeterogen_Base (void)
	CHeterogen_Base::DECLARE_STD_ALIAS_TYPE_INFO ()
	CHeterogen_Base::CHeterogen_Base (const string &data)
NCBI_NS_NCBI::CNcbiOstream &	operator<< (NCBI_NS_NCBI::CNcbiOstream &str, const CHeterogen_Base &obj)
NCBI_NS_NCBI::CNcbiIstream &	operator>> (NCBI_NS_NCBI::CNcbiIstream &str, CHeterogen_Base &obj)
	CIUPACaa::CIUPACaa (void)
	CIUPACaa::CIUPACaa (const std::string &value)
	Explicit constructor from the primitive type. More...
	CIUPACaa_Base::CIUPACaa_Base (void)
	CIUPACaa_Base::DECLARE_STD_ALIAS_TYPE_INFO ()
	CIUPACaa_Base::CIUPACaa_Base (const string &data)
NCBI_NS_NCBI::CNcbiOstream &	operator<< (NCBI_NS_NCBI::CNcbiOstream &str, const CIUPACaa_Base &obj)
NCBI_NS_NCBI::CNcbiIstream &	operator>> (NCBI_NS_NCBI::CNcbiIstream &str, CIUPACaa_Base &obj)
	CIUPACna::CIUPACna (void)
	CIUPACna::CIUPACna (const std::string &value)
	Explicit constructor from the primitive type. More...
	CIUPACna_Base::CIUPACna_Base (void)
	CIUPACna_Base::DECLARE_STD_ALIAS_TYPE_INFO ()
	CIUPACna_Base::CIUPACna_Base (const string &data)
NCBI_NS_NCBI::CNcbiOstream &	operator<< (NCBI_NS_NCBI::CNcbiOstream &str, const CIUPACna_Base &obj)
NCBI_NS_NCBI::CNcbiIstream &	operator>> (NCBI_NS_NCBI::CNcbiIstream &str, CIUPACna_Base &obj)
	CLinkage_evidence_Base::CLinkage_evidence_Base (void)
virtual	CLinkage_evidence_Base::~CLinkage_evidence_Base (void)
	CLinkage_evidence_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CLinkage_evidence_Base::EType (void)
	Access to EType's attributes (values, names) as defined in spec. More...
bool	CLinkage_evidence_Base::IsSetType (void) const
	Check if a value has been assigned to Type data member. More...
bool	CLinkage_evidence_Base::CanGetType (void) const
	Check if it is safe to call GetType method. More...
void	CLinkage_evidence_Base::ResetType (void)
	Reset Type data member. More...
TType	CLinkage_evidence_Base::GetType (void) const
	Get the Type member data. More...
void	CLinkage_evidence_Base::SetType (TType value)
	Assign a value to Type data member. More...
TType &	CLinkage_evidence_Base::SetType (void)
	Assign a value to Type data member. More...
virtual void	CLinkage_evidence_Base::Reset (void)
	Reset the whole object. More...
	CLinkage_evidence_Base::CLinkage_evidence_Base (const CLinkage_evidence_Base &)
CLinkage_evidence_Base &	CLinkage_evidence_Base::operator= (const CLinkage_evidence_Base &)
	CMap_ext::CMap_ext (void)
	CMap_ext::~CMap_ext (void)
	CMap_ext::CMap_ext (const CMap_ext &value)
CMap_ext &	CMap_ext::operator= (const CMap_ext &value)
	CMap_ext_Base::CMap_ext_Base (void)
virtual	CMap_ext_Base::~CMap_ext_Base (void)
	CMap_ext_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMap_ext_Base::IsSet (void) const
	Check if a value has been assigned to data member. More...
bool	CMap_ext_Base::CanGet (void) const
	Check if it is safe to call Get method. More...
void	CMap_ext_Base::Reset (void)
	Reset data member. More...
const Tdata &	CMap_ext_Base::Get (void) const
	Get the member data. More...
Tdata &	CMap_ext_Base::Set (void)
	Assign a value to data member. More...
	CMap_ext_Base::operator const Tdata & (void) const
	Conversion operator to 'const Tdata' type. More...
	CMap_ext_Base::operator Tdata & (void)
	Conversion operator to 'Tdata' type. More...
	CMap_ext_Base::CMap_ext_Base (const CMap_ext_Base &)
CMap_ext_Base &	CMap_ext_Base::operator= (const CMap_ext_Base &)
	CMolInfo_Base::CMolInfo_Base (void)
virtual	CMolInfo_Base::~CMolInfo_Base (void)
	CMolInfo_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CMolInfo_Base::EBiomol (void)
	Access to EBiomol's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CMolInfo_Base::ETech (void)
	Access to ETech's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CMolInfo_Base::ECompleteness (void)
	Access to ECompleteness's attributes (values, names) as defined in spec. More...
bool	CMolInfo_Base::IsSetBiomol (void) const
	Check if a value has been assigned to Biomol data member. More...
bool	CMolInfo_Base::CanGetBiomol (void) const
	Check if it is safe to call GetBiomol method. More...
void	CMolInfo_Base::ResetBiomol (void)
	Reset Biomol data member. More...
void	CMolInfo_Base::SetDefaultBiomol (void)
	Assign default value to Biomol data member. More...
TBiomol	CMolInfo_Base::GetBiomol (void) const
	Get the Biomol member data. More...
void	CMolInfo_Base::SetBiomol (TBiomol value)
	Assign a value to Biomol data member. More...
TBiomol &	CMolInfo_Base::SetBiomol (void)
	Assign a value to Biomol data member. More...
bool	CMolInfo_Base::IsSetTech (void) const
	Check if a value has been assigned to Tech data member. More...
bool	CMolInfo_Base::CanGetTech (void) const
	Check if it is safe to call GetTech method. More...
void	CMolInfo_Base::ResetTech (void)
	Reset Tech data member. More...
void	CMolInfo_Base::SetDefaultTech (void)
	Assign default value to Tech data member. More...
TTech	CMolInfo_Base::GetTech (void) const
	Get the Tech member data. More...
void	CMolInfo_Base::SetTech (TTech value)
	Assign a value to Tech data member. More...
TTech &	CMolInfo_Base::SetTech (void)
	Assign a value to Tech data member. More...
bool	CMolInfo_Base::IsSetTechexp (void) const
	explanation if tech not enough More...
bool	CMolInfo_Base::CanGetTechexp (void) const
	Check if it is safe to call GetTechexp method. More...
void	CMolInfo_Base::ResetTechexp (void)
	Reset Techexp data member. More...
const TTechexp &	CMolInfo_Base::GetTechexp (void) const
	Get the Techexp member data. More...
void	CMolInfo_Base::SetTechexp (const TTechexp &value)
	Assign a value to Techexp data member. More...
void	CMolInfo_Base::SetTechexp (TTechexp &&value)
TTechexp &	CMolInfo_Base::SetTechexp (void)
	Assign a value to Techexp data member. More...
bool	CMolInfo_Base::IsSetCompleteness (void) const
	Check if a value has been assigned to Completeness data member. More...
bool	CMolInfo_Base::CanGetCompleteness (void) const
	Check if it is safe to call GetCompleteness method. More...
void	CMolInfo_Base::ResetCompleteness (void)
	Reset Completeness data member. More...
void	CMolInfo_Base::SetDefaultCompleteness (void)
	Assign default value to Completeness data member. More...
TCompleteness	CMolInfo_Base::GetCompleteness (void) const
	Get the Completeness member data. More...
void	CMolInfo_Base::SetCompleteness (TCompleteness value)
	Assign a value to Completeness data member. More...
TCompleteness &	CMolInfo_Base::SetCompleteness (void)
	Assign a value to Completeness data member. More...
bool	CMolInfo_Base::IsSetGbmoltype (void) const
	identifies particular ncRNA Check if a value has been assigned to Gbmoltype data member. More...
bool	CMolInfo_Base::CanGetGbmoltype (void) const
	Check if it is safe to call GetGbmoltype method. More...
void	CMolInfo_Base::ResetGbmoltype (void)
	Reset Gbmoltype data member. More...
const TGbmoltype &	CMolInfo_Base::GetGbmoltype (void) const
	Get the Gbmoltype member data. More...
void	CMolInfo_Base::SetGbmoltype (const TGbmoltype &value)
	Assign a value to Gbmoltype data member. More...
void	CMolInfo_Base::SetGbmoltype (TGbmoltype &&value)
TGbmoltype &	CMolInfo_Base::SetGbmoltype (void)
	Assign a value to Gbmoltype data member. More...
virtual void	CMolInfo_Base::Reset (void)
	Reset the whole object. More...
	CMolInfo_Base::CMolInfo_Base (const CMolInfo_Base &)
CMolInfo_Base &	CMolInfo_Base::operator= (const CMolInfo_Base &)
	CNCBI2na::CNCBI2na (void)
	CNCBI2na::CNCBI2na (const std::vector< char > &value)
	Explicit constructor from the primitive type. More...
	CNCBI2na_Base::CNCBI2na_Base (void)
	CNCBI2na_Base::DECLARE_STD_ALIAS_TYPE_INFO ()
	CNCBI2na_Base::CNCBI2na_Base (const vector< char > &data)
NCBI_NS_NCBI::CNcbiOstream &	operator<< (NCBI_NS_NCBI::CNcbiOstream &str, const CNCBI2na_Base &obj)
NCBI_NS_NCBI::CNcbiIstream &	operator>> (NCBI_NS_NCBI::CNcbiIstream &str, CNCBI2na_Base &obj)
	CNCBI4na::CNCBI4na (void)
	CNCBI4na::CNCBI4na (const std::vector< char > &value)
	Explicit constructor from the primitive type. More...
	CNCBI4na_Base::CNCBI4na_Base (void)
	CNCBI4na_Base::DECLARE_STD_ALIAS_TYPE_INFO ()
	CNCBI4na_Base::CNCBI4na_Base (const vector< char > &data)
NCBI_NS_NCBI::CNcbiOstream &	operator<< (NCBI_NS_NCBI::CNcbiOstream &str, const CNCBI4na_Base &obj)
NCBI_NS_NCBI::CNcbiIstream &	operator>> (NCBI_NS_NCBI::CNcbiIstream &str, CNCBI4na_Base &obj)
	CNCBI8aa::CNCBI8aa (void)
	CNCBI8aa::CNCBI8aa (const std::vector< char > &value)
	Explicit constructor from the primitive type. More...
	CNCBI8aa_Base::CNCBI8aa_Base (void)
	CNCBI8aa_Base::DECLARE_STD_ALIAS_TYPE_INFO ()
	CNCBI8aa_Base::CNCBI8aa_Base (const vector< char > &data)
NCBI_NS_NCBI::CNcbiOstream &	operator<< (NCBI_NS_NCBI::CNcbiOstream &str, const CNCBI8aa_Base &obj)
NCBI_NS_NCBI::CNcbiIstream &	operator>> (NCBI_NS_NCBI::CNcbiIstream &str, CNCBI8aa_Base &obj)
	CNCBI8na::CNCBI8na (void)
	CNCBI8na::CNCBI8na (const std::vector< char > &value)
	Explicit constructor from the primitive type. More...
	CNCBI8na_Base::CNCBI8na_Base (void)
	CNCBI8na_Base::DECLARE_STD_ALIAS_TYPE_INFO ()
	CNCBI8na_Base::CNCBI8na_Base (const vector< char > &data)
NCBI_NS_NCBI::CNcbiOstream &	operator<< (NCBI_NS_NCBI::CNcbiOstream &str, const CNCBI8na_Base &obj)
NCBI_NS_NCBI::CNcbiIstream &	operator>> (NCBI_NS_NCBI::CNcbiIstream &str, CNCBI8na_Base &obj)
	CNCBIeaa::CNCBIeaa (void)
	CNCBIeaa::CNCBIeaa (const std::string &value)
	Explicit constructor from the primitive type. More...
	CNCBIeaa_Base::CNCBIeaa_Base (void)
	CNCBIeaa_Base::DECLARE_STD_ALIAS_TYPE_INFO ()
	CNCBIeaa_Base::CNCBIeaa_Base (const string &data)
NCBI_NS_NCBI::CNcbiOstream &	operator<< (NCBI_NS_NCBI::CNcbiOstream &str, const CNCBIeaa_Base &obj)
NCBI_NS_NCBI::CNcbiIstream &	operator>> (NCBI_NS_NCBI::CNcbiIstream &str, CNCBIeaa_Base &obj)
	CNCBIpaa::CNCBIpaa (void)
	CNCBIpaa::CNCBIpaa (const std::vector< char > &value)
	Explicit constructor from the primitive type. More...
	CNCBIpaa_Base::CNCBIpaa_Base (void)
	CNCBIpaa_Base::DECLARE_STD_ALIAS_TYPE_INFO ()
	CNCBIpaa_Base::CNCBIpaa_Base (const vector< char > &data)
NCBI_NS_NCBI::CNcbiOstream &	operator<< (NCBI_NS_NCBI::CNcbiOstream &str, const CNCBIpaa_Base &obj)
NCBI_NS_NCBI::CNcbiIstream &	operator>> (NCBI_NS_NCBI::CNcbiIstream &str, CNCBIpaa_Base &obj)
	CNCBIpna::CNCBIpna (void)
	CNCBIpna::CNCBIpna (const std::vector< char > &value)
	Explicit constructor from the primitive type. More...
	CNCBIpna_Base::CNCBIpna_Base (void)
	CNCBIpna_Base::DECLARE_STD_ALIAS_TYPE_INFO ()
	CNCBIpna_Base::CNCBIpna_Base (const vector< char > &data)
NCBI_NS_NCBI::CNcbiOstream &	operator<< (NCBI_NS_NCBI::CNcbiOstream &str, const CNCBIpna_Base &obj)
NCBI_NS_NCBI::CNcbiIstream &	operator>> (NCBI_NS_NCBI::CNcbiIstream &str, CNCBIpna_Base &obj)
	CNCBIstdaa::CNCBIstdaa (void)
	CNCBIstdaa::CNCBIstdaa (const std::vector< char > &value)
	Explicit constructor from the primitive type. More...
	CNCBIstdaa_Base::CNCBIstdaa_Base (void)
	CNCBIstdaa_Base::DECLARE_STD_ALIAS_TYPE_INFO ()
	CNCBIstdaa_Base::CNCBIstdaa_Base (const vector< char > &data)
NCBI_NS_NCBI::CNcbiOstream &	operator<< (NCBI_NS_NCBI::CNcbiOstream &str, const CNCBIstdaa_Base &obj)
NCBI_NS_NCBI::CNcbiIstream &	operator>> (NCBI_NS_NCBI::CNcbiIstream &str, CNCBIstdaa_Base &obj)
	CNum_cont::CNum_cont (void)
	CNum_cont::~CNum_cont (void)
	CNum_cont::CNum_cont (const CNum_cont &value)
CNum_cont &	CNum_cont::operator= (const CNum_cont &value)
	CNum_cont_Base::CNum_cont_Base (void)
virtual	CNum_cont_Base::~CNum_cont_Base (void)
	CNum_cont_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CNum_cont_Base::IsSetRefnum (void) const
	number assigned to first residue Check if a value has been assigned to Refnum data member. More...
bool	CNum_cont_Base::CanGetRefnum (void) const
	Check if it is safe to call GetRefnum method. More...
void	CNum_cont_Base::ResetRefnum (void)
	Reset Refnum data member. More...
void	CNum_cont_Base::SetDefaultRefnum (void)
	Assign default value to Refnum data member. More...
TRefnum	CNum_cont_Base::GetRefnum (void) const
	Get the Refnum member data. More...
void	CNum_cont_Base::SetRefnum (TRefnum value)
	Assign a value to Refnum data member. More...
TRefnum &	CNum_cont_Base::SetRefnum (void)
	Assign a value to Refnum data member. More...
bool	CNum_cont_Base::IsSetHas_zero (void) const
	0 used? Check if a value has been assigned to Has_zero data member. More...
bool	CNum_cont_Base::CanGetHas_zero (void) const
	Check if it is safe to call GetHas_zero method. More...
void	CNum_cont_Base::ResetHas_zero (void)
	Reset Has_zero data member. More...
void	CNum_cont_Base::SetDefaultHas_zero (void)
	Assign default value to Has_zero data member. More...
THas_zero	CNum_cont_Base::GetHas_zero (void) const
	Get the Has_zero member data. More...
void	CNum_cont_Base::SetHas_zero (THas_zero value)
	Assign a value to Has_zero data member. More...
THas_zero &	CNum_cont_Base::SetHas_zero (void)
	Assign a value to Has_zero data member. More...
bool	CNum_cont_Base::IsSetAscending (void) const
	ascending numbers? Check if a value has been assigned to Ascending data member. More...
bool	CNum_cont_Base::CanGetAscending (void) const
	Check if it is safe to call GetAscending method. More...
void	CNum_cont_Base::ResetAscending (void)
	Reset Ascending data member. More...
void	CNum_cont_Base::SetDefaultAscending (void)
	Assign default value to Ascending data member. More...
TAscending	CNum_cont_Base::GetAscending (void) const
	Get the Ascending member data. More...
void	CNum_cont_Base::SetAscending (TAscending value)
	Assign a value to Ascending data member. More...
TAscending &	CNum_cont_Base::SetAscending (void)
	Assign a value to Ascending data member. More...
virtual void	CNum_cont_Base::Reset (void)
	Reset the whole object. More...
	CNum_cont_Base::CNum_cont_Base (const CNum_cont_Base &)
CNum_cont_Base &	CNum_cont_Base::operator= (const CNum_cont_Base &)
	CNum_enum::CNum_enum (void)
	CNum_enum::~CNum_enum (void)
	CNum_enum::CNum_enum (const CNum_enum &value)
CNum_enum &	CNum_enum::operator= (const CNum_enum &value)
	CNum_enum_Base::CNum_enum_Base (void)
virtual	CNum_enum_Base::~CNum_enum_Base (void)
	CNum_enum_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CNum_enum_Base::IsSetNum (void) const
	number of tags to follow Check if a value has been assigned to Num data member. More...
bool	CNum_enum_Base::CanGetNum (void) const
	Check if it is safe to call GetNum method. More...
void	CNum_enum_Base::ResetNum (void)
	Reset Num data member. More...
TNum	CNum_enum_Base::GetNum (void) const
	Get the Num member data. More...
void	CNum_enum_Base::SetNum (TNum value)
	Assign a value to Num data member. More...
TNum &	CNum_enum_Base::SetNum (void)
	Assign a value to Num data member. More...
bool	CNum_enum_Base::IsSetNames (void) const
	the tags Check if a value has been assigned to Names data member. More...
bool	CNum_enum_Base::CanGetNames (void) const
	Check if it is safe to call GetNames method. More...
void	CNum_enum_Base::ResetNames (void)
	Reset Names data member. More...
const TNames &	CNum_enum_Base::GetNames (void) const
	Get the Names member data. More...
TNames &	CNum_enum_Base::SetNames (void)
	Assign a value to Names data member. More...
virtual void	CNum_enum_Base::Reset (void)
	Reset the whole object. More...
	CNum_enum_Base::CNum_enum_Base (const CNum_enum_Base &)
CNum_enum_Base &	CNum_enum_Base::operator= (const CNum_enum_Base &)
	CNum_real::CNum_real (void)
	CNum_real::~CNum_real (void)
	CNum_real::CNum_real (const CNum_real &value)
CNum_real &	CNum_real::operator= (const CNum_real &value)
	CNum_real_Base::CNum_real_Base (void)
virtual	CNum_real_Base::~CNum_real_Base (void)
	CNum_real_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CNum_real_Base::IsSetA (void) const
	from an integer system used by Bioseq Check if a value has been assigned to A data member. More...
bool	CNum_real_Base::CanGetA (void) const
	Check if it is safe to call GetA method. More...
void	CNum_real_Base::ResetA (void)
	Reset A data member. More...
TA	CNum_real_Base::GetA (void) const
	Get the A member data. More...
void	CNum_real_Base::SetA (TA value)
	Assign a value to A data member. More...
TA &	CNum_real_Base::SetA (void)
	Assign a value to A data member. More...
bool	CNum_real_Base::IsSetB (void) const
	position = (a * int_position) + b Check if a value has been assigned to B data member. More...
bool	CNum_real_Base::CanGetB (void) const
	Check if it is safe to call GetB method. More...
void	CNum_real_Base::ResetB (void)
	Reset B data member. More...
TB	CNum_real_Base::GetB (void) const
	Get the B member data. More...
void	CNum_real_Base::SetB (TB value)
	Assign a value to B data member. More...
TB &	CNum_real_Base::SetB (void)
	Assign a value to B data member. More...
bool	CNum_real_Base::IsSetUnits (void) const
	Check if a value has been assigned to Units data member. More...
bool	CNum_real_Base::CanGetUnits (void) const
	Check if it is safe to call GetUnits method. More...
void	CNum_real_Base::ResetUnits (void)
	Reset Units data member. More...
const TUnits &	CNum_real_Base::GetUnits (void) const
	Get the Units member data. More...
void	CNum_real_Base::SetUnits (const TUnits &value)
	Assign a value to Units data member. More...
void	CNum_real_Base::SetUnits (TUnits &&value)
TUnits &	CNum_real_Base::SetUnits (void)
	Assign a value to Units data member. More...
virtual void	CNum_real_Base::Reset (void)
	Reset the whole object. More...
	CNum_real_Base::CNum_real_Base (const CNum_real_Base &)
CNum_real_Base &	CNum_real_Base::operator= (const CNum_real_Base &)
	CNum_ref::CNum_ref (void)
	CNum_ref::~CNum_ref (void)
	CNum_ref::CNum_ref (const CNum_ref &value)
CNum_ref &	CNum_ref::operator= (const CNum_ref &value)
	CNum_ref_Base::CNum_ref_Base (void)
virtual	CNum_ref_Base::~CNum_ref_Base (void)
	CNum_ref_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CNum_ref_Base::EType (void)
	Access to EType's attributes (values, names) as defined in spec. More...
bool	CNum_ref_Base::IsSetType (void) const
	Check if a value has been assigned to Type data member. More...
bool	CNum_ref_Base::CanGetType (void) const
	Check if it is safe to call GetType method. More...
void	CNum_ref_Base::ResetType (void)
	Reset Type data member. More...
TType	CNum_ref_Base::GetType (void) const
	Get the Type member data. More...
void	CNum_ref_Base::SetType (TType value)
	Assign a value to Type data member. More...
TType &	CNum_ref_Base::SetType (void)
	Assign a value to Type data member. More...
bool	CNum_ref_Base::IsSetAligns (void) const
	Check if a value has been assigned to Aligns data member. More...
bool	CNum_ref_Base::CanGetAligns (void) const
	Check if it is safe to call GetAligns method. More...
void	CNum_ref_Base::ResetAligns (void)
	Reset Aligns data member. More...
const TAligns &	CNum_ref_Base::GetAligns (void) const
	Get the Aligns member data. More...
void	CNum_ref_Base::SetAligns (TAligns &value)
	Assign a value to Aligns data member. More...
TAligns &	CNum_ref_Base::SetAligns (void)
	Assign a value to Aligns data member. More...
virtual void	CNum_ref_Base::Reset (void)
	Reset the whole object. More...
	CNum_ref_Base::CNum_ref_Base (const CNum_ref_Base &)
CNum_ref_Base &	CNum_ref_Base::operator= (const CNum_ref_Base &)
	CNumbering::CNumbering (void)
	CNumbering::~CNumbering (void)
	CNumbering::CNumbering (const CNumbering &value)
CNumbering &	CNumbering::operator= (const CNumbering &value)
	CNumbering_Base::CNumbering_Base (void)
virtual	CNumbering_Base::~CNumbering_Base (void)
	CNumbering_Base::DECLARE_INTERNAL_TYPE_INFO ()
virtual void	CNumbering_Base::Reset (void)
	Reset the whole object. More...
virtual void	CNumbering_Base::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CNumbering_Base::Which (void) const
	Which variant is currently selected. More...
void	CNumbering_Base::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CNumbering_Base::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CNumbering_Base::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CNumbering_Base::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CNumbering_Base::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CNumbering_Base::IsCont (void) const
	Check if variant Cont is selected. More...
const TCont &	CNumbering_Base::GetCont (void) const
	Get the variant data. More...
TCont &	CNumbering_Base::SetCont (void)
	Select the variant. More...
void	CNumbering_Base::SetCont (TCont &value)
	Select the variant and set its data. More...
bool	CNumbering_Base::IsEnum (void) const
	Check if variant Enum is selected. More...
const TEnum &	CNumbering_Base::GetEnum (void) const
	Get the variant data. More...
TEnum &	CNumbering_Base::SetEnum (void)
	Select the variant. More...
void	CNumbering_Base::SetEnum (TEnum &value)
	Select the variant and set its data. More...
bool	CNumbering_Base::IsRef (void) const
	Check if variant Ref is selected. More...
const TRef &	CNumbering_Base::GetRef (void) const
	Get the variant data. More...
TRef &	CNumbering_Base::SetRef (void)
	Select the variant. More...
void	CNumbering_Base::SetRef (TRef &value)
	Select the variant and set its data. More...
bool	CNumbering_Base::IsReal (void) const
	Check if variant Real is selected. More...
const TReal &	CNumbering_Base::GetReal (void) const
	Get the variant data. More...
TReal &	CNumbering_Base::SetReal (void)
	Select the variant. More...
void	CNumbering_Base::SetReal (TReal &value)
	Select the variant and set its data. More...
	CNumbering_Base::CNumbering_Base (const CNumbering_Base &)
CNumbering_Base &	CNumbering_Base::operator= (const CNumbering_Base &)
void	CNumbering_Base::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
	CPubdesc_Base::CPubdesc_Base (void)
virtual	CPubdesc_Base::~CPubdesc_Base (void)
	CPubdesc_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CPubdesc_Base::EReftype (void)
	Access to EReftype's attributes (values, names) as defined in spec. More...
bool	CPubdesc_Base::IsSetPub (void) const
	the citation(s) Check if a value has been assigned to Pub data member. More...
bool	CPubdesc_Base::CanGetPub (void) const
	Check if it is safe to call GetPub method. More...
void	CPubdesc_Base::ResetPub (void)
	Reset Pub data member. More...
const TPub &	CPubdesc_Base::GetPub (void) const
	Get the Pub member data. More...
void	CPubdesc_Base::SetPub (TPub &value)
	Assign a value to Pub data member. More...
TPub &	CPubdesc_Base::SetPub (void)
	Assign a value to Pub data member. More...
bool	CPubdesc_Base::IsSetName (void) const
	name used in paper Check if a value has been assigned to Name data member. More...
bool	CPubdesc_Base::CanGetName (void) const
	Check if it is safe to call GetName method. More...
void	CPubdesc_Base::ResetName (void)
	Reset Name data member. More...
const TName &	CPubdesc_Base::GetName (void) const
	Get the Name member data. More...
void	CPubdesc_Base::SetName (const TName &value)
	Assign a value to Name data member. More...
void	CPubdesc_Base::SetName (TName &&value)
TName &	CPubdesc_Base::SetName (void)
	Assign a value to Name data member. More...
bool	CPubdesc_Base::IsSetFig (void) const
	figure in paper Check if a value has been assigned to Fig data member. More...
bool	CPubdesc_Base::CanGetFig (void) const
	Check if it is safe to call GetFig method. More...
void	CPubdesc_Base::ResetFig (void)
	Reset Fig data member. More...
const TFig &	CPubdesc_Base::GetFig (void) const
	Get the Fig member data. More...
void	CPubdesc_Base::SetFig (const TFig &value)
	Assign a value to Fig data member. More...
void	CPubdesc_Base::SetFig (TFig &&value)
TFig &	CPubdesc_Base::SetFig (void)
	Assign a value to Fig data member. More...
bool	CPubdesc_Base::IsSetNum (void) const
	numbering from paper Check if a value has been assigned to Num data member. More...
bool	CPubdesc_Base::CanGetNum (void) const
	Check if it is safe to call GetNum method. More...
void	CPubdesc_Base::ResetNum (void)
	Reset Num data member. More...
const TNum &	CPubdesc_Base::GetNum (void) const
	Get the Num member data. More...
void	CPubdesc_Base::SetNum (TNum &value)
	Assign a value to Num data member. More...
TNum &	CPubdesc_Base::SetNum (void)
	Assign a value to Num data member. More...
bool	CPubdesc_Base::IsSetNumexc (void) const
	numbering problem with paper Check if a value has been assigned to Numexc data member. More...
bool	CPubdesc_Base::CanGetNumexc (void) const
	Check if it is safe to call GetNumexc method. More...
void	CPubdesc_Base::ResetNumexc (void)
	Reset Numexc data member. More...
TNumexc	CPubdesc_Base::GetNumexc (void) const
	Get the Numexc member data. More...
void	CPubdesc_Base::SetNumexc (TNumexc value)
	Assign a value to Numexc data member. More...
TNumexc &	CPubdesc_Base::SetNumexc (void)
	Assign a value to Numexc data member. More...
bool	CPubdesc_Base::IsSetPoly_a (void) const
	poly A tail indicated in figure? Check if a value has been assigned to Poly_a data member. More...
bool	CPubdesc_Base::CanGetPoly_a (void) const
	Check if it is safe to call GetPoly_a method. More...
void	CPubdesc_Base::ResetPoly_a (void)
	Reset Poly_a data member. More...
TPoly_a	CPubdesc_Base::GetPoly_a (void) const
	Get the Poly_a member data. More...
void	CPubdesc_Base::SetPoly_a (TPoly_a value)
	Assign a value to Poly_a data member. More...
TPoly_a &	CPubdesc_Base::SetPoly_a (void)
	Assign a value to Poly_a data member. More...
bool	CPubdesc_Base::IsSetMaploc (void) const
	map location reported in paper Check if a value has been assigned to Maploc data member. More...
bool	CPubdesc_Base::CanGetMaploc (void) const
	Check if it is safe to call GetMaploc method. More...
void	CPubdesc_Base::ResetMaploc (void)
	Reset Maploc data member. More...
const TMaploc &	CPubdesc_Base::GetMaploc (void) const
	Get the Maploc member data. More...
void	CPubdesc_Base::SetMaploc (const TMaploc &value)
	Assign a value to Maploc data member. More...
void	CPubdesc_Base::SetMaploc (TMaploc &&value)
TMaploc &	CPubdesc_Base::SetMaploc (void)
	Assign a value to Maploc data member. More...
bool	CPubdesc_Base::IsSetSeq_raw (void) const
	original sequence from paper Check if a value has been assigned to Seq_raw data member. More...
bool	CPubdesc_Base::CanGetSeq_raw (void) const
	Check if it is safe to call GetSeq_raw method. More...
void	CPubdesc_Base::ResetSeq_raw (void)
	Reset Seq_raw data member. More...
const TSeq_raw &	CPubdesc_Base::GetSeq_raw (void) const
	Get the Seq_raw member data. More...
void	CPubdesc_Base::SetSeq_raw (const TSeq_raw &value)
	Assign a value to Seq_raw data member. More...
void	CPubdesc_Base::SetSeq_raw (TSeq_raw &&value)
TSeq_raw &	CPubdesc_Base::SetSeq_raw (void)
	Assign a value to Seq_raw data member. More...
bool	CPubdesc_Base::IsSetAlign_group (void) const
	this seq aligned with others in paper Check if a value has been assigned to Align_group data member. More...
bool	CPubdesc_Base::CanGetAlign_group (void) const
	Check if it is safe to call GetAlign_group method. More...
void	CPubdesc_Base::ResetAlign_group (void)
	Reset Align_group data member. More...
TAlign_group	CPubdesc_Base::GetAlign_group (void) const
	Get the Align_group member data. More...
void	CPubdesc_Base::SetAlign_group (TAlign_group value)
	Assign a value to Align_group data member. More...
TAlign_group &	CPubdesc_Base::SetAlign_group (void)
	Assign a value to Align_group data member. More...
bool	CPubdesc_Base::IsSetComment (void) const
	any comment on this pub in context Check if a value has been assigned to Comment data member. More...
bool	CPubdesc_Base::CanGetComment (void) const
	Check if it is safe to call GetComment method. More...
void	CPubdesc_Base::ResetComment (void)
	Reset Comment data member. More...
const TComment &	CPubdesc_Base::GetComment (void) const
	Get the Comment member data. More...
void	CPubdesc_Base::SetComment (const TComment &value)
	Assign a value to Comment data member. More...
void	CPubdesc_Base::SetComment (TComment &&value)
TComment &	CPubdesc_Base::SetComment (void)
	Assign a value to Comment data member. More...
bool	CPubdesc_Base::IsSetReftype (void) const
	Check if a value has been assigned to Reftype data member. More...
bool	CPubdesc_Base::CanGetReftype (void) const
	Check if it is safe to call GetReftype method. More...
void	CPubdesc_Base::ResetReftype (void)
	Reset Reftype data member. More...
void	CPubdesc_Base::SetDefaultReftype (void)
	Assign default value to Reftype data member. More...
TReftype	CPubdesc_Base::GetReftype (void) const
	Get the Reftype member data. More...
void	CPubdesc_Base::SetReftype (TReftype value)
	Assign a value to Reftype data member. More...
TReftype &	CPubdesc_Base::SetReftype (void)
	Assign a value to Reftype data member. More...
virtual void	CPubdesc_Base::Reset (void)
	Reset the whole object. More...
	CPubdesc_Base::CPubdesc_Base (const CPubdesc_Base &)
CPubdesc_Base &	CPubdesc_Base::operator= (const CPubdesc_Base &)
	CRef_ext::CRef_ext (void)
	CRef_ext_Base::CRef_ext_Base (void)
	CRef_ext_Base::DECLARE_INTERNAL_TYPE_INFO ()
const CSeq_loc &	CRef_ext_Base::Get (void) const
CSeq_loc &	CRef_ext_Base::Set (void)
	CSeg_ext::CSeg_ext (void)
	CSeg_ext::~CSeg_ext (void)
	CSeg_ext::CSeg_ext (const CSeg_ext &value)
CSeg_ext &	CSeg_ext::operator= (const CSeg_ext &value)
	CSeg_ext_Base::CSeg_ext_Base (void)
virtual	CSeg_ext_Base::~CSeg_ext_Base (void)
	CSeg_ext_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CSeg_ext_Base::IsSet (void) const
	Check if a value has been assigned to data member. More...
bool	CSeg_ext_Base::CanGet (void) const
	Check if it is safe to call Get method. More...
void	CSeg_ext_Base::Reset (void)
	Reset data member. More...
const Tdata &	CSeg_ext_Base::Get (void) const
	Get the member data. More...
Tdata &	CSeg_ext_Base::Set (void)
	Assign a value to data member. More...
	CSeg_ext_Base::operator const Tdata & (void) const
	Conversion operator to 'const Tdata' type. More...
	CSeg_ext_Base::operator Tdata & (void)
	Conversion operator to 'Tdata' type. More...
	CSeg_ext_Base::CSeg_ext_Base (const CSeg_ext_Base &)
CSeg_ext_Base &	CSeg_ext_Base::operator= (const CSeg_ext_Base &)
	CSeq_annot_Base::CSeq_annot_Base (void)
virtual	CSeq_annot_Base::~CSeq_annot_Base (void)
	CSeq_annot_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CSeq_annot_Base::EDb (void)
	Access to EDb's attributes (values, names) as defined in spec. More...
	CSeq_annot_Base::C_Data::C_Data (void)
	CSeq_annot_Base::C_Data::~C_Data (void)
	CSeq_annot_Base::C_Data::DECLARE_INTERNAL_TYPE_INFO ()
void	CSeq_annot_Base::C_Data::Reset (void)
	Reset the whole object. More...
void	CSeq_annot_Base::C_Data::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CSeq_annot_Base::C_Data::Which (void) const
	Which variant is currently selected. More...
void	CSeq_annot_Base::C_Data::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CSeq_annot_Base::C_Data::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CSeq_annot_Base::C_Data::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CSeq_annot_Base::C_Data::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CSeq_annot_Base::C_Data::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CSeq_annot_Base::C_Data::IsFtable (void) const
	Check if variant Ftable is selected. More...
const TFtable &	CSeq_annot_Base::C_Data::GetFtable (void) const
	Get the variant data. More...
TFtable &	CSeq_annot_Base::C_Data::SetFtable (void)
	Select the variant. More...
bool	CSeq_annot_Base::C_Data::IsAlign (void) const
	Check if variant Align is selected. More...
const TAlign &	CSeq_annot_Base::C_Data::GetAlign (void) const
	Get the variant data. More...
TAlign &	CSeq_annot_Base::C_Data::SetAlign (void)
	Select the variant. More...
bool	CSeq_annot_Base::C_Data::IsGraph (void) const
	Check if variant Graph is selected. More...
const TGraph &	CSeq_annot_Base::C_Data::GetGraph (void) const
	Get the variant data. More...
TGraph &	CSeq_annot_Base::C_Data::SetGraph (void)
	Select the variant. More...
bool	CSeq_annot_Base::C_Data::IsIds (void) const
	Check if variant Ids is selected. More...
const TIds &	CSeq_annot_Base::C_Data::GetIds (void) const
	Get the variant data. More...
TIds &	CSeq_annot_Base::C_Data::SetIds (void)
	Select the variant. More...
bool	CSeq_annot_Base::C_Data::IsLocs (void) const
	Check if variant Locs is selected. More...
const TLocs &	CSeq_annot_Base::C_Data::GetLocs (void) const
	Get the variant data. More...
TLocs &	CSeq_annot_Base::C_Data::SetLocs (void)
	Select the variant. More...
bool	CSeq_annot_Base::C_Data::IsSeq_table (void) const
	Check if variant Seq_table is selected. More...
const TSeq_table &	CSeq_annot_Base::C_Data::GetSeq_table (void) const
	Get the variant data. More...
TSeq_table &	CSeq_annot_Base::C_Data::SetSeq_table (void)
	Select the variant. More...
void	CSeq_annot_Base::C_Data::SetSeq_table (TSeq_table &value)
	Select the variant and set its data. More...
	CSeq_annot_Base::C_Data::C_Data (const C_Data &)
C_Data &	CSeq_annot_Base::C_Data::operator= (const C_Data &)
void	CSeq_annot_Base::C_Data::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
bool	CSeq_annot_Base::IsSetId (void) const
	Check if a value has been assigned to Id data member. More...
bool	CSeq_annot_Base::CanGetId (void) const
	Check if it is safe to call GetId method. More...
void	CSeq_annot_Base::ResetId (void)
	Reset Id data member. More...
const TId &	CSeq_annot_Base::GetId (void) const
	Get the Id member data. More...
TId &	CSeq_annot_Base::SetId (void)
	Assign a value to Id data member. More...
bool	CSeq_annot_Base::IsSetDb (void) const
	Check if a value has been assigned to Db data member. More...
bool	CSeq_annot_Base::CanGetDb (void) const
	Check if it is safe to call GetDb method. More...
void	CSeq_annot_Base::ResetDb (void)
	Reset Db data member. More...
TDb	CSeq_annot_Base::GetDb (void) const
	Get the Db member data. More...
void	CSeq_annot_Base::SetDb (TDb value)
	Assign a value to Db data member. More...
TDb &	CSeq_annot_Base::SetDb (void)
	Assign a value to Db data member. More...
bool	CSeq_annot_Base::IsSetName (void) const
	source if "other" above Check if a value has been assigned to Name data member. More...
bool	CSeq_annot_Base::CanGetName (void) const
	Check if it is safe to call GetName method. More...
void	CSeq_annot_Base::ResetName (void)
	Reset Name data member. More...
const TName &	CSeq_annot_Base::GetName (void) const
	Get the Name member data. More...
void	CSeq_annot_Base::SetName (const TName &value)
	Assign a value to Name data member. More...
void	CSeq_annot_Base::SetName (TName &&value)
TName &	CSeq_annot_Base::SetName (void)
	Assign a value to Name data member. More...
bool	CSeq_annot_Base::IsSetDesc (void) const
	used only for stand alone Seq-annots Check if a value has been assigned to Desc data member. More...
bool	CSeq_annot_Base::CanGetDesc (void) const
	Check if it is safe to call GetDesc method. More...
void	CSeq_annot_Base::ResetDesc (void)
	Reset Desc data member. More...
const TDesc &	CSeq_annot_Base::GetDesc (void) const
	Get the Desc member data. More...
void	CSeq_annot_Base::SetDesc (TDesc &value)
	Assign a value to Desc data member. More...
TDesc &	CSeq_annot_Base::SetDesc (void)
	Assign a value to Desc data member. More...
bool	CSeq_annot_Base::IsSetData (void) const
	Check if a value has been assigned to Data data member. More...
bool	CSeq_annot_Base::CanGetData (void) const
	Check if it is safe to call GetData method. More...
void	CSeq_annot_Base::ResetData (void)
	Reset Data data member. More...
const TData &	CSeq_annot_Base::GetData (void) const
	Get the Data member data. More...
void	CSeq_annot_Base::SetData (TData &value)
	Assign a value to Data data member. More...
TData &	CSeq_annot_Base::SetData (void)
	Assign a value to Data data member. More...
virtual void	CSeq_annot_Base::Reset (void)
	Reset the whole object. More...
	CSeq_annot_Base::CSeq_annot_Base (const CSeq_annot_Base &)
CSeq_annot_Base &	CSeq_annot_Base::operator= (const CSeq_annot_Base &)
	CSeq_data_Base::CSeq_data_Base (void)
virtual	CSeq_data_Base::~CSeq_data_Base (void)
	CSeq_data_Base::DECLARE_INTERNAL_TYPE_INFO ()
virtual void	CSeq_data_Base::Reset (void)
	Reset the whole object. More...
virtual void	CSeq_data_Base::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CSeq_data_Base::Which (void) const
	Which variant is currently selected. More...
void	CSeq_data_Base::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CSeq_data_Base::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CSeq_data_Base::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CSeq_data_Base::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CSeq_data_Base::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CSeq_data_Base::IsIupacna (void) const
	Check if variant Iupacna is selected. More...
const TIupacna &	CSeq_data_Base::GetIupacna (void) const
	Get the variant data. More...
TIupacna &	CSeq_data_Base::SetIupacna (void)
	Select the variant. More...
void	CSeq_data_Base::SetIupacna (const TIupacna &value)
	Select the variant and set its data. More...
bool	CSeq_data_Base::IsIupacaa (void) const
	Check if variant Iupacaa is selected. More...
const TIupacaa &	CSeq_data_Base::GetIupacaa (void) const
	Get the variant data. More...
TIupacaa &	CSeq_data_Base::SetIupacaa (void)
	Select the variant. More...
void	CSeq_data_Base::SetIupacaa (const TIupacaa &value)
	Select the variant and set its data. More...
bool	CSeq_data_Base::IsNcbi2na (void) const
	Check if variant Ncbi2na is selected. More...
const TNcbi2na &	CSeq_data_Base::GetNcbi2na (void) const
	Get the variant data. More...
TNcbi2na &	CSeq_data_Base::SetNcbi2na (void)
	Select the variant. More...
bool	CSeq_data_Base::IsNcbi4na (void) const
	Check if variant Ncbi4na is selected. More...
const TNcbi4na &	CSeq_data_Base::GetNcbi4na (void) const
	Get the variant data. More...
TNcbi4na &	CSeq_data_Base::SetNcbi4na (void)
	Select the variant. More...
bool	CSeq_data_Base::IsNcbi8na (void) const
	Check if variant Ncbi8na is selected. More...
const TNcbi8na &	CSeq_data_Base::GetNcbi8na (void) const
	Get the variant data. More...
TNcbi8na &	CSeq_data_Base::SetNcbi8na (void)
	Select the variant. More...
bool	CSeq_data_Base::IsNcbipna (void) const
	Check if variant Ncbipna is selected. More...
const TNcbipna &	CSeq_data_Base::GetNcbipna (void) const
	Get the variant data. More...
TNcbipna &	CSeq_data_Base::SetNcbipna (void)
	Select the variant. More...
bool	CSeq_data_Base::IsNcbi8aa (void) const
	Check if variant Ncbi8aa is selected. More...
const TNcbi8aa &	CSeq_data_Base::GetNcbi8aa (void) const
	Get the variant data. More...
TNcbi8aa &	CSeq_data_Base::SetNcbi8aa (void)
	Select the variant. More...
bool	CSeq_data_Base::IsNcbieaa (void) const
	Check if variant Ncbieaa is selected. More...
const TNcbieaa &	CSeq_data_Base::GetNcbieaa (void) const
	Get the variant data. More...
TNcbieaa &	CSeq_data_Base::SetNcbieaa (void)
	Select the variant. More...
void	CSeq_data_Base::SetNcbieaa (const TNcbieaa &value)
	Select the variant and set its data. More...
bool	CSeq_data_Base::IsNcbipaa (void) const
	Check if variant Ncbipaa is selected. More...
const TNcbipaa &	CSeq_data_Base::GetNcbipaa (void) const
	Get the variant data. More...
TNcbipaa &	CSeq_data_Base::SetNcbipaa (void)
	Select the variant. More...
bool	CSeq_data_Base::IsNcbistdaa (void) const
	Check if variant Ncbistdaa is selected. More...
const TNcbistdaa &	CSeq_data_Base::GetNcbistdaa (void) const
	Get the variant data. More...
TNcbistdaa &	CSeq_data_Base::SetNcbistdaa (void)
	Select the variant. More...
bool	CSeq_data_Base::IsGap (void) const
	Check if variant Gap is selected. More...
const TGap &	CSeq_data_Base::GetGap (void) const
	Get the variant data. More...
TGap &	CSeq_data_Base::SetGap (void)
	Select the variant. More...
void	CSeq_data_Base::SetGap (TGap &value)
	Select the variant and set its data. More...
	CSeq_data_Base::CSeq_data_Base (const CSeq_data_Base &)
CSeq_data_Base &	CSeq_data_Base::operator= (const CSeq_data_Base &)
void	CSeq_data_Base::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
	CSeq_descr_Base::CSeq_descr_Base (void)
virtual	CSeq_descr_Base::~CSeq_descr_Base (void)
	CSeq_descr_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CSeq_descr_Base::IsSet (void) const
	Check if a value has been assigned to data member. More...
bool	CSeq_descr_Base::CanGet (void) const
	Check if it is safe to call Get method. More...
void	CSeq_descr_Base::Reset (void)
	Reset data member. More...
const Tdata &	CSeq_descr_Base::Get (void) const
	Get the member data. More...
Tdata &	CSeq_descr_Base::Set (void)
	Assign a value to data member. More...
	CSeq_descr_Base::operator const Tdata & (void) const
	Conversion operator to 'const Tdata' type. More...
	CSeq_descr_Base::operator Tdata & (void)
	Conversion operator to 'Tdata' type. More...
	CSeq_descr_Base::CSeq_descr_Base (const CSeq_descr_Base &)
CSeq_descr_Base &	CSeq_descr_Base::operator= (const CSeq_descr_Base &)
	CSeq_ext::CSeq_ext (void)
	CSeq_ext::~CSeq_ext (void)
	CSeq_ext::CSeq_ext (const CSeq_ext &value)
CSeq_ext &	CSeq_ext::operator= (const CSeq_ext &value)
	CSeq_ext_Base::CSeq_ext_Base (void)
virtual	CSeq_ext_Base::~CSeq_ext_Base (void)
	CSeq_ext_Base::DECLARE_INTERNAL_TYPE_INFO ()
virtual void	CSeq_ext_Base::Reset (void)
	Reset the whole object. More...
virtual void	CSeq_ext_Base::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CSeq_ext_Base::Which (void) const
	Which variant is currently selected. More...
void	CSeq_ext_Base::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CSeq_ext_Base::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CSeq_ext_Base::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CSeq_ext_Base::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CSeq_ext_Base::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CSeq_ext_Base::IsSeg (void) const
	Check if variant Seg is selected. More...
const TSeg &	CSeq_ext_Base::GetSeg (void) const
	Get the variant data. More...
TSeg &	CSeq_ext_Base::SetSeg (void)
	Select the variant. More...
void	CSeq_ext_Base::SetSeg (TSeg &value)
	Select the variant and set its data. More...
bool	CSeq_ext_Base::IsRef (void) const
	Check if variant Ref is selected. More...
const TRef &	CSeq_ext_Base::GetRef (void) const
	Get the variant data. More...
TRef &	CSeq_ext_Base::SetRef (void)
	Select the variant. More...
void	CSeq_ext_Base::SetRef (TRef &value)
	Select the variant and set its data. More...
bool	CSeq_ext_Base::IsMap (void) const
	Check if variant Map is selected. More...
const TMap &	CSeq_ext_Base::GetMap (void) const
	Get the variant data. More...
TMap &	CSeq_ext_Base::SetMap (void)
	Select the variant. More...
void	CSeq_ext_Base::SetMap (TMap &value)
	Select the variant and set its data. More...
bool	CSeq_ext_Base::IsDelta (void) const
	Check if variant Delta is selected. More...
const TDelta &	CSeq_ext_Base::GetDelta (void) const
	Get the variant data. More...
TDelta &	CSeq_ext_Base::SetDelta (void)
	Select the variant. More...
void	CSeq_ext_Base::SetDelta (TDelta &value)
	Select the variant and set its data. More...
	CSeq_ext_Base::CSeq_ext_Base (const CSeq_ext_Base &)
CSeq_ext_Base &	CSeq_ext_Base::operator= (const CSeq_ext_Base &)
void	CSeq_ext_Base::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
	CSeq_gap_Base::CSeq_gap_Base (void)
virtual	CSeq_gap_Base::~CSeq_gap_Base (void)
	CSeq_gap_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CSeq_gap_Base::EType (void)
	Access to EType's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CSeq_gap_Base::ELinkage (void)
	Access to ELinkage's attributes (values, names) as defined in spec. More...
bool	CSeq_gap_Base::IsSetType (void) const
	Check if a value has been assigned to Type data member. More...
bool	CSeq_gap_Base::CanGetType (void) const
	Check if it is safe to call GetType method. More...
void	CSeq_gap_Base::ResetType (void)
	Reset Type data member. More...
TType	CSeq_gap_Base::GetType (void) const
	Get the Type member data. More...
void	CSeq_gap_Base::SetType (TType value)
	Assign a value to Type data member. More...
TType &	CSeq_gap_Base::SetType (void)
	Assign a value to Type data member. More...
bool	CSeq_gap_Base::IsSetLinkage (void) const
	Check if a value has been assigned to Linkage data member. More...
bool	CSeq_gap_Base::CanGetLinkage (void) const
	Check if it is safe to call GetLinkage method. More...
void	CSeq_gap_Base::ResetLinkage (void)
	Reset Linkage data member. More...
TLinkage	CSeq_gap_Base::GetLinkage (void) const
	Get the Linkage member data. More...
void	CSeq_gap_Base::SetLinkage (TLinkage value)
	Assign a value to Linkage data member. More...
TLinkage &	CSeq_gap_Base::SetLinkage (void)
	Assign a value to Linkage data member. More...
bool	CSeq_gap_Base::IsSetLinkage_evidence (void) const
	Check if a value has been assigned to Linkage_evidence data member. More...
bool	CSeq_gap_Base::CanGetLinkage_evidence (void) const
	Check if it is safe to call GetLinkage_evidence method. More...
void	CSeq_gap_Base::ResetLinkage_evidence (void)
	Reset Linkage_evidence data member. More...
const TLinkage_evidence &	CSeq_gap_Base::GetLinkage_evidence (void) const
	Get the Linkage_evidence member data. More...
TLinkage_evidence &	CSeq_gap_Base::SetLinkage_evidence (void)
	Assign a value to Linkage_evidence data member. More...
virtual void	CSeq_gap_Base::Reset (void)
	Reset the whole object. More...
	CSeq_gap_Base::CSeq_gap_Base (const CSeq_gap_Base &)
CSeq_gap_Base &	CSeq_gap_Base::operator= (const CSeq_gap_Base &)
	CSeq_hist::CSeq_hist (void)
	CSeq_hist::~CSeq_hist (void)
	CSeq_hist::CSeq_hist (const CSeq_hist &value)
CSeq_hist &	CSeq_hist::operator= (const CSeq_hist &value)
	CSeq_hist_Base::CSeq_hist_Base (void)
virtual	CSeq_hist_Base::~CSeq_hist_Base (void)
	CSeq_hist_Base::DECLARE_INTERNAL_TYPE_INFO ()
	CSeq_hist_Base::C_Deleted::C_Deleted (void)
	CSeq_hist_Base::C_Deleted::~C_Deleted (void)
	CSeq_hist_Base::C_Deleted::DECLARE_INTERNAL_TYPE_INFO ()
void	CSeq_hist_Base::C_Deleted::Reset (void)
	Reset the whole object. More...
void	CSeq_hist_Base::C_Deleted::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CSeq_hist_Base::C_Deleted::Which (void) const
	Which variant is currently selected. More...
void	CSeq_hist_Base::C_Deleted::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CSeq_hist_Base::C_Deleted::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CSeq_hist_Base::C_Deleted::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CSeq_hist_Base::C_Deleted::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CSeq_hist_Base::C_Deleted::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CSeq_hist_Base::C_Deleted::IsBool (void) const
	Check if variant Bool is selected. More...
TBool	CSeq_hist_Base::C_Deleted::GetBool (void) const
	Get the variant data. More...
TBool &	CSeq_hist_Base::C_Deleted::SetBool (void)
	Select the variant. More...
void	CSeq_hist_Base::C_Deleted::SetBool (TBool value)
	Select the variant and set its data. More...
bool	CSeq_hist_Base::C_Deleted::IsDate (void) const
	Check if variant Date is selected. More...
const TDate &	CSeq_hist_Base::C_Deleted::GetDate (void) const
	Get the variant data. More...
TDate &	CSeq_hist_Base::C_Deleted::SetDate (void)
	Select the variant. More...
void	CSeq_hist_Base::C_Deleted::SetDate (TDate &value)
	Select the variant and set its data. More...
	CSeq_hist_Base::C_Deleted::C_Deleted (const C_Deleted &)
C_Deleted &	CSeq_hist_Base::C_Deleted::operator= (const C_Deleted &)
void	CSeq_hist_Base::C_Deleted::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
bool	CSeq_hist_Base::IsSetAssembly (void) const
	how was this assembled? Check if a value has been assigned to Assembly data member. More...
bool	CSeq_hist_Base::CanGetAssembly (void) const
	Check if it is safe to call GetAssembly method. More...
void	CSeq_hist_Base::ResetAssembly (void)
	Reset Assembly data member. More...
const TAssembly &	CSeq_hist_Base::GetAssembly (void) const
	Get the Assembly member data. More...
TAssembly &	CSeq_hist_Base::SetAssembly (void)
	Assign a value to Assembly data member. More...
bool	CSeq_hist_Base::IsSetReplaces (void) const
	seq makes these seqs obsolete Check if a value has been assigned to Replaces data member. More...
bool	CSeq_hist_Base::CanGetReplaces (void) const
	Check if it is safe to call GetReplaces method. More...
void	CSeq_hist_Base::ResetReplaces (void)
	Reset Replaces data member. More...
const TReplaces &	CSeq_hist_Base::GetReplaces (void) const
	Get the Replaces member data. More...
void	CSeq_hist_Base::SetReplaces (TReplaces &value)
	Assign a value to Replaces data member. More...
TReplaces &	CSeq_hist_Base::SetReplaces (void)
	Assign a value to Replaces data member. More...
bool	CSeq_hist_Base::IsSetReplaced_by (void) const
	these seqs make this one obsolete Check if a value has been assigned to Replaced_by data member. More...
bool	CSeq_hist_Base::CanGetReplaced_by (void) const
	Check if it is safe to call GetReplaced_by method. More...
void	CSeq_hist_Base::ResetReplaced_by (void)
	Reset Replaced_by data member. More...
const TReplaced_by &	CSeq_hist_Base::GetReplaced_by (void) const
	Get the Replaced_by member data. More...
void	CSeq_hist_Base::SetReplaced_by (TReplaced_by &value)
	Assign a value to Replaced_by data member. More...
TReplaced_by &	CSeq_hist_Base::SetReplaced_by (void)
	Assign a value to Replaced_by data member. More...
bool	CSeq_hist_Base::IsSetDeleted (void) const
	Check if a value has been assigned to Deleted data member. More...
bool	CSeq_hist_Base::CanGetDeleted (void) const
	Check if it is safe to call GetDeleted method. More...
void	CSeq_hist_Base::ResetDeleted (void)
	Reset Deleted data member. More...
const TDeleted &	CSeq_hist_Base::GetDeleted (void) const
	Get the Deleted member data. More...
void	CSeq_hist_Base::SetDeleted (TDeleted &value)
	Assign a value to Deleted data member. More...
TDeleted &	CSeq_hist_Base::SetDeleted (void)
	Assign a value to Deleted data member. More...
virtual void	CSeq_hist_Base::Reset (void)
	Reset the whole object. More...
	CSeq_hist_Base::CSeq_hist_Base (const CSeq_hist_Base &)
CSeq_hist_Base &	CSeq_hist_Base::operator= (const CSeq_hist_Base &)
	CSeq_hist_rec::CSeq_hist_rec (void)
	CSeq_hist_rec::~CSeq_hist_rec (void)
	CSeq_hist_rec::CSeq_hist_rec (const CSeq_hist_rec &value)
CSeq_hist_rec &	CSeq_hist_rec::operator= (const CSeq_hist_rec &value)
	CSeq_hist_rec_Base::CSeq_hist_rec_Base (void)
virtual	CSeq_hist_rec_Base::~CSeq_hist_rec_Base (void)
	CSeq_hist_rec_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CSeq_hist_rec_Base::IsSetDate (void) const
	Check if a value has been assigned to Date data member. More...
bool	CSeq_hist_rec_Base::CanGetDate (void) const
	Check if it is safe to call GetDate method. More...
void	CSeq_hist_rec_Base::ResetDate (void)
	Reset Date data member. More...
const TDate &	CSeq_hist_rec_Base::GetDate (void) const
	Get the Date member data. More...
void	CSeq_hist_rec_Base::SetDate (TDate &value)
	Assign a value to Date data member. More...
TDate &	CSeq_hist_rec_Base::SetDate (void)
	Assign a value to Date data member. More...
bool	CSeq_hist_rec_Base::IsSetIds (void) const
	Check if a value has been assigned to Ids data member. More...
bool	CSeq_hist_rec_Base::CanGetIds (void) const
	Check if it is safe to call GetIds method. More...
void	CSeq_hist_rec_Base::ResetIds (void)
	Reset Ids data member. More...
const TIds &	CSeq_hist_rec_Base::GetIds (void) const
	Get the Ids member data. More...
TIds &	CSeq_hist_rec_Base::SetIds (void)
	Assign a value to Ids data member. More...
virtual void	CSeq_hist_rec_Base::Reset (void)
	Reset the whole object. More...
	CSeq_hist_rec_Base::CSeq_hist_rec_Base (const CSeq_hist_rec_Base &)
CSeq_hist_rec_Base &	CSeq_hist_rec_Base::operator= (const CSeq_hist_rec_Base &)
	CSeq_inst_Base::CSeq_inst_Base (void)
virtual	CSeq_inst_Base::~CSeq_inst_Base (void)
	CSeq_inst_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CSeq_inst_Base::ERepr (void)
	Access to ERepr's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CSeq_inst_Base::EMol (void)
	Access to EMol's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CSeq_inst_Base::ETopology (void)
	Access to ETopology's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CSeq_inst_Base::EStrand (void)
	Access to EStrand's attributes (values, names) as defined in spec. More...
bool	CSeq_inst_Base::IsSetRepr (void) const
	Check if a value has been assigned to Repr data member. More...
bool	CSeq_inst_Base::CanGetRepr (void) const
	Check if it is safe to call GetRepr method. More...
void	CSeq_inst_Base::ResetRepr (void)
	Reset Repr data member. More...
TRepr	CSeq_inst_Base::GetRepr (void) const
	Get the Repr member data. More...
void	CSeq_inst_Base::SetRepr (TRepr value)
	Assign a value to Repr data member. More...
TRepr &	CSeq_inst_Base::SetRepr (void)
	Assign a value to Repr data member. More...
bool	CSeq_inst_Base::IsSetMol (void) const
	Check if a value has been assigned to Mol data member. More...
bool	CSeq_inst_Base::CanGetMol (void) const
	Check if it is safe to call GetMol method. More...
void	CSeq_inst_Base::ResetMol (void)
	Reset Mol data member. More...
TMol	CSeq_inst_Base::GetMol (void) const
	Get the Mol member data. More...
void	CSeq_inst_Base::SetMol (TMol value)
	Assign a value to Mol data member. More...
TMol &	CSeq_inst_Base::SetMol (void)
	Assign a value to Mol data member. More...
bool	CSeq_inst_Base::IsSetLength (void) const
	length of sequence in residues Check if a value has been assigned to Length data member. More...
bool	CSeq_inst_Base::CanGetLength (void) const
	Check if it is safe to call GetLength method. More...
void	CSeq_inst_Base::ResetLength (void)
	Reset Length data member. More...
TLength	CSeq_inst_Base::GetLength (void) const
	Get the Length member data. More...
void	CSeq_inst_Base::SetLength (TLength value)
	Assign a value to Length data member. More...
TLength &	CSeq_inst_Base::SetLength (void)
	Assign a value to Length data member. More...
bool	CSeq_inst_Base::IsSetFuzz (void) const
	length uncertainty Check if a value has been assigned to Fuzz data member. More...
bool	CSeq_inst_Base::CanGetFuzz (void) const
	Check if it is safe to call GetFuzz method. More...
void	CSeq_inst_Base::ResetFuzz (void)
	Reset Fuzz data member. More...
const TFuzz &	CSeq_inst_Base::GetFuzz (void) const
	Get the Fuzz member data. More...
void	CSeq_inst_Base::SetFuzz (TFuzz &value)
	Assign a value to Fuzz data member. More...
TFuzz &	CSeq_inst_Base::SetFuzz (void)
	Assign a value to Fuzz data member. More...
bool	CSeq_inst_Base::IsSetTopology (void) const
	Check if a value has been assigned to Topology data member. More...
bool	CSeq_inst_Base::CanGetTopology (void) const
	Check if it is safe to call GetTopology method. More...
void	CSeq_inst_Base::ResetTopology (void)
	Reset Topology data member. More...
void	CSeq_inst_Base::SetDefaultTopology (void)
	Assign default value to Topology data member. More...
TTopology	CSeq_inst_Base::GetTopology (void) const
	Get the Topology member data. More...
void	CSeq_inst_Base::SetTopology (TTopology value)
	Assign a value to Topology data member. More...
TTopology &	CSeq_inst_Base::SetTopology (void)
	Assign a value to Topology data member. More...
bool	CSeq_inst_Base::IsSetStrand (void) const
	Check if a value has been assigned to Strand data member. More...
bool	CSeq_inst_Base::CanGetStrand (void) const
	Check if it is safe to call GetStrand method. More...
void	CSeq_inst_Base::ResetStrand (void)
	Reset Strand data member. More...
TStrand	CSeq_inst_Base::GetStrand (void) const
	Get the Strand member data. More...
void	CSeq_inst_Base::SetStrand (TStrand value)
	Assign a value to Strand data member. More...
TStrand &	CSeq_inst_Base::SetStrand (void)
	Assign a value to Strand data member. More...
bool	CSeq_inst_Base::IsSetSeq_data (void) const
	the sequence Check if a value has been assigned to Seq_data data member. More...
bool	CSeq_inst_Base::CanGetSeq_data (void) const
	Check if it is safe to call GetSeq_data method. More...
void	CSeq_inst_Base::ResetSeq_data (void)
	Reset Seq_data data member. More...
const TSeq_data &	CSeq_inst_Base::GetSeq_data (void) const
	Get the Seq_data member data. More...
void	CSeq_inst_Base::SetSeq_data (TSeq_data &value)
	Assign a value to Seq_data data member. More...
TSeq_data &	CSeq_inst_Base::SetSeq_data (void)
	Assign a value to Seq_data data member. More...
bool	CSeq_inst_Base::IsSetExt (void) const
	extensions for special types Check if a value has been assigned to Ext data member. More...
bool	CSeq_inst_Base::CanGetExt (void) const
	Check if it is safe to call GetExt method. More...
void	CSeq_inst_Base::ResetExt (void)
	Reset Ext data member. More...
const TExt &	CSeq_inst_Base::GetExt (void) const
	Get the Ext member data. More...
void	CSeq_inst_Base::SetExt (TExt &value)
	Assign a value to Ext data member. More...
TExt &	CSeq_inst_Base::SetExt (void)
	Assign a value to Ext data member. More...
bool	CSeq_inst_Base::IsSetHist (void) const
	sequence history Check if a value has been assigned to Hist data member. More...
bool	CSeq_inst_Base::CanGetHist (void) const
	Check if it is safe to call GetHist method. More...
void	CSeq_inst_Base::ResetHist (void)
	Reset Hist data member. More...
const THist &	CSeq_inst_Base::GetHist (void) const
	Get the Hist member data. More...
void	CSeq_inst_Base::SetHist (THist &value)
	Assign a value to Hist data member. More...
THist &	CSeq_inst_Base::SetHist (void)
	Assign a value to Hist data member. More...
virtual void	CSeq_inst_Base::Reset (void)
	Reset the whole object. More...
	CSeq_inst_Base::CSeq_inst_Base (const CSeq_inst_Base &)
CSeq_inst_Base &	CSeq_inst_Base::operator= (const CSeq_inst_Base &)
	CSeq_literal_Base::CSeq_literal_Base (void)
virtual	CSeq_literal_Base::~CSeq_literal_Base (void)
	CSeq_literal_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CSeq_literal_Base::IsSetLength (void) const
	must give a length in residues Check if a value has been assigned to Length data member. More...
bool	CSeq_literal_Base::CanGetLength (void) const
	Check if it is safe to call GetLength method. More...
void	CSeq_literal_Base::ResetLength (void)
	Reset Length data member. More...
TLength	CSeq_literal_Base::GetLength (void) const
	Get the Length member data. More...
void	CSeq_literal_Base::SetLength (TLength value)
	Assign a value to Length data member. More...
TLength &	CSeq_literal_Base::SetLength (void)
	Assign a value to Length data member. More...
bool	CSeq_literal_Base::IsSetFuzz (void) const
	could be unsure Check if a value has been assigned to Fuzz data member. More...
bool	CSeq_literal_Base::CanGetFuzz (void) const
	Check if it is safe to call GetFuzz method. More...
void	CSeq_literal_Base::ResetFuzz (void)
	Reset Fuzz data member. More...
const TFuzz &	CSeq_literal_Base::GetFuzz (void) const
	Get the Fuzz member data. More...
void	CSeq_literal_Base::SetFuzz (TFuzz &value)
	Assign a value to Fuzz data member. More...
TFuzz &	CSeq_literal_Base::SetFuzz (void)
	Assign a value to Fuzz data member. More...
bool	CSeq_literal_Base::IsSetSeq_data (void) const
	may have the data Check if a value has been assigned to Seq_data data member. More...
bool	CSeq_literal_Base::CanGetSeq_data (void) const
	Check if it is safe to call GetSeq_data method. More...
void	CSeq_literal_Base::ResetSeq_data (void)
	Reset Seq_data data member. More...
const TSeq_data &	CSeq_literal_Base::GetSeq_data (void) const
	Get the Seq_data member data. More...
void	CSeq_literal_Base::SetSeq_data (TSeq_data &value)
	Assign a value to Seq_data data member. More...
TSeq_data &	CSeq_literal_Base::SetSeq_data (void)
	Assign a value to Seq_data data member. More...
virtual void	CSeq_literal_Base::Reset (void)
	Reset the whole object. More...
	CSeq_literal_Base::CSeq_literal_Base (const CSeq_literal_Base &)
CSeq_literal_Base &	CSeq_literal_Base::operator= (const CSeq_literal_Base &)
	CSeqdesc_Base::CSeqdesc_Base (void)
virtual	CSeqdesc_Base::~CSeqdesc_Base (void)
	CSeqdesc_Base::DECLARE_INTERNAL_TYPE_INFO ()
virtual void	CSeqdesc_Base::Reset (void)
	Reset the whole object. More...
virtual void	CSeqdesc_Base::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CSeqdesc_Base::Which (void) const
	Which variant is currently selected. More...
void	CSeqdesc_Base::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CSeqdesc_Base::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CSeqdesc_Base::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CSeqdesc_Base::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CSeqdesc_Base::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CSeqdesc_Base::IsMol_type (void) const
	Check if variant Mol_type is selected. More...
TMol_type	CSeqdesc_Base::GetMol_type (void) const
	Get the variant data. More...
TMol_type &	CSeqdesc_Base::SetMol_type (void)
	Select the variant. More...
void	CSeqdesc_Base::SetMol_type (TMol_type value)
	Select the variant and set its data. More...
bool	CSeqdesc_Base::IsModif (void) const
	Check if variant Modif is selected. More...
const TModif &	CSeqdesc_Base::GetModif (void) const
	Get the variant data. More...
TModif &	CSeqdesc_Base::SetModif (void)
	Select the variant. More...
bool	CSeqdesc_Base::IsMethod (void) const
	Check if variant Method is selected. More...
TMethod	CSeqdesc_Base::GetMethod (void) const
	Get the variant data. More...
TMethod &	CSeqdesc_Base::SetMethod (void)
	Select the variant. More...
void	CSeqdesc_Base::SetMethod (TMethod value)
	Select the variant and set its data. More...
bool	CSeqdesc_Base::IsName (void) const
	Check if variant Name is selected. More...
const TName &	CSeqdesc_Base::GetName (void) const
	Get the variant data. More...
TName &	CSeqdesc_Base::SetName (void)
	Select the variant. More...
void	CSeqdesc_Base::SetName (const TName &value)
	Select the variant and set its data. More...
bool	CSeqdesc_Base::IsTitle (void) const
	Check if variant Title is selected. More...
const TTitle &	CSeqdesc_Base::GetTitle (void) const
	Get the variant data. More...
TTitle &	CSeqdesc_Base::SetTitle (void)
	Select the variant. More...
void	CSeqdesc_Base::SetTitle (const TTitle &value)
	Select the variant and set its data. More...
bool	CSeqdesc_Base::IsOrg (void) const
	Check if variant Org is selected. More...
const TOrg &	CSeqdesc_Base::GetOrg (void) const
	Get the variant data. More...
TOrg &	CSeqdesc_Base::SetOrg (void)
	Select the variant. More...
void	CSeqdesc_Base::SetOrg (TOrg &value)
	Select the variant and set its data. More...
bool	CSeqdesc_Base::IsComment (void) const
	Check if variant Comment is selected. More...
const TComment &	CSeqdesc_Base::GetComment (void) const
	Get the variant data. More...
TComment &	CSeqdesc_Base::SetComment (void)
	Select the variant. More...
void	CSeqdesc_Base::SetComment (const TComment &value)
	Select the variant and set its data. More...
bool	CSeqdesc_Base::IsNum (void) const
	Check if variant Num is selected. More...
const TNum &	CSeqdesc_Base::GetNum (void) const
	Get the variant data. More...
TNum &	CSeqdesc_Base::SetNum (void)
	Select the variant. More...
void	CSeqdesc_Base::SetNum (TNum &value)
	Select the variant and set its data. More...
bool	CSeqdesc_Base::IsMaploc (void) const
	Check if variant Maploc is selected. More...
const TMaploc &	CSeqdesc_Base::GetMaploc (void) const
	Get the variant data. More...
TMaploc &	CSeqdesc_Base::SetMaploc (void)
	Select the variant. More...
void	CSeqdesc_Base::SetMaploc (TMaploc &value)
	Select the variant and set its data. More...
bool	CSeqdesc_Base::IsPir (void) const
	Check if variant Pir is selected. More...
const TPir &	CSeqdesc_Base::GetPir (void) const
	Get the variant data. More...
TPir &	CSeqdesc_Base::SetPir (void)
	Select the variant. More...
void	CSeqdesc_Base::SetPir (TPir &value)
	Select the variant and set its data. More...
bool	CSeqdesc_Base::IsGenbank (void) const
	Check if variant Genbank is selected. More...
const TGenbank &	CSeqdesc_Base::GetGenbank (void) const
	Get the variant data. More...
TGenbank &	CSeqdesc_Base::SetGenbank (void)
	Select the variant. More...
void	CSeqdesc_Base::SetGenbank (TGenbank &value)
	Select the variant and set its data. More...
bool	CSeqdesc_Base::IsPub (void) const
	Check if variant Pub is selected. More...
const TPub &	CSeqdesc_Base::GetPub (void) const
	Get the variant data. More...
TPub &	CSeqdesc_Base::SetPub (void)
	Select the variant. More...
void	CSeqdesc_Base::SetPub (TPub &value)
	Select the variant and set its data. More...
bool	CSeqdesc_Base::IsRegion (void) const
	Check if variant Region is selected. More...
const TRegion &	CSeqdesc_Base::GetRegion (void) const
	Get the variant data. More...
TRegion &	CSeqdesc_Base::SetRegion (void)
	Select the variant. More...
void	CSeqdesc_Base::SetRegion (const TRegion &value)
	Select the variant and set its data. More...
bool	CSeqdesc_Base::IsUser (void) const
	Check if variant User is selected. More...
const TUser &	CSeqdesc_Base::GetUser (void) const
	Get the variant data. More...
TUser &	CSeqdesc_Base::SetUser (void)
	Select the variant. More...
void	CSeqdesc_Base::SetUser (TUser &value)
	Select the variant and set its data. More...
bool	CSeqdesc_Base::IsSp (void) const
	Check if variant Sp is selected. More...
const TSp &	CSeqdesc_Base::GetSp (void) const
	Get the variant data. More...
TSp &	CSeqdesc_Base::SetSp (void)
	Select the variant. More...
void	CSeqdesc_Base::SetSp (TSp &value)
	Select the variant and set its data. More...
bool	CSeqdesc_Base::IsDbxref (void) const
	Check if variant Dbxref is selected. More...
const TDbxref &	CSeqdesc_Base::GetDbxref (void) const
	Get the variant data. More...
TDbxref &	CSeqdesc_Base::SetDbxref (void)
	Select the variant. More...
void	CSeqdesc_Base::SetDbxref (TDbxref &value)
	Select the variant and set its data. More...
bool	CSeqdesc_Base::IsEmbl (void) const
	Check if variant Embl is selected. More...
const TEmbl &	CSeqdesc_Base::GetEmbl (void) const
	Get the variant data. More...
TEmbl &	CSeqdesc_Base::SetEmbl (void)
	Select the variant. More...
void	CSeqdesc_Base::SetEmbl (TEmbl &value)
	Select the variant and set its data. More...
bool	CSeqdesc_Base::IsCreate_date (void) const
	Check if variant Create_date is selected. More...
const TCreate_date &	CSeqdesc_Base::GetCreate_date (void) const
	Get the variant data. More...
TCreate_date &	CSeqdesc_Base::SetCreate_date (void)
	Select the variant. More...
void	CSeqdesc_Base::SetCreate_date (TCreate_date &value)
	Select the variant and set its data. More...
bool	CSeqdesc_Base::IsUpdate_date (void) const
	Check if variant Update_date is selected. More...
const TUpdate_date &	CSeqdesc_Base::GetUpdate_date (void) const
	Get the variant data. More...
TUpdate_date &	CSeqdesc_Base::SetUpdate_date (void)
	Select the variant. More...
void	CSeqdesc_Base::SetUpdate_date (TUpdate_date &value)
	Select the variant and set its data. More...
bool	CSeqdesc_Base::IsPrf (void) const
	Check if variant Prf is selected. More...
const TPrf &	CSeqdesc_Base::GetPrf (void) const
	Get the variant data. More...
TPrf &	CSeqdesc_Base::SetPrf (void)
	Select the variant. More...
void	CSeqdesc_Base::SetPrf (TPrf &value)
	Select the variant and set its data. More...
bool	CSeqdesc_Base::IsPdb (void) const
	Check if variant Pdb is selected. More...
const TPdb &	CSeqdesc_Base::GetPdb (void) const
	Get the variant data. More...
TPdb &	CSeqdesc_Base::SetPdb (void)
	Select the variant. More...
void	CSeqdesc_Base::SetPdb (TPdb &value)
	Select the variant and set its data. More...
bool	CSeqdesc_Base::IsHet (void) const
	Check if variant Het is selected. More...
const THet &	CSeqdesc_Base::GetHet (void) const
	Get the variant data. More...
THet &	CSeqdesc_Base::SetHet (void)
	Select the variant. More...
void	CSeqdesc_Base::SetHet (const THet &value)
	Select the variant and set its data. More...
bool	CSeqdesc_Base::IsSource (void) const
	Check if variant Source is selected. More...
const TSource &	CSeqdesc_Base::GetSource (void) const
	Get the variant data. More...
TSource &	CSeqdesc_Base::SetSource (void)
	Select the variant. More...
void	CSeqdesc_Base::SetSource (TSource &value)
	Select the variant and set its data. More...
bool	CSeqdesc_Base::IsMolinfo (void) const
	Check if variant Molinfo is selected. More...
const TMolinfo &	CSeqdesc_Base::GetMolinfo (void) const
	Get the variant data. More...
TMolinfo &	CSeqdesc_Base::SetMolinfo (void)
	Select the variant. More...
void	CSeqdesc_Base::SetMolinfo (TMolinfo &value)
	Select the variant and set its data. More...
bool	CSeqdesc_Base::IsModelev (void) const
	Check if variant Modelev is selected. More...
const TModelev &	CSeqdesc_Base::GetModelev (void) const
	Get the variant data. More...
TModelev &	CSeqdesc_Base::SetModelev (void)
	Select the variant. More...
void	CSeqdesc_Base::SetModelev (TModelev &value)
	Select the variant and set its data. More...
	CSeqdesc_Base::CSeqdesc_Base (const CSeqdesc_Base &)
CSeqdesc_Base &	CSeqdesc_Base::operator= (const CSeqdesc_Base &)
void	CSeqdesc_Base::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
	CTextannot_id::CTextannot_id (void)
	CTextannot_id::~CTextannot_id (void)
	CTextannot_id::CTextannot_id (const CTextannot_id &value)
CTextannot_id &	CTextannot_id::operator= (const CTextannot_id &value)
	CTextannot_id_Base::CTextannot_id_Base (void)
virtual	CTextannot_id_Base::~CTextannot_id_Base (void)
	CTextannot_id_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CTextannot_id_Base::IsSetName (void) const
	Check if a value has been assigned to Name data member. More...
bool	CTextannot_id_Base::CanGetName (void) const
	Check if it is safe to call GetName method. More...
void	CTextannot_id_Base::ResetName (void)
	Reset Name data member. More...
const TName &	CTextannot_id_Base::GetName (void) const
	Get the Name member data. More...
void	CTextannot_id_Base::SetName (const TName &value)
	Assign a value to Name data member. More...
void	CTextannot_id_Base::SetName (TName &&value)
TName &	CTextannot_id_Base::SetName (void)
	Assign a value to Name data member. More...
bool	CTextannot_id_Base::IsSetAccession (void) const
	Check if a value has been assigned to Accession data member. More...
bool	CTextannot_id_Base::CanGetAccession (void) const
	Check if it is safe to call GetAccession method. More...
void	CTextannot_id_Base::ResetAccession (void)
	Reset Accession data member. More...
const TAccession &	CTextannot_id_Base::GetAccession (void) const
	Get the Accession member data. More...
void	CTextannot_id_Base::SetAccession (const TAccession &value)
	Assign a value to Accession data member. More...
void	CTextannot_id_Base::SetAccession (TAccession &&value)
TAccession &	CTextannot_id_Base::SetAccession (void)
	Assign a value to Accession data member. More...
bool	CTextannot_id_Base::IsSetRelease (void) const
	Check if a value has been assigned to Release data member. More...
bool	CTextannot_id_Base::CanGetRelease (void) const
	Check if it is safe to call GetRelease method. More...
void	CTextannot_id_Base::ResetRelease (void)
	Reset Release data member. More...
const TRelease &	CTextannot_id_Base::GetRelease (void) const
	Get the Release member data. More...
void	CTextannot_id_Base::SetRelease (const TRelease &value)
	Assign a value to Release data member. More...
void	CTextannot_id_Base::SetRelease (TRelease &&value)
TRelease &	CTextannot_id_Base::SetRelease (void)
	Assign a value to Release data member. More...
bool	CTextannot_id_Base::IsSetVersion (void) const
	Check if a value has been assigned to Version data member. More...
bool	CTextannot_id_Base::CanGetVersion (void) const
	Check if it is safe to call GetVersion method. More...
void	CTextannot_id_Base::ResetVersion (void)
	Reset Version data member. More...
TVersion	CTextannot_id_Base::GetVersion (void) const
	Get the Version member data. More...
void	CTextannot_id_Base::SetVersion (TVersion value)
	Assign a value to Version data member. More...
TVersion &	CTextannot_id_Base::SetVersion (void)
	Assign a value to Version data member. More...
virtual void	CTextannot_id_Base::Reset (void)
	Reset the whole object. More...
	CTextannot_id_Base::CTextannot_id_Base (const CTextannot_id_Base &)
CTextannot_id_Base &	CTextannot_id_Base::operator= (const CTextannot_id_Base &)

Variables
Uint4	CAlign_def_Base::m_set_State [1]
int	CAlign_def_Base::m_Align_type
list< CRef< CSeq_id > >	CAlign_def_Base::m_Ids
Uint4	CAnnot_descr_Base::m_set_State [1]
list< CRef< CAnnotdesc > >	CAnnot_descr_Base::m_data
E_Choice	CAnnot_id_Base::m_choice
static const char *const	CAnnot_id_Base::sm_SelectionNames []
ncbi::TIntId   CAnnot_id_Base::m_Ncbi
NCBI_NS_NCBI::CSerialObject *   CAnnot_id_Base::m_object
union {
ncbi::TIntId   CAnnot_id_Base::m_Ncbi
NCBI_NS_NCBI::CSerialObject *   CAnnot_id_Base::m_object
};
E_Choice	CAnnotdesc_Base::m_choice
static const char *const	CAnnotdesc_Base::sm_SelectionNames []
NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CAnnotdesc_Base::m_string
NCBI_NS_NCBI::CSerialObject *   CAnnotdesc_Base::m_object
union {
NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CAnnotdesc_Base::m_string
NCBI_NS_NCBI::CSerialObject *   CAnnotdesc_Base::m_object
};
Uint4	CBioseq_Base::m_set_State [1]
list< CRef< CSeq_id > >	CBioseq_Base::m_Id
CRef< TDescr >	CBioseq_Base::m_Descr
CRef< TInst >	CBioseq_Base::m_Inst
list< CRef< CSeq_annot > >	CBioseq_Base::m_Annot
Uint4	CDelta_ext_Base::m_set_State [1]
list< CRef< CDelta_seq > >	CDelta_ext_Base::m_data
E_Choice	CDelta_seq_Base::m_choice
static const char *const	CDelta_seq_Base::sm_SelectionNames []
NCBI_NS_NCBI::CSerialObject *	CDelta_seq_Base::m_object
Uint4	CLinkage_evidence_Base::m_set_State [1]
int	CLinkage_evidence_Base::m_Type
Uint4	CMap_ext_Base::m_set_State [1]
list< CRef< CSeq_feat > >	CMap_ext_Base::m_data
Uint4	CMolInfo_Base::m_set_State [1]
int	CMolInfo_Base::m_Biomol
int	CMolInfo_Base::m_Tech
string	CMolInfo_Base::m_Techexp
int	CMolInfo_Base::m_Completeness
string	CMolInfo_Base::m_Gbmoltype
Uint4	CNum_cont_Base::m_set_State [1]
TSignedSeqPos	CNum_cont_Base::m_Refnum
bool	CNum_cont_Base::m_Has_zero
bool	CNum_cont_Base::m_Ascending
Uint4	CNum_enum_Base::m_set_State [1]
TSeqPos	CNum_enum_Base::m_Num
list< string >	CNum_enum_Base::m_Names
Uint4	CNum_real_Base::m_set_State [1]
double	CNum_real_Base::m_A
double	CNum_real_Base::m_B
string	CNum_real_Base::m_Units
Uint4	CNum_ref_Base::m_set_State [1]
EType	CNum_ref_Base::m_Type
CRef< TAligns >	CNum_ref_Base::m_Aligns
E_Choice	CNumbering_Base::m_choice
static const char *const	CNumbering_Base::sm_SelectionNames []
NCBI_NS_NCBI::CSerialObject *	CNumbering_Base::m_object
Uint4	CPubdesc_Base::m_set_State [1]
CRef< TPub >	CPubdesc_Base::m_Pub
string	CPubdesc_Base::m_Name
string	CPubdesc_Base::m_Fig
CRef< TNum >	CPubdesc_Base::m_Num
bool	CPubdesc_Base::m_Numexc
bool	CPubdesc_Base::m_Poly_a
string	CPubdesc_Base::m_Maploc
string	CPubdesc_Base::m_Seq_raw
int	CPubdesc_Base::m_Align_group
string	CPubdesc_Base::m_Comment
int	CPubdesc_Base::m_Reftype
Uint4	CSeg_ext_Base::m_set_State [1]
list< CRef< CSeq_loc > >	CSeg_ext_Base::m_data
E_Choice	CSeq_annot_Base::C_Data::m_choice
static const char *const	CSeq_annot_Base::C_Data::sm_SelectionNames []
NCBI_NS_NCBI::CUnionBuffer< TFtable >   CSeq_annot_Base::C_Data::m_Ftable
NCBI_NS_NCBI::CUnionBuffer< TAlign >   CSeq_annot_Base::C_Data::m_Align
NCBI_NS_NCBI::CUnionBuffer< TGraph >   CSeq_annot_Base::C_Data::m_Graph
NCBI_NS_NCBI::CUnionBuffer< TIds >   CSeq_annot_Base::C_Data::m_Ids
NCBI_NS_NCBI::CUnionBuffer< TLocs >   CSeq_annot_Base::C_Data::m_Locs
NCBI_NS_NCBI::CSerialObject *   CSeq_annot_Base::C_Data::m_object
union {
NCBI_NS_NCBI::CUnionBuffer< TFtable >   CSeq_annot_Base::C_Data::m_Ftable
NCBI_NS_NCBI::CUnionBuffer< TAlign >   CSeq_annot_Base::C_Data::m_Align
NCBI_NS_NCBI::CUnionBuffer< TGraph >   CSeq_annot_Base::C_Data::m_Graph
NCBI_NS_NCBI::CUnionBuffer< TIds >   CSeq_annot_Base::C_Data::m_Ids
NCBI_NS_NCBI::CUnionBuffer< TLocs >   CSeq_annot_Base::C_Data::m_Locs
NCBI_NS_NCBI::CSerialObject *   CSeq_annot_Base::C_Data::m_object
};
Uint4	CSeq_annot_Base::m_set_State [1]
list< CRef< CAnnot_id > >	CSeq_annot_Base::m_Id
int	CSeq_annot_Base::m_Db
string	CSeq_annot_Base::m_Name
CRef< TDesc >	CSeq_annot_Base::m_Desc
CRef< TData >	CSeq_annot_Base::m_Data
E_Choice	CSeq_data_Base::m_choice
static const char *const	CSeq_data_Base::sm_SelectionNames []
NCBI_NS_NCBI::CUnionBuffer< TIupacna >   CSeq_data_Base::m_Iupacna
NCBI_NS_NCBI::CUnionBuffer< TIupacaa >   CSeq_data_Base::m_Iupacaa
NCBI_NS_NCBI::CUnionBuffer< TNcbi2na >   CSeq_data_Base::m_Ncbi2na
NCBI_NS_NCBI::CUnionBuffer< TNcbi4na >   CSeq_data_Base::m_Ncbi4na
NCBI_NS_NCBI::CUnionBuffer< TNcbi8na >   CSeq_data_Base::m_Ncbi8na
NCBI_NS_NCBI::CUnionBuffer< TNcbipna >   CSeq_data_Base::m_Ncbipna
NCBI_NS_NCBI::CUnionBuffer< TNcbi8aa >   CSeq_data_Base::m_Ncbi8aa
NCBI_NS_NCBI::CUnionBuffer< TNcbieaa >   CSeq_data_Base::m_Ncbieaa
NCBI_NS_NCBI::CUnionBuffer< TNcbipaa >   CSeq_data_Base::m_Ncbipaa
NCBI_NS_NCBI::CUnionBuffer< TNcbistdaa >   CSeq_data_Base::m_Ncbistdaa
NCBI_NS_NCBI::CSerialObject *   CSeq_data_Base::m_object
union {
NCBI_NS_NCBI::CUnionBuffer< TIupacna >   CSeq_data_Base::m_Iupacna
NCBI_NS_NCBI::CUnionBuffer< TIupacaa >   CSeq_data_Base::m_Iupacaa
NCBI_NS_NCBI::CUnionBuffer< TNcbi2na >   CSeq_data_Base::m_Ncbi2na
NCBI_NS_NCBI::CUnionBuffer< TNcbi4na >   CSeq_data_Base::m_Ncbi4na
NCBI_NS_NCBI::CUnionBuffer< TNcbi8na >   CSeq_data_Base::m_Ncbi8na
NCBI_NS_NCBI::CUnionBuffer< TNcbipna >   CSeq_data_Base::m_Ncbipna
NCBI_NS_NCBI::CUnionBuffer< TNcbi8aa >   CSeq_data_Base::m_Ncbi8aa
NCBI_NS_NCBI::CUnionBuffer< TNcbieaa >   CSeq_data_Base::m_Ncbieaa
NCBI_NS_NCBI::CUnionBuffer< TNcbipaa >   CSeq_data_Base::m_Ncbipaa
NCBI_NS_NCBI::CUnionBuffer< TNcbistdaa >   CSeq_data_Base::m_Ncbistdaa
NCBI_NS_NCBI::CSerialObject *   CSeq_data_Base::m_object
};
Uint4	CSeq_descr_Base::m_set_State [1]
list< CRef< CSeqdesc > >	CSeq_descr_Base::m_data
E_Choice	CSeq_ext_Base::m_choice
static const char *const	CSeq_ext_Base::sm_SelectionNames []
NCBI_NS_NCBI::CSerialObject *	CSeq_ext_Base::m_object
Uint4	CSeq_gap_Base::m_set_State [1]
int	CSeq_gap_Base::m_Type
int	CSeq_gap_Base::m_Linkage
list< CRef< CLinkage_evidence > >	CSeq_gap_Base::m_Linkage_evidence
E_Choice	CSeq_hist_Base::C_Deleted::m_choice
static const char *const	CSeq_hist_Base::C_Deleted::sm_SelectionNames []
TBool   CSeq_hist_Base::C_Deleted::m_Bool
NCBI_NS_NCBI::CSerialObject *   CSeq_hist_Base::C_Deleted::m_object
union {
TBool   CSeq_hist_Base::C_Deleted::m_Bool
NCBI_NS_NCBI::CSerialObject *   CSeq_hist_Base::C_Deleted::m_object
};
Uint4	CSeq_hist_Base::m_set_State [1]
list< CRef< CSeq_align > >	CSeq_hist_Base::m_Assembly
CRef< TReplaces >	CSeq_hist_Base::m_Replaces
CRef< TReplaced_by >	CSeq_hist_Base::m_Replaced_by
CRef< TDeleted >	CSeq_hist_Base::m_Deleted
Uint4	CSeq_hist_rec_Base::m_set_State [1]
CRef< TDate >	CSeq_hist_rec_Base::m_Date
list< CRef< CSeq_id > >	CSeq_hist_rec_Base::m_Ids
Uint4	CSeq_inst_Base::m_set_State [1]
ERepr	CSeq_inst_Base::m_Repr
EMol	CSeq_inst_Base::m_Mol
TSeqPos	CSeq_inst_Base::m_Length
CRef< TFuzz >	CSeq_inst_Base::m_Fuzz
ETopology	CSeq_inst_Base::m_Topology
EStrand	CSeq_inst_Base::m_Strand
CRef< TSeq_data >	CSeq_inst_Base::m_Seq_data
CRef< TExt >	CSeq_inst_Base::m_Ext
CRef< THist >	CSeq_inst_Base::m_Hist
Uint4	CSeq_literal_Base::m_set_State [1]
TSeqPos	CSeq_literal_Base::m_Length
CRef< TFuzz >	CSeq_literal_Base::m_Fuzz
CRef< TSeq_data >	CSeq_literal_Base::m_Seq_data
E_Choice	CSeqdesc_Base::m_choice
static const char *const	CSeqdesc_Base::sm_SelectionNames []
TMol_type   CSeqdesc_Base::m_Mol_type
NCBI_NS_NCBI::CUnionBuffer< TModif >   CSeqdesc_Base::m_Modif
TMethod   CSeqdesc_Base::m_Method
NCBI_NS_NCBI::CUnionBuffer< THet >   CSeqdesc_Base::m_Het
NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CSeqdesc_Base::m_string
NCBI_NS_NCBI::CSerialObject *   CSeqdesc_Base::m_object
union {
TMol_type   CSeqdesc_Base::m_Mol_type
NCBI_NS_NCBI::CUnionBuffer< TModif >   CSeqdesc_Base::m_Modif
TMethod   CSeqdesc_Base::m_Method
NCBI_NS_NCBI::CUnionBuffer< THet >   CSeqdesc_Base::m_Het
NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CSeqdesc_Base::m_string
NCBI_NS_NCBI::CSerialObject *   CSeqdesc_Base::m_object
};
Uint4	CTextannot_id_Base::m_set_State [1]
string	CTextannot_id_Base::m_Name
string	CTextannot_id_Base::m_Accession
string	CTextannot_id_Base::m_Release
int	CTextannot_id_Base::m_Version

Detailed Description

Typedef Documentation

TA

typedef double CNum_real_Base::TA

Definition at line 86 of file Num_real_.hpp.

TAccession

typedef string CTextannot_id_Base::TAccession

Definition at line 92 of file Textannot_id_.hpp.

TAlign [1/2]

typedef CAlign_def CAnnotdesc_Base::TAlign

Definition at line 169 of file Annotdesc_.hpp.

TAlign [2/2]

typedef list< CRef< CSeq_align > > CSeq_annot_Base::C_Data::TAlign

Definition at line 194 of file Seq_annot_.hpp.

TAlign_group

typedef int CPubdesc_Base::TAlign_group

Definition at line 110 of file Pubdesc_.hpp.

TAlign_type

typedef int CAlign_def_Base::TAlign_type

Definition at line 100 of file Align_def_.hpp.

TAligns

typedef CSeq_align CNum_ref_Base::TAligns

Definition at line 97 of file Num_ref_.hpp.

TAnnot

typedef list< CRef< CSeq_annot > > CBioseq_Base::TAnnot

Definition at line 97 of file Bioseq_.hpp.

TAscending

typedef bool CNum_cont_Base::TAscending

Definition at line 84 of file Num_cont_.hpp.

TAssembly

typedef list< CRef< CSeq_align > > CSeq_hist_Base::TAssembly

Definition at line 248 of file Seq_hist_.hpp.

TB

typedef double CNum_real_Base::TB

Definition at line 87 of file Num_real_.hpp.

TBiomol

typedef int CMolInfo_Base::TBiomol

Definition at line 170 of file MolInfo_.hpp.

TBool

typedef bool CSeq_hist_Base::C_Deleted::TBool

Definition at line 171 of file Seq_hist_.hpp.

TComment [1/3]

typedef string CAnnotdesc_Base::TComment

Definition at line 163 of file Annotdesc_.hpp.

TComment [2/3]

typedef string CPubdesc_Base::TComment

Definition at line 111 of file Pubdesc_.hpp.

TComment [3/3]

typedef string CSeqdesc_Base::TComment

Definition at line 196 of file Seqdesc_.hpp.

TCompleteness

typedef int CMolInfo_Base::TCompleteness

Definition at line 173 of file MolInfo_.hpp.

TCont

typedef CNum_cont CNumbering_Base::TCont

Definition at line 150 of file Numbering_.hpp.

TCreate_date [1/2]

typedef CDate CAnnotdesc_Base::TCreate_date

Definition at line 166 of file Annotdesc_.hpp.

TCreate_date [2/2]

typedef CDate CSeqdesc_Base::TCreate_date

Definition at line 207 of file Seqdesc_.hpp.

Tdata [1/5]

typedef list< CRef< CAnnotdesc > > CAnnot_descr_Base::Tdata

Definition at line 89 of file Annot_descr_.hpp.

Tdata [2/5]

typedef list< CRef< CDelta_seq > > CDelta_ext_Base::Tdata

Definition at line 89 of file Delta_ext_.hpp.

Tdata [3/5]

typedef list< CRef< CSeq_feat > > CMap_ext_Base::Tdata

Definition at line 89 of file Map_ext_.hpp.

Tdata [4/5]

typedef list< CRef< CSeq_loc > > CSeg_ext_Base::Tdata

Definition at line 89 of file Seg_ext_.hpp.

TData

typedef C_Data CSeq_annot_Base::TData

Definition at line 360 of file Seq_annot_.hpp.

Tdata [5/5]

typedef list< CRef< CSeqdesc > > CSeq_descr_Base::Tdata

Definition at line 91 of file Seq_descr_.hpp.

TDate [1/2]

typedef CDate CSeq_hist_Base::C_Deleted::TDate

Definition at line 172 of file Seq_hist_.hpp.

TDate [2/2]

typedef CDate CSeq_hist_rec_Base::TDate

Definition at line 90 of file Seq_hist_rec_.hpp.

TDb

typedef int CSeq_annot_Base::TDb

Definition at line 357 of file Seq_annot_.hpp.

TDbxref

typedef CDbtag CSeqdesc_Base::TDbxref

Definition at line 205 of file Seqdesc_.hpp.

TDeleted

typedef C_Deleted CSeq_hist_Base::TDeleted

Definition at line 251 of file Seq_hist_.hpp.

TDelta

typedef CDelta_ext CSeq_ext_Base::TDelta

Definition at line 155 of file Seq_ext_.hpp.

TDesc

typedef CAnnot_descr CSeq_annot_Base::TDesc

Definition at line 359 of file Seq_annot_.hpp.

TDescr

typedef CSeq_descr CBioseq_Base::TDescr

Definition at line 95 of file Bioseq_.hpp.

TEmbl

typedef CEMBL_block CSeqdesc_Base::TEmbl

Definition at line 206 of file Seqdesc_.hpp.

TEnum

typedef CNum_enum CNumbering_Base::TEnum

Definition at line 151 of file Numbering_.hpp.

TExt

typedef CSeq_ext CSeq_inst_Base::TExt

Definition at line 152 of file Seq_inst_.hpp.

TFig

typedef string CPubdesc_Base::TFig

Definition at line 104 of file Pubdesc_.hpp.

TFtable

typedef list< CRef< CSeq_feat > > CSeq_annot_Base::C_Data::TFtable

Definition at line 193 of file Seq_annot_.hpp.

TFuzz [1/2]

typedef CInt_fuzz CSeq_inst_Base::TFuzz

Definition at line 148 of file Seq_inst_.hpp.

TFuzz [2/2]

typedef CInt_fuzz CSeq_literal_Base::TFuzz

Definition at line 87 of file Seq_literal_.hpp.

TGap

typedef CSeq_gap CSeq_data_Base::TGap

Definition at line 179 of file Seq_data_.hpp.

TGbmoltype

typedef string CMolInfo_Base::TGbmoltype

Definition at line 174 of file MolInfo_.hpp.

TGenbank

typedef CGB_block CSeqdesc_Base::TGenbank

Definition at line 200 of file Seqdesc_.hpp.

TGeneral

typedef CDbtag CAnnot_id_Base::TGeneral

Definition at line 150 of file Annot_id_.hpp.

TGraph

typedef list< CRef< CSeq_graph > > CSeq_annot_Base::C_Data::TGraph

Definition at line 195 of file Seq_annot_.hpp.

THas_zero

typedef bool CNum_cont_Base::THas_zero

Definition at line 83 of file Num_cont_.hpp.

THet

typedef CHeterogen CSeqdesc_Base::THet

Definition at line 211 of file Seqdesc_.hpp.

THist

typedef CSeq_hist CSeq_inst_Base::THist

Definition at line 153 of file Seq_inst_.hpp.

TId [1/2]

typedef list< CRef< CSeq_id > > CBioseq_Base::TId

Definition at line 94 of file Bioseq_.hpp.

TId [2/2]

typedef list< CRef< CAnnot_id > > CSeq_annot_Base::TId

Definition at line 356 of file Seq_annot_.hpp.

TIds [1/3]

typedef list< CRef< CSeq_id > > CAlign_def_Base::TIds

Definition at line 101 of file Align_def_.hpp.

TIds [2/3]

typedef list< CRef< CSeq_id > > CSeq_annot_Base::C_Data::TIds

Definition at line 196 of file Seq_annot_.hpp.

TIds [3/3]

typedef list< CRef< CSeq_id > > CSeq_hist_rec_Base::TIds

Definition at line 91 of file Seq_hist_rec_.hpp.

TInst

typedef CSeq_inst CBioseq_Base::TInst

Definition at line 96 of file Bioseq_.hpp.

TIupacaa

typedef CIUPACaa CSeq_data_Base::TIupacaa

Definition at line 170 of file Seq_data_.hpp.

TIupacna

typedef CIUPACna CSeq_data_Base::TIupacna

Definition at line 169 of file Seq_data_.hpp.

TLength [1/2]

typedef TSeqPos CSeq_inst_Base::TLength

Definition at line 147 of file Seq_inst_.hpp.

TLength [2/2]

typedef TSeqPos CSeq_literal_Base::TLength

Definition at line 86 of file Seq_literal_.hpp.

TLinkage

typedef int CSeq_gap_Base::TLinkage

Definition at line 117 of file Seq_gap_.hpp.

TLinkage_evidence

typedef list< CRef< CLinkage_evidence > > CSeq_gap_Base::TLinkage_evidence

Definition at line 118 of file Seq_gap_.hpp.

TLiteral

typedef CSeq_literal CDelta_seq_Base::TLiteral

Definition at line 146 of file Delta_seq_.hpp.

TLoc

typedef CSeq_loc CDelta_seq_Base::TLoc

Definition at line 145 of file Delta_seq_.hpp.

TLocal

typedef CObject_id CAnnot_id_Base::TLocal

Definition at line 148 of file Annot_id_.hpp.

TLocs

typedef list< CRef< CSeq_loc > > CSeq_annot_Base::C_Data::TLocs

Definition at line 197 of file Seq_annot_.hpp.

TMap

typedef CMap_ext CSeq_ext_Base::TMap

Definition at line 154 of file Seq_ext_.hpp.

TMaploc [1/2]

typedef string CPubdesc_Base::TMaploc

Definition at line 108 of file Pubdesc_.hpp.

TMaploc [2/2]

typedef CDbtag CSeqdesc_Base::TMaploc

Definition at line 198 of file Seqdesc_.hpp.

TmemberIndex [1/16]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CAlign_def_Base::TmemberIndex

Definition at line 109 of file Align_def_.hpp.

TmemberIndex [2/16]

typedef Tparent::CMemberIndex<E_memberIndex, 5> CBioseq_Base::TmemberIndex

Definition at line 107 of file Bioseq_.hpp.

TmemberIndex [3/16]

typedef Tparent::CMemberIndex<E_memberIndex, 2> CLinkage_evidence_Base::TmemberIndex

Definition at line 106 of file Linkage_evidence_.hpp.

TmemberIndex [4/16]

typedef Tparent::CMemberIndex<E_memberIndex, 6> CMolInfo_Base::TmemberIndex

Definition at line 185 of file MolInfo_.hpp.

TmemberIndex [5/16]

typedef Tparent::CMemberIndex<E_memberIndex, 4> CNum_cont_Base::TmemberIndex

Definition at line 93 of file Num_cont_.hpp.

TmemberIndex [6/16]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CNum_enum_Base::TmemberIndex

Definition at line 96 of file Num_enum_.hpp.

TmemberIndex [7/16]

typedef Tparent::CMemberIndex<E_memberIndex, 4> CNum_real_Base::TmemberIndex

Definition at line 97 of file Num_real_.hpp.

TmemberIndex [8/16]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CNum_ref_Base::TmemberIndex

Definition at line 105 of file Num_ref_.hpp.

TmemberIndex [9/16]

typedef Tparent::CMemberIndex<E_memberIndex, 12> CPubdesc_Base::TmemberIndex

Definition at line 129 of file Pubdesc_.hpp.

TmemberIndex [10/16]

typedef Tparent::CMemberIndex<E_memberIndex, 6> CSeq_annot_Base::TmemberIndex

Definition at line 371 of file Seq_annot_.hpp.

TmemberIndex [11/16]

typedef Tparent::CMemberIndex<E_memberIndex, 4> CSeq_gap_Base::TmemberIndex

Definition at line 127 of file Seq_gap_.hpp.

TmemberIndex [12/16]

typedef Tparent::CMemberIndex<E_memberIndex, 5> CSeq_hist_Base::TmemberIndex

Definition at line 261 of file Seq_hist_.hpp.

TmemberIndex [13/16]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CSeq_hist_rec_Base::TmemberIndex

Definition at line 99 of file Seq_hist_rec_.hpp.

TmemberIndex [14/16]

typedef Tparent::CMemberIndex<E_memberIndex, 10> CSeq_inst_Base::TmemberIndex

Definition at line 168 of file Seq_inst_.hpp.

TmemberIndex [15/16]

typedef Tparent::CMemberIndex<E_memberIndex, 4> CSeq_literal_Base::TmemberIndex

Definition at line 97 of file Seq_literal_.hpp.

TmemberIndex [16/16]

typedef Tparent::CMemberIndex<E_memberIndex, 5> CTextannot_id_Base::TmemberIndex

Definition at line 104 of file Textannot_id_.hpp.

TMethod

typedef EGIBB_method CSeqdesc_Base::TMethod

Definition at line 192 of file Seqdesc_.hpp.

TModelev

typedef CModelEvidenceSupport CSeqdesc_Base::TModelev

Definition at line 214 of file Seqdesc_.hpp.

TModif

typedef list< EGIBB_mod > CSeqdesc_Base::TModif

Definition at line 191 of file Seqdesc_.hpp.

TMol

typedef EMol CSeq_inst_Base::TMol

Definition at line 146 of file Seq_inst_.hpp.

TMol_type

typedef EGIBB_mol CSeqdesc_Base::TMol_type

Definition at line 190 of file Seqdesc_.hpp.

TMolinfo

typedef CMolInfo CSeqdesc_Base::TMolinfo

Definition at line 213 of file Seqdesc_.hpp.

TName [1/5]

typedef string CAnnotdesc_Base::TName

Definition at line 161 of file Annotdesc_.hpp.

TName [2/5]

typedef string CPubdesc_Base::TName

Definition at line 103 of file Pubdesc_.hpp.

TName [3/5]

typedef string CSeq_annot_Base::TName

Definition at line 358 of file Seq_annot_.hpp.

TName [4/5]

typedef string CSeqdesc_Base::TName

Definition at line 193 of file Seqdesc_.hpp.

TName [5/5]

typedef string CTextannot_id_Base::TName

Definition at line 91 of file Textannot_id_.hpp.

TNames

typedef list< string > CNum_enum_Base::TNames

Definition at line 88 of file Num_enum_.hpp.

TNcbi

typedef NCBI_NS_NCBI::TEntrezId CAnnot_id_Base::TNcbi

Definition at line 149 of file Annot_id_.hpp.

TNcbi2na

typedef CNCBI2na CSeq_data_Base::TNcbi2na

Definition at line 171 of file Seq_data_.hpp.

TNcbi4na

typedef CNCBI4na CSeq_data_Base::TNcbi4na

Definition at line 172 of file Seq_data_.hpp.

TNcbi8aa

typedef CNCBI8aa CSeq_data_Base::TNcbi8aa

Definition at line 175 of file Seq_data_.hpp.

TNcbi8na

typedef CNCBI8na CSeq_data_Base::TNcbi8na

Definition at line 173 of file Seq_data_.hpp.

TNcbieaa

typedef CNCBIeaa CSeq_data_Base::TNcbieaa

Definition at line 176 of file Seq_data_.hpp.

TNcbipaa

typedef CNCBIpaa CSeq_data_Base::TNcbipaa

Definition at line 177 of file Seq_data_.hpp.

TNcbipna

typedef CNCBIpna CSeq_data_Base::TNcbipna

Definition at line 174 of file Seq_data_.hpp.

TNcbistdaa

typedef CNCBIstdaa CSeq_data_Base::TNcbistdaa

Definition at line 178 of file Seq_data_.hpp.

TNum [1/3]

typedef TSeqPos CNum_enum_Base::TNum

Definition at line 87 of file Num_enum_.hpp.

TNum [2/3]

typedef CNumbering CPubdesc_Base::TNum

Definition at line 105 of file Pubdesc_.hpp.

TNum [3/3]

typedef CNumbering CSeqdesc_Base::TNum

Definition at line 197 of file Seqdesc_.hpp.

TNumexc

typedef bool CPubdesc_Base::TNumexc

Definition at line 106 of file Pubdesc_.hpp.

TOrg

typedef COrg_ref CSeqdesc_Base::TOrg

Definition at line 195 of file Seqdesc_.hpp.

TOther

typedef CTextannot_id CAnnot_id_Base::TOther

Definition at line 151 of file Annot_id_.hpp.

Tparent [1/70]

typedef CAlign_def_Base CAlign_def::Tparent

private

Definition at line 67 of file Align_def.hpp.

Tparent [2/70]

typedef CSerialObject CAlign_def_Base::Tparent

private

Definition at line 78 of file Align_def_.hpp.

Tparent [3/70]

typedef CAnnot_descr_Base CAnnot_descr::Tparent

private

Definition at line 67 of file Annot_descr.hpp.

Tparent [4/70]

typedef CSerialObject CAnnot_descr_Base::Tparent

private

Definition at line 78 of file Annot_descr_.hpp.

Tparent [5/70]

typedef CAnnot_id_Base CAnnot_id::Tparent

private

Definition at line 67 of file Annot_id.hpp.

Tparent [6/70]

typedef CSerialObject CAnnot_id_Base::Tparent

private

Definition at line 76 of file Annot_id_.hpp.

Tparent [7/70]

typedef CAnnotdesc_Base CAnnotdesc::Tparent

private

Definition at line 67 of file Annotdesc.hpp.

Tparent [8/70]

typedef CSerialObject CAnnotdesc_Base::Tparent

private

Definition at line 83 of file Annotdesc_.hpp.

Tparent [9/70]

typedef CSerialObject CBioseq_Base::Tparent

private

Definition at line 83 of file Bioseq_.hpp.

Tparent [10/70]

typedef CSerialObject CDelta_ext_Base::Tparent

private

Definition at line 78 of file Delta_ext_.hpp.

Tparent [11/70]

typedef CDelta_seq_Base CDelta_seq::Tparent

private

Definition at line 67 of file Delta_seq.hpp.

Tparent [12/70]

typedef CSerialObject CDelta_seq_Base::Tparent

private

Definition at line 75 of file Delta_seq_.hpp.

Tparent [13/70]

typedef CHeterogen_Base CHeterogen::Tparent

private

Definition at line 67 of file Heterogen.hpp.

Tparent [14/70]

typedef CStringAliasBase< string > CHeterogen_Base::Tparent

private

Definition at line 75 of file Heterogen_.hpp.

Tparent [15/70]

typedef CIUPACaa_Base CIUPACaa::Tparent

private

Definition at line 67 of file IUPACaa.hpp.

Tparent [16/70]

typedef CStringAliasBase< string > CIUPACaa_Base::Tparent

private

Definition at line 75 of file IUPACaa_.hpp.

Tparent [17/70]

typedef CIUPACna_Base CIUPACna::Tparent

private

Definition at line 67 of file IUPACna.hpp.

Tparent [18/70]

typedef CStringAliasBase< string > CIUPACna_Base::Tparent

private

Definition at line 75 of file IUPACna_.hpp.

Tparent [19/70]

typedef CSerialObject CLinkage_evidence_Base::Tparent

private

Definition at line 70 of file Linkage_evidence_.hpp.

Tparent [20/70]

typedef CMap_ext_Base CMap_ext::Tparent

private

Definition at line 67 of file Map_ext.hpp.

Tparent [21/70]

typedef CSerialObject CMap_ext_Base::Tparent

private

Definition at line 78 of file Map_ext_.hpp.

Tparent [22/70]

typedef CSerialObject CMolInfo_Base::Tparent

private

Definition at line 89 of file MolInfo_.hpp.

Tparent [23/70]

typedef CNCBI2na_Base CNCBI2na::Tparent

private

Definition at line 67 of file NCBI2na.hpp.

Tparent [24/70]

typedef CStringAliasBase< vector< char > > CNCBI2na_Base::Tparent

private

Definition at line 75 of file NCBI2na_.hpp.

Tparent [25/70]

typedef CNCBI4na_Base CNCBI4na::Tparent

private

Definition at line 67 of file NCBI4na.hpp.

Tparent [26/70]

typedef CStringAliasBase< vector< char > > CNCBI4na_Base::Tparent

private

Definition at line 77 of file NCBI4na_.hpp.

Tparent [27/70]

typedef CNCBI8aa_Base CNCBI8aa::Tparent

private

Definition at line 67 of file NCBI8aa.hpp.

Tparent [28/70]

typedef CStringAliasBase< vector< char > > CNCBI8aa_Base::Tparent

private

Definition at line 75 of file NCBI8aa_.hpp.

Tparent [29/70]

typedef CNCBI8na_Base CNCBI8na::Tparent

private

Definition at line 67 of file NCBI8na.hpp.

Tparent [30/70]

typedef CStringAliasBase< vector< char > > CNCBI8na_Base::Tparent

private

Definition at line 75 of file NCBI8na_.hpp.

Tparent [31/70]

typedef CNCBIeaa_Base CNCBIeaa::Tparent

private

Definition at line 67 of file NCBIeaa.hpp.

Tparent [32/70]

typedef CStringAliasBase< string > CNCBIeaa_Base::Tparent

private

Definition at line 76 of file NCBIeaa_.hpp.

Tparent [33/70]

typedef CNCBIpaa_Base CNCBIpaa::Tparent

private

Definition at line 67 of file NCBIpaa.hpp.

Tparent [34/70]

typedef CStringAliasBase< vector< char > > CNCBIpaa_Base::Tparent

private

Definition at line 77 of file NCBIpaa_.hpp.

Tparent [35/70]

typedef CNCBIpna_Base CNCBIpna::Tparent

private

Definition at line 67 of file NCBIpna.hpp.

Tparent [36/70]

typedef CStringAliasBase< vector< char > > CNCBIpna_Base::Tparent

private

Definition at line 76 of file NCBIpna_.hpp.

Tparent [37/70]

typedef CNCBIstdaa_Base CNCBIstdaa::Tparent

private

Definition at line 67 of file NCBIstdaa.hpp.

Tparent [38/70]

typedef CStringAliasBase< vector< char > > CNCBIstdaa_Base::Tparent

private

Definition at line 75 of file NCBIstdaa_.hpp.

Tparent [39/70]

typedef CNum_cont_Base CNum_cont::Tparent

private

Definition at line 67 of file Num_cont.hpp.

Tparent [40/70]

typedef CSerialObject CNum_cont_Base::Tparent

private

Definition at line 71 of file Num_cont_.hpp.

Tparent [41/70]

typedef CNum_enum_Base CNum_enum::Tparent

private

Definition at line 67 of file Num_enum.hpp.

Tparent [42/70]

typedef CSerialObject CNum_enum_Base::Tparent

private

Definition at line 76 of file Num_enum_.hpp.

Tparent [43/70]

typedef CNum_real_Base CNum_real::Tparent

private

Definition at line 67 of file Num_real.hpp.

Tparent [44/70]

typedef CSerialObject CNum_real_Base::Tparent

private

Definition at line 75 of file Num_real_.hpp.

Tparent [45/70]

typedef CNum_ref_Base CNum_ref::Tparent

private

Definition at line 67 of file Num_ref.hpp.

Tparent [46/70]

typedef CSerialObject CNum_ref_Base::Tparent

private

Definition at line 75 of file Num_ref_.hpp.

Tparent [47/70]

typedef CNumbering_Base CNumbering::Tparent

private

Definition at line 67 of file Numbering.hpp.

Tparent [48/70]

typedef CSerialObject CNumbering_Base::Tparent

private

Definition at line 78 of file Numbering_.hpp.

Tparent [49/70]

typedef CSerialObject CPubdesc_Base::Tparent

private

Definition at line 80 of file Pubdesc_.hpp.

Tparent [50/70]

typedef CRef_ext_Base CRef_ext::Tparent

private

Definition at line 67 of file Ref_ext.hpp.

Tparent [51/70]

typedef CSeq_loc CRef_ext_Base::Tparent

private

Definition at line 74 of file Ref_ext_.hpp.

Tparent [52/70]

typedef CSeg_ext_Base CSeg_ext::Tparent

private

Definition at line 67 of file Seg_ext.hpp.

Tparent [53/70]

typedef CSerialObject CSeg_ext_Base::Tparent

private

Definition at line 78 of file Seg_ext_.hpp.

Tparent [54/70]

typedef CSerialObject CSeq_annot_Base::Tparent

private

Definition at line 87 of file Seq_annot_.hpp.

Tparent [55/70]

typedef CSerialObject CSeq_annot_Base::C_Data::Tparent

private

Definition at line 119 of file Seq_annot_.hpp.

Tparent [56/70]

typedef CSerialObject CSeq_data_Base::Tparent

private

Definition at line 90 of file Seq_data_.hpp.

Tparent [57/70]

typedef CSerialObject CSeq_descr_Base::Tparent

private

Definition at line 80 of file Seq_descr_.hpp.

Tparent [58/70]

typedef CSeq_ext_Base CSeq_ext::Tparent

private

Definition at line 67 of file Seq_ext.hpp.

Tparent [59/70]

typedef CSerialObject CSeq_ext_Base::Tparent

private

Definition at line 80 of file Seq_ext_.hpp.

Tparent [60/70]

typedef CSerialObject CSeq_gap_Base::Tparent

private

Definition at line 78 of file Seq_gap_.hpp.

Tparent [61/70]

typedef CSeq_hist_Base CSeq_hist::Tparent

private

Definition at line 67 of file Seq_hist.hpp.

Tparent [62/70]

typedef CSerialObject CSeq_hist_Base::Tparent

private

Definition at line 84 of file Seq_hist_.hpp.

Tparent [63/70]

typedef CSerialObject CSeq_hist_Base::C_Deleted::Tparent

private

Definition at line 101 of file Seq_hist_.hpp.

Tparent [64/70]

typedef CSeq_hist_rec_Base CSeq_hist_rec::Tparent

private

Definition at line 67 of file Seq_hist_rec.hpp.

Tparent [65/70]

typedef CSerialObject CSeq_hist_rec_Base::Tparent

private

Definition at line 79 of file Seq_hist_rec_.hpp.

Tparent [66/70]

typedef CSerialObject CSeq_inst_Base::Tparent

private

Definition at line 80 of file Seq_inst_.hpp.

Tparent [67/70]

typedef CSerialObject CSeq_literal_Base::Tparent

private

Definition at line 75 of file Seq_literal_.hpp.

Tparent [68/70]

typedef CSerialObject CSeqdesc_Base::Tparent

private

Definition at line 97 of file Seqdesc_.hpp.

Tparent [69/70]

typedef CTextannot_id_Base CTextannot_id::Tparent

private

Definition at line 67 of file Textannot_id.hpp.

Tparent [70/70]

typedef CSerialObject CTextannot_id_Base::Tparent

private

Definition at line 80 of file Textannot_id_.hpp.

TPdb

typedef CPDB_block CSeqdesc_Base::TPdb

Definition at line 210 of file Seqdesc_.hpp.

TPir

typedef CPIR_block CSeqdesc_Base::TPir

Definition at line 199 of file Seqdesc_.hpp.

TPoly_a

typedef bool CPubdesc_Base::TPoly_a

Definition at line 107 of file Pubdesc_.hpp.

TPrf

typedef CPRF_block CSeqdesc_Base::TPrf

Definition at line 209 of file Seqdesc_.hpp.

TPub [1/3]

typedef CPubdesc CAnnotdesc_Base::TPub

Definition at line 164 of file Annotdesc_.hpp.

TPub [2/3]

typedef CPub_equiv CPubdesc_Base::TPub

Definition at line 102 of file Pubdesc_.hpp.

TPub [3/3]

typedef CPubdesc CSeqdesc_Base::TPub

Definition at line 201 of file Seqdesc_.hpp.

TReal

typedef CNum_real CNumbering_Base::TReal

Definition at line 153 of file Numbering_.hpp.

TRef [1/2]

typedef CNum_ref CNumbering_Base::TRef

Definition at line 152 of file Numbering_.hpp.

TRef [2/2]

typedef CRef_ext CSeq_ext_Base::TRef

Definition at line 153 of file Seq_ext_.hpp.

TRefnum

typedef TSignedSeqPos CNum_cont_Base::TRefnum

Definition at line 82 of file Num_cont_.hpp.

TReftype

typedef int CPubdesc_Base::TReftype

Definition at line 112 of file Pubdesc_.hpp.

TRegion [1/2]

typedef CSeq_loc CAnnotdesc_Base::TRegion

Definition at line 170 of file Annotdesc_.hpp.

TRegion [2/2]

typedef string CSeqdesc_Base::TRegion

Definition at line 202 of file Seqdesc_.hpp.

TRelease

typedef string CTextannot_id_Base::TRelease

Definition at line 93 of file Textannot_id_.hpp.

TReplaced_by

typedef CSeq_hist_rec CSeq_hist_Base::TReplaced_by

Definition at line 250 of file Seq_hist_.hpp.

TReplaces

typedef CSeq_hist_rec CSeq_hist_Base::TReplaces

Definition at line 249 of file Seq_hist_.hpp.

TRepr

typedef ERepr CSeq_inst_Base::TRepr

Definition at line 145 of file Seq_inst_.hpp.

TSeg

typedef CSeg_ext CSeq_ext_Base::TSeg

Definition at line 152 of file Seq_ext_.hpp.

TSeq_data [1/2]

typedef CSeq_data CSeq_inst_Base::TSeq_data

Definition at line 151 of file Seq_inst_.hpp.

TSeq_data [2/2]

typedef CSeq_data CSeq_literal_Base::TSeq_data

Definition at line 88 of file Seq_literal_.hpp.

TSeq_raw

typedef string CPubdesc_Base::TSeq_raw

Definition at line 109 of file Pubdesc_.hpp.

TSeq_table

typedef CSeq_table CSeq_annot_Base::C_Data::TSeq_table

Definition at line 198 of file Seq_annot_.hpp.

TSource

typedef CBioSource CSeqdesc_Base::TSource

Definition at line 212 of file Seqdesc_.hpp.

TSp

typedef CSP_block CSeqdesc_Base::TSp

Definition at line 204 of file Seqdesc_.hpp.

TSrc

typedef CSeq_id CAnnotdesc_Base::TSrc

Definition at line 168 of file Annotdesc_.hpp.

TStrand

typedef EStrand CSeq_inst_Base::TStrand

Definition at line 150 of file Seq_inst_.hpp.

TTech

typedef int CMolInfo_Base::TTech

Definition at line 171 of file MolInfo_.hpp.

TTechexp

typedef string CMolInfo_Base::TTechexp

Definition at line 172 of file MolInfo_.hpp.

TTitle [1/2]

typedef string CAnnotdesc_Base::TTitle

Definition at line 162 of file Annotdesc_.hpp.

TTitle [2/2]

typedef string CSeqdesc_Base::TTitle

Definition at line 194 of file Seqdesc_.hpp.

TTopology

typedef ETopology CSeq_inst_Base::TTopology

Definition at line 149 of file Seq_inst_.hpp.

TType [1/3]

typedef int CLinkage_evidence_Base::TType

Definition at line 99 of file Linkage_evidence_.hpp.

TType [2/3]

typedef EType CNum_ref_Base::TType

Definition at line 96 of file Num_ref_.hpp.

TType [3/3]

typedef int CSeq_gap_Base::TType

Definition at line 116 of file Seq_gap_.hpp.

TUnits

typedef string CNum_real_Base::TUnits

Definition at line 88 of file Num_real_.hpp.

TUpdate_date [1/2]

typedef CDate CAnnotdesc_Base::TUpdate_date

Definition at line 167 of file Annotdesc_.hpp.

TUpdate_date [2/2]

typedef CDate CSeqdesc_Base::TUpdate_date

Definition at line 208 of file Seqdesc_.hpp.

TUser [1/2]

typedef CUser_object CAnnotdesc_Base::TUser

Definition at line 165 of file Annotdesc_.hpp.

TUser [2/2]

typedef CUser_object CSeqdesc_Base::TUser

Definition at line 203 of file Seqdesc_.hpp.

TVersion

typedef int CTextannot_id_Base::TVersion

Definition at line 94 of file Textannot_id_.hpp.

Enumeration Type Documentation

E_Choice [1/9]

enum CAnnot_id_Base::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Local
e_Ncbi
e_General
e_Other

Definition at line 88 of file Annot_id_.hpp.

E_Choice [2/9]

enum CAnnotdesc_Base::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Name	a short name for this collection
e_Title	a title for this collection
e_Comment	a more extensive comment
e_Pub	a reference to the publication
e_User	user defined object
e_Create_date	date entry first created/released
e_Update_date	date of last update
e_Src	source sequence from which annot came
e_Align	definition of the SeqAligns
e_Region	all contents cover this region

Definition at line 95 of file Annotdesc_.hpp.

E_Choice [3/9]

enum CDelta_seq_Base::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Loc	point to a sequence
e_Literal	a piece of sequence

Definition at line 87 of file Delta_seq_.hpp.

E_Choice [4/9]

enum CNumbering_Base::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Cont	continuous numbering
e_Enum	enumerated names for residues
e_Ref	by reference to another sequence
e_Real	supports mapping to a float system

Definition at line 90 of file Numbering_.hpp.

E_Choice [5/9]

enum CSeq_annot_Base::C_Data::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Ftable
e_Align
e_Graph
e_Ids	used for communication between tools
e_Locs	used for communication between tools
e_Seq_table

Definition at line 131 of file Seq_annot_.hpp.

E_Choice [6/9]

enum CSeq_data_Base::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Iupacna	IUPAC 1 letter nuc acid code.
e_Iupacaa	IUPAC 1 letter amino acid code.
e_Ncbi2na	2 bit nucleic acid code
e_Ncbi4na	4 bit nucleic acid code
e_Ncbi8na	8 bit extended nucleic acid code
e_Ncbipna	nucleic acid probabilities
e_Ncbi8aa	8 bit extended amino acid codes
e_Ncbieaa	extended ASCII 1 letter aa codes
e_Ncbipaa	amino acid probabilities
e_Ncbistdaa	consecutive codes for std aas
e_Gap	gap types

Definition at line 102 of file Seq_data_.hpp.

E_Choice [7/9]

enum CSeq_ext_Base::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Seg	segmented sequences
e_Ref	hot link to another sequence (a view)
e_Map	ordered map of markers
e_Delta

Definition at line 92 of file Seq_ext_.hpp.

E_Choice [8/9]

enum CSeq_hist_Base::C_Deleted::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Bool
e_Date

Definition at line 113 of file Seq_hist_.hpp.

E_Choice [9/9]

enum CSeqdesc_Base::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Mol_type	type of molecule
e_Modif	modifiers
e_Method	sequencing method
e_Name	a name for this sequence
e_Title	a title for this sequence
e_Org	if all from one organism
e_Comment	a more extensive comment
e_Num	a numbering system
e_Maploc	map location of this sequence
e_Pir	PIR specific info.
e_Genbank	GenBank specific info.
e_Pub	a reference to the publication
e_Region	overall region (globin locus)
e_User	user defined object
e_Sp	SWISSPROT specific info.
e_Dbxref	xref to other databases
e_Embl	EMBL specific information.
e_Create_date	date entry first created/released
e_Update_date	date of last update
e_Prf	PRF specific information.
e_Pdb	PDB specific information.
e_Het	cofactor, etc associated but not bound
e_Source	source of materials, includes Org-ref
e_Molinfo	info on the molecule and techniques
e_Modelev	model evidence for XM records

Definition at line 109 of file Seqdesc_.hpp.

E_ChoiceStopper [1/9]

enum CAnnot_id_Base::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Other+1

Definition at line 96 of file Annot_id_.hpp.

E_ChoiceStopper [2/9]

enum CAnnotdesc_Base::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Region+1

Definition at line 109 of file Annotdesc_.hpp.

E_ChoiceStopper [3/9]

enum CDelta_seq_Base::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Literal+1

Definition at line 93 of file Delta_seq_.hpp.

E_ChoiceStopper [4/9]

enum CNumbering_Base::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Real+1

Definition at line 98 of file Numbering_.hpp.

E_ChoiceStopper [5/9]

enum CSeq_annot_Base::C_Data::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Seq_table+1

Definition at line 141 of file Seq_annot_.hpp.

E_ChoiceStopper [6/9]

enum CSeq_data_Base::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Gap+1

Definition at line 117 of file Seq_data_.hpp.

E_ChoiceStopper [7/9]

enum CSeq_ext_Base::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Delta+1

Definition at line 100 of file Seq_ext_.hpp.

E_ChoiceStopper [8/9]

enum CSeq_hist_Base::C_Deleted::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Date+1

Definition at line 119 of file Seq_hist_.hpp.

E_ChoiceStopper [9/9]

enum CSeqdesc_Base::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Modelev+1

Definition at line 138 of file Seqdesc_.hpp.

E_memberIndex [1/16]

enum CAlign_def_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_align_type
e_ids

Definition at line 104 of file Align_def_.hpp.

E_memberIndex [2/16]

enum CBioseq_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_id
e_descr
e_inst
e_annot

Definition at line 100 of file Bioseq_.hpp.

E_memberIndex [3/16]

enum CLinkage_evidence_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_type

Definition at line 102 of file Linkage_evidence_.hpp.

E_memberIndex [4/16]

enum CMolInfo_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_biomol
e_tech
e_techexp
e_completeness
e_gbmoltype

Definition at line 177 of file MolInfo_.hpp.

E_memberIndex [5/16]

enum CNum_cont_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_refnum
e_has_zero
e_ascending

Definition at line 87 of file Num_cont_.hpp.

E_memberIndex [6/16]

enum CNum_enum_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_num
e_names

Definition at line 91 of file Num_enum_.hpp.

E_memberIndex [7/16]

enum CNum_real_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_a
e_b
e_units

Definition at line 91 of file Num_real_.hpp.

E_memberIndex [8/16]

enum CNum_ref_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_type
e_aligns

Definition at line 100 of file Num_ref_.hpp.

E_memberIndex [9/16]

enum CPubdesc_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_pub
e_name
e_fig
e_num
e_numexc
e_poly_a
e_maploc
e_seq_raw
e_align_group
e_comment
e_reftype

Definition at line 115 of file Pubdesc_.hpp.

E_memberIndex [10/16]

enum CSeq_annot_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_id
e_db
e_name
e_desc
e_data

Definition at line 363 of file Seq_annot_.hpp.

E_memberIndex [11/16]

enum CSeq_gap_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_type
e_linkage
e_linkage_evidence

Definition at line 121 of file Seq_gap_.hpp.

E_memberIndex [12/16]

enum CSeq_hist_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_assembly
e_replaces
e_replaced_by
e_deleted

Definition at line 254 of file Seq_hist_.hpp.

E_memberIndex [13/16]

enum CSeq_hist_rec_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_date
e_ids

Definition at line 94 of file Seq_hist_rec_.hpp.

E_memberIndex [14/16]

enum CSeq_inst_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_repr
e_mol
e_length
e_fuzz
e_topology
e_strand
e_seq_data
e_ext
e_hist

Definition at line 156 of file Seq_inst_.hpp.

E_memberIndex [15/16]

enum CSeq_literal_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_length
e_fuzz
e_seq_data

Definition at line 91 of file Seq_literal_.hpp.

E_memberIndex [16/16]

enum CTextannot_id_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_name
e_accession
e_release
e_version

Definition at line 97 of file Textannot_id_.hpp.

EAlign_type

enum CAlign_def_Base::EAlign_type

class of align Seq-annot

Enumerator
eAlign_type_ref	set of alignments to the same sequence
eAlign_type_alt	set of alternate alignments of the same seqs
eAlign_type_blocks	set of aligned blocks in the same seqs
eAlign_type_other

Definition at line 89 of file Align_def_.hpp.

EBiomol

enum CMolInfo_Base::EBiomol

Enumerator
eBiomol_unknown
eBiomol_genomic
eBiomol_pre_RNA	precursor RNA of any sort really
eBiomol_mRNA
eBiomol_rRNA
eBiomol_tRNA
eBiomol_snRNA
eBiomol_scRNA
eBiomol_peptide
eBiomol_other_genetic	other genetic material
eBiomol_genomic_mRNA	reported a mix of genomic and cdna sequence
eBiomol_cRNA	viral RNA genome copy intermediate
eBiomol_snoRNA	small nucleolar RNA
eBiomol_transcribed_RNA	transcribed RNA other than existing classes
eBiomol_ncRNA
eBiomol_tmRNA
eBiomol_other

Definition at line 99 of file MolInfo_.hpp.

ECompleteness

enum CMolInfo_Base::ECompleteness

Enumerator
eCompleteness_unknown
eCompleteness_complete	complete biological entity
eCompleteness_partial	partial but no details given
eCompleteness_no_left	missing 5' or NH3 end
eCompleteness_no_right	missing 3' or COOH end
eCompleteness_no_ends	missing both ends
eCompleteness_has_left	5' or NH3 end present
eCompleteness_has_right	3' or COOH end present
eCompleteness_other

Definition at line 154 of file MolInfo_.hpp.

EDb

enum CSeq_annot_Base::EDb

source of annotation

Enumerator
eDb_genbank
eDb_embl
eDb_ddbj
eDb_pir
eDb_sp
eDb_bbone
eDb_pdb
eDb_other

Definition at line 98 of file Seq_annot_.hpp.

EGIBB_method

enum EGIBB_method

sequencing methods

Access to EGIBB_method's attributes (values, names) as defined in spec.

Enumerator
eGIBB_method_concept_trans	conceptual translation
eGIBB_method_seq_pept	peptide was sequenced
eGIBB_method_both	concept transl. w/ partial pept. seq.
eGIBB_method_seq_pept_overlap	sequenced peptide, ordered by overlap
eGIBB_method_seq_pept_homol	sequenced peptide, ordered by homology
eGIBB_method_concept_trans_a	conceptual transl. supplied by author
eGIBB_method_other

Definition at line 64 of file GIBB_method_.hpp.

EGIBB_mod

enum EGIBB_mod

GenInfo Backbone modifiers.

Access to EGIBB_mod's attributes (values, names) as defined in spec.

Enumerator
eGIBB_mod_dna
eGIBB_mod_rna
eGIBB_mod_extrachrom
eGIBB_mod_plasmid
eGIBB_mod_mitochondrial
eGIBB_mod_chloroplast
eGIBB_mod_kinetoplast
eGIBB_mod_cyanelle
eGIBB_mod_synthetic
eGIBB_mod_recombinant
eGIBB_mod_partial
eGIBB_mod_complete
eGIBB_mod_mutagen	subject of mutagenesis ?
eGIBB_mod_natmut	natural mutant ?
eGIBB_mod_transposon
eGIBB_mod_insertion_seq
eGIBB_mod_no_left	missing left end (5' for na, NH2 for aa)
eGIBB_mod_no_right	missing right end (3' or COOH)
eGIBB_mod_macronuclear
eGIBB_mod_proviral
eGIBB_mod_est	expressed sequence tag
eGIBB_mod_sts	sequence tagged site
eGIBB_mod_survey	one pass survey sequence
eGIBB_mod_chromoplast
eGIBB_mod_genemap	is a genetic map
eGIBB_mod_restmap	is an ordered restriction map
eGIBB_mod_physmap	is a physical map (not ordered restriction map)
eGIBB_mod_other

Definition at line 64 of file GIBB_mod_.hpp.

EGIBB_mol

enum EGIBB_mol

type of molecule represented

Access to EGIBB_mol's attributes (values, names) as defined in spec.

Enumerator
eGIBB_mol_unknown
eGIBB_mol_genomic
eGIBB_mol_pre_mRNA	precursor RNA of any sort really
eGIBB_mol_mRNA
eGIBB_mol_rRNA
eGIBB_mol_tRNA
eGIBB_mol_snRNA
eGIBB_mol_scRNA
eGIBB_mol_peptide
eGIBB_mol_other_genetic	other genetic material
eGIBB_mol_genomic_mRNA	reported a mix of genomic and cdna sequence
eGIBB_mol_other

Definition at line 64 of file GIBB_mol_.hpp.

ELinkage

enum CSeq_gap_Base::ELinkage

Enumerator
eLinkage_unlinked
eLinkage_linked
eLinkage_other

Definition at line 106 of file Seq_gap_.hpp.

EMol

enum CSeq_inst_Base::EMol

molecule class in living organism

Enumerator
eMol_not_set	> cdna = rna
eMol_dna
eMol_rna
eMol_aa
eMol_na	just a nucleic acid
eMol_other

Definition at line 108 of file Seq_inst_.hpp.

EReftype

enum CPubdesc_Base::EReftype

type of reference in a GenBank record

Enumerator
eReftype_seq	refers to sequence
eReftype_sites	refers to unspecified features
eReftype_feats	refers to specified features
eReftype_no_target	nothing specified (EMBL)

Definition at line 91 of file Pubdesc_.hpp.

ERepr

enum CSeq_inst_Base::ERepr

representation class

Enumerator
eRepr_not_set	empty
eRepr_virtual	no seq data
eRepr_raw	continuous sequence
eRepr_seg	segmented sequence
eRepr_const	constructed sequence
eRepr_ref	reference to another sequence
eRepr_consen	consensus sequence or pattern
eRepr_map	ordered map of any kind
eRepr_delta	sequence made by changes (delta) to others
eRepr_other

Definition at line 91 of file Seq_inst_.hpp.

EStrand

enum CSeq_inst_Base::EStrand

strandedness in living organism

Enumerator
eStrand_not_set
eStrand_ss	single strand
eStrand_ds	double strand
eStrand_mixed
eStrand_other	default ds for DNA, ss for RNA, pept

Definition at line 133 of file Seq_inst_.hpp.

ETech

enum CMolInfo_Base::ETech

Enumerator
eTech_unknown
eTech_standard	standard sequencing
eTech_est	Expressed Sequence Tag.
eTech_sts	Sequence Tagged Site.
eTech_survey	one-pass genomic sequence
eTech_genemap	from genetic mapping techniques
eTech_physmap	from physical mapping techniques
eTech_derived	derived from other data, not a primary entity
eTech_concept_trans	conceptual translation
eTech_seq_pept	peptide was sequenced
eTech_both	concept transl. w/ partial pept. seq.
eTech_seq_pept_overlap	sequenced peptide, ordered by overlap
eTech_seq_pept_homol	sequenced peptide, ordered by homology
eTech_concept_trans_a	conceptual transl. supplied by author
eTech_htgs_1	unordered High Throughput sequence contig
eTech_htgs_2	ordered High Throughput sequence contig
eTech_htgs_3	finished High Throughput sequence
eTech_fli_cdna	full length insert cDNA
eTech_htgs_0	single genomic reads for coordination
eTech_htc	high throughput cDNA
eTech_wgs	whole genome shotgun sequencing
eTech_barcode	barcode of life project
eTech_composite_wgs_htgs	composite of WGS and HTGS
eTech_tsa	transcriptome shotgun assembly
eTech_targeted	targeted locus sets/studies
eTech_other	use Source.techexp

Definition at line 122 of file MolInfo_.hpp.

ETopology

enum CSeq_inst_Base::ETopology

topology of molecule

Enumerator
eTopology_not_set
eTopology_linear
eTopology_circular
eTopology_tandem	some part of tandem repeat
eTopology_other

Definition at line 121 of file Seq_inst_.hpp.

EType [1/3]

enum CLinkage_evidence_Base::EType

(

void

)

Enumerator
eType_paired_ends
eType_align_genus
eType_align_xgenus
eType_align_trnscpt
eType_within_clone
eType_clone_contig
eType_map
eType_strobe
eType_unspecified
eType_pcr
eType_proximity_ligation
eType_other

Definition at line 80 of file Linkage_evidence_.hpp.

EType [2/3]

enum CNum_ref_Base::EType

(

void

)

type of reference

Enumerator
eType_not_set
eType_sources	by segmented or const seq sources
eType_aligns	by alignments given below

Definition at line 86 of file Num_ref_.hpp.

EType [3/3]

enum CSeq_gap_Base::EType

(

void

)

Enumerator
eType_unknown
eType_fragment	Deprecated. Used only for AGP 1.1.
eType_clone	Deprecated. Used only for AGP 1.1.
eType_short_arm
eType_heterochromatin
eType_centromere
eType_telomere
eType_repeat
eType_contig
eType_scaffold
eType_contamination
eType_other

Definition at line 88 of file Seq_gap_.hpp.

Function Documentation

C_Data() [1/2]

CSeq_annot_Base::C_Data::C_Data ( const C_Data &  )

private

C_Data() [2/2]

END_CHOICE_INFO CSeq_annot_Base::C_Data::C_Data

(

void

)

Definition at line 194 of file Seq_annot_.cpp.

C_Deleted() [1/2]

CSeq_hist_Base::C_Deleted::C_Deleted ( const C_Deleted &  )

private

C_Deleted() [2/2]

END_CHOICE_INFO CSeq_hist_Base::C_Deleted::C_Deleted

(

void

)

Definition at line 139 of file Seq_hist_.cpp.

CAlign_def() [1/2]

CAlign_def::CAlign_def ( const CAlign_def &  value )

private

CAlign_def() [2/2]

CAlign_def::CAlign_def ( void  )

inline

Definition at line 86 of file Align_def.hpp.

CAlign_def_Base() [1/2]

CAlign_def_Base::CAlign_def_Base ( const CAlign_def_Base &  )

private

CAlign_def_Base() [2/2]

END_CLASS_INFO CAlign_def_Base::CAlign_def_Base

(

void

)

Definition at line 86 of file Align_def_.cpp.

References CAlign_def_Base::m_set_State.

CanGet() [1/5]

bool CAnnot_descr_Base::CanGet ( void  ) const

inline

Check if it is safe to call Get method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 158 of file Annot_descr_.hpp.

Referenced by CBedObjectLoader::Execute(), CVcfObjectLoader::Execute(), CWigObjectLoader::Execute(), NSnp::GetCreateTime(), CTableAnnotDataSource::x_GetColumnMetaInfo(), and CAttribTableColumnIdPanel::x_TableReaderCommon().

CanGet() [2/5]

bool CDelta_ext_Base::CanGet ( void  ) const

inline

Check if it is safe to call Get method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 158 of file Delta_ext_.hpp.

CanGet() [3/5]

bool CMap_ext_Base::CanGet ( void  ) const

inline

Check if it is safe to call Get method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 158 of file Map_ext_.hpp.

CanGet() [4/5]

bool CSeg_ext_Base::CanGet ( void  ) const

inline

Check if it is safe to call Get method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 158 of file Seg_ext_.hpp.

CanGet() [5/5]

bool CSeq_descr_Base::CanGet ( void  ) const

inline

Check if it is safe to call Get method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 160 of file Seq_descr_.hpp.

Referenced by CDiscrepancyContext::AutofixBioseq(), CDiscrepancyContext::AutofixBioseq_set(), CDiscrepancyContext::AutofixSeq_descr(), IAlignRowHandle::GetOrgLabel(), CDiscrepancyContext::PopulateBioseq(), CDiscrepancyContext::PopulateSeqSet(), CGffFeatureContext::xAssignSequenceHasBioSource(), and CGffFeatureContext::xAssignSequenceIsGenomicRecord().

CanGetA()

bool CNum_real_Base::CanGetA ( void  ) const

inline

Check if it is safe to call GetA method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 248 of file Num_real_.hpp.

References CNum_real_Base::IsSetA().

Referenced by CNum_real_Base::GetA().

CanGetAccession()

bool CTextannot_id_Base::CanGetAccession ( void  ) const

inline

Check if it is safe to call GetAccession method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 340 of file Textannot_id_.hpp.

References CTextannot_id_Base::IsSetAccession().

Referenced by CTextannot_id_Base::GetAccession().

CanGetAlign_group()

bool CPubdesc_Base::CanGetAlign_group ( void  ) const

inline

Check if it is safe to call GetAlign_group method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 932 of file Pubdesc_.hpp.

References CPubdesc_Base::IsSetAlign_group().

Referenced by CPubdesc_Base::GetAlign_group().

CanGetAlign_type()

bool CAlign_def_Base::CanGetAlign_type ( void  ) const

inline

Check if it is safe to call GetAlign_type method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 214 of file Align_def_.hpp.

References CAlign_def_Base::IsSetAlign_type().

Referenced by CAlign_def_Base::GetAlign_type().

CanGetAligns()

bool CNum_ref_Base::CanGetAligns ( void  ) const

inline

Check if it is safe to call GetAligns method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 262 of file Num_ref_.hpp.

References CNum_ref_Base::IsSetAligns().

Referenced by CNum_ref_Base::GetAligns().

CanGetAnnot()

bool CBioseq_Base::CanGetAnnot ( void  ) const

inline

Check if it is safe to call GetAnnot method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 360 of file Bioseq_.hpp.

Referenced by CAttachedHandles::Attach().

CanGetAscending()

bool CNum_cont_Base::CanGetAscending ( void  ) const

inline

Check if it is safe to call GetAscending method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 353 of file Num_cont_.hpp.

CanGetAssembly()

bool CSeq_hist_Base::CanGetAssembly ( void  ) const

inline

Check if it is safe to call GetAssembly method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 506 of file Seq_hist_.hpp.

Referenced by CBioseq::GetNonLocalId(), and CCommonComponentScorer::x_GetSeqHistCompList().

CanGetB()

bool CNum_real_Base::CanGetB ( void  ) const

inline

Check if it is safe to call GetB method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 295 of file Num_real_.hpp.

References CNum_real_Base::IsSetB().

Referenced by CNum_real_Base::GetB().

CanGetBiomol()

bool CMolInfo_Base::CanGetBiomol ( void  ) const

inline

Check if it is safe to call GetBiomol method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 428 of file MolInfo_.hpp.

Referenced by CValidError_imp::IsOtherDNA(), CFeatureGenerator::SImplementation::x_SetQualForGapFilledModel(), and CRNAValidator::x_ValidateRnaProductType().

CanGetComment()

bool CPubdesc_Base::CanGetComment ( void  ) const

inline

Check if it is safe to call GetComment method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 979 of file Pubdesc_.hpp.

References CPubdesc_Base::IsSetComment().

Referenced by CPubdesc_Base::GetComment(), and s_FilterPubdesc().

CanGetCompleteness()

bool CMolInfo_Base::CanGetCompleteness ( void  ) const

inline

Check if it is safe to call GetCompleteness method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 575 of file MolInfo_.hpp.

Referenced by CCommentItem::GetStringForMolinfo(), and CCdregionValidator::x_ValidateCDSPartial().

CanGetData()

bool CSeq_annot_Base::CanGetData ( void  ) const

inline

Check if it is safe to call GetData method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 867 of file Seq_annot_.hpp.

Referenced by s_GetSeqAnnotChoiceMask(), CFormatGuessEx::x_TryBed15(), and CFormatGuessEx::x_TryWiggle().

CanGetDate()

bool CSeq_hist_rec_Base::CanGetDate ( void  ) const

inline

Check if it is safe to call GetDate method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 203 of file Seq_hist_rec_.hpp.

References CSeq_hist_rec_Base::IsSetDate().

Referenced by CSeq_hist_rec_Base::GetDate().

CanGetDb()

bool CSeq_annot_Base::CanGetDb ( void  ) const

inline

Check if it is safe to call GetDb method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 752 of file Seq_annot_.hpp.

References CSeq_annot_Base::IsSetDb().

Referenced by CSeq_annot_Base::GetDb(), and CSeq_annot_Handle::Seq_annot_CanGetDb().

CanGetDeleted()

bool CSeq_hist_Base::CanGetDeleted ( void  ) const

inline

Check if it is safe to call GetDeleted method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 573 of file Seq_hist_.hpp.

References CSeq_hist_Base::IsSetDeleted().

Referenced by CSeq_hist_Base::GetDeleted().

CanGetDesc()

bool CSeq_annot_Base::CanGetDesc ( void  ) const

inline

Check if it is safe to call GetDesc method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 846 of file Seq_annot_.hpp.

References CSeq_annot_Base::IsSetDesc().

Referenced by CGBDocument::AddItems(), CVcfObjectLoader::Execute(), CSeq_annot_Base::GetDesc(), s_CollapseProjectFolder(), s_IsMatchById(), CSeq_annot_Handle::Seq_annot_CanGetDesc(), CUCSCRegionWriter::WriteAnnot(), CBedWriter::WriteAnnot(), CTableAnnotDataSource::x_GetColumnMetaInfo(), CSGAnnotJob::x_PercentileButNotMax(), CWiggleWriter::xWriteAnnotGraphs(), and CWiggleWriter::xWriteAnnotTable().

CanGetDescr()

bool CBioseq_Base::CanGetDescr ( void  ) const

inline

Check if it is safe to call GetDescr method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 309 of file Bioseq_.hpp.

References CBioseq_Base::IsSetDescr().

Referenced by CDiscrepancyContext::AutofixBioseq(), BOOST_AUTO_TEST_CASE(), CSeqEntrySource::CSeqEntrySource(), get_title(), CBioseq_Base::GetDescr(), CBlastQuerySourceBioseqSet::GetSegmentInfo(), CMolinfo_field::GetSequenceQualFromBioseq(), CBlastQuerySourceBioseqSet::GetTitle(), CDiscrepancyContext::PopulateBioseq(), s_GetTitle(), s_HasDefline(), s_HasTitle(), CWriteDB_Impl::x_BuildDeflinesFromBioseq(), CWriteDB_Impl::x_GetBioseqBinaryHeader(), and CWriteDB_Impl::x_GetFastaReaderDeflines().

CanGetExt()

bool CSeq_inst_Base::CanGetExt ( void  ) const

inline

Check if it is safe to call GetExt method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 832 of file Seq_inst_.hpp.

References CSeq_inst_Base::IsSetExt().

Referenced by CSequenceTrack::CSequenceTrack(), GetDeltaSeqForPosition(), CSeq_inst_Base::GetExt(), HasAssemblyOrNullGap(), CValidError_bioseq::HasBadWGSGap(), CValidError_bioseq::ReportBadAssemblyGap(), s_GetFlankingGapTypes(), CUnorderedSplitter::SplitId(), CUnorderedSplitter::SplitLoc(), and CValidError_bioseq::x_IsDeltaLitOnly().

CanGetFig()

bool CPubdesc_Base::CanGetFig ( void  ) const

inline

Check if it is safe to call GetFig method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 676 of file Pubdesc_.hpp.

References CPubdesc_Base::IsSetFig().

Referenced by CPubdesc_Base::GetFig().

CanGetFuzz() [1/2]

bool CSeq_inst_Base::CanGetFuzz ( void  ) const

inline

Check if it is safe to call GetFuzz method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 693 of file Seq_inst_.hpp.

References CSeq_inst_Base::IsSetFuzz().

Referenced by CSeq_inst_Base::GetFuzz().

CanGetFuzz() [2/2]

bool CSeq_literal_Base::CanGetFuzz ( void  ) const

inline

Check if it is safe to call GetFuzz method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 295 of file Seq_literal_.hpp.

References CSeq_literal_Base::IsSetFuzz().

Referenced by GetDeltaSeqSummary(), CSeq_literal_Base::GetFuzz(), and CSeqMap::x_Add().

CanGetGbmoltype()

bool CMolInfo_Base::CanGetGbmoltype ( void  ) const

inline

Check if it is safe to call GetGbmoltype method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 625 of file MolInfo_.hpp.

References CMolInfo_Base::IsSetGbmoltype().

Referenced by CMolInfo_Base::GetGbmoltype().

CanGetHas_zero()

bool CNum_cont_Base::CanGetHas_zero ( void  ) const

inline

Check if it is safe to call GetHas_zero method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 303 of file Num_cont_.hpp.

CanGetHist()

bool CSeq_inst_Base::CanGetHist ( void  ) const

inline

Check if it is safe to call GetHist method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 853 of file Seq_inst_.hpp.

References CSeq_inst_Base::IsSetHist().

Referenced by CValidError_bioseq::CheckTpaHistory(), CSeq_inst_Base::GetHist(), and CBioseq::GetNonLocalId().

CanGetId() [1/2]

bool CBioseq_Base::CanGetId ( void  ) const

inline

Check if it is safe to call GetId method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 284 of file Bioseq_.hpp.

Referenced by CBuildDatabase::AddSequences(), GetSeqsStatus(), CwxDemoAlignTableFrame::LoadFile(), CwxDemoFeatureTableFrame::LoadFile(), CSegregateSetsBase::TakeFromSet(), and CWriteDB_Impl::x_BuildDeflinesFromBioseq().

CanGetId() [2/2]

bool CSeq_annot_Base::CanGetId ( void  ) const

inline

Check if it is safe to call GetId method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 727 of file Seq_annot_.hpp.

Referenced by CSeq_annot_Handle::Seq_annot_CanGetId().

CanGetIds() [1/2]

bool CAlign_def_Base::CanGetIds ( void  ) const

inline

Check if it is safe to call GetIds method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 261 of file Align_def_.hpp.

CanGetIds() [2/2]

bool CSeq_hist_rec_Base::CanGetIds ( void  ) const

inline

Check if it is safe to call GetIds method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 224 of file Seq_hist_rec_.hpp.

CanGetInst()

bool CBioseq_Base::CanGetInst ( void  ) const

inline

Check if it is safe to call GetInst method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 330 of file Bioseq_.hpp.

Referenced by CValidError_bioseq::CheckTpaHistory(), CBlastBioseqMaker::IsEmptyBioseq(), RetrieveGi555WithTimeOut(), RetrieveLargeProteinWithTimeOut(), RetrievePartsOfLargeChromosome(), CSeqDBDemo_SeqidToBioseq::Run(), CWinMaskDemoApplication::Run(), CWriteDB_Impl::x_ComputeSeqLength(), CWriteDB_Impl::x_CookSequence(), and CPrimeCacheApplication::x_StripSeqEntry().

CanGetLength() [1/2]

bool CSeq_inst_Base::CanGetLength ( void  ) const

inline

Check if it is safe to call GetLength method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 646 of file Seq_inst_.hpp.

References CSeq_inst_Base::IsSetLength().

Referenced by CSeq_inst_Base::GetLength(), CBlastBioseqMaker::IsEmptyBioseq(), CBlastFormat::PrintReport(), CSeqDBDemo_SeqidToBioseq::Run(), CWinMaskDemoApplication::Run(), s_BasicValidation(), TrimSequenceAndAnnotation(), and CAlignFormatUtil::x_AcknowledgeBlastSequence().

CanGetLength() [2/2]

bool CSeq_literal_Base::CanGetLength ( void  ) const

inline

Check if it is safe to call GetLength method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 248 of file Seq_literal_.hpp.

References CSeq_literal_Base::IsSetLength().

Referenced by GetDeltaSeqSummary(), CSeq_literal_Base::GetLength(), s_FixBioseqDeltas(), s_NsAreGaps(), CValidError_bioseq::ValidateDelta(), and CContigItem::x_GatherInfo().

CanGetLinkage()

bool CSeq_gap_Base::CanGetLinkage ( void  ) const

inline

Check if it is safe to call GetLinkage method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 316 of file Seq_gap_.hpp.

References CSeq_gap_Base::IsSetLinkage().

Referenced by CFastaOstream::GetGapModText(), and CSeq_gap_Base::GetLinkage().

CanGetLinkage_evidence()

bool CSeq_gap_Base::CanGetLinkage_evidence ( void  ) const

inline

Check if it is safe to call GetLinkage_evidence method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 363 of file Seq_gap_.hpp.

Referenced by CFastaOstream::GetGapModText().

CanGetMaploc()

bool CPubdesc_Base::CanGetMaploc ( void  ) const

inline

Check if it is safe to call GetMaploc method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 838 of file Pubdesc_.hpp.

References CPubdesc_Base::IsSetMaploc().

Referenced by CPubdesc_Base::GetMaploc().

CanGetMol()

bool CSeq_inst_Base::CanGetMol ( void  ) const

inline

Check if it is safe to call GetMol method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 599 of file Seq_inst_.hpp.

References CSeq_inst_Base::IsSetMol().

Referenced by CWriteDB_Impl::AddSequence(), CSeq_inst_Base::GetMol(), CAutoDef::GetOneDefLine(), and CBlastBioseqMaker::IsEmptyBioseq().

CanGetName() [1/3]

bool CPubdesc_Base::CanGetName ( void  ) const

inline

Check if it is safe to call GetName method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 629 of file Pubdesc_.hpp.

References CPubdesc_Base::IsSetName().

Referenced by CPubdesc_Base::GetName().

CanGetName() [2/3]

bool CSeq_annot_Base::CanGetName ( void  ) const

inline

Check if it is safe to call GetName method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 799 of file Seq_annot_.hpp.

References CSeq_annot_Base::IsSetName().

Referenced by CSeq_annot_Base::GetName(), and CSeq_annot_Handle::Seq_annot_CanGetName().

CanGetName() [3/3]

bool CTextannot_id_Base::CanGetName ( void  ) const

inline

Check if it is safe to call GetName method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 293 of file Textannot_id_.hpp.

References CTextannot_id_Base::IsSetName().

Referenced by CTextannot_id_Base::GetName().

CanGetNames()

bool CNum_enum_Base::CanGetNames ( void  ) const

inline

Check if it is safe to call GetNames method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 249 of file Num_enum_.hpp.

CanGetNum() [1/2]

bool CNum_enum_Base::CanGetNum ( void  ) const

inline

Check if it is safe to call GetNum method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 202 of file Num_enum_.hpp.

References CNum_enum_Base::IsSetNum().

Referenced by CNum_enum_Base::GetNum().

CanGetNum() [2/2]

bool CPubdesc_Base::CanGetNum ( void  ) const

inline

Check if it is safe to call GetNum method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 723 of file Pubdesc_.hpp.

References CPubdesc_Base::IsSetNum().

Referenced by CPubdesc_Base::GetNum().

CanGetNumexc()

bool CPubdesc_Base::CanGetNumexc ( void  ) const

inline

Check if it is safe to call GetNumexc method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 744 of file Pubdesc_.hpp.

References CPubdesc_Base::IsSetNumexc().

Referenced by CPubdesc_Base::GetNumexc().

CanGetPoly_a()

bool CPubdesc_Base::CanGetPoly_a ( void  ) const

inline

Check if it is safe to call GetPoly_a method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 791 of file Pubdesc_.hpp.

References CPubdesc_Base::IsSetPoly_a().

Referenced by CPubdesc_Base::GetPoly_a().

CanGetPub()

bool CPubdesc_Base::CanGetPub ( void  ) const

inline

Check if it is safe to call GetPub method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 599 of file Pubdesc_.hpp.

Referenced by CDiscrepancyVisitorImpl< _Name >::Autofix(), and CReferenceItem::x_GatherRemark().

CanGetRefnum()

bool CNum_cont_Base::CanGetRefnum ( void  ) const

inline

Check if it is safe to call GetRefnum method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 253 of file Num_cont_.hpp.

CanGetReftype()

bool CPubdesc_Base::CanGetReftype ( void  ) const

inline

Check if it is safe to call GetReftype method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1026 of file Pubdesc_.hpp.

CanGetRelease()

bool CTextannot_id_Base::CanGetRelease ( void  ) const

inline

Check if it is safe to call GetRelease method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 387 of file Textannot_id_.hpp.

References CTextannot_id_Base::IsSetRelease().

Referenced by CTextannot_id_Base::GetRelease().

CanGetReplaced_by()

bool CSeq_hist_Base::CanGetReplaced_by ( void  ) const

inline

Check if it is safe to call GetReplaced_by method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 552 of file Seq_hist_.hpp.

References CSeq_hist_Base::IsSetReplaced_by().

Referenced by CSeq_hist_Base::GetReplaced_by(), CFlatGatherer::x_HistoryComments(), and CGenbankFormatter::x_LocusHtmlPrefix().

CanGetReplaces()

bool CSeq_hist_Base::CanGetReplaces ( void  ) const

inline

Check if it is safe to call GetReplaces method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 531 of file Seq_hist_.hpp.

References CSeq_hist_Base::IsSetReplaces().

Referenced by CSeq_hist_Base::GetReplaces().

CanGetRepr()

bool CSeq_inst_Base::CanGetRepr ( void  ) const

inline

Check if it is safe to call GetRepr method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 552 of file Seq_inst_.hpp.

References CSeq_inst_Base::IsSetRepr().

Referenced by CSeq_inst_Base::GetRepr(), HasAssemblyOrNullGap(), CValidError_bioseq::HasBadWGSGap(), CValidError_bioseq::IsHistAssemblyMissing(), and CValidError_bioseq::ReportBadAssemblyGap().

CanGetSeq_data() [1/2]

bool CSeq_inst_Base::CanGetSeq_data ( void  ) const

inline

Check if it is safe to call GetSeq_data method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 811 of file Seq_inst_.hpp.

References CSeq_inst_Base::IsSetSeq_data().

Referenced by BOOST_AUTO_TEST_CASE(), CSeq_inst_Base::GetSeq_data(), CBlastBioseqMaker::IsEmptyBioseq(), RetrievePartsOfLargeChromosome(), CWinMaskDemoApplication::Run(), s_HasRawSequence(), CUnorderedSplitter::SplitId(), CUnorderedSplitter::SplitLoc(), and CWriteDB_Impl::x_CookSequence().

CanGetSeq_data() [2/2]

bool CSeq_literal_Base::CanGetSeq_data ( void  ) const

inline

Check if it is safe to call GetSeq_data method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 316 of file Seq_literal_.hpp.

References CSeq_literal_Base::IsSetSeq_data().

Referenced by NSNPVariationHelper::GetDeltas(), GetDeltaSeqSummary(), CSeq_literal_Base::GetSeq_data(), CGuiObjectInfoVariant::GetToolTip(), NSnpGui::GetVcfType(), s_FixBioseqDeltas(), s_NsAreGaps(), CFeatureItem::x_AddQualsVariation(), CValidError_bioseq::x_CountAdjacentNs(), and CUnorderedSplitter::x_SplitDeltaExt().

CanGetSeq_raw()

bool CPubdesc_Base::CanGetSeq_raw ( void  ) const

inline

Check if it is safe to call GetSeq_raw method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 885 of file Pubdesc_.hpp.

References CPubdesc_Base::IsSetSeq_raw().

Referenced by CPubdesc_Base::GetSeq_raw().

CanGetStrand()

bool CSeq_inst_Base::CanGetStrand ( void  ) const

inline

Check if it is safe to call GetStrand method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 764 of file Seq_inst_.hpp.

References CSeq_inst_Base::IsSetStrand().

Referenced by CMolinfo_field::GetSequenceQualFromBioseq(), and CSeq_inst_Base::GetStrand().

CanGetTech()

bool CMolInfo_Base::CanGetTech ( void  ) const

inline

Check if it is safe to call GetTech method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 478 of file MolInfo_.hpp.

Referenced by CFlatXrefQVal::Format(), CTabularFormatter_Tech::Print(), and CKeywordsItem::x_GatherInfo().

CanGetTechexp()

bool CMolInfo_Base::CanGetTechexp ( void  ) const

inline

Check if it is safe to call GetTechexp method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 528 of file MolInfo_.hpp.

References CMolInfo_Base::IsSetTechexp().

Referenced by CMolInfo_Base::GetTechexp().

CanGetTopology()

bool CSeq_inst_Base::CanGetTopology ( void  ) const

inline

Check if it is safe to call GetTopology method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 714 of file Seq_inst_.hpp.

Referenced by CMolinfo_field::GetSequenceQualFromBioseq().

CanGetType() [1/3]

bool CLinkage_evidence_Base::CanGetType ( void  ) const

inline

Check if it is safe to call GetType method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 178 of file Linkage_evidence_.hpp.

References CLinkage_evidence_Base::IsSetType().

Referenced by CFastaOstream::GetGapModText(), CLinkage_evidence_Base::GetType(), s_IsUnspecified(), and CValidError_bioseq::ValidateSeqGap().

CanGetType() [2/3]

bool CNum_ref_Base::CanGetType ( void  ) const

inline

Check if it is safe to call GetType method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 215 of file Num_ref_.hpp.

References CNum_ref_Base::IsSetType().

Referenced by CNum_ref_Base::GetType().

CanGetType() [3/3]

bool CSeq_gap_Base::CanGetType ( void  ) const

inline

Check if it is safe to call GetType method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 269 of file Seq_gap_.hpp.

References CSeq_gap_Base::IsSetType().

Referenced by CFastaOstream::GetGapModText(), and CSeq_gap_Base::GetType().

CanGetUnits()

bool CNum_real_Base::CanGetUnits ( void  ) const

inline

Check if it is safe to call GetUnits method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 342 of file Num_real_.hpp.

References CNum_real_Base::IsSetUnits().

Referenced by CNum_real_Base::GetUnits().

CanGetVersion()

bool CTextannot_id_Base::CanGetVersion ( void  ) const

inline

Check if it is safe to call GetVersion method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 434 of file Textannot_id_.hpp.

References CTextannot_id_Base::IsSetVersion().

Referenced by CTextannot_id_Base::GetVersion().

CAnnot_descr() [1/2]

CAnnot_descr::CAnnot_descr ( const CAnnot_descr &  value )

private

CAnnot_descr() [2/2]

CAnnot_descr::CAnnot_descr ( void  )

inline

Definition at line 86 of file Annot_descr.hpp.

CAnnot_descr_Base() [1/2]

CAnnot_descr_Base::CAnnot_descr_Base ( const CAnnot_descr_Base &  )

private

CAnnot_descr_Base() [2/2]

END_CLASS_INFO CAnnot_descr_Base::CAnnot_descr_Base

(

void

)

Definition at line 68 of file Annot_descr_.cpp.

References CAnnot_descr_Base::m_set_State.

CAnnot_id() [1/2]

CAnnot_id::CAnnot_id ( const CAnnot_id &  value )

private

CAnnot_id() [2/2]

CAnnot_id::CAnnot_id ( void  )

inline

Definition at line 86 of file Annot_id.hpp.

CAnnot_id_Base() [1/2]

CAnnot_id_Base::CAnnot_id_Base ( const CAnnot_id_Base &  )

private

CAnnot_id_Base() [2/2]

END_CHOICE_INFO CAnnot_id_Base::CAnnot_id_Base

(

void

)

Definition at line 194 of file Annot_id_.cpp.

CAnnotdesc() [1/2]

CAnnotdesc::CAnnotdesc ( const CAnnotdesc &  value )

private

CAnnotdesc() [2/2]

CAnnotdesc::CAnnotdesc ( void  )

inline

Definition at line 86 of file Annotdesc.hpp.

CAnnotdesc_Base() [1/2]

CAnnotdesc_Base::CAnnotdesc_Base ( const CAnnotdesc_Base &  )

private

CAnnotdesc_Base() [2/2]

END_CHOICE_INFO CAnnotdesc_Base::CAnnotdesc_Base

(

void

)

Definition at line 338 of file Annotdesc_.cpp.

CBioseq_Base() [1/2]

CBioseq_Base::CBioseq_Base ( const CBioseq_Base &  )

private

CBioseq_Base() [2/2]

END_CLASS_INFO CBioseq_Base::CBioseq_Base

(

void

)

Definition at line 119 of file Bioseq_.cpp.

References CObject::IsAllocatedInPool(), CBioseq_Base::m_set_State, and CBioseq_Base::ResetInst().

CDelta_ext_Base() [1/2]

CDelta_ext_Base::CDelta_ext_Base ( const CDelta_ext_Base &  )

private

CDelta_ext_Base() [2/2]

END_CLASS_INFO CDelta_ext_Base::CDelta_ext_Base

(

void

)

Definition at line 68 of file Delta_ext_.cpp.

References CDelta_ext_Base::m_set_State.

CDelta_seq() [1/2]

CDelta_seq::CDelta_seq ( const CDelta_seq &  value )

private

CDelta_seq() [2/2]

CDelta_seq::CDelta_seq ( void  )

inline

Definition at line 86 of file Delta_seq.hpp.

CDelta_seq_Base() [1/2]

CDelta_seq_Base::CDelta_seq_Base ( const CDelta_seq_Base &  )

private

CDelta_seq_Base() [2/2]

END_CHOICE_INFO CDelta_seq_Base::CDelta_seq_Base

(

void

)

Definition at line 160 of file Delta_seq_.cpp.

CheckSelected() [1/9]

void CAnnot_id_Base::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 295 of file Annot_id_.hpp.

References CAnnot_id_Base::m_choice, and CAnnot_id_Base::ThrowInvalidSelection().

Referenced by CAnnot_id_Base::GetGeneral(), CAnnot_id_Base::GetLocal(), CAnnot_id_Base::GetNcbi(), and CAnnot_id_Base::GetOther().

CheckSelected() [2/9]

void CAnnotdesc_Base::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 472 of file Annotdesc_.hpp.

References CAnnotdesc_Base::m_choice, and CAnnotdesc_Base::ThrowInvalidSelection().

Referenced by CAnnotdesc_Base::GetAlign(), CAnnotdesc_Base::GetComment(), CAnnotdesc_Base::GetCreate_date(), CAnnotdesc_Base::GetName(), CAnnotdesc_Base::GetPub(), CAnnotdesc_Base::GetRegion(), CAnnotdesc_Base::GetSrc(), CAnnotdesc_Base::GetTitle(), CAnnotdesc_Base::GetUpdate_date(), and CAnnotdesc_Base::GetUser().

CheckSelected() [3/9]

void CDelta_seq_Base::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 234 of file Delta_seq_.hpp.

References CDelta_seq_Base::m_choice, and CDelta_seq_Base::ThrowInvalidSelection().

Referenced by CDelta_seq_Base::GetLiteral(), and CDelta_seq_Base::GetLoc().

CheckSelected() [4/9]

void CNumbering_Base::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 293 of file Numbering_.hpp.

References CNumbering_Base::m_choice, and CNumbering_Base::ThrowInvalidSelection().

Referenced by CNumbering_Base::GetCont(), CNumbering_Base::GetEnum(), CNumbering_Base::GetReal(), and CNumbering_Base::GetRef().

CheckSelected() [5/9]

void CSeq_annot_Base::C_Data::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 592 of file Seq_annot_.hpp.

CheckSelected() [6/9]

void CSeq_data_Base::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 481 of file Seq_data_.hpp.

References CSeq_data_Base::m_choice, and CSeq_data_Base::ThrowInvalidSelection().

Referenced by CSeq_data_Base::GetGap(), CSeq_data_Base::GetIupacaa(), CSeq_data_Base::GetIupacna(), CSeq_data_Base::GetNcbi2na(), CSeq_data_Base::GetNcbi4na(), CSeq_data_Base::GetNcbi8aa(), CSeq_data_Base::GetNcbi8na(), CSeq_data_Base::GetNcbieaa(), CSeq_data_Base::GetNcbipaa(), CSeq_data_Base::GetNcbipna(), and CSeq_data_Base::GetNcbistdaa().

CheckSelected() [7/9]

void CSeq_ext_Base::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 295 of file Seq_ext_.hpp.

References CSeq_ext_Base::m_choice, and CSeq_ext_Base::ThrowInvalidSelection().

Referenced by CSeq_ext_Base::GetDelta(), CSeq_ext_Base::GetMap(), CSeq_ext_Base::GetRef(), and CSeq_ext_Base::GetSeg().

CheckSelected() [8/9]

void CSeq_hist_Base::C_Deleted::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 444 of file Seq_hist_.hpp.

CheckSelected() [9/9]

void CSeqdesc_Base::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 909 of file Seqdesc_.hpp.

References CSeqdesc_Base::m_choice, and CSeqdesc_Base::ThrowInvalidSelection().

Referenced by CSeqdesc_Base::GetComment(), CSeqdesc_Base::GetCreate_date(), CSeqdesc_Base::GetDbxref(), CSeqdesc_Base::GetEmbl(), CSeqdesc_Base::GetGenbank(), CSeqdesc_Base::GetHet(), CSeqdesc_Base::GetMaploc(), CSeqdesc_Base::GetMethod(), CSeqdesc_Base::GetModelev(), CSeqdesc_Base::GetModif(), CSeqdesc_Base::GetMol_type(), CSeqdesc_Base::GetMolinfo(), CSeqdesc_Base::GetName(), CSeqdesc_Base::GetNum(), CSeqdesc_Base::GetOrg(), CSeqdesc_Base::GetPdb(), CSeqdesc_Base::GetPir(), CSeqdesc_Base::GetPrf(), CSeqdesc_Base::GetPub(), CSeqdesc_Base::GetRegion(), CSeqdesc_Base::GetSource(), CSeqdesc_Base::GetSp(), CSeqdesc_Base::GetTitle(), CSeqdesc_Base::GetUpdate_date(), and CSeqdesc_Base::GetUser().

CHeterogen() [1/2]

CHeterogen::CHeterogen ( const std::string &  value )

inlineexplicit

Explicit constructor from the primitive type.

Definition at line 72 of file Heterogen.hpp.

CHeterogen() [2/2]

CHeterogen::CHeterogen ( void  )

inline

Definition at line 69 of file Heterogen.hpp.

CHeterogen_Base() [1/2]

CHeterogen_Base::CHeterogen_Base ( const string &  data )

inlineexplicit

Definition at line 101 of file Heterogen_.hpp.

CHeterogen_Base() [2/2]

CHeterogen_Base::CHeterogen_Base ( void  )

inline

Definition at line 96 of file Heterogen_.hpp.

CIUPACaa() [1/2]

CIUPACaa::CIUPACaa ( const std::string &  value )

inlineexplicit

Explicit constructor from the primitive type.

Definition at line 72 of file IUPACaa.hpp.

CIUPACaa() [2/2]

CIUPACaa::CIUPACaa ( void  )

inline

Definition at line 69 of file IUPACaa.hpp.

CIUPACaa_Base() [1/2]

CIUPACaa_Base::CIUPACaa_Base ( const string &  data )

inlineexplicit

Definition at line 101 of file IUPACaa_.hpp.

CIUPACaa_Base() [2/2]

CIUPACaa_Base::CIUPACaa_Base ( void  )

inline

Definition at line 96 of file IUPACaa_.hpp.

CIUPACna() [1/2]

CIUPACna::CIUPACna ( const std::string &  value )

inlineexplicit

Explicit constructor from the primitive type.

Definition at line 72 of file IUPACna.hpp.

CIUPACna() [2/2]

CIUPACna::CIUPACna ( void  )

inline

Definition at line 69 of file IUPACna.hpp.

CIUPACna_Base() [1/2]

CIUPACna_Base::CIUPACna_Base ( const string &  data )

inlineexplicit

Definition at line 101 of file IUPACna_.hpp.

CIUPACna_Base() [2/2]

CIUPACna_Base::CIUPACna_Base ( void  )

inline

Definition at line 96 of file IUPACna_.hpp.

CLinkage_evidence_Base() [1/2]

CLinkage_evidence_Base::CLinkage_evidence_Base ( const CLinkage_evidence_Base &  )

private

CLinkage_evidence_Base() [2/2]

END_CLASS_INFO CLinkage_evidence_Base::CLinkage_evidence_Base

(

void

)

Definition at line 85 of file Linkage_evidence_.cpp.

References CLinkage_evidence_Base::m_set_State.

CMap_ext() [1/2]

CMap_ext::CMap_ext ( const CMap_ext &  value )

private

CMap_ext() [2/2]

CMap_ext::CMap_ext ( void  )

inline

Definition at line 86 of file Map_ext.hpp.

CMap_ext_Base() [1/2]

CMap_ext_Base::CMap_ext_Base ( const CMap_ext_Base &  )

private

CMap_ext_Base() [2/2]

END_CLASS_INFO CMap_ext_Base::CMap_ext_Base

(

void

)

Definition at line 68 of file Map_ext_.cpp.

References CMap_ext_Base::m_set_State.

CMolInfo_Base() [1/2]

CMolInfo_Base::CMolInfo_Base ( const CMolInfo_Base &  )

private

CMolInfo_Base() [2/2]

END_CLASS_INFO CMolInfo_Base::CMolInfo_Base

(

void

)

Definition at line 159 of file MolInfo_.cpp.

References CMolInfo_Base::m_set_State.

CNCBI2na() [1/2]

CNCBI2na::CNCBI2na ( const std::vector< char > &  value )

inlineexplicit

Explicit constructor from the primitive type.

Definition at line 72 of file NCBI2na.hpp.

CNCBI2na() [2/2]

CNCBI2na::CNCBI2na ( void  )

inline

Definition at line 69 of file NCBI2na.hpp.

CNCBI2na_Base() [1/2]

CNCBI2na_Base::CNCBI2na_Base ( const vector< char > &  data )

inlineexplicit

Definition at line 101 of file NCBI2na_.hpp.

CNCBI2na_Base() [2/2]

CNCBI2na_Base::CNCBI2na_Base ( void  )

inline

Definition at line 96 of file NCBI2na_.hpp.

CNCBI4na() [1/2]

CNCBI4na::CNCBI4na ( const std::vector< char > &  value )

inlineexplicit

Explicit constructor from the primitive type.

Definition at line 72 of file NCBI4na.hpp.

CNCBI4na() [2/2]

CNCBI4na::CNCBI4na ( void  )

inline

Definition at line 69 of file NCBI4na.hpp.

CNCBI4na_Base() [1/2]

CNCBI4na_Base::CNCBI4na_Base ( const vector< char > &  data )

inlineexplicit

Definition at line 103 of file NCBI4na_.hpp.

CNCBI4na_Base() [2/2]

CNCBI4na_Base::CNCBI4na_Base ( void  )

inline

Definition at line 98 of file NCBI4na_.hpp.

CNCBI8aa() [1/2]

CNCBI8aa::CNCBI8aa ( const std::vector< char > &  value )

inlineexplicit

Explicit constructor from the primitive type.

Definition at line 72 of file NCBI8aa.hpp.

CNCBI8aa() [2/2]

CNCBI8aa::CNCBI8aa ( void  )

inline

Definition at line 69 of file NCBI8aa.hpp.

CNCBI8aa_Base() [1/2]

CNCBI8aa_Base::CNCBI8aa_Base ( const vector< char > &  data )

inlineexplicit

Definition at line 101 of file NCBI8aa_.hpp.

CNCBI8aa_Base() [2/2]

CNCBI8aa_Base::CNCBI8aa_Base ( void  )

inline

Definition at line 96 of file NCBI8aa_.hpp.

CNCBI8na() [1/2]

CNCBI8na::CNCBI8na ( const std::vector< char > &  value )

inlineexplicit

Explicit constructor from the primitive type.

Definition at line 72 of file NCBI8na.hpp.

CNCBI8na() [2/2]

CNCBI8na::CNCBI8na ( void  )

inline

Definition at line 69 of file NCBI8na.hpp.

CNCBI8na_Base() [1/2]

CNCBI8na_Base::CNCBI8na_Base ( const vector< char > &  data )

inlineexplicit

Definition at line 101 of file NCBI8na_.hpp.

CNCBI8na_Base() [2/2]

CNCBI8na_Base::CNCBI8na_Base ( void  )

inline

Definition at line 96 of file NCBI8na_.hpp.

CNCBIeaa() [1/2]

CNCBIeaa::CNCBIeaa ( const std::string &  value )

inlineexplicit

Explicit constructor from the primitive type.

Definition at line 72 of file NCBIeaa.hpp.

CNCBIeaa() [2/2]

CNCBIeaa::CNCBIeaa ( void  )

inline

Definition at line 69 of file NCBIeaa.hpp.

CNCBIeaa_Base() [1/2]

CNCBIeaa_Base::CNCBIeaa_Base ( const string &  data )

inlineexplicit

Definition at line 102 of file NCBIeaa_.hpp.

CNCBIeaa_Base() [2/2]

CNCBIeaa_Base::CNCBIeaa_Base ( void  )

inline

Definition at line 97 of file NCBIeaa_.hpp.

CNCBIpaa() [1/2]

CNCBIpaa::CNCBIpaa ( const std::vector< char > &  value )

inlineexplicit

Explicit constructor from the primitive type.

Definition at line 72 of file NCBIpaa.hpp.

CNCBIpaa() [2/2]

CNCBIpaa::CNCBIpaa ( void  )

inline

Definition at line 69 of file NCBIpaa.hpp.

CNCBIpaa_Base() [1/2]

CNCBIpaa_Base::CNCBIpaa_Base ( const vector< char > &  data )

inlineexplicit

Definition at line 103 of file NCBIpaa_.hpp.

CNCBIpaa_Base() [2/2]

CNCBIpaa_Base::CNCBIpaa_Base ( void  )

inline

Definition at line 98 of file NCBIpaa_.hpp.

CNCBIpna() [1/2]

CNCBIpna::CNCBIpna ( const std::vector< char > &  value )

inlineexplicit

Explicit constructor from the primitive type.

Definition at line 72 of file NCBIpna.hpp.

CNCBIpna() [2/2]

CNCBIpna::CNCBIpna ( void  )

inline

Definition at line 69 of file NCBIpna.hpp.

CNCBIpna_Base() [1/2]

CNCBIpna_Base::CNCBIpna_Base ( const vector< char > &  data )

inlineexplicit

Definition at line 102 of file NCBIpna_.hpp.

CNCBIpna_Base() [2/2]

CNCBIpna_Base::CNCBIpna_Base ( void  )

inline

Definition at line 97 of file NCBIpna_.hpp.

CNCBIstdaa() [1/2]

CNCBIstdaa::CNCBIstdaa ( const std::vector< char > &  value )

inlineexplicit

Explicit constructor from the primitive type.

Definition at line 72 of file NCBIstdaa.hpp.

CNCBIstdaa() [2/2]

CNCBIstdaa::CNCBIstdaa ( void  )

inline

Definition at line 69 of file NCBIstdaa.hpp.

CNCBIstdaa_Base() [1/2]

CNCBIstdaa_Base::CNCBIstdaa_Base ( const vector< char > &  data )

inlineexplicit

Definition at line 101 of file NCBIstdaa_.hpp.

CNCBIstdaa_Base() [2/2]

CNCBIstdaa_Base::CNCBIstdaa_Base ( void  )

inline

Definition at line 96 of file NCBIstdaa_.hpp.

CNum_cont() [1/2]

CNum_cont::CNum_cont ( const CNum_cont &  value )

private

CNum_cont() [2/2]

CNum_cont::CNum_cont ( void  )

inline

Definition at line 86 of file Num_cont.hpp.

CNum_cont_Base() [1/2]

CNum_cont_Base::CNum_cont_Base ( const CNum_cont_Base &  )

private

CNum_cont_Base() [2/2]

END_CLASS_INFO CNum_cont_Base::CNum_cont_Base

(

void

)

Definition at line 70 of file Num_cont_.cpp.

References CNum_cont_Base::m_set_State.

CNum_enum() [1/2]

CNum_enum::CNum_enum ( const CNum_enum &  value )

private

CNum_enum() [2/2]

CNum_enum::CNum_enum ( void  )

inline

Definition at line 86 of file Num_enum.hpp.

CNum_enum_Base() [1/2]

CNum_enum_Base::CNum_enum_Base ( const CNum_enum_Base &  )

private

CNum_enum_Base() [2/2]

END_CLASS_INFO CNum_enum_Base::CNum_enum_Base

(

void

)

Definition at line 74 of file Num_enum_.cpp.

References CNum_enum_Base::m_set_State.

CNum_real() [1/2]

CNum_real::CNum_real ( const CNum_real &  value )

private

CNum_real() [2/2]

CNum_real::CNum_real ( void  )

inline

Definition at line 86 of file Num_real.hpp.

CNum_real_Base() [1/2]

CNum_real_Base::CNum_real_Base ( const CNum_real_Base &  )

private

CNum_real_Base() [2/2]

END_CLASS_INFO CNum_real_Base::CNum_real_Base

(

void

)

Definition at line 76 of file Num_real_.cpp.

References CNum_real_Base::m_set_State.

CNum_ref() [1/2]

CNum_ref::CNum_ref ( const CNum_ref &  value )

private

CNum_ref() [2/2]

CNum_ref::CNum_ref ( void  )

inline

Definition at line 86 of file Num_ref.hpp.

CNum_ref_Base() [1/2]

CNum_ref_Base::CNum_ref_Base ( const CNum_ref_Base &  )

private

CNum_ref_Base() [2/2]

END_CLASS_INFO CNum_ref_Base::CNum_ref_Base

(

void

)

Definition at line 96 of file Num_ref_.cpp.

References CNum_ref_Base::m_set_State.

CNumbering() [1/2]

CNumbering::CNumbering ( const CNumbering &  value )

private

CNumbering() [2/2]

CNumbering::CNumbering ( void  )

inline

Definition at line 86 of file Numbering.hpp.

CNumbering_Base() [1/2]

CNumbering_Base::CNumbering_Base ( const CNumbering_Base &  )

private

CNumbering_Base() [2/2]

END_CHOICE_INFO CNumbering_Base::CNumbering_Base

(

void

)

Definition at line 218 of file Numbering_.cpp.

CPubdesc_Base() [1/2]

CPubdesc_Base::CPubdesc_Base ( const CPubdesc_Base &  )

private

CPubdesc_Base() [2/2]

END_CLASS_INFO CPubdesc_Base::CPubdesc_Base

(

void

)

Definition at line 160 of file Pubdesc_.cpp.

References CObject::IsAllocatedInPool(), CPubdesc_Base::m_set_State, and CPubdesc_Base::ResetPub().

CRef_ext()

CRef_ext::CRef_ext ( void  )

inline

Definition at line 69 of file Ref_ext.hpp.

CRef_ext_Base()

CRef_ext_Base::CRef_ext_Base ( void  )

inline

Definition at line 96 of file Ref_ext_.hpp.

CSeg_ext() [1/2]

CSeg_ext::CSeg_ext ( const CSeg_ext &  value )

private

CSeg_ext() [2/2]

CSeg_ext::CSeg_ext ( void  )

inline

Definition at line 86 of file Seg_ext.hpp.

CSeg_ext_Base() [1/2]

CSeg_ext_Base::CSeg_ext_Base ( const CSeg_ext_Base &  )

private

CSeg_ext_Base() [2/2]

END_CLASS_INFO CSeg_ext_Base::CSeg_ext_Base

(

void

)

Definition at line 68 of file Seg_ext_.cpp.

References CSeg_ext_Base::m_set_State.

CSeq_annot_Base() [1/2]

CSeq_annot_Base::CSeq_annot_Base ( const CSeq_annot_Base &  )

private

CSeq_annot_Base() [2/2]

END_CLASS_INFO CSeq_annot_Base::CSeq_annot_Base

(

void

)

Definition at line 273 of file Seq_annot_.cpp.

References CObject::IsAllocatedInPool(), CSeq_annot_Base::m_set_State, and CSeq_annot_Base::ResetData().

CSeq_data_Base() [1/2]

CSeq_data_Base::CSeq_data_Base ( const CSeq_data_Base &  )

private

CSeq_data_Base() [2/2]

END_CHOICE_INFO CSeq_data_Base::CSeq_data_Base

(

void

)

Definition at line 229 of file Seq_data_.cpp.

CSeq_descr_Base() [1/2]

CSeq_descr_Base::CSeq_descr_Base ( const CSeq_descr_Base &  )

private

CSeq_descr_Base() [2/2]

END_CLASS_INFO CSeq_descr_Base::CSeq_descr_Base

(

void

)

Definition at line 68 of file Seq_descr_.cpp.

References CSeq_descr_Base::m_set_State.

CSeq_ext() [1/2]

CSeq_ext::CSeq_ext ( const CSeq_ext &  value )

private

CSeq_ext() [2/2]

CSeq_ext::CSeq_ext ( void  )

inline

Definition at line 86 of file Seq_ext.hpp.

CSeq_ext_Base() [1/2]

CSeq_ext_Base::CSeq_ext_Base ( const CSeq_ext_Base &  )

private

CSeq_ext_Base() [2/2]

END_CHOICE_INFO CSeq_ext_Base::CSeq_ext_Base

(

void

)

Definition at line 218 of file Seq_ext_.cpp.

CSeq_gap_Base() [1/2]

CSeq_gap_Base::CSeq_gap_Base ( const CSeq_gap_Base &  )

private

CSeq_gap_Base() [2/2]

END_CLASS_INFO CSeq_gap_Base::CSeq_gap_Base

(

void

)

Definition at line 106 of file Seq_gap_.cpp.

References CSeq_gap_Base::m_set_State.

CSeq_hist() [1/2]

CSeq_hist::CSeq_hist ( const CSeq_hist &  value )

private

CSeq_hist() [2/2]

CSeq_hist::CSeq_hist ( void  )

inline

Definition at line 86 of file Seq_hist.hpp.

CSeq_hist_Base() [1/2]

CSeq_hist_Base::CSeq_hist_Base ( const CSeq_hist_Base &  )

private

CSeq_hist_Base() [2/2]

END_CLASS_INFO CSeq_hist_Base::CSeq_hist_Base

(

void

)

Definition at line 230 of file Seq_hist_.cpp.

References CSeq_hist_Base::m_set_State.

CSeq_hist_rec() [1/2]

CSeq_hist_rec::CSeq_hist_rec ( const CSeq_hist_rec &  value )

private

CSeq_hist_rec() [2/2]

CSeq_hist_rec::CSeq_hist_rec ( void  )

inline

Definition at line 86 of file Seq_hist_rec.hpp.

CSeq_hist_rec_Base() [1/2]

CSeq_hist_rec_Base::CSeq_hist_rec_Base ( const CSeq_hist_rec_Base &  )

private

CSeq_hist_rec_Base() [2/2]

END_CLASS_INFO CSeq_hist_rec_Base::CSeq_hist_rec_Base

(

void

)

Definition at line 93 of file Seq_hist_rec_.cpp.

References CSeq_hist_rec_Base::m_set_State.

CSeq_inst_Base() [1/2]

CSeq_inst_Base::CSeq_inst_Base ( const CSeq_inst_Base &  )

private

CSeq_inst_Base() [2/2]

END_CLASS_INFO CSeq_inst_Base::CSeq_inst_Base

(

void

)

Definition at line 208 of file Seq_inst_.cpp.

References CSeq_inst_Base::m_set_State.

CSeq_literal_Base() [1/2]

CSeq_literal_Base::CSeq_literal_Base ( const CSeq_literal_Base &  )

private

CSeq_literal_Base() [2/2]

END_CLASS_INFO CSeq_literal_Base::CSeq_literal_Base

(

void

)

Definition at line 106 of file Seq_literal_.cpp.

References CSeq_literal_Base::m_set_State.

CSeqdesc_Base() [1/2]

CSeqdesc_Base::CSeqdesc_Base ( const CSeqdesc_Base &  )

private

CSeqdesc_Base() [2/2]

END_CHOICE_INFO CSeqdesc_Base::CSeqdesc_Base

(

void

)

Definition at line 669 of file Seqdesc_.cpp.

CTextannot_id() [1/2]

CTextannot_id::CTextannot_id ( const CTextannot_id &  value )

private

CTextannot_id() [2/2]

CTextannot_id::CTextannot_id ( void  )

inline

Definition at line 86 of file Textannot_id.hpp.

CTextannot_id_Base() [1/2]

CTextannot_id_Base::CTextannot_id_Base ( const CTextannot_id_Base &  )

private

CTextannot_id_Base() [2/2]

END_CLASS_INFO CTextannot_id_Base::CTextannot_id_Base

(

void

)

Definition at line 90 of file Textannot_id_.cpp.

References CTextannot_id_Base::m_set_State.

DECLARE_INTERNAL_TYPE_INFO() [1/31]

CAlign_def_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [2/31]

CAnnot_descr_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [3/31]

CAnnot_id_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [4/31]

CAnnotdesc_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [5/31]

CBioseq_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [6/31]

CDelta_ext_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [7/31]

CDelta_seq_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [8/31]

CLinkage_evidence_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [9/31]

CMap_ext_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [10/31]

CMolInfo_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [11/31]

CNum_cont_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [12/31]

CNum_enum_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [13/31]

CNum_real_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [14/31]

CNum_ref_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [15/31]

CNumbering_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [16/31]

CPubdesc_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [17/31]

CRef_ext_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [18/31]

CSeg_ext_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [19/31]

CSeq_annot_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [20/31]

CSeq_annot_Base::C_Data::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [21/31]

CSeq_data_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [22/31]

CSeq_descr_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [23/31]

CSeq_ext_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [24/31]

CSeq_gap_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [25/31]

CSeq_hist_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [26/31]

CSeq_hist_Base::C_Deleted::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [27/31]

CSeq_hist_rec_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [28/31]

CSeq_inst_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [29/31]

CSeq_literal_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [30/31]

CSeqdesc_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [31/31]

CTextannot_id_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_STD_ALIAS_TYPE_INFO() [1/11]

CHeterogen_Base::DECLARE_STD_ALIAS_TYPE_INFO

(

)

DECLARE_STD_ALIAS_TYPE_INFO() [2/11]

CIUPACaa_Base::DECLARE_STD_ALIAS_TYPE_INFO

(

)

DECLARE_STD_ALIAS_TYPE_INFO() [3/11]

CIUPACna_Base::DECLARE_STD_ALIAS_TYPE_INFO

(

)

DECLARE_STD_ALIAS_TYPE_INFO() [4/11]

CNCBI2na_Base::DECLARE_STD_ALIAS_TYPE_INFO

(

)

DECLARE_STD_ALIAS_TYPE_INFO() [5/11]

CNCBI4na_Base::DECLARE_STD_ALIAS_TYPE_INFO

(

)

DECLARE_STD_ALIAS_TYPE_INFO() [6/11]

CNCBI8aa_Base::DECLARE_STD_ALIAS_TYPE_INFO

(

)

DECLARE_STD_ALIAS_TYPE_INFO() [7/11]

CNCBI8na_Base::DECLARE_STD_ALIAS_TYPE_INFO

(

)

DECLARE_STD_ALIAS_TYPE_INFO() [8/11]

CNCBIeaa_Base::DECLARE_STD_ALIAS_TYPE_INFO

(

)

DECLARE_STD_ALIAS_TYPE_INFO() [9/11]

CNCBIpaa_Base::DECLARE_STD_ALIAS_TYPE_INFO

(

)

DECLARE_STD_ALIAS_TYPE_INFO() [10/11]

CNCBIpna_Base::DECLARE_STD_ALIAS_TYPE_INFO

(

)

DECLARE_STD_ALIAS_TYPE_INFO() [11/11]

CNCBIstdaa_Base::DECLARE_STD_ALIAS_TYPE_INFO

(

)

DoSelect() [1/9]

void CAnnot_id_Base::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 73 of file Annot_id_.cpp.

References CObject::AddReference(), CAnnot_id_Base::e_General, CAnnot_id_Base::e_Local, CAnnot_id_Base::e_Ncbi, CAnnot_id_Base::e_Other, CAnnot_id_Base::m_choice, CAnnot_id_Base::m_Ncbi, and CAnnot_id_Base::m_object.

DoSelect() [2/9]

void CAnnotdesc_Base::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 85 of file Annotdesc_.cpp.

References CObject::AddReference(), CAnnotdesc_Base::e_Align, CAnnotdesc_Base::e_Comment, CAnnotdesc_Base::e_Create_date, CAnnotdesc_Base::e_Name, CAnnotdesc_Base::e_Pub, CAnnotdesc_Base::e_Region, CAnnotdesc_Base::e_Src, CAnnotdesc_Base::e_Title, CAnnotdesc_Base::e_Update_date, CAnnotdesc_Base::e_User, CAnnotdesc_Base::m_choice, CAnnotdesc_Base::m_object, and CAnnotdesc_Base::m_string.

DoSelect() [3/9]

void CDelta_seq_Base::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 71 of file Delta_seq_.cpp.

References CObject::AddReference(), CDelta_seq_Base::e_Literal, CDelta_seq_Base::e_Loc, CDelta_seq_Base::m_choice, and CDelta_seq_Base::m_object.

DoSelect() [4/9]

void CNumbering_Base::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 75 of file Numbering_.cpp.

References CObject::AddReference(), CNumbering_Base::e_Cont, CNumbering_Base::e_Enum, CNumbering_Base::e_Real, CNumbering_Base::e_Ref, CNumbering_Base::m_choice, and CNumbering_Base::m_object.

DoSelect() [5/9]

void CSeq_annot_Base::C_Data::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 106 of file Seq_annot_.cpp.

References CObject::AddReference().

DoSelect() [6/9]

void CSeq_data_Base::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 99 of file Seq_data_.cpp.

References CObject::AddReference(), CSeq_data_Base::e_Gap, CSeq_data_Base::e_Iupacaa, CSeq_data_Base::e_Iupacna, CSeq_data_Base::e_Ncbi2na, CSeq_data_Base::e_Ncbi4na, CSeq_data_Base::e_Ncbi8aa, CSeq_data_Base::e_Ncbi8na, CSeq_data_Base::e_Ncbieaa, CSeq_data_Base::e_Ncbipaa, CSeq_data_Base::e_Ncbipna, CSeq_data_Base::e_Ncbistdaa, CSeq_data_Base::m_choice, CSeq_data_Base::m_Iupacaa, CSeq_data_Base::m_Iupacna, CSeq_data_Base::m_Ncbi2na, CSeq_data_Base::m_Ncbi4na, CSeq_data_Base::m_Ncbi8aa, CSeq_data_Base::m_Ncbi8na, CSeq_data_Base::m_Ncbieaa, CSeq_data_Base::m_Ncbipaa, CSeq_data_Base::m_Ncbipna, CSeq_data_Base::m_Ncbistdaa, and CSeq_data_Base::m_object.

DoSelect() [7/9]

void CSeq_ext_Base::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 75 of file Seq_ext_.cpp.

References CObject::AddReference(), CSeq_ext_Base::e_Delta, CSeq_ext_Base::e_Map, CSeq_ext_Base::e_Ref, CSeq_ext_Base::e_Seg, CSeq_ext_Base::m_choice, and CSeq_ext_Base::m_object.

DoSelect() [8/9]

void CSeq_hist_Base::C_Deleted::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 71 of file Seq_hist_.cpp.

References CObject::AddReference().

DoSelect() [9/9]

void CSeqdesc_Base::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 111 of file Seqdesc_.cpp.

References CObject::AddReference(), CSeqdesc_Base::e_Comment, CSeqdesc_Base::e_Create_date, CSeqdesc_Base::e_Dbxref, CSeqdesc_Base::e_Embl, CSeqdesc_Base::e_Genbank, CSeqdesc_Base::e_Het, CSeqdesc_Base::e_Maploc, CSeqdesc_Base::e_Method, CSeqdesc_Base::e_Modelev, CSeqdesc_Base::e_Modif, CSeqdesc_Base::e_Mol_type, CSeqdesc_Base::e_Molinfo, CSeqdesc_Base::e_Name, CSeqdesc_Base::e_Num, CSeqdesc_Base::e_Org, CSeqdesc_Base::e_Pdb, CSeqdesc_Base::e_Pir, CSeqdesc_Base::e_Prf, CSeqdesc_Base::e_Pub, CSeqdesc_Base::e_Region, CSeqdesc_Base::e_Source, CSeqdesc_Base::e_Sp, CSeqdesc_Base::e_Title, CSeqdesc_Base::e_Update_date, CSeqdesc_Base::e_User, CSeqdesc_Base::m_choice, CSeqdesc_Base::m_Het, CSeqdesc_Base::m_Method, CSeqdesc_Base::m_Modif, CSeqdesc_Base::m_Mol_type, CSeqdesc_Base::m_object, and CSeqdesc_Base::m_string.

EAlign_type()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CAlign_def_Base::EAlign_type ( void  )

static

Access to EAlign_type's attributes (values, names) as defined in spec.

EBiomol()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CMolInfo_Base::EBiomol ( void  )

static

Access to EBiomol's attributes (values, names) as defined in spec.

ECompleteness()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CMolInfo_Base::ECompleteness ( void  )

static

Access to ECompleteness's attributes (values, names) as defined in spec.

EDb()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CSeq_annot_Base::EDb ( void  )

static

Access to EDb's attributes (values, names) as defined in spec.

ELinkage()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CSeq_gap_Base::ELinkage ( void  )

static

Access to ELinkage's attributes (values, names) as defined in spec.

EMol()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CSeq_inst_Base::EMol ( void  )

static

Access to EMol's attributes (values, names) as defined in spec.

EReftype()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CPubdesc_Base::EReftype ( void  )

static

Access to EReftype's attributes (values, names) as defined in spec.

ERepr()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CSeq_inst_Base::ERepr ( void  )

static

Access to ERepr's attributes (values, names) as defined in spec.

EStrand()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CSeq_inst_Base::EStrand ( void  )

static

Access to EStrand's attributes (values, names) as defined in spec.

ETech()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CMolInfo_Base::ETech ( void  )

static

Access to ETech's attributes (values, names) as defined in spec.

ETopology()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CSeq_inst_Base::ETopology ( void  )

static

Access to ETopology's attributes (values, names) as defined in spec.

EType() [1/3]

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CLinkage_evidence_Base::EType ( void  )

static

Access to EType's attributes (values, names) as defined in spec.

EType() [2/3]

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CNum_ref_Base::EType ( void  )

static

Access to EType's attributes (values, names) as defined in spec.

EType() [3/3]

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CSeq_gap_Base::EType ( void  )

static

Access to EType's attributes (values, names) as defined in spec.

Get() [1/6]

const CAnnot_descr_Base::Tdata & CAnnot_descr_Base::Get ( void  ) const

inline

Get the member data.

Returns

Reference to the member data.

Definition at line 164 of file Annot_descr_.hpp.

References CAnnot_descr_Base::m_data.

Referenced by CBedTrackRecord::Assign(), BOOST_AUTO_TEST_CASE(), CBedObjectLoader::Execute(), CVcfObjectLoader::Execute(), CWigObjectLoader::Execute(), CSeq_annot_Finder::Find(), CSeqUtils::GetAnnotUserField(), CBamUtils::GetCoverageGraphInfo(), NSnp::GetCreateTime(), CWriteUtil::GetDescriptor(), CAnnotObject_Info::GetLocsTypes(), CAnnotObject_Info::GetMaps(), CSeq_annot_SplitInfo::GetName(), CSGSeqGraphJob::GetSeqtableAnnots(), CReadUtil::GetTrackValue(), CSeqTableReader::Init(), MakeCompartments(), NSnpBins::ReadAnnotDesc(), s_CollapseProjectFolder(), s_GetAnnotContent(), s_GetAnnotName(), s_GetVcfMetaInfo(), s_IsMatchById(), s_IsSameSeqAnnot(), s_RetainEmptyAnnot(), CValidError_annot::ValidateSeqAnnot(), CUCSCRegionWriter::WriteAnnot(), CBedWriter::WriteAnnot(), CGvfWriter::WriteHeader(), CFeatureItem::x_AddQualSeqfeatNote(), CFlatGatherer::x_AnnotComments(), CBioseqContext::x_CheckForShowComments(), CAdvancedAlignCleanup::x_CleanupProsplignCompartment(), CFlatGatherer::x_GetAnnotDescStrucCommentFromBioseqHandle(), CBamRefSeqInfo::x_LoadRangesCov(), CSGAnnotJob::x_PercentileButNotMax(), CProSplignJob::x_ProcessCompartment(), CAttribTableColumnIdPanel::x_TableReaderCommon(), CSeq_annot_Info::x_UpdateName(), CVcfWriter::x_WriteMetaCreateNew(), and CWiggleWriter::xWriteTrackLine().

Get() [2/6]

const CDelta_ext_Base::Tdata & CDelta_ext_Base::Get ( void  ) const

inline

Get the member data.

Returns

Reference to the member data.

Definition at line 164 of file Delta_ext_.hpp.

References CDelta_ext_Base::m_data.

Referenced by CDelta_ext::AddLiteral(), CConvertGapsBySize::apply(), CExpandGaps::apply(), CEditSelectedGaps::apply_impl(), CCombineAdjacentGaps::apply_impl(), CFastaReader::AssembleSeq(), BOOST_AUTO_TEST_CASE(), CBioseqIndex::CBioseqIndex(), CGapsEditor::ConvertNs2Gaps(), CBlobSplitterImpl::CopySequence(), CSeqMap::CSeqMap(), ExtractExtraIds(), fta_check_con_for_wgs(), g_DoesNotReferencePrimary(), CAddLinkageToGaps::GetCommand(), GetDeltaSeqForPosition(), GetDeltaSeqSummary(), CLocusItem::GetDivision(), CBlobSplitterImpl::GetLength(), HasAssemblyOrNullGap(), CValidError_bioseq::HasBadWGSGap(), CConvertBadCdsAndRnaToMiscFeat::IsExtendableLeft(), IsExtendableLeft(), CConvertBadCdsAndRnaToMiscFeat::IsExtendableRight(), IsExtendableRight(), CValidError_bioseq::IsSelfReferential(), CBioseq::PackAsDeltaSeq(), CValidError_bioseq::ReportBadAssemblyGap(), CAsnCacheTestApplication::Run(), s_FixBioseqDeltas(), s_GetFlankingGapTypes(), s_GetUngapLoc(), s_HasRawSequence(), s_IntervalsMatchGaps(), s_IsConWithGaps(), CUpdateSeq_Input::s_IsDeltaWithFarPointers(), CUpdateSeq_Input::s_IsDeltaWithNoGaps(), s_NsAreGaps(), s_ProcessIntraScaffoldTail(), s_SeqMapForHandle(), CHangScorer::ScoreAlignments(), SetLocationSkipGap(), Split_Qscore_SeqGraph_By_DeltaSeq(), CAssemblyGapValidator::Validate(), CValidError_bioseq::ValidateDelta(), CFastaOstream::Write(), CFeatureGenerator::SImplementation::x_CreateProteinBioseq(), CPrimeCacheApplication::x_ExtractDelta(), CSingleFeatValidator::x_FindStartOfGap(), CCommonComponentScorer::x_GetDeltaExtCompList(), CValidError_bioseq::x_HasGap(), CSeq_loc_Mapper::x_InitGCSequence(), CValidError_bioseq::x_IsDeltaLitOnly(), CBioseqContext::x_IsDeltaLitOnly(), CGencollIdMapper::x_IsLoc_Int_InAGap(), CValidError_bioseq::x_IsRangeGap(), CValidError_bioseq::x_ParentAndComponentLocationsDiffer(), CGC_Assembly_Parser::x_ParseGCSequence(), CUnorderedSplitter::x_SplitDeltaExt(), CAgpConverter::x_VerifyComponents(), CForeignContaminationScreenReportReader::xCheckLen(), and xf_IsDeltaLitOnly().

Get() [3/6]

const CMap_ext_Base::Tdata & CMap_ext_Base::Get ( void  ) const

inline

Get the member data.

Returns

Reference to the member data.

Definition at line 164 of file Map_ext_.hpp.

References CMap_ext_Base::m_data.

Referenced by CBioseqIndex::CBioseqIndex(), CSequenceTrack::CSequenceTrack(), and CDeflineGenerator::x_SetFlags().

Get() [4/6]

const CSeq_loc & CRef_ext_Base::Get ( void  ) const

inline

Definition at line 101 of file Ref_ext_.hpp.

Referenced by CBioseq_Info::x_CalcBioseqLength().

Get() [5/6]

const CSeg_ext_Base::Tdata & CSeg_ext_Base::Get ( void  ) const

inline

Get the member data.

Returns

Reference to the member data.

Definition at line 164 of file Seg_ext_.hpp.

References CSeg_ext_Base::m_data.

Referenced by CSeqMap::CSeqMap(), CValidError_bioseq::GetLocFromSeq(), CMasterContext::GetPartNumber(), s_AddPartToSegmentedBioseq(), CValidError_bioseq::ValidateSegRef(), CValidError_bioseq::ValidateSeqParts(), CBioseq_Info::x_CalcBioseqLength(), CContigItem::x_GatherInfo(), and CMasterContext::x_SetNumParts().

Get() [6/6]

const CSeq_descr_Base::Tdata & CSeq_descr_Base::Get ( void  ) const

inline

Get the member data.

Returns

Reference to the member data.

Definition at line 166 of file Seq_descr_.hpp.

References CSeq_descr_Base::m_data.

Referenced by AddLocalIdUserObjects(), AddMasterDescr(), CWGSDb_Impl::AddMasterDescr(), CNewCleanup_imp::AddProteinTitles(), CBioseq_Base_Info::AddSeq_descr(), CBlobSplitterImpl::AttachToSkeleton(), CDiscrepancyContext::AutofixBioseq(), CDiscrepancyContext::AutofixBioseq_set(), CDiscrepancyContext::AutofixSeq_descr(), CSequesterSets::BioseqSetDescriptorPropagateDown(), BioseqSetDescriptorPropagateUp(), CSequesterSets::BioseqSetDescriptorPropagateUp(), BOOST_AUTO_TEST_CASE(), BuildProtBioseqSet(), CheckHost(), CheckLocalId(), CheckSegDescrChoice(), CollectDescriptors(), CSeq_descr_SplitInfo::Compare(), CompareDescrFeatSources(), CWithdrawSequences::CopyDescrToEntry(), CBlobSplitterImpl::CopySkeleton(), extractBioseqInfo(), CBlastDBExtractor::ExtractTitle(), CFindPub::find_pub(), FindUnverified(), FixDupDates(), FixEmblUpdateDates(), fta_tsa_tls_comment_dblink_check(), CValidError_imp::GatherTentativeName(), GenBankAsciiOrig(), GenerateDiffListFromBioSource(), GenerateDiffListFromDescriptors(), get_title(), GetBioseqDiffs(), GetBioseqForSeqdesc(), GetBioseqSetDescrTitle(), CDUpdater::GetBlastDefline(), CBioseq::GetClosestDescriptor(), AlignmentCollection::GetDefline(), GetDescrByChoice(), CEditObjectSet::GetEditCommand(), GetMolInfo(), variation::CVariationUtil::GetMolType(), IAlignRowHandle::GetOrgLabel(), CTable2AsnContext::GetOrgName(), GetPDBBlockFromSeqEntry(), GetProtRefDescr(), CBlastQuerySourceBioseqSet::GetSegmentInfo(), GetSegSetDblink(), CWGSSeqIterator::GetSeq_descr(), CWGSScaffoldIterator::GetSeq_descr(), CWGSProteinIterator::GetSeq_descr(), CAlignFormatUtil::GetSeqDescrString(), CMolinfo_field::GetSequenceQualFromBioseq(), GetSourceDescriptors(), GetSpeciesFromBioseq(), TaxClient::GetTaxIDFromBioseq(), GetTaxIdInBioseq(), CBlastQuerySourceBioseqSet::GetTitle(), GuessGeneticCode(), HasRepairedIDs(), CWriteUtil::IsNucleotideSequence(), CWriteUtil::IsProteinSequence(), IsPubInSet(), variation::IsRefSeqGene(), variation::IsRightPartial(), CSeqEntrySource::IsUnverified(), IsUnverifiedContaminant(), IsUnverifiedFeature(), IsUnverifiedMisassembled(), IsUnverifiedOrganism(), CValidError_bioseq::IsWGS(), CMultiReader::LoadDescriptors(), CWGSMasterDescrSetter::Loaded(), CMultiReader::LoadTemplate(), CAutoAddDesc::LocateDesc(), CBlobSplitterImpl::MakeID2Chunk(), CTable2AsnContext::MergeSeqDescr(), MoveBiomolToTop(), CRemoveSet::MoveDescrToEntries(), CSegregateSetsBase::MoveDescrToEntries(), MoveSourceDescrToTop(), seqsubmit_split::NeedToInclude(), no_reference(), CDiscrepancyContext::PopulateBioseq(), CDiscrepancyContext::PopulateSeqSet(), CSeq_descr::PostRead(), CSeq_descr::PreWrite(), PrintASN1(), PropagateDBLink(), PropogateSuppliedLineage(), CNewCleanup_imp::ProtSeqBC(), CCleanup::PubAlreadyInSet(), CDUpdater::reformatBioseq(), CCleanup::RemoveUnseenTitles(), RemoveUserObjectType(), CAgpconvertApplication::Run(), s_AddSeqTitleToPssm(), s_AutoDefUserObjectFromBioseq(), s_CheckForSegments(), s_GetDescriptor(), s_GetFastaDefline(), s_GetInfluenzaLabel(), s_GetOrgModNatHost(), s_GetQualityString(), s_GetSequenceId(), s_GetSourceDescriptors(), s_GetSourceSubtype(), s_GetTaxId(), s_GetTitle(), s_HasDescriptorOfType(), s_HasTitle(), s_HasWGSTech(), s_IsRefSeqGene(), CMacroFunction_RefreshDefline::s_RefreshDeflineCommand(), CValidErrorFormat::SetSuppressionRules(), CValidError_bioseqset::ShouldHaveNoDblink(), ShowOrgRef(), SimplifyBioseqForCD(), CReadInSkipObjectHook< Object >::SkipObject(), CBioseq_Info::sx_ShallowCopy(), CBioseq_set_Info::sx_ShallowCopy(), TrimEntry(), CValidError_bioseq::ValidateSeqGap(), CValidError_bioseqset::ValidateSetTitle(), CVdbFastaExtractor::Write(), CCleanupHugeAsnReader::x_AddTopLevelDescriptors(), x_ApplyCmd(), CWriteDB_Impl::x_BuildDeflinesFromBioseq(), CNewCleanup_imp::x_ClearEmptyDescr(), CNewCleanup_imp::x_CollapseSet(), CGC_Assembly_Parser::x_CopyData(), CPhrap_Read::x_CreateDesc(), CPhrap_Contig::x_CreateDesc(), CSubmissionWizard::x_ExtractDescriptors(), CWriteDB_Impl::x_GetBioseqBinaryHeader(), CBioseq_Base_Info::x_GetDescList(), CWriteDB_Impl::x_GetFastaReaderDeflines(), x_GetMolLocTypeUserObj(), CDumpASNIndex::x_GetTaxId(), CCommonComponentScorer::x_GetUserCompList(), CWGSFileInfo::x_InitMasterDescr(), CSeqMasterIndex::x_InitSeqs(), CAgpconvertApplication::x_LoadTemplate(), CMakeProfileDBApp::x_MakeVol(), CNewCleanup_imp::x_MoveNpDBlinks(), CGC_Assembly_Parser::x_ParseGCSequence(), CPrimeCacheApplication::x_Process_Fasta(), CBioseq_Base_Info::x_RealLoadDescr(), CNewCleanup_imp::x_RemoveDupBioSource(), variation_ref::CHgvsParser::x_SeqIdToHgvsHeader(), CAgpConverter::x_SetChromosomeNameInSourceSubtype(), CStartItem::x_SetDate(), CGffFeatureContext::xAssignSequenceHasBioSource(), CGffFeatureContext::xAssignSequenceIsGenomicRecord(), seqsubmit_split::CSeqSubSplitter::xFlattenSeqEntry(), CBsDiffApp::xGetBioSampleAccs(), CBsDiffApp::xGetBioSource(), seqsubmit_split::CSeqSubSplitter::xMergeSeqDescr(), and XMLAscii().

GetA()

CNum_real_Base::TA CNum_real_Base::GetA ( void  ) const

inline

Get the A member data.

Returns

Copy of the member data.

Definition at line 261 of file Num_real_.hpp.

References CNum_real_Base::CanGetA(), CNum_real_Base::m_A, and CSerialObject::ThrowUnassigned().

GetAccession()

const CTextannot_id_Base::TAccession & CTextannot_id_Base::GetAccession ( void  ) const

inline

Get the Accession member data.

Returns

Reference to the member data.

Definition at line 346 of file Textannot_id_.hpp.

References CTextannot_id_Base::CanGetAccession(), CTextannot_id_Base::m_Accession, and CSerialObject::ThrowUnassigned().

Referenced by CSeq_annot_SplitInfo::GetName(), and CSeq_annot_Info::x_UpdateName().

GetAlign() [1/2]

const CAnnotdesc_Base::TAlign & CAnnotdesc_Base::GetAlign

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 272 of file Annotdesc_.cpp.

References CAnnotdesc_Base::CheckSelected(), CAnnotdesc_Base::e_Align, and CAnnotdesc_Base::m_object.

Referenced by CAdvancedAlignCleanup::x_CleanupProsplignCompartment(), and CProSplignJob::x_ProcessCompartment().

GetAlign() [2/2]

const CSeq_annot_Base::C_Data::TAlign & CSeq_annot_Base::C_Data::GetAlign ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 641 of file Seq_annot_.hpp.

Referenced by BOOST_AUTO_TEST_CASE(), Convert_Seq_annot_Seq_align(), Convert_Seq_annot_Seq_loc_All(), Convert_Seq_annot_Seq_loc_TotalRange(), CSeq_annot_SplitInfo::CountAnnotObjects(), CTableDataAlnSummary::CTableDataAlnSummary(), CMAViewManager::DoTransition(), AnnotObjTrait< CSeq_align >::GetCont(), GetDenDiagSet(), CCdCore::GetNumRows(), CMAViewManager::NeedAnchorPanel(), CEditsSaver::Remove(), CAlignCleanupApplication::Run(), CTestBlastp_All::RunTest(), s_GetAnnotContent(), CRemoveSeqFromAlignDlg::SearchSeq_entry(), CSeq_annot_SplitInfo::SetSeq_annot(), TestSimpleAlignment(), CValidError_annot::ValidateSeqAnnot(), CAlnWriter::WriteAnnot(), CPslWriter::WriteAnnot(), CUpdateMultiSeq_Dlg::x_CreateAlignmentForIdenticalUpdates(), CBLASTSeqToolJob::x_CreateProjectItems(), CGroupAlignmentsJob::x_CreateProjectItems(), CUpdateMultiSeq_Dlg::x_GenerateAlignments(), CAppHitFilter::x_ReadInputHits(), and CSplitDataLoader::x_SplitAligns().

GetAlign_group()

CPubdesc_Base::TAlign_group CPubdesc_Base::GetAlign_group ( void  ) const

inline

Get the Align_group member data.

Returns

Copy of the member data.

Definition at line 945 of file Pubdesc_.hpp.

References CPubdesc_Base::CanGetAlign_group(), CPubdesc_Base::m_Align_group, and CSerialObject::ThrowUnassigned().

GetAlign_type()

CAlign_def_Base::TAlign_type CAlign_def_Base::GetAlign_type ( void  ) const

inline

Get the Align_type member data.

Returns

Copy of the member data.

Definition at line 227 of file Align_def_.hpp.

References CAlign_def_Base::CanGetAlign_type(), CAlign_def_Base::m_Align_type, and CSerialObject::ThrowUnassigned().

GetAligns()

const CNum_ref_Base::TAligns & CNum_ref_Base::GetAligns ( void  ) const

inline

Get the Aligns member data.

Returns

Reference to the member data.

Definition at line 268 of file Num_ref_.hpp.

References CNum_ref_Base::CanGetAligns(), CNum_ref_Base::m_Aligns, and CSerialObject::ThrowUnassigned().

GetAnnot()

const CBioseq_Base::TAnnot & CBioseq_Base::GetAnnot ( void  ) const

inline

Get the Annot member data.

Returns

Reference to the member data.

Definition at line 366 of file Bioseq_.hpp.

References CBioseq_Base::m_Annot.

Referenced by AddFeat(), AddFeatureToBioseq(), CReadBlastApp::addLocation(), CReadBlastApp::AnalyzeSeqsViaBioseqs(), CDiscrepancyContext::AutofixBioseq(), CheckMiscPartialErrors(), CkCdRegion(), CReadBlastApp::collectPerfectHits(), CBlobSplitterImpl::CopySkeleton(), CReadBlastApp::fit_blast(), fta_collect_genes(), GetEmblDescr(), GetGenBankDescr(), CReadBlastApp::getGenomicInterval(), CReadBlastApp::getGenomicLocation(), CReadBlastApp::getLocusTag(), GetMMDBId(), CReadBlastApp::GetProtName(), GetProtRefDescr(), CReadBlastApp::has_blast_hits(), CReadBlastApp::hasGenomicInterval(), CReadBlastApp::hasGenomicLocation(), CCleanup::MoveFeatToProtein(), CFeatureTableReader::MoveRegionsToProteins(), no_reference(), CDiscrepancyContext::PopulateBioseq(), CFeatureTableReader::RemoveEmptyFtable(), s_GetClipLoc(), s_GetQualityString(), s_HasUnprocessedCdregions(), CClippedScorer::ScoreAlignments(), CBioseq_Info::sx_ShallowCopy(), CdBlaster::truncateBioseq(), objects::VisitAllFeatures(), CQualScoreWriter::Write(), CSeqMasterIndex::x_InitSeqs(), CNewCleanup_imp::x_IsCommentRedundantWithEC(), CBamRefSeqInfo::x_LoadRangesCov(), CNewCleanup_imp::x_MoveCdregionXrefsToProt(), CNewCleanup_imp::x_RemoveEmptyFeatureTables(), CNewCleanup_imp::x_SeqFeatCDSGBQualBC(), CGff3Writer::x_WriteBioseqHandle(), CQualScoreWriter::x_WriteHeader(), and CFeatureTableReader::xParseCdregions().

GetAscending()

CNum_cont_Base::TAscending CNum_cont_Base::GetAscending ( void  ) const

inline

Get the Ascending member data.

Returns

Copy of the member data.

Definition at line 372 of file Num_cont_.hpp.

References CNum_cont_Base::m_Ascending.

GetAssembly()

const CSeq_hist_Base::TAssembly & CSeq_hist_Base::GetAssembly ( void  ) const

inline

Get the Assembly member data.

Returns

Reference to the member data.

Definition at line 512 of file Seq_hist_.hpp.

References CSeq_hist_Base::m_Assembly.

Referenced by BOOST_AUTO_TEST_CASE(), CValidError_bioseq::CheckTpaHistory(), CSeq_hist_SplitInfo::CSeq_hist_SplitInfo(), GetAllSwitchPoints(), CBioseq::GetNonLocalId(), CCommentItem::GetStringForTPA(), RestoreModelFromInternalGnomonFeature(), RestoreModelFromPublicMrnaFeature(), CCreateSeqHistForTpa::ValidateAlignments(), CSGSwitchPointJob::x_Execute(), CPrimaryItem::x_GatherInfo(), CCommonComponentScorer::x_GetSeqHistCompList(), and CPrimaryItem::x_GetStrForPrimary().

GetB()

CNum_real_Base::TB CNum_real_Base::GetB ( void  ) const

inline

Get the B member data.

Returns

Copy of the member data.

Definition at line 308 of file Num_real_.hpp.

References CNum_real_Base::CanGetB(), CNum_real_Base::m_B, and CSerialObject::ThrowUnassigned().

GetBiomol()

CMolInfo_Base::TBiomol CMolInfo_Base::GetBiomol ( void  ) const

inline

Get the Biomol member data.

Returns

Copy of the member data.

Definition at line 447 of file MolInfo_.hpp.

References CMolInfo_Base::m_Biomol.

Referenced by AddDefaultSentinelFeats(), AdjustProteinMolInfoToMatchCDS(), CMolInfoEditDlg::ApplyToMolInfo(), CValidError_bioseqset::CheckForInconsistentBiomols(), FinalCleanup(), CFlatFileGenerator::Generate(), CWriteUtil::GetBiomol(), CBioseqContext::GetBiomol(), CMolInfo::GetLabel(), variation::CVariationUtil::GetMolType(), CMolinfo_field::GetSequenceQualFromBioseq(), GetTitle(), CValidError_feat::GetTSACDSOnMinusStrandErrors(), CMolInfoField::GetVal(), CEditingActionMolInfoMolecule::GetValue(), CValidError_bioseq::IsMrna(), CSeqTextDataSource::IsmRNASequence(), CValidError_imp::IsOtherDNA(), CMolInfoSubpanel::OnSelectButton(), CAdjustForConsensusSpliceSite::s_IsBioseqGood_AdjustEnds(), s_UpdateGlobalInfo(), CMolInfoSubpanel::SetClusters(), CCleanup::SetMolinfoBiomol(), CReadInSkipObjectHook< Object >::SkipObject(), CMolTypeValidator::Validate(), CValidError_imp::ValidateBioSourceForSeq(), CValidError_desc::ValidateMolInfo(), CValidError_bioseq::ValidateMolInfoContext(), CSubmissionWizard::x_ApplyMolinfoToRecords(), CNewCleanup_imp::x_ExtendSingleGeneOnMrna(), CNewCleanup_imp::x_FixUnsetMolFromBiomol(), CAsn2FastaApp::x_GetFastaOstream(), CAutoDef::x_GetOneNonFeatureClause(), CBioseqIndex::x_InitDescs(), CPrimeCacheApplication::x_Process_Fasta(), CSplignTool::x_SelectCompatibleInputObjects(), CAutoDefFeatureClause::x_SetBiomol(), CLocusItem::x_SetBiomol(), CDeflineGenerator::x_SetFlags(), CFeatureGenerator::SImplementation::x_SetQualForGapFilledModel(), CValidError_bioseq::x_ValidateAbuttingRNA(), CValidError_bioseq::x_ValidateAbuttingUTR(), CValidError_bioseq::x_ValidateCompletness(), CValidError_bioseq::x_ValidateMolInfoForBioSource(), CRNAValidator::x_ValidateRnaProductType(), and CGffFeatureContext::xAssignSequenceIsGenomicRecord().

GetBool()

CSeq_hist_Base::C_Deleted::TBool CSeq_hist_Base::C_Deleted::GetBool ( void  ) const

inline

Get the variant data.

Returns

Copy of the variant data.

Definition at line 473 of file Seq_hist_.hpp.

Referenced by CEditHistory::CreateControls().

GetComment() [1/3]

const CAnnotdesc_Base::TComment & CAnnotdesc_Base::GetComment ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 541 of file Annotdesc_.hpp.

References CAnnotdesc_Base::CheckSelected(), CAnnotdesc_Base::e_Comment, and CAnnotdesc_Base::m_string.

Referenced by NSnpBins::ReadAnnotDesc(), and CFlatGatherer::x_AnnotComments().

GetComment() [2/3]

const CPubdesc_Base::TComment & CPubdesc_Base::GetComment ( void  ) const

inline

Get the Comment member data.

Returns

Reference to the member data.

Definition at line 985 of file Pubdesc_.hpp.

References CPubdesc_Base::CanGetComment(), CPubdesc_Base::m_Comment, and CSerialObject::ThrowUnassigned().

Referenced by CCleanup::ConvertPubFeatsToPubDescs(), fta_strip_er_remarks(), CFindASN1Dlg::ReplaceInPubdesc(), s_FilterPubdesc(), CRemarksAndSerialNumberPanel::TransferDataToWindow(), CValidError_imp::ValidatePubdesc(), and CReferenceItem::x_GatherRemark().

GetComment() [3/3]

const CSeqdesc_Base::TComment & CSeqdesc_Base::GetComment ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 1058 of file Seqdesc_.hpp.

References CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::e_Comment, and CSeqdesc_Base::m_string.

Referenced by BOOST_AUTO_TEST_CASE(), CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), CCommentDescField::GetVal(), CEditingActionDescCommentDescriptor::GetValue(), CEditingActionDescComment::GetValue(), CCommentDescField::IsEmpty(), CFindASN1Dlg::ReplaceInDesc(), s_GetContentLabel(), CCommentDescField::SetVal(), CValidError_desc::ValidateSeqDesc(), CFeatureItem::x_AddQualProtComment(), CValidError_bioseq::x_CheckForMultipleComments(), CCommentItem::x_GatherDescInfo(), and CBioseqIndex::x_InitDescs().

GetCompleteness()

CMolInfo_Base::TCompleteness CMolInfo_Base::GetCompleteness ( void  ) const

inline

Get the Completeness member data.

Returns

Copy of the member data.

Definition at line 594 of file MolInfo_.hpp.

References CMolInfo_Base::m_Completeness.

Referenced by CCleanup::AddPartialToProteinTitle(), AdjustProteinMolInfoToMatchCDS(), CMolInfoEditDlg::ApplyToMolInfo(), BOOST_AUTO_TEST_CASE(), CkNonTerSP(), CCmdAddCDS::Execute(), CMolInfo::GetLabel(), CMolinfo_field::GetSequenceQualFromBioseq(), CCommentItem::GetStringForMolinfo(), CMolInfoField::GetVal(), CEditingActionMolInfoCompletedness::GetValue(), CValidError_bioseq::IsPartial(), variation::IsRightPartial(), s_IsBioseqPartial(), SeqLocPartialCheck(), SetMolinfoCompleteness(), SetMolInfoCompleteness(), CReadInSkipObjectHook< Object >::SkipObject(), CValidError_bioseq::ValidateBioseqContext(), CValidError_imp::ValidateBioSourceForSeq(), CValidError_bioseq::ValidateMolInfoContext(), CCmdCreateCDS::x_AddMolinfoDescriptorToProtein(), CFlatGatherer::x_HTGSComments(), CBioseqIndex::x_InitDescs(), CMacroFunction_AutodefComplete::x_IsComplete(), CPrimeCacheApplication::x_Process_Fasta(), CDeflineGenerator::x_SetFlags(), x_TitleFromChromosome(), CCdregionValidator::x_ValidateCDSPartial(), CValidError_bioseq::x_ValidateCompletness(), CProtValidator::x_ValidateMolinfoPartials(), and CValidError_bioseq::x_ValidateTitle().

GetCont()

const CNumbering_Base::TCont & CNumbering_Base::GetCont

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 114 of file Numbering_.cpp.

References CNumbering_Base::CheckSelected(), CNumbering_Base::e_Cont, and CNumbering_Base::m_object.

GetCreate_date() [1/2]

const CAnnotdesc_Base::TCreate_date & CAnnotdesc_Base::GetCreate_date

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 206 of file Annotdesc_.cpp.

References CAnnotdesc_Base::CheckSelected(), CAnnotdesc_Base::e_Create_date, and CAnnotdesc_Base::m_object.

Referenced by NSnp::GetCreateTime().

GetCreate_date() [2/2]

const CSeqdesc_Base::TCreate_date & CSeqdesc_Base::GetCreate_date

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 472 of file Seqdesc_.cpp.

References CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::e_Create_date, and CSeqdesc_Base::m_object.

Referenced by CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), SLaterDate::operator()(), s_GetContentLabel(), s_GetDate(), CValidError_desc::ValidateSeqDesc(), CValidError_bioseq::ValidateSeqDescContext(), CDateItem::x_GatherInfo(), CLocusItem::x_GetDateForBioseq(), and CStartItem::x_SetDate().

GetData()

const CSeq_annot_Base::TData & CSeq_annot_Base::GetData ( void  ) const

inline

Get the Data member data.

Returns

Reference to the member data.

Definition at line 873 of file Seq_annot_.hpp.

References CSeq_annot_Base::m_Data, and CSeq_annot_Base::ResetData().

Referenced by AlignmentCollection::addPendingAlignment(), CImportFeatTable::AddSeqAnnotToSeqEntry(), CRemoveSeqAnnot::ApplyToSeqAnot(), CDiscrepancyContext::AutofixSeq_annot(), BOOST_AUTO_TEST_CASE(), CTestBlastp::CanTest(), FeatUtil::ContainsData(), Convert_Seq_annot_Seq_align(), Convert_Seq_annot_Seq_feat(), Convert_Seq_annot_Seq_graph(), Convert_Seq_annot_Seq_id(), Convert_Seq_annot_Seq_loc_All(), Convert_Seq_annot_Seq_loc_TotalRange(), CBlobSplitterImpl::CopyAnnot(), CVariationUtilities::CorrectRefAllele(), CSeq_annot_SplitInfo::CountAnnotObjects(), CTableDataSeq_annot::CreateObject(), CTableDataAlnSummary::CTableDataAlnSummary(), DemoteCDSToNucSeq(), DoImportFTable(), CMAViewManager::DoTransition(), EraseRow(), CScore_Partial::Get(), CDataTrackUtils::GetColumnHeader(), AnnotObjTrait< CSeq_feat >::GetCont(), AnnotObjTrait< CSeq_align >::GetCont(), AnnotObjTrait< CSeq_graph >::GetCont(), CShowBlastDeflineTest::GetDeflineInfo(), GetDenDiagSet(), CDesktopAnnotItem::GetDescription(), CDataTrackUtils::GetFeatSubtypes(), CGuiObjectInfoSeq_annot::GetIcon(), GetInteractionDataFromIbis(), CSeq_annotHandler::GetLabel(), CNAUtils::GetNATrackInfo(), CAnnotationLoader::GetNextAnnot(), CCdCore::GetNumRows(), CSeq_annot_Handle::GetSeq_tableNumRows(), CGuiObjectInfoSeq_annot::GetSubtype(), CGffRecord::GetSubtypeOf(), CGuiObjectInfoSeq_annot::GetViewCategory(), CVcfTableView::GetVisibleRanges(), CTableDataFTable::Init(), CFeatTableEdit::InstantiateProductsNames(), CSeq_annot::IsAlign(), CSeq_annot_Handle::IsAlign(), CSeq_annot::IsFtable(), CSeq_annot_Handle::IsFtable(), CSeq_annot::IsGraph(), CSeq_annot_Handle::IsGraph(), CSeq_annot::IsIds(), CSeq_annot_Handle::IsIds(), CSeq_annot::IsLocs(), CSeq_annot_Handle::IsLocs(), CSeq_annot::IsSeq_table(), CSeq_annot_Handle::IsSeq_table(), CWriteUtil::IsThreeFeatFormat(), CCSRARefSeqInfo::LoadAnnotMainChunk(), CMakeCdrProds::MakeCdrProds(), CBlobSplitterImpl::MakeID2Chunk(), CBlobSplitterImpl::MakeSeq_annot(), CSeq_loc_Mapper_Base::Map(), CMAViewManager::NeedAnchorPanel(), PromoteCDSToNucProtSet(), CPromote::PromoteFeatures(), CGFFReader::Read(), ReadTabDelimitedTable(), CEditsSaver::Remove(), CAlignCleanupApplication::Run(), CGeneModelDemoApp::Run(), CFeatImportApp::Run(), CTestBlastp_All::RunTest(), CTestProtProd_Cdd::RunTest(), s_AttachAnnotToScope(), s_GetAnnotContent(), s_GetAnnotId(), s_GetAnnotType(), s_GetClipLoc(), s_GetSeqAnnotChoiceMask(), s_ReadMultipleTablesFromString(), UpdateViewer::SaveAlignments(), CClippedScorer::ScoreAlignments(), CRemoveSeqFromAlignDlg::SearchSeq_entry(), SetDenDiagSet(), CSeq_annot_SplitInfo::SetSeq_annot(), CNewCleanup_imp::ShouldRemoveAnnot(), SrchCdRegion(), sRunTest(), CMytestApplication::TestFeatureGeneOverlap(), TestSimpleAlignment(), CCmdPromoteCDS::Unexecute(), CValidError_annot::ValidateSeqAnnot(), CValidError_annot::ValidateSeqAnnotContext(), CVecscreenTest::VecscreenDisplay(), CSeq_annot_Handle::Which(), CUCSCRegionWriter::WriteAnnot(), CAlnWriter::WriteAnnot(), CPslWriter::WriteAnnot(), CSequenceEditingEventHandler::x_CacheSelectedLocations(), CImportFeatTable::x_CheckCollidingIds(), CImportFeatTable::x_CheckConsistentProteinIds(), CImportFeatTable::x_ContainsDuplicateIds(), CUpdateMultiSeq_Dlg::x_CreateAlignmentForIdenticalUpdates(), CImportFeatTable::x_CreateCommand(), CGFFReader::x_CreateGeneFeatures(), CBLASTSeqToolJob::x_CreateProjectItems(), CGroupAlignmentsJob::x_CreateProjectItems(), CUpdateMultiSeq_Dlg::x_GenerateAlignments(), CProjectFileWriter::x_GetAnnotId(), CAlignFilter::x_GetRegionMap(), CCreateGeneModelTask::x_Group_By_GeneID(), CID2SNPProcessor_Impl::x_LoadBlob(), CSGSegmentSmearJob::x_LoadFromNA(), CBamRefSeqInfo::x_LoadRangesCov(), CAppHitFilter::x_ReadInputHits(), CWiggleExportJob::x_RecalculateGraph(), CVariationNormalization_base< T >::x_Shift(), CSplitDataLoader::x_SplitAligns(), CSplitDataLoader::x_SplitAnnot(), CSplitDataLoader::x_SplitFeats(), CSplitDataLoader::x_SplitGraphs(), CCreateGeneModelTask::x_StoreGeneratedFeats(), CFormatGuessEx::x_TryBed15(), CFormatGuessEx::x_TryWiggle(), CModifySeqId::x_UpdateSeqAnnot(), CGff2Reader::xAssignAnnotId(), CMultiReaderApp::xPostProcessAnnot(), CWiggleReader::xPostProcessAnnot(), CMultiReaderApp::xProcess5ColFeatTable(), CMultiReaderApp::xProcessRmo(), CBedGraphWriter::xWriteAnnotFeatureTable(), CBedGraphWriter::xWriteAnnotGraphs(), CWiggleWriter::xWriteAnnotGraphs(), CBedGraphWriter::xWriteAnnotSeqTable(), and CWiggleWriter::xWriteAnnotTable().

GetDate() [1/2]

const CSeq_hist_Base::C_Deleted::TDate & CSeq_hist_Base::C_Deleted::GetDate

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 102 of file Seq_hist_.cpp.

Referenced by CEditHistory::CreateControls().

GetDate() [2/2]

const CSeq_hist_rec_Base::TDate & CSeq_hist_rec_Base::GetDate ( void  ) const

inline

Get the Date member data.

Returns

Reference to the member data.

Definition at line 209 of file Seq_hist_rec_.hpp.

References CSeq_hist_rec_Base::CanGetDate(), CSeq_hist_rec_Base::m_Date, and CSerialObject::ThrowUnassigned().

Referenced by CEditHistory::CreateControls(), s_CreateHistCommentString(), and x_FindLatestSequence().

GetDb()

CSeq_annot_Base::TDb CSeq_annot_Base::GetDb ( void  ) const

inline

Get the Db member data.

Returns

Copy of the member data.

Definition at line 765 of file Seq_annot_.hpp.

References CSeq_annot_Base::CanGetDb(), CSeq_annot_Base::m_Db, and CSerialObject::ThrowUnassigned().

Referenced by CBlobSplitterImpl::MakeSeq_annot(), CSeq_annot_Handle::Seq_annot_GetDb(), and CAnnotGetter::x_GetCompleteSeqAnnot().

GetDbxref()

const CSeqdesc_Base::TDbxref & CSeqdesc_Base::GetDbxref

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 428 of file Seqdesc_.cpp.

References CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::e_Dbxref, and CSeqdesc_Base::m_object.

Referenced by CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), and s_GetContentLabel().

GetDeleted()

const CSeq_hist_Base::TDeleted & CSeq_hist_Base::GetDeleted ( void  ) const

inline

Get the Deleted member data.

Returns

Reference to the member data.

Definition at line 579 of file Seq_hist_.hpp.

References CSeq_hist_Base::CanGetDeleted(), CSeq_hist_Base::m_Deleted, and CSerialObject::ThrowUnassigned().

Referenced by CBlobSplitterImpl::CopySequence(), and CEditHistory::CreateControls().

GetDelta()

const CSeq_ext_Base::TDelta & CSeq_ext_Base::GetDelta

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 180 of file Seq_ext_.cpp.

References CSeq_ext_Base::CheckSelected(), CSeq_ext_Base::e_Delta, and CSeq_ext_Base::m_object.

Referenced by CConvertGapsBySize::apply(), CExpandGaps::apply(), CEditSelectedGaps::apply_impl(), CCombineAdjacentGaps::apply_impl(), BOOST_AUTO_TEST_CASE(), CBioseqIndex::CBioseqIndex(), CGapsEditor::ConvertNs2Gaps(), CBlobSplitterImpl::CopySequence(), CSeqMap::CSeqMap(), ExtractExtraIds(), fta_check_con_for_wgs(), fta_create_wgs_seqid(), CAddLinkageToGaps::GetCommand(), CModifySeqId::GetCommand(), GetDeltaSeqForPosition(), GetDeltaSeqSummary(), CLocusItem::GetDivision(), CBlobSplitterImpl::GetLength(), CValidError_graph::GetUngappedSeqLen(), HasAssemblyOrNullGap(), CValidError_bioseq::HasBadWGSGap(), CConvertBadCdsAndRnaToMiscFeat::IsExtendableLeft(), IsExtendableLeft(), CConvertBadCdsAndRnaToMiscFeat::IsExtendableRight(), IsExtendableRight(), CValidError_bioseq::IsSelfReferential(), CValidError_bioseq::ReportBadAssemblyGap(), CAsnCacheTestApplication::Run(), s_GetFlankingGapTypes(), s_GetUngapLoc(), s_HasRawSequence(), s_IntervalsMatchGaps(), s_IsConWithGaps(), CUpdateSeq_Input::s_IsDeltaWithFarPointers(), CUpdateSeq_Input::s_IsDeltaWithNoGaps(), s_NsAreGaps(), s_ProcessIntraScaffoldTail(), s_SeqMapForHandle(), SetLocationSkipGap(), Split_Qscore_SeqGraph_By_DeltaSeq(), CAssemblyGapValidator::Validate(), CValidError_bioseq::ValidateCompleteGenome(), CValidError_bioseq::ValidateDelta(), CFastaOstream::Write(), CBioseq_Info::x_CalcBioseqLength(), CFeatureGenerator::SImplementation::x_CreateProteinBioseq(), CPrimeCacheApplication::x_ExtractDelta(), CSingleFeatValidator::x_FindStartOfGap(), CCommonComponentScorer::x_GetDeltaExtCompList(), CValidError_bioseq::x_HasGap(), CValidError_bioseq::x_IsDeltaLitOnly(), CBioseqContext::x_IsDeltaLitOnly(), CValidError_bioseq::x_IsRangeGap(), CValidError_bioseq::x_ParentAndComponentLocationsDiffer(), CUnorderedSplitter::x_SplitDeltaExt(), CValidError_graph::x_ValidateGraphOnDeltaBioseq(), CAgpConverter::x_VerifyComponents(), CForeignContaminationScreenReportReader::xCheckLen(), and xf_IsDeltaLitOnly().

GetDesc()

const CSeq_annot_Base::TDesc & CSeq_annot_Base::GetDesc ( void  ) const

inline

Get the Desc member data.

Returns

Reference to the member data.

Definition at line 852 of file Seq_annot_.hpp.

References CSeq_annot_Base::CanGetDesc(), CSeq_annot_Base::m_Desc, and CSerialObject::ThrowUnassigned().

Referenced by CBedTrackRecord::Assign(), BOOST_AUTO_TEST_CASE(), CVcfObjectLoader::Execute(), CSeq_annot_Finder::Find(), CSeqUtils::GetAnnotUserField(), CBamUtils::GetCoverageGraphInfo(), CWriteUtil::GetDescriptor(), CAnnotObject_Info::GetLocsTypes(), CAnnotObject_Info::GetMaps(), CSeq_annot_SplitInfo::GetName(), CReadUtil::GetTrackValue(), MakeCompartments(), CBlobSplitterImpl::MakeSeq_annot(), s_CollapseProjectFolder(), s_GetAnnotContent(), s_GetAnnotName(), s_GetVcfMetaInfo(), s_IsMatchById(), s_RetainEmptyAnnot(), s_SetSearchParam(), CSeq_annot_Handle::Seq_annot_GetDesc(), CValidError_annot::ValidateSeqAnnot(), CUCSCRegionWriter::WriteAnnot(), CBedWriter::WriteAnnot(), CGvfWriter::WriteHeader(), CAdvancedAlignCleanup::x_CleanupProsplignCompartment(), CAnnotGetter::x_GetCompleteSeqAnnot(), CBamRefSeqInfo::x_LoadRangesCov(), CSGAnnotJob::x_PercentileButNotMax(), CProSplignJob::x_ProcessCompartment(), CSeq_annot_Info::x_UpdateName(), CVcfWriter::x_WriteMetaCreateNew(), CWiggleWriter::xWriteAnnotGraphs(), and CWiggleWriter::xWriteAnnotTable().

GetDescr()

const CBioseq_Base::TDescr & CBioseq_Base::GetDescr ( void  ) const

inline

Get the Descr member data.

Returns

Reference to the member data.

Definition at line 315 of file Bioseq_.hpp.

References CBioseq_Base::CanGetDescr(), CBioseq_Base::m_Descr, and CSerialObject::ThrowUnassigned().

Referenced by AddLocalIdUserObjects(), CWGSDb_Impl::AddMasterDescr(), CNewCleanup_imp::AddProteinTitles(), AddSeqdescToBioseq(), CDiscrepancyContext::AutofixBioseq(), BOOST_AUTO_TEST_CASE(), CheckHost(), CheckLocalId(), CollectDescriptors(), CompareDescrFeatSources(), CBlobSplitterImpl::CopySkeleton(), CSeqEntrySource::CSeqEntrySource(), extractBioseqInfo(), CBlastDBExtractor::ExtractTitle(), FindUnverified(), fta_tsa_tls_comment_dblink_check(), GenBankAsciiOrig(), get_title(), GetBioseq(), GetBioseqForSeqdesc(), CDUpdater::GetBlastDefline(), AlignmentCollection::GetDefline(), GetDescrPointer(), GetMolInfo(), GetPDBBlockFromSeqEntry(), GetProtRefDescr(), CBlastQuerySourceBioseqSet::GetSegmentInfo(), CAlignFormatUtil::GetSeqDescrString(), CMolinfo_field::GetSequenceQualFromBioseq(), GetSpeciesFromBioseq(), CBioseq::GetTaxId(), TaxClient::GetTaxIDFromBioseq(), GetTaxIdInBioseq(), CBlastQuerySourceBioseqSet::GetTitle(), HasRepairedIDs(), IsUnverifiedContaminant(), IsUnverifiedFeature(), IsUnverifiedMisassembled(), IsUnverifiedOrganism(), CValidError_bioseq::IsWGS(), MoveBiomolToTop(), no_reference(), CApplyMods::operator()(), CDiscrepancyContext::PopulateBioseq(), PrintASN1(), PropogateSuppliedLineage(), CNewCleanup_imp::ProtSeqBC(), RemoveUserObjectType(), CAgpconvertApplication::Run(), s_AddSeqTitleToPssm(), s_AutoDefUserObjectFromBioseq(), s_GetFastaDefline(), s_GetQualityString(), s_GetSequenceId(), s_GetTitle(), s_HasDescriptorOfType(), s_HasTitle(), s_HasWGSTech(), CSequenceEditingEventHandler::SaveDescriptors(), CValidErrorFormat::SetSuppressionRules(), ShowOrgRef(), SimplifyBioseqForCD(), SrchSegDescr(), CBioseq_Info::sx_ShallowCopy(), TrimEntry(), CTable2AsnContext::UpdateTaxonFromTable(), CValidError_bioseq::ValidateBioseq(), CValidError_bioseq::ValidateSeqGap(), CVdbFastaExtractor::Write(), CWriteDB_Impl::x_BuildDeflinesFromBioseq(), CNewCleanup_imp::x_CleanupGenbankBlock(), CNewCleanup_imp::x_ClearEmptyDescr(), CSubmissionWizard::x_ExtractDescriptorsFromSeqEntry(), CWriteDB_Impl::x_GetBioseqBinaryHeader(), CWriteDB_Impl::x_GetFastaReaderDeflines(), CDumpASNIndex::x_GetTaxId(), CSeqMasterIndex::x_InitSeqs(), CMakeProfileDBApp::x_MakeVol(), CAgpConverter::x_SetChromosomeNameInSourceSubtype(), CMakeProfileDBApp::x_UpdateCobalt(), and XMLAscii().

GetEmbl()

const CSeqdesc_Base::TEmbl & CSeqdesc_Base::GetEmbl

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 450 of file Seqdesc_.cpp.

References CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::e_Embl, and CSeqdesc_Base::m_object.

Referenced by CValidError_bioseq::IsHistAssemblyMissing(), CValidError_bioseq::ValidateCompleteGenome(), CValidError_bioseq::ValidateSecondaryAccConflict(), CValidError_imp::x_DowngradeForMissingAffil(), CAccessionItem::x_GatherInfo(), CLocusItem::x_GetDateForBioseq(), and x_IsWgsSecondary().

GetEnum()

const CNumbering_Base::TEnum & CNumbering_Base::GetEnum

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 136 of file Numbering_.cpp.

References CNumbering_Base::CheckSelected(), CNumbering_Base::e_Enum, and CNumbering_Base::m_object.

GetExt()

const CSeq_inst_Base::TExt & CSeq_inst_Base::GetExt ( void  ) const

inline

Get the Ext member data.

Returns

Reference to the member data.

Definition at line 838 of file Seq_inst_.hpp.

References CSeq_inst_Base::CanGetExt(), CSeq_inst_Base::m_Ext, and CSerialObject::ThrowUnassigned().

Referenced by CConvertGapsBySize::apply(), CExpandGaps::apply(), CConvertSelectedGaps::apply_impl(), CEditSelectedGaps::apply_impl(), CCombineAdjacentGaps::apply_impl(), AssemblyGapsToDelta(), CBlobSplitterImpl::AttachToSkeleton(), BOOST_AUTO_TEST_CASE(), CheckTranslatedBioseq(), CSeq_inst::ConvertDeltaToRaw(), CGapsEditor::ConvertNs2Gaps(), CBlobSplitterImpl::CopySequence(), CBlobSplitterImpl::CopySkeleton(), CSeqMap::CSeqMap(), CSequenceTrack::CSequenceTrack(), DeltaBioseqPack(), ExtractExtraIds(), fta_check_con_for_wgs(), fta_create_wgs_seqid(), CAddLinkageToGaps::GetCommand(), GetDeltaSeqForPosition(), CBlobSplitterImpl::GetLength(), CValidError_bioseq::GetLocFromSeq(), CValidError_graph::GetUngappedSeqLen(), HasAssemblyOrNullGap(), CValidError_bioseq::HasBadWGSGap(), CConvertBadCdsAndRnaToMiscFeat::IsExtendableLeft(), IsExtendableLeft(), CConvertBadCdsAndRnaToMiscFeat::IsExtendableRight(), IsExtendableRight(), CValidError_bioseq::IsSelfReferential(), CValidError_bioseq::ReportBadAssemblyGap(), ReverseComplement(), CAsnCacheTestApplication::Run(), s_GetFlankingGapTypes(), s_HasRawSequence(), s_IntervalsMatchGaps(), s_IsConWithGaps(), CUpdateSeq_Input::s_IsDeltaWithFarPointers(), CUpdateSeq_Input::s_IsDeltaWithNoGaps(), s_ProcessIntraScaffoldTail(), SetLocationSkipGap(), Split_Qscore_SeqGraph_By_DeltaSeq(), CUnorderedSplitter::SplitId(), CUnorderedSplitter::SplitLoc(), CBioseq_Info::sx_ShallowCopy(), CAssemblyGapValidator::Validate(), CValidError_bioseq::ValidateCompleteGenome(), CValidError_bioseq::ValidateDelta(), CValidError_bioseq::ValidateInst(), CValidError_bioseq::ValidateRepr(), CValidError_bioseq::ValidateSegRef(), CValidError_bioseq::ValidateSeqParts(), CFastaOstream::Write(), CBioseq_Info::x_CalcBioseqLength(), CFeatureGenerator::SImplementation::x_CreateProteinBioseq(), CSeqMap::x_DoUpdateSeq_inst(), CAutogeneratedExtendedCleanup::x_ExtendedCleanupBioseq_inst(), CPrimeCacheApplication::x_ExtractDelta(), CSingleFeatValidator::x_FindStartOfGap(), CValidError_bioseq::x_HasGap(), CValidError_bioseq::x_IsDeltaLitOnly(), CValidError_bioseq::x_IsRangeGap(), CValidError_bioseq::x_ParentAndComponentLocationsDiffer(), CUnorderedSplitter::x_SplitDeltaExt(), CValidError_graph::x_ValidateGraphOnDeltaBioseq(), CAgpConverter::x_VerifyComponents(), CForeignContaminationScreenReportReader::xCheckLen(), and CForeignContaminationScreenReportReader::xTrimExt().

GetFig()

const CPubdesc_Base::TFig & CPubdesc_Base::GetFig ( void  ) const

inline

Get the Fig member data.

Returns

Reference to the member data.

Definition at line 682 of file Pubdesc_.hpp.

References CPubdesc_Base::CanGetFig(), CPubdesc_Base::m_Fig, and CSerialObject::ThrowUnassigned().

Referenced by s_CombineRefs(), CReferenceItem::x_GatherRemark(), and CNewCleanup_imp::x_IsPubContentBad().

GetFtable()

const CSeq_annot_Base::C_Data::TFtable & CSeq_annot_Base::C_Data::GetFtable ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 621 of file Seq_annot_.hpp.

Referenced by CImportFeatTable::AddSeqAnnotToSeqEntry(), CDiscrepancyContext::AutofixSeq_annot(), BOOST_AUTO_TEST_CASE(), FeatUtil::ContainsData(), Convert_Seq_annot_Seq_feat(), Convert_Seq_annot_Seq_loc_All(), Convert_Seq_annot_Seq_loc_TotalRange(), CSeq_annot_SplitInfo::CountAnnotObjects(), DemoteCDSToNucSeq(), DoImportFTable(), CScore_Partial::Get(), AnnotObjTrait< CSeq_feat >::GetCont(), CDataTrackUtils::GetFeatSubtypes(), GetInteractionDataFromIbis(), CAnnotationLoader::GetNextAnnot(), CGffRecord::GetSubtypeOf(), CVcfTableView::GetVisibleRanges(), CTableDataFTable::Init(), CFeatTableEdit::InstantiateProductsNames(), CWriteUtil::IsThreeFeatFormat(), CBlobSplitterImpl::MakeID2Chunk(), PromoteCDSToNucProtSet(), CEditsSaver::Remove(), CGeneModelDemoApp::Run(), CTestProtProd_Cdd::RunTest(), s_GetAnnotContent(), s_GetAnnotId(), s_GetClipLoc(), s_ReadMultipleTablesFromString(), CClippedScorer::ScoreAlignments(), CSeq_annot_SplitInfo::SetSeq_annot(), CNewCleanup_imp::ShouldRemoveAnnot(), CCmdPromoteCDS::Unexecute(), CValidError_annot::ValidateSeqAnnot(), CValidError_annot::ValidateSeqAnnotContext(), CUCSCRegionWriter::WriteAnnot(), CSequenceEditingEventHandler::x_CacheSelectedLocations(), CImportFeatTable::x_CheckCollidingIds(), CImportFeatTable::x_CheckConsistentProteinIds(), CImportFeatTable::x_ContainsDuplicateIds(), CImportFeatTable::x_CreateCommand(), CProjectFileWriter::x_GetAnnotId(), CAlignFilter::x_GetRegionMap(), CCreateGeneModelTask::x_Group_By_GeneID(), CSplitDataLoader::x_SplitFeats(), CCreateGeneModelTask::x_StoreGeneratedFeats(), CMultiReaderApp::xProcess5ColFeatTable(), CMultiReaderApp::xProcessRmo(), and CBedGraphWriter::xWriteAnnotFeatureTable().

GetFuzz() [1/2]

const CSeq_inst_Base::TFuzz & CSeq_inst_Base::GetFuzz ( void  ) const

inline

Get the Fuzz member data.

Returns

Reference to the member data.

Definition at line 699 of file Seq_inst_.hpp.

References CSeq_inst_Base::CanGetFuzz(), CSeq_inst_Base::m_Fuzz, and CSerialObject::ThrowUnassigned().

Referenced by CBlobSplitterImpl::CopySequence(), and CBioseq_Info::sx_ShallowCopy().

GetFuzz() [2/2]

const CSeq_literal_Base::TFuzz & CSeq_literal_Base::GetFuzz ( void  ) const

inline

Get the Fuzz member data.

Returns

Reference to the member data.

Definition at line 301 of file Seq_literal_.hpp.

References CSeq_literal_Base::CanGetFuzz(), CSeq_literal_Base::m_Fuzz, and CSerialObject::ThrowUnassigned().

Referenced by CConvertGapsBySize::apply(), CCombineAdjacentGaps::apply_impl(), CBlobSplitterImpl::CopySequence(), GetDeltaSeqSummary(), CValidError_bioseq::ValidateDelta(), CSeqMap::x_Add(), and CContigItem::x_GatherInfo().

GetGap()

const CSeq_data_Base::TGap & CSeq_data_Base::GetGap

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 184 of file Seq_data_.cpp.

References CSeq_data_Base::CheckSelected(), CSeq_data_Base::e_Gap, and CSeq_data_Base::m_object.

Referenced by CSeq_literal::GetBridgeability(), GetLinkage(), s_GetFlankingGapTypes(), s_NewGapItem(), s_SubtractTail(), CValidError_bioseq::ValidateDelta(), WriteLinkageEvidence(), CBioseqIndex::x_InitGaps(), and CGapsEditor::x_SetGapParameters().

GetGbmoltype()

const CMolInfo_Base::TGbmoltype & CMolInfo_Base::GetGbmoltype ( void  ) const

inline

Get the Gbmoltype member data.

Returns

Reference to the member data.

Definition at line 631 of file MolInfo_.hpp.

References CMolInfo_Base::CanGetGbmoltype(), CMolInfo_Base::m_Gbmoltype, and CSerialObject::ThrowUnassigned().

GetGenbank()

const CSeqdesc_Base::TGenbank & CSeqdesc_Base::GetGenbank

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 334 of file Seqdesc_.cpp.

References CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::e_Genbank, and CSeqdesc_Base::m_object.

Referenced by BOOST_AUTO_TEST_CASE(), CEditHistory::GetCommand(), CAutoDef::GetKeywordPrefix(), CGenbankKeywordField::GetVals(), CGBBlockField::GetVals(), CGenbankKeywordField::IsEmpty(), CGBBlockField::IsEmpty(), CValidError_bioseq::IsHistAssemblyMissing(), CSGSequenceDS::IsRefSeqGene(), variation::IsRefSeqGene(), CFindASN1Dlg::ReplaceInDesc(), s_DetermineComponentType(), CMacroFunction_RemoveQual::s_RemoveFields(), CGBBlockField::SetVal(), CGenbankKeywordField::SetVal(), CAddSecondary::TransferDataToWindow(), CValidError_bioseq::ValidateMolInfoContext(), CValidError_bioseq::ValidateSecondaryAccConflict(), CValidError_bioseq::ValidateSeqDescContext(), CAccessionItem::x_GatherInfo(), COriginItem::x_GatherInfo(), CSourceItem::x_GatherInfo(), CLocusItem::x_GetDateForBioseq(), CValidError_bioseq::x_IsActiveFin(), x_IsWgsSecondary(), and CFlatGatherer::x_UnorderedComments().

GetGeneral()

const CAnnot_id_Base::TGeneral & CAnnot_id_Base::GetGeneral

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 134 of file Annot_id_.cpp.

References CAnnot_id_Base::CheckSelected(), CAnnot_id_Base::e_General, and CAnnot_id_Base::m_object.

Referenced by s_GetAnnotId().

GetGraph()

const CSeq_annot_Base::C_Data::TGraph & CSeq_annot_Base::C_Data::GetGraph ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 661 of file Seq_annot_.hpp.

Referenced by Convert_Seq_annot_Seq_graph(), Convert_Seq_annot_Seq_loc_TotalRange(), CSeq_annot_SplitInfo::CountAnnotObjects(), AnnotObjTrait< CSeq_graph >::GetCont(), CCSRARefSeqInfo::LoadAnnotMainChunk(), CEditsSaver::Remove(), s_GetAnnotContent(), CSeq_annot_SplitInfo::SetSeq_annot(), CValidError_annot::ValidateSeqAnnot(), CValidError_annot::ValidateSeqAnnotContext(), CID2SNPProcessor_Impl::x_LoadBlob(), CBamRefSeqInfo::x_LoadRangesCov(), CWiggleExportJob::x_RecalculateGraph(), CSplitDataLoader::x_SplitGraphs(), CBedGraphWriter::xWriteAnnotGraphs(), and CWiggleWriter::xWriteAnnotGraphs().

GetHas_zero()

CNum_cont_Base::THas_zero CNum_cont_Base::GetHas_zero ( void  ) const

inline

Get the Has_zero member data.

Returns

Copy of the member data.

Definition at line 322 of file Num_cont_.hpp.

References CNum_cont_Base::m_Has_zero.

GetHet()

const CSeqdesc_Base::THet & CSeqdesc_Base::GetHet ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 1176 of file Seqdesc_.hpp.

References CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::e_Het, and CSeqdesc_Base::m_Het.

Referenced by CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), and s_GetContentLabel().

GetHist()

const CSeq_inst_Base::THist & CSeq_inst_Base::GetHist ( void  ) const

inline

Get the Hist member data.

Returns

Reference to the member data.

Definition at line 859 of file Seq_inst_.hpp.

References CSeq_inst_Base::CanGetHist(), CSeq_inst_Base::m_Hist, and CSerialObject::ThrowUnassigned().

Referenced by CLoadSecondaryAccessions::apply(), BOOST_AUTO_TEST_CASE(), CValidError_bioseq::CheckTpaHistory(), CFeatureGenerator::SImplementation::ConvertMixedAlignToAnnot(), CBlobSplitterImpl::CopySequence(), CAddSecondary::GetCommand(), CRemoveSeqHistAssembly::GetCommand(), CBioseq::GetNonLocalId(), CValidError_bioseq::IsHistAssemblyMissing(), RestoreModelFromInternalGnomonFeature(), RestoreModelFromPublicMrnaFeature(), CBioseq_Info::sx_ShallowCopy(), CSplitCacheApp::TestSplitBlob(), CValidError_bioseq::ValidateHistory(), CSGSwitchPointJob::x_Execute(), and x_FindLatestSequence().

GetId() [1/2]

const CBioseq_Base::TId & CBioseq_Base::GetId ( void  ) const

inline

Get the Id member data.

Returns

Reference to the member data.

Definition at line 290 of file Bioseq_.hpp.

References CBioseq_Base::m_Id.

Referenced by CMultiReader::AddAnnots(), AddFeat(), AddLocalIdUserObjects(), CGBProjectHelper::AddProjectItemsFromRID(), AddProtFeat(), CBuildDatabase::AddSequences(), AdjustSingleFeature(), AllowOrphanedProtein(), CForeignContaminationScreenReportReader::AnnotateOrRemove(), CTrimN::apply(), CSourceModParser::ApplyAllMods(), CAttachedHandles::Attach(), CDUpdater::BioseqHasSeqId(), BOOST_AUTO_TEST_CASE(), BuildGoodByteGraph(), CDiscrepancyContext::BuildSeqSummary(), CBlobSplitterImpl::CanSplitBioseq(), CAutoDefFakePromoterClause::CAutoDefFakePromoterClause(), CAutoDefPromoterAnd5UTRClause::CAutoDefPromoterAnd5UTRClause(), CBioseq_SplitInfo::CBioseq_SplitInfo(), ChangeSeqId(), Check3Policy(), COligoSpecificityTemplate::COligoSpecificityTemplate(), CRemoveSequencesDlg::CollectLabels(), CRBSubpanel::CollectLabels(), CRemoveSequencesDlg::CollectLabelsAll(), CRBSubpanel::CollectLabelsAll(), Convert_Bioseq_Seq_id(), CopyGiSeqId(), CopyPdbSeqId(), CopySeqIdsOfType(), CBlobSplitterImpl::CopySkeleton(), CreateFeatLocation(), CSeqIdGuesser::CSeqIdGuesser(), CSeqFormatter::DumpAll(), CBlastDBExtractor::ExtractAccession(), ExtractBioseq(), extractBioseqInfo(), CBlastDBExtractor::ExtractFasta(), CBlastDBExtractor::ExtractSeqId(), CSimpleB2SWrapper::FillOutSeqLoc(), FindGene(), sequpd::FindMatches(), sequpd::FixCollidingIDs_Bioseq(), CHTMLFormatterEx::FormatLocation(), CFlatFileGenerator::Generate(), GetAccAndVersion(), CAlignFormatUtil::GetAlignedRegionsURL(), CDUpdater::GetAllIdsFromSeqEntry(), GetBestId(), GetBioseqIdLabel(), CBioseqContext::GetBioseqIds(), CAlignFormatUtil::GetDbType(), GetEmblInstContig(), CBioseq::GetFirstId(), CLabelRna::GetGenBankId(), GetGenBankInstContig(), CDUpdater::getGi(), GetGIForSeqId(), GetGoodSeqEntryWithFeatureIds(), GetId(), CFastaReader::GetIDs(), CSeqIdGuesser::GetIdStrings(), CBioseq::GetLabel(), CLocationListCtrl::GetListIdStrForSeqId(), CBioseq::GetLocalId(), CWGSDb_Impl::GetMasterDescrEntry(), CWGSDb_Impl::GetMasterGi(), CMemorySrcFileMap::GetMods(), CBioseq::GetNonLocalId(), GetProteinId(), GetRnaRef(), CAsnCacheStore::GetSeqIds(), GetSeqsStatus(), CSeq_id::GetStringDescr(), GetTitle(), CSeqIdField::GetVal(), HasRepairedIDs(), HasSeqIdOfType(), CValidError_bioseq::IsEmblOrDdbj(), CValidError_bioseq::IsGenbank(), CValidError_bioseq::IsMaster(), CDiscrepancyContext::IsRefseq(), CValidError_bioseq::IsRefSeq(), CValidError_bioseq::IsTSAAccession(), CValidError_bioseq::IsWGSAccession(), CId1FetchApp::LookUpGI(), MakeEntryForDeltaConversion(), CBlobSplitterImpl::MakeID2Chunk(), MakeMultiSeqCDS(), CCleanup::MoveFeatToProtein(), CFeatureTableReader::MoveRegionsToProteins(), CFileSubpanel::OnSelectButton(), CApplyMods::operator()(), operator<<(), CNewCleanup_imp::ProtSeqBC(), CDUpdater::reformatBioseq(), ReplaceWellknownSeqs(), CDemoApp::Run(), s_AddCDS(), s_CheckDataStatus(), s_CollectCollidingIDs_Entry(), s_CollectSeqIds(), s_DoesBioseqRecurse(), s_FixCollidingIDs_Annot(), s_GatherIdLabels(), s_GenerateBlastDefline(), s_GetDisplayLabel(), s_GetIdLabel(), s_GetMatchingSequence(), s_HasGenBankId(), s_HasUnprocessedCdregions(), s_MatchProteinById(), s_ReportUndefinedSpeciesId(), s_SetCloneInfo(), s_WriteGnlAndAcc(), SeqIdHasMatchInBioseq(), CFileSubpanel::SetClusters(), CNewCleanup_imp::SetGlobalFlags(), SetLocationSkipGap(), CCleanup::ShouldStripPubSerial(), SPFeatProtRef(), CBlobSplitterImpl::SplitBioseq(), sReportMissingMods(), sReportMultipleMatches(), CBioseq_Info::sx_ShallowCopy(), TestCds(), TestCdsFromLastBioseq(), TestCdsFromLastBioseqOutsideAlign(), TestCdsFromLastBioseqWithCodeBreak(), TestCdsWithCodeBreak(), TestCircularTopology(), TestDoNotExtendOverGap(), TestDoNotFuseAbuttingIntervals(), TestExtendOverGap(), TestFuseAbuttingIntervals(), TestOneGapSeq(), TestOrderedLoc(), TestPartialWhenCutLastInterval(), TestPartialWhenCutLastIntervalDoNotExtend(), TestPartialWhenCutStart(), TestPartialWhenCutStartDoNotExtend(), TestPartialWhenCutStop(), TestPartialWhenCutStopDoNotExtend(), TestPointLocInside(), TestPointLocOutside(), TestTrnaAnticodon(), TestTrnaAnticodonFromLastBioseq(), TestTwoIntCdsFromLastBioseqOutsideAlign(), TestTwoIntCdsOnMinusStrand(), CMacroFunction_TrimTerminalNs::TheFunction(), UpdateToBestId(), CValidError_bioseq::ValidateCompleteGenome(), CValidError_annot::ValidateSeqAnnotContext(), CValidError_bioseq::ValidateSeqDescContext(), CValidError_bioseq::ValidateSeqIds(), CBlastDB_FastaFormatter::Write(), CSeq_id::WriteAsFasta(), CId1FetchApp::WriteQualityScores(), CFeatureTableReader::x_AddProteinFeatureToProtein(), CAsn2FlatApp::x_AddSNPAnnots(), CWriteDB_Impl::x_BuildDeflinesFromBioseq(), CDumpASNIndex::x_BuildIndexAndSeqIdInfo(), CSequenceEditingEventHandler::x_CacheSelectedLocations(), CSingleFeatValidator::x_CalculateLocationGaps(), CValidError_bioseq::x_CheckGeneralIDs(), CNewCleanup_imp::x_CleanupGenbankBlock(), CWriteDB_Impl::x_CookSequence(), CDisplaySeqalign::x_DisplayBl2SeqLink(), CAdjustFeaturesForGaps::x_DoOne(), CNewCleanup_imp::x_ExtendSingleGeneOnMrna(), CRemoteBlast::x_ExtractQueryIds(), CShowBlastDefline::x_FillDeflineAndId(), CUpdateSeq_Input::x_FixCollidingIDs_Bioseq(), CApplyRNAITSDlg::x_GetAlignments(), CAlnGraphic::x_GetAlnInfo(), CFastaOstream::x_GetBestId(), CAutoDef::x_GetFeatureClauses(), CApplyRNAITSDlg::x_GetRow(), CCorrectRNAStrandDlg::x_GetStatusSMART(), CFeatModApply::x_GetWholeSeqLoc(), CEditObjectSeq_feat::x_HandleCdsProduct(), CDisplaySeqalign::x_HTMLSeqIDLink(), CTopLevelSeqEntryContext::x_InitSeqs(), x_IsEmblOrDdbjOnSet(), CSingleFeatValidator::x_IsMostlyNs(), CLDS2_Manager::x_ParseFile(), CDisplaySeqalign::x_PrepareDynamicFeatureInfo(), CDisplaySeqalign::x_PrintDefLine(), CCorrectRNAStrandDlg::x_ProcessRNAStrandLine(), CUpdateSeq_Input::x_ReadAccession(), CSplignApp::x_ReadFastaSetId(), CNgAlignApp::x_RecurseSeqEntry(), CNewCleanup_imp::x_RemoveSingleStrand(), CGFFReader::x_ResolveID(), CApplyRNAITSDlg::x_SeqIdsAlignedWith(), CFeatureItem::x_SeqIdWriteForTable(), CBlastDBExtractor::x_SetGi(), CBioseqContext::x_SetId(), CBioseq_Info::x_SetObject(), CValidError_bioseq::x_TranscriptIDsMatch(), CRemoveSeqId::x_UpdateBioseq(), CProtValidator::x_ValidateProteinName(), CSingleFeatValidator::x_ValidateSeqFeatProduct(), CApplyRNAITSDlg::x_WasPropagatedTo(), CFastaOstream::x_WriteSeqIds(), CFeatureTableReader::xAddProteinToSeqEntry(), CFeatTableEdit::xGenerate_mRNA_Product(), seqsubmit_split::SIdCompare::xGetGeneralId(), XMLGetInstContig(), and CFeatureTableReader::xTranslateProtein().

GetId() [2/2]

const CSeq_annot_Base::TId & CSeq_annot_Base::GetId ( void  ) const

inline

Get the Id member data.

Returns

Reference to the member data.

Definition at line 733 of file Seq_annot_.hpp.

References CSeq_annot_Base::m_Id.

Referenced by CSeq_annot_SplitInfo::GetName(), CBlobSplitterImpl::MakeSeq_annot(), s_GetAnnotId(), CSeq_annot_Handle::Seq_annot_GetId(), CAnnotGetter::x_GetCompleteSeqAnnot(), and CSeq_annot_Info::x_UpdateName().

GetIds() [1/3]

const CAlign_def_Base::TIds & CAlign_def_Base::GetIds ( void  ) const

inline

Get the Ids member data.

Returns

Reference to the member data.

Definition at line 267 of file Align_def_.hpp.

References CAlign_def_Base::m_Ids.

Referenced by CAdvancedAlignCleanup::x_CleanupProsplignCompartment(), and CProSplignJob::x_ProcessCompartment().

GetIds() [2/3]

const CSeq_annot_Base::C_Data::TIds & CSeq_annot_Base::C_Data::GetIds ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 681 of file Seq_annot_.hpp.

Referenced by Convert_Seq_annot_Seq_id(), Convert_Seq_annot_Seq_loc_All(), s_GetAnnotContent(), and CSeq_annot_Info::x_InitAnnotList().

GetIds() [3/3]

const CSeq_hist_rec_Base::TIds & CSeq_hist_rec_Base::GetIds ( void  ) const

inline

Get the Ids member data.

Returns

Reference to the member data.

Definition at line 230 of file Seq_hist_rec_.hpp.

References CSeq_hist_rec_Base::m_Ids.

Referenced by CLoadSecondaryAccessions::apply(), CEditHistory::CreateControls(), CAddSecondary::GetCommand(), s_CheckDataStatus(), s_CreateHistCommentString(), CValidError_bioseq::ValidateHistory(), and x_FindLatestSequence().

GetInst()

const CBioseq_Base::TInst & CBioseq_Base::GetInst ( void  ) const

inline

Get the Inst member data.

Returns

Reference to the member data.

Definition at line 336 of file Bioseq_.hpp.

References CBioseq_Base::m_Inst, and CBioseq_Base::ResetInst().

Referenced by CGapsEditor::AddBioseqAsLiteral(), CCleanup::AddMissingMolInfo(), CCleanup::AddPartialToProteinTitle(), AddProtFeat(), CWriteDB_Impl::AddSequence(), CAlignmentAssistant::AdjustBioseq(), CFeatGapInfo::AdjustProteinSeq(), CForeignContaminationScreenReportReader::AnnotateOrRemove(), AppendBioseqLabel(), CLoadSecondaryAccessions::apply(), CSourceModParser::ApplyAllMods(), CClearKeywords::ApplyToCSeq_entry(), CMolInfoEditDlg::ApplyToInst(), CMolInfoEditDlg::ApplyToMolInfo(), AssemblyGapsToDelta(), BOOST_AUTO_TEST_CASE(), BuildBigGoodNucProtSet(), BuildGoodByteGraph(), CDiscrepancyContext::BuildSeqSummary(), CAlnVec::CalculateScore(), CBlobSplitterImpl::CanSplitBioseq(), CFeatureTableReader::ChangeDeltaProteinToRawProtein(), CSequenceEditingEventHandler::ChangeToGenomicDna(), Check3Policy(), CheckAdjustStart(), CheckAdjustStop(), CFastaReader::CheckDataLine(), CValidError_bioseq::CheckTpaHistory(), CheckTranslatedBioseq(), CkNonTerSP(), seqsubmit_split::SLongestFirstCompare::compare_seq(), seqsubmit_split::SShortestFirstCompare::compare_seq(), CGapsEditor::ConvertBioseqToDelta(), CFeatureGenerator::SImplementation::ConvertMixedAlignToAnnot(), CGapsEditor::ConvertNs2Gaps(), ConvertRawToDeltaByNsCommand_impl(), ConvertRawToDeltaByNsHugeFileCmd_impl(), CBlobSplitterImpl::CopySkeleton(), CNewCleanup_imp::CreateMissingMolInfo(), CreateMolInfoDesc(), CMolInfoEditDlg::CreateNewMolInfo(), CSeqMap::CreateSeqMapForBioseq(), CreateTruncatedSequence(), CSeqVector::CSeqVector(), DeltaBioseqPack(), EmblAscii(), FindGene(), sequpd::FindMatches(), CReadBlastApp::fit_blast(), fta_check_con_for_wgs(), fta_create_wgs_seqid(), fta_set_molinfo_completeness(), CValidError_bioseq::GapByGapInst(), GapsToDelta(), GenBankAsciiOrig(), CAlnVecMultiDataSource::GetAlignType(), CSGAlignmentJob::GetAlignType(), CDataTrackUtils::GetAlignType(), CAddSecondary::GetCommand(), CEditSequenceEnds::GetCommand(), CEditSeqEndsWithAlign::GetCommand(), CRemoveSeqHistAssembly::GetCommand(), CModifySeqId::GetCommand(), CCreateSeqHistForTpa::GetCreateSeqHistFromTpaCommand(), CEditObjectSeq_desc::GetEditCommand(), CBioseq_set::GetGenomicFromGenProdSet(), GetGoodSeqEntryWithFeatureIds(), CBioseq_set::GetLabel(), CBioseq::GetLabel(), CBioseq::GetLength(), CValidError_bioseq::GetLocFromSeq(), GetNcbieaaString(), GetNcbistdSeq(), CBioseq::GetNonLocalId(), CReadBlastApp::getQueryLen(), CPssm::GetQueryLength(), CPssm::GetQuerySequenceData(), GetRawSequenceString(), GetResidueAtPosition(), GetRetranslateCDSCommand(), GetSeqLength(), CMolinfo_field::GetSequenceQualFromBioseq(), CSeq_id::GetStringDescr(), GetTitle(), CValidError_bioseq::GetTSAConflictingBiomolTechErrors(), CValidError_graph::GetUngappedSeqLen(), HasAssemblyOrNullGap(), CValidError_bioseq::HasBadWGSGap(), CDeflineProcess::IndexedProcess(), InsertStop(), CReadBlastApp::is_prot_entry(), CBioseq::IsAa(), CBlastBioseqMaker::IsEmptyBioseq(), CConvertBadCdsAndRnaToMiscFeat::IsExtendableLeft(), IsExtendableLeft(), CConvertBadCdsAndRnaToMiscFeat::IsExtendableRight(), IsExtendableRight(), CValidError_bioseq::IsHistAssemblyMissing(), CValidError_bioseq::IsMaster(), CBioseq::IsNa(), CValidError_bioseq::IsSelfReferential(), CBioseq::IsSetLength(), CFastaObjectLoader::LoadFromStream(), MakeMultiSeqCDS(), MakeSeqLong(), CEditSequence::OnAccept(), CMolInfoSubpanel::OnSelectButton(), CBlastFormat::PrintReport(), PrintTabular(), PrintTabularUnaligned(), CNewCleanup_imp::ProtSeqBC(), CSeqAnnotFromFasta::PurgeNonAlphaFromSequence(), RawBioseqPack(), CFastaReaderEx::ReadDeltaFasta(), RemoteFetchLongNucleotideBioseq(), CNewCleanup_imp::RemoveBadProteinTitle(), CValidError_bioseq::ReportBadAssemblyGap(), RestoreModelFromInternalGnomonFeature(), RestoreModelFromPublicMrnaFeature(), CNewCleanup_imp::ResynchPeptidePartials(), RetranslateCDS(), RetranslateCdsForNucProtSet(), RetrievePartsOfLargeChromosome(), RevComp(), CSeqDBDemo_SeqidToBioseq::Run(), CWinMaskDemoApplication::Run(), s_AddSeqDataToPssm(), s_DoesBioseqRecurse(), s_GetQuerySequence(), s_GetQuerySequenceData(), s_HasRawSequence(), s_IncrementSeqCount(), s_is_na(), s_IsConWithGaps(), CUpdateSeq_Input::s_IsDeltaWithFarPointers(), CUpdateSeq_Input::s_IsDeltaWithNoGaps(), s_IsWgs_Contig(), s_ReplaceAllMolinfo(), s_WillReportTerminalGap(), PssmScorer::score(), CFlatfileProcess::SeqEntryProcess(), CGeneOverlapProcess::SeqEntryProcess(), CGeneFeatTreeProcess::SeqEntryProcess(), SeqToDelta(), SeqToDeltaSP(), CMolInfoSubpanel::SetClusters(), SetLocationSkipGap(), SetNewProteinSequence(), SetSequenceEnd(), SetSequenceStart(), CReadBlastApp::short_proteins(), CReadBlastApp::skip_toprot(), Split_Qscore_SeqGraph_By_DeltaSeq(), SrchSegSeqMol(), CBioseq_Info::sx_ShallowCopy(), CSplitCacheApp::TestSplitBlob(), CdBlaster::truncateBioseq(), TruncateTransSplicedCDSForExtension(), CDeflineProcess::UnindexedProcess(), CAssemblyGapValidator::Validate(), CValidError_bioseq::ValidateCompleteGenome(), CValidError_bioseq::ValidateDelta(), CValidError_bioseq::ValidateDeltaLoc(), CValidError_graph::ValidateGraphsOnBioseq(), CValidError_bioseq::ValidateHistory(), CValidError_bioseq::ValidateInst(), CValidError_bioseq::ValidateMolInfoContext(), CValidError_bioseq::ValidateNsAndGaps(), CValidError_bioseq::ValidateRawConst(), CValidError_bioseq::ValidateSegRef(), CValidError_annot::ValidateSeqAnnotContext(), CValidError_bioseq::ValidateSeqFeatContext(), CValidError_bioseq::ValidateSeqIds(), CValidError_bioseq::ValidateSeqLen(), CValidError_bioseq::ValidateSeqParts(), CFastaOstream::Write(), CVdbFastaExtractor::Write(), CSeq_id::WriteAsFasta(), CAlignFormatUtil::x_AcknowledgeBlastSequence(), CWriteDB_Impl::x_ComputeSeqLength(), CWriteDB_Impl::x_CookSequence(), CSGSwitchPointJob::x_Execute(), CNewCleanup_imp::x_ExtendProteinFeatureOnProteinSeq(), CNewCleanup_imp::x_ExtendSingleGeneOnMrna(), CBlastFastaInputSource::x_FastaToSeqLoc(), CFastaOstream::x_GetBestId(), CSraInputSource::x_GetNextSeq_loc(), CEditObjectSeq_feat::x_HandleCdsProduct(), CValidError_bioseq::x_HasGap(), CSequenceDataTester::x_Init(), CAgpConverter::x_InitializeCopyOfTemplate(), CFastaReader::x_NucOrProt(), CASN1InputSourceOMF::x_ReadOneSeq(), CNewCleanup_imp::x_RemoveSingleStrand(), CVectorTrimPanel::x_RetranslateCDS(), CValidError_bioseq::x_ShowBioProjectWarning(), CUnorderedSplitter::x_SplitDeltaExt(), CSplitDataLoader::x_SplitSeqData(), CPrimeCacheApplication::x_StripSeqEntry(), CValidError_bioseq::x_ValidateCompletness(), CValidError_graph::x_ValidateGraphOnDeltaBioseq(), CAgpConverter::x_VerifyComponents(), CForeignContaminationScreenReportReader::xCheckLen(), CFeatureTableReader::xConvertSeqIntoSeqSet(), CFeatTableEdit::xGenerate_mRNA_Product(), XMLAscii(), and CFeatureTableReader::xTranslateProtein().

GetIupacaa()

const CSeq_data_Base::TIupacaa & CSeq_data_Base::GetIupacaa ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 530 of file Seq_data_.hpp.

References CSeq_data_Base::CheckSelected(), CSeq_data_Base::e_Iupacaa, and CSeq_data_Base::m_Iupacaa.

Referenced by CSeqportUtil_implementation::AppendIupacaa(), CBlastFormattingMatrix::CBlastFormattingMatrix(), CheckTranslatedBioseq(), CSeq_inst::ConvertDeltaToRaw(), CSeqportUtil_implementation::FastValidateIupacaa(), CValidError_bioseq::GetDataLen(), NSNPVariationHelper::GetDeltas(), CSeqportUtil_implementation::GetIupacaaCopy(), CBlobSplitterImpl::GetLength(), GetNcbieaaString(), GetNcbistdSeq(), GetRawSequenceString(), GetSeqLength(), CGuiObjectInfoVariant::GetToolTip(), NSnpGui::GetVcfType(), CSeqportUtil_implementation::Pack(), PackSeqData(), SeqToDeltaSP(), SetNewProteinSequence(), CSeqportUtil_implementation::ValidateIupacaa(), CCleanup::WGSCleanup(), variation::CVariationUtil::x_InferNAfromAA(), variation_ref::CVariationUtil::x_ProtToPrecursor(), CVectorTrimPanel::x_RetranslateCDS(), and variation_ref::CHgvsParser::x_SeqLiteralToStr().

GetIupacna()

const CSeq_data_Base::TIupacna & CSeq_data_Base::GetIupacna ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 510 of file Seq_data_.hpp.

References CSeq_data_Base::CheckSelected(), CSeq_data_Base::e_Iupacna, and CSeq_data_Base::m_Iupacna.

Referenced by AddLiteral(), CSeqportUtil_implementation::AppendIupacna(), BOOST_AUTO_TEST_CASE(), variation::ContainsIupacNaAmbiguities(), CSeq_inst::ConvertDeltaToRaw(), ConvertRawToDeltaByNs(), CountNs(), CountNucleotides(), CSeqportUtil_implementation::FastValidateIupacna(), GapsToDelta(), CSeqportUtil_implementation::GetAmbigs_iupacna_ncbi2na(), CValidError_bioseq::GetDataLen(), NSNPVariationHelper::GetDeltas(), CSeqportUtil_implementation::GetIupacnaCopy(), CBlobSplitterImpl::GetLength(), CGuiObjectInfoVariant::GetToolTip(), NSnpGui::GetVcfType(), InsertStop(), CVariationUtilities::IsReferenceCorrect(), CSeqportUtil_implementation::MapIupacnaToNcbi2na(), RevComp(), CWinMaskDemoApplication::Run(), CNmer_repeatsApplication::Run(), s_GetAltRefFromInst(), s_GetQuerySequence(), SeqToDelta(), SetSequenceEnd(), SetSequenceStart(), variation::CVariationUtil::TranslateNAtoAA(), CSeqportUtil_implementation::ValidateIupacna(), CVdbFastaExtractor::Write(), CFeatureItem::x_AddQualsVariation(), CFeatureGenerator::SImplementation::x_CollectMrnaSequence(), variation_ref::CHgvsParser::x_SeqLiteralToStr(), variation::CHgvsParser::x_SeqLiteralToStr(), CVariationNormalization_base< T >::x_Shift(), and CForeignContaminationScreenReportReader::xTrimData().

GetLength() [1/2]

CSeq_inst_Base::TLength CSeq_inst_Base::GetLength ( void  ) const

inline

Get the Length member data.

Returns

Copy of the member data.

Definition at line 659 of file Seq_inst_.hpp.

References CSeq_inst_Base::CanGetLength(), CSeq_inst_Base::m_Length, and CSerialObject::ThrowUnassigned().

Referenced by CGapsEditor::AddBioseqAsLiteral(), AddProtFeat(), CFeatGapInfo::AdjustProteinSeq(), AppendBioseqLabel(), CConvertSelectedGaps::apply_impl(), CEditSelectedGaps::apply_impl(), CCombineAdjacentGaps::apply_impl(), CFastaReader::AssembleSeq(), BOOST_AUTO_TEST_CASE(), BuildGoodByteGraph(), CDiscrepancyContext::BuildSeqSummary(), Check3Policy(), CheckAdjustStart(), CheckAdjustStop(), CValidError_bioseq::CheckSourceDescriptor(), seqsubmit_split::SLongestFirstCompare::compare_seq(), seqsubmit_split::SShortestFirstCompare::compare_seq(), CGapsEditor::ConvertBioseqToDelta(), CSeq_inst::ConvertDeltaToRaw(), CGapsEditor::ConvertNs2Gaps(), ConvertRawToDeltaByNs(), CVDBBlastUtil::CreateBioseqFromOid(), CVDBBlastUtil::CreateBioseqFromVDBSeqId(), CreateTruncatedSequence(), CSeqMap::CSeqMap(), CLocationEditPolicy::Extend5(), CDesktopBioseqItem::GetDescription(), GetGoodSeqEntryWithFeatureIds(), CBioseq_set::GetLabel(), CBlobSplitterImpl::GetLength(), CBioseq::GetLength(), CReadBlastApp::getQueryLen(), CPssm::GetQueryLength(), GetRetranslateCDSCommand(), GetSeqLength(), CValidError_graph::GetUngappedSeqLen(), CFastaObjectLoader::LoadFromStream(), MakeMultiSeqCDS(), NormalizeUnknownLengthGaps(), CBioseq::PackAsDeltaSeq(), PatchTargetSequence(), CBlastFormat::PrintReport(), PrintTabular(), PrintTabularUnaligned(), RemoteFetchLongNucleotideBioseq(), ReverseComplement(), CSeqDBDemo_SeqidToBioseq::Run(), CWinMaskDemoApplication::Run(), s_BasicValidation(), s_GetTrimCoordinates(), s_PercentBioseqMatch(), s_WillReportTerminalGap(), PssmScorer::score(), SetNewProteinSequence(), CReadBlastApp::short_proteins(), CBioseq_Info::sx_ShallowCopy(), TrimSeqData(), TrimSequenceAndAnnotation(), TrimStopsFromCompleteCDS(), CdBlaster::truncateBioseq(), TruncateTransSplicedCDSForExtension(), CValidError_bioseq::ValidateDelta(), CValidError_graph::ValidateGraphsOnBioseq(), CValidError_bioseq::ValidateNsAndGaps(), CValidError_bioseq::ValidateRawConst(), CValidError_bioseq::ValidateSegRef(), CValidError_bioseq::ValidateSeqFeatContext(), CValidError_bioseq::ValidateSeqLen(), WriteDB_Ncbi4naToBinary(), CAlignFormatUtil::x_AcknowledgeBlastSequence(), CWriteDB_Impl::x_ComputeSeqLength(), CFeatureGenerator::SImplementation::x_CreateProteinBioseq(), CBlastFastaInputSource::x_FastaToSeqLoc(), CSraInputSource::x_GetNextSeq_loc(), CVectorTrimPanel::x_GetTrimCoordinates(), CASN1InputSourceOMF::x_ReadOneSeq(), CVectorTrimPanel::x_RetranslateCDS(), CWGSSeqIterator::x_SetDelta(), CVectorTrimPanel::x_SetSeqData(), CSplitDataLoader::x_SplitSeqData(), CSequenceDataTester::x_TestSingleSequence_Remote(), CGff3Writer::xAssignFeature(), CGff3Writer::xAssignFeatureEndpoints(), CFeatTableEdit::xGenerate_mRNA_Product(), and CFeatureTableReader::xTranslateProtein().

GetLength() [2/2]

CSeq_literal_Base::TLength CSeq_literal_Base::GetLength ( void  ) const

inline

Get the Length member data.

Returns

Copy of the member data.

Definition at line 261 of file Seq_literal_.hpp.

References CSeq_literal_Base::CanGetLength(), CSeq_literal_Base::m_Length, and CSerialObject::ThrowUnassigned().

Referenced by AddLiteral(), CConvertGapsBySize::apply(), CExpandGaps::apply(), CConvertSelectedGaps::apply_impl(), CEditSelectedGaps::apply_impl(), CCombineAdjacentGaps::apply_impl(), variation::CVariationUtil::AttachSeq(), CSeq_inst::ConvertDeltaToRaw(), CGapsEditor::ConvertNs2Gaps(), variation::CVariationUtil::FlipStrand(), CAddLinkageToGaps::GetCommand(), GetDeltaSeqSummary(), CBlobSplitterImpl::GetLength(), CGuiObjectInfoVariant::GetToolTip(), variation::CVariationUtil::Remap(), ReverseComplement(), s_CheckSeg(), s_FixBioseqDeltas(), s_GetDeltaLen(), s_GetUngapLoc(), s_IntervalsMatchGaps(), s_IsConWithGaps(), CUpdateSeq_Input::s_IsDeltaWithNoGaps(), s_NsAreGaps(), variation_ref::CVariationUtil::s_ResolveIntronicOffsets(), variation::CVariationUtil::s_SpliceLiterals(), s_SubtractTail(), variation::CVariationUtil::TranslateNAtoAA(), CValidError_bioseq::ValidateDelta(), CSeqMap::x_Add(), CFeatureItem::x_AddQualsVariation(), CBioseq_Info::x_CalcBioseqLength(), CValidError_bioseq::x_CountAdjacentNs(), CContigItem::x_GatherInfo(), variation_ref::CHgvsParser::x_GetInstLength(), variation::CHgvsParser::x_GetInstLength(), CValidError_graph::x_GetLitLength(), CGencollIdMapper::x_IsLoc_Int_InAGap(), variation::CHgvsParser::x_no_change(), variation_ref::CHgvsParser::x_nuc_subst(), variation::CHgvsParser::x_nuc_subst(), variation::CHgvsParser::x_prot_missense(), variation_ref::CHgvsParser::x_prot_pos(), variation::CHgvsParser::x_prot_pos(), CGapsEditor::x_SetGapParameters(), variation_ref::CVariationUtil::x_SetVariantProperties(), CUnorderedSplitter::x_SplitDeltaExt(), CValidError_graph::x_ValidateGraphOnDeltaBioseq(), CForeignContaminationScreenReportReader::xTrimExt(), and CForeignContaminationScreenReportReader::xTrimLiteral().

GetLinkage()

CSeq_gap_Base::TLinkage CSeq_gap_Base::GetLinkage ( void  ) const

inline

Get the Linkage member data.

Returns

Copy of the member data.

Definition at line 329 of file Seq_gap_.hpp.

References CSeq_gap_Base::CanGetLinkage(), CSeq_gap_Base::m_Linkage, and CSerialObject::ThrowUnassigned().

Referenced by CSeq_gap::AddLinkageEvidence(), BOOST_AUTO_TEST_CASE(), CSeq_gap::ChangeType(), CSeq_literal::GetBridgeability(), CFastaOstream::GetGapModText(), GetLinkage(), CValidError_bioseq::ValidateDelta(), and CValidError_bioseq::ValidateSeqGap().

GetLinkage_evidence()

const CSeq_gap_Base::TLinkage_evidence & CSeq_gap_Base::GetLinkage_evidence ( void  ) const

inline

Get the Linkage_evidence member data.

Returns

Reference to the member data.

Definition at line 369 of file Seq_gap_.hpp.

References CSeq_gap_Base::m_Linkage_evidence.

Referenced by BOOST_AUTO_TEST_CASE(), CSeq_gap::ChangeType(), CSeq_literal::GetBridgeability(), CFastaOstream::GetGapModText(), CValidError_bioseq::HasBadWGSGap(), s_IsUnspecified(), CValidError_bioseq::ValidateSeqGap(), WriteLinkageEvidence(), and CGapsEditor::x_SetGapParameters().

GetLiteral()

const CDelta_seq_Base::TLiteral & CDelta_seq_Base::GetLiteral

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 124 of file Delta_seq_.cpp.

References CDelta_seq_Base::CheckSelected(), CDelta_seq_Base::e_Literal, and CDelta_seq_Base::m_object.

Referenced by AddLiteral(), CConvertGapsBySize::apply(), CExpandGaps::apply(), CConvertSelectedGaps::apply_impl(), CEditSelectedGaps::apply_impl(), CCombineAdjacentGaps::apply_impl(), CBlobSplitterImpl::AttachToSkeleton(), CBlobSplitterImpl::CopySequence(), CNewCleanup_imp::DeltaExtBC(), CAddLinkageToGaps::GetCommand(), CBlobSplitterImpl::GetLength(), CExpandGaps::IsSkipGap(), s_CheckSeg(), s_GetDeltaLen(), s_GetUngapLoc(), s_NsAreGaps(), CSeqMap::x_Add(), CBioseq_Info::x_CalcBioseqLength(), CGencollIdMapper::x_IsLoc_Int_InAGap(), CGapsEditor::x_SetGapParameters(), CUnorderedSplitter::x_SplitDeltaExt(), CForeignContaminationScreenReportReader::xCheckLen(), and CForeignContaminationScreenReportReader::xTrimExt().

GetLoc()

const CDelta_seq_Base::TLoc & CDelta_seq_Base::GetLoc

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 102 of file Delta_seq_.cpp.

References CDelta_seq_Base::CheckSelected(), CDelta_seq_Base::e_Loc, and CDelta_seq_Base::m_object.

Referenced by CConvertSelectedGaps::apply_impl(), CBlobSplitterImpl::GetLength(), s_GetDeltaLen(), s_GetUngapLoc(), CSeqMap::x_Add(), CBioseq_Info::x_CalcBioseqLength(), CGencollIdMapper::x_IsLoc_Int_InAGap(), and CUnorderedSplitter::x_SplitDeltaExt().

GetLocal()

const CAnnot_id_Base::TLocal & CAnnot_id_Base::GetLocal

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 112 of file Annot_id_.cpp.

References CAnnot_id_Base::CheckSelected(), CAnnot_id_Base::e_Local, and CAnnot_id_Base::m_object.

Referenced by s_GetAnnotId().

GetLocs()

const CSeq_annot_Base::C_Data::TLocs & CSeq_annot_Base::C_Data::GetLocs ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 701 of file Seq_annot_.hpp.

Referenced by Convert_Seq_annot_Seq_id(), Convert_Seq_annot_Seq_loc_All(), Convert_Seq_annot_Seq_loc_TotalRange(), and s_GetAnnotContent().

GetMap()

const CSeq_ext_Base::TMap & CSeq_ext_Base::GetMap

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 158 of file Seq_ext_.cpp.

References CSeq_ext_Base::CheckSelected(), CSeq_ext_Base::e_Map, and CSeq_ext_Base::m_object.

Referenced by CBioseqIndex::CBioseqIndex(), CSequenceTrack::CSequenceTrack(), CModifySeqId::GetCommand(), CDeflineGenerator::x_SetFlags(), and CBioseqContext::x_SetOpticalMapPoints().

GetMaploc() [1/2]

const CPubdesc_Base::TMaploc & CPubdesc_Base::GetMaploc ( void  ) const

inline

Get the Maploc member data.

Returns

Reference to the member data.

Definition at line 844 of file Pubdesc_.hpp.

References CPubdesc_Base::CanGetMaploc(), CPubdesc_Base::m_Maploc, and CSerialObject::ThrowUnassigned().

Referenced by s_CombineRefs(), and CReferenceItem::x_GatherRemark().

GetMaploc() [2/2]

const CSeqdesc_Base::TMaploc & CSeqdesc_Base::GetMaploc

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 290 of file Seqdesc_.cpp.

References CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::e_Maploc, and CSeqdesc_Base::m_object.

Referenced by CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), s_GetContentLabel(), and CCommentItem::x_GatherDescInfo().

GetMethod()

CSeqdesc_Base::TMethod CSeqdesc_Base::GetMethod ( void  ) const

inline

Get the variant data.

Returns

Copy of the variant data.

Definition at line 985 of file Seqdesc_.hpp.

References CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::e_Method, and CSeqdesc_Base::m_Method.

Referenced by CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), and s_GetContentLabel().

GetModelev()

const CSeqdesc_Base::TModelev & CSeqdesc_Base::GetModelev

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 610 of file Seqdesc_.cpp.

References CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::e_Modelev, and CSeqdesc_Base::m_object.

GetModif()

const CSeqdesc_Base::TModif & CSeqdesc_Base::GetModif ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 965 of file Seqdesc_.hpp.

References CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::e_Modif, and CSeqdesc_Base::m_Modif.

Referenced by check_GIBB(), CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), s_GetContentLabel(), CValidError_bioseq::ValidateModifDescriptors(), and CValidError_desc::ValidateSeqDesc().

GetMol()

CSeq_inst_Base::TMol CSeq_inst_Base::GetMol ( void  ) const

inline

Get the Mol member data.

Returns

Copy of the member data.

Definition at line 612 of file Seq_inst_.hpp.

References CSeq_inst_Base::CanGetMol(), CSeq_inst_Base::m_Mol, and CSerialObject::ThrowUnassigned().

Referenced by CCleanup::AddMissingMolInfo(), AppendBioseqLabel(), CClearKeywords::ApplyToCSeq_entry(), CMolInfoEditDlg::ApplyToInst(), CMolInfoEditDlg::ApplyToMolInfo(), CFastaReaderEx::AssignMolType(), BOOST_AUTO_TEST_CASE(), CAlnVec::CalculateScore(), CSequenceEditingEventHandler::ChangeToGenomicDna(), CBlobSplitterImpl::CopySequence(), CNewCleanup_imp::CreateMissingMolInfo(), CMolInfoEditDlg::CreateNewMolInfo(), CSeqMap::CSeqMap(), CSeqVector::CSeqVector(), sequpd::FindMatches(), CReadBlastApp::fit_blast(), CValidError_bioseq::GapByGapInst(), CAlnVecMultiDataSource::GetAlignType(), CSGAlignmentJob::GetAlignType(), CDataTrackUtils::GetAlignType(), CAdjustForConsensusSpliceSite::GetCommandToAdjustCDSEnds(), CDesktopBioseqItem::GetDescription(), CBioseq_set::GetGenomicFromGenProdSet(), CAutoDef::GetOneDefLine(), CMolinfo_field::GetSequenceQualFromBioseq(), CSeq_id::GetStringDescr(), CValidError_bioseq::GetTSAConflictingBiomolTechErrors(), CMolInfoField::GetVal(), CEditingActionMolInfoClass::GetValue(), CDeflineProcess::IndexedProcess(), CSeq_inst::IsAa(), IsBadSeqInstStrand(), CSeq_inst::IsNa(), CMolInfoSubpanel::OnSelectButton(), CNewCleanup_imp::ProtSeqBC(), s_is_na(), s_ReplaceAllMolinfo(), s_WillReportTerminalGap(), CFlatfileProcess::SeqEntryProcess(), CGeneOverlapProcess::SeqEntryProcess(), CGeneFeatTreeProcess::SeqEntryProcess(), CMolInfoSubpanel::SetClusters(), SrchSegSeqMol(), CBioseq_Info::sx_ShallowCopy(), CValidError_imp::ValidateBioSourceForSeq(), CValidError_bioseq::ValidateInst(), CValidError_bioseq::ValidateMolInfoContext(), CValidError_bioseq::ValidateNsAndGaps(), CValidError_bioseqset::ValidatePartsSet(), CValidError_bioseqset::ValidateSegSet(), CValidError_bioseq::ValidateSeqIds(), CSeq_id::WriteAsFasta(), CFastaOstream::x_GetBestId(), CUnorderedSplitter::x_SplitDeltaExt(), CUnorderedSplitter::x_SplitSeqData(), CPrimeCacheApplication::x_StripSeqEntry(), and CValidError_bioseq::x_ValidateAbuttingRNA().

GetMol_type()

CSeqdesc_Base::TMol_type CSeqdesc_Base::GetMol_type ( void  ) const

inline

Get the variant data.

Returns

Copy of the variant data.

Definition at line 938 of file Seqdesc_.hpp.

References CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::e_Mol_type, and CSeqdesc_Base::m_Mol_type.

Referenced by CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), s_GetContentLabel(), and CValidError_bioseq::ValidateMoltypeDescriptors().

GetMolinfo()

const CSeqdesc_Base::TMolinfo & CSeqdesc_Base::GetMolinfo

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 588 of file Seqdesc_.cpp.

References CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::e_Molinfo, and CSeqdesc_Base::m_object.

Referenced by CCleanup::AddPartialToProteinTitle(), BOOST_AUTO_TEST_CASE(), CTestProtProd::CanTest(), CCmdAddCDS::Execute(), FinalCleanup(), CFlatFileGenerator::Generate(), CFlatFileViewContext::GetEditObject(), CAutoDef::GetKeywordPrefix(), GetMolInfo(), GetSynchronizeProductMolInfoCommand(), CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), CValidError_feat::GetTSACDSOnMinusStrandErrors(), CMolInfoField::GetVal(), CEditingActionMolInfoMolecule::GetValue(), CEditingActionMolInfoTechnique::GetValue(), CEditingActionMolInfoCompletedness::GetValue(), IsBioseqTSA(), CBioseqEditor::IsEditable(), CValidError_bioseq::IsMrna(), CSeqTextDataSource::IsmRNASequence(), CValidError_imp::IsOtherDNA(), CValidError_bioseq::IsPartial(), variation::IsRightPartial(), CEditingActionMolInfoMolecule::IsSetValue(), CEditingActionMolInfoTechnique::IsSetValue(), CEditingActionMolInfoCompletedness::IsSetValue(), CValidError_bioseq::IsWGS(), MakeMailReportPreReport(), CMolInfoSubpanel::OnSelectButton(), CTabularFormatter_Tech::Print(), CTestSeqId_Biomol::RunTest(), s_DetermineComponentType(), s_GetContentLabel(), s_GetMolInfo(), CAdjustForConsensusSpliceSite::s_IsBioseqGood_AdjustEnds(), s_IsBioseqPartial(), s_IsWGS(), SeqLocPartialCheck(), CMolInfoSubpanel::SetClusters(), CCleanup::SetMolinfoBiomol(), CCleanup::SetMolinfoTech(), CReadInSkipObjectHook< Object >::SkipObject(), CMacroFunction_GetSeqdesc::TheFunction(), CMolTypeValidator::Validate(), CValidError_bioseq::ValidateBioseqContext(), CValidError_imp::ValidateBioSourceForSeq(), CValidError_bioseq::ValidateDelta(), CValidError_bioseq::ValidateDupOrOverlapFeats(), CValidError_bioseq::ValidateMolInfoContext(), CValidError_bioseq::ValidateRawConst(), CValidError_desc::ValidateSeqDesc(), CValidError_bioseq::ValidateSeqDescContext(), CCmdCreateCDS::x_AddMolinfoDescriptorToProtein(), CFeatureItem::x_AddQualProtMethod(), CSubmissionWizard::x_ApplyMolinfoToRecords(), CNewCleanup_imp::x_CleanupGenbankBlock(), CSGSegmentsSeqIDJob::x_Execute(), CNewCleanup_imp::x_ExtendSingleGeneOnMrna(), CKeywordsItem::x_GatherInfo(), CLocusItem::x_GatherInfo(), CAsn2FastaApp::x_GetFastaOstream(), CBioseqContext::x_GetMolInfo(), CAutoDef::x_GetOneNonFeatureClause(), CBioseqIndex::x_InitDescs(), CMacroFunction_AutodefComplete::x_IsComplete(), CSGSegmentSmearJob::x_LoadFromDeltaSeqs(), CPrimeCacheApplication::x_Process_Fasta(), CSplignTool::x_SelectCompatibleInputObjects(), CAutoDefFeatureClause::x_SetBiomol(), CValidError_bioseq::x_SetupCommonFlags(), CValidError_bioseq::x_ValidateAbuttingRNA(), CValidError_bioseq::x_ValidateAbuttingUTR(), CValidError_bioseq::x_ValidateBarcode(), CCdregionValidator::x_ValidateCDSPartial(), CProtValidator::x_ValidateMolinfoPartials(), CRNAValidator::x_ValidateRnaProductType(), CValidError_bioseq::x_ValidateTitle(), and CGffFeatureContext::xAssignSequenceIsGenomicRecord().

GetName() [1/5]

const CAnnotdesc_Base::TName & CAnnotdesc_Base::GetName ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 501 of file Annotdesc_.hpp.

References CAnnotdesc_Base::CheckSelected(), CAnnotdesc_Base::e_Name, and CAnnotdesc_Base::m_string.

Referenced by CSeq_annot_SplitInfo::GetName(), s_GetAnnotName(), CLDS2_AnnotDesc_Hook::SkipObject(), CAlignmentSmear::x_GetAnnotName(), and CSeq_annot_Info::x_UpdateName().

GetName() [2/5]

const CPubdesc_Base::TName & CPubdesc_Base::GetName ( void  ) const

inline

Get the Name member data.

Returns

Reference to the member data.

Definition at line 635 of file Pubdesc_.hpp.

References CPubdesc_Base::CanGetName(), CPubdesc_Base::m_Name, and CSerialObject::ThrowUnassigned().

GetName() [3/5]

const CSeq_annot_Base::TName & CSeq_annot_Base::GetName ( void  ) const

inline

Get the Name member data.

Returns

Reference to the member data.

Definition at line 805 of file Seq_annot_.hpp.

References CSeq_annot_Base::CanGetName(), CSeq_annot_Base::m_Name, and CSerialObject::ThrowUnassigned().

Referenced by CBlobSplitterImpl::MakeSeq_annot(), CSeq_annot_Handle::Seq_annot_GetName(), CGroupAlignmentsJob::x_CreateProjectItems(), and CAnnotGetter::x_GetCompleteSeqAnnot().

GetName() [4/5]

const CSeqdesc_Base::TName & CSeqdesc_Base::GetName ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 1012 of file Seqdesc_.hpp.

References CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::e_Name, and CSeqdesc_Base::m_string.

Referenced by CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), CFindASN1Dlg::ReplaceInDesc(), s_GetContentLabel(), CValidError_desc::ValidateSeqDesc(), CValidError_bioseq::ValidateSeqDescContext(), and CCommentItem::x_GatherDescInfo().

GetName() [5/5]

const CTextannot_id_Base::TName & CTextannot_id_Base::GetName ( void  ) const

inline

Get the Name member data.

Returns

Reference to the member data.

Definition at line 299 of file Textannot_id_.hpp.

References CTextannot_id_Base::CanGetName(), CTextannot_id_Base::m_Name, and CSerialObject::ThrowUnassigned().

GetNames()

const CNum_enum_Base::TNames & CNum_enum_Base::GetNames ( void  ) const

inline

Get the Names member data.

Returns

Reference to the member data.

Definition at line 255 of file Num_enum_.hpp.

References CNum_enum_Base::m_Names.

GetNcbi()

CAnnot_id_Base::TNcbi CAnnot_id_Base::GetNcbi ( void  ) const

inline

Get the variant data.

Returns

Copy of the variant data.

Definition at line 330 of file Annot_id_.hpp.

References CAnnot_id_Base::CheckSelected(), CAnnot_id_Base::e_Ncbi, and CAnnot_id_Base::m_Ncbi.

GetNcbi2na()

const CSeq_data_Base::TNcbi2na & CSeq_data_Base::GetNcbi2na ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 550 of file Seq_data_.hpp.

References CSeq_data_Base::CheckSelected(), CSeq_data_Base::e_Ncbi2na, and CSeq_data_Base::m_Ncbi2na.

Referenced by AddLiteral(), CSeqportUtil_implementation::AppendNcbi2na(), BOOST_AUTO_TEST_CASE(), ConvertRawToDeltaByNs(), CountNucleotides(), CValidError_bioseq::GetDataLen(), CBlobSplitterImpl::GetLength(), CSeqportUtil_implementation::GetNcbi2naCopy(), CSeqportUtil_implementation::Pack(), s_FixBioseqDeltas(), s_GetQuerySequence(), CWGSSeqIterator::x_GetSegmentsWithExplicitGaps(), and CWGSSeqIterator::x_GetSegmentsWithRecoveredGaps().

GetNcbi4na()

const CSeq_data_Base::TNcbi4na & CSeq_data_Base::GetNcbi4na ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 570 of file Seq_data_.hpp.

References CSeq_data_Base::CheckSelected(), CSeq_data_Base::e_Ncbi4na, and CSeq_data_Base::m_Ncbi4na.

Referenced by AddLiteral(), CSeqportUtil_implementation::AppendNcbi4na(), BOOST_AUTO_TEST_CASE(), ConvertRawToDeltaByNs(), CountNs(), CountNucleotides(), CSeqportUtil_implementation::GetAmbigs_ncbi4na_ncbi2na(), CValidError_bioseq::GetDataLen(), CBlobSplitterImpl::GetLength(), CSeqportUtil_implementation::GetNcbi4naCopy(), CSeqportUtil_implementation::MapNcbi4naToNcbi2na(), s_FixBioseqDeltas(), s_GetQuerySequence(), WriteDB_Ncbi4naToBinary(), CWGSSeqIterator::x_GetSegmentsWithExplicitGaps(), CWGSSeqIterator::x_GetSegmentsWithRecoveredGaps(), and CSequenceDataTester::x_TestSingleNucleotide_Remote().

GetNcbi8aa()

const CSeq_data_Base::TNcbi8aa & CSeq_data_Base::GetNcbi8aa ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 630 of file Seq_data_.hpp.

References CSeq_data_Base::CheckSelected(), CSeq_data_Base::e_Ncbi8aa, and CSeq_data_Base::m_Ncbi8aa.

Referenced by CValidError_bioseq::GetDataLen(), CBlobSplitterImpl::GetLength(), CSeqportUtil_implementation::Pack(), and PackSeqData().

GetNcbi8na()

const CSeq_data_Base::TNcbi8na & CSeq_data_Base::GetNcbi8na ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 590 of file Seq_data_.hpp.

References CSeq_data_Base::CheckSelected(), CSeq_data_Base::e_Ncbi8na, and CSeq_data_Base::m_Ncbi8na.

Referenced by AddLiteral(), ConvertRawToDeltaByNs(), CValidError_bioseq::GetDataLen(), CBlobSplitterImpl::GetLength(), and s_GetQuerySequence().

GetNcbieaa()

const CSeq_data_Base::TNcbieaa & CSeq_data_Base::GetNcbieaa ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 650 of file Seq_data_.hpp.

References CSeq_data_Base::CheckSelected(), CSeq_data_Base::e_Ncbieaa, and CSeq_data_Base::m_Ncbieaa.

Referenced by CSeqportUtil_implementation::AppendNcbieaa(), BOOST_AUTO_TEST_CASE(), CheckTranslatedBioseq(), CSeqportUtil_implementation::FastValidateNcbieaa(), CValidError_bioseq::GetDataLen(), CBlobSplitterImpl::GetLength(), CSeqportUtil_implementation::GetNcbieaaCopy(), GetNcbieaaString(), GetNcbistdSeq(), GetRawSequenceString(), GetSeqLength(), CSeqportUtil_implementation::Pack(), SetNewProteinSequence(), CSeqportUtil_implementation::ValidateNcbieaa(), variation::CHgvsParser::x_PlacementCoordsToStr(), variation_ref::CHgvsParser::x_prot_pos(), variation::CHgvsParser::x_prot_pos(), CVectorTrimPanel::x_RetranslateCDS(), and variation::CHgvsParser::x_SeqLiteralToStr().

GetNcbipaa()

const CSeq_data_Base::TNcbipaa & CSeq_data_Base::GetNcbipaa ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 670 of file Seq_data_.hpp.

References CSeq_data_Base::CheckSelected(), CSeq_data_Base::e_Ncbipaa, and CSeq_data_Base::m_Ncbipaa.

Referenced by CValidError_bioseq::GetDataLen(), and CSeqportUtil_implementation::Pack().

GetNcbipna()

const CSeq_data_Base::TNcbipna & CSeq_data_Base::GetNcbipna ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 610 of file Seq_data_.hpp.

References CSeq_data_Base::CheckSelected(), CSeq_data_Base::e_Ncbipna, and CSeq_data_Base::m_Ncbipna.

Referenced by CValidError_bioseq::GetDataLen().

GetNcbistdaa()

const CSeq_data_Base::TNcbistdaa & CSeq_data_Base::GetNcbistdaa ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 690 of file Seq_data_.hpp.

References CSeq_data_Base::CheckSelected(), CSeq_data_Base::e_Ncbistdaa, and CSeq_data_Base::m_Ncbistdaa.

Referenced by CSeqportUtil_implementation::AppendNcbistdaa(), CSeqportUtil_implementation::FastValidateNcbistdaa(), FindGeneticCode(), CValidError_bioseq::GetDataLen(), GetNcbieaaString(), CSeqportUtil_implementation::GetNcbistdaaCopy(), GetNcbistdSeq(), CPssm::GetQuerySequenceData(), GetRawSequenceString(), GetSeqLength(), CSeqportUtil_implementation::Pack(), PackSeqData(), s_GetQuerySequenceData(), s_GetRnaRefLabel(), CSeqportUtil_implementation::ValidateNcbistdaa(), and CSequenceDataTester::x_TestSingleProtein_Remote().

GetNum() [1/3]

CNum_enum_Base::TNum CNum_enum_Base::GetNum ( void  ) const

inline

Get the Num member data.

Returns

Copy of the member data.

Definition at line 215 of file Num_enum_.hpp.

References CNum_enum_Base::CanGetNum(), CNum_enum_Base::m_Num, and CSerialObject::ThrowUnassigned().

GetNum() [2/3]

const CPubdesc_Base::TNum & CPubdesc_Base::GetNum ( void  ) const

inline

Get the Num member data.

Returns

Reference to the member data.

Definition at line 729 of file Pubdesc_.hpp.

References CPubdesc_Base::CanGetNum(), CPubdesc_Base::m_Num, and CSerialObject::ThrowUnassigned().

GetNum() [3/3]

const CSeqdesc_Base::TNum & CSeqdesc_Base::GetNum

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 268 of file Seqdesc_.cpp.

References CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::e_Num, and CSeqdesc_Base::m_object.

GetNumexc()

CPubdesc_Base::TNumexc CPubdesc_Base::GetNumexc ( void  ) const

inline

Get the Numexc member data.

Returns

Copy of the member data.

Definition at line 757 of file Pubdesc_.hpp.

References CPubdesc_Base::CanGetNumexc(), CPubdesc_Base::m_Numexc, and CSerialObject::ThrowUnassigned().

GetOrg()

const CSeqdesc_Base::TOrg & CSeqdesc_Base::GetOrg

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 240 of file Seqdesc_.cpp.

References CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::e_Org, and CSeqdesc_Base::m_object.

Referenced by GetOrg_refOrNull(), CBioseq::GetTaxId(), CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), GetTitle(), s_GetContentLabel(), s_GetTaxId(), CValidError_bioseq::ValidateSeqDescContext(), CWriteDB_Impl::x_BuildDeflinesFromBioseq(), CNewCleanup_imp::x_CopyGBBlockDivToOrgnameDiv(), CDumpASNIndex::x_GetTaxId(), and CBlastTabularInfo::x_SetTaxInfoAll().

GetOther()

const CAnnot_id_Base::TOther & CAnnot_id_Base::GetOther

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 156 of file Annot_id_.cpp.

References CAnnot_id_Base::CheckSelected(), CAnnot_id_Base::e_Other, and CAnnot_id_Base::m_object.

GetPdb()

const CSeqdesc_Base::TPdb & CSeqdesc_Base::GetPdb

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 538 of file Seqdesc_.cpp.

References CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::e_Pdb, and CSeqdesc_Base::m_object.

Referenced by GetTitle(), CDBSourceItem::x_AddPDBBlock(), and CLocusItem::x_GetDateForBioseq().

GetPir()

const CSeqdesc_Base::TPir & CSeqdesc_Base::GetPir

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 312 of file Seqdesc_.cpp.

References CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::e_Pir, and CSeqdesc_Base::m_object.

Referenced by CDBSourceItem::x_AddPIRBlock().

GetPoly_a()

CPubdesc_Base::TPoly_a CPubdesc_Base::GetPoly_a ( void  ) const

inline

Get the Poly_a member data.

Returns

Copy of the member data.

Definition at line 804 of file Pubdesc_.hpp.

References CPubdesc_Base::CanGetPoly_a(), CPubdesc_Base::m_Poly_a, and CSerialObject::ThrowUnassigned().

Referenced by s_CombineRefs(), and CReferenceItem::x_GatherRemark().

GetPrf()

const CSeqdesc_Base::TPrf & CSeqdesc_Base::GetPrf

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 516 of file Seqdesc_.cpp.

References CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::e_Prf, and CSeqdesc_Base::m_object.

Referenced by CDBSourceItem::x_AddPRFBlock().

GetPub() [1/3]

const CAnnotdesc_Base::TPub & CAnnotdesc_Base::GetPub

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 162 of file Annotdesc_.cpp.

References CAnnotdesc_Base::CheckSelected(), CAnnotdesc_Base::e_Pub, and CAnnotdesc_Base::m_object.

GetPub() [2/3]

const CPubdesc_Base::TPub & CPubdesc_Base::GetPub ( void  ) const

inline

Get the Pub member data.

Returns

Reference to the member data.

Definition at line 605 of file Pubdesc_.hpp.

References CPubdesc_Base::m_Pub, and CPubdesc_Base::ResetPub().

Referenced by AddBioseqToTable(), CDiscrepancyContext::CParseNode::AddDescriptor(), CDiscrepancyContext::CParseNode::AddFeature(), CGlobalPubmedIdLookup::apply(), CDiscrepancyVisitorImpl< _Name >::Autofix(), BOOST_AUTO_TEST_CASE(), CheckSegPub(), CCleanupPub::CleanPubdesc(), descr_cmp(), CSubmissionWizard::ExportTemplate(), fta_strip_er_remarks(), GetAuthList(), CValidErrorFormat::GetDescriptorContent(), GetDocSumLabel(), CEditObjectSeq_desc::GetEditCommand(), CValidErrorFormat::GetFeatureContentLabel(), CPubField::GetJournal(), CCleanup::GetPubdescLabels(), CPubField::GetPubTitle(), GetPubTitleAndAuthors(), GetSeqEntryForPubdesc(), GetTextObjectDescription(), CDiscrepancyObject::GetTextObjectDescription(), CPubField::GetVals(), HasAuthor(), HasUnpubWithoutTitle(), IsCitSubMissingAffiliation(), CCleanup::IsMinPub(), IsSeqDescInList(), IEditingActionDesc::Modify(), CEditingActionDescPubTitle::Modify(), CEditingActionDescPubPmid::Modify(), IEditingActionDescAffil::Modify(), IEditingActionDescAuthors::Modify(), IEditingActionDescJournal::Modify(), CEditingActionDescAuthorNameList::Modify(), PrintBioseqXML(), CCleanup::PubAlreadyInSet(), CFindASN1Dlg::ReplaceInPubdesc(), s_FirstPubMatchesSecond(), s_GatherExistingDOIs(), s_GatherExistingPMIDs(), s_GetContentLabel(), CMacroFunction_PubFields::s_GetStatus(), s_IsCitSub(), s_IsJustUids(), s_UpdateGlobalInfo(), CRelaxedLookupDlg::SetPubdesc(), CMacroFunction_PubFields::TheFunction(), CMacroFunction_ISOJTALookup::TheFunction(), CMacroFunction_LookupPub::TheFunction(), CRemarksAndSerialNumberPanel::TransferDataFromWindow(), CRemarksAndSerialNumberPanel::TransferDataToWindow(), CValidError_imp::ValidatePubdesc(), IRemovePubs::x_ApplyToDescriptors(), IRemovePubs::x_ApplyToSeqAndFeat(), CReferenceItem::x_CreateUniqueStr(), CFlatGatherer::x_GatherCDSReferences(), CReferenceItem::x_GatherInfo(), CFlatGatherer::x_GatherReferences(), CReferenceItem::x_GatherRemark(), CPubField::x_GetImprintField(), CRelaxedLookupDlg::x_GetPubIdsEutils(), CValidError_bioseq::x_HasCitSub(), CNewCleanup_imp::x_IsPubContentBad(), and CSrcWriter::xGather().

GetPub() [3/3]

const CSeqdesc_Base::TPub & CSeqdesc_Base::GetPub

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 356 of file Seqdesc_.cpp.

References CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::e_Pub, and CSeqdesc_Base::m_object.

Referenced by AddBioseqToTable(), CDiscrepancyContext::CParseNode::AddDescriptor(), CGlobalPubmedIdLookup::apply(), CDiscrepancyVisitorImpl< _Name >::Autofix(), CCleanup::ConvertPubFeatsToPubDescs(), CCitationsPanel::CreateControls(), CReferenceItem::CReferenceItem(), descr_cmp(), CSubmissionWizard::ExtractDescriptor(), GetAuthList(), CCleanup::GetCitationList(), CReplaceSectionPanel::GetCommand(), CReplaceEntirePubPanel::GetCommand(), CValidErrorFormat::GetDescriptorContent(), CEditObjectSeq_desc::GetEditCommand(), GetPubTitle(), CPubField::GetStatus(), CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), CPubField::GetVal(), CPubField::GetVals(), IsSeqDescInList(), IEditingActionDesc::Modify(), CEditingActionDescPubTitle::Modify(), CEditingActionDescPubPmid::Modify(), IEditingActionDescAffil::Modify(), IEditingActionDescAuthors::Modify(), IEditingActionDescJournal::Modify(), CEditingActionDescAuthorNameList::Modify(), CCleanup::MoveOneFeatToPubdesc(), CMacroBioData_PubdescIter::Next(), SPubMatch::operator()(), PrintBioseqXML(), s_GetContentLabel(), s_IsCitSub(), CValidError_desc::ValidateSeqDesc(), CRelaxedLookupDlg::x_GetPubIdsEutils(), and CValidError_bioseq::x_HasCitSub().

GetReal()

const CNumbering_Base::TReal & CNumbering_Base::GetReal

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 180 of file Numbering_.cpp.

References CNumbering_Base::CheckSelected(), CNumbering_Base::e_Real, and CNumbering_Base::m_object.

GetRef() [1/2]

const CNumbering_Base::TRef & CNumbering_Base::GetRef

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 158 of file Numbering_.cpp.

References CNumbering_Base::CheckSelected(), CNumbering_Base::e_Ref, and CNumbering_Base::m_object.

GetRef() [2/2]

const CSeq_ext_Base::TRef & CSeq_ext_Base::GetRef

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 136 of file Seq_ext_.cpp.

References CSeq_ext_Base::CheckSelected(), CSeq_ext_Base::e_Ref, and CSeq_ext_Base::m_object.

Referenced by CSeqMap::CSeqMap(), CValidError_bioseq::GetLocFromSeq(), CBioseq_Info::x_CalcBioseqLength(), and CSeqdesc_CI::x_CheckRef().

GetRefnum()

CNum_cont_Base::TRefnum CNum_cont_Base::GetRefnum ( void  ) const

inline

Get the Refnum member data.

Returns

Copy of the member data.

Definition at line 272 of file Num_cont_.hpp.

References CNum_cont_Base::m_Refnum.

GetReftype()

CPubdesc_Base::TReftype CPubdesc_Base::GetReftype ( void  ) const

inline

Get the Reftype member data.

Returns

Copy of the member data.

Definition at line 1045 of file Pubdesc_.hpp.

References CPubdesc_Base::m_Reftype.

Referenced by CReferenceItem::GetReftype().

GetRegion() [1/2]

const CAnnotdesc_Base::TRegion & CAnnotdesc_Base::GetRegion

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 294 of file Annotdesc_.cpp.

References CAnnotdesc_Base::CheckSelected(), CAnnotdesc_Base::e_Region, and CAnnotdesc_Base::m_object.

Referenced by MakeCompartments(), CAdvancedAlignCleanup::x_CleanupProsplignCompartment(), and CProSplignJob::x_ProcessCompartment().

GetRegion() [2/2]

const CSeqdesc_Base::TRegion & CSeqdesc_Base::GetRegion ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 1108 of file Seqdesc_.hpp.

References CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::e_Region, and CSeqdesc_Base::m_string.

Referenced by CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), CFindASN1Dlg::ReplaceInDesc(), s_GetContentLabel(), CValidError_desc::ValidateSeqDesc(), and CCommentItem::x_GatherDescInfo().

GetRelease()

const CTextannot_id_Base::TRelease & CTextannot_id_Base::GetRelease ( void  ) const

inline

Get the Release member data.

Returns

Reference to the member data.

Definition at line 393 of file Textannot_id_.hpp.

References CTextannot_id_Base::CanGetRelease(), CTextannot_id_Base::m_Release, and CSerialObject::ThrowUnassigned().

GetReplaced_by()

const CSeq_hist_Base::TReplaced_by & CSeq_hist_Base::GetReplaced_by ( void  ) const

inline

Get the Replaced_by member data.

Returns

Reference to the member data.

Definition at line 558 of file Seq_hist_.hpp.

References CSeq_hist_Base::CanGetReplaced_by(), CSeq_hist_Base::m_Replaced_by, and CSerialObject::ThrowUnassigned().

Referenced by CBlobSplitterImpl::CopySequence(), CEditHistory::CreateControls(), CModifySeqId::GetCommand(), s_CheckDataStatus(), CValidError_bioseq::ValidateHistory(), x_FindLatestSequence(), CHistComment::x_GatherInfo(), CFlatGatherer::x_HistoryComments(), and CGenbankFormatter::x_LocusHtmlPrefix().

GetReplaces()

const CSeq_hist_Base::TReplaces & CSeq_hist_Base::GetReplaces ( void  ) const

inline

Get the Replaces member data.

Returns

Reference to the member data.

Definition at line 537 of file Seq_hist_.hpp.

References CSeq_hist_Base::CanGetReplaces(), CSeq_hist_Base::m_Replaces, and CSerialObject::ThrowUnassigned().

Referenced by CLoadSecondaryAccessions::apply(), CBlobSplitterImpl::CopySequence(), CEditHistory::CreateControls(), CAddSecondary::GetCommand(), CModifySeqId::GetCommand(), CValidError_bioseq::ValidateHistory(), CHistComment::x_GatherInfo(), CFlatGatherer::x_HistoryComments(), and CGenbankFormatter::x_LocusHtmlPrefix().

GetRepr()

CSeq_inst_Base::TRepr CSeq_inst_Base::GetRepr ( void  ) const

inline

Get the Repr member data.

Returns

Copy of the member data.

Definition at line 565 of file Seq_inst_.hpp.

References CSeq_inst_Base::CanGetRepr(), CSeq_inst_Base::m_Repr, and CSerialObject::ThrowUnassigned().

Referenced by AppendBioseqLabel(), BOOST_AUTO_TEST_CASE(), CheckTranslatedBioseq(), CSeq_inst::ConvertDeltaToRaw(), ConvertRawToDeltaByNs(), CBlobSplitterImpl::CopySequence(), CSeqMap::CSeqMap(), CRawSeqToDeltaByN::DeltaSeqToRaw(), EmblAscii(), fta_check_con_for_wgs(), CValidError_bioseq::GapByGapInst(), GenBankAsciiOrig(), CAdjustForConsensusSpliceSite::GetCommandToAdjustCDSEnds(), CDesktopBioseqItem::GetDescription(), GetTitle(), CValidError_graph::GetUngappedSeqLen(), HasAssemblyOrNullGap(), CValidError_bioseq::HasBadWGSGap(), CDeflineProcess::IndexedProcess(), CBlastBioseqMaker::IsEmptyBioseq(), CConvertBadCdsAndRnaToMiscFeat::IsExtendableLeft(), IsExtendableLeft(), CConvertBadCdsAndRnaToMiscFeat::IsExtendableRight(), IsExtendableRight(), CValidError_bioseq::IsHistAssemblyMissing(), CValidError_bioseq::IsMaster(), NormalizeUnknownLengthGaps(), CValidError_bioseq::ReportBadAssemblyGap(), ReverseComplement(), s_HasRawSequence(), s_IntervalsMatchGaps(), CUpdateSeq_Input::s_IsDeltaWithFarPointers(), CUpdateSeq_Input::s_IsDeltaWithNoGaps(), s_IsWgs_Contig(), s_WillReportTerminalGap(), CFlatfileProcess::SeqEntryProcess(), SeqToDelta(), Split_Qscore_SeqGraph_By_DeltaSeq(), CBioseq_Info::sx_ShallowCopy(), CDeflineProcess::UnindexedProcess(), CValidError_bioseq::ValidateCompleteGenome(), CValidError_graph::ValidateGraphsOnBioseq(), CValidError_bioseq::ValidateInst(), CValidError_bioseq::ValidateNsAndGaps(), CValidError_bioseq::ValidateRawConst(), CValidError_bioseq::ValidateRepr(), CValidError_bioseq::ValidateSegRef(), CValidError_annot::ValidateSeqAnnotContext(), CValidError_bioseq::ValidateSeqFeatContext(), CValidError_bioseq::ValidateSeqIds(), CFastaOstream::Write(), CSingleFeatValidator::x_CalculateLocationGaps(), CEditObjectSeq_feat::x_HandleCdsProduct(), CValidError_bioseq::x_IsRangeGap(), CValidError_bioseq::x_ParentAndComponentLocationsDiffer(), CValidError_bioseq::x_ShowBioProjectWarning(), CUnorderedSplitter::x_SplitDeltaExt(), CUnorderedSplitter::x_SplitSeqData(), CSequenceDataTester::x_TestSingleSequence_Remote(), CCdregionValidator::x_ValidateParentPartialness(), and XMLAscii().

GetSeg()

const CSeq_ext_Base::TSeg & CSeq_ext_Base::GetSeg

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 114 of file Seq_ext_.cpp.

References CSeq_ext_Base::CheckSelected(), CSeq_ext_Base::e_Seg, and CSeq_ext_Base::m_object.

Referenced by CSeqMap::CSeqMap(), CModifySeqId::GetCommand(), CValidError_bioseq::GetLocFromSeq(), CMasterContext::GetPartNumber(), s_AddPartToSegmentedBioseq(), s_TitleFromSegment(), CValidError_bioseq::ValidateSegRef(), CValidError_bioseq::ValidateSeqParts(), CBioseq_Info::x_CalcBioseqLength(), CContigItem::x_GatherInfo(), x_GetSegSeqInfoViaCDS(), and CMasterContext::x_SetNumParts().

GetSeq_data() [1/2]

const CSeq_inst_Base::TSeq_data & CSeq_inst_Base::GetSeq_data ( void  ) const

inline

Get the Seq_data member data.

Returns

Reference to the member data.

Definition at line 817 of file Seq_inst_.hpp.

References CSeq_inst_Base::CanGetSeq_data(), CSeq_inst_Base::m_Seq_data, and CSerialObject::ThrowUnassigned().

Referenced by BOOST_AUTO_TEST_CASE(), CheckTranslatedBioseq(), CkNonTerSP(), CGapsEditor::ConvertNs2Gaps(), ConvertRawToDeltaByNs(), CBlobSplitterImpl::CopySequence(), CSeqMap::CSeqMap(), GapsToDelta(), CValidError_bioseq::GetDataLen(), CBlobSplitterImpl::GetLength(), GetNcbieaaString(), GetNcbistdSeq(), CPssm::GetQuerySequenceData(), GetRawSequenceString(), GetSeqLength(), InsertStop(), MakeSeqLong(), MakeSeqVectorForResidueCounting(), CBioseq::PackAsDeltaSeq(), RawBioseqPack(), RevComp(), CWinMaskDemoApplication::Run(), s_AddSeqDataToPssm(), s_GetQuerySequence(), s_GetQuerySequenceData(), SeqToDelta(), SeqToDeltaSP(), SetNewProteinSequence(), SetSequenceEnd(), SetSequenceStart(), CBioseq_Info::sx_ShallowCopy(), CValidError_bioseq::ValidateRawConst(), CValidError_bioseq::ValidateRepr(), CCleanup::WGSCleanup(), WriteDB_Ncbi4naToBinary(), CFeatureGenerator::SImplementation::x_CollectMrnaSequence(), CVectorTrimPanel::x_RetranslateCDS(), CSequenceDataTester::x_TestSingleNucleotide_Remote(), CSequenceDataTester::x_TestSingleProtein_Remote(), and CForeignContaminationScreenReportReader::xTrimData().

GetSeq_data() [2/2]

const CSeq_literal_Base::TSeq_data & CSeq_literal_Base::GetSeq_data ( void  ) const

inline

Get the Seq_data member data.

Returns

Reference to the member data.

Definition at line 322 of file Seq_literal_.hpp.

References CSeq_literal_Base::CanGetSeq_data(), CSeq_literal_Base::m_Seq_data, and CSerialObject::ThrowUnassigned().

Referenced by AddLiteral(), variation::CVariationUtil::AttachSeq(), CheckTranslatedBioseq(), CSeq_inst::ConvertDeltaToRaw(), CGapsEditor::ConvertNs2Gaps(), CBlobSplitterImpl::CopySequence(), CNewCleanup_imp::DeltaExtBC(), CSeq_literal::GetBridgeability(), NSNPVariationHelper::GetDeltas(), GetDeltaSeqSummary(), CGuiObjectInfoVariant::GetToolTip(), NSnpGui::GetVcfType(), HasAssemblyOrNullGap(), CValidError_bioseq::HasBadWGSGap(), CVariationUtilities::IsReferenceCorrect(), variation::CVariationUtil::Remap(), CValidError_bioseq::ReportBadAssemblyGap(), ReverseComplement(), s_CheckSeg(), s_ContainsSeqDataIupacna(), s_FixBioseqDeltas(), s_GetAltRefFromInst(), s_GetFlankingGapTypes(), s_IntervalsMatchGaps(), s_IsConWithGaps(), CUpdateSeq_Input::s_IsGoodLiteral(), s_SubtractTail(), variation::CVariationUtil::TranslateNAtoAA(), CValidError_bioseq::ValidateDelta(), CSeqMap::x_Add(), CFeatureItem::x_AddQualsVariation(), CValidError_bioseq::x_CountAdjacentNs(), CValidError_graph::x_GetLitLength(), CWGSSeqIterator::x_GetSegmentsWithExplicitGaps(), CWGSSeqIterator::x_GetSegmentsWithRecoveredGaps(), variation::CHgvsParser::x_PlacementCoordsToStr(), variation_ref::CHgvsParser::x_prot_pos(), variation::CHgvsParser::x_prot_pos(), CGapsEditor::x_SetGapParameters(), CVariationNormalization_base< T >::x_Shift(), CUnorderedSplitter::x_SplitDeltaExt(), CValidError_graph::x_ValidateGraphOnDeltaBioseq(), and CForeignContaminationScreenReportReader::xTrimLiteral().

GetSeq_raw()

const CPubdesc_Base::TSeq_raw & CPubdesc_Base::GetSeq_raw ( void  ) const

inline

Get the Seq_raw member data.

Returns

Reference to the member data.

Definition at line 891 of file Pubdesc_.hpp.

References CPubdesc_Base::CanGetSeq_raw(), CPubdesc_Base::m_Seq_raw, and CSerialObject::ThrowUnassigned().

GetSeq_table()

const CSeq_annot_Base::C_Data::TSeq_table & CSeq_annot_Base::C_Data::GetSeq_table

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 153 of file Seq_annot_.cpp.

Referenced by CBlobSplitterImpl::CopyAnnot(), CTableDataSeq_annot::CreateObject(), CDataTrackUtils::GetColumnHeader(), CNAUtils::GetNATrackInfo(), CSeq_annot_Handle::GetSeq_tableNumRows(), ReadTabDelimitedTable(), s_GetAnnotId(), CSeq_annot_SplitInfo::SetSeq_annot(), CSGSegmentSmearJob::x_LoadFromNA(), CModifySeqId::x_UpdateSeqAnnot(), CBedGraphWriter::xWriteAnnotSeqTable(), and CWiggleWriter::xWriteAnnotTable().

GetSource()

const CSeqdesc_Base::TSource & CSeqdesc_Base::GetSource

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 566 of file Seqdesc_.cpp.

References CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::e_Source, and CSeqdesc_Base::m_object.

Referenced by AddBioseqToTable(), CUnculTaxTool::AddBioSource(), CQualLookupMap::AddDesc(), CDiscrepancyContext::CParseNode::AddDescriptor(), AddExceptionsToShortIntron(), CCleanup::AddPartialToProteinTitle(), CAutoDef::AddSources(), CSrcFocusSet::apply_to(), CSetTransgSrcDesc::apply_to(), COrgGeneralPanel::ApplyCommand(), CNewCleanup_imp::CdRegionEC(), CFlatFileTextItem::CFlatFileTextItem(), CSrcDescEditorPanel::ChangeSeqdesc(), CValidError_bioseq::CheckSourceDescriptor(), CCleanup::ConvertSrcFeatsToSrcDescs(), FindOrgNames(), GenerateDiffListFromBioSource(), GenerateDiffListFromDescriptors(), IEditingAction::GetActionCommand(), GetBioseqDiffs(), GetBioSource(), GetBioSourceForBioseq(), CLowerQuals::GetCommand(), CValidErrorFormat::GetDescriptorContent(), CAutoDefWithTaxonomy::GetDocsumDefLine(), CAutoDefWithTaxonomy::GetDocsumOrgDescription(), CFlatFileViewContext::GetEditObject(), CSeqUtils::GetGenCode(), GetGeneticCodeForBioseq(), variation::CVariationUtil::GetMolType(), CCleanup::GetNormalizableGeneQualPairs(), GetOrg_refOrNull(), GetRmCultureNotesCommand(), GetSeqTableForSrcQualFromSeqEntry(), GetSeqTableFromSeqEntry(), CBioseq::GetTaxId(), CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), CGuiObjectInfoComponent::GetToolTip(), CSrcTableColumnBase::GetVal(), CSrcTableColumnBase::GetVals(), CValidError_imp::HandleTaxonomyError(), CSGUtils::IsChromosome(), IsInOrganelleSmallGenomeSet(), CSGUtils::IsMitochondrion(), IsOrganelle(), CMRnaForCDS::IsOrganelle(), CSGUtils::IsPlastid(), CValidError_bioseq::IsSynthetic(), LoadFeat(), CCleanup::MakeIRDFeatsFromSourceXrefs(), MakeMailReportPostReport(), MakeMailReportPreReport(), CCleanup::MakeSmallGenomeSet(), CInfluenzaSet::OkToMakeSet(), SMatchSrc::operator()(), CTabularFormatter_SeqChrom::Print(), CTabularFormatter_SeqClone::Print(), PrintBioseqXML(), CPrimeCacheApplication::Run(), s_GetContentLabel(), s_GetTaxId(), s_GetTaxid(), CMacroFunction_MakeBoldXrefs::s_HasBarcodeDbXref(), CAdjustForConsensusSpliceSite::s_IsBioseqGood_AdjustEnds(), CAdjustForConsensusSpliceSite::s_IsBioseqGood_Relaxed(), CAdjustForConsensusSpliceSite::s_IsBioseqGood_Strict(), s_IsEmptyBioSource(), s_TitleFromSegment(), CCleanup::SetGeneticCodes(), CReadInSkipObjectHook< Object >::SkipObject(), CMacroFunction_FixFormat::TheFunction(), CMacroFunction_GetSeqdesc::TheFunction(), CBiosampleChkApp::UpdateBioSource(), CRemoteUpdater::UpdateOrgFromTaxon(), CSrcFeatValidator::Validate(), CValidError_bioseq::ValidateDupOrOverlapFeats(), CValidError_bioseq::ValidateMolInfoContext(), CValidError_bioseqset::ValidateNucProtSet(), CValidError_bioseqset::ValidatePopSet(), CValidError_desc::ValidateSeqDesc(), CValidError_bioseq::ValidateSeqDescContext(), CValidError_descr::ValidateSeqDescr(), CValidError_bioseq::ValidateSeqFeatContext(), CValidError_imp::ValidateSubSource(), CSubmissionWizard::x_ApplyDescriptorToRecord(), CSubmissionWizard::x_ApplySourceDescriptorToRecord(), CBlastQuerySourceOM::x_AutoDetectGeneticCodes(), CWriteDB_Impl::x_BuildDeflinesFromBioseq(), CNewCleanup_imp::x_ChangePopToPhy(), CNewCleanup_imp::x_CleanupGenbankBlock(), CFlatGatherer::x_CollectSourceDescriptors(), CNewCleanup_imp::x_CopyGBBlockDivToOrgnameDiv(), CNewCleanup_imp::x_ExtendSingleGeneOnMrna(), CValidErrorFormat::x_FormatBadInstCodeForSubmitterReport(), CValidErrorFormat::x_FormatBadSpecificHostForSubmitterReport(), CKeywordsItem::x_GatherInfo(), CSourceItem::x_GatherInfo(), x_GetDivisionProc(), CAutoDef::x_GetFeatureClauses(), CDumpASNIndex::x_GetTaxId(), CValidError_bioseq::x_IgnoreEndGap(), CBioseqIndex::x_InitDescs(), CNewCleanup_imp::x_MoveNpSrc(), CValidError_bioseq::x_ParentAndComponentLocationsDiffer(), variation_ref::CHgvsParser::x_SeqIdToHgvsHeader(), CBlastTabularInfo::x_SetTaxInfoAll(), CBioseqContext::x_SetTaxname(), CValidError_bioseq::x_SetupCommonFlags(), CNewCleanup_imp::x_tRNACodonEC(), CValidError_bioseq::x_ValidateCompletness(), CCdregionValidator::x_ValidateGeneticCode(), CValidError_bioseq::x_ValidateSourceFeatures(), CRNAValidator::x_ValidateTrnaCodons(), CRNAValidator::x_ValidateTrnaType(), and CGff3Writer::xWriteSequenceHeader().

GetSp()

const CSeqdesc_Base::TSp & CSeqdesc_Base::GetSp

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 406 of file Seqdesc_.cpp.

References CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::e_Sp, and CSeqdesc_Base::m_object.

Referenced by CDBSourceItem::x_AddSPBlock(), and CLocusItem::x_GetDateForBioseq().

GetSrc()

const CAnnotdesc_Base::TSrc & CAnnotdesc_Base::GetSrc

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 250 of file Annotdesc_.cpp.

References CAnnotdesc_Base::CheckSelected(), CAnnotdesc_Base::e_Src, and CAnnotdesc_Base::m_object.

GetStrand()

CSeq_inst_Base::TStrand CSeq_inst_Base::GetStrand ( void  ) const

inline

Get the Strand member data.

Returns

Copy of the member data.

Definition at line 777 of file Seq_inst_.hpp.

References CSeq_inst_Base::CanGetStrand(), CSeq_inst_Base::m_Strand, and CSerialObject::ThrowUnassigned().

Referenced by CMolInfoEditDlg::ApplyToInst(), CBlobSplitterImpl::CopySequence(), CMolinfo_field::GetSequenceQualFromBioseq(), CMolInfoField::GetVal(), CEditingActionMolInfoStrand::GetValue(), IsBadSeqInstStrand(), s_ReplaceAllMolinfo(), CBioseq_Info::sx_ShallowCopy(), CValidError_bioseq::ValidateInst(), and CValidError_bioseq::ValidateMolInfoContext().

GetTech()

CMolInfo_Base::TTech CMolInfo_Base::GetTech ( void  ) const

inline

Get the Tech member data.

Returns

Copy of the member data.

Definition at line 497 of file MolInfo_.hpp.

References CMolInfo_Base::m_Tech.

Referenced by CMolInfoEditDlg::ApplyToMolInfo(), CheckDivCode(), CFlatXrefQVal::Format(), CAlignCollapser::GetCollapsedAlgnments(), GetDescrEmblBlock(), GetGBBlock(), CAutoDef::GetKeywordPrefix(), CMolInfo::GetLabel(), CAlignCollapser::GetOnlyOtherAlignments(), CMolinfo_field::GetSequenceQualFromBioseq(), CBioseqContext::GetTech(), GetTitle(), CValidError_feat::GetTSACDSOnMinusStrandErrors(), CMolInfoField::GetVal(), CEditingActionMolInfoTechnique::GetValue(), IsBioseqTSA(), CValidError_bioseq::IsWGS(), MakeMailReportPreReport(), CTabularFormatter_Tech::Print(), s_DetermineComponentType(), s_IsTSA_Contig(), s_IsWgs_Contig(), CCleanup::SetMolinfoTech(), CReadInSkipObjectHook< Object >::SkipObject(), CValidError_bioseq::ValidateBioseqContext(), CValidError_bioseq::ValidateDelta(), CValidError_bioseq::ValidateDupOrOverlapFeats(), CValidError_desc::ValidateMolInfo(), CValidError_bioseq::ValidateMolInfoContext(), CValidError_bioseq::ValidateRawConst(), CFeatureItem::x_AddQualProtMethod(), CNewCleanup_imp::x_CleanupGenbankBlock(), CSGSegmentsSeqIDJob::x_Execute(), CKeywordsItem::x_GatherInfo(), CDeflineGenerator::x_GetModifiers(), CFlatGatherer::x_HTGSComments(), CBioseqIndex::x_InitDescs(), CSGSegmentSmearJob::x_LoadFromDeltaSeqs(), CDeflineGenerator::x_SetFlags(), CValidError_bioseq::x_SetupCommonFlags(), CValidError_bioseq::x_ValidateBarcode(), CValidError_bioseq::x_ValidateCompletness(), XMLGetEMBLBlock(), and XMLGetGBBlock().

GetTechexp()

const CMolInfo_Base::TTechexp & CMolInfo_Base::GetTechexp ( void  ) const

inline

Get the Techexp member data.

Returns

Reference to the member data.

Definition at line 534 of file MolInfo_.hpp.

References CMolInfo_Base::CanGetTechexp(), CMolInfo_Base::m_Techexp, and CSerialObject::ThrowUnassigned().

Referenced by fta_check_mga_keywords(), CMolInfo::GetLabel(), and CMolInfoField::GetVal().

GetTitle() [1/2]

const CAnnotdesc_Base::TTitle & CAnnotdesc_Base::GetTitle ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 521 of file Annotdesc_.hpp.

References CAnnotdesc_Base::CheckSelected(), CAnnotdesc_Base::e_Title, and CAnnotdesc_Base::m_string.

Referenced by NSnpBins::ReadAnnotDesc().

GetTitle() [2/2]

const CSeqdesc_Base::TTitle & CSeqdesc_Base::GetTitle ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 1032 of file Seqdesc_.hpp.

References CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::e_Title, and CSeqdesc_Base::m_string.

Referenced by CExportTableDlg::AddDeflinesToTable(), AddModToDefline(), AddModVectorToDefline(), AddOrgToDefline(), BOOST_AUTO_TEST_CASE(), CheckDeflineMatches(), CountDefLineConflicts(), CChangeSeqdescTitleCommand::Execute(), CSourceModParserWrapper::ExtractTitleAndApplyAllMods(), CEditObjectSeq_desc::GetEditCommand(), CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), GetTitle(), CAlignFormatUtil::GetTitle(), CDefinitionLineField::GetVal(), CEditingActionDescDefline::GetValue(), CDefinitionLineField::IsEmpty(), CSGTraceGraphDS::LoadData(), CApplyMods::operator()(), STitleMatchString::operator()(), CFindASN1Dlg::ReplaceInDesc(), s_GetContentLabel(), CDefinitionLineField::SetVal(), CReadInSkipObjectHook< Object >::SkipObject(), UpdateOneDefLine(), CValidError_imp::ValidateBioSourceForSeq(), CValidError_bioseq::ValidateCompleteGenome(), CValidError_desc::ValidateSeqDesc(), CValidError_bioseq::ValidateSeqDescContext(), CVdbFastaExtractor::Write(), CWriteDB_Impl::x_BuildDeflinesFromBioseq(), CMacroFunction_ParsedText::x_GetSpecialField(), CBioseqIndex::x_InitDescs(), CValidError_bioseq::x_ShowBioProjectWarning(), CMakeProfileDBApp::x_UpdateCobalt(), and CValidError_bioseq::x_ValidateCompletness().

GetTopology()

CSeq_inst_Base::TTopology CSeq_inst_Base::GetTopology ( void  ) const

inline

Get the Topology member data.

Returns

Copy of the member data.

Definition at line 733 of file Seq_inst_.hpp.

References CSeq_inst_Base::m_Topology.

Referenced by CMolInfoEditDlg::ApplyToInst(), CFeatureGenerator::SImplementation::ConvertMixedAlignToAnnot(), CBlobSplitterImpl::CopySequence(), FindGene(), fta_set_molinfo_completeness(), GetEmblInst(), CMolinfo_field::GetSequenceQualFromBioseq(), CMolInfoField::GetVal(), CEditingActionMolInfoTopology::GetValue(), IsExtendableLeft(), IsExtendableRight(), CMolInfoSubpanel::OnSelectButton(), CNewCleanup_imp::ProtSeqBC(), s_ReplaceAllMolinfo(), CMolInfoSubpanel::SetClusters(), CBioseq_Info::sx_ShallowCopy(), CValidError_bioseq::ValidateInst(), CValidError_imp::ValidateSeqLoc(), CValidError_bioseq::x_BadMetazoanMitochondrialLength(), CValidError_bioseq::x_IgnoreEndGap(), and CValidError_bioseq::x_ValidateCompletness().

GetType() [1/3]

CLinkage_evidence_Base::TType CLinkage_evidence_Base::GetType ( void  ) const

inline

Get the Type member data.

Returns

Copy of the member data.

Definition at line 191 of file Linkage_evidence_.hpp.

References CLinkage_evidence_Base::CanGetType(), CLinkage_evidence_Base::m_Type, and CSerialObject::ThrowUnassigned().

Referenced by CFastaOstream::GetGapModText(), s_IsUnspecified(), and CValidError_bioseq::ValidateSeqGap().

GetType() [2/3]

CNum_ref_Base::TType CNum_ref_Base::GetType ( void  ) const

inline

Get the Type member data.

Returns

Copy of the member data.

Definition at line 228 of file Num_ref_.hpp.

References CNum_ref_Base::CanGetType(), CNum_ref_Base::m_Type, and CSerialObject::ThrowUnassigned().

GetType() [3/3]

CSeq_gap_Base::TType CSeq_gap_Base::GetType ( void  ) const

inline

Get the Type member data.

Returns

Copy of the member data.

Definition at line 282 of file Seq_gap_.hpp.

References CSeq_gap_Base::CanGetType(), CSeq_gap_Base::m_Type, and CSerialObject::ThrowUnassigned().

Referenced by CSeq_gap::AddLinkageEvidence(), BOOST_AUTO_TEST_CASE(), CSeq_literal::GetBridgeability(), CFastaOstream::GetGapModText(), CValidError_bioseq::HasBadWGSGap(), CValidError_bioseq::ReportBadAssemblyGap(), ResetLinkageEvidence(), s_GetFlankingGapTypes(), CUpdateSeq_Input::s_IsGoodLiteral(), s_SubtractTail(), CValidError_bioseq::ValidateDelta(), and CValidError_bioseq::ValidateSeqGap().

GetUnits()

const CNum_real_Base::TUnits & CNum_real_Base::GetUnits ( void  ) const

inline

Get the Units member data.

Returns

Reference to the member data.

Definition at line 348 of file Num_real_.hpp.

References CNum_real_Base::CanGetUnits(), CNum_real_Base::m_Units, and CSerialObject::ThrowUnassigned().

GetUpdate_date() [1/2]

const CAnnotdesc_Base::TUpdate_date & CAnnotdesc_Base::GetUpdate_date

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 228 of file Annotdesc_.cpp.

References CAnnotdesc_Base::CheckSelected(), CAnnotdesc_Base::e_Update_date, and CAnnotdesc_Base::m_object.

GetUpdate_date() [2/2]

const CSeqdesc_Base::TUpdate_date & CSeqdesc_Base::GetUpdate_date

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 494 of file Seqdesc_.cpp.

References CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::e_Update_date, and CSeqdesc_Base::m_object.

Referenced by CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), SLaterDate::operator()(), s_GetContentLabel(), s_GetDate(), CValidError_desc::ValidateSeqDesc(), CValidError_bioseq::ValidateSeqDescContext(), CDateItem::x_GatherInfo(), CLocusItem::x_GetDateForBioseq(), and CStartItem::x_SetDate().

GetUser() [1/2]

const CAnnotdesc_Base::TUser & CAnnotdesc_Base::GetUser

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 184 of file Annotdesc_.cpp.

References CAnnotdesc_Base::CheckSelected(), CAnnotdesc_Base::e_User, and CAnnotdesc_Base::m_object.

Referenced by CSeq_annot_SplitInfo::GetName(), CReadUtil::GetTrackValue(), MakeCompartments(), CProjectItemExtra::SetStr(), CBedWriter::WriteAnnot(), CBioseqContext::x_CheckForShowComments(), CAlignmentSmear::x_GetAnnotName(), CSeq_annot_Info::x_UpdateName(), and CVcfReader::xAssignVcfMeta().

GetUser() [2/2]

const CSeqdesc_Base::TUser & CSeqdesc_Base::GetUser

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 384 of file Seqdesc_.cpp.

References CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::e_User, and CSeqdesc_Base::m_object.

Referenced by AddBioseqToTable(), AddUserObjectFieldItems(), CUnreviewedPanel::ChangeSeqdesc(), CValidError_bioseq::CheckForMultipleStructuredComments(), descr_cmp(), CSubmissionWizard::ExtractDescriptor(), CDeflineGenerator::GenerateDefline(), CDBLinkField::GetApplyObjects(), CStructuredCommentField::GetApplyObjects(), CLocalIDField::GetApplyObjects(), CStructCommFieldValuePair::GetApplyObjects(), GetBioseqDiffs(), GetDBLinkIDs(), CValidErrorFormat::GetDescriptorContent(), CEditObjectSeq_desc::GetDescriptorType(), CEditObjectSeq_desc::GetEditCommand(), CSGUtils::GetFeatFetchDepth(), CBioseq_Info::GetFeatureFetchPolicy(), CStructCommentSubpanel::GetLabelsFromSeq(), CApplyStructCommentTreeItemData::GetMacroDescription(), CWGSDb::GetMasterDescrType(), CDBLinkField::GetObjects(), CStructuredCommentField::GetObjects(), GetOptionsForSet(), CDBLinkField::GetRelatedObjects(), CStructuredCommentField::GetRelatedObjects(), CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), CSequenceTrack::GetTooltip(), CGenomeProjectField::GetVal(), CDBLinkField::GetVals(), CLocalIDField::GetVals(), CStructuredCommentField::GetVals(), CEditingActionDescGenomeProjectId::GetValue(), CEditingActionDescStructCommDbName::GetValue(), CDiscrepancyContext::IsBGPipe(), CTable2AsnContext::IsDBLink(), CDBLinkField::IsEmpty(), CGenomeProjectField::IsEmpty(), CLocalIDField::IsEmpty(), CStructuredCommentField::IsEmpty(), CEditingActionDescGenomeProjectId::IsSetValue(), CEditingActionDescStructCommDbName::IsSetValue(), CValidError_align::IsTpaAlignment(), CSeqEntrySource::IsUnverified(), CValidError_desc::IsValidStructuredComment(), isVersionsObject(), CMultiReader::LoadTemplate(), CEditingActionDescUserObject::Modify(), CEditingActionDescStructCommFieldName::Modify(), PrintBioseqXML(), CAutoDef::RegenerateDefLine(), CAutoDef::RegenerateSequenceDefLines(), CReorderStructuredComment::reorder_comment_by_rule(), CEditingActionDescGenomeProjectId::ResetValue(), CEditingActionDescStructCommDbName::ResetValue(), s_FastaGetOriginalID(), s_GetContentLabel(), s_GetOptionsForSet(), s_GetOriginalID(), s_GetUserObjectType(), s_HasRefSeqPGAPStructuredComment(), s_IsBioSample(), s_IsDBLink(), s_IsGoodDescr(), s_IsReportableStructuredComment(), s_IsTpa(), CMacroFunction_RefreshDefline::s_RefreshDeflineCommand(), s_SeqDescCompare(), CDescrCache::SetDBLink(), CDescrCache::SetFileTrack(), CDescrCache::SetGenomeProjects(), CDescrCache::SetTpaAssembly(), CEditingActionDescUserObject::SetValue(), CEditingActionDescStructCommDbName::SetValue(), CValidError_bioseqset::ShouldHaveNoDblink(), CPropagateDescriptors::ShouldStayInPlace(), CMacroFunction_AddDBLink::TheFunction(), CMacroFunction_ParseToStructComm::TheFunction(), CMacroFunction_SetStructCommDb::TheFunction(), CValidError_bioseq::ValidateDelta(), CValidError_bioseqset::ValidateNucProtSet(), CValidError_desc::ValidateSeqDesc(), CValidError_bioseq::ValidateSeqDescContext(), CValidError_desc::ValidateStructuredCommentInternal(), CValidError_bioseq::ValidateWGSMaster(), CSubmissionWizard::x_ApplyDescriptorToRecord(), CCommentItem::x_GatherDescInfo(), CWriteDB_Impl::x_GetFastaReaderDeflines(), CAutoDef::x_GetFeatureClauses(), CStructCommFieldValuePair::x_GetUser_Object(), CCommonComponentScorer::x_GetUserCompList(), CValidError_bioseq::x_HasPGAPStructuredComment(), CBioseqIndex::x_InitDescs(), CNewCleanup_imp::x_IsDBLinkUserObj(), CGenbankFormatter::x_LocusHtmlPrefix(), CValidError_bioseq::x_ShowBioProjectWarning(), CFlatGatherer::x_StructuredComments(), CValidError_desc::x_ValidateStructuredCommentPrefix(), CValidError_desc::x_ValidateStructuredCommentUsingRule(), and CSrcWriter::xGetOriginalId().

GetVersion()

CTextannot_id_Base::TVersion CTextannot_id_Base::GetVersion ( void  ) const

inline

Get the Version member data.

Returns

Copy of the member data.

Definition at line 447 of file Textannot_id_.hpp.

References CTextannot_id_Base::CanGetVersion(), CTextannot_id_Base::m_Version, and CSerialObject::ThrowUnassigned().

Referenced by CSeq_annot_SplitInfo::GetName(), and CSeq_annot_Info::x_UpdateName().

IsAlign() [1/2]

bool CAnnotdesc_Base::IsAlign ( void  ) const

inline

Check if variant Align is selected.

Align type is defined as 'typedef CAlign_def TAlign'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 585 of file Annotdesc_.hpp.

References CAnnotdesc_Base::e_Align, and CAnnotdesc_Base::m_choice.

IsAlign() [2/2]

bool CSeq_annot_Base::C_Data::IsAlign ( void  ) const

inline

Check if variant Align is selected.

Align type is defined as 'typedef list< CRef< CSeq_align > > TAlign'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 635 of file Seq_annot_.hpp.

Referenced by AlignmentCollection::addPendingAlignment(), CTestBlastp::CanTest(), Convert_Seq_annot_Seq_align(), EraseRow(), GetDenDiagSet(), CCdCore::GetNumRows(), CSeq_annot::IsAlign(), CSeq_annot_Handle::IsAlign(), UpdateViewer::SaveAlignments(), CRemoveSeqFromAlignDlg::SearchSeq_entry(), SetDenDiagSet(), CSplitDataLoader::x_SplitAligns(), and CGff2Reader::xAssignAnnotId().

IsBool()

bool CSeq_hist_Base::C_Deleted::IsBool ( void  ) const

inline

Check if variant Bool is selected.

Bool type is defined as 'typedef bool TBool'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 467 of file Seq_hist_.hpp.

Referenced by CEditHistory::CreateControls().

IsComment() [1/2]

bool CAnnotdesc_Base::IsComment ( void  ) const

inline

Check if variant Comment is selected.

Comment type is defined as 'typedef string TComment'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 535 of file Annotdesc_.hpp.

References CAnnotdesc_Base::e_Comment, and CAnnotdesc_Base::m_choice.

Referenced by NSnpBins::ReadAnnotDesc(), and CFlatGatherer::x_AnnotComments().

IsComment() [2/2]

bool CSeqdesc_Base::IsComment ( void  ) const

inline

Check if variant Comment is selected.

Comment type is defined as 'typedef string TComment'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 1052 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Comment, and CSeqdesc_Base::m_choice.

Referenced by CCommentDescField::GetVal(), CEditingActionDescComment::GetValue(), CCommentDescField::IsEmpty(), CEditingActionDescCommentDescriptor::IsSetValue(), CEditingActionDescComment::IsSetValue(), CEditingActionDescComment::Modify(), CFindASN1Dlg::ReplaceInDesc(), CDescrCache::SetComment(), and CCommentDescField::SetVal().

IsCont()

bool CNumbering_Base::IsCont ( void  ) const

inline

Check if variant Cont is selected.

Cont type is defined as 'typedef CNum_cont TCont'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 316 of file Numbering_.hpp.

References CNumbering_Base::e_Cont, and CNumbering_Base::m_choice.

IsCreate_date() [1/2]

bool CAnnotdesc_Base::IsCreate_date ( void  ) const

inline

Check if variant Create_date is selected.

Create_date type is defined as 'typedef CDate TCreate_date'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 567 of file Annotdesc_.hpp.

References CAnnotdesc_Base::e_Create_date, and CAnnotdesc_Base::m_choice.

Referenced by NSnp::GetCreateTime().

IsCreate_date() [2/2]

bool CSeqdesc_Base::IsCreate_date ( void  ) const

inline

Check if variant Create_date is selected.

Create_date type is defined as 'typedef CDate TCreate_date'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 1146 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Create_date, and CSeqdesc_Base::m_choice.

Referenced by CPropagateDescriptors::ShouldStayInPlace().

IsDate()

bool CSeq_hist_Base::C_Deleted::IsDate ( void  ) const

inline

Check if variant Date is selected.

Date type is defined as 'typedef CDate TDate'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 494 of file Seq_hist_.hpp.

Referenced by CEditHistory::CreateControls().

IsDbxref()

bool CSeqdesc_Base::IsDbxref ( void  ) const

inline

Check if variant Dbxref is selected.

Dbxref type is defined as 'typedef CDbtag TDbxref'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 1134 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Dbxref, and CSeqdesc_Base::m_choice.

IsDelta()

bool CSeq_ext_Base::IsDelta ( void  ) const

inline

Check if variant Delta is selected.

Delta type is defined as 'typedef CDelta_ext TDelta'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 336 of file Seq_ext_.hpp.

References CSeq_ext_Base::e_Delta, and CSeq_ext_Base::m_choice.

Referenced by CConvertGapsBySize::apply(), CExpandGaps::apply(), CConvertSelectedGaps::apply_impl(), CEditSelectedGaps::apply_impl(), CCombineAdjacentGaps::apply_impl(), AssemblyGapsToDelta(), CBioseqIndex::CBioseqIndex(), CheckTranslatedBioseq(), CGapsEditor::ConvertNs2Gaps(), DeltaBioseqPack(), ExtractExtraIds(), fta_check_con_for_wgs(), fta_create_wgs_seqid(), CAddLinkageToGaps::GetCommand(), CModifySeqId::GetCommand(), GetDeltaSeqForPosition(), GetDeltaSeqSummary(), CLocusItem::GetDivision(), HasAssemblyOrNullGap(), CValidError_bioseq::HasBadWGSGap(), CConvertBadCdsAndRnaToMiscFeat::IsExtendableLeft(), IsExtendableLeft(), CConvertBadCdsAndRnaToMiscFeat::IsExtendableRight(), IsExtendableRight(), CValidError_bioseq::IsSelfReferential(), CValidError_bioseq::ReportBadAssemblyGap(), ReverseComplement(), CAsnCacheTestApplication::Run(), s_GetFlankingGapTypes(), s_GetUngapLoc(), s_IsConWithGaps(), CUpdateSeq_Input::s_IsDeltaWithFarPointers(), CUpdateSeq_Input::s_IsDeltaWithNoGaps(), s_NsAreGaps(), CUnorderedSplitter::SplitId(), CUnorderedSplitter::SplitLoc(), CValidError_bioseq::ValidateCompleteGenome(), CValidError_bioseq::ValidateDelta(), CValidError_bioseq::ValidateRepr(), CPrimeCacheApplication::x_ExtractDelta(), CSingleFeatValidator::x_FindStartOfGap(), CCommonComponentScorer::x_GetDeltaExtCompList(), CValidError_bioseq::x_HasGap(), CValidError_bioseq::x_IsDeltaLitOnly(), CBioseqContext::x_IsDeltaLitOnly(), CValidError_bioseq::x_IsRangeGap(), CValidError_bioseq::x_ParentAndComponentLocationsDiffer(), CForeignContaminationScreenReportReader::xCheckLen(), xf_IsDeltaLitOnly(), and CForeignContaminationScreenReportReader::xTrimExt().

IsEmbl()

bool CSeqdesc_Base::IsEmbl ( void  ) const

inline

Check if variant Embl is selected.

Embl type is defined as 'typedef CEMBL_block TEmbl'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 1140 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Embl, and CSeqdesc_Base::m_choice.

IsEnum()

bool CNumbering_Base::IsEnum ( void  ) const

inline

Check if variant Enum is selected.

Enum type is defined as 'typedef CNum_enum TEnum'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 322 of file Numbering_.hpp.

References CNumbering_Base::e_Enum, and CNumbering_Base::m_choice.

IsFtable()

bool CSeq_annot_Base::C_Data::IsFtable ( void  ) const

inline

Check if variant Ftable is selected.

Ftable type is defined as 'typedef list< CRef< CSeq_feat > > TFtable'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 615 of file Seq_annot_.hpp.

Referenced by Convert_Seq_annot_Seq_feat(), CVariationUtilities::CorrectRefAllele(), CDataTrackUtils::GetFeatSubtypes(), GetInteractionDataFromIbis(), CAnnotationLoader::GetNextAnnot(), CSeq_annot::IsFtable(), CSeq_annot_Handle::IsFtable(), CMakeCdrProds::MakeCdrProds(), CBlobSplitterImpl::MakeID2Chunk(), CPromote::PromoteFeatures(), SrchCdRegion(), CMytestApplication::TestFeatureGeneOverlap(), CUCSCRegionWriter::WriteAnnot(), CSequenceEditingEventHandler::x_CacheSelectedLocations(), CVariationNormalization_base< T >::x_Shift(), CSplitDataLoader::x_SplitFeats(), CFormatGuessEx::x_TryBed15(), CFormatGuessEx::x_TryWiggle(), and CMultiReaderApp::xPostProcessAnnot().

IsGap()

bool CSeq_data_Base::IsGap ( void  ) const

inline

Check if variant Gap is selected.

Gap type is defined as 'typedef CSeq_gap TGap'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 704 of file Seq_data_.hpp.

References CSeq_data_Base::e_Gap, and CSeq_data_Base::m_choice.

Referenced by BOOST_AUTO_TEST_CASE(), CSeq_inst::ConvertDeltaToRaw(), CGapsEditor::ConvertNs2Gaps(), CBlobSplitterImpl::CopySequence(), CSeqMap::CSeqMap(), HasAssemblyOrNullGap(), RawBioseqPack(), ReverseComplement(), s_CheckSeg(), s_FixBioseqDeltas(), s_GetFlankingGapTypes(), s_IntervalsMatchGaps(), s_IsConWithGaps(), s_NewGapItem(), CValidError_bioseq::ValidateDelta(), CValidError_bioseq::ValidateRawConst(), CSeqMap::x_Add(), CValidError_graph::x_GetLitLength(), CBioseqIndex::x_InitGaps(), CGapsEditor::x_SetGapParameters(), CSeqMap::x_SetSegmentGap(), CUnorderedSplitter::x_SplitDeltaExt(), CValidError_graph::x_ValidateGraphOnDeltaBioseq(), and CForeignContaminationScreenReportReader::xTrimLiteral().

IsGenbank()

bool CSeqdesc_Base::IsGenbank ( void  ) const

inline

Check if variant Genbank is selected.

Genbank type is defined as 'typedef CGB_block TGenbank'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 1090 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Genbank, and CSeqdesc_Base::m_choice.

Referenced by CGenbankKeywordField::ClearVal(), CGBBlockField::ClearVal(), CGenbankKeywordField::GetVals(), CGBBlockField::GetVals(), CGenbankKeywordField::IsEmpty(), CGBBlockField::IsEmpty(), variation::IsRefSeqGene(), CFindASN1Dlg::ReplaceInDesc(), CMacroFunction_RemoveQual::s_RemoveFields(), CDescrCache::SetGBblock(), CGBBlockField::SetVal(), and CGenbankKeywordField::SetVal().

IsGeneral()

bool CAnnot_id_Base::IsGeneral ( void  ) const

inline

Check if variant General is selected.

General type is defined as 'typedef CDbtag TGeneral'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 351 of file Annot_id_.hpp.

References CAnnot_id_Base::e_General, and CAnnot_id_Base::m_choice.

Referenced by s_GetAnnotId().

IsGraph()

bool CSeq_annot_Base::C_Data::IsGraph ( void  ) const

inline

Check if variant Graph is selected.

Graph type is defined as 'typedef list< CRef< CSeq_graph > > TGraph'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 655 of file Seq_annot_.hpp.

Referenced by Convert_Seq_annot_Seq_graph(), CSeq_annot::IsGraph(), CSeq_annot_Handle::IsGraph(), CSplitDataLoader::x_SplitGraphs(), and CModifySeqId::x_UpdateSeqAnnot().

IsHet()

bool CSeqdesc_Base::IsHet ( void  ) const

inline

Check if variant Het is selected.

Het type is defined as 'typedef CHeterogen THet'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 1170 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Het, and CSeqdesc_Base::m_choice.

IsIds()

bool CSeq_annot_Base::C_Data::IsIds ( void  ) const

inline

Check if variant Ids is selected.

Ids type is defined as 'typedef list< CRef< CSeq_id > > TIds'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 675 of file Seq_annot_.hpp.

Referenced by CSeq_annot::IsIds(), CSeq_annot_Handle::IsIds(), and CModifySeqId::x_UpdateSeqAnnot().

IsIupacaa()

bool CSeq_data_Base::IsIupacaa ( void  ) const

inline

Check if variant Iupacaa is selected.

Iupacaa type is defined as 'typedef CIUPACaa TIupacaa'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 524 of file Seq_data_.hpp.

References CSeq_data_Base::e_Iupacaa, and CSeq_data_Base::m_choice.

Referenced by CheckTranslatedBioseq(), NSNPVariationHelper::GetDeltas(), GetNcbieaaString(), GetNcbistdSeq(), GetRawSequenceString(), GetSeqLength(), CGuiObjectInfoVariant::GetToolTip(), NSnpGui::GetVcfType(), MakeSeqLong(), CSeqAnnotFromFasta::PurgeNonAlphaFromSequence(), SetNewProteinSequence(), TrimStopsFromCompleteCDS(), CCleanup::WGSCleanup(), CVectorTrimPanel::x_RetranslateCDS(), variation_ref::CHgvsParser::x_SeqLiteralToStr(), and variation::CHgvsParser::x_SeqLiteralToStr().

IsIupacna()

bool CSeq_data_Base::IsIupacna ( void  ) const

inline

Check if variant Iupacna is selected.

Iupacna type is defined as 'typedef CIUPACna TIupacna'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 504 of file Seq_data_.hpp.

References CSeq_data_Base::e_Iupacna, and CSeq_data_Base::m_choice.

Referenced by BOOST_AUTO_TEST_CASE(), variation::ContainsIupacNaAmbiguities(), CNewCleanup_imp::DeltaExtBC(), NSNPVariationHelper::GetDeltas(), CGuiObjectInfoVariant::GetToolTip(), NSnpGui::GetVcfType(), MakeSeqLong(), RevComp(), s_ContainsSeqDataIupacna(), CVdbFastaExtractor::Write(), CValidError_bioseq::x_CountAdjacentNs(), variation_ref::CHgvsParser::x_SeqLiteralToStr(), and variation::CHgvsParser::x_SeqLiteralToStr().

IsLiteral()

bool CDelta_seq_Base::IsLiteral ( void  ) const

inline

Check if variant Literal is selected.

Literal type is defined as 'typedef CSeq_literal TLiteral'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 263 of file Delta_seq_.hpp.

References CDelta_seq_Base::e_Literal, and CDelta_seq_Base::m_choice.

Referenced by AddLiteral(), CConvertSelectedGaps::apply_impl(), CNewCleanup_imp::DeltaExtBC(), CExpandGaps::IsSkipGap(), s_CheckSeg(), s_GetDeltaLen(), s_GetUngapLoc(), s_NsAreGaps(), CGencollIdMapper::x_IsLoc_Int_InAGap(), CUnorderedSplitter::x_SplitDeltaExt(), and CForeignContaminationScreenReportReader::xCheckLen().

IsLoc()

bool CDelta_seq_Base::IsLoc ( void  ) const

inline

Check if variant Loc is selected.

Loc type is defined as 'typedef CSeq_loc TLoc'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 257 of file Delta_seq_.hpp.

References CDelta_seq_Base::e_Loc, and CDelta_seq_Base::m_choice.

Referenced by CConvertSelectedGaps::apply_impl(), s_GetDeltaLen(), s_GetUngapLoc(), CGencollIdMapper::x_IsLoc_Int_InAGap(), CUnorderedSplitter::x_SplitDeltaExt(), and CForeignContaminationScreenReportReader::xCheckLen().

IsLocal()

bool CAnnot_id_Base::IsLocal ( void  ) const

inline

Check if variant Local is selected.

Local type is defined as 'typedef CObject_id TLocal'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 318 of file Annot_id_.hpp.

References CAnnot_id_Base::e_Local, and CAnnot_id_Base::m_choice.

Referenced by s_GetAnnotId().

IsLocs()

bool CSeq_annot_Base::C_Data::IsLocs ( void  ) const

inline

Check if variant Locs is selected.

Locs type is defined as 'typedef list< CRef< CSeq_loc > > TLocs'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 695 of file Seq_annot_.hpp.

Referenced by CSeq_annot::IsLocs(), CSeq_annot_Handle::IsLocs(), and CModifySeqId::x_UpdateSeqAnnot().

IsMap()

bool CSeq_ext_Base::IsMap ( void  ) const

inline

Check if variant Map is selected.

Map type is defined as 'typedef CMap_ext TMap'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 330 of file Seq_ext_.hpp.

References CSeq_ext_Base::e_Map, and CSeq_ext_Base::m_choice.

Referenced by CBioseqIndex::CBioseqIndex(), CSequenceTrack::CSequenceTrack(), CModifySeqId::GetCommand(), CValidError_bioseq::ValidateRepr(), CAutogeneratedExtendedCleanup::x_ExtendedCleanupBioseq_inst(), and CDeflineGenerator::x_SetFlags().

IsMaploc()

bool CSeqdesc_Base::IsMaploc ( void  ) const

inline

Check if variant Maploc is selected.

Maploc type is defined as 'typedef CDbtag TMaploc'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 1078 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Maploc, and CSeqdesc_Base::m_choice.

IsMethod()

bool CSeqdesc_Base::IsMethod ( void  ) const

inline

Check if variant Method is selected.

Method type is defined as 'typedef EGIBB_method TMethod'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 979 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Method, and CSeqdesc_Base::m_choice.

IsModelev()

bool CSeqdesc_Base::IsModelev ( void  ) const

inline

Check if variant Modelev is selected.

Modelev type is defined as 'typedef CModelEvidenceSupport TModelev'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 1202 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Modelev, and CSeqdesc_Base::m_choice.

IsModif()

bool CSeqdesc_Base::IsModif ( void  ) const

inline

Check if variant Modif is selected.

Modif type is defined as 'typedef list< EGIBB_mod > TModif'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 959 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Modif, and CSeqdesc_Base::m_choice.

IsMol_type()

bool CSeqdesc_Base::IsMol_type ( void  ) const

inline

Check if variant Mol_type is selected.

Mol_type type is defined as 'typedef EGIBB_mol TMol_type'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 932 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Mol_type, and CSeqdesc_Base::m_choice.

IsMolinfo()

bool CSeqdesc_Base::IsMolinfo ( void  ) const

inline

Check if variant Molinfo is selected.

Molinfo type is defined as 'typedef CMolInfo TMolinfo'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 1196 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Molinfo, and CSeqdesc_Base::m_choice.

Referenced by CCleanup::AddPartialToProteinTitle(), CMolInfoField::ClearVal(), CEditObjectSeq_desc::CreateWindow(), CEditObjectSeq_desc::GetEditCommand(), CMolInfoField::GetVal(), variation::IsRightPartial(), CDescrCache::SetMolInfo(), CMolInfoField::SetVal(), CPropagateDescriptors::ShouldStayInPlace(), CReadInSkipObjectHook< Object >::SkipObject(), sReportInvalidDescriptor(), CValidError_imp::ValidateBioSourceForSeq(), CSubmissionWizard::x_ApplyDescriptorToRecord(), CSubmissionWizard::x_ApplyMolinfoToRecords(), and CGffFeatureContext::xAssignSequenceIsGenomicRecord().

IsName() [1/2]

bool CAnnotdesc_Base::IsName ( void  ) const

inline

Check if variant Name is selected.

Name type is defined as 'typedef string TName'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 495 of file Annotdesc_.hpp.

References CAnnotdesc_Base::e_Name, and CAnnotdesc_Base::m_choice.

Referenced by s_GetAnnotName(), and CLDS2_AnnotDesc_Hook::SkipObject().

IsName() [2/2]

bool CSeqdesc_Base::IsName ( void  ) const

inline

Check if variant Name is selected.

Name type is defined as 'typedef string TName'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 1006 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Name, and CSeqdesc_Base::m_choice.

Referenced by CFindASN1Dlg::ReplaceInDesc(), and CValidError_bioseq::ValidateSeqDescContext().

IsNcbi()

bool CAnnot_id_Base::IsNcbi ( void  ) const

inline

Check if variant Ncbi is selected.

Ncbi type is defined as 'typedef NCBI_NS_NCBI::TEntrezId TNcbi'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 324 of file Annot_id_.hpp.

References CAnnot_id_Base::e_Ncbi, and CAnnot_id_Base::m_choice.

IsNcbi2na()

bool CSeq_data_Base::IsNcbi2na ( void  ) const

inline

Check if variant Ncbi2na is selected.

Ncbi2na type is defined as 'typedef CNCBI2na TNcbi2na'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 544 of file Seq_data_.hpp.

References CSeq_data_Base::e_Ncbi2na, and CSeq_data_Base::m_choice.

Referenced by s_FixBioseqDeltas(), CValidError_bioseq::x_CountAdjacentNs(), variation_ref::CHgvsParser::x_SeqLiteralToStr(), and variation::CHgvsParser::x_SeqLiteralToStr().

IsNcbi4na()

bool CSeq_data_Base::IsNcbi4na ( void  ) const

inline

Check if variant Ncbi4na is selected.

Ncbi4na type is defined as 'typedef CNCBI4na TNcbi4na'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 564 of file Seq_data_.hpp.

References CSeq_data_Base::e_Ncbi4na, and CSeq_data_Base::m_choice.

Referenced by BOOST_AUTO_TEST_CASE(), s_FixBioseqDeltas(), CValidError_bioseq::x_CountAdjacentNs(), variation_ref::CHgvsParser::x_SeqLiteralToStr(), variation::CHgvsParser::x_SeqLiteralToStr(), and CSequenceDataTester::x_TestSingleNucleotide_Remote().

IsNcbi8aa()

bool CSeq_data_Base::IsNcbi8aa ( void  ) const

inline

Check if variant Ncbi8aa is selected.

Ncbi8aa type is defined as 'typedef CNCBI8aa TNcbi8aa'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 624 of file Seq_data_.hpp.

References CSeq_data_Base::e_Ncbi8aa, and CSeq_data_Base::m_choice.

Referenced by variation_ref::CHgvsParser::x_SeqLiteralToStr(), and variation::CHgvsParser::x_SeqLiteralToStr().

IsNcbi8na()

bool CSeq_data_Base::IsNcbi8na ( void  ) const

inline

Check if variant Ncbi8na is selected.

Ncbi8na type is defined as 'typedef CNCBI8na TNcbi8na'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 584 of file Seq_data_.hpp.

References CSeq_data_Base::e_Ncbi8na, and CSeq_data_Base::m_choice.

Referenced by CValidError_bioseq::x_CountAdjacentNs(), variation_ref::CHgvsParser::x_SeqLiteralToStr(), and variation::CHgvsParser::x_SeqLiteralToStr().

IsNcbieaa()

bool CSeq_data_Base::IsNcbieaa ( void  ) const

inline

Check if variant Ncbieaa is selected.

Ncbieaa type is defined as 'typedef CNCBIeaa TNcbieaa'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 644 of file Seq_data_.hpp.

References CSeq_data_Base::e_Ncbieaa, and CSeq_data_Base::m_choice.

Referenced by BOOST_AUTO_TEST_CASE(), CheckTranslatedBioseq(), GetNcbieaaString(), GetNcbistdSeq(), GetRawSequenceString(), GetSeqLength(), CSeqAnnotFromFasta::PurgeNonAlphaFromSequence(), SetNewProteinSequence(), TrimStopsFromCompleteCDS(), CVectorTrimPanel::x_RetranslateCDS(), variation_ref::CHgvsParser::x_SeqLiteralToStr(), and variation::CHgvsParser::x_SeqLiteralToStr().

IsNcbipaa()

bool CSeq_data_Base::IsNcbipaa ( void  ) const

inline

Check if variant Ncbipaa is selected.

Ncbipaa type is defined as 'typedef CNCBIpaa TNcbipaa'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 664 of file Seq_data_.hpp.

References CSeq_data_Base::e_Ncbipaa, and CSeq_data_Base::m_choice.

Referenced by variation_ref::CHgvsParser::x_SeqLiteralToStr(), and variation::CHgvsParser::x_SeqLiteralToStr().

IsNcbipna()

bool CSeq_data_Base::IsNcbipna ( void  ) const

inline

Check if variant Ncbipna is selected.

Ncbipna type is defined as 'typedef CNCBIpna TNcbipna'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 604 of file Seq_data_.hpp.

References CSeq_data_Base::e_Ncbipna, and CSeq_data_Base::m_choice.

Referenced by variation_ref::CHgvsParser::x_SeqLiteralToStr(), and variation::CHgvsParser::x_SeqLiteralToStr().

IsNcbistdaa()

bool CSeq_data_Base::IsNcbistdaa ( void  ) const

inline

Check if variant Ncbistdaa is selected.

Ncbistdaa type is defined as 'typedef CNCBIstdaa TNcbistdaa'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 684 of file Seq_data_.hpp.

References CSeq_data_Base::e_Ncbistdaa, and CSeq_data_Base::m_choice.

Referenced by FindGeneticCode(), GetNcbieaaString(), GetNcbistdSeq(), CPssm::GetQuerySequenceData(), GetRawSequenceString(), GetSeqLength(), CSeqAnnotFromFasta::PurgeNonAlphaFromSequence(), s_GetQuerySequenceData(), variation_ref::CHgvsParser::x_SeqLiteralToStr(), variation::CHgvsParser::x_SeqLiteralToStr(), and CSequenceDataTester::x_TestSingleProtein_Remote().

IsNum()

bool CSeqdesc_Base::IsNum ( void  ) const

inline

Check if variant Num is selected.

Num type is defined as 'typedef CNumbering TNum'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 1072 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Num, and CSeqdesc_Base::m_choice.

IsOrg()

bool CSeqdesc_Base::IsOrg ( void  ) const

inline

Check if variant Org is selected.

Org type is defined as 'typedef COrg_ref TOrg'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 1046 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Org, and CSeqdesc_Base::m_choice.

Referenced by GetOrg_refOrNull(), CBioseq::GetTaxId(), CFindASN1Dlg::ReplaceInDesc(), s_GetTaxId(), CRemoteUpdater::UpdateOrgFromTaxon(), CWriteDB_Impl::x_BuildDeflinesFromBioseq(), and CNewCleanup_imp::x_MoveSeqdescOrgToSourceOrg().

IsOther()

bool CAnnot_id_Base::IsOther ( void  ) const

inline

Check if variant Other is selected.

Other type is defined as 'typedef CTextannot_id TOther'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 357 of file Annot_id_.hpp.

References CAnnot_id_Base::e_Other, and CAnnot_id_Base::m_choice.

IsPdb()

bool CSeqdesc_Base::IsPdb ( void  ) const

inline

Check if variant Pdb is selected.

Pdb type is defined as 'typedef CPDB_block TPdb'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 1164 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Pdb, and CSeqdesc_Base::m_choice.

IsPir()

bool CSeqdesc_Base::IsPir ( void  ) const

inline

Check if variant Pir is selected.

Pir type is defined as 'typedef CPIR_block TPir'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 1084 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Pir, and CSeqdesc_Base::m_choice.

IsPrf()

bool CSeqdesc_Base::IsPrf ( void  ) const

inline

Check if variant Prf is selected.

Prf type is defined as 'typedef CPRF_block TPrf'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 1158 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Prf, and CSeqdesc_Base::m_choice.

IsPub() [1/2]

bool CAnnotdesc_Base::IsPub ( void  ) const

inline

Check if variant Pub is selected.

Pub type is defined as 'typedef CPubdesc TPub'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 555 of file Annotdesc_.hpp.

References CAnnotdesc_Base::e_Pub, and CAnnotdesc_Base::m_choice.

IsPub() [2/2]

bool CSeqdesc_Base::IsPub ( void  ) const

inline

Check if variant Pub is selected.

Pub type is defined as 'typedef CPubdesc TPub'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 1096 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Pub, and CSeqdesc_Base::m_choice.

Referenced by CDiscrepancyContext::CParseNode::AddDescriptor(), CDiscrepancyVisitorImpl< _Name >::Autofix(), BOOST_AUTO_TEST_CASE(), CPubField::ClearVal(), CReferenceItem::CReferenceItem(), descr_cmp(), GetAuthList(), CReplaceSectionPanel::GetCommand(), CReplaceEntirePubPanel::GetCommand(), CEditObjectSeq_desc::GetEditCommand(), CFlatFileViewContext::GetEditObject(), GetPubTitle(), CPubField::GetRelatedObjects(), CEditPubDlg::GetSelectedPub(), CPubField::GetStatus(), CPubField::GetVal(), CPubField::GetVals(), CSubmissionWizard::ImportTemplate(), IsSeqDescInList(), SPubMatch::operator()(), CFindASN1Dlg::ReplaceInDesc(), s_EmptyAfterRemovingPMID(), s_IsCitSub(), and CFlatGatherer::x_GatherReferencesIdx().

IsReal()

bool CNumbering_Base::IsReal ( void  ) const

inline

Check if variant Real is selected.

Real type is defined as 'typedef CNum_real TReal'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 334 of file Numbering_.hpp.

References CNumbering_Base::e_Real, and CNumbering_Base::m_choice.

IsRef() [1/2]

bool CNumbering_Base::IsRef ( void  ) const

inline

Check if variant Ref is selected.

Ref type is defined as 'typedef CNum_ref TRef'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 328 of file Numbering_.hpp.

References CNumbering_Base::e_Ref, and CNumbering_Base::m_choice.

IsRef() [2/2]

bool CSeq_ext_Base::IsRef ( void  ) const

inline

Check if variant Ref is selected.

Ref type is defined as 'typedef CRef_ext TRef'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 324 of file Seq_ext_.hpp.

References CSeq_ext_Base::e_Ref, and CSeq_ext_Base::m_choice.

Referenced by CModifySeqId::GetCommand(), CValidError_bioseq::GetLocFromSeq(), CValidError_bioseq::ValidateRepr(), and CSeqdesc_CI::x_CheckRef().

IsRegion() [1/2]

bool CAnnotdesc_Base::IsRegion ( void  ) const

inline

Check if variant Region is selected.

Region type is defined as 'typedef CSeq_loc TRegion'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 591 of file Annotdesc_.hpp.

References CAnnotdesc_Base::e_Region, and CAnnotdesc_Base::m_choice.

Referenced by MakeCompartments().

IsRegion() [2/2]

bool CSeqdesc_Base::IsRegion ( void  ) const

inline

Check if variant Region is selected.

Region type is defined as 'typedef string TRegion'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 1102 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Region, and CSeqdesc_Base::m_choice.

Referenced by CFindASN1Dlg::ReplaceInDesc().

IsSeg()

bool CSeq_ext_Base::IsSeg ( void  ) const

inline

Check if variant Seg is selected.

Seg type is defined as 'typedef CSeg_ext TSeg'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 318 of file Seq_ext_.hpp.

References CSeq_ext_Base::e_Seg, and CSeq_ext_Base::m_choice.

Referenced by CMasterContext::CMasterContext(), CModifySeqId::GetCommand(), CValidError_bioseq::GetLocFromSeq(), CValidError_bioseq::ValidateInst(), CValidError_bioseq::ValidateRepr(), CValidError_bioseq::ValidateSegRef(), and CSeqMap::x_DoUpdateSeq_inst().

IsSeq_table()

bool CSeq_annot_Base::C_Data::IsSeq_table ( void  ) const

inline

Check if variant Seq_table is selected.

Seq_table type is defined as 'typedef CSeq_table TSeq_table'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 715 of file Seq_annot_.hpp.

Referenced by CTableAnnotDataSource::AddSeqLoc(), CTableAnnotDataSource::AddSnpSeqLoc(), CTableAnnotDataSource::CreateFeature(), CTableAnnotDataSource::CreateSnpFeature(), CTableAnnotDataSource::CreateSnps(), CTableAnnotDataSource::FindLocations(), CSeq_annot::IsSeq_table(), CSeq_annot_Handle::IsSeq_table(), CTableAnnotDataSource::RemoveSeqLocs(), and CModifySeqId::x_UpdateSeqAnnot().

IsSet() [1/5]

bool CAnnot_descr_Base::IsSet ( void  ) const

inline

Check if a value has been assigned to data member.

Data member is mandatory; its type is defined as 'typedef list< CRef< CAnnotdesc > > Tdata'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 152 of file Annot_descr_.hpp.

References CAnnot_descr_Base::m_set_State.

Referenced by CAutogeneratedExtendedCleanup::ExtendedCleanupSeqAnnotDescr(), CSeq_annot_Finder::Find(), s_GetVcfMetaInfo(), CGvfWriter::WriteHeader(), CFlatGatherer::x_AnnotComments(), CAutogeneratedCleanup::x_BasicCleanupBioseqSet_annot_E_E_desc_ETC(), and CFlatGatherer::x_GetAnnotDescStrucCommentFromBioseqHandle().

IsSet() [2/5]

bool CDelta_ext_Base::IsSet ( void  ) const

inline

Check if a value has been assigned to data member.

Data member is mandatory; its type is defined as 'typedef list< CRef< CDelta_seq > > Tdata'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 152 of file Delta_ext_.hpp.

References CDelta_ext_Base::m_set_State.

Referenced by CModifySeqId::GetCommand(), CAutogeneratedCleanup::x_BasicCleanupDeltaExt(), CValidError_bioseq::x_IsRangeGap(), and CValidError_bioseq::x_ParentAndComponentLocationsDiffer().

IsSet() [3/5]

bool CMap_ext_Base::IsSet ( void  ) const

inline

Check if a value has been assigned to data member.

Data member is mandatory; its type is defined as 'typedef list< CRef< CSeq_feat > > Tdata'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 152 of file Map_ext_.hpp.

References CMap_ext_Base::m_set_State.

Referenced by CBioseqIndex::CBioseqIndex(), CModifySeqId::GetCommand(), CAutogeneratedCleanup::x_BasicCleanupBioseq_inst_inst_ext_ext_map(), and CDeflineGenerator::x_SetFlags().

IsSet() [4/5]

bool CSeg_ext_Base::IsSet ( void  ) const

inline

Check if a value has been assigned to data member.

Data member is mandatory; its type is defined as 'typedef list< CRef< CSeq_loc > > Tdata'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 152 of file Seg_ext_.hpp.

References CSeg_ext_Base::m_set_State.

Referenced by CModifySeqId::GetCommand(), and CAutogeneratedCleanup::x_BasicCleanupBioseqSet_seq_set_E_E_seq_seq_inst_inst_ext_ext_seg_ETC().

IsSet() [5/5]

bool CSeq_descr_Base::IsSet ( void  ) const

inline

Check if a value has been assigned to data member.

Data member is mandatory; its type is defined as 'typedef list< CRef< CSeqdesc > > Tdata'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 154 of file Seq_descr_.hpp.

References CSeq_descr_Base::m_set_State.

Referenced by CCleanup::AddNcbiCleanupObject(), TaxTreeData::addTaxToBioseq(), CDiscrepancyVisitorImpl< _Name >::Autofix(), CSequesterSets::BioseqSetDescriptorPropagateDown(), BioseqSetDescriptorPropagateUp(), CSequesterSets::BioseqSetDescriptorPropagateUp(), seqsubmit_split::NeedToInclude(), CApplyMods::operator()(), CDUpdater::reformatBioseq(), CDUpdater::reformatBioseqByBlastDefline(), s_CheckForSegments(), s_GetDescriptor(), s_GetInfluenzaLabel(), SimplifyBioseqForCD(), CTable2AsnContext::UpdateTaxonFromTable(), CVdbFastaExtractor::Write(), CCleanupHugeAsnReader::x_AddTopLevelDescriptors(), CAutogeneratedCleanup::x_BasicCleanupBioseq_descr(), CAutogeneratedCleanup::x_BasicCleanupBioseqSet_descr_ETC(), CNewCleanup_imp::x_CleanupGenbankBlock(), CAutogeneratedExtendedCleanup::x_ExtendedCleanupSeqdescr(), CSubmissionWizard::x_ExtractDescriptors(), CNewCleanup_imp::x_FixStructuredCommentKeywords(), CDumpASNIndex::x_GetTaxId(), CNewCleanup_imp::x_RemoveUnseenTitles(), seqsubmit_split::CSeqSubSplitter::xFlattenSeqEntry(), and seqsubmit_split::CSeqSubSplitter::xMergeSeqDescr().

IsSetA()

bool CNum_real_Base::IsSetA ( void  ) const

inline

from an integer system used by Bioseq Check if a value has been assigned to A data member.

Data member A is mandatory; its type is defined as 'typedef double TA'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 242 of file Num_real_.hpp.

References CNum_real_Base::m_set_State.

Referenced by CNum_real_Base::CanGetA(), and CNum_real_Base::SetA().

IsSetAccession()

bool CTextannot_id_Base::IsSetAccession ( void  ) const

inline

Check if a value has been assigned to Accession data member.

Data member Accession is optional; its type is defined as 'typedef string TAccession'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 334 of file Textannot_id_.hpp.

References CTextannot_id_Base::m_set_State.

Referenced by CTextannot_id_Base::CanGetAccession(), CSeq_annot_SplitInfo::GetName(), CTextannot_id_Base::SetAccession(), and CSeq_annot_Info::x_UpdateName().

IsSetAlign_group()

bool CPubdesc_Base::IsSetAlign_group ( void  ) const

inline

this seq aligned with others in paper Check if a value has been assigned to Align_group data member.

Data member Align_group is optional; its type is defined as 'typedef int TAlign_group'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 926 of file Pubdesc_.hpp.

References CPubdesc_Base::m_set_State.

Referenced by CPubdesc_Base::CanGetAlign_group(), and CPubdesc_Base::SetAlign_group().

IsSetAlign_type()

bool CAlign_def_Base::IsSetAlign_type ( void  ) const

inline

Check if a value has been assigned to Align_type data member.

Data member Align_type is mandatory; its type is defined as 'typedef int TAlign_type'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 208 of file Align_def_.hpp.

References CAlign_def_Base::m_set_State.

Referenced by CAlign_def_Base::CanGetAlign_type(), and CAlign_def_Base::SetAlign_type().

IsSetAligns()

bool CNum_ref_Base::IsSetAligns ( void  ) const

inline

Check if a value has been assigned to Aligns data member.

Data member Aligns is optional; its type is defined as 'typedef CSeq_align TAligns'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 256 of file Num_ref_.hpp.

References CNum_ref_Base::m_Aligns.

Referenced by CNum_ref_Base::CanGetAligns(), and CAutogeneratedCleanup::x_BasicCleanupNumRef().

IsSetAnnot()

bool CBioseq_Base::IsSetAnnot ( void  ) const

inline

Check if a value has been assigned to Annot data member.

Data member Annot is optional; its type is defined as 'typedef list< CRef< CSeq_annot > > TAnnot'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 354 of file Bioseq_.hpp.

References CBioseq_Base::m_set_State.

Referenced by AddFeat(), AddFeatureToBioseq(), CReadBlastApp::addLocation(), CFeatGapInfo::AdjustProteinSeq(), CSourceModParser::ApplyAllMods(), CDiscrepancyContext::AutofixBioseq(), CAutogeneratedCleanup::BasicCleanupBioseq(), ChangeId(), ChangeNucId(), CkCdRegion(), EmblAscii(), CAutogeneratedExtendedCleanup::ExtendedCleanupBioseq(), FindGene(), fta_fix_labels(), GenBankAsciiOrig(), GetEmblDescr(), GetMMDBId(), CCleanup::MoveFeatToProtein(), CFeatureTableReader::MoveRegionsToProteins(), CDiscrepancyContext::PopulateBioseq(), CNewCleanup_imp::ProtSeqBC(), CFeatureTableReader::RemoveEmptyFtable(), CReadBlastApp::RemoveProblems(), RevComp(), s_GetBioseqAnnot(), s_GetQualityString(), s_HasUnprocessedCdregions(), s_RemoveAnnotsFromEntry(), s_UpdateFeatureIds(), CBioseq_Info::sx_ShallowCopy(), CMytestApplication::TestFeatureGeneOverlap(), CdBlaster::truncateBioseq(), CValidError_graph::ValidateGraphsOnBioseq(), objects::VisitAllFeatures(), CQualScoreWriter::Write(), CAsnCacheTestApplication::x_FindAnnotated(), CFeatModApply::x_FindSeqfeat(), CSeqMasterIndex::x_InitSeqs(), CNewCleanup_imp::x_IsCommentRedundantWithEC(), CNewCleanup_imp::x_MergeAdjacentFeatureTables(), CNewCleanup_imp::x_MoveCdregionXrefsToProt(), CNewCleanup_imp::x_RemoveEmptyFeatureTables(), CNewCleanup_imp::x_SeqFeatCDSGBQualBC(), CBioseq_Info::x_SetObject(), CSplitDataLoader::x_SplitSeq(), CQualScoreWriter::x_WriteHeader(), and XMLAscii().

IsSetAscending()

bool CNum_cont_Base::IsSetAscending ( void  ) const

inline

ascending numbers? Check if a value has been assigned to Ascending data member.

Data member Ascending is optional with default true; its type is defined as 'typedef bool TAscending'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 347 of file Num_cont_.hpp.

References CNum_cont_Base::m_set_State.

Referenced by CNum_cont_Base::SetAscending().

IsSetAssembly()

bool CSeq_hist_Base::IsSetAssembly ( void  ) const

inline

how was this assembled? Check if a value has been assigned to Assembly data member.

Data member Assembly is optional; its type is defined as 'typedef list< CRef< CSeq_align > > TAssembly'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 500 of file Seq_hist_.hpp.

References CSeq_hist_Base::m_set_State.

Referenced by CFeatureGenerator::SImplementation::ConvertMixedAlignToAnnot(), CBlobSplitterImpl::CopyHist(), CSeq_hist_SplitInfo::CSeq_hist_SplitInfo(), CRemoveSeqHistAssembly::GetCommand(), CModifySeqId::GetCommand(), CCommentItem::GetStringForTPA(), CValidError_bioseq::IsHistAssemblyMissing(), CSplitCacheApp::TestSplitBlob(), CCreateSeqHistForTpa::ValidateAlignments(), CAutogeneratedCleanup::x_BasicCleanupSeqHist(), and CSGSwitchPointJob::x_Execute().

IsSetB()

bool CNum_real_Base::IsSetB ( void  ) const

inline

position = (a * int_position) + b Check if a value has been assigned to B data member.

Data member B is mandatory; its type is defined as 'typedef double TB'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 289 of file Num_real_.hpp.

References CNum_real_Base::m_set_State.

Referenced by CNum_real_Base::CanGetB(), and CNum_real_Base::SetB().

IsSetBiomol()

bool CMolInfo_Base::IsSetBiomol ( void  ) const

inline

Check if a value has been assigned to Biomol data member.

Data member Biomol is optional with default eBiomol_unknown; its type is defined as 'typedef int TBiomol'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 422 of file MolInfo_.hpp.

References CMolInfo_Base::m_set_State.

Referenced by AdjustProteinMolInfoToMatchCDS(), CMolInfoEditDlg::ApplyToMolInfo(), CFastaReaderEx::AssembleSeq(), FinalCleanup(), CWriteUtil::GetBiomol(), CMolInfo::GetLabel(), CValidError_feat::GetTSACDSOnMinusStrandErrors(), CMolInfoField::GetVal(), IsEmptyMolInfo(), CValidError_bioseq::IsMrna(), CEditingActionMolInfoMolecule::IsSetValue(), CMolInfoSubpanel::OnSelectButton(), CAdjustForConsensusSpliceSite::s_IsBioseqGood_AdjustEnds(), s_UpdateGlobalInfo(), CMolInfo_Base::SetBiomol(), CMolInfoSubpanel::SetClusters(), CReadInSkipObjectHook< Object >::SkipObject(), CValidError_imp::ValidateBioSourceForSeq(), CValidError_desc::ValidateMolInfo(), CValidError_bioseq::ValidateMolInfoContext(), CSubmissionWizard::x_ApplyMolinfoToRecords(), CNewCleanup_imp::x_ExtendSingleGeneOnMrna(), CNewCleanup_imp::x_FixUnsetMolFromBiomol(), CAutoDef::x_GetOneNonFeatureClause(), CPrimeCacheApplication::x_Process_Fasta(), CAutoDefFeatureClause::x_SetBiomol(), CValidError_bioseq::x_ValidateAbuttingRNA(), CValidError_bioseq::x_ValidateAbuttingUTR(), CValidError_bioseq::x_ValidateCompletness(), CValidError_bioseq::x_ValidateMolInfoForBioSource(), CGffFeatureContext::xAssignSequenceIsGenomicRecord(), and CFeatureTableReader::xConvertSeqIntoSeqSet().

IsSetComment()

bool CPubdesc_Base::IsSetComment ( void  ) const

inline

any comment on this pub in context Check if a value has been assigned to Comment data member.

Data member Comment is optional; its type is defined as 'typedef string TComment'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 973 of file Pubdesc_.hpp.

References CPubdesc_Base::m_set_State.

Referenced by CPubdesc_Base::CanGetComment(), CCleanupPub::CleanPubdesc(), CCleanup::ConvertPubFeatsToPubDescs(), fta_strip_er_remarks(), CCleanup::OkToPromoteNpPub(), CFindASN1Dlg::ReplaceInPubdesc(), CPubdesc_Base::SetComment(), CRemarksAndSerialNumberPanel::TransferDataToWindow(), CValidError_imp::ValidatePubdesc(), CAutogeneratedCleanup::x_BasicCleanupSeqFeat_data_data_pub_ETC(), CAutogeneratedCleanup::x_BasicCleanupSeqFeatXrefPub(), CAutogeneratedExtendedCleanup::x_ExtendedCleanupPubDesc(), and CReferenceItem::x_GatherRemark().

IsSetCompleteness()

bool CMolInfo_Base::IsSetCompleteness ( void  ) const

inline

Check if a value has been assigned to Completeness data member.

Data member Completeness is optional with default eCompleteness_unknown; its type is defined as 'typedef int TCompleteness'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 569 of file MolInfo_.hpp.

References CMolInfo_Base::m_set_State.

Referenced by CCleanup::AddPartialToProteinTitle(), AdjustProteinMolInfoToMatchCDS(), CMolInfoEditDlg::ApplyToMolInfo(), CMolInfo::GetLabel(), CMolInfoField::GetVal(), IsEmptyMolInfo(), CValidError_bioseq::IsPartial(), variation::IsRightPartial(), CEditingActionMolInfoCompletedness::IsSetValue(), s_IsBioseqPartial(), SeqLocPartialCheck(), CMolInfo_Base::SetCompleteness(), SetMolinfoCompleteness(), SetMolInfoCompleteness(), CReadInSkipObjectHook< Object >::SkipObject(), CValidError_imp::ValidateBioSourceForSeq(), CValidError_bioseq::ValidateMolInfoContext(), CMacroFunction_AutodefComplete::x_IsComplete(), CPrimeCacheApplication::x_Process_Fasta(), CValidError_bioseq::x_ValidateCompletness(), and CProtValidator::x_ValidateMolinfoPartials().

IsSetData()

bool CSeq_annot_Base::IsSetData ( void  ) const

inline

Check if a value has been assigned to Data data member.

Data member Data is mandatory; its type is defined as 'typedef C_Data TData'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 861 of file Seq_annot_.hpp.

References CSeq_annot_Base::m_Data, and CRef< C, Locker >::NotEmpty().

Referenced by CTableAnnotDataSource::AddSeqLoc(), CTableAnnotDataSource::AddSnpSeqLoc(), subfuse::CSubmissionCollector::AdjustLocalIds(), CRemoveSeqAnnot::ApplyToSeqAnot(), CAutogeneratedCleanup::BasicCleanupSeqAnnot(), Convert_Seq_annot_Seq_align(), Convert_Seq_annot_Seq_feat(), Convert_Seq_annot_Seq_graph(), CVariationUtilities::CorrectRefAllele(), CTableAnnotDataSource::CreateFeature(), CTableAnnotDataSource::CreateSnpFeature(), CTableAnnotDataSource::CreateSnps(), CTableAnnotDataSource::FindLocations(), CVDBGraphSeqIterator::GetAnnot(), AnnotObjTrait< CSeq_feat >::GetCont(), AnnotObjTrait< CSeq_align >::GetCont(), AnnotObjTrait< CSeq_graph >::GetCont(), CDesktopAnnotItem::GetDescription(), CAnnotationLoader::GetNextAnnot(), CSeq_annot::IsAlign(), CSeq_annot::IsFtable(), CSeq_annot::IsGraph(), CSeq_annot::IsIds(), CSeq_annot::IsLocs(), CSeq_annot::IsSeq_table(), CTableAnnotDataSource::RemoveSeqLocs(), s_GetSeqAnnotChoiceMask(), s_LoadSeqAnnot(), s_SetSearchParam(), CRemoveSeqFromAlignDlg::SearchSeq_entry(), CNewCleanup_imp::ShouldRemoveAnnot(), SrchCdRegion(), CMytestApplication::TestFeatureGeneOverlap(), CUCSCRegionWriter::WriteAnnot(), CAutogeneratedCleanup::x_BasicCleanupSeqSubmit_data_annots_E(), CSequenceEditingEventHandler::x_CacheSelectedLocations(), CCreateGeneModelTask::x_GetCommand(), CVariationNormalization_base< T >::x_Shift(), and CModifySeqId::x_UpdateSeqAnnot().

IsSetDate()

bool CSeq_hist_rec_Base::IsSetDate ( void  ) const

inline

Check if a value has been assigned to Date data member.

Data member Date is optional; its type is defined as 'typedef CDate TDate'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 197 of file Seq_hist_rec_.hpp.

References CSeq_hist_rec_Base::m_Date.

Referenced by CSeq_hist_rec_Base::CanGetDate(), CEditHistory::CreateControls(), s_CreateHistCommentString(), CValidError_bioseq::ValidateHistory(), CAutogeneratedCleanup::x_BasicCleanupSeqHistRec(), and x_FindLatestSequence().

IsSetDb()

bool CSeq_annot_Base::IsSetDb ( void  ) const

inline

Check if a value has been assigned to Db data member.

Data member Db is optional; its type is defined as 'typedef int TDb'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 746 of file Seq_annot_.hpp.

References CSeq_annot_Base::m_set_State.

Referenced by CSeq_annot_Base::CanGetDb(), CBlobSplitterImpl::MakeSeq_annot(), s_IsMergeableFeatureTable(), CSeq_annot_Handle::Seq_annot_IsSetDb(), CSeq_annot_Base::SetDb(), and CAnnotGetter::x_GetCompleteSeqAnnot().

IsSetDeleted()

bool CSeq_hist_Base::IsSetDeleted ( void  ) const

inline

Check if a value has been assigned to Deleted data member.

Data member Deleted is optional; its type is defined as 'typedef C_Deleted TDeleted'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 567 of file Seq_hist_.hpp.

References CSeq_hist_Base::m_Deleted.

Referenced by CSeq_hist_Base::CanGetDeleted(), CBlobSplitterImpl::CopySequence(), CEditHistory::CreateControls(), CRemoveSeqHistAssembly::GetCommand(), and CAutogeneratedCleanup::x_BasicCleanupSeqHist().

IsSetDesc()

bool CSeq_annot_Base::IsSetDesc ( void  ) const

inline

used only for stand alone Seq-annots Check if a value has been assigned to Desc data member.

Data member Desc is optional; its type is defined as 'typedef CAnnot_descr TDesc'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 840 of file Seq_annot_.hpp.

References CSeq_annot_Base::m_Desc.

Referenced by CBedTrackRecord::Assign(), CAutogeneratedCleanup::BasicCleanupSeqAnnot(), CSeq_annot_Base::CanGetDesc(), CAutogeneratedExtendedCleanup::ExtendedCleanupSeqAnnot(), CSeq_annot_Finder::Find(), CSeqUtils::GetAnnotUserField(), CBamUtils::GetCoverageGraphInfo(), CWriteUtil::GetDescriptor(), CAnnotObject_Info::GetLocsTypes(), CAnnotObject_Info::GetMaps(), CSeq_annot_SplitInfo::GetName(), CReadUtil::GetTrackValue(), CBlobSplitterImpl::MakeSeq_annot(), s_GetAnnotContent(), s_GetAnnotName(), s_GetVcfMetaInfo(), s_IsMergeableFeatureTable(), s_RetainEmptyAnnot(), s_SetSearchParam(), CSeq_annot_Handle::Seq_annot_IsSetDesc(), CBamUtils::UpdateCoverageGraphInfo(), CValidError_annot::ValidateSeqAnnot(), CGvfWriter::WriteHeader(), CAutogeneratedCleanup::x_BasicCleanupSeqSubmit_data_annots_E(), CAnnotGetter::x_GetCompleteSeqAnnot(), CSeq_annot_Info::x_UpdateName(), CVcfWriter::x_WriteMetaCreateNew(), and CVcfReader::xAssignVcfMeta().

IsSetDescr()

bool CBioseq_Base::IsSetDescr ( void  ) const

inline

descriptors Check if a value has been assigned to Descr data member.

Data member Descr is optional; its type is defined as 'typedef CSeq_descr TDescr'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 303 of file Bioseq_.hpp.

References CBioseq_Base::m_Descr.

Referenced by AddCommentToBioseq(), AddLocalIdUserObjects(), CWGSDb_Impl::AddMasterDescr(), CCleanup::AddMissingMolInfo(), CCleanup::AddPartialToProteinTitle(), CNewCleanup_imp::AddProteinTitles(), AddSeqdescToBioseq(), AddTitle(), CFeatGapInfo::AdjustProteinSeq(), CAutogeneratedCleanup::BasicCleanupBioseq(), BOOST_AUTO_TEST_CASE(), CBioseq_Base::CanGetDescr(), CheckHost(), CheckLocalId(), CollectDescriptors(), CompareDescrFeatSources(), CBlobSplitterImpl::CopySkeleton(), CChangeSeqdescTitleCommand::Execute(), CAutogeneratedExtendedCleanup::ExtendedCleanupBioseq(), extractBioseqInfo(), FindUnverified(), fta_remove_cleanup_user_object(), CDUpdater::GetBlastDefline(), AlignmentCollection::GetDefline(), CAlignFormatUtil::GetSeqDescrString(), GetSpeciesFromBioseq(), CBioseq::GetTaxId(), TaxClient::GetTaxIDFromBioseq(), GetTaxIdInBioseq(), HasRepairedIDs(), CCdFromFasta::ImportAlignmentData(), IsUnverifiedContaminant(), IsUnverifiedFeature(), IsUnverifiedMisassembled(), IsUnverifiedOrganism(), CValidError_bioseq::IsWGS(), MoveBiomolToTop(), CApplyMods::operator()(), PrintASN1(), PropogateSuppliedLineage(), CNewCleanup_imp::ProtSeqBC(), CNewCleanup_imp::RemoveBadProteinTitle(), CDUpdater::RemoveBlastDefline(), RemoveUserObjectType(), s_AddSeqTitleToPssm(), s_AutoDefUserObjectFromBioseq(), s_GetFastaDefline(), s_GetQualityString(), s_GetSequenceId(), s_HasDescriptorOfType(), s_HasWGSTech(), CSequenceEditingEventHandler::SaveDescriptors(), CValidErrorFormat::SetSuppressionRules(), SetTargetedLocusName(), ShowOrgRef(), CBioseq_Info::sx_ShallowCopy(), CChangeSeqdescTitleCommand::Unexecute(), CTable2AsnContext::UpdateTaxonFromTable(), CValidError_bioseq::ValidateBioseq(), CValidError_bioseqset::ValidateBioseqSet(), CValidError_bioseq::ValidateSeqGap(), CVdbFastaExtractor::Write(), CNewCleanup_imp::x_CleanupGenbankBlock(), CNewCleanup_imp::x_ClearEmptyDescr(), CSubmissionWizard::x_ExtractDescriptorsFromSeqEntry(), CDumpASNIndex::x_GetTaxId(), CSeqMasterIndex::x_InitSeqs(), CMakeProfileDBApp::x_MakeVol(), CNewCleanup_imp::x_RemovePub(), CNewCleanup_imp::x_RescueMolInfo(), CNewCleanup_imp::x_SetPartialsForProtein(), CSplitDataLoader::x_SplitSeq(), and CMakeProfileDBApp::x_UpdateCobalt().

IsSetExt()

bool CSeq_inst_Base::IsSetExt ( void  ) const

inline

extensions for special types Check if a value has been assigned to Ext data member.

Data member Ext is optional; its type is defined as 'typedef CSeq_ext TExt'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 826 of file Seq_inst_.hpp.

References CSeq_inst_Base::m_Ext.

Referenced by CGapsEditor::AddBioseqAsLiteral(), AddLiteral(), CForeignContaminationScreenReportReader::AnnotateOrRemove(), CConvertGapsBySize::apply(), CExpandGaps::apply(), CConvertSelectedGaps::apply_impl(), CEditSelectedGaps::apply_impl(), CCombineAdjacentGaps::apply_impl(), AssemblyGapsToDelta(), CBlobSplitterImpl::AttachToSkeleton(), BOOST_AUTO_TEST_CASE(), CSeq_inst_Base::CanGetExt(), CheckTranslatedBioseq(), CSeq_inst::ConvertDeltaToRaw(), CGapsEditor::ConvertNs2Gaps(), CBlobSplitterImpl::CopySequence(), CBlobSplitterImpl::CopySkeleton(), CSeqMap::CSeqMap(), DeltaBioseqPack(), CRawSeqToDeltaByN::DeltaSeqToRaw(), ExtractExtraIds(), fta_check_con_for_wgs(), fta_create_wgs_seqid(), CAddLinkageToGaps::GetCommand(), CModifySeqId::GetCommand(), CBlobSplitterImpl::GetLength(), CValidError_bioseq::GetLocFromSeq(), CConvertBadCdsAndRnaToMiscFeat::IsExtendableLeft(), IsExtendableLeft(), CConvertBadCdsAndRnaToMiscFeat::IsExtendableRight(), IsExtendableRight(), CValidError_bioseq::IsSelfReferential(), NormalizeUnknownLengthGaps(), CBioseq::PackAsDeltaSeq(), CFastaReaderEx::ReadDeltaFasta(), ReverseComplement(), CAsnCacheTestApplication::Run(), s_HasRawSequence(), s_IsConWithGaps(), CUpdateSeq_Input::s_IsDeltaWithFarPointers(), CUpdateSeq_Input::s_IsDeltaWithNoGaps(), Split_Qscore_SeqGraph_By_DeltaSeq(), CBioseq_Info::sx_ShallowCopy(), CValidError_bioseq::ValidateCompleteGenome(), CValidError_bioseq::ValidateDelta(), CValidError_bioseq::ValidateInst(), CValidError_bioseq::ValidateRepr(), CValidError_bioseq::ValidateSegRef(), CAutogeneratedCleanup::x_BasicCleanupBioseq_inst(), CBioseq_Info::x_CalcBioseqLength(), CFeatureGenerator::SImplementation::x_CollectMrnaSequence(), CSeqMap::x_DoUpdateSeq_inst(), CAutogeneratedExtendedCleanup::x_ExtendedCleanupBioseq_inst(), CPrimeCacheApplication::x_ExtractDelta(), CSingleFeatValidator::x_FindStartOfGap(), CValidError_bioseq::x_HasGap(), CValidError_bioseq::x_IsRangeGap(), CValidError_bioseq::x_ParentAndComponentLocationsDiffer(), CForeignContaminationScreenReportReader::xCheckLen(), and CForeignContaminationScreenReportReader::xTrimExt().

IsSetFig()

bool CPubdesc_Base::IsSetFig ( void  ) const

inline

figure in paper Check if a value has been assigned to Fig data member.

Data member Fig is optional; its type is defined as 'typedef string TFig'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 670 of file Pubdesc_.hpp.

References CPubdesc_Base::m_set_State.

Referenced by CPubdesc_Base::CanGetFig(), CCleanup::OkToPromoteNpPub(), s_CombineRefs(), CPubdesc_Base::SetFig(), CReferenceItem::x_GatherRemark(), and CNewCleanup_imp::x_IsPubContentBad().

IsSetFuzz() [1/2]

bool CSeq_inst_Base::IsSetFuzz ( void  ) const

inline

length uncertainty Check if a value has been assigned to Fuzz data member.

Data member Fuzz is optional; its type is defined as 'typedef CInt_fuzz TFuzz'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 687 of file Seq_inst_.hpp.

References CSeq_inst_Base::m_Fuzz.

Referenced by CSeq_inst_Base::CanGetFuzz(), CBlobSplitterImpl::CopySequence(), CBioseq_Info::sx_ShallowCopy(), and CValidError_bioseq::ValidateRawConst().

IsSetFuzz() [2/2]

bool CSeq_literal_Base::IsSetFuzz ( void  ) const

inline

could be unsure Check if a value has been assigned to Fuzz data member.

Data member Fuzz is optional; its type is defined as 'typedef CInt_fuzz TFuzz'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 289 of file Seq_literal_.hpp.

References CSeq_literal_Base::m_Fuzz.

Referenced by CConvertGapsBySize::apply(), CCombineAdjacentGaps::apply_impl(), CSeq_literal_Base::CanGetFuzz(), CBlobSplitterImpl::CopySequence(), CSeq_literal::GetBridgeability(), CExpandGaps::IsSkipGap(), CValidError_bioseq::ValidateDelta(), and CContigItem::x_GatherInfo().

IsSetGbmoltype()

bool CMolInfo_Base::IsSetGbmoltype ( void  ) const

inline

identifies particular ncRNA Check if a value has been assigned to Gbmoltype data member.

Data member Gbmoltype is optional; its type is defined as 'typedef string TGbmoltype'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 619 of file MolInfo_.hpp.

References CMolInfo_Base::m_set_State.

Referenced by CMolInfo_Base::CanGetGbmoltype(), IsEmptyMolInfo(), and CMolInfo_Base::SetGbmoltype().

IsSetHas_zero()

bool CNum_cont_Base::IsSetHas_zero ( void  ) const

inline

0 used? Check if a value has been assigned to Has_zero data member.

Data member Has_zero is optional with default false; its type is defined as 'typedef bool THas_zero'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 297 of file Num_cont_.hpp.

References CNum_cont_Base::m_set_State.

Referenced by CNum_cont_Base::SetHas_zero().

IsSetHist()

bool CSeq_inst_Base::IsSetHist ( void  ) const

inline

sequence history Check if a value has been assigned to Hist data member.

Data member Hist is optional; its type is defined as 'typedef CSeq_hist THist'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 847 of file Seq_inst_.hpp.

References CSeq_inst_Base::m_Hist.

Referenced by CLoadSecondaryAccessions::apply(), CSourceModParser::ApplyAllMods(), BOOST_AUTO_TEST_CASE(), CSeq_inst_Base::CanGetHist(), CFeatureGenerator::SImplementation::ConvertMixedAlignToAnnot(), CBlobSplitterImpl::CopySequence(), CAddSecondary::GetCommand(), CRemoveSeqHistAssembly::GetCommand(), CModifySeqId::GetCommand(), CValidError_bioseq::IsHistAssemblyMissing(), CBioseq_Info::sx_ShallowCopy(), CValidError_bioseq::ValidateHistory(), CAutogeneratedCleanup::x_BasicCleanupBioseq_inst(), CSGSwitchPointJob::x_Execute(), and x_FindLatestSequence().

IsSetId() [1/2]

bool CBioseq_Base::IsSetId ( void  ) const

inline

equivalent identifiers Check if a value has been assigned to Id data member.

Data member Id is mandatory; its type is defined as 'typedef list< CRef< CSeq_id > > TId'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 278 of file Bioseq_.hpp.

References CBioseq_Base::m_set_State.

Referenced by CGBProjectHelper::AddProjectItemsFromRID(), AllowOrphanedProtein(), CTrimN::apply(), CAutogeneratedCleanup::BasicCleanupBioseq(), CRemoveSequencesDlg::CollectLabels(), CRBSubpanel::CollectLabels(), CRemoveSequencesDlg::CollectLabelsAll(), CRBSubpanel::CollectLabelsAll(), seqsubmit_split::SIdCompare::compare_seq(), CSeqIdField::GetVal(), CFileIDField::GetVal(), CGeneralIDField::GetVal(), CLocalIDField::GetVals(), HasRepairedIDs(), CLocalIDField::IsEmpty(), CValidError_bioseq::IsMaster(), CDiscrepancyContext::IsRefseq(), CValidError_bioseq::IsTSAAccession(), CValidError_bioseq::IsWGSAccession(), CEditingActionDescLocalId::Modify(), CFileSubpanel::OnSelectButton(), CNewCleanup_imp::ProtSeqBC(), QSbuf_To_Single_Qscore_SeqGraph(), s_GetMatchingSequence(), s_HasUnprocessedCdregions(), s_ReportUndefinedSpeciesId(), CLengthSubpanel::SetClusters(), CFileSubpanel::SetClusters(), CBioseq_Info::sx_ShallowCopy(), CMacroFunction_TrimTerminalNs::TheFunction(), TranslateCDSCommand(), CValidError_bioseq::ValidateBioseqContext(), CValidError_annot::ValidateSeqAnnotContext(), CValidError_bioseq::ValidateSeqIds(), CEditObjectSeq_feat::x_HandleCdsProduct(), x_IsEmblOrDdbjOnSet(), CFeatureItem::x_SeqIdWriteForTable(), CBioseq_Info::x_SetObject(), CModifySeqId::x_UpdateBioseq(), and CRemoveSeqId::x_UpdateBioseq().

IsSetId() [2/2]

bool CSeq_annot_Base::IsSetId ( void  ) const

inline

Check if a value has been assigned to Id data member.

Data member Id is optional; its type is defined as 'typedef list< CRef< CAnnot_id > > TId'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 721 of file Seq_annot_.hpp.

References CSeq_annot_Base::m_set_State.

Referenced by CSeq_annot_SplitInfo::GetName(), CBlobSplitterImpl::MakeSeq_annot(), s_GetAnnotId(), s_IsMergeableFeatureTable(), CSeq_annot_Handle::Seq_annot_IsSetId(), CAnnotGetter::x_GetCompleteSeqAnnot(), and CSeq_annot_Info::x_UpdateName().

IsSetIds() [1/2]

bool CAlign_def_Base::IsSetIds ( void  ) const

inline

used for the one ref seqid for now Check if a value has been assigned to Ids data member.

Data member Ids is optional; its type is defined as 'typedef list< CRef< CSeq_id > > TIds'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 255 of file Align_def_.hpp.

References CAlign_def_Base::m_set_State.

Referenced by CAutogeneratedCleanup::x_BasicCleanupBioseqSet_annot_E_E_desc_desc_E_E_align_ETC().

IsSetIds() [2/2]

bool CSeq_hist_rec_Base::IsSetIds ( void  ) const

inline

Check if a value has been assigned to Ids data member.

Data member Ids is mandatory; its type is defined as 'typedef list< CRef< CSeq_id > > TIds'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 218 of file Seq_hist_rec_.hpp.

References CSeq_hist_rec_Base::m_set_State.

Referenced by CLoadSecondaryAccessions::apply(), CEditHistory::CreateControls(), CAddSecondary::GetCommand(), CModifySeqId::GetCommand(), and CAutogeneratedCleanup::x_BasicCleanupSeqHistRec().

IsSetInst()

bool CBioseq_Base::IsSetInst ( void  ) const

inline

the sequence data Check if a value has been assigned to Inst data member.

Data member Inst is mandatory; its type is defined as 'typedef CSeq_inst TInst'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 324 of file Bioseq_.hpp.

References CBioseq_Base::m_Inst.

Referenced by CCleanup::AddMissingMolInfo(), CCleanup::AddPartialToProteinTitle(), CForeignContaminationScreenReportReader::AnnotateOrRemove(), CLoadSecondaryAccessions::apply(), CClearKeywords::ApplyToCSeq_entry(), CMolInfoEditDlg::ApplyToInst(), CMolInfoEditDlg::ApplyToMolInfo(), CAutogeneratedCleanup::BasicCleanupBioseq(), BOOST_AUTO_TEST_CASE(), CSeqTranslator::ChangeDeltaProteinToRawProtein(), CFeatureTableReader::ChangeDeltaProteinToRawProtein(), CSequenceEditingEventHandler::ChangeToGenomicDna(), CFastaReader::CheckDataLine(), seqsubmit_split::SLongestFirstCompare::compare_seq(), seqsubmit_split::SShortestFirstCompare::compare_seq(), CFeatureGenerator::SImplementation::ConvertMixedAlignToAnnot(), CGapsEditor::ConvertNs2Gaps(), CGapsEditor::CreateGap(), CNewCleanup_imp::CreateMissingMolInfo(), CMolInfoEditDlg::CreateNewMolInfo(), CAutogeneratedExtendedCleanup::ExtendedCleanupBioseq(), CNewCleanup_imp::FixUnsetMolFromBiomol(), CValidError_bioseq::GapByGapInst(), CAddSecondary::GetCommand(), CRemoveSeqHistAssembly::GetCommand(), CModifySeqId::GetCommand(), GetRetranslateCDSCommand(), GetTitle(), CDeflineProcess::IndexedProcess(), CConvertBadCdsAndRnaToMiscFeat::IsExtendableLeft(), IsExtendableLeft(), CConvertBadCdsAndRnaToMiscFeat::IsExtendableRight(), IsExtendableRight(), CValidError_bioseq::IsMaster(), CValidError_bioseq::IsSelfReferential(), CMolInfoSubpanel::OnSelectButton(), CBlastFormat::PrintReport(), CNewCleanup_imp::ProtSeqBC(), CFastaReaderEx::ReadDeltaFasta(), CNewCleanup_imp::RemoveBadProteinTitle(), CNewCleanup_imp::ResynchPeptidePartials(), RetranslateCDS(), RevComp(), s_IncrementSeqCount(), s_IsConWithGaps(), CUpdateSeq_Input::s_IsDeltaWithFarPointers(), CUpdateSeq_Input::s_IsDeltaWithNoGaps(), s_ReplaceAllMolinfo(), s_WillReportTerminalGap(), CFlatfileProcess::SeqEntryProcess(), CGeneOverlapProcess::SeqEntryProcess(), CGeneFeatTreeProcess::SeqEntryProcess(), CMolInfoSubpanel::SetClusters(), CBioseq_Info::sx_ShallowCopy(), CDeflineProcess::UnindexedProcess(), CValidError_bioseq::ValidateCompleteGenome(), CValidError_bioseq::ValidateDeltaLoc(), CValidError_bioseq::ValidateInst(), CValidError_bioseq::ValidateMolInfoContext(), CValidError_bioseq::ValidateNsAndGaps(), CVdbFastaExtractor::Write(), CAlignFormatUtil::x_AcknowledgeBlastSequence(), CSGSwitchPointJob::x_Execute(), CNewCleanup_imp::x_ExtendProteinFeatureOnProteinSeq(), CNewCleanup_imp::x_ExtendSingleGeneOnMrna(), CEditObjectSeq_feat::x_HandleCdsProduct(), CFastaReader::x_NucOrProt(), CNewCleanup_imp::x_RemoveSingleStrand(), CValidError_bioseq::x_ValidateCompletness(), CForeignContaminationScreenReportReader::xCheckLen(), CFeatureTableReader::xConvertSeqIntoSeqSet(), and CFeatureTableReader::xMergeCDSFeatures_impl().

IsSetLength() [1/2]

bool CSeq_inst_Base::IsSetLength ( void  ) const

inline

length of sequence in residues Check if a value has been assigned to Length data member.

Data member Length is optional; its type is defined as 'typedef TSeqPos TLength'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 640 of file Seq_inst_.hpp.

References CSeq_inst_Base::m_set_State.

Referenced by AppendBioseqLabel(), CConvertSelectedGaps::apply_impl(), CEditSelectedGaps::apply_impl(), CCombineAdjacentGaps::apply_impl(), CSeq_inst_Base::CanGetLength(), CValidError_bioseq::CheckSourceDescriptor(), seqsubmit_split::SLongestFirstCompare::compare_seq(), seqsubmit_split::SShortestFirstCompare::compare_seq(), CSeqMap::CSeqMap(), CBlobSplitterImpl::GetLength(), GetSeqLength(), CBioseq::IsSetLength(), PatchTargetSequence(), s_WillReportTerminalGap(), CSeq_inst_Base::SetLength(), CBioseq_Info::sx_ShallowCopy(), CValidError_bioseq::ValidateNsAndGaps(), CValidError_bioseq::ValidateRawConst(), CValidError_bioseq::ValidateSegRef(), CValidError_bioseq::ValidateSeqFeatContext(), CValidError_bioseq::ValidateSeqLen(), CValidError_bioseq::x_BadMetazoanMitochondrialLength(), CASN1InputSourceOMF::x_ReadOneSeq(), and CSplitDataLoader::x_SplitSeqData().

IsSetLength() [2/2]

bool CSeq_literal_Base::IsSetLength ( void  ) const

inline

must give a length in residues Check if a value has been assigned to Length data member.

Data member Length is mandatory; its type is defined as 'typedef TSeqPos TLength'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 242 of file Seq_literal_.hpp.

References CSeq_literal_Base::m_set_State.

Referenced by CSeq_literal_Base::CanGetLength(), s_GetUngapLoc(), CSeq_literal_Base::SetLength(), CValidError_bioseq::ValidateDelta(), and CGapsEditor::x_SetGapParameters().

IsSetLinkage()

bool CSeq_gap_Base::IsSetLinkage ( void  ) const

inline

Check if a value has been assigned to Linkage data member.

Data member Linkage is optional; its type is defined as 'typedef int TLinkage'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 310 of file Seq_gap_.hpp.

References CSeq_gap_Base::m_set_State.

Referenced by CSeq_gap::AddLinkageEvidence(), BOOST_AUTO_TEST_CASE(), CSeq_gap_Base::CanGetLinkage(), CSeq_gap::ChangeType(), CSeq_literal::GetBridgeability(), CUpdateSeq_Input::s_IsGoodLiteral(), CSeq_gap_Base::SetLinkage(), CValidError_bioseq::ValidateDelta(), and CValidError_bioseq::ValidateSeqGap().

IsSetLinkage_evidence()

bool CSeq_gap_Base::IsSetLinkage_evidence ( void  ) const

inline

Check if a value has been assigned to Linkage_evidence data member.

Data member Linkage_evidence is optional; its type is defined as 'typedef list< CRef< CLinkage_evidence > > TLinkage_evidence'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 357 of file Seq_gap_.hpp.

References CSeq_gap_Base::m_set_State.

Referenced by CSeq_gap::AddLinkageEvidence(), BOOST_AUTO_TEST_CASE(), CSeq_gap::ChangeType(), CSeq_literal::GetBridgeability(), CFastaOstream::GetGapModText(), CValidError_bioseq::HasBadWGSGap(), CValidError_bioseq::ValidateSeqGap(), and WriteLinkageEvidence().

IsSetMaploc()

bool CPubdesc_Base::IsSetMaploc ( void  ) const

inline

map location reported in paper Check if a value has been assigned to Maploc data member.

Data member Maploc is optional; its type is defined as 'typedef string TMaploc'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 832 of file Pubdesc_.hpp.

References CPubdesc_Base::m_set_State.

Referenced by CPubdesc_Base::CanGetMaploc(), s_CombineRefs(), CPubdesc_Base::SetMaploc(), and CReferenceItem::x_GatherRemark().

IsSetMol()

bool CSeq_inst_Base::IsSetMol ( void  ) const

inline

Check if a value has been assigned to Mol data member.

Data member Mol is mandatory; its type is defined as 'typedef EMol TMol'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 593 of file Seq_inst_.hpp.

References CSeq_inst_Base::m_set_State.

Referenced by CCleanup::AddMissingMolInfo(), CCleanup::AddPartialToProteinTitle(), CCleanup::AddProteinTitle(), CClearKeywords::ApplyToCSeq_entry(), CMolInfoEditDlg::ApplyToInst(), CMolInfoEditDlg::ApplyToMolInfo(), CFastaReaderEx::AssignMolType(), CSeq_inst_Base::CanGetMol(), CSequenceEditingEventHandler::ChangeToGenomicDna(), CFastaReader::CheckDataLine(), CSeq_inst::ConvertDeltaToRaw(), CNewCleanup_imp::CreateMissingMolInfo(), CMolInfoEditDlg::CreateNewMolInfo(), CSeqMap::CSeqMap(), sequpd::FindMatches(), CValidError_bioseq::GapByGapInst(), CBioseq_set::GetGenomicFromGenProdSet(), CMolInfoField::GetVal(), CDeflineProcess::IndexedProcess(), IsBadSeqInstStrand(), CEditingActionMolInfoClass::IsSetValue(), CMolInfoSubpanel::OnSelectButton(), CNewCleanup_imp::ProtSeqBC(), RawBioseqPack(), CNewCleanup_imp::RemoveBadProteinTitle(), CNewCleanup_imp::ResynchPeptidePartials(), s_ReplaceAllMolinfo(), s_WillReportTerminalGap(), CFlatfileProcess::SeqEntryProcess(), CGeneOverlapProcess::SeqEntryProcess(), CGeneFeatTreeProcess::SeqEntryProcess(), CMolInfoSubpanel::SetClusters(), CSeq_inst_Base::SetMol(), CCleanup::SetMolinfoTech(), CBioseq_Info::sx_ShallowCopy(), CValidError_imp::ValidateBioSourceForSeq(), CValidError_bioseq::ValidateInst(), CValidError_bioseq::ValidateNsAndGaps(), CFastaReader::x_NucOrProt(), CValidError_bioseq::x_ValidateAbuttingRNA(), and CFeatureTableReader::xConvertSeqIntoSeqSet().

IsSetName() [1/3]

bool CPubdesc_Base::IsSetName ( void  ) const

inline

name used in paper Check if a value has been assigned to Name data member.

Data member Name is optional; its type is defined as 'typedef string TName'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 623 of file Pubdesc_.hpp.

References CPubdesc_Base::m_set_State.

Referenced by CPubdesc_Base::CanGetName(), CCleanup::OkToPromoteNpPub(), and CPubdesc_Base::SetName().

IsSetName() [2/3]

bool CSeq_annot_Base::IsSetName ( void  ) const

inline

source if "other" above Check if a value has been assigned to Name data member.

Data member Name is optional; its type is defined as 'typedef string TName'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 793 of file Seq_annot_.hpp.

References CSeq_annot_Base::m_set_State.

Referenced by CSeq_annot_Base::CanGetName(), CBlobSplitterImpl::MakeSeq_annot(), s_IsMergeableFeatureTable(), CSeq_annot_Handle::Seq_annot_IsSetName(), CSeq_annot_Base::SetName(), and CAnnotGetter::x_GetCompleteSeqAnnot().

IsSetName() [3/3]

bool CTextannot_id_Base::IsSetName ( void  ) const

inline

Check if a value has been assigned to Name data member.

Data member Name is optional; its type is defined as 'typedef string TName'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 287 of file Textannot_id_.hpp.

References CTextannot_id_Base::m_set_State.

Referenced by CTextannot_id_Base::CanGetName(), and CTextannot_id_Base::SetName().

IsSetNames()

bool CNum_enum_Base::IsSetNames ( void  ) const

inline

the tags Check if a value has been assigned to Names data member.

Data member Names is mandatory; its type is defined as 'typedef list< string > TNames'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 243 of file Num_enum_.hpp.

References CNum_enum_Base::m_set_State.

IsSetNum() [1/2]

bool CNum_enum_Base::IsSetNum ( void  ) const

inline

number of tags to follow Check if a value has been assigned to Num data member.

Data member Num is mandatory; its type is defined as 'typedef TSeqPos TNum'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 196 of file Num_enum_.hpp.

References CNum_enum_Base::m_set_State.

Referenced by CNum_enum_Base::CanGetNum(), and CNum_enum_Base::SetNum().

IsSetNum() [2/2]

bool CPubdesc_Base::IsSetNum ( void  ) const

inline

numbering from paper Check if a value has been assigned to Num data member.

Data member Num is optional; its type is defined as 'typedef CNumbering TNum'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 717 of file Pubdesc_.hpp.

References CPubdesc_Base::m_Num.

Referenced by CPubdesc_Base::CanGetNum(), CCleanup::OkToPromoteNpPub(), CAutogeneratedCleanup::x_BasicCleanupSeqFeat_data_data_pub_ETC(), and CAutogeneratedCleanup::x_BasicCleanupSeqFeatXrefPub().

IsSetNumexc()

bool CPubdesc_Base::IsSetNumexc ( void  ) const

inline

numbering problem with paper Check if a value has been assigned to Numexc data member.

Data member Numexc is optional; its type is defined as 'typedef bool TNumexc'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 738 of file Pubdesc_.hpp.

References CPubdesc_Base::m_set_State.

Referenced by CPubdesc_Base::CanGetNumexc(), and CPubdesc_Base::SetNumexc().

IsSetPoly_a()

bool CPubdesc_Base::IsSetPoly_a ( void  ) const

inline

poly A tail indicated in figure? Check if a value has been assigned to Poly_a data member.

Data member Poly_a is optional; its type is defined as 'typedef bool TPoly_a'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 785 of file Pubdesc_.hpp.

References CPubdesc_Base::m_set_State.

Referenced by CPubdesc_Base::CanGetPoly_a(), s_CombineRefs(), CPubdesc_Base::SetPoly_a(), and CReferenceItem::x_GatherRemark().

IsSetPub()

bool CPubdesc_Base::IsSetPub ( void  ) const

inline

the citation(s) Check if a value has been assigned to Pub data member.

Data member Pub is mandatory; its type is defined as 'typedef CPub_equiv TPub'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 593 of file Pubdesc_.hpp.

References CPubdesc_Base::m_Pub.

Referenced by CDiscrepancyContext::CParseNode::AddDescriptor(), CDiscrepancyContext::CParseNode::AddFeature(), CGlobalPubmedIdLookup::apply(), CheckSegPub(), CCleanupPub::CleanPubdesc(), CSubmissionWizard::ExportTemplate(), GetAuthList(), GetDocSumLabel(), CCleanup::GetPubdescLabels(), CPubField::GetPubTitle(), GetPubTitleAndAuthors(), CPubField::GetVals(), HasAuthor(), HasUnpubWithoutTitle(), IsCitSubMissingAffiliation(), CCleanup::IsMinPub(), CEditingActionDescPubTitle::Modify(), CEditingActionDescPubPmid::Modify(), IEditingActionDescAffil::Modify(), IEditingActionDescAuthors::Modify(), IEditingActionDescJournal::Modify(), CEditingActionDescAuthorNameList::Modify(), CRemoteUpdater::PostProcessPubs(), PrintBioseqXML(), CNewCleanup_imp::PubdescBC(), CFindASN1Dlg::ReplaceInPubdesc(), s_FirstPubMatchesSecond(), CMacroFunction_PubFields::s_GetStatus(), s_IsCitSub(), s_UpdateGlobalInfo(), SetAuthList(), SetAuthorNames(), CRelaxedLookupDlg::SetPubdesc(), CPubField::SetPubTitle(), CMacroFunction_ISOJTALookup::TheFunction(), CMacroFunction_LookupPub::TheFunction(), CRemarksAndSerialNumberPanel::TransferDataFromWindow(), CRemarksAndSerialNumberPanel::TransferDataToWindow(), CValidError_imp::ValidatePubdesc(), IAuthorEditor::x_ApplyToPubdesc(), CAutogeneratedCleanup::x_BasicCleanupSeqFeat_data_data_pub_ETC(), CAutogeneratedCleanup::x_BasicCleanupSeqFeatXrefPub(), CReferenceItem::x_GatherInfo(), CValidError_bioseq::x_HasCitSub(), CNewCleanup_imp::x_IsPubContentBad(), and CSrcWriter::xGather().

IsSetRefnum()

bool CNum_cont_Base::IsSetRefnum ( void  ) const

inline

number assigned to first residue Check if a value has been assigned to Refnum data member.

Data member Refnum is optional with default 1; its type is defined as 'typedef TSignedSeqPos TRefnum'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 247 of file Num_cont_.hpp.

References CNum_cont_Base::m_set_State.

Referenced by CNum_cont_Base::SetRefnum().

IsSetReftype()

bool CPubdesc_Base::IsSetReftype ( void  ) const

inline

Check if a value has been assigned to Reftype data member.

Data member Reftype is optional with default eReftype_seq; its type is defined as 'typedef int TReftype'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1020 of file Pubdesc_.hpp.

References CPubdesc_Base::m_set_State.

Referenced by CPubdesc_Base::SetReftype().

IsSetRelease()

bool CTextannot_id_Base::IsSetRelease ( void  ) const

inline

Check if a value has been assigned to Release data member.

Data member Release is optional; its type is defined as 'typedef string TRelease'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 381 of file Textannot_id_.hpp.

References CTextannot_id_Base::m_set_State.

Referenced by CTextannot_id_Base::CanGetRelease(), and CTextannot_id_Base::SetRelease().

IsSetReplaced_by()

bool CSeq_hist_Base::IsSetReplaced_by ( void  ) const

inline

these seqs make this one obsolete Check if a value has been assigned to Replaced_by data member.

Data member Replaced_by is optional; its type is defined as 'typedef CSeq_hist_rec TReplaced_by'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 546 of file Seq_hist_.hpp.

References CSeq_hist_Base::m_Replaced_by.

Referenced by CSeq_hist_Base::CanGetReplaced_by(), CBlobSplitterImpl::CopySequence(), CEditHistory::CreateControls(), CRemoveSeqHistAssembly::GetCommand(), CModifySeqId::GetCommand(), s_CheckDataStatus(), CValidError_bioseq::ValidateHistory(), CAutogeneratedCleanup::x_BasicCleanupSeqHist(), and x_FindLatestSequence().

IsSetReplaces()

bool CSeq_hist_Base::IsSetReplaces ( void  ) const

inline

seq makes these seqs obsolete Check if a value has been assigned to Replaces data member.

Data member Replaces is optional; its type is defined as 'typedef CSeq_hist_rec TReplaces'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 525 of file Seq_hist_.hpp.

References CSeq_hist_Base::m_Replaces.

Referenced by CLoadSecondaryAccessions::apply(), CSeq_hist_Base::CanGetReplaces(), CBlobSplitterImpl::CopySequence(), CEditHistory::CreateControls(), CAddSecondary::GetCommand(), CRemoveSeqHistAssembly::GetCommand(), CModifySeqId::GetCommand(), CValidError_bioseq::ValidateHistory(), CAutogeneratedCleanup::x_BasicCleanupSeqHist(), CFlatGatherer::x_HistoryComments(), and CGenbankFormatter::x_LocusHtmlPrefix().

IsSetRepr()

bool CSeq_inst_Base::IsSetRepr ( void  ) const

inline

Check if a value has been assigned to Repr data member.

Data member Repr is mandatory; its type is defined as 'typedef ERepr TRepr'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 546 of file Seq_inst_.hpp.

References CSeq_inst_Base::m_set_State.

Referenced by CSeq_inst_Base::CanGetRepr(), CFeatureTableReader::ChangeDeltaProteinToRawProtein(), CSeq_inst::ConvertDeltaToRaw(), ConvertRawToDeltaByNs(), CRawSeqToDeltaByN::DeltaSeqToRaw(), CValidError_bioseq::GapByGapInst(), CDeflineProcess::IndexedProcess(), CConvertBadCdsAndRnaToMiscFeat::IsExtendableLeft(), IsExtendableLeft(), CConvertBadCdsAndRnaToMiscFeat::IsExtendableRight(), IsExtendableRight(), CValidError_bioseq::IsMaster(), NormalizeUnknownLengthGaps(), CUpdateSeq_Input::s_IsDeltaWithFarPointers(), CUpdateSeq_Input::s_IsDeltaWithNoGaps(), s_WillReportTerminalGap(), CFlatfileProcess::SeqEntryProcess(), CSeq_inst_Base::SetRepr(), CBioseq_Info::sx_ShallowCopy(), CDeflineProcess::UnindexedProcess(), CValidError_bioseq::ValidateCompleteGenome(), CValidError_bioseq::ValidateNsAndGaps(), CValidError_bioseq::ValidateSegRef(), CEditObjectSeq_feat::x_HandleCdsProduct(), CValidError_bioseq::x_IsRangeGap(), CValidError_bioseq::x_ParentAndComponentLocationsDiffer(), and CCdregionValidator::x_ValidateParentPartialness().

IsSetSeq_data() [1/2]

bool CSeq_inst_Base::IsSetSeq_data ( void  ) const

inline

the sequence Check if a value has been assigned to Seq_data data member.

Data member Seq_data is optional; its type is defined as 'typedef CSeq_data TSeq_data'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 805 of file Seq_inst_.hpp.

References CSeq_inst_Base::m_Seq_data.

Referenced by CBlobSplitterImpl::AttachToSkeleton(), BOOST_AUTO_TEST_CASE(), CSeq_inst_Base::CanGetSeq_data(), CheckTranslatedBioseq(), CkNonTerSP(), CGapsEditor::ConvertNs2Gaps(), ConvertRawToDeltaByNs(), CBlobSplitterImpl::CopySequence(), CBlobSplitterImpl::CopySkeleton(), CSeqMap::CSeqMap(), GapsToDelta(), CValidError_bioseq::GetDataLen(), CBlobSplitterImpl::GetLength(), GetNcbieaaString(), GetNcbistdSeq(), GetRawSequenceString(), GetResidueAtPosition(), GetRetranslateCDSCommand(), GetSeqLength(), MakeSeqVectorForResidueCounting(), CBioseq::PackAsDeltaSeq(), CSeqAnnotFromFasta::PurgeNonAlphaFromSequence(), RawBioseqPack(), RevComp(), s_AddSeqDataToPssm(), SeqToDelta(), SeqToDeltaSP(), SetNewProteinSequence(), CBioseq_Info::sx_ShallowCopy(), TrimStopsFromCompleteCDS(), CValidError_bioseq::ValidateRawConst(), CValidError_bioseq::ValidateRepr(), CCleanup::WGSCleanup(), CVdbFastaExtractor::Write(), CVectorTrimPanel::x_RetranslateCDS(), CSplitDataLoader::x_SplitSeqData(), and CForeignContaminationScreenReportReader::xTrimData().

IsSetSeq_data() [2/2]

bool CSeq_literal_Base::IsSetSeq_data ( void  ) const

inline

may have the data Check if a value has been assigned to Seq_data data member.

Data member Seq_data is optional; its type is defined as 'typedef CSeq_data TSeq_data'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 310 of file Seq_literal_.hpp.

References CSeq_literal_Base::m_Seq_data.

Referenced by AddLiteral(), variation::CVariationUtil::AttachSeq(), CBlobSplitterImpl::AttachToSkeleton(), CSeq_literal_Base::CanGetSeq_data(), CSeq_inst::ConvertDeltaToRaw(), CGapsEditor::ConvertNs2Gaps(), CBlobSplitterImpl::CopySequence(), variation::CVariationUtil::FlipStrand(), g_CreateIdentity(), g_CreateVarref(), CSeq_literal::GetBridgeability(), HasAssemblyOrNullGap(), CValidError_bioseq::HasBadWGSGap(), variation::CVariationUtil::Remap(), CValidError_bioseq::ReportBadAssemblyGap(), s_ContainsSeqDataIupacna(), s_GetFlankingGapTypes(), s_IntervalsMatchGaps(), s_IsConWithGaps(), CUpdateSeq_Input::s_IsGoodLiteral(), CVariation_ref::SetIdentity(), variation::CVariationUtil::TranslateNAtoAA(), CValidError_bioseq::ValidateDelta(), CSeqMap::x_Add(), CValidError_graph::x_GetLitLength(), variation::CHgvsParser::x_PlacementCoordsToStr(), CGapsEditor::x_SetGapParameters(), CValidError_graph::x_ValidateGraphOnDeltaBioseq(), CForeignContaminationScreenReportReader::xCheckLen(), and CForeignContaminationScreenReportReader::xTrimLiteral().

IsSetSeq_raw()

bool CPubdesc_Base::IsSetSeq_raw ( void  ) const

inline

original sequence from paper Check if a value has been assigned to Seq_raw data member.

Data member Seq_raw is optional; its type is defined as 'typedef string TSeq_raw'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 879 of file Pubdesc_.hpp.

References CPubdesc_Base::m_set_State.

Referenced by CPubdesc_Base::CanGetSeq_raw(), and CPubdesc_Base::SetSeq_raw().

IsSetStrand()

bool CSeq_inst_Base::IsSetStrand ( void  ) const

inline

Check if a value has been assigned to Strand data member.

Data member Strand is optional; its type is defined as 'typedef EStrand TStrand'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 758 of file Seq_inst_.hpp.

References CSeq_inst_Base::m_set_State.

Referenced by CMolInfoEditDlg::ApplyToInst(), CSeq_inst_Base::CanGetStrand(), CBlobSplitterImpl::CopySequence(), CMolInfoField::GetVal(), IsBadSeqInstStrand(), CEditingActionMolInfoStrand::IsSetValue(), s_ReplaceAllMolinfo(), CSeq_inst_Base::SetStrand(), CBioseq_Info::sx_ShallowCopy(), CValidError_bioseq::ValidateInst(), and CValidError_bioseq::ValidateMolInfoContext().

IsSetTech()

bool CMolInfo_Base::IsSetTech ( void  ) const

inline

Check if a value has been assigned to Tech data member.

Data member Tech is optional with default eTech_unknown; its type is defined as 'typedef int TTech'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 472 of file MolInfo_.hpp.

References CMolInfo_Base::m_set_State.

Referenced by CMolInfoEditDlg::ApplyToMolInfo(), CAlignCollapser::GetCollapsedAlgnments(), GetDescrEmblBlock(), GetGBBlock(), CAutoDef::GetKeywordPrefix(), CMolInfo::GetLabel(), CAlignCollapser::GetOnlyOtherAlignments(), CValidError_feat::GetTSACDSOnMinusStrandErrors(), CMolInfoField::GetVal(), IsBioseqTSA(), IsEmptyMolInfo(), CEditingActionMolInfoTechnique::IsSetValue(), CValidError_bioseq::IsWGS(), MakeMailReportPreReport(), CTabularFormatter_Tech::Print(), CCleanup::SetMolinfoBiomol(), CCleanup::SetMolinfoTech(), CMolInfo_Base::SetTech(), CReadInSkipObjectHook< Object >::SkipObject(), CValidError_bioseq::ValidateBioseqContext(), CValidError_bioseq::ValidateDupOrOverlapFeats(), CValidError_desc::ValidateMolInfo(), CValidError_bioseq::ValidateMolInfoContext(), CNewCleanup_imp::x_CleanupGenbankBlock(), CSGSegmentsSeqIDJob::x_Execute(), CDeflineGenerator::x_GetModifiers(), CSGSegmentSmearJob::x_LoadFromDeltaSeqs(), CValidError_bioseq::x_SetupCommonFlags(), CValidError_bioseq::x_ValidateBarcode(), XMLGetEMBLBlock(), and XMLGetGBBlock().

IsSetTechexp()

bool CMolInfo_Base::IsSetTechexp ( void  ) const

inline

explanation if tech not enough

Completeness is not indicated in most records. For genomes, assume the sequences are incomplete unless specifically marked as complete. For mRNAs, assume the ends are not known exactly unless marked as having the left or right end.

Check if a value has been assigned to Techexp data member.

Data member Techexp is optional; its type is defined as 'typedef string TTechexp'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 522 of file MolInfo_.hpp.

References CMolInfo_Base::m_set_State.

Referenced by CMolInfo_Base::CanGetTechexp(), fta_check_mga_keywords(), CMolInfo::GetLabel(), CMolInfoField::GetVal(), IsEmptyMolInfo(), and CMolInfo_Base::SetTechexp().

IsSetTopology()

bool CSeq_inst_Base::IsSetTopology ( void  ) const

inline

Check if a value has been assigned to Topology data member.

Data member Topology is optional with default eTopology_linear; its type is defined as 'typedef ETopology TTopology'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 708 of file Seq_inst_.hpp.

References CSeq_inst_Base::m_set_State.

Referenced by CMolInfoEditDlg::ApplyToInst(), CBlobSplitterImpl::CopySequence(), CMolInfoField::GetVal(), CEditingActionMolInfoTopology::IsSetValue(), CMolInfoSubpanel::OnSelectButton(), CNewCleanup_imp::ProtSeqBC(), s_ReplaceAllMolinfo(), CMolInfoSubpanel::SetClusters(), CSeq_inst_Base::SetTopology(), CBioseq_Info::sx_ShallowCopy(), CValidError_bioseq::ValidateInst(), CValidError_imp::ValidateSeqLoc(), CValidError_bioseq::x_BadMetazoanMitochondrialLength(), CValidError_bioseq::x_IgnoreEndGap(), and CValidError_bioseq::x_ValidateCompletness().

IsSetType() [1/3]

bool CLinkage_evidence_Base::IsSetType ( void  ) const

inline

Check if a value has been assigned to Type data member.

Data member Type is mandatory; its type is defined as 'typedef int TType'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 172 of file Linkage_evidence_.hpp.

References CLinkage_evidence_Base::m_set_State.

Referenced by CLinkage_evidence_Base::CanGetType(), and CLinkage_evidence_Base::SetType().

IsSetType() [2/3]

bool CNum_ref_Base::IsSetType ( void  ) const

inline

Check if a value has been assigned to Type data member.

Data member Type is mandatory; its type is defined as 'typedef EType TType'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 209 of file Num_ref_.hpp.

References CNum_ref_Base::m_set_State.

Referenced by CNum_ref_Base::CanGetType(), and CNum_ref_Base::SetType().

IsSetType() [3/3]

bool CSeq_gap_Base::IsSetType ( void  ) const

inline

Check if a value has been assigned to Type data member.

Data member Type is mandatory; its type is defined as 'typedef int TType'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 263 of file Seq_gap_.hpp.

References CSeq_gap_Base::m_set_State.

Referenced by CSeq_gap::AddLinkageEvidence(), CSeq_gap_Base::CanGetType(), CValidError_bioseq::HasBadWGSGap(), CValidError_bioseq::ReportBadAssemblyGap(), ResetLinkageEvidence(), s_GetFlankingGapTypes(), CUpdateSeq_Input::s_IsGoodLiteral(), CSeq_gap_Base::SetType(), CValidError_bioseq::ValidateDelta(), and CValidError_bioseq::ValidateSeqGap().

IsSetUnits()

bool CNum_real_Base::IsSetUnits ( void  ) const

inline

Check if a value has been assigned to Units data member.

Data member Units is optional; its type is defined as 'typedef string TUnits'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 336 of file Num_real_.hpp.

References CNum_real_Base::m_set_State.

Referenced by CNum_real_Base::CanGetUnits(), and CNum_real_Base::SetUnits().

IsSetVersion()

bool CTextannot_id_Base::IsSetVersion ( void  ) const

inline

Check if a value has been assigned to Version data member.

Data member Version is optional; its type is defined as 'typedef int TVersion'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 428 of file Textannot_id_.hpp.

References CTextannot_id_Base::m_set_State.

Referenced by CTextannot_id_Base::CanGetVersion(), CSeq_annot_SplitInfo::GetName(), CTextannot_id_Base::SetVersion(), and CSeq_annot_Info::x_UpdateName().

IsSource()

bool CSeqdesc_Base::IsSource ( void  ) const

inline

Check if variant Source is selected.

Source type is defined as 'typedef CBioSource TSource'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 1190 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Source, and CSeqdesc_Base::m_choice.

Referenced by CQualLookupMap::AddDesc(), CDiscrepancyContext::CParseNode::AddDescriptor(), CCleanup::AddPartialToProteinTitle(), CClickableSortUniqueCount::AddToBulkEditList(), BOOST_AUTO_TEST_CASE(), CFlatFileTextItem::CFlatFileTextItem(), CSrcTableColumnBase::ClearVal(), CBioseqEditor::EditSelection(), GenerateDiffListFromBioSource(), GenerateDiffListFromDescriptors(), IEditingAction::GetActionCommand(), CLowerQuals::GetCommand(), CFlatFileViewContext::GetEditObject(), variation::CVariationUtil::GetMolType(), CCleanup::GetNormalizableGeneQualPairs(), GetOrg_refOrNull(), CMiscSeqTableColumn::GetRelatedApplyObjects(), CBioseq::GetTaxId(), CSrcTableColumnBase::GetVal(), CSrcTableColumnBase::GetVals(), CDiscrepancyPanel::OnDblClk(), CBioseqEditor::OnDeleteSelection(), SMatchSrc::operator()(), CFindASN1Dlg::ReplaceInDesc(), s_GetTaxId(), CDescrCache::SetBioSource(), CMiscSeqTableColumn::SetVal(), CPropagateDescriptors::ShouldStayInPlace(), CReadInSkipObjectHook< Object >::SkipObject(), sReportInvalidDescriptor(), TestOneStrain(), CRemoteUpdater::UpdateOrgFromTaxon(), USING_SCOPE(), CValidError_imp::ValidateSubSource(), CSubmissionWizard::x_ApplyDescriptorToRecord(), CWriteDB_Impl::x_BuildDeflinesFromBioseq(), CValidErrorFormat::x_FormatBadInstCodeForSubmitterReport(), CValidErrorFormat::x_FormatBadSpecificHostForSubmitterReport(), variation_ref::CHgvsParser::x_SeqIdToHgvsHeader(), CBioseqContext::x_SetTaxname(), and CGffFeatureContext::xAssignSequenceHasBioSource().

IsSp()

bool CSeqdesc_Base::IsSp ( void  ) const

inline

Check if variant Sp is selected.

Sp type is defined as 'typedef CSP_block TSp'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 1128 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Sp, and CSeqdesc_Base::m_choice.

IsSrc()

bool CAnnotdesc_Base::IsSrc ( void  ) const

inline

Check if variant Src is selected.

Src type is defined as 'typedef CSeq_id TSrc'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 579 of file Annotdesc_.hpp.

References CAnnotdesc_Base::e_Src, and CAnnotdesc_Base::m_choice.

IsTitle() [1/2]

bool CAnnotdesc_Base::IsTitle ( void  ) const

inline

Check if variant Title is selected.

Title type is defined as 'typedef string TTitle'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 515 of file Annotdesc_.hpp.

References CAnnotdesc_Base::e_Title, and CAnnotdesc_Base::m_choice.

Referenced by NSnpBins::ReadAnnotDesc().

IsTitle() [2/2]

bool CSeqdesc_Base::IsTitle ( void  ) const

inline

Check if variant Title is selected.

Title type is defined as 'typedef string TTitle'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 1026 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Title, and CSeqdesc_Base::m_choice.

Referenced by BOOST_AUTO_TEST_CASE(), CDefinitionLineField::GetVal(), CDefinitionLineField::IsEmpty(), CEditingActionDescDefline::IsSetValue(), STitleMatchString::operator()(), CFindASN1Dlg::ReplaceInDesc(), s_HasTitle(), CDefinitionLineField::SetVal(), CPropagateDescriptors::ShouldStayInPlace(), CReadInSkipObjectHook< Object >::SkipObject(), CWriteDB_Impl::x_BuildDeflinesFromBioseq(), and CMakeProfileDBApp::x_UpdateCobalt().

IsUpdate_date() [1/2]

bool CAnnotdesc_Base::IsUpdate_date ( void  ) const

inline

Check if variant Update_date is selected.

Update_date type is defined as 'typedef CDate TUpdate_date'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 573 of file Annotdesc_.hpp.

References CAnnotdesc_Base::e_Update_date, and CAnnotdesc_Base::m_choice.

IsUpdate_date() [2/2]

bool CSeqdesc_Base::IsUpdate_date ( void  ) const

inline

Check if variant Update_date is selected.

Update_date type is defined as 'typedef CDate TUpdate_date'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 1152 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Update_date, and CSeqdesc_Base::m_choice.

Referenced by s_GetDate(), and CPropagateDescriptors::ShouldStayInPlace().

IsUser() [1/2]

bool CAnnotdesc_Base::IsUser ( void  ) const

inline

Check if variant User is selected.

User type is defined as 'typedef CUser_object TUser'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 561 of file Annotdesc_.hpp.

References CAnnotdesc_Base::e_User, and CAnnotdesc_Base::m_choice.

Referenced by CReadUtil::GetTrackValue(), MakeCompartments(), CUCSCRegionWriter::WriteAnnot(), CBedWriter::WriteAnnot(), CBioseqContext::x_CheckForShowComments(), and CVcfReader::xAssignVcfMeta().

IsUser() [2/2]

bool CSeqdesc_Base::IsUser ( void  ) const

inline

Check if variant User is selected.

User type is defined as 'typedef CUser_object TUser'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 1122 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_User, and CSeqdesc_Base::m_choice.

Referenced by CDBLinkField::ClearVal(), CGenomeProjectField::ClearVal(), CStructuredCommentField::ClearVal(), descr_cmp(), GetDBLinkIDs(), CEditObjectSeq_desc::GetEditCommand(), CSGUtils::GetFeatFetchDepth(), CBioseq_Info::GetFeatureFetchPolicy(), CApplyStructCommentTreeItemData::GetMacroDescription(), CDBLinkField::GetRelatedObjects(), CStructuredCommentField::GetRelatedObjects(), CGenomeProjectField::GetVal(), CDBLinkField::GetVals(), CLocalIDField::GetVals(), CStructuredCommentField::GetVals(), CTable2AsnContext::IsDBLink(), CDBLinkField::IsEmpty(), CGenomeProjectField::IsEmpty(), CLocalIDField::IsEmpty(), CStructuredCommentField::IsEmpty(), CEditingActionDescGenomeProjectId::IsSetValue(), CEditingActionDescStructCommDbName::IsSetValue(), CSeqEntrySource::IsUnverified(), CValidError_desc::IsValidStructuredComment(), CValidator::IsValidStructuredComment(), isVersionsObject(), CMultiReader::LoadTemplate(), CEditingActionDescStructCommFieldName::Modify(), CEditingActionDescComment::Modify(), s_FastaGetOriginalID(), s_GetOriginalID(), s_GetUserObjectType(), s_IsDBLink(), s_IsReportableStructuredComment(), s_IsTpa(), CDescrCache::SetDBLink(), CDescrCache::SetFileTrack(), CDescrCache::SetGenomeProjects(), CDescrCache::SetTpaAssembly(), CDBLinkField::SetVal(), CStructuredCommentField::SetVal(), CGenomeProjectField::SetVal(), CEditingActionDescGenomeProjectId::SetValue(), CEditingActionDescStructCommDbName::SetValue(), CEditingActionDescStructCommFieldName::SetValue(), CValidError_bioseqset::ShouldHaveNoDblink(), CPropagateDescriptors::ShouldStayInPlace(), CSubmissionWizard::x_ApplyDescriptorToRecord(), CWriteDB_Impl::x_GetFastaReaderDeflines(), CStructCommFieldValuePair::x_GetUser_Object(), CCommonComponentScorer::x_GetUserCompList(), CNewCleanup_imp::x_IsDBLinkUserObj(), CFlatGatherer::x_StructuredComments(), and CSrcWriter::xGetOriginalId().

operator const Tdata &() [1/5]

CAnnot_descr_Base::operator const CAnnot_descr_Base::Tdata & ( void  ) const

inline

Conversion operator to 'const Tdata' type.

Definition at line 177 of file Annot_descr_.hpp.

operator const Tdata &() [2/5]

CDelta_ext_Base::operator const CDelta_ext_Base::Tdata & ( void  ) const

inline

Conversion operator to 'const Tdata' type.

Definition at line 177 of file Delta_ext_.hpp.

operator const Tdata &() [3/5]

CMap_ext_Base::operator const CMap_ext_Base::Tdata & ( void  ) const

inline

Conversion operator to 'const Tdata' type.

Definition at line 177 of file Map_ext_.hpp.

operator const Tdata &() [4/5]

CSeg_ext_Base::operator const CSeg_ext_Base::Tdata & ( void  ) const

inline

Conversion operator to 'const Tdata' type.

Definition at line 177 of file Seg_ext_.hpp.

operator const Tdata &() [5/5]

CSeq_descr_Base::operator const CSeq_descr_Base::Tdata & ( void  ) const

inline

Conversion operator to 'const Tdata' type.

Definition at line 179 of file Seq_descr_.hpp.

operator Tdata &() [1/5]

CAnnot_descr_Base::operator CAnnot_descr_Base::Tdata & ( void  )

inline

Conversion operator to 'Tdata' type.

Definition at line 183 of file Annot_descr_.hpp.

operator Tdata &() [2/5]

CDelta_ext_Base::operator CDelta_ext_Base::Tdata & ( void  )

inline

Conversion operator to 'Tdata' type.

Definition at line 183 of file Delta_ext_.hpp.

operator Tdata &() [3/5]

CMap_ext_Base::operator CMap_ext_Base::Tdata & ( void  )

inline

Conversion operator to 'Tdata' type.

Definition at line 183 of file Map_ext_.hpp.

operator Tdata &() [4/5]

CSeg_ext_Base::operator CSeg_ext_Base::Tdata & ( void  )

inline

Conversion operator to 'Tdata' type.

Definition at line 183 of file Seg_ext_.hpp.

operator Tdata &() [5/5]

CSeq_descr_Base::operator CSeq_descr_Base::Tdata & ( void  )

inline

Conversion operator to 'Tdata' type.

Definition at line 185 of file Seq_descr_.hpp.

operator<<() [1/11]

NCBI_NS_NCBI::CNcbiOstream& operator<< ( NCBI_NS_NCBI::CNcbiOstream &  str, const CHeterogen_Base &  obj  )

inline

Definition at line 107 of file Heterogen_.hpp.

References str(), and WriteObject().

operator<<() [2/11]

NCBI_NS_NCBI::CNcbiOstream& operator<< ( NCBI_NS_NCBI::CNcbiOstream &  str, const CIUPACaa_Base &  obj  )

inline

Definition at line 107 of file IUPACaa_.hpp.

References str(), and WriteObject().

operator<<() [3/11]

NCBI_NS_NCBI::CNcbiOstream& operator<< ( NCBI_NS_NCBI::CNcbiOstream &  str, const CIUPACna_Base &  obj  )

inline

Definition at line 107 of file IUPACna_.hpp.

References str(), and WriteObject().

operator<<() [4/11]

NCBI_NS_NCBI::CNcbiOstream& operator<< ( NCBI_NS_NCBI::CNcbiOstream &  str, const CNCBI2na_Base &  obj  )

inline

Definition at line 107 of file NCBI2na_.hpp.

References str(), and WriteObject().

operator<<() [5/11]

NCBI_NS_NCBI::CNcbiOstream& operator<< ( NCBI_NS_NCBI::CNcbiOstream &  str, const CNCBI4na_Base &  obj  )

inline

Definition at line 109 of file NCBI4na_.hpp.

References str(), and WriteObject().

operator<<() [6/11]

NCBI_NS_NCBI::CNcbiOstream& operator<< ( NCBI_NS_NCBI::CNcbiOstream &  str, const CNCBI8aa_Base &  obj  )

inline

Definition at line 107 of file NCBI8aa_.hpp.

References str(), and WriteObject().

operator<<() [7/11]

NCBI_NS_NCBI::CNcbiOstream& operator<< ( NCBI_NS_NCBI::CNcbiOstream &  str, const CNCBI8na_Base &  obj  )

inline

Definition at line 107 of file NCBI8na_.hpp.

References str(), and WriteObject().

operator<<() [8/11]

NCBI_NS_NCBI::CNcbiOstream& operator<< ( NCBI_NS_NCBI::CNcbiOstream &  str, const CNCBIeaa_Base &  obj  )

inline

Definition at line 108 of file NCBIeaa_.hpp.

References str(), and WriteObject().

operator<<() [9/11]

NCBI_NS_NCBI::CNcbiOstream& operator<< ( NCBI_NS_NCBI::CNcbiOstream &  str, const CNCBIpaa_Base &  obj  )

inline

Definition at line 109 of file NCBIpaa_.hpp.

References str(), and WriteObject().

operator<<() [10/11]

NCBI_NS_NCBI::CNcbiOstream& operator<< ( NCBI_NS_NCBI::CNcbiOstream &  str, const CNCBIpna_Base &  obj  )

inline

Definition at line 108 of file NCBIpna_.hpp.

References str(), and WriteObject().

operator<<() [11/11]

NCBI_NS_NCBI::CNcbiOstream& operator<< ( NCBI_NS_NCBI::CNcbiOstream &  str, const CNCBIstdaa_Base &  obj  )

inline

Definition at line 107 of file NCBIstdaa_.hpp.

References str(), and WriteObject().

operator=() [1/46]

C_Data& CSeq_annot_Base::C_Data::operator= ( const C_Data &  )

private

operator=() [2/46]

C_Deleted& CSeq_hist_Base::C_Deleted::operator= ( const C_Deleted &  )

private

operator=() [3/46]

CAlign_def& CAlign_def::operator= ( const CAlign_def &  value )

private

operator=() [4/46]

CAlign_def_Base& CAlign_def_Base::operator= ( const CAlign_def_Base &  )

private

operator=() [5/46]

CAnnot_descr& CAnnot_descr::operator= ( const CAnnot_descr &  value )

private

operator=() [6/46]

CAnnot_descr_Base& CAnnot_descr_Base::operator= ( const CAnnot_descr_Base &  )

private

operator=() [7/46]

CAnnot_id& CAnnot_id::operator= ( const CAnnot_id &  value )

private

operator=() [8/46]

CAnnot_id_Base& CAnnot_id_Base::operator= ( const CAnnot_id_Base &  )

private

operator=() [9/46]

CAnnotdesc& CAnnotdesc::operator= ( const CAnnotdesc &  value )

private

operator=() [10/46]

CAnnotdesc_Base& CAnnotdesc_Base::operator= ( const CAnnotdesc_Base &  )

private

operator=() [11/46]

CBioseq_Base& CBioseq_Base::operator= ( const CBioseq_Base &  )

private

operator=() [12/46]

CDelta_ext_Base& CDelta_ext_Base::operator= ( const CDelta_ext_Base &  )

private

operator=() [13/46]

CDelta_seq& CDelta_seq::operator= ( const CDelta_seq &  value )

private

operator=() [14/46]

CDelta_seq_Base& CDelta_seq_Base::operator= ( const CDelta_seq_Base &  )

private

operator=() [15/46]

CLinkage_evidence_Base& CLinkage_evidence_Base::operator= ( const CLinkage_evidence_Base &  )

private

operator=() [16/46]

CMap_ext& CMap_ext::operator= ( const CMap_ext &  value )

private

operator=() [17/46]

CMap_ext_Base& CMap_ext_Base::operator= ( const CMap_ext_Base &  )

private

operator=() [18/46]

CMolInfo_Base& CMolInfo_Base::operator= ( const CMolInfo_Base &  )

private

operator=() [19/46]

CNum_cont& CNum_cont::operator= ( const CNum_cont &  value )

private

operator=() [20/46]

CNum_cont_Base& CNum_cont_Base::operator= ( const CNum_cont_Base &  )

private

operator=() [21/46]

CNum_enum& CNum_enum::operator= ( const CNum_enum &  value )

private

operator=() [22/46]

CNum_enum_Base& CNum_enum_Base::operator= ( const CNum_enum_Base &  )

private

operator=() [23/46]

CNum_real& CNum_real::operator= ( const CNum_real &  value )

private

operator=() [24/46]

CNum_real_Base& CNum_real_Base::operator= ( const CNum_real_Base &  )

private

operator=() [25/46]

CNum_ref& CNum_ref::operator= ( const CNum_ref &  value )

private

operator=() [26/46]

CNum_ref_Base& CNum_ref_Base::operator= ( const CNum_ref_Base &  )

private

operator=() [27/46]

CNumbering& CNumbering::operator= ( const CNumbering &  value )

private

operator=() [28/46]

CNumbering_Base& CNumbering_Base::operator= ( const CNumbering_Base &  )

private

operator=() [29/46]

CPubdesc_Base& CPubdesc_Base::operator= ( const CPubdesc_Base &  )

private

operator=() [30/46]

CSeg_ext& CSeg_ext::operator= ( const CSeg_ext &  value )

private

operator=() [31/46]

CSeg_ext_Base& CSeg_ext_Base::operator= ( const CSeg_ext_Base &  )

private

operator=() [32/46]

CSeq_annot_Base& CSeq_annot_Base::operator= ( const CSeq_annot_Base &  )

private

operator=() [33/46]

CSeq_data_Base& CSeq_data_Base::operator= ( const CSeq_data_Base &  )

private

operator=() [34/46]

CSeq_descr_Base& CSeq_descr_Base::operator= ( const CSeq_descr_Base &  )

private

operator=() [35/46]

CSeq_ext& CSeq_ext::operator= ( const CSeq_ext &  value )

private

operator=() [36/46]

CSeq_ext_Base& CSeq_ext_Base::operator= ( const CSeq_ext_Base &  )

private

operator=() [37/46]

CSeq_gap_Base& CSeq_gap_Base::operator= ( const CSeq_gap_Base &  )

private

operator=() [38/46]

CSeq_hist& CSeq_hist::operator= ( const CSeq_hist &  value )

private

operator=() [39/46]

CSeq_hist_Base& CSeq_hist_Base::operator= ( const CSeq_hist_Base &  )

private

operator=() [40/46]

CSeq_hist_rec& CSeq_hist_rec::operator= ( const CSeq_hist_rec &  value )

private

operator=() [41/46]

CSeq_hist_rec_Base& CSeq_hist_rec_Base::operator= ( const CSeq_hist_rec_Base &  )

private

operator=() [42/46]

CSeq_inst_Base& CSeq_inst_Base::operator= ( const CSeq_inst_Base &  )

private

operator=() [43/46]

CSeq_literal_Base& CSeq_literal_Base::operator= ( const CSeq_literal_Base &  )

private

operator=() [44/46]

CSeqdesc_Base& CSeqdesc_Base::operator= ( const CSeqdesc_Base &  )

private

operator=() [45/46]

CTextannot_id& CTextannot_id::operator= ( const CTextannot_id &  value )

private

operator=() [46/46]

CTextannot_id_Base& CTextannot_id_Base::operator= ( const CTextannot_id_Base &  )

private

operator>>() [1/11]

NCBI_NS_NCBI::CNcbiIstream& operator>> ( NCBI_NS_NCBI::CNcbiIstream &  str, CHeterogen_Base &  obj  )

inline

Definition at line 118 of file Heterogen_.hpp.

References ReadObject(), and str().

operator>>() [2/11]

NCBI_NS_NCBI::CNcbiIstream& operator>> ( NCBI_NS_NCBI::CNcbiIstream &  str, CIUPACaa_Base &  obj  )

inline

Definition at line 118 of file IUPACaa_.hpp.

References ReadObject(), and str().

operator>>() [3/11]

NCBI_NS_NCBI::CNcbiIstream& operator>> ( NCBI_NS_NCBI::CNcbiIstream &  str, CIUPACna_Base &  obj  )

inline

Definition at line 118 of file IUPACna_.hpp.

References ReadObject(), and str().

operator>>() [4/11]

NCBI_NS_NCBI::CNcbiIstream& operator>> ( NCBI_NS_NCBI::CNcbiIstream &  str, CNCBI2na_Base &  obj  )

inline

Definition at line 114 of file NCBI2na_.hpp.

References ReadObject(), and str().

operator>>() [5/11]

NCBI_NS_NCBI::CNcbiIstream& operator>> ( NCBI_NS_NCBI::CNcbiIstream &  str, CNCBI4na_Base &  obj  )

inline

Definition at line 116 of file NCBI4na_.hpp.

References ReadObject(), and str().

operator>>() [6/11]

NCBI_NS_NCBI::CNcbiIstream& operator>> ( NCBI_NS_NCBI::CNcbiIstream &  str, CNCBI8aa_Base &  obj  )

inline

Definition at line 114 of file NCBI8aa_.hpp.

References ReadObject(), and str().

operator>>() [7/11]

NCBI_NS_NCBI::CNcbiIstream& operator>> ( NCBI_NS_NCBI::CNcbiIstream &  str, CNCBI8na_Base &  obj  )

inline

Definition at line 114 of file NCBI8na_.hpp.

References ReadObject(), and str().

operator>>() [8/11]

NCBI_NS_NCBI::CNcbiIstream& operator>> ( NCBI_NS_NCBI::CNcbiIstream &  str, CNCBIeaa_Base &  obj  )

inline

Definition at line 119 of file NCBIeaa_.hpp.

References ReadObject(), and str().

operator>>() [9/11]

NCBI_NS_NCBI::CNcbiIstream& operator>> ( NCBI_NS_NCBI::CNcbiIstream &  str, CNCBIpaa_Base &  obj  )

inline

Definition at line 116 of file NCBIpaa_.hpp.

References ReadObject(), and str().

operator>>() [10/11]

NCBI_NS_NCBI::CNcbiIstream& operator>> ( NCBI_NS_NCBI::CNcbiIstream &  str, CNCBIpna_Base &  obj  )

inline

Definition at line 115 of file NCBIpna_.hpp.

References ReadObject(), and str().

operator>>() [11/11]

NCBI_NS_NCBI::CNcbiIstream& operator>> ( NCBI_NS_NCBI::CNcbiIstream &  str, CNCBIstdaa_Base &  obj  )

inline

Definition at line 114 of file NCBIstdaa_.hpp.

References ReadObject(), and str().

Reset() [1/30]

void CAlign_def_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 68 of file Align_def_.cpp.

References CAlign_def_Base::ResetAlign_type(), and CAlign_def_Base::ResetIds().

Reset() [2/30]

void CAnnot_descr_Base::Reset

(

void

)

Reset data member.

Definition at line 51 of file Annot_descr_.cpp.

References CAnnot_descr_Base::m_data, and CAnnot_descr_Base::m_set_State.

Reset() [3/30]

void CAnnot_id_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 53 of file Annot_id_.cpp.

References CAnnot_id_Base::e_not_set, CAnnot_id_Base::m_choice, and CAnnot_id_Base::ResetSelection().

Referenced by CAnnot_id_Base::~CAnnot_id_Base().

Reset() [4/30]

void CAnnotdesc_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 56 of file Annotdesc_.cpp.

References CAnnotdesc_Base::e_not_set, CAnnotdesc_Base::m_choice, and CAnnotdesc_Base::ResetSelection().

Referenced by CAnnotdesc_Base::~CAnnotdesc_Base().

Reset() [5/30]

void CBioseq_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 97 of file Bioseq_.cpp.

References CBioseq_Base::ResetAnnot(), CBioseq_Base::ResetDescr(), CBioseq_Base::ResetId(), and CBioseq_Base::ResetInst().

Referenced by CBlobSplitterImpl::CopySkeleton(), CAlnVec::CreateConsensus(), CCleanupApp::x_ProcessTraditionally(), and CFeatureTableReader::xParseCdregions().

Reset() [6/30]

void CDelta_ext_Base::Reset

(

void

)

Reset data member.

Definition at line 51 of file Delta_ext_.cpp.

References CDelta_ext_Base::m_data, and CDelta_ext_Base::m_set_State.

Reset() [7/30]

void CDelta_seq_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 52 of file Delta_seq_.cpp.

References CDelta_seq_Base::e_not_set, CDelta_seq_Base::m_choice, and CDelta_seq_Base::ResetSelection().

Referenced by CDelta_seq_Base::~CDelta_seq_Base().

Reset() [8/30]

END_ENUM_INFO void CLinkage_evidence_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 69 of file Linkage_evidence_.cpp.

References CLinkage_evidence_Base::ResetType().

Reset() [9/30]

void CMap_ext_Base::Reset

(

void

)

Reset data member.

Definition at line 51 of file Map_ext_.cpp.

References CMap_ext_Base::m_data, and CMap_ext_Base::m_set_State.

Reset() [10/30]

void CMolInfo_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 135 of file MolInfo_.cpp.

References CMolInfo_Base::ResetBiomol(), CMolInfo_Base::ResetCompleteness(), CMolInfo_Base::ResetGbmoltype(), CMolInfo_Base::ResetTech(), and CMolInfo_Base::ResetTechexp().

Reset() [11/30]

void CNum_cont_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 50 of file Num_cont_.cpp.

References CNum_cont_Base::ResetAscending(), CNum_cont_Base::ResetHas_zero(), and CNum_cont_Base::ResetRefnum().

Reset() [12/30]

void CNum_enum_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 56 of file Num_enum_.cpp.

References CNum_enum_Base::ResetNames(), and CNum_enum_Base::ResetNum().

Reset() [13/30]

void CNum_real_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 56 of file Num_real_.cpp.

References CNum_real_Base::ResetA(), CNum_real_Base::ResetB(), and CNum_real_Base::ResetUnits().

Reset() [14/30]

void CNum_ref_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 78 of file Num_ref_.cpp.

References CNum_ref_Base::ResetAligns(), and CNum_ref_Base::ResetType().

Reset() [15/30]

void CNumbering_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 54 of file Numbering_.cpp.

References CNumbering_Base::e_not_set, CNumbering_Base::m_choice, and CNumbering_Base::ResetSelection().

Referenced by CNumbering_Base::~CNumbering_Base().

Reset() [16/30]

void CPubdesc_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 124 of file Pubdesc_.cpp.

References CPubdesc_Base::ResetAlign_group(), CPubdesc_Base::ResetComment(), CPubdesc_Base::ResetFig(), CPubdesc_Base::ResetMaploc(), CPubdesc_Base::ResetName(), CPubdesc_Base::ResetNum(), CPubdesc_Base::ResetNumexc(), CPubdesc_Base::ResetPoly_a(), CPubdesc_Base::ResetPub(), CPubdesc_Base::ResetReftype(), and CPubdesc_Base::ResetSeq_raw().

Referenced by CMacroFunction_LookupPub::TheFunction().

Reset() [17/30]

void CSeg_ext_Base::Reset

(

void

)

Reset data member.

Definition at line 51 of file Seg_ext_.cpp.

References CSeg_ext_Base::m_data, and CSeg_ext_Base::m_set_State.

Reset() [18/30]

END_ENUM_INFO void CSeq_annot_Base::C_Data::Reset

(

void

)

Reset the whole object.

Definition at line 73 of file Seq_annot_.cpp.

References CSeq_annot_Base::C_Data::e_not_set, CSeq_annot_Base::C_Data::m_choice, and CSeq_annot_Base::C_Data::ResetSelection().

Reset() [19/30]

void CSeq_annot_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 249 of file Seq_annot_.cpp.

References CSeq_annot_Base::ResetData(), CSeq_annot_Base::ResetDb(), CSeq_annot_Base::ResetDesc(), CSeq_annot_Base::ResetId(), and CSeq_annot_Base::ResetName().

Referenced by GetInteractionDataFromIbis(), CFeatAnnotAssembler::InitializeAnnot(), CRmReader::Read(), CFeatImportApp::Run(), and CSeq_annot_Base::C_Data::~C_Data().

Reset() [20/30]

void CSeq_data_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 51 of file Seq_data_.cpp.

References CSeq_data_Base::e_not_set, CSeq_data_Base::m_choice, and CSeq_data_Base::ResetSelection().

Referenced by CSeqportUtil_implementation::AppendIupacaa(), CSeqportUtil_implementation::AppendIupacna(), CSeqportUtil_implementation::AppendNcbi2na(), CSeqportUtil_implementation::AppendNcbi4na(), CSeqportUtil_implementation::AppendNcbieaa(), CSeqportUtil_implementation::AppendNcbistdaa(), CSeqportUtil_implementation::GetAmbigs_iupacna_ncbi2na(), CSeqportUtil_implementation::GetAmbigs_ncbi4na_ncbi2na(), CSeqportUtil_implementation::GetIupacaaCopy(), CSeqportUtil_implementation::GetIupacnaCopy(), CSeqportUtil_implementation::GetNcbi2naCopy(), CSeqportUtil_implementation::GetNcbi4naCopy(), CSeqportUtil_implementation::GetNcbieaaCopy(), CSeqportUtil_implementation::GetNcbistdaaCopy(), CSeqportUtil_implementation::MapIupacnaToNcbi2na(), CSeqportUtil_implementation::MapNcbi4naToNcbi2na(), and CSeq_data_Base::~CSeq_data_Base().

Reset() [21/30]

void CSeq_descr_Base::Reset

(

void

)

Reset data member.

Definition at line 51 of file Seq_descr_.cpp.

References CSeq_descr_Base::m_data, and CSeq_descr_Base::m_set_State.

Referenced by BioseqSetDescriptorPropagateUp(), and CSequesterSets::BioseqSetDescriptorPropagateUp().

Reset() [22/30]

void CSeq_ext_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 54 of file Seq_ext_.cpp.

References CSeq_ext_Base::e_not_set, CSeq_ext_Base::m_choice, and CSeq_ext_Base::ResetSelection().

Referenced by CSeq_ext_Base::~CSeq_ext_Base().

Reset() [23/30]

void CSeq_gap_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 86 of file Seq_gap_.cpp.

References CSeq_gap_Base::ResetLinkage(), CSeq_gap_Base::ResetLinkage_evidence(), and CSeq_gap_Base::ResetType().

Referenced by AdjustGap().

Reset() [24/30]

void CSeq_hist_Base::C_Deleted::Reset

(

void

)

Reset the whole object.

Definition at line 53 of file Seq_hist_.cpp.

References CSeq_hist_Base::C_Deleted::e_not_set, CSeq_hist_Base::C_Deleted::m_choice, and CSeq_hist_Base::C_Deleted::ResetSelection().

Reset() [25/30]

void CSeq_hist_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 208 of file Seq_hist_.cpp.

References CSeq_hist_Base::ResetAssembly(), CSeq_hist_Base::ResetDeleted(), CSeq_hist_Base::ResetReplaced_by(), and CSeq_hist_Base::ResetReplaces().

Referenced by CSeq_hist_Base::C_Deleted::~C_Deleted().

Reset() [26/30]

void CSeq_hist_rec_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 75 of file Seq_hist_rec_.cpp.

References CSeq_hist_rec_Base::ResetDate(), and CSeq_hist_rec_Base::ResetIds().

Reset() [27/30]

void CSeq_inst_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 176 of file Seq_inst_.cpp.

References CSeq_inst_Base::ResetExt(), CSeq_inst_Base::ResetFuzz(), CSeq_inst_Base::ResetHist(), CSeq_inst_Base::ResetLength(), CSeq_inst_Base::ResetMol(), CSeq_inst_Base::ResetRepr(), CSeq_inst_Base::ResetSeq_data(), CSeq_inst_Base::ResetStrand(), and CSeq_inst_Base::ResetTopology().

Reset() [28/30]

void CSeq_literal_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 86 of file Seq_literal_.cpp.

References CSeq_literal_Base::ResetFuzz(), CSeq_literal_Base::ResetLength(), and CSeq_literal_Base::ResetSeq_data().

Reset() [29/30]

void CSeqdesc_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 65 of file Seqdesc_.cpp.

References CSeqdesc_Base::e_not_set, CSeqdesc_Base::m_choice, and CSeqdesc_Base::ResetSelection().

Referenced by CSeqdesc_Base::~CSeqdesc_Base().

Reset() [30/30]

void CTextannot_id_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 68 of file Textannot_id_.cpp.

References CTextannot_id_Base::ResetAccession(), CTextannot_id_Base::ResetName(), CTextannot_id_Base::ResetRelease(), and CTextannot_id_Base::ResetVersion().

ResetA()

void CNum_real_Base::ResetA ( void  )

inline

Reset A data member.

Definition at line 254 of file Num_real_.hpp.

References CNum_real_Base::m_A, and CNum_real_Base::m_set_State.

Referenced by CNum_real_Base::Reset().

ResetAccession()

void CTextannot_id_Base::ResetAccession

(

void

)

Reset Accession data member.

Definition at line 56 of file Textannot_id_.cpp.

References CTextannot_id_Base::m_Accession, and CTextannot_id_Base::m_set_State.

Referenced by CTextannot_id_Base::Reset().

ResetAlign_group()

void CPubdesc_Base::ResetAlign_group ( void  )

inline

Reset Align_group data member.

Definition at line 938 of file Pubdesc_.hpp.

References CPubdesc_Base::m_Align_group, and CPubdesc_Base::m_set_State.

Referenced by CPubdesc_Base::Reset().

ResetAlign_type()

void CAlign_def_Base::ResetAlign_type ( void  )

inline

Reset Align_type data member.

Definition at line 220 of file Align_def_.hpp.

References CAlign_def_Base::m_Align_type, and CAlign_def_Base::m_set_State.

Referenced by CAlign_def_Base::Reset().

ResetAligns()

END_ENUM_INFO void CNum_ref_Base::ResetAligns

(

void

)

Reset Aligns data member.

Definition at line 61 of file Num_ref_.cpp.

References CNum_ref_Base::m_Aligns.

Referenced by CNum_ref_Base::Reset().

ResetAnnot()

void CBioseq_Base::ResetAnnot

(

void

)

Reset Annot data member.

Definition at line 91 of file Bioseq_.cpp.

References CBioseq_Base::m_Annot, and CBioseq_Base::m_set_State.

Referenced by BOOST_AUTO_TEST_CASE(), CFeatureTableReader::MoveRegionsToProteins(), CDUpdater::reformatBioseq(), CFeatureTableReader::RemoveEmptyFtable(), CCdsToMatPeptide::RemoveFeature(), CReadBlastApp::RemoveProblems(), CBioseq_Base::Reset(), CAgpconvertApplication::Run(), s_RemoveAnnotsFromEntry(), SimplifyBioseqForCD(), TestOneMiscPartial(), CSequenceUpdater::x_PrepareNewEntry(), CNewCleanup_imp::x_RemoveEmptyFeatureTables(), CPrimeCacheApplication::x_StripSeqEntry(), and CFeatureTableReader::xParseCdregions().

ResetAscending()

void CNum_cont_Base::ResetAscending ( void  )

inline

Reset Ascending data member.

Definition at line 359 of file Num_cont_.hpp.

References CNum_cont_Base::m_Ascending, and CNum_cont_Base::m_set_State.

Referenced by CNum_cont_Base::Reset(), and CNum_cont_Base::SetDefaultAscending().

ResetAssembly()

void CSeq_hist_Base::ResetAssembly

(

void

)

Reset Assembly data member.

Definition at line 151 of file Seq_hist_.cpp.

References CSeq_hist_Base::m_Assembly, and CSeq_hist_Base::m_set_State.

Referenced by CCreateSeqHistForTpa::GetCreateSeqHistFromTpaCommand(), and CSeq_hist_Base::Reset().

ResetB()

void CNum_real_Base::ResetB ( void  )

inline

Reset B data member.

Definition at line 301 of file Num_real_.hpp.

References CNum_real_Base::m_B, and CNum_real_Base::m_set_State.

Referenced by CNum_real_Base::Reset().

ResetBiomol()

void CMolInfo_Base::ResetBiomol ( void  )

inline

Reset Biomol data member.

Definition at line 434 of file MolInfo_.hpp.

References CMolInfo_Base::eBiomol_unknown, CMolInfo_Base::m_Biomol, and CMolInfo_Base::m_set_State.

Referenced by CMolInfoField::ClearVal(), CMolInfo_Base::Reset(), CEditingActionMolInfoMolecule::ResetValue(), CMolInfo_Base::SetDefaultBiomol(), and CNewCleanup_imp::x_FixUnsetMolFromBiomol().

ResetComment()

void CPubdesc_Base::ResetComment

(

void

)

Reset Comment data member.

Definition at line 118 of file Pubdesc_.cpp.

References CPubdesc_Base::m_Comment, and CPubdesc_Base::m_set_State.

Referenced by CCleanupPub::CleanPubdesc(), fta_strip_er_remarks(), CPubdesc_Base::Reset(), and CRemarksAndSerialNumberPanel::TransferDataFromWindow().

ResetCompleteness()

void CMolInfo_Base::ResetCompleteness ( void  )

inline

Reset Completeness data member.

Definition at line 581 of file MolInfo_.hpp.

References CMolInfo_Base::eCompleteness_unknown, CMolInfo_Base::m_Completeness, and CMolInfo_Base::m_set_State.

Referenced by CMolInfoField::ClearVal(), CMolInfo_Base::Reset(), CEditingActionMolInfoCompletedness::ResetValue(), and CMolInfo_Base::SetDefaultCompleteness().

ResetData()

void CSeq_annot_Base::ResetData

(

void

)

Reset Data data member.

Definition at line 235 of file Seq_annot_.cpp.

References CSeq_annot_Base::m_Data, and CRef< C, Locker >::Reset().

Referenced by CSeq_annot_Base::CSeq_annot_Base(), CSeq_annot_Base::GetData(), CSeq_annot_Base::Reset(), and CSeq_annot_Base::SetData().

ResetDate()

void CSeq_hist_rec_Base::ResetDate

(

void

)

Reset Date data member.

Definition at line 52 of file Seq_hist_rec_.cpp.

References CSeq_hist_rec_Base::m_Date.

Referenced by CSeq_hist_rec_Base::Reset().

ResetDb()

void CSeq_annot_Base::ResetDb ( void  )

inline

Reset Db data member.

Definition at line 758 of file Seq_annot_.hpp.

References CSeq_annot_Base::m_Db, and CSeq_annot_Base::m_set_State.

Referenced by CSeq_annot_Base::Reset().

ResetDeleted()

void CSeq_hist_Base::ResetDeleted

(

void

)

Reset Deleted data member.

Definition at line 191 of file Seq_hist_.cpp.

References CSeq_hist_Base::m_Deleted.

Referenced by CSeq_hist_Base::Reset().

ResetDesc()

void CSeq_annot_Base::ResetDesc

(

void

)

Reset Desc data member.

Definition at line 218 of file Seq_annot_.cpp.

References CSeq_annot_Base::m_Desc.

Referenced by CSeq_annot_Base::Reset().

ResetDescr()

void CBioseq_Base::ResetDescr

(

void

)

Reset Descr data member.

Definition at line 60 of file Bioseq_.cpp.

References CBioseq_Base::m_Descr.

Referenced by BOOST_AUTO_TEST_CASE(), CCdFromFasta::ImportAlignmentData(), CTable2AsnContext::MergeSeqDescr(), CApplyMods::operator()(), CCleanup::RemoveNcbiCleanupObject(), RemoveUserObjectType(), CBioseq_Base::Reset(), SimplifyBioseqForCD(), CChangeSeqdescTitleCommand::Unexecute(), CNewCleanup_imp::x_ClearEmptyDescr(), CPrimeCacheApplication::x_Process_Fasta(), CSplitDataLoader::x_SplitSeq(), and CPrimeCacheApplication::x_StripSeqEntry().

ResetExt()

void CSeq_inst_Base::ResetExt

(

void

)

Reset Ext data member.

Definition at line 142 of file Seq_inst_.cpp.

References CSeq_inst_Base::m_Ext.

Referenced by CExpandGaps::apply(), CFastaReader::AssembleSeq(), CSeq_inst::ConvertDeltaToRaw(), CGapsEditor::ConvertNs2Gaps(), CRawSeqToDeltaByN::DeltaSeqToRaw(), CBioseq::PackAsDeltaSeq(), CSeq_inst_Base::Reset(), CSequenceUpdater::s_UpdateSeqInst(), TrimSeqData(), CFeatureGenerator::SImplementation::x_CreateProteinBioseq(), CSeqMap::x_DoUpdateSeq_inst(), CUpdateSeq_Input::x_ReadAccession(), CSequenceUpdater::x_ReplaceSequence(), CWGSSeqIterator::x_SetDeltaOrData(), CVectorTrimPanel::x_SetSeqData(), CSequenceAmbigTrimmer::x_SliceBioseq(), and CSequenceAmbigTrimmer::x_TrimToNothing().

ResetFig()

void CPubdesc_Base::ResetFig

(

void

)

Reset Fig data member.

Definition at line 83 of file Pubdesc_.cpp.

References CPubdesc_Base::m_Fig, and CPubdesc_Base::m_set_State.

Referenced by CPubdesc_Base::Reset().

ResetFuzz() [1/2]

END_ENUM_INFO void CSeq_inst_Base::ResetFuzz

(

void

)

Reset Fuzz data member.

Definition at line 108 of file Seq_inst_.cpp.

References CSeq_inst_Base::m_Fuzz.

Referenced by CSeq_inst_Base::Reset().

ResetFuzz() [2/2]

void CSeq_literal_Base::ResetFuzz

(

void

)

Reset Fuzz data member.

Definition at line 52 of file Seq_literal_.cpp.

References CSeq_literal_Base::m_Fuzz.

Referenced by CConvertSelectedGaps::apply_impl(), CSeq_literal_Base::Reset(), and CSeqMap::x_DoUpdateSeq_inst().

ResetGbmoltype()

void CMolInfo_Base::ResetGbmoltype

(

void

)

Reset Gbmoltype data member.

Definition at line 129 of file MolInfo_.cpp.

References CMolInfo_Base::m_Gbmoltype, and CMolInfo_Base::m_set_State.

Referenced by CMolInfo_Base::Reset().

ResetHas_zero()

void CNum_cont_Base::ResetHas_zero ( void  )

inline

Reset Has_zero data member.

Definition at line 309 of file Num_cont_.hpp.

References CNum_cont_Base::m_Has_zero, and CNum_cont_Base::m_set_State.

Referenced by CNum_cont_Base::Reset(), and CNum_cont_Base::SetDefaultHas_zero().

ResetHist()

void CSeq_inst_Base::ResetHist

(

void

)

Reset Hist data member.

Definition at line 159 of file Seq_inst_.cpp.

References CSeq_inst_Base::m_Hist.

Referenced by CEditHistory::GetCommand(), CRemoveSeqHistAssembly::GetCommand(), and CSeq_inst_Base::Reset().

ResetId() [1/2]

void CBioseq_Base::ResetId

(

void

)

Reset Id data member.

Definition at line 54 of file Bioseq_.cpp.

References CBioseq_Base::m_Id, and CBioseq_Base::m_set_State.

Referenced by BOOST_FIXTURE_TEST_CASE(), CAddBioseqChecker::Do(), sequpd::FixCollidingIDs_Bioseq(), PssmMaker::modifyQuery(), CBioseq_Base::Reset(), CSequenceUpdater::x_AdjustProteinFeature(), CSequenceUpdater::x_FixIDInNewEntry(), CAgpConverter::x_InitializeCopyOfTemplate(), CSequenceUpdater::x_PrepareNewEntry(), CCDSTranslationPanel::x_SetProtein(), CSequenceUpdater::x_UpdateProteinID(), and CFeatureTableReader::xAddProteinToSeqEntry().

ResetId() [2/2]

void CSeq_annot_Base::ResetId

(

void

)

Reset Id data member.

Definition at line 206 of file Seq_annot_.cpp.

References CSeq_annot_Base::m_Id, and CSeq_annot_Base::m_set_State.

Referenced by CSeq_annot_Base::Reset().

ResetIds() [1/2]

END_ENUM_INFO void CAlign_def_Base::ResetIds

(

void

)

Reset Ids data member.

Definition at line 62 of file Align_def_.cpp.

References CAlign_def_Base::m_Ids, and CAlign_def_Base::m_set_State.

Referenced by CAlign_def_Base::Reset().

ResetIds() [2/2]

void CSeq_hist_rec_Base::ResetIds

(

void

)

Reset Ids data member.

Definition at line 69 of file Seq_hist_rec_.cpp.

References CSeq_hist_rec_Base::m_Ids, and CSeq_hist_rec_Base::m_set_State.

Referenced by CSeq_hist_rec_Base::Reset().

ResetInst()

void CBioseq_Base::ResetInst

(

void

)

Reset Inst data member.

Definition at line 77 of file Bioseq_.cpp.

References CBioseq_Base::m_Inst.

Referenced by CBioseq_Base::CBioseq_Base(), CBioseq_Base::GetInst(), GetRetranslateCDSCommand(), CBioseq_Base::Reset(), CBioseq_Base::SetInst(), CCDSTranslationPanel::SetProtein(), and CSequenceUpdater::x_PrepareNewEntry().

ResetLength() [1/2]

void CSeq_inst_Base::ResetLength ( void  )

inline

Reset Length data member.

Definition at line 652 of file Seq_inst_.hpp.

References CSeq_inst_Base::m_Length, and CSeq_inst_Base::m_set_State.

Referenced by CSeq_inst_Base::Reset().

ResetLength() [2/2]

void CSeq_literal_Base::ResetLength ( void  )

inline

Reset Length data member.

Definition at line 254 of file Seq_literal_.hpp.

References CSeq_literal_Base::m_Length, and CSeq_literal_Base::m_set_State.

Referenced by CSeq_literal_Base::Reset().

ResetLinkage()

void CSeq_gap_Base::ResetLinkage ( void  )

inline

Reset Linkage data member.

Definition at line 322 of file Seq_gap_.hpp.

References CSeq_gap_Base::m_Linkage, and CSeq_gap_Base::m_set_State.

Referenced by AdjustGap(), BOOST_AUTO_TEST_CASE(), CSeq_gap::ChangeType(), CSeq_gap_Base::Reset(), and ResetLinkageEvidence().

ResetLinkage_evidence()

END_ENUM_INFO void CSeq_gap_Base::ResetLinkage_evidence

(

void

)

Reset Linkage_evidence data member.

Definition at line 80 of file Seq_gap_.cpp.

References CSeq_gap_Base::m_Linkage_evidence, and CSeq_gap_Base::m_set_State.

Referenced by AdjustGap(), CSeq_gap::ChangeType(), CSeq_gap_Base::Reset(), ResetLinkageEvidence(), CSeq_gap::SetLinkageTypeLinkedRepeat(), and CSeq_gap::SetLinkageTypeScaffold().

ResetMaploc()

void CPubdesc_Base::ResetMaploc

(

void

)

Reset Maploc data member.

Definition at line 106 of file Pubdesc_.cpp.

References CPubdesc_Base::m_Maploc, and CPubdesc_Base::m_set_State.

Referenced by CPubdesc_Base::Reset().

ResetMol()

void CSeq_inst_Base::ResetMol ( void  )

inline

Reset Mol data member.

Definition at line 605 of file Seq_inst_.hpp.

References CSeq_inst_Base::m_Mol, and CSeq_inst_Base::m_set_State.

Referenced by CMolInfoField::ClearVal(), CSeq_inst_Base::Reset(), and CEditingActionMolInfoClass::ResetValue().

ResetName() [1/3]

void CPubdesc_Base::ResetName

(

void

)

Reset Name data member.

Definition at line 77 of file Pubdesc_.cpp.

References CPubdesc_Base::m_Name, and CPubdesc_Base::m_set_State.

Referenced by CPubdesc_Base::Reset().

ResetName() [2/3]

void CSeq_annot_Base::ResetName

(

void

)

Reset Name data member.

Definition at line 212 of file Seq_annot_.cpp.

References CSeq_annot_Base::m_Name, and CSeq_annot_Base::m_set_State.

Referenced by CSeq_annot_Base::Reset(), and CGroupAlignmentsJob::x_CreateProjectItems().

ResetName() [3/3]

void CTextannot_id_Base::ResetName

(

void

)

Reset Name data member.

Definition at line 50 of file Textannot_id_.cpp.

References CTextannot_id_Base::m_Name, and CTextannot_id_Base::m_set_State.

Referenced by CTextannot_id_Base::Reset().

ResetNames()

void CNum_enum_Base::ResetNames

(

void

)

Reset Names data member.

Definition at line 50 of file Num_enum_.cpp.

References CNum_enum_Base::m_Names, and CNum_enum_Base::m_set_State.

Referenced by CNum_enum_Base::Reset().

ResetNum() [1/2]

void CNum_enum_Base::ResetNum ( void  )

inline

Reset Num data member.

Definition at line 208 of file Num_enum_.hpp.

References CNum_enum_Base::m_Num, and CNum_enum_Base::m_set_State.

Referenced by CNum_enum_Base::Reset().

ResetNum() [2/2]

void CPubdesc_Base::ResetNum

(

void

)

Reset Num data member.

Definition at line 89 of file Pubdesc_.cpp.

References CPubdesc_Base::m_Num.

Referenced by CPubdesc_Base::Reset().

ResetNumexc()

void CPubdesc_Base::ResetNumexc ( void  )

inline

Reset Numexc data member.

Definition at line 750 of file Pubdesc_.hpp.

References CPubdesc_Base::m_Numexc, and CPubdesc_Base::m_set_State.

Referenced by CPubdesc_Base::Reset().

ResetPoly_a()

void CPubdesc_Base::ResetPoly_a ( void  )

inline

Reset Poly_a data member.

Definition at line 797 of file Pubdesc_.hpp.

References CPubdesc_Base::m_Poly_a, and CPubdesc_Base::m_set_State.

Referenced by CPubdesc_Base::Reset().

ResetPub()

END_ENUM_INFO void CPubdesc_Base::ResetPub

(

void

)

Reset Pub data member.

Definition at line 63 of file Pubdesc_.cpp.

References CPubdesc_Base::m_Pub.

Referenced by CPubdesc_Base::CPubdesc_Base(), CReplaceEntirePubPanel::GetCommand(), CPubdesc_Base::GetPub(), CPubdesc_Base::Reset(), and CPubdesc_Base::SetPub().

ResetRefnum()

void CNum_cont_Base::ResetRefnum ( void  )

inline

Reset Refnum data member.

Definition at line 259 of file Num_cont_.hpp.

References CNum_cont_Base::m_Refnum, and CNum_cont_Base::m_set_State.

Referenced by CNum_cont_Base::Reset(), and CNum_cont_Base::SetDefaultRefnum().

ResetReftype()

void CPubdesc_Base::ResetReftype ( void  )

inline

Reset Reftype data member.

Definition at line 1032 of file Pubdesc_.hpp.

References CPubdesc_Base::eReftype_seq, CPubdesc_Base::m_Reftype, and CPubdesc_Base::m_set_State.

Referenced by CPubdesc_Base::Reset(), and CPubdesc_Base::SetDefaultReftype().

ResetRelease()

void CTextannot_id_Base::ResetRelease

(

void

)

Reset Release data member.

Definition at line 62 of file Textannot_id_.cpp.

References CTextannot_id_Base::m_Release, and CTextannot_id_Base::m_set_State.

Referenced by CTextannot_id_Base::Reset().

ResetReplaced_by()

void CSeq_hist_Base::ResetReplaced_by

(

void

)

Reset Replaced_by data member.

Definition at line 174 of file Seq_hist_.cpp.

References CSeq_hist_Base::m_Replaced_by.

Referenced by CSeq_hist_Base::Reset().

ResetReplaces()

void CSeq_hist_Base::ResetReplaces

(

void

)

Reset Replaces data member.

Definition at line 157 of file Seq_hist_.cpp.

References CSeq_hist_Base::m_Replaces.

Referenced by CSeq_hist_Base::Reset().

ResetRepr()

void CSeq_inst_Base::ResetRepr ( void  )

inline

Reset Repr data member.

Definition at line 558 of file Seq_inst_.hpp.

References CSeq_inst_Base::m_Repr, and CSeq_inst_Base::m_set_State.

Referenced by CSeq_inst_Base::Reset().

ResetSelection() [1/9]

void CAnnot_id_Base::ResetSelection ( void  )

virtual

Reset the selection (set it to e_not_set).

Definition at line 59 of file Annot_id_.cpp.

References CAnnot_id_Base::e_General, CAnnot_id_Base::e_Local, CAnnot_id_Base::e_not_set, CAnnot_id_Base::e_Other, CAnnot_id_Base::m_choice, and CAnnot_id_Base::m_object.

Referenced by CAnnot_id_Base::Reset(), CAnnot_id_Base::SetGeneral(), CAnnot_id_Base::SetLocal(), and CAnnot_id_Base::SetOther().

ResetSelection() [2/9]

void CAnnotdesc_Base::ResetSelection ( void  )

virtual

Reset the selection (set it to e_not_set).

Definition at line 62 of file Annotdesc_.cpp.

References CAnnotdesc_Base::e_Align, CAnnotdesc_Base::e_Comment, CAnnotdesc_Base::e_Create_date, CAnnotdesc_Base::e_Name, CAnnotdesc_Base::e_not_set, CAnnotdesc_Base::e_Pub, CAnnotdesc_Base::e_Region, CAnnotdesc_Base::e_Src, CAnnotdesc_Base::e_Title, CAnnotdesc_Base::e_Update_date, CAnnotdesc_Base::e_User, CAnnotdesc_Base::m_choice, CAnnotdesc_Base::m_object, and CAnnotdesc_Base::m_string.

Referenced by CAnnotdesc_Base::Reset(), CAnnotdesc_Base::SetAlign(), CAnnotdesc_Base::SetCreate_date(), CAnnotdesc_Base::SetPub(), CAnnotdesc_Base::SetRegion(), CAnnotdesc_Base::SetSrc(), CAnnotdesc_Base::SetUpdate_date(), and CAnnotdesc_Base::SetUser().

ResetSelection() [3/9]

void CDelta_seq_Base::ResetSelection ( void  )

virtual

Reset the selection (set it to e_not_set).

Definition at line 58 of file Delta_seq_.cpp.

References CDelta_seq_Base::e_Literal, CDelta_seq_Base::e_Loc, CDelta_seq_Base::e_not_set, CDelta_seq_Base::m_choice, and CDelta_seq_Base::m_object.

Referenced by CDelta_seq_Base::Reset(), CDelta_seq_Base::SetLiteral(), and CDelta_seq_Base::SetLoc().

ResetSelection() [4/9]

void CNumbering_Base::ResetSelection ( void  )

virtual

Reset the selection (set it to e_not_set).

Definition at line 60 of file Numbering_.cpp.

References CNumbering_Base::e_Cont, CNumbering_Base::e_Enum, CNumbering_Base::e_not_set, CNumbering_Base::e_Real, CNumbering_Base::e_Ref, CNumbering_Base::m_choice, and CNumbering_Base::m_object.

Referenced by CNumbering_Base::Reset(), CNumbering_Base::SetCont(), CNumbering_Base::SetEnum(), CNumbering_Base::SetReal(), and CNumbering_Base::SetRef().

ResetSelection() [5/9]

void CSeq_annot_Base::C_Data::ResetSelection

(

void

)

Reset the selection (set it to e_not_set).

Definition at line 79 of file Seq_annot_.cpp.

References e_not_set.

Referenced by CSeq_annot_Base::C_Data::Reset().

ResetSelection() [6/9]

void CSeq_data_Base::ResetSelection ( void  )

virtual

Reset the selection (set it to e_not_set).

Definition at line 57 of file Seq_data_.cpp.

References CSeq_data_Base::e_Gap, CSeq_data_Base::e_Iupacaa, CSeq_data_Base::e_Iupacna, CSeq_data_Base::e_Ncbi2na, CSeq_data_Base::e_Ncbi4na, CSeq_data_Base::e_Ncbi8aa, CSeq_data_Base::e_Ncbi8na, CSeq_data_Base::e_Ncbieaa, CSeq_data_Base::e_Ncbipaa, CSeq_data_Base::e_Ncbipna, CSeq_data_Base::e_Ncbistdaa, CSeq_data_Base::e_not_set, CSeq_data_Base::m_choice, CSeq_data_Base::m_Iupacaa, CSeq_data_Base::m_Iupacna, CSeq_data_Base::m_Ncbi2na, CSeq_data_Base::m_Ncbi4na, CSeq_data_Base::m_Ncbi8aa, CSeq_data_Base::m_Ncbi8na, CSeq_data_Base::m_Ncbieaa, CSeq_data_Base::m_Ncbipaa, CSeq_data_Base::m_Ncbipna, CSeq_data_Base::m_Ncbistdaa, and CSeq_data_Base::m_object.

Referenced by CSeq_data_Base::Reset(), and CSeq_data_Base::SetGap().

ResetSelection() [7/9]

void CSeq_ext_Base::ResetSelection ( void  )

virtual

Reset the selection (set it to e_not_set).

Definition at line 60 of file Seq_ext_.cpp.

References CSeq_ext_Base::e_Delta, CSeq_ext_Base::e_Map, CSeq_ext_Base::e_not_set, CSeq_ext_Base::e_Ref, CSeq_ext_Base::e_Seg, CSeq_ext_Base::m_choice, and CSeq_ext_Base::m_object.

Referenced by CSeq_ext_Base::Reset(), CSeq_ext_Base::SetDelta(), CSeq_ext_Base::SetMap(), CSeq_ext_Base::SetRef(), and CSeq_ext_Base::SetSeg().

ResetSelection() [8/9]

void CSeq_hist_Base::C_Deleted::ResetSelection

(

void

)

Reset the selection (set it to e_not_set).

Definition at line 59 of file Seq_hist_.cpp.

References e_not_set.

Referenced by CSeq_hist_Base::C_Deleted::Reset().

ResetSelection() [9/9]

void CSeqdesc_Base::ResetSelection ( void  )

virtual

Reset the selection (set it to e_not_set).

Definition at line 71 of file Seqdesc_.cpp.

References CSeqdesc_Base::e_Comment, CSeqdesc_Base::e_Create_date, CSeqdesc_Base::e_Dbxref, CSeqdesc_Base::e_Embl, CSeqdesc_Base::e_Genbank, CSeqdesc_Base::e_Het, CSeqdesc_Base::e_Maploc, CSeqdesc_Base::e_Modelev, CSeqdesc_Base::e_Modif, CSeqdesc_Base::e_Molinfo, CSeqdesc_Base::e_Name, CSeqdesc_Base::e_not_set, CSeqdesc_Base::e_Num, CSeqdesc_Base::e_Org, CSeqdesc_Base::e_Pdb, CSeqdesc_Base::e_Pir, CSeqdesc_Base::e_Prf, CSeqdesc_Base::e_Pub, CSeqdesc_Base::e_Region, CSeqdesc_Base::e_Source, CSeqdesc_Base::e_Sp, CSeqdesc_Base::e_Title, CSeqdesc_Base::e_Update_date, CSeqdesc_Base::e_User, CSeqdesc_Base::m_choice, CSeqdesc_Base::m_Het, CSeqdesc_Base::m_Modif, CSeqdesc_Base::m_object, and CSeqdesc_Base::m_string.

Referenced by CSeqdesc_Base::Reset(), CSeqdesc_Base::SetCreate_date(), CSeqdesc_Base::SetDbxref(), CSeqdesc_Base::SetEmbl(), CSeqdesc_Base::SetGenbank(), CSeqdesc_Base::SetMaploc(), CSeqdesc_Base::SetModelev(), CSeqdesc_Base::SetMolinfo(), CSeqdesc_Base::SetNum(), CSeqdesc_Base::SetOrg(), CSeqdesc_Base::SetPdb(), CSeqdesc_Base::SetPir(), CSeqdesc_Base::SetPrf(), CSeqdesc_Base::SetPub(), CSeqdesc_Base::SetSource(), CSeqdesc_Base::SetSp(), CSeqdesc_Base::SetUpdate_date(), and CSeqdesc_Base::SetUser().

ResetSeq_data() [1/2]

void CSeq_inst_Base::ResetSeq_data

(

void

)

Reset Seq_data data member.

Definition at line 125 of file Seq_inst_.cpp.

References CSeq_inst_Base::m_Seq_data.

Referenced by CGapsEditor::ConvertNs2Gaps(), ConvertRawToDeltaByNs(), PssmMaker::getTrunctMaster(), CBioseq::PackAsDeltaSeq(), CSeq_inst_Base::Reset(), TrimSeqData(), CFeatureGenerator::SImplementation::x_CollectMrnaSequence(), CSeqMap::x_DoUpdateSeq_inst(), CVectorTrimPanel::x_SetSeqData(), CSequenceAmbigTrimmer::x_SliceBioseq(), and CSequenceAmbigTrimmer::x_TrimToNothing().

ResetSeq_data() [2/2]

void CSeq_literal_Base::ResetSeq_data

(

void

)

Reset Seq_data data member.

Definition at line 69 of file Seq_literal_.cpp.

References CSeq_literal_Base::m_Seq_data.

Referenced by CSeq_literal_Base::Reset(), and CSeqMap::x_DoUpdateSeq_inst().

ResetSeq_raw()

void CPubdesc_Base::ResetSeq_raw

(

void

)

Reset Seq_raw data member.

Definition at line 112 of file Pubdesc_.cpp.

References CPubdesc_Base::m_Seq_raw, and CPubdesc_Base::m_set_State.

Referenced by CPubdesc_Base::Reset().

ResetStrand()

void CSeq_inst_Base::ResetStrand ( void  )

inline

Reset Strand data member.

Definition at line 770 of file Seq_inst_.hpp.

References CSeq_inst_Base::m_set_State, and CSeq_inst_Base::m_Strand.

Referenced by CMolInfoField::ClearVal(), CSeq_inst_Base::Reset(), CEditingActionMolInfoStrand::ResetValue(), CEditingBtnsPanel::rRNAtoDNA(), and CWGSSeqIterator::x_SetDeltaOrData().

ResetTech()

void CMolInfo_Base::ResetTech ( void  )

inline

Reset Tech data member.

Definition at line 484 of file MolInfo_.hpp.

References CMolInfo_Base::eTech_unknown, CMolInfo_Base::m_set_State, and CMolInfo_Base::m_Tech.

Referenced by CMolInfoField::ClearVal(), GetDescrEmblBlock(), GetGBBlock(), CMolInfo_Base::Reset(), CEditingActionMolInfoTechnique::ResetValue(), CMolInfo_Base::SetDefaultTech(), XMLGetEMBLBlock(), and XMLGetGBBlock().

ResetTechexp()

END_ENUM_INFO void CMolInfo_Base::ResetTechexp

(

void

)

Reset Techexp data member.

Definition at line 123 of file MolInfo_.cpp.

References CMolInfo_Base::m_set_State, and CMolInfo_Base::m_Techexp.

Referenced by CMolInfoField::ClearVal(), CMolInfo_Base::Reset(), and CMolInfoField::SetVal().

ResetTopology()

void CSeq_inst_Base::ResetTopology ( void  )

inline

Reset Topology data member.

Definition at line 720 of file Seq_inst_.hpp.

References CSeq_inst_Base::eTopology_linear, CSeq_inst_Base::m_set_State, and CSeq_inst_Base::m_Topology.

Referenced by CMolInfoField::ClearVal(), CSeq_inst_Base::Reset(), CEditingActionMolInfoTopology::ResetValue(), and CSeq_inst_Base::SetDefaultTopology().

ResetType() [1/3]

void CLinkage_evidence_Base::ResetType ( void  )

inline

Reset Type data member.

Definition at line 184 of file Linkage_evidence_.hpp.

References CLinkage_evidence_Base::m_set_State, and CLinkage_evidence_Base::m_Type.

Referenced by CLinkage_evidence_Base::Reset().

ResetType() [2/3]

void CNum_ref_Base::ResetType ( void  )

inline

Reset Type data member.

Definition at line 221 of file Num_ref_.hpp.

References CNum_ref_Base::m_set_State, and CNum_ref_Base::m_Type.

Referenced by CNum_ref_Base::Reset().

ResetType() [3/3]

void CSeq_gap_Base::ResetType ( void  )

inline

Reset Type data member.

Definition at line 275 of file Seq_gap_.hpp.

References CSeq_gap_Base::m_set_State, and CSeq_gap_Base::m_Type.

Referenced by BOOST_AUTO_TEST_CASE(), and CSeq_gap_Base::Reset().

ResetUnits()

void CNum_real_Base::ResetUnits

(

void

)

Reset Units data member.

Definition at line 50 of file Num_real_.cpp.

References CNum_real_Base::m_set_State, and CNum_real_Base::m_Units.

Referenced by CNum_real_Base::Reset().

ResetVersion()

void CTextannot_id_Base::ResetVersion ( void  )

inline

Reset Version data member.

Definition at line 440 of file Textannot_id_.hpp.

References CTextannot_id_Base::m_set_State, and CTextannot_id_Base::m_Version.

Referenced by CTextannot_id_Base::Reset().

Select() [1/18]

void CAnnot_id_Base::Select	(	E_Choice	index,
		EResetVariant	reset,
		CObjectMemoryPool *	pool
	)

Select the requested variant if needed, allocating CObject variants from memory pool.

Select() [2/18]

void CAnnotdesc_Base::Select	(	E_Choice	index,
		EResetVariant	reset,
		CObjectMemoryPool *	pool
	)

Select the requested variant if needed, allocating CObject variants from memory pool.

Select() [3/18]

void CDelta_seq_Base::Select	(	E_Choice	index,
		EResetVariant	reset,
		CObjectMemoryPool *	pool
	)

Select the requested variant if needed, allocating CObject variants from memory pool.

Select() [4/18]

void CNumbering_Base::Select	(	E_Choice	index,
		EResetVariant	reset,
		CObjectMemoryPool *	pool
	)

Select the requested variant if needed, allocating CObject variants from memory pool.

Select() [5/18]

void CSeq_annot_Base::C_Data::Select	(	E_Choice	index,
		EResetVariant	reset,
		CObjectMemoryPool *	pool
	)

Select the requested variant if needed, allocating CObject variants from memory pool.

Select() [6/18]

void CSeq_data_Base::Select	(	E_Choice	index,
		EResetVariant	reset,
		CObjectMemoryPool *	pool
	)

Select the requested variant if needed, allocating CObject variants from memory pool.

Select() [7/18]

void CSeq_ext_Base::Select	(	E_Choice	index,
		EResetVariant	reset,
		CObjectMemoryPool *	pool
	)

Select the requested variant if needed, allocating CObject variants from memory pool.

Select() [8/18]

void CSeq_hist_Base::C_Deleted::Select	(	E_Choice	index,
		EResetVariant	reset,
		CObjectMemoryPool *	pool
	)

Select the requested variant if needed, allocating CObject variants from memory pool.

Select() [9/18]

void CSeqdesc_Base::Select	(	E_Choice	index,
		EResetVariant	reset,
		CObjectMemoryPool *	pool
	)

Select the requested variant if needed, allocating CObject variants from memory pool.

Select() [10/18]

void CAnnot_id_Base::Select	(	E_Choice	index,
		EResetVariant	reset = eDoResetVariant
	)

Select the requested variant if needed.

Parameters

index	New selection state.
reset	Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant.

Referenced by CAnnot_id_Base::SetGeneral(), CAnnot_id_Base::SetLocal(), CAnnot_id_Base::SetNcbi(), and CAnnot_id_Base::SetOther().

Select() [11/18]

void CAnnotdesc_Base::Select	(	E_Choice	index,
		EResetVariant	reset = eDoResetVariant
	)

Select the requested variant if needed.

Parameters

index	New selection state.
reset	Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant.

Referenced by CAnnotdesc_Base::SetAlign(), CAnnotdesc_Base::SetComment(), CAnnotdesc_Base::SetCreate_date(), CAnnotdesc_Base::SetName(), CAnnotdesc_Base::SetPub(), CAnnotdesc_Base::SetRegion(), CAnnotdesc_Base::SetSrc(), CAnnotdesc_Base::SetTitle(), CAnnotdesc_Base::SetUpdate_date(), and CAnnotdesc_Base::SetUser().

Select() [12/18]

void CDelta_seq_Base::Select	(	E_Choice	index,
		EResetVariant	reset = eDoResetVariant
	)

Select the requested variant if needed.

Parameters

index	New selection state.
reset	Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant.

Referenced by CDelta_seq_Base::SetLiteral(), and CDelta_seq_Base::SetLoc().

Select() [13/18]

void CNumbering_Base::Select	(	E_Choice	index,
		EResetVariant	reset = eDoResetVariant
	)

Select the requested variant if needed.

Parameters

index	New selection state.
reset	Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant.

Referenced by CNumbering_Base::SetCont(), CNumbering_Base::SetEnum(), CNumbering_Base::SetReal(), and CNumbering_Base::SetRef().

Select() [14/18]

void CSeq_annot_Base::C_Data::Select	(	E_Choice	index,
		EResetVariant	reset = eDoResetVariant
	)

Select the requested variant if needed.

Parameters

index	New selection state.
reset	Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant.

Select() [15/18]

void CSeq_data_Base::Select	(	E_Choice	index,
		EResetVariant	reset = eDoResetVariant
	)

Select the requested variant if needed.

Parameters

index	New selection state.
reset	Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant.

Referenced by CSeqAnnotFromFasta::PurgeNonAlphaFromSequence(), CSeq_data_Base::SetGap(), CSeq_data_Base::SetIupacaa(), CSeq_data_Base::SetIupacna(), CSeq_data_Base::SetNcbi2na(), CSeq_data_Base::SetNcbi4na(), CSeq_data_Base::SetNcbi8aa(), CSeq_data_Base::SetNcbi8na(), CSeq_data_Base::SetNcbieaa(), CSeq_data_Base::SetNcbipaa(), CSeq_data_Base::SetNcbipna(), and CSeq_data_Base::SetNcbistdaa().

Select() [16/18]

void CSeq_ext_Base::Select	(	E_Choice	index,
		EResetVariant	reset = eDoResetVariant
	)

Select the requested variant if needed.

Parameters

index	New selection state.
reset	Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant.

Referenced by CSeq_ext_Base::SetDelta(), CSeq_ext_Base::SetMap(), CSeq_ext_Base::SetRef(), and CSeq_ext_Base::SetSeg().

Select() [17/18]

void CSeq_hist_Base::C_Deleted::Select	(	E_Choice	index,
		EResetVariant	reset = eDoResetVariant
	)

Select the requested variant if needed.

Parameters

index	New selection state.
reset	Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant.

Select() [18/18]

void CSeqdesc_Base::Select	(	E_Choice	index,
		EResetVariant	reset = eDoResetVariant
	)

Select the requested variant if needed.

Parameters

index	New selection state.
reset	Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant.

Referenced by CConvertComment::ApplyToComment(), CAddStructuredCommentKeyword::ApplyToCSeq_entry_genbank(), CApplyObject::CApplyObject(), CSeqdesc_Base::SetComment(), CSeqdesc_Base::SetCreate_date(), CSeqdesc_Base::SetDbxref(), CSeqdesc_Base::SetEmbl(), CSeqdesc_Base::SetGenbank(), CSeqdesc_Base::SetHet(), CSeqdesc_Base::SetMaploc(), CSeqdesc_Base::SetMethod(), CSeqdesc_Base::SetModelev(), CSeqdesc_Base::SetModif(), CSeqdesc_Base::SetMol_type(), CSeqdesc_Base::SetMolinfo(), CSeqdesc_Base::SetName(), CSeqdesc_Base::SetNum(), CSeqdesc_Base::SetOrg(), CSeqdesc_Base::SetPdb(), CSeqdesc_Base::SetPir(), CSeqdesc_Base::SetPrf(), CSeqdesc_Base::SetPub(), CSeqdesc_Base::SetRegion(), CSeqdesc_Base::SetSource(), CSeqdesc_Base::SetSp(), CSeqdesc_Base::SetTitle(), CSeqdesc_Base::SetUpdate_date(), CSeqdesc_Base::SetUser(), and CTable2AsnContext::SetUserObject().

SelectionName() [1/9]

NCBI_NS_STD::string CAnnot_id_Base::SelectionName ( E_Choice  index )

static

Retrieve selection name (for diagnostic purposes).

Parameters

index

One of possible selection states.

Returns

Name string.

Definition at line 102 of file Annot_id_.cpp.

References CAnnot_id_Base::sm_SelectionNames.

SelectionName() [2/9]

NCBI_NS_STD::string CAnnotdesc_Base::SelectionName ( E_Choice  index )

static

Retrieve selection name (for diagnostic purposes).

Parameters

index

One of possible selection states.

Returns

Name string.

Definition at line 134 of file Annotdesc_.cpp.

References CAnnotdesc_Base::sm_SelectionNames.

SelectionName() [3/9]

NCBI_NS_STD::string CDelta_seq_Base::SelectionName ( E_Choice  index )

static

Retrieve selection name (for diagnostic purposes).

Parameters

index

One of possible selection states.

Returns

Name string.

Definition at line 92 of file Delta_seq_.cpp.

References CDelta_seq_Base::sm_SelectionNames.

SelectionName() [4/9]

NCBI_NS_STD::string CNumbering_Base::SelectionName ( E_Choice  index )

static

Retrieve selection name (for diagnostic purposes).

Parameters

index

One of possible selection states.

Returns

Name string.

Definition at line 104 of file Numbering_.cpp.

References CNumbering_Base::sm_SelectionNames.

SelectionName() [5/9]

NCBI_NS_STD::string CSeq_annot_Base::C_Data::SelectionName ( E_Choice  index )

static

Retrieve selection name (for diagnostic purposes).

Parameters

index

One of possible selection states.

Returns

Name string.

Definition at line 143 of file Seq_annot_.cpp.

Referenced by CDataTrackUtils::DataType2TrackType(), CNAUtils::GetNATrackInfo(), and CNAUtils::x_ParseNAMetaData().

SelectionName() [6/9]

NCBI_NS_STD::string CSeq_data_Base::SelectionName ( E_Choice  index )

static

Retrieve selection name (for diagnostic purposes).

Parameters

index

One of possible selection states.

Returns

Name string.

Definition at line 156 of file Seq_data_.cpp.

References CSeq_data_Base::sm_SelectionNames.

Referenced by CSeqMap_I::GetSequence(), CBioseq::PackAsDeltaSeq(), and CSeqMap_I::SetSequence().

SelectionName() [7/9]

NCBI_NS_STD::string CSeq_ext_Base::SelectionName ( E_Choice  index )

static

Retrieve selection name (for diagnostic purposes).

Parameters

index

One of possible selection states.

Returns

Name string.

Definition at line 104 of file Seq_ext_.cpp.

References CSeq_ext_Base::sm_SelectionNames.

SelectionName() [8/9]

NCBI_NS_STD::string CSeq_hist_Base::C_Deleted::SelectionName ( E_Choice  index )

static

Retrieve selection name (for diagnostic purposes).

Parameters

index

One of possible selection states.

Returns

Name string.

Definition at line 92 of file Seq_hist_.cpp.

SelectionName() [9/9]

NCBI_NS_STD::string CSeqdesc_Base::SelectionName ( E_Choice  index )

static

Retrieve selection name (for diagnostic purposes).

Parameters

index

One of possible selection states.

Returns

Name string.

Definition at line 218 of file Seqdesc_.cpp.

References CSeqdesc_Base::sm_SelectionNames.

Referenced by CMacroEditorContext::CMacroEditorContext(), CDescTypeSubpanel::CreateControlsMiddle(), CSeqdesc::GetLabel(), and CMacroChoiceTypePanel::x_PopulateList().

Set() [1/6]

CAnnot_descr_Base::Tdata & CAnnot_descr_Base::Set ( void  )

inline

Assign a value to data member.

Returns

Reference to the data value.

Definition at line 170 of file Annot_descr_.hpp.

References CAnnot_descr_Base::m_data, and CAnnot_descr_Base::m_set_State.

Referenced by CSeq_annot::AddComment(), CSeq_annot::AddUserObject(), CAutogeneratedExtendedCleanup::ExtendedCleanupSeqAnnotDescr(), CFeatureTableReader_Imp::ReadSequinFeatureTable(), CSeq_annot::SetCreateDate(), CSeq_annot::SetNameDesc(), CSeq_annot::SetTitleDesc(), CSeq_annot::SetUpdateDate(), CTrackData::WriteToAnnot(), CAutogeneratedCleanup::x_BasicCleanupBioseqSet_annot_E_E_desc_ETC(), CTableAnnotDataSource::x_GetColumnMetaInfo(), and CReaderBase::xSetBrowserRegion().

Set() [2/6]

CDelta_ext_Base::Tdata & CDelta_ext_Base::Set ( void  )

inline

Assign a value to data member.

Returns

Reference to the data value.

Definition at line 170 of file Delta_ext_.hpp.

References CDelta_ext_Base::m_data, and CDelta_ext_Base::m_set_State.

Referenced by CDelta_ext::AddAndSplit(), AddLinkageEvidence(), CDelta_ext::AddLiteral(), CDelta_ext::AddSeqRange(), CFastaReader::AssembleSeq(), CGapsEditor::ConvertBioseqToDelta(), CGapsEditor::ConvertNs2Gaps(), CBlobSplitterImpl::CopySequence(), CModifySeqId::GetCommand(), CDelta_ext_PackTarget::NewSegment(), ResetLinkageEvidence(), SeqToDeltaSP(), SetLinkageType(), SetLinkageTypeLinkedRepeat(), SetLinkageTypeScaffold(), CAutogeneratedCleanup::x_BasicCleanupDeltaExt(), CContigItem::x_GatherInfo(), and CBioseq::x_SeqLoc_To_DeltaExt().

Set() [3/6]

CMap_ext_Base::Tdata & CMap_ext_Base::Set ( void  )

inline

Assign a value to data member.

Returns

Reference to the data value.

Definition at line 170 of file Map_ext_.hpp.

References CMap_ext_Base::m_data, and CMap_ext_Base::m_set_State.

Referenced by CModifySeqId::GetCommand(), and CAutogeneratedCleanup::x_BasicCleanupBioseq_inst_inst_ext_ext_map().

Set() [4/6]

CSeq_loc & CRef_ext_Base::Set ( void  )

inline

Definition at line 107 of file Ref_ext_.hpp.

Referenced by CModifySeqId::GetCommand().

Set() [5/6]

CSeg_ext_Base::Tdata & CSeg_ext_Base::Set ( void  )

inline

Assign a value to data member.

Returns

Reference to the data value.

Definition at line 170 of file Seg_ext_.hpp.

References CSeg_ext_Base::m_data, and CSeg_ext_Base::m_set_State.

Referenced by CModifySeqId::GetCommand(), s_AddPartToSegmentedBioseq(), and CAutogeneratedCleanup::x_BasicCleanupBioseqSet_seq_set_E_E_seq_seq_inst_inst_ext_ext_seg_ETC().

Set() [6/6]

CSeq_descr_Base::Tdata & CSeq_descr_Base::Set ( void  )

inline

Assign a value to data member.

Returns

Reference to the data value.

Definition at line 172 of file Seq_descr_.hpp.

References CSeq_descr_Base::m_data, and CSeq_descr_Base::m_set_State.

Referenced by AddCommentToBioseq(), AddMasterDescr(), CWGSDb_Impl::AddMasterDescr(), CCleanup::AddNcbiCleanupObject(), CBioseq_Base_Info::AddSeq_descr(), CBioseq_Base_Info::AddSeqdesc(), AddSeqdescToSeqDescr(), TaxTreeData::addTaxToBioseq(), CBlobSplitterImpl::AttachToSkeleton(), CDiscrepancyVisitorImpl< _Name >::Autofix(), CCleanup::BasicCleanup(), BioseqSetDescriptorPropagateDown(), CSequesterSets::BioseqSetDescriptorPropagateDown(), BioseqSetDescriptorPropagateUp(), CSequesterSets::BioseqSetDescriptorPropagateUp(), CheckSegPub(), CBlobSplitterImpl::CollectPieces(), CPhrap_Seq::CreateComplementedDescr(), CAlnVec::CreateConsensus(), CAutoAddDesc::Erase(), CAutoAddDesc::EraseDesc(), CSeqDBVol::GetBioseq(), GetFirstSegDescrChoice(), CSeqEntrySource::GetNext(), CTable2AsnContext::GetOrgRef(), GetSegPub(), GetSegSetDblink(), CWGSProteinIterator::GetSeq_descr(), GetSprotDescr(), CMultiReader::LoadDescriptors(), CWGSMasterDescrSetter::Loaded(), CBlobSplitterImpl::MakeID2Chunk(), CCleanup::MergeDupBioSources(), CCleanup::NormalizeDescriptorOrder(), CBiosampleChkApp::ProcessBioseqForUpdate(), CDUpdater::reformatBioseq(), CDUpdater::reformatBioseqByBlastDefline(), CDUpdater::RemoveBlastDefline(), RemoveDatesAfterFirst(), RemoveDescrByChoice(), CCleanup::RemoveDupBioSource(), CCleanup::RemoveDuplicatePubs(), RemoveEarlierDates(), CBioseq_Base_Info::RemoveSeqdesc(), CBioseq_Base_Info::ReplaceSeqdesc(), s_SetDBLinkDesc(), CAutoAddDesc::Set(), CDescrCache::SetComment(), CDescrCache::SetPubdesc(), CTable2AsnContext::SetUserObject(), SimplifyBioseqForCD(), SortSeqDescr(), SrchSegDescr(), sx_AddDescrBytes(), CAutogeneratedCleanup::x_BasicCleanupBioseq_descr(), CAutogeneratedCleanup::x_BasicCleanupBioseqSet_descr_ETC(), CPhrap_Read::x_CreateDesc(), CPhrapReader::x_CreateDesc(), CAutogeneratedExtendedCleanup::x_ExtendedCleanupSeqdescr(), CNewCleanup_imp::x_FixStructuredCommentKeywords(), CHugeAsnReader::x_GetTopLevelDescriptors(), CNewCleanup_imp::x_MoveNpPub(), CNewCleanup_imp::x_MoveNpSrc(), CPromote::x_PromoteCdregion(), CPromote::x_PromoteRna(), CBioseq_Base_Info::x_RealLoadDescr(), CNewCleanup_imp::x_RemoveUnseenTitles(), CDescrCache::x_SetDescriptor(), CNewCleanup_imp::x_SetMolInfoTechFromGenBankBlock(), seqsubmit_split::CSeqSubSplitter::xFlattenSeqEntry(), seqsubmit_split::CSeqSubSplitter::xMergeSeqDescr(), and CRemoteUpdater::xUpdatePubReferences().

SetA() [1/2]

void CNum_real_Base::SetA ( CNum_real_Base::TA  value )

inline

Assign a value to A data member.

Parameters

value

Value to assign

Definition at line 270 of file Num_real_.hpp.

References CNum_real_Base::m_A, CNum_real_Base::m_set_State, and rapidjson::value.

SetA() [2/2]

CNum_real_Base::TA & CNum_real_Base::SetA ( void  )

inline

Assign a value to A data member.

Returns

Reference to the data value.

Definition at line 277 of file Num_real_.hpp.

References CNum_real_Base::IsSetA(), CNum_real_Base::m_A, CNum_real_Base::m_set_State, and CSerialObject::UnassignedByte().

SetAccession() [1/3]

void CTextannot_id_Base::SetAccession ( const TAccession &  value )

inline

Assign a value to Accession data member.

Parameters

value

Value to assign

Definition at line 355 of file Textannot_id_.hpp.

References CTextannot_id_Base::m_Accession, CTextannot_id_Base::m_set_State, and rapidjson::value.

SetAccession() [2/3]

void CTextannot_id_Base::SetAccession ( CTextannot_id_Base::TAccession &&  value )

inline

Definition at line 362 of file Textannot_id_.hpp.

References CTextannot_id_Base::m_Accession, CTextannot_id_Base::m_set_State, and rapidjson::value.

SetAccession() [3/3]

CTextannot_id_Base::TAccession & CTextannot_id_Base::SetAccession ( void  )

inline

Assign a value to Accession data member.

Returns

Reference to the data value.

Definition at line 369 of file Textannot_id_.hpp.

References CTextannot_id_Base::IsSetAccession(), CTextannot_id_Base::m_Accession, CTextannot_id_Base::m_set_State, and CSerialObject::UnassignedString().

SetAlign() [1/3]

void CAnnotdesc_Base::SetAlign

(

CAnnotdesc_Base::TAlign &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 284 of file Annotdesc_.cpp.

References CObject::AddReference(), CAnnotdesc_Base::e_Align, CAnnotdesc_Base::m_choice, CAnnotdesc_Base::m_object, CAnnotdesc_Base::ResetSelection(), and rapidjson::value.

SetAlign() [2/3]

CAnnotdesc_Base::TAlign & CAnnotdesc_Base::SetAlign

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 278 of file Annotdesc_.cpp.

References CAnnotdesc_Base::e_Align, eDoNotResetVariant, CAnnotdesc_Base::m_object, and CAnnotdesc_Base::Select().

Referenced by MakeCompartment(), and CAutogeneratedCleanup::x_BasicCleanupBioseqSet_annot_E_E_desc_desc_E_ETC().

SetAlign() [3/3]

CSeq_annot_Base::C_Data::TAlign & CSeq_annot_Base::C_Data::SetAlign ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 648 of file Seq_annot_.hpp.

References eDoNotResetVariant.

Referenced by CAutogeneratedCleanup::x_BasicCleanupSeqAnnotData().

SetAlign_group() [1/2]

void CPubdesc_Base::SetAlign_group ( CPubdesc_Base::TAlign_group  value )

inline

Assign a value to Align_group data member.

Parameters

value

Value to assign

Definition at line 954 of file Pubdesc_.hpp.

References CPubdesc_Base::m_Align_group, CPubdesc_Base::m_set_State, and rapidjson::value.

SetAlign_group() [2/2]

CPubdesc_Base::TAlign_group & CPubdesc_Base::SetAlign_group ( void  )

inline

Assign a value to Align_group data member.

Returns

Reference to the data value.

Definition at line 961 of file Pubdesc_.hpp.

References CPubdesc_Base::IsSetAlign_group(), CPubdesc_Base::m_Align_group, CPubdesc_Base::m_set_State, and CSerialObject::UnassignedByte().

SetAlign_type() [1/2]

void CAlign_def_Base::SetAlign_type ( CAlign_def_Base::TAlign_type  value )

inline

Assign a value to Align_type data member.

Parameters

value

Value to assign

Definition at line 236 of file Align_def_.hpp.

References CAlign_def_Base::m_Align_type, CAlign_def_Base::m_set_State, and rapidjson::value.

Referenced by MakeCompartment().

SetAlign_type() [2/2]

CAlign_def_Base::TAlign_type & CAlign_def_Base::SetAlign_type ( void  )

inline

Assign a value to Align_type data member.

Returns

Reference to the data value.

Definition at line 243 of file Align_def_.hpp.

References CAlign_def_Base::IsSetAlign_type(), CAlign_def_Base::m_Align_type, CAlign_def_Base::m_set_State, and CSerialObject::UnassignedByte().

SetAligns() [1/2]

void CNum_ref_Base::SetAligns

(

CNum_ref_Base::TAligns &

value

)

Assign a value to Aligns data member.

Parameters

value

Reference to value.

Definition at line 66 of file Num_ref_.cpp.

References CNum_ref_Base::m_Aligns, and rapidjson::value.

Referenced by CAutogeneratedCleanup::x_BasicCleanupNumRef().

SetAligns() [2/2]

CNum_ref_Base::TAligns & CNum_ref_Base::SetAligns

(

void

)

Assign a value to Aligns data member.

Returns

Reference to the data value.

Definition at line 71 of file Num_ref_.cpp.

References CNum_ref_Base::m_Aligns.

SetAnnot()

CBioseq_Base::TAnnot & CBioseq_Base::SetAnnot ( void  )

inline

Assign a value to Annot data member.

Returns

Reference to the data value.

Definition at line 372 of file Bioseq_.hpp.

References CBioseq_Base::m_Annot, and CBioseq_Base::m_set_State.

Referenced by AddFeat(), AddFeatAnnotToSeqEntry(), CReadBlastApp::addLocation(), CFeatGapInfo::AdjustProteinSeq(), AdjustProtFeatForNucProtSet(), CForeignContaminationScreenReportReader::AnnotateOrRemove(), CSourceModParser::ApplyAllMods(), CAttachedHandles::Attach(), CAutogeneratedCleanup::BasicCleanupBioseq(), BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), BuildGoodSpliceNucProtSet(), ChangeId(), ChangeNucId(), CheckGene(), CBlobSplitterImpl::CopySkeleton(), CAutogeneratedExtendedCleanup::ExtendedCleanupBioseq(), FindGene(), CFeatureTableReader::FindOpenReadingFrame(), sequpd::FixCollidingIDs_Bioseq(), fta_create_imgt_misc_feat(), fta_fix_labels(), GetBioseqWithFootprintForNthRow(), GetCDSFromGenProdSet(), GetEmblDescr(), GetMasterBioseqWithFootprintOld(), GetmRNAFromGenProdSet(), GetProtFeatFromGoodNucProtSet(), GetProtRefAnnot(), CCSraShortReadIterator::GetShortBioseq(), GetSPAnnot(), CSraRun::GetSpotEntry(), LoadFeat(), CFastaObjectLoader::LoadFromStream(), MakeEntryForDeltaConversion(), MakeNucProtSet3Partial(), CBam2Seq_graph::MakeSeq_entry(), CFeatureTableReader::MoveRegionsToProteins(), CNewCleanup_imp::ProtSeqBC(), CConversionApp::Read(), CGff2Reader::ReadSeqEntry(), CFeature_table_reader::ReadSequinFeatureTables(), CDUpdater::reformatBioseq(), CFeatureTableReader::RemoveEmptyFtable(), CReadBlastApp::RemoveProblems(), RevComp(), CLocalFinderApp::Run(), s_AddAnnotsToBioseq(), s_AddGeneralAndLocal(), s_FixBioseqDeltas(), s_GetBioseqAnnot(), s_MakeNewMasterSeq(), s_UpdateFeatureIds(), SetNucProtSetProductName(), CReadBlastApp::StoreBlast(), CMytestApplication::TestFeatureGeneOverlap(), TestOneGapSeq(), objects::VisitAllFeatures(), CAnnotGetter::x_AddAnnotations(), SWGSCreateInfo::x_AddFeaturesDirect(), CPhrap_Read::x_CreateFeat(), CPhrap_Contig::x_CreateFeat(), CPhrap_Contig::x_CreateGraph(), CFeatureGenerator::SImplementation::x_CreateMrnaBioseq(), CFeatModApply::x_CreateSeqfeat(), CFeatModApply::x_FindSeqfeat(), CCSraAlignIterator::x_GetMatchEntry(), CNewCleanup_imp::x_MergeAdjacentFeatureTables(), CGFFReader::x_PlaceAlignment(), CGFFReader::x_PlaceFeature(), CSraInputSource::x_ReadOneSeq(), CNewCleanup_imp::x_RemoveEmptyFeatureTables(), CSplitDataLoader::x_SplitSeq(), XMLGetDescr(), CFeatureTableReader::xParseCdregions(), and CMultiReader::xReadASN1Text().

SetAscending() [1/2]

void CNum_cont_Base::SetAscending ( CNum_cont_Base::TAscending  value )

inline

Assign a value to Ascending data member.

Parameters

value

Value to assign

Definition at line 378 of file Num_cont_.hpp.

References CNum_cont_Base::m_Ascending, CNum_cont_Base::m_set_State, and rapidjson::value.

SetAscending() [2/2]

CNum_cont_Base::TAscending & CNum_cont_Base::SetAscending ( void  )

inline

Assign a value to Ascending data member.

Returns

Reference to the data value.

Definition at line 385 of file Num_cont_.hpp.

References CNum_cont_Base::IsSetAscending(), CNum_cont_Base::m_Ascending, CNum_cont_Base::m_set_State, and CSerialObject::UnassignedByte().

SetAssembly()

CSeq_hist_Base::TAssembly & CSeq_hist_Base::SetAssembly ( void  )

inline

Assign a value to Assembly data member.

Returns

Reference to the data value.

Definition at line 518 of file Seq_hist_.hpp.

References CSeq_hist_Base::m_Assembly, and CSeq_hist_Base::m_set_State.

Referenced by CModifySeqId::GetCommand(), CCreateSeqHistForTpa::GetCreateSeqHistFromTpaCommand(), and CAutogeneratedCleanup::x_BasicCleanupSeqHist().

SetB() [1/2]

void CNum_real_Base::SetB ( CNum_real_Base::TB  value )

inline

Assign a value to B data member.

Parameters

value

Value to assign

Definition at line 317 of file Num_real_.hpp.

References CNum_real_Base::m_B, CNum_real_Base::m_set_State, and rapidjson::value.

SetB() [2/2]

CNum_real_Base::TB & CNum_real_Base::SetB ( void  )

inline

Assign a value to B data member.

Returns

Reference to the data value.

Definition at line 324 of file Num_real_.hpp.

References CNum_real_Base::IsSetB(), CNum_real_Base::m_B, CNum_real_Base::m_set_State, and CSerialObject::UnassignedByte().

SetBiomol() [1/2]

void CMolInfo_Base::SetBiomol ( CMolInfo_Base::TBiomol  value )

inline

Assign a value to Biomol data member.

Parameters

value

Value to assign

Definition at line 453 of file MolInfo_.hpp.

References CMolInfo_Base::m_Biomol, CMolInfo_Base::m_set_State, and rapidjson::value.

Referenced by CCleanup::AddMissingMolInfo(), CCleanup::AddProtein(), AdjustProteinMolInfoToMatchCDS(), CMolInfoEditDlg::ApplyToMolInfo(), CFastaReaderEx::AssembleSeq(), CDiscrepancyVisitorImpl< _Name >::Autofix(), BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), BuildBigGoodNucProtSet(), BuildGoodNucProtSet(), BuildGoodSeq(), BuildNucProtSet(), BuildSequence(), CSequenceEditingEventHandler::ChangeToGenomicDna(), CCmdAddCDS::Execute(), GetGoodSeqEntryWithFeatureIds(), GetSprotDescr(), GetSynchronizeProductMolInfoCommand(), MakeProteinForGoodNucProtSet(), MakeProteinForNucProtSet(), MoveBiomolToTop(), RetranslateCdregion(), CEditingBtnsPanel::rRNAtoDNA(), CPrimeCacheApplication::Run(), SetBiomol(), SetCompleteness(), CCleanup::SetMolinfoBiomol(), CCleanup::SetMolinfoTech(), CMolInfoField::SetVal(), CEditingActionMolInfoMolecule::SetValue(), CCmdCreateCDS::x_AddMolinfoDescriptorToProtein(), CFeatureGenerator::SImplementation::x_CreateMrnaBioseq(), CFeatureGenerator::SImplementation::x_CreateProteinBioseq(), CPromote::x_MakeMolinfoDesc(), CNewCleanup_imp::x_SetPartialsForProtein(), CFeatureTableReader::xConvertSeqIntoSeqSet(), CFeatTableEdit::xGenerate_mRNA_Product(), and CFeatureTableReader::xTranslateProtein().

SetBiomol() [2/2]

CMolInfo_Base::TBiomol & CMolInfo_Base::SetBiomol ( void  )

inline

Assign a value to Biomol data member.

Returns

Reference to the data value.

Definition at line 460 of file MolInfo_.hpp.

References CMolInfo_Base::IsSetBiomol(), CMolInfo_Base::m_Biomol, CMolInfo_Base::m_set_State, and CSerialObject::UnassignedByte().

SetBool() [1/2]

void CSeq_hist_Base::C_Deleted::SetBool ( TBool  value )

inline

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 487 of file Seq_hist_.hpp.

References eDoNotResetVariant, and rapidjson::value.

SetBool() [2/2]

CSeq_hist_Base::C_Deleted::TBool & CSeq_hist_Base::C_Deleted::SetBool ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 480 of file Seq_hist_.hpp.

References eDoNotResetVariant.

SetComment() [1/7]

void CAnnotdesc_Base::SetComment

(

const TComment &

value

)

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 156 of file Annotdesc_.cpp.

References CAnnotdesc_Base::e_Comment, eDoNotResetVariant, CAnnotdesc_Base::m_string, CAnnotdesc_Base::Select(), and rapidjson::value.

SetComment() [2/7]

void CPubdesc_Base::SetComment ( const TComment &  value )

inline

Assign a value to Comment data member.

Parameters

value

Value to assign

Definition at line 994 of file Pubdesc_.hpp.

References CPubdesc_Base::m_Comment, CPubdesc_Base::m_set_State, and rapidjson::value.

Referenced by BOOST_AUTO_TEST_CASE(), CCleanupPub::CleanPubdesc(), CCleanup::ConvertPubFeatsToPubDescs(), fta_strip_er_remarks(), CFindASN1Dlg::ReplaceInPubdesc(), CRemarksAndSerialNumberPanel::TransferDataFromWindow(), CAutogeneratedCleanup::x_BasicCleanupSeqFeat_data_data_pub_ETC(), CAutogeneratedCleanup::x_BasicCleanupSeqFeatXrefPub(), and CAutogeneratedExtendedCleanup::x_ExtendedCleanupPubDesc().

SetComment() [3/7]

void CSeqdesc_Base::SetComment

(

const TComment &

value

)

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 262 of file Seqdesc_.cpp.

References CSeqdesc_Base::e_Comment, eDoNotResetVariant, CSeqdesc_Base::m_string, CSeqdesc_Base::Select(), and rapidjson::value.

SetComment() [4/7]

void CPubdesc_Base::SetComment ( CPubdesc_Base::TComment &&  value )

inline

Definition at line 1001 of file Pubdesc_.hpp.

References CPubdesc_Base::m_Comment, CPubdesc_Base::m_set_State, and rapidjson::value.

SetComment() [5/7]

CAnnotdesc_Base::TComment & CAnnotdesc_Base::SetComment ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 548 of file Annotdesc_.hpp.

References CAnnotdesc_Base::e_Comment, eDoNotResetVariant, CAnnotdesc_Base::m_string, and CAnnotdesc_Base::Select().

Referenced by CSeq_annot::AddComment(), CObjectLoadingTask::AddObjects(), CTableDataGBProject::GetStringValue(), CReadBlastApp::StoreBlast(), CMSAToolJob::x_AddTreeProjectItem(), CGBankLoadingJob::x_CreateProjectItems(), and CMSAToolJob::x_CreateProjectItems().

SetComment() [6/7]

CPubdesc_Base::TComment & CPubdesc_Base::SetComment ( void  )

inline

Assign a value to Comment data member.

Returns

Reference to the data value.

Definition at line 1008 of file Pubdesc_.hpp.

References CPubdesc_Base::IsSetComment(), CPubdesc_Base::m_Comment, CPubdesc_Base::m_set_State, and CSerialObject::UnassignedString().

SetComment() [7/7]

CSeqdesc_Base::TComment & CSeqdesc_Base::SetComment ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 1065 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Comment, eDoNotResetVariant, CSeqdesc_Base::m_string, and CSeqdesc_Base::Select().

Referenced by AddCommentToBioseq(), CEditingBtnsPanel::AnnotateDescriptorComment(), CConvertFeatToDescComment::apply(), CTable2AsnContext::ApplyComments(), CSourceModParser::ApplyMods(), CConvertComment::ApplyToCSeq_entry(), CDiscrepancyVisitorImpl< _Name >::Autofix(), BOOST_AUTO_TEST_CASE(), CCommentDescField::ClearVal(), CPhrap_Seq::CreateComplementedDescr(), CAlnVec::CreateConsensus(), CSequenceEditingEventHandler::CreateDescriptor(), CApplyIndexerComments::CreateNewComment(), CAddFluComments::CreateNewComment(), GetEmblDescr(), GetGenBankDescr(), CBioseqEditor::OnCreateDescriptor(), ParseSpComment(), CFindASN1Dlg::ReplaceInDesc(), CCommentDescField::SetVal(), CEditingActionDescCommentDescriptor::SetValue(), CAutogeneratedCleanup::x_BasicCleanupBioseq_descr_descr_E(), CAutogeneratedCleanup::x_BasicCleanupBioseqSetDesc(), CPhrap_Read::x_CreateDesc(), CPhrapReader::x_CreateDesc(), CPrimeCacheApplication::x_Process_Fasta(), and XMLGetDescr().

SetCompleteness() [1/2]

void CMolInfo_Base::SetCompleteness ( CMolInfo_Base::TCompleteness  value )

inline

Assign a value to Completeness data member.

Parameters

value

Value to assign

Definition at line 600 of file MolInfo_.hpp.

References CMolInfo_Base::m_Completeness, CMolInfo_Base::m_set_State, and rapidjson::value.

Referenced by AdjustProteinMolInfoToMatchCDS(), CMolInfoEditDlg::ApplyToMolInfo(), BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), CkNonTerSP(), CCmdAddCDS::Execute(), fta_set_molinfo_completeness(), GetSprotDescr(), MakeProteinForGoodNucProtSet(), RetranslateCdregion(), SetCompleteness(), SetMolinfoCompleteness(), SetMolInfoCompleteness(), SetMolinfoFromGIBBMod(), CMolInfoField::SetVal(), CEditingActionMolInfoCompletedness::SetValue(), CCmdCreateCDS::x_AddMolinfoDescriptorToProtein(), CFeatureGenerator::SImplementation::x_CreateMrnaBioseq(), CFeatureGenerator::SImplementation::x_CreateProteinBioseq(), and CNewCleanup_imp::x_SetPartialsForProtein().

SetCompleteness() [2/2]

CMolInfo_Base::TCompleteness & CMolInfo_Base::SetCompleteness ( void  )

inline

Assign a value to Completeness data member.

Returns

Reference to the data value.

Definition at line 607 of file MolInfo_.hpp.

References CMolInfo_Base::IsSetCompleteness(), CMolInfo_Base::m_Completeness, CMolInfo_Base::m_set_State, and CSerialObject::UnassignedByte().

SetCont() [1/2]

void CNumbering_Base::SetCont

(

CNumbering_Base::TCont &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 126 of file Numbering_.cpp.

References CObject::AddReference(), CNumbering_Base::e_Cont, CNumbering_Base::m_choice, CNumbering_Base::m_object, CNumbering_Base::ResetSelection(), and rapidjson::value.

SetCont() [2/2]

CNumbering_Base::TCont & CNumbering_Base::SetCont

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 120 of file Numbering_.cpp.

References CNumbering_Base::e_Cont, eDoNotResetVariant, CNumbering_Base::m_object, and CNumbering_Base::Select().

SetCreate_date() [1/4]

void CAnnotdesc_Base::SetCreate_date

(

CAnnotdesc_Base::TCreate_date &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 218 of file Annotdesc_.cpp.

References CObject::AddReference(), CAnnotdesc_Base::e_Create_date, CAnnotdesc_Base::m_choice, CAnnotdesc_Base::m_object, CAnnotdesc_Base::ResetSelection(), and rapidjson::value.

SetCreate_date() [2/4]

void CSeqdesc_Base::SetCreate_date

(

CSeqdesc_Base::TCreate_date &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 484 of file Seqdesc_.cpp.

References CObject::AddReference(), CSeqdesc_Base::e_Create_date, CSeqdesc_Base::m_choice, CSeqdesc_Base::m_object, CSeqdesc_Base::ResetSelection(), and rapidjson::value.

SetCreate_date() [3/4]

CAnnotdesc_Base::TCreate_date & CAnnotdesc_Base::SetCreate_date

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 212 of file Annotdesc_.cpp.

References CAnnotdesc_Base::e_Create_date, eDoNotResetVariant, CAnnotdesc_Base::m_object, and CAnnotdesc_Base::Select().

Referenced by CSeq_annot::SetCreateDate(), CProjectItem::SetCreateDate(), CAutogeneratedCleanup::x_BasicCleanupBioseqSet_annot_E_E_desc_desc_E_ETC(), and CCreateNeedlemanWunschJob::x_CreateProjectItems().

SetCreate_date() [4/4]

CSeqdesc_Base::TCreate_date & CSeqdesc_Base::SetCreate_date

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 478 of file Seqdesc_.cpp.

References CSeqdesc_Base::e_Create_date, eDoNotResetVariant, CSeqdesc_Base::m_object, and CSeqdesc_Base::Select().

Referenced by CFastaReaderEx::AssembleSeq(), BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), CSourceModParserWrapper::ExtractTitleAndApplyAllMods(), GetEmblDescr(), GetSprotDescr(), CAutogeneratedCleanup::x_BasicCleanupBioseq_descr_descr_E(), CAutogeneratedCleanup::x_BasicCleanupBioseqSetDesc(), CPhrap_Read::x_CreateDesc(), CAgpConverter::x_SetCreateAndUpdateDatesToToday(), and XMLGetDescr().

SetData() [1/2]

void CSeq_annot_Base::SetData

(

CSeq_annot_Base::TData &

value

)

Assign a value to Data data member.

Parameters

value

Reference to value.

Definition at line 244 of file Seq_annot_.cpp.

References CSeq_annot_Base::m_Data, CRef< C, Locker >::Reset(), and rapidjson::value.

Referenced by SSeqTableConverter::Add(), AddFeat(), AddFeatureToBioseq(), AddGoodSourceFeature(), Sequence::AddMMDBAnnotTag(), AlignmentCollection::addPendingAlignment(), CGBProjectHelper::AddProjectItemsFromRID(), CTableAnnotDataSource::AddSeqLoc(), CTableAnnotDataSource::AddSnpSeqLoc(), AddSpanningSentinelFeat(), subfuse::CSubmissionCollector::AdjustLocalIds(), CVariationNormalization::AlterToDelIns(), CForeignContaminationScreenReportReader::AnnotateOrRemove(), CUpdateAlign::apply(), CApplyObject::ApplyChange(), CAttachedHandles::Attach(), CAutogeneratedCleanup::BasicCleanupSeqAnnot(), BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), BuildAlignmentWithInternalGap(), BuildGoodEcoSetWithAlign(), BuildGoodGraphAnnot(), BuildProtBioseqSet(), ChangeId(), ChangeProductId(), CheckFeatSeqLoc(), CheckGene(), CFeatureGenerator::SImplementation::ConvertMixedAlignToAnnot(), CTableImportDataSource::ConvertToSeqAnnot(), CVariationUtilities::CorrectRefAllele(), CEntrezDB::CreateAnnot_Nuc_Prot(), CTableAnnotDataSource::CreateFeature(), AlignmentSet::CreateFromMultiple(), CPhrap_Seq::CreatePadsFeat(), CBlastFormatUtil::CreateSeqAnnotFromSeqAlignSet(), CTableAnnotDataSource::CreateSnpFeature(), CTableAnnotDataSource::CreateSnps(), CSourceFeatureItem::CSourceFeatureItem(), DemoteCDSToNucSeq(), CAddFeatChecker::Do(), CMAViewManager::DoTransition(), CWig2tableApplication::DumpChromValues(), CAnnotationASN1::CImplementationData::DumpEvidence(), CCdCore::EraseOtherRows(), EraseRow(), CCmdPromoteCDS::Execute(), CCreateCoverageTask::Execute(), CAutogeneratedExtendedCleanup::ExtendedCleanupSeqAnnot(), CGff3AnnotAssembler::FinalizeAnnot(), CTableAnnotDataSource::FindLocations(), fta_create_imgt_misc_feat(), CFileLoadAligner::GenerateAlignments(), CSnpTrack::GenerateAsn1(), CFeatureTrack::GenerateAsn1(), CGeneModelTrack::GenerateAsn1(), SSeqTableContent::GetAnnot(), CVDBGraphSeqIterator::GetAnnot(), GetBioseqWithFootprintForNthRow(), CLDS2_DataLoader::GetChunk(), CSNPDbSeqIterator::GetCoverageAnnot(), CCSraRefSeqIterator::GetCoverageAnnot(), CSNPDbSeqIterator::GetFeatAnnot(), GetMasterBioseqWithFootprintOld(), CSNPDbSeqIterator::GetOverviewAnnot(), GetPackedFeatAnnot(), GetProtRefAnnot(), CAlnReader::GetSeqEntry(), GetSPAnnot(), CSraRun::GetSpotEntry(), CAlignGroup::GroupByLikeTaxIds(), CAlignGroup::GroupBySeqIds(), CAlignGroup::GroupBySequenceType(), CAlignGroup::GroupByStrand(), CAlignGroup::GroupByTaxIds(), CFeatAnnotAssembler::InitializeAnnot(), CBamRefSeqInfo::LoadAlignChunk(), CFastaObjectLoader::LoadAlignsFromStream(), CCSRARefSeqInfo::LoadAnnotMainChunk(), LoadFeat(), CFastaObjectLoader::LoadFromStream(), CAsnObjectLoader::LoadFromStream(), CTextAlignObjectLoader::LoadFromStream(), CBamRefSeqInfo::LoadPileupChunk(), CCSRAFileInfo::LoadReadsBlob(), CSeqAnnotFromFasta::MakeAsIsSeqAnnot(), CMakeCdrProds::MakeCdrProds(), COrf::MakeCDSAnnot(), MakeEntryForDeltaConversion(), CBamIndex::MakeEstimatedCoverageAnnot(), CWig2tableApplication::MakeGraphAnnot(), CSeqAnnotFromFasta::MakeIBMSeqAnnot(), CBlobSplitterImpl::MakeSeq_annot(), CCSraRefSeqIterator::MakeSeq_annot(), CBam2Seq_graph::MakeSeq_annot(), CSeqAnnotFromFasta::MakeSeqAnnotFromFasta(), CWig2tableApplication::MakeTableAnnot(), CSeq_loc_Mapper_Base::Map(), CCdsToMatPeptide::MergeConvert(), CFeatTableEdit::MergeFeatures(), CFeatureTableReader::MoveRegionsToProteins(), C5ColAnnotAssembler::ProcessRecord(), CBedAnnotAssembler::ProcessRecord(), CAlignProjectItemExtension::ProjectItemAttached(), PromoteCDSToNucProtSet(), CGlimmerReader::Read(), CGFFReader::Read(), CHgvsReader::ReadSeqAnnot(), CUCSCRegionReader::ReadSeqAnnot(), CRepeatMaskerReader::ReadSeqAnnot(), CFeatureTableReader_Imp::ReadSequinFeatureTable(), CDUpdater::reformatBioseq(), CTableAnnotDataSource::RemoveSeqLocs(), CDiscrepancyContext::ReplaceSeq_feat(), CAnnotationASN1::CImplementationData::ResetASN1(), CGffExportJob::Run(), CGtfExportJob::Run(), CDemoContigAssemblyApp::Run(), CTestCompartApplication::Run(), CLocalFinderApp::Run(), CDemoApp::Run(), s_AddSitesToAnnot(), s_Align2Annot(), CUpdateSeq_Input::s_Align2IdenticalSeq(), s_AlignSet2Annot(), s_DivvyUpAlignments_ProcessAnnot(), s_GetMappedFeat(), s_MakeNewMasterSeq(), s_UpdateFeatureIds(), UpdateViewer::SaveAlignments(), SetDenDiagSet(), SrchCdRegion(), CReadBlastApp::StoreBlast(), TestFeatInsideGap(), CMytestApplication::TestFeatureGeneOverlap(), TestOneGapSeq(), CCmdPromoteCDS::Unexecute(), CPhrap_Contig::x_AddBaseSegFeats(), SWGSCreateInfo::x_AddFeatures(), SWGSCreateInfo::x_AddFeaturesDirect(), CFastaReader::x_AddMultiwayAlignment(), CFastaReader::x_AddPairwiseAlignments(), CPromote::x_AddProtFeature(), CPhrap_Read::x_AddQualityFeat(), CPhrap_Contig::x_AddReadLocFeats(), CPhrap_Read::x_AddTagFeats(), CPhrap_Contig::x_AddTagFeats(), CSequenceUpdater::x_AttachFeaturesToNewSeq(), CAutogeneratedCleanup::x_BasicCleanupSeqSubmit_data_annots_E(), CFeatureGenerator::SImplementation::x_CopyAdditionalFeatures(), CPromote::x_CopyCdregionToRNA(), CPhrap_Contig::x_CreateAlignAll(), CPhrap_Contig::x_CreateAlignOptimized(), CPhrap_Contig::x_CreateAlignPairs(), CWGSSeqIterator::x_CreateFeaturesChunk(), CGFFReader::x_CreateGeneFeatures(), CFeatureTableReader_Imp::x_CreateGenesFromCDSs(), CPhrap_Contig::x_CreateGraph(), CFeatureGenerator::SImplementation::x_CreateMrnaBioseq(), CProSplignJob::x_CreateOneProjectItem(), CGBankLoadingJob::x_CreateProjectItems(), CBLASTSeqToolJob::x_CreateProjectItems(), CGroupAlignmentsJob::x_CreateProjectItems(), CMSAToolJob::x_CreateProjectItems(), CNGAlignJob::x_CreateProjectItems(), CAdvancedCleanupJob::x_CreateProjectItems(), CCreateNeedlemanWunschJob::x_CreateProjectItems(), CFindOverlapJob::x_CreateProjectItems(), CSplignJob::x_CreateProjectItems(), CWindowMaskerJob::x_CreateProjectItems(), CCpgSearchJob::x_DoSearch(), CAppHitFilter::x_DumpOutput(), CSequenceUpdater::x_FuseProtFeatsForCDS(), CCreateGeneModelTask::x_GetCommand(), CAnnotGetter::x_GetCompleteSeqAnnot(), CCSraAlignIterator::x_GetMatchAnnot(), CBamAlignIterator::x_GetMatchEntry(), CWGSSeqIterator::x_GetQualityAnnot(), CCSraAlignIterator::x_GetQualityGraphAnnot(), CCSraShortReadIterator::x_GetQualityGraphAnnot(), CBamAlignIterator::x_GetSeq_annot(), CCSraRefSeqIterator::x_GetSeq_annot(), CCSraShortReadIterator::x_GetSeq_annot(), CSequenceUpdater::x_GetSeqAnnot_WithoutCDS(), CCreateGeneModelTask::x_Group_By_GeneID(), CIdMapperTestApp::x_HandleFeatures(), CAppHitFilter::x_LoadConstraints(), CMultiAlignView::x_MergeObjects(), CGFFReader::x_PlaceAlignment(), CGFFReader::x_PlaceFeature(), CGff2Reader::x_ProcessAlignmentsGff(), CXcompareAnnotsApplication::x_ProcessSeqAlignSetFromFile(), CPromote::x_PromoteFeatures(), CNewCleanup_imp::x_RemoveEmptyFeatures(), CVariationNormalization_base< T >::x_Shift(), CGff2Reader::x_UpdateAnnotAlignment(), CModifySeqId::x_UpdateSeqAnnot(), CGff2Reader::xAddFeatureToAnnot(), CGff3Reader::xAddFeatureToAnnot(), CGtfAnnotAssembler::xAnnotAddFeature(), CBedReader::xAppendFeatureBlock(), CBedReader::xAppendFeatureCds(), CBedReader::xAppendFeatureChrom(), CBedReader::xAppendFeatureGene(), CBedReader::xAppendFeatureRna(), CBedReader::xAppendFeatureThick(), CMicroArrayReader::xCreateSeqAnnot(), CVcfReader::xCreateSeqAnnot(), CWiggleReader::xDumpChromValues(), CGff2Reader::xGenerateParentChildXrefs(), CGvfReader::xMergeRecord(), CFeatureTableReader::xParseCdregions(), CUCSCRegionReader::xParseFeature(), CBedReader::xParseFeatureAutoSql(), CBedReader::xParseFeatureUserFormat(), CWiggleReader::xPostProcessAnnot(), CGff3Reader::xProcessAlignmentData(), CPslReader::xProcessData(), CVcfReader::xProcessDataLine(), CMicroArrayReader::xProcessFeature(), CGff3AnnotAssembler::xProcessFeatureCds(), CGff3AnnotAssembler::xProcessFeatureDefault(), and CGff3AnnotAssembler::xProcessFeatureRna().

SetData() [2/2]

CSeq_annot_Base::TData & CSeq_annot_Base::SetData ( void  )

inline

Assign a value to Data data member.

Returns

Reference to the data value.

Definition at line 882 of file Seq_annot_.hpp.

References CSeq_annot_Base::m_Data, and CSeq_annot_Base::ResetData().

SetDate() [1/4]

void CSeq_hist_Base::C_Deleted::SetDate

(

TDate &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 114 of file Seq_hist_.cpp.

References CObject::AddReference(), and rapidjson::value.

SetDate() [2/4]

void CSeq_hist_rec_Base::SetDate

(

CSeq_hist_rec_Base::TDate &

value

)

Assign a value to Date data member.

Parameters

value

Reference to value.

Definition at line 57 of file Seq_hist_rec_.cpp.

References CSeq_hist_rec_Base::m_Date, and rapidjson::value.

Referenced by CAutogeneratedCleanup::x_BasicCleanupSeqHistRec().

SetDate() [3/4]

CSeq_hist_Base::C_Deleted::TDate & CSeq_hist_Base::C_Deleted::SetDate

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 108 of file Seq_hist_.cpp.

References eDoNotResetVariant.

Referenced by CAutogeneratedCleanup::x_BasicCleanupSeqHistDeleted().

SetDate() [4/4]

CSeq_hist_rec_Base::TDate & CSeq_hist_rec_Base::SetDate

(

void

)

Assign a value to Date data member.

Returns

Reference to the data value.

Definition at line 62 of file Seq_hist_rec_.cpp.

References CSeq_hist_rec_Base::m_Date.

SetDb() [1/2]

void CSeq_annot_Base::SetDb ( CSeq_annot_Base::TDb  value )

inline

Assign a value to Db data member.

Parameters

value

Value to assign

Definition at line 774 of file Seq_annot_.hpp.

References CSeq_annot_Base::m_Db, CSeq_annot_Base::m_set_State, and rapidjson::value.

Referenced by CBlobSplitterImpl::MakeSeq_annot(), and CAnnotGetter::x_GetCompleteSeqAnnot().

SetDb() [2/2]

CSeq_annot_Base::TDb & CSeq_annot_Base::SetDb ( void  )

inline

Assign a value to Db data member.

Returns

Reference to the data value.

Definition at line 781 of file Seq_annot_.hpp.

References CSeq_annot_Base::IsSetDb(), CSeq_annot_Base::m_Db, CSeq_annot_Base::m_set_State, and CSerialObject::UnassignedByte().

SetDbxref() [1/2]

void CSeqdesc_Base::SetDbxref

(

CSeqdesc_Base::TDbxref &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 440 of file Seqdesc_.cpp.

References CObject::AddReference(), CSeqdesc_Base::e_Dbxref, CSeqdesc_Base::m_choice, CSeqdesc_Base::m_object, CSeqdesc_Base::ResetSelection(), and rapidjson::value.

SetDbxref() [2/2]

CSeqdesc_Base::TDbxref & CSeqdesc_Base::SetDbxref

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 434 of file Seqdesc_.cpp.

References CSeqdesc_Base::e_Dbxref, eDoNotResetVariant, CSeqdesc_Base::m_object, and CSeqdesc_Base::Select().

SetDefaultAscending()

void CNum_cont_Base::SetDefaultAscending ( void  )

inline

Assign default value to Ascending data member.

Definition at line 366 of file Num_cont_.hpp.

References CNum_cont_Base::ResetAscending().

SetDefaultBiomol()

void CMolInfo_Base::SetDefaultBiomol ( void  )

inline

Assign default value to Biomol data member.

Definition at line 441 of file MolInfo_.hpp.

References CMolInfo_Base::ResetBiomol().

SetDefaultCompleteness()

void CMolInfo_Base::SetDefaultCompleteness ( void  )

inline

Assign default value to Completeness data member.

Definition at line 588 of file MolInfo_.hpp.

References CMolInfo_Base::ResetCompleteness().

Referenced by AdjustProteinMolInfoToMatchCDS().

SetDefaultHas_zero()

void CNum_cont_Base::SetDefaultHas_zero ( void  )

inline

Assign default value to Has_zero data member.

Definition at line 316 of file Num_cont_.hpp.

References CNum_cont_Base::ResetHas_zero().

SetDefaultRefnum()

void CNum_cont_Base::SetDefaultRefnum ( void  )

inline

Assign default value to Refnum data member.

Definition at line 266 of file Num_cont_.hpp.

References CNum_cont_Base::ResetRefnum().

SetDefaultReftype()

void CPubdesc_Base::SetDefaultReftype ( void  )

inline

Assign default value to Reftype data member.

Definition at line 1039 of file Pubdesc_.hpp.

References CPubdesc_Base::ResetReftype().

SetDefaultTech()

void CMolInfo_Base::SetDefaultTech ( void  )

inline

Assign default value to Tech data member.

Definition at line 491 of file MolInfo_.hpp.

References CMolInfo_Base::ResetTech().

SetDefaultTopology()

void CSeq_inst_Base::SetDefaultTopology ( void  )

inline

Assign default value to Topology data member.

Definition at line 727 of file Seq_inst_.hpp.

References CSeq_inst_Base::ResetTopology().

SetDeleted() [1/2]

void CSeq_hist_Base::SetDeleted

(

CSeq_hist_Base::TDeleted &

value

)

Assign a value to Deleted data member.

Parameters

value

Reference to value.

Definition at line 196 of file Seq_hist_.cpp.

References CSeq_hist_Base::m_Deleted, and rapidjson::value.

Referenced by CAutogeneratedCleanup::x_BasicCleanupSeqHist().

SetDeleted() [2/2]

CSeq_hist_Base::TDeleted & CSeq_hist_Base::SetDeleted

(

void

)

Assign a value to Deleted data member.

Returns

Reference to the data value.

Definition at line 201 of file Seq_hist_.cpp.

References CSeq_hist_Base::m_Deleted.

SetDelta() [1/2]

void CSeq_ext_Base::SetDelta

(

CSeq_ext_Base::TDelta &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 192 of file Seq_ext_.cpp.

References CObject::AddReference(), CSeq_ext_Base::e_Delta, CSeq_ext_Base::m_choice, CSeq_ext_Base::m_object, CSeq_ext_Base::ResetSelection(), and rapidjson::value.

SetDelta() [2/2]

CSeq_ext_Base::TDelta & CSeq_ext_Base::SetDelta

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 186 of file Seq_ext_.cpp.

References CSeq_ext_Base::e_Delta, eDoNotResetVariant, CSeq_ext_Base::m_object, and CSeq_ext_Base::Select().

Referenced by AddLinkageEvidence(), CModifySeqId::GetCommand(), ResetLinkageEvidence(), SetLinkageType(), SetLinkageTypeLinkedRepeat(), SetLinkageTypeScaffold(), CAutogeneratedCleanup::x_BasicCleanupSeqExt(), and CContigItem::x_GatherInfo().

SetDesc() [1/2]

void CSeq_annot_Base::SetDesc

(

CSeq_annot_Base::TDesc &

value

)

Assign a value to Desc data member.

Parameters

value

Reference to value.

Definition at line 223 of file Seq_annot_.cpp.

References CSeq_annot_Base::m_Desc, and rapidjson::value.

Referenced by CGBDocument::AddItems(), CAutogeneratedCleanup::BasicCleanupSeqAnnot(), BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), CTableImportDataSource::ConvertToSeqAnnot(), CTableAnnotDataSource::CreateSnps(), CAutogeneratedExtendedCleanup::ExtendedCleanupSeqAnnot(), CBedAnnotAssembler::FinalizeAnnot(), FormatAsAsn(), CVDBGraphSeqIterator::GetAnnot(), CFindRSites::GetAnnot(), CCSRARefSeqInfo::LoadAnnotMainChunk(), CBamRefSeqInfo::LoadPileupChunk(), CWig2tableApplication::MakeAnnot(), CCSraAlignIterator::MakeEmptyMatchAnnot(), CBlobSplitterImpl::MakeSeq_annot(), CCSraRefSeqIterator::MakeSeq_annot(), CBam2Seq_graph::MakeSeq_annot(), CMicroArrayReader::ReadSeqAnnot(), CUCSCRegionReader::ReadSeqAnnot(), CFeatureTableReader_Imp::ReadSequinFeatureTable(), CAnnotationASN1::CImplementationData::ResetASN1(), CDemoContigAssemblyApp::Run(), CUpdateSeq_Input::s_Align2IdenticalSeq(), CReadBlastApp::StoreBlast(), sx_SetTitle(), sx_SetZoomLevel(), CBamUtils::UpdateCoverageGraphInfo(), CTrackData::WriteToAnnot(), CAutogeneratedCleanup::x_BasicCleanupSeqSubmit_data_annots_E(), CGBankLoadingJob::x_CreateProjectItems(), CCreateNeedlemanWunschJob::x_CreateProjectItems(), CTableAnnotDataSource::x_GetColumnMetaInfo(), CAnnotGetter::x_GetCompleteSeqAnnot(), CCSraAlignIterator::x_GetEmptyMatchAnnot(), CWGSSeqIterator::x_GetQualityAnnot(), CBamAlignIterator::x_GetSeq_annot(), CCSraRefSeqIterator::x_GetSeq_annot(), CCSraShortReadIterator::x_GetSeq_annot(), CGff2Reader::x_ProcessAlignmentsGff(), CReaderBase::xAddConversionInfo(), CBedReader::xAssignBedColumnCount(), CVcfReader::xAssignVcfMeta(), CBedReader::xCreateSeqAnnot(), CMicroArrayReader::xCreateSeqAnnot(), CReaderBase::xParseBrowserLine(), CGvfReader::xPostProcessAnnot(), and CGff3Reader::xProcessAlignmentData().

SetDesc() [2/2]

CSeq_annot_Base::TDesc & CSeq_annot_Base::SetDesc

(

void

)

Assign a value to Desc data member.

Returns

Reference to the data value.

Definition at line 228 of file Seq_annot_.cpp.

References CSeq_annot_Base::m_Desc.

Referenced by CSeq_annot::AddComment(), CSeq_annot::AddUserObject(), CSeq_annot::SetCreateDate(), CSeq_annot::SetNameDesc(), CSeq_annot::SetTitleDesc(), and CSeq_annot::SetUpdateDate().

SetDescr() [1/2]

void CBioseq_Base::SetDescr

(

CBioseq_Base::TDescr &

value

)

Assign a value to Descr data member.

Parameters

value

Reference to value.

Definition at line 65 of file Bioseq_.cpp.

References CBioseq_Base::m_Descr, and rapidjson::value.

Referenced by AddCommentToBioseq(), CWGSAsnBinData::AddDescr(), AddGenbankKeyword(), AddGoodPub(), AddGoodSource(), AddLocalIdUserObjects(), CCleanup::AddMissingMolInfo(), CNewCleanup_imp::AddMolInfo(), CCleanup::AddPartialToProteinTitle(), CCleanup::AddProtein(), AddRefGeneTrackingUserObject(), AddSeqdescToBioseq(), AddSource(), TaxTreeData::addTaxToBioseq(), AddTitle(), AddTpaAssemblyUserObject(), CFeatGapInfo::AdjustProteinSeq(), CSourceModParser::ApplyAllMods(), CSourceModParser::ApplyMods(), CAutogeneratedCleanup::BasicCleanupBioseq(), BldProtRefSeqEntry(), BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), BuildBigGoodNucProtSet(), BuildGoodNucProtSet(), BuildGoodProtSeq(), BuildGoodSeq(), BuildNucProtSet(), BuildSequence(), CkNonTerSP(), ClearFocus(), CFeatureGenerator::SImplementation::ConvertMixedAlignToAnnot(), CopyOrg(), CBlobSplitterImpl::CopySkeleton(), CVDBBlastUtil::CreateBioseqFromOid(), CVDBBlastUtil::CreateBioseqFromVDBSeqId(), CAlnVec::CreateConsensus(), CChangeSeqdescTitleCommand::Execute(), CAutogeneratedExtendedCleanup::ExtendedCleanupBioseq(), FakeEmblBioSources(), FakeGenBankBioSources(), fta_create_far_fetch_policy_user_object(), fta_get_user_object(), fta_remove_cleanup_user_object(), fta_set_molinfo_completeness(), CAutoAddDBLink::Get(), CSeqDBVol::GetBioseq(), GetBioseq(), GetDescrSPBlock(), GetEmblDescr(), GetFirstSegDescrChoice(), GetGenBankDescr(), GetGoodSeqEntryWithFeatureIds(), CWGSDb_Impl::GetMasterSeq_entry(), CSeqEntrySource::GetNext(), CCSraRefSeqIterator::GetRefBioseq(), GetSegPub(), CCSraShortReadIterator::GetShortBioseq(), CCSraAlignIterator::GetShortBioseq(), CSraRun::GetSpotEntry(), GetSprotDescr(), GetSPSegLocInfo(), CCdFromFasta::ImportAlignmentData(), LoadFeat(), CMakeCdrProds::MakeCdrProds(), MakeProteinForGoodNucProtSet(), MakeProteinForNucProtSet(), PssmMaker::modifyQuery(), MoveBiomolToTop(), CReadBlastApp::NormalizeSeqentry(), CApplyMods::operator()(), CFastaReader::ParseDefLine(), CRemoteUpdater::PostProcessPubs(), CNewCleanup_imp::ProtSeqBC(), CDUpdater::reformatBioseq(), CDUpdater::reformatBioseqByBlastDefline(), CNewCleanup_imp::RemoveBadProteinTitle(), CDUpdater::RemoveBlastDefline(), RemoveDbxref(), ResetOrgname(), CAgpconvertApplication::Run(), s_AddBiomol(), s_AddSeqTitleToPssm(), s_ApplyPubMods(), s_ArePrimersUnique(), s_FixBioseqDeltas(), s_ReplaceCtrlAsInTitle(), s_SetDBLinkDesc(), s_SetSeqdescUser(), SeqLocToBioseq(), CSeqUtils::SeqLocToBioseq(), SetBiomol(), SetChromosome(), SetCommon(), SetCompleteness(), SetDbxref(), CSeq_entry::SetDescr(), SetDiv(), SetFocus(), SetGcode(), SetGenome(), SetLineage(), SetMGcode(), SetOrgMod(), SetOrigin(), SetPGcode(), SetRefGeneTrackingStatus(), SetSubSource(), SetTaxname(), SetTaxon(), SetTech(), SetTitle(), SetTransgenic(), SimplifyBioseqForCD(), TestOneReplicon(), TestOneStrain(), CChangeSeqdescTitleCommand::Unexecute(), CTable2AsnContext::UpdateTaxonFromTable(), SWGSCreateInfo::x_AddDescr(), CAlnReader::x_AddTitle(), CFastaReader::x_ApplyMods(), CNewCleanup_imp::x_CleanupGenbankBlock(), CPhrap_Read::x_CreateDesc(), CPhrap_Contig::x_CreateDesc(), CFeatureGenerator::SImplementation::x_CreateMrnaBioseq(), CFeatureGenerator::SImplementation::x_CreateProteinBioseq(), CAgpconvertApplication::x_LoadTemplate(), CMacroFunction_SetStructCommDb::x_MakeNewStructuredComment(), CPrimeCacheApplication::x_Process_Fasta(), CShortReadFastaInputSource::x_ReadFastaOneSeq(), CGFFReader::x_ReadFastaSequences(), CShortReadFastaInputSource::x_ReadFastc(), CShortReadFastaInputSource::x_ReadFastqOneSeq(), CASN1InputSourceOMF::x_ReadFromSingleFile(), CASN1InputSourceOMF::x_ReadFromTwoFiles(), CSraInputSource::x_ReadPairs(), CNewCleanup_imp::x_RemovePopPhyBioSource(), CNewCleanup_imp::x_RemovePub(), CNewCleanup_imp::x_RescueMolInfo(), CAgpConverter::x_SetCreateAndUpdateDatesToToday(), CNewCleanup_imp::x_SetPartialsForProtein(), CSplitDataLoader::x_SplitSeq(), CFeatureTableReader::xConvertSeqIntoSeqSet(), seqsubmit_split::CSeqSubSplitter::xFlattenSeqEntry(), CFeatTableEdit::xGenerate_mRNA_Product(), XMLFakeBioSources(), XMLGetDescr(), and CFeatureTableReader::xTranslateProtein().

SetDescr() [2/2]

CBioseq_Base::TDescr & CBioseq_Base::SetDescr

(

void

)

Assign a value to Descr data member.

Returns

Reference to the data value.

Definition at line 70 of file Bioseq_.cpp.

References CBioseq_Base::m_Descr.

SetEmbl() [1/2]

void CSeqdesc_Base::SetEmbl

(

CSeqdesc_Base::TEmbl &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 462 of file Seqdesc_.cpp.

References CObject::AddReference(), CSeqdesc_Base::e_Embl, CSeqdesc_Base::m_choice, CSeqdesc_Base::m_object, CSeqdesc_Base::ResetSelection(), and rapidjson::value.

SetEmbl() [2/2]

CSeqdesc_Base::TEmbl & CSeqdesc_Base::SetEmbl

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 456 of file Seqdesc_.cpp.

References CSeqdesc_Base::e_Embl, eDoNotResetVariant, CSeqdesc_Base::m_object, and CSeqdesc_Base::Select().

Referenced by BOOST_FIXTURE_TEST_CASE(), GetEmblDescr(), CAutogeneratedCleanup::x_BasicCleanupBioseq_descr_descr_E(), CAutogeneratedCleanup::x_BasicCleanupBioseqSetDesc(), and XMLGetDescr().

SetEnum() [1/2]

void CNumbering_Base::SetEnum

(

CNumbering_Base::TEnum &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 148 of file Numbering_.cpp.

References CObject::AddReference(), CNumbering_Base::e_Enum, CNumbering_Base::m_choice, CNumbering_Base::m_object, CNumbering_Base::ResetSelection(), and rapidjson::value.

SetEnum() [2/2]

CNumbering_Base::TEnum & CNumbering_Base::SetEnum

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 142 of file Numbering_.cpp.

References CNumbering_Base::e_Enum, eDoNotResetVariant, CNumbering_Base::m_object, and CNumbering_Base::Select().

SetExt() [1/2]

void CSeq_inst_Base::SetExt

(

CSeq_inst_Base::TExt &

value

)

Assign a value to Ext data member.

Parameters

value

Reference to value.

Definition at line 147 of file Seq_inst_.cpp.

References CSeq_inst_Base::m_Ext, and rapidjson::value.

Referenced by AddLiteral(), AgpRead(), CExpandGaps::apply(), CConvertSelectedGaps::apply_impl(), CEditSelectedGaps::apply_impl(), CCombineAdjacentGaps::apply_impl(), CFastaReader::AssembleSeq(), CBlobSplitterImpl::AttachToSkeleton(), BOOST_AUTO_TEST_CASE(), CBioseq::CBioseq(), CGapsEditor::ConvertNs2Gaps(), CBlobSplitterImpl::CopySequence(), CRawSeqToDeltaByN::DeltaSeqToRaw(), GetBioseq(), CAddLinkageToGaps::GetCommand(), CCSraRefSeqIterator::GetRefBioseq(), CWGSScaffoldIterator::GetSeq_inst(), LoadSequencesToScope(), MakeMaskingBioseq(), NormalizeUnknownLengthGaps(), CAgpToSeqEntry::OnGapOrComponent(), CBioseq::PackAsDeltaSeq(), PatchTargetSequence(), CBam2GraphApp::ProcessFile(), ReverseComplement(), s_AddGap(), s_AddLiteral(), SeqLocToBioseq(), CCachedSequence::SplitSeqData(), TrimSeqData(), CAutogeneratedCleanup::x_BasicCleanupBioseq_inst(), CFeatureGenerator::SImplementation::x_CollectMrnaSequence(), CFeatureGenerator::SImplementation::x_CreateProteinBioseq(), CSeqMap::x_DoUpdateSeq_inst(), CAutogeneratedExtendedCleanup::x_ExtendedCleanupBioseq_inst(), CWGSSeqIterator::x_SetDelta(), CVectorTrimPanel::x_SetSeqData(), CSequenceAmbigTrimmer::x_SliceBioseq(), and CForeignContaminationScreenReportReader::xTrimExt().

SetExt() [2/2]

CSeq_inst_Base::TExt & CSeq_inst_Base::SetExt

(

void

)

Assign a value to Ext data member.

Returns

Reference to the data value.

Definition at line 152 of file Seq_inst_.cpp.

References CSeq_inst_Base::m_Ext.

Referenced by CSeq_inst::ConvertDeltaToRaw().

SetFig() [1/3]

void CPubdesc_Base::SetFig ( const TFig &  value )

inline

Assign a value to Fig data member.

Parameters

value

Value to assign

Definition at line 691 of file Pubdesc_.hpp.

References CPubdesc_Base::m_Fig, CPubdesc_Base::m_set_State, and rapidjson::value.

SetFig() [2/3]

void CPubdesc_Base::SetFig ( CPubdesc_Base::TFig &&  value )

inline

Definition at line 698 of file Pubdesc_.hpp.

References CPubdesc_Base::m_Fig, CPubdesc_Base::m_set_State, and rapidjson::value.

SetFig() [3/3]

CPubdesc_Base::TFig & CPubdesc_Base::SetFig ( void  )

inline

Assign a value to Fig data member.

Returns

Reference to the data value.

Definition at line 705 of file Pubdesc_.hpp.

References CPubdesc_Base::IsSetFig(), CPubdesc_Base::m_Fig, CPubdesc_Base::m_set_State, and CSerialObject::UnassignedString().

SetFtable()

CSeq_annot_Base::C_Data::TFtable & CSeq_annot_Base::C_Data::SetFtable ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 628 of file Seq_annot_.hpp.

References eDoNotResetVariant.

Referenced by CAutogeneratedCleanup::x_BasicCleanupSeqAnnotData().

SetFuzz() [1/4]

void CSeq_inst_Base::SetFuzz

(

CSeq_inst_Base::TFuzz &

value

)

Assign a value to Fuzz data member.

Parameters

value

Reference to value.

Definition at line 113 of file Seq_inst_.cpp.

References CSeq_inst_Base::m_Fuzz, and rapidjson::value.

Referenced by CBlobSplitterImpl::CopySequence(), and GetBioseq().

SetFuzz() [2/4]

void CSeq_literal_Base::SetFuzz

(

CSeq_literal_Base::TFuzz &

value

)

Assign a value to Fuzz data member.

Parameters

value

Reference to value.

Definition at line 57 of file Seq_literal_.cpp.

References CSeq_literal_Base::m_Fuzz, and rapidjson::value.

Referenced by CConvertSelectedGaps::apply_impl(), CCombineAdjacentGaps::apply_impl(), CBlobSplitterImpl::CopySequence(), variation_ref::CVariationUtil::s_CatLiterals(), variation::CVariationUtil::s_CatLiterals(), CSeqMap::x_DoUpdateSeq_inst(), CWGSSeqIterator::x_GetSegmentsWithRecoveredGaps(), and CGapsEditor::x_SetGapParameters().

SetFuzz() [3/4]

CSeq_inst_Base::TFuzz & CSeq_inst_Base::SetFuzz

(

void

)

Assign a value to Fuzz data member.

Returns

Reference to the data value.

Definition at line 118 of file Seq_inst_.cpp.

References CSeq_inst_Base::m_Fuzz.

SetFuzz() [4/4]

CSeq_literal_Base::TFuzz & CSeq_literal_Base::SetFuzz

(

void

)

Assign a value to Fuzz data member.

Returns

Reference to the data value.

Definition at line 62 of file Seq_literal_.cpp.

References CSeq_literal_Base::m_Fuzz.

SetGap() [1/2]

void CSeq_data_Base::SetGap

(

CSeq_data_Base::TGap &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 196 of file Seq_data_.cpp.

References CObject::AddReference(), CSeq_data_Base::e_Gap, CSeq_data_Base::m_choice, CSeq_data_Base::m_object, CSeq_data_Base::ResetSelection(), and rapidjson::value.

SetGap() [2/2]

CSeq_data_Base::TGap & CSeq_data_Base::SetGap

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 190 of file Seq_data_.cpp.

References CSeq_data_Base::e_Gap, eDoNotResetVariant, CSeq_data_Base::m_object, and CSeq_data_Base::Select().

SetGbmoltype() [1/3]

void CMolInfo_Base::SetGbmoltype ( const TGbmoltype &  value )

inline

Assign a value to Gbmoltype data member.

Parameters

value

Value to assign

Definition at line 640 of file MolInfo_.hpp.

References CMolInfo_Base::m_Gbmoltype, CMolInfo_Base::m_set_State, and rapidjson::value.

SetGbmoltype() [2/3]

void CMolInfo_Base::SetGbmoltype ( CMolInfo_Base::TGbmoltype &&  value )

inline

Definition at line 647 of file MolInfo_.hpp.

References CMolInfo_Base::m_Gbmoltype, CMolInfo_Base::m_set_State, and rapidjson::value.

SetGbmoltype() [3/3]

CMolInfo_Base::TGbmoltype & CMolInfo_Base::SetGbmoltype ( void  )

inline

Assign a value to Gbmoltype data member.

Returns

Reference to the data value.

Definition at line 654 of file MolInfo_.hpp.

References CMolInfo_Base::IsSetGbmoltype(), CMolInfo_Base::m_Gbmoltype, CMolInfo_Base::m_set_State, and CSerialObject::UnassignedString().

SetGenbank() [1/2]

void CSeqdesc_Base::SetGenbank

(

CSeqdesc_Base::TGenbank &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 346 of file Seqdesc_.cpp.

References CObject::AddReference(), CSeqdesc_Base::e_Genbank, CSeqdesc_Base::m_choice, CSeqdesc_Base::m_object, CSeqdesc_Base::ResetSelection(), and rapidjson::value.

SetGenbank() [2/2]

CSeqdesc_Base::TGenbank & CSeqdesc_Base::SetGenbank

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 340 of file Seqdesc_.cpp.

References CSeqdesc_Base::e_Genbank, eDoNotResetVariant, CSeqdesc_Base::m_object, and CSeqdesc_Base::Select().

Referenced by AddGenbankKeyword(), CAddStructuredCommentKeyword::ApplyToCSeq_entry_genbank(), BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), CGenbankKeywordField::ClearVal(), CGBBlockField::ClearVal(), CSequenceEditingEventHandler::CreateDescriptor(), CEditHistory::GetCommand(), GetEmblDescr(), GetGenBankDescr(), CEditingActionDescKeyword::Modify(), CBarcodeTool::OnAddKeyword(), CBarcodeTool::OnRemoveKeyword(), CFindASN1Dlg::ReplaceInDesc(), CGBBlockField::SetVal(), CGenbankKeywordField::SetVal(), CEditingActionDescKeyword::SetValue(), CAutogeneratedCleanup::x_BasicCleanupBioseq_descr_descr_E(), CAutogeneratedCleanup::x_BasicCleanupBioseqSetDesc(), CNewCleanup_imp::x_CleanupGenbankBlock(), CNewCleanup_imp::x_CopyGBBlockDivToOrgnameDiv(), CAutogeneratedExtendedCleanup::x_ExtendedCleanupSeqdesc(), CNewCleanup_imp::x_FixStructuredCommentKeywords(), and XMLGetDescr().

SetGeneral() [1/2]

void CAnnot_id_Base::SetGeneral

(

CAnnot_id_Base::TGeneral &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 146 of file Annot_id_.cpp.

References CObject::AddReference(), CAnnot_id_Base::e_General, CAnnot_id_Base::m_choice, CAnnot_id_Base::m_object, CAnnot_id_Base::ResetSelection(), and rapidjson::value.

SetGeneral() [2/2]

CAnnot_id_Base::TGeneral & CAnnot_id_Base::SetGeneral

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 140 of file Annot_id_.cpp.

References CAnnot_id_Base::e_General, eDoNotResetVariant, CAnnot_id_Base::m_object, and CAnnot_id_Base::Select().

SetGraph()

CSeq_annot_Base::C_Data::TGraph & CSeq_annot_Base::C_Data::SetGraph ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 668 of file Seq_annot_.hpp.

References eDoNotResetVariant.

Referenced by CAutogeneratedCleanup::x_BasicCleanupSeqAnnotData().

SetHas_zero() [1/2]

void CNum_cont_Base::SetHas_zero ( CNum_cont_Base::THas_zero  value )

inline

Assign a value to Has_zero data member.

Parameters

value

Value to assign

Definition at line 328 of file Num_cont_.hpp.

References CNum_cont_Base::m_Has_zero, CNum_cont_Base::m_set_State, and rapidjson::value.

SetHas_zero() [2/2]

CNum_cont_Base::THas_zero & CNum_cont_Base::SetHas_zero ( void  )

inline

Assign a value to Has_zero data member.

Returns

Reference to the data value.

Definition at line 335 of file Num_cont_.hpp.

References CNum_cont_Base::IsSetHas_zero(), CNum_cont_Base::m_Has_zero, CNum_cont_Base::m_set_State, and CSerialObject::UnassignedByte().

SetHet() [1/2]

void CSeqdesc_Base::SetHet

(

const THet &

value

)

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 560 of file Seqdesc_.cpp.

References CSeqdesc_Base::e_Het, eDoNotResetVariant, CSeqdesc_Base::m_Het, CSeqdesc_Base::Select(), and rapidjson::value.

SetHet() [2/2]

CSeqdesc_Base::THet & CSeqdesc_Base::SetHet ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 1183 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Het, eDoNotResetVariant, CSeqdesc_Base::m_Het, and CSeqdesc_Base::Select().

SetHist() [1/2]

void CSeq_inst_Base::SetHist

(

CSeq_inst_Base::THist &

value

)

Assign a value to Hist data member.

Parameters

value

Reference to value.

Definition at line 164 of file Seq_inst_.cpp.

References CSeq_inst_Base::m_Hist, and rapidjson::value.

Referenced by CLoadSecondaryAccessions::apply(), CBlobSplitterImpl::CopySequence(), CAddSecondary::GetCommand(), CEditHistory::GetCommand(), CRemoveSeqHistAssembly::GetCommand(), CCreateSeqHistForTpa::GetCreateSeqHistFromTpaCommand(), CWGSProteinIterator::GetSeq_inst(), CAutogeneratedCleanup::x_BasicCleanupBioseq_inst(), CFeatureGenerator::SImplementation::x_CreateProteinBioseq(), and CModAdder::x_SetHist().

SetHist() [2/2]

CSeq_inst_Base::THist & CSeq_inst_Base::SetHist

(

void

)

Assign a value to Hist data member.

Returns

Reference to the data value.

Definition at line 169 of file Seq_inst_.cpp.

References CSeq_inst_Base::m_Hist.

SetId() [1/2]

CBioseq_Base::TId & CBioseq_Base::SetId ( void  )

inline

Assign a value to Id data member.

Returns

Reference to the data value.

Definition at line 296 of file Bioseq_.hpp.

References CBioseq_Base::m_Id, and CBioseq_Base::m_set_State.

Referenced by AddNIDSeqId(), CCleanup::AddProtein(), AddSentinelRNASeq(), SequenceTable::addSequence(), CBuildDatabase::AddSequences(), CFeatGapInfo::AdjustProteinSeq(), AgpRead(), CForeignContaminationScreenReportReader::AnnotateOrRemove(), CTable2AsnContext::ApplyAccession(), CAutogeneratedCleanup::BasicCleanupBioseq(), CDUpdater::blast(), BldProtRefSeqEntry(), BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), BuildBigGoodNucProtSet(), BuildGoodNucProtSet(), BuildGoodSegSet(), BuildGoodSeq(), BuildGoodSpliceNucProtSet(), BuildNucProtSet(), BuildSegSetPart(), BuildSequence(), CBioseq::CBioseq(), ChangeGoodNucProtSetIdToGenbankName(), ChangeId(), ChangeNucId(), ChangeNucProtSetNucId(), ChangeNucProtSetProteinId(), ChangeProtId(), CheckLocalId(), CkCdRegion(), CBlobSplitterImpl::CopySkeleton(), CCreateProteinId::create_protein_ids(), CPhrap_Seq::CreateBioseq(), CBlastBioseqMaker::CreateBioseqFromId(), CVDBBlastUtil::CreateBioseqFromOid(), CVDBBlastUtil::CreateBioseqFromVDBSeqId(), CAlnVec::CreateConsensus(), CreateEntryBioseq(), CreateTruncatedSequence(), CAddBioseqChecker::Do(), EmblAscii(), CCmdAddCDS::Execute(), CCmdCreateCDS::Execute(), sequpd::FixCollidingIDs_Bioseq(), fta_create_imgt_misc_feat(), fta_create_wgs_dbtag(), GenBankAsciiOrig(), get_bioseq(), CSeqDBVol::GetBioseq(), GetBioseq(), GetBioseqWithFootprintForNthRow(), ConsensusMaker::getConsensusSeqEntry(), GetDescrSPBlock(), GetGoodSeqEntryWithFeatureIds(), GetMasterBioseqWithFootprintOld(), CWGSDb_Impl::GetMasterSeq_entry(), GetProtRefAnnot(), CCSraRefSeqIterator::GetRefBioseq(), GetReleaseInfo(), CCSraShortReadIterator::GetShortBioseq(), CBamAlignIterator::GetShortBioseq(), CCSraAlignIterator::GetShortBioseq(), CSraRun::GetSpotEntry(), IdFromEntry(), CwxDemoAlignTableFrame::LoadFile(), CwxDemoFeatureTableFrame::LoadFile(), CMultiReader::LoadTemplate(), CMakeCdrProds::MakeCdrProds(), CTable2AsnContext::MakeGenomeCenterId(), MakeMaskingBioseq(), MakeProteinForGoodNucProtSet(), MakeProteinForNucProtSet(), CBam2Seq_graph::MakeSeq_entry(), PssmMaker::modifyQuery(), ProcessForDbxref(), CGlimmerReader::Read(), CConversionApp::Read(), CReadBlastApp::ReadBlast(), CGff2Reader::ReadSeqEntry(), CDUpdater::reformatBioseqByBlastDefline(), CCachedSequence::RegisterIds(), ReplaceWellknownSeqs(), s_AddBioseqToBioseq(), s_AddGeneralAndLocal(), s_CreateBioseq(), s_FixBioseqDeltas(), CClippedScorer::ScoreAlignments(), SeqLocToBioseq(), CSeqUtils::SeqLocToBioseq(), SetEmptyId(), CFastaReader::SetIDs(), CCDSTranslationPanel::SetProtein(), CTable2AsnContext::SetSeqId(), Split_Qscore_SeqGraph_By_DeltaSeq(), CReadBlastApp::StoreBlast(), TestFeatInsideGap(), TestNewAccessionOnNuc(), TestNewAccessionOnStandaloneProt(), TestOneGeneralSeqId(), TestOneLongGeneral(), TestOneOtherAcc(), TranslateCDSCommand(), CIdMapperGCAssembly::x_AddAliasMappings(), CGC_Assembly_Parser::x_AddBioseq(), CSeq_loc_Mapper::x_AddVirtualBioseq(), CSequenceUpdater::x_AdjustProteinFeature(), CFeatureGenerator::SImplementation::x_CreateMrnaBioseq(), CFeatureGenerator::SImplementation::x_CreateProteinBioseq(), CImportFeatTable::x_DoImportCDS(), CSequenceUpdater::x_FixIDInNewEntry(), CEditObjectSeq_feat::x_HandleCdsProduct(), CAgpConverter::x_InitializeCopyOfTemplate(), CAgpconvertApplication::x_LoadTemplate(), CPromote::x_MakeNewBioseq(), CSequenceUpdater::x_PrepareNewEntry(), CPrimeCacheApplication::x_Process_Fasta(), CShortReadFastaInputSource::x_ReadFastaOneSeq(), CGFFReader::x_ReadFastaSequences(), CShortReadFastaInputSource::x_ReadFastc(), CShortReadFastaInputSource::x_ReadFastqOneSeq(), CSraInputSource::x_ReadOneSeq(), CGFFReader::x_ResolveNewID(), CCDSTranslationPanel::x_SetProtein(), CUnorderedSplitter::x_SplitDeltaExt(), CUnorderedSplitter::x_SplitSeqData(), CModifySeqId::x_UpdateBioseq(), CRemoveSeqId::x_UpdateBioseq(), CSequenceUpdater::x_UpdateProteinID(), CFeatureTableReader::xAddProteinToSeqEntry(), CFeatTableEdit::xGenerate_mRNA_Product(), XMLAscii(), and CFeatureTableReader::xTranslateProtein().

SetId() [2/2]

CSeq_annot_Base::TId & CSeq_annot_Base::SetId ( void  )

inline

Assign a value to Id data member.

Returns

Reference to the data value.

Definition at line 739 of file Seq_annot_.hpp.

References CSeq_annot_Base::m_Id, and CSeq_annot_Base::m_set_State.

Referenced by CAnnotationASN1::CImplementationData::DumpEvidence(), CBlobSplitterImpl::MakeSeq_annot(), CAnnotGetter::x_GetCompleteSeqAnnot(), and CGff2Reader::xAssignAnnotId().

SetIds() [1/3]

CAlign_def_Base::TIds & CAlign_def_Base::SetIds ( void  )

inline

Assign a value to Ids data member.

Returns

Reference to the data value.

Definition at line 273 of file Align_def_.hpp.

References CAlign_def_Base::m_Ids, and CAlign_def_Base::m_set_State.

Referenced by MakeCompartment(), and CAutogeneratedCleanup::x_BasicCleanupBioseqSet_annot_E_E_desc_desc_E_E_align_ETC().

SetIds() [2/3]

CSeq_annot_Base::C_Data::TIds & CSeq_annot_Base::C_Data::SetIds ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 688 of file Seq_annot_.hpp.

References eDoNotResetVariant.

Referenced by CAutogeneratedCleanup::x_BasicCleanupSeqAnnotData().

SetIds() [3/3]

CSeq_hist_rec_Base::TIds & CSeq_hist_rec_Base::SetIds ( void  )

inline

Assign a value to Ids data member.

Returns

Reference to the data value.

Definition at line 236 of file Seq_hist_rec_.hpp.

References CSeq_hist_rec_Base::m_Ids, and CSeq_hist_rec_Base::m_set_State.

Referenced by CAutogeneratedCleanup::x_BasicCleanupSeqHistRec().

SetInst() [1/2]

void CBioseq_Base::SetInst

(

CBioseq_Base::TInst &

value

)

Assign a value to Inst data member.

Parameters

value

Reference to value.

Definition at line 86 of file Bioseq_.cpp.

References CBioseq_Base::m_Inst, and rapidjson::value.

Referenced by CGapsEditor::AddBioseqAsLiteral(), AddGoodImpFeat(), AddNsToGoodDelta(), AddSentinelRNASeq(), AddToDeltaSeq(), CFeatGapInfo::AdjustProteinSeq(), AdjustProtFeatForNucProtSet(), AdjustSingleFeature(), AgpRead(), CForeignContaminationScreenReportReader::AnnotateOrRemove(), CGapsEditor::AppendGap(), CModAdder::Apply(), CTrimN::apply(), CSourceModParser::ApplyAllMods(), CSourceModParser::ApplyMods(), CFastaReader::AssembleSeq(), AssemblyGapsToDelta(), CFastaReader::AssignMolType(), CFastaReaderEx::AssignMolType(), CAutogeneratedCleanup::BasicCleanupBioseq(), BldProtRefSeqEntry(), BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), BuildBigGoodNucProtSet(), BuildGapFuzz100DeltaSeq(), BuildGenProdSetWithBigProduct(), BuildGoodDeltaSeq(), BuildGoodGenProdSet(), BuildGoodNucProtSet(), BuildGoodProtSeq(), BuildGoodSegSet(), BuildGoodSeq(), BuildGoodSpliceNucProtSet(), BuildNucProtSet(), BuildSegSetPart(), BuildSequence(), CCachedSequence::CCachedSequence(), CSeqTranslator::ChangeDeltaProteinToRawProtein(), CSequenceEditingEventHandler::ChangeToGenomicDna(), CheckTranslatedBioseq(), CkInitMetSP(), CMolInfoField::ClearVal(), CGapsEditor::ConvertBioseqToDelta(), CFeatureGenerator::SImplementation::ConvertMixedAlignToAnnot(), CGapsEditor::ConvertNs2Gaps(), CBlobSplitterImpl::CopySkeleton(), CPhrap_Seq::CreateBioseq(), CBlastBioseqMaker::CreateBioseqFromId(), CVDBBlastUtil::CreateBioseqFromOid(), CVDBBlastUtil::CreateBioseqFromVDBSeqId(), CAlnVec::CreateConsensus(), CPhrap_Contig::CreateContig(), CGapsEditor::CreateGap(), CPhrap_Read::CreateRead(), CreateTruncatedSequence(), DeltaBioseqPack(), CRawSeqToDeltaByN::DeltaSeqToRaw(), CCmdCreateCDS::Execute(), CAutogeneratedExtendedCleanup::ExtendedCleanupBioseq(), CNewCleanup_imp::FixUnsetMolFromBiomol(), fta_add_hist(), fta_parse_tpa_tsa_block(), GapsToDelta(), get_bioseq(), CSeqDBVol::GetBioseq(), GetBioseq(), CModifySeqId::GetCommand(), ConsensusMaker::getConsensusSeqEntry(), GetEmblInst(), GetEmblInstContig(), GetFlatBiomol(), GetGenBankInst(), GetGenBankInstContig(), GetGoodSeqEntryWithFeatureIds(), CWGSDb_Impl::GetMasterSeq_entry(), CCSraRefSeqIterator::GetRefBioseq(), GetRetranslateCDSCommand(), GetRnaRef(), GetSeqData(), CCSraShortReadIterator::GetShortBioseq(), CBamAlignIterator::GetShortBioseq(), CCSraAlignIterator::GetShortBioseq(), GetSPInst(), CSraRun::GetSpotEntry(), GetSprotDescr(), PssmMaker::getTrunctMaster(), InsertStop(), LoadSequencesToScope(), CMultiReader::LoadTemplate(), CMakeCdrProds::MakeCdrProds(), MakeEntryForDeltaConversion(), MakeMaskingBioseq(), MakeNucProtSet3Partial(), MakeProteinForGoodNucProtSet(), MakeProteinForNucProtSet(), CBam2Seq_graph::MakeSeq_entry(), MakeSeqLong(), OneTerminalTranslationExceptionTest(), CFastaReader::ParseDefLine(), CFastaReader::PostProcessIDs(), CNewCleanup_imp::ProtSeqBC(), CSeqAnnotFromFasta::PurgeNonAlphaFromSequence(), RawBioseqPack(), CGlimmerReader::Read(), CConversionApp::Read(), CGff2Reader::ReadSeqEntry(), RemoveDeltaSeqGaps(), RetranslateCdsForNucProtSet(), RevComp(), s_AddSeqDataToPssm(), CUpdateSeq_Input::s_ConvertDeltaToRawBioseq(), s_CreateBioseq(), s_FixBioseqDeltas(), s_ReplaceAllMolinfo(), CClippedScorer::ScoreAlignments(), SeqLocToBioseq(), CSeqUtils::SeqLocToBioseq(), SeqToDelta(), SeqToDeltaSP(), CMolInfoPanel::SetBioseqValues(), CCDSTranslationPanel::SetProtein(), SetSequenceEnd(), SetSequenceStart(), SetSpliceForMixLoc(), SetUpDelta(), CMolInfoField::SetVal(), SPAppendPIRToHist(), CCachedSequence::SplitSeqData(), sRefineNaMol(), TestCircularTopology(), TestFeatInsideGap(), TestOneGapSeq(), TestStartGapSeg(), CMacroFunction_TrimTerminalNs::TheFunction(), CdBlaster::truncateBioseq(), CIdMapperGCAssembly::x_AddAliasMappings(), CGC_Assembly_Parser::x_AddBioseq(), CCachedSequence::x_AddFullSeq_data(), CSeq_loc_Mapper::x_AddVirtualBioseq(), CFeatureGenerator::SImplementation::x_CreateMrnaBioseq(), CFeatureGenerator::SImplementation::x_CreateProteinBioseq(), CImportFeatTable::x_DoImportCDS(), CAdjustFeaturesForGaps::x_DoOne(), CFeatureGenerator::SImplementation::x_HandleCdsExceptions(), CAgpConverter::x_InitializeAndCheckCopyOfTemplate(), CAgpConverter::x_InitializeCopyOfTemplate(), CAgpconvertApplication::x_LoadTemplate(), CSequenceUpdater::x_PrepareNewEntry(), CPrimeCacheApplication::x_Process_Fasta(), CShortReadFastaInputSource::x_ReadFastaOneSeq(), CGFFReader::x_ReadFastaSequences(), CShortReadFastaInputSource::x_ReadFastc(), CShortReadFastaInputSource::x_ReadFastqOneSeq(), CSraInputSource::x_ReadOneSeq(), CNewCleanup_imp::x_RemoveSingleStrand(), CGFFReader::x_ResolveNewID(), CSequenceUpdater::x_RetranslateImportedCDSProduct(), CSequenceUpdater::x_RetranslateOldCDSProduct(), CBioseqContext::x_SetMapper(), CUnorderedSplitter::x_SplitDeltaExt(), CUnorderedSplitter::x_SplitSeqData(), CSplitDataLoader::x_SplitSeqData(), CFeatureTableReader::xConvertSeqIntoSeqSet(), XMLGetInst(), and XMLGetInstContig().

SetInst() [2/2]

CBioseq_Base::TInst & CBioseq_Base::SetInst ( void  )

inline

Assign a value to Inst data member.

Returns

Reference to the data value.

Definition at line 345 of file Bioseq_.hpp.

References CBioseq_Base::m_Inst, and CBioseq_Base::ResetInst().

Referenced by CBioseq::CBioseq(), and CBioseq::PackAsDeltaSeq().

SetIupacaa() [1/2]

void CSeq_data_Base::SetIupacaa

(

const TIupacaa &

value

)

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 172 of file Seq_data_.cpp.

References CSeq_data_Base::e_Iupacaa, eDoNotResetVariant, CSeq_data_Base::m_Iupacaa, CSeq_data_Base::Select(), and rapidjson::value.

SetIupacaa() [2/2]

CSeq_data_Base::TIupacaa & CSeq_data_Base::SetIupacaa ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 537 of file Seq_data_.hpp.

References CSeq_data_Base::e_Iupacaa, eDoNotResetVariant, CSeq_data_Base::m_Iupacaa, and CSeq_data_Base::Select().

Referenced by CSeqportUtil_implementation::AppendIupacaa(), CSeq_inst::ConvertDeltaToRaw(), CAlnVec::CreateConsensus(), CSeq_data::DoConstruct(), CSeqportUtil_implementation::GetIupacaaCopy(), CSeqportUtil_implementation::KeepIupacaa(), CSeqAnnotFromFasta::PurgeNonAlphaFromSequence(), and s_GetRnaRefLabel().

SetIupacna() [1/2]

void CSeq_data_Base::SetIupacna

(

const TIupacna &

value

)

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 166 of file Seq_data_.cpp.

References CSeq_data_Base::e_Iupacna, eDoNotResetVariant, CSeq_data_Base::m_Iupacna, CSeq_data_Base::Select(), and rapidjson::value.

SetIupacna() [2/2]

CSeq_data_Base::TIupacna & CSeq_data_Base::SetIupacna ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 517 of file Seq_data_.hpp.

References CSeq_data_Base::e_Iupacna, eDoNotResetVariant, CSeq_data_Base::m_Iupacna, and CSeq_data_Base::Select().

Referenced by CSeqportUtil_implementation::AppendIupacna(), CSeqportUtil_implementation::ComplementIupacna(), CSeq_inst::ConvertDeltaToRaw(), CAlnVec::CreateConsensus(), CSeq_data::DoConstruct(), CSeqportUtil_implementation::GetAmbigs_iupacna_ncbi2na(), CSeqportUtil_implementation::GetIupacnaCopy(), CSeqportUtil_implementation::KeepIupacna(), CSeqportUtil_implementation::ReverseIupacna(), CTestSingleAln_All::RunTest(), s_CountAmbiguities(), UpdateSeqLength(), and CVectorTrimPanel::x_SetSeqData().

SetLength() [1/4]

void CSeq_inst_Base::SetLength ( CSeq_inst_Base::TLength  value )

inline

Assign a value to Length data member.

Parameters

value

Value to assign

Definition at line 668 of file Seq_inst_.hpp.

References CSeq_inst_Base::m_Length, CSeq_inst_Base::m_set_State, and rapidjson::value.

Referenced by AgpRead(), CConvertSelectedGaps::apply_impl(), CEditSelectedGaps::apply_impl(), CCombineAdjacentGaps::apply_impl(), CFastaReader::AssembleSeq(), CBlobSplitterImpl::CopySequence(), CPhrap_Seq::CreateBioseq(), CVDBBlastUtil::CreateBioseqFromOid(), CVDBBlastUtil::CreateBioseqFromVDBSeqId(), CAlnVec::CreateConsensus(), CSeqDBVol::GetBioseq(), GetBioseq(), CAdjustForConsensusSpliceSite::GetCommandToAdjustCDSEnds(), ConsensusMaker::getConsensusSeqEntry(), CCSraRefSeqIterator::GetRefBioseq(), CWGSScaffoldIterator::GetSeq_inst(), CWGSProteinIterator::GetSeq_inst(), CCSraShortReadIterator::GetShortBioseq(), CBamAlignIterator::GetShortBioseq(), CCSraAlignIterator::GetShortBioseq(), CSraRun::GetSpotEntry(), PssmMaker::getTrunctMaster(), CMakeCdrProds::MakeCdrProds(), MakeEntryForDeltaConversion(), MakeMaskingBioseq(), CBam2Seq_graph::MakeSeq_entry(), NormalizeUnknownLengthGaps(), CAgpToSeqEntry::OnGapOrComponent(), PatchTargetSequence(), CGlimmerReader::Read(), s_FixBioseqDeltas(), CSequenceUpdater::s_UpdateSeqInst(), SeqLocToBioseq(), SetNewProteinSequence(), TrimSeqData(), TrimStopsFromCompleteCDS(), CFeatureGenerator::SImplementation::x_CollectMrnaSequence(), CFeatureGenerator::SImplementation::x_CreateProteinBioseq(), CSeqMap::x_DoUpdateSeq_inst(), CWGSSeqIterator::x_GetSeq_inst(), CUpdateSeq_Input::x_ReadAccession(), CSequenceUpdater::x_ReplaceSequence(), CVectorTrimPanel::x_RetranslateCDS(), CSequenceUpdater::x_RetranslateImportedCDSProduct(), CSequenceUpdater::x_RetranslateOldCDSProduct(), CVectorTrimPanel::x_SetSeqData(), CSequenceAmbigTrimmer::x_SliceBioseq(), CSequenceAmbigTrimmer::x_TrimToNothing(), CForeignContaminationScreenReportReader::xTrimData(), and CForeignContaminationScreenReportReader::xTrimExt().

SetLength() [2/4]

void CSeq_literal_Base::SetLength ( CSeq_literal_Base::TLength  value )

inline

Assign a value to Length data member.

Parameters

value

Value to assign

Definition at line 270 of file Seq_literal_.hpp.

References CSeq_literal_Base::m_Length, CSeq_literal_Base::m_set_State, and rapidjson::value.

Referenced by CDelta_ext::AddAndSplit(), AddLiteral(), CGapsEditor::AppendGap(), CConvertSelectedGaps::apply_impl(), CEditSelectedGaps::apply_impl(), CCombineAdjacentGaps::apply_impl(), BOOST_AUTO_TEST_CASE(), CBlobSplitterImpl::CopySequence(), CreateSeqDataChunk(), CRemoteBlastDbDataLoader::GetChunks(), CDelta_ext_PackTarget::NewSegment(), variation_ref::CVariationUtil::s_CatLiterals(), variation::CVariationUtil::s_CatLiterals(), s_SubtractTail(), CDelta_item::SetInsertion(), CHgvsNaIrepReader::x_CreateSSRVarref(), CSeqMap::x_DoUpdateSeq_inst(), variation_ref::CHgvsParser::x_expr2(), CWGSSeqIterator::x_GetSegmentsWithExplicitGaps(), CWGSSeqIterator::x_GetSegmentsWithRecoveredGaps(), CVcfReader::xAssignVariantDelins(), CVcfReader::xAssignVariantIns(), and CForeignContaminationScreenReportReader::xTrimLiteral().

SetLength() [3/4]

CSeq_inst_Base::TLength & CSeq_inst_Base::SetLength ( void  )

inline

Assign a value to Length data member.

Returns

Reference to the data value.

Definition at line 675 of file Seq_inst_.hpp.

References CSeq_inst_Base::IsSetLength(), CSeq_inst_Base::m_Length, CSeq_inst_Base::m_set_State, and CSerialObject::UnassignedByte().

Referenced by CSeq_inst::ConvertDeltaToRaw().

SetLength() [4/4]

CSeq_literal_Base::TLength & CSeq_literal_Base::SetLength ( void  )

inline

Assign a value to Length data member.

Returns

Reference to the data value.

Definition at line 277 of file Seq_literal_.hpp.

References CSeq_literal_Base::IsSetLength(), CSeq_literal_Base::m_Length, CSeq_literal_Base::m_set_State, and CSerialObject::UnassignedByte().

SetLinkage() [1/2]

void CSeq_gap_Base::SetLinkage ( CSeq_gap_Base::TLinkage  value )

inline

Assign a value to Linkage data member.

Parameters

value

Value to assign

Definition at line 338 of file Seq_gap_.hpp.

References CSeq_gap_Base::m_Linkage, CSeq_gap_Base::m_set_State, and rapidjson::value.

Referenced by AdjustGap(), CFastaReader::AssembleSeq(), BOOST_AUTO_TEST_CASE(), CreateSeqGap(), ResetLinkageEvidence(), sx_MakeGapLiteral(), and CAgpToSeqEntry::x_SetSeqGap().

SetLinkage() [2/2]

CSeq_gap_Base::TLinkage & CSeq_gap_Base::SetLinkage ( void  )

inline

Assign a value to Linkage data member.

Returns

Reference to the data value.

Definition at line 345 of file Seq_gap_.hpp.

References CSeq_gap_Base::IsSetLinkage(), CSeq_gap_Base::m_Linkage, CSeq_gap_Base::m_set_State, and CSerialObject::UnassignedByte().

Referenced by CSeq_gap::AddLinkageEvidence(), CSeq_gap::ChangeType(), CSeq_gap::SetLinkageTypeLinkedRepeat(), and CSeq_gap::SetLinkageTypeScaffold().

SetLinkage_evidence()

CSeq_gap_Base::TLinkage_evidence & CSeq_gap_Base::SetLinkage_evidence ( void  )

inline

Assign a value to Linkage_evidence data member.

Returns

Reference to the data value.

Definition at line 375 of file Seq_gap_.hpp.

References CSeq_gap_Base::m_Linkage_evidence, and CSeq_gap_Base::m_set_State.

Referenced by CSeq_gap::AddLinkageEvidence(), AdjustGap(), CFastaReader::AssembleSeq(), BOOST_AUTO_TEST_CASE(), CreateSeqGap(), sx_AddEvidence(), and CAgpToSeqEntry::x_SetSeqGap().

SetLiteral() [1/2]

void CDelta_seq_Base::SetLiteral

(

CDelta_seq_Base::TLiteral &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 136 of file Delta_seq_.cpp.

References CObject::AddReference(), CDelta_seq_Base::e_Literal, CDelta_seq_Base::m_choice, CDelta_seq_Base::m_object, CDelta_seq_Base::ResetSelection(), and rapidjson::value.

SetLiteral() [2/2]

CDelta_seq_Base::TLiteral & CDelta_seq_Base::SetLiteral

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 130 of file Delta_seq_.cpp.

References CDelta_seq_Base::e_Literal, eDoNotResetVariant, CDelta_seq_Base::m_object, and CDelta_seq_Base::Select().

Referenced by AddLiteral(), CConvertSelectedGaps::apply_impl(), CEditSelectedGaps::apply_impl(), CCombineAdjacentGaps::apply_impl(), CBlobSplitterImpl::AttachToSkeleton(), CAddLinkageToGaps::GetCommand(), CSeqMap::x_DoUpdateSeq_inst(), CGapsEditor::x_SetGapParameters(), and CForeignContaminationScreenReportReader::xTrimExt().

SetLoc() [1/2]

void CDelta_seq_Base::SetLoc

(

CDelta_seq_Base::TLoc &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 114 of file Delta_seq_.cpp.

References CObject::AddReference(), CDelta_seq_Base::e_Loc, CDelta_seq_Base::m_choice, CDelta_seq_Base::m_object, CDelta_seq_Base::ResetSelection(), and rapidjson::value.

SetLoc() [2/2]

CDelta_seq_Base::TLoc & CDelta_seq_Base::SetLoc

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 108 of file Delta_seq_.cpp.

References CDelta_seq_Base::e_Loc, eDoNotResetVariant, CDelta_seq_Base::m_object, and CDelta_seq_Base::Select().

Referenced by CSeqMap::x_DoUpdateSeq_inst(), and CBioseq::x_SeqLoc_To_DeltaExt().

SetLocal() [1/2]

void CAnnot_id_Base::SetLocal

(

CAnnot_id_Base::TLocal &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 124 of file Annot_id_.cpp.

References CObject::AddReference(), CAnnot_id_Base::e_Local, CAnnot_id_Base::m_choice, CAnnot_id_Base::m_object, CAnnot_id_Base::ResetSelection(), and rapidjson::value.

SetLocal() [2/2]

CAnnot_id_Base::TLocal & CAnnot_id_Base::SetLocal

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 118 of file Annot_id_.cpp.

References CAnnot_id_Base::e_Local, eDoNotResetVariant, CAnnot_id_Base::m_object, and CAnnot_id_Base::Select().

SetLocs()

CSeq_annot_Base::C_Data::TLocs & CSeq_annot_Base::C_Data::SetLocs ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 708 of file Seq_annot_.hpp.

References eDoNotResetVariant.

Referenced by CAutogeneratedCleanup::x_BasicCleanupSeqAnnotData().

SetMap() [1/2]

void CSeq_ext_Base::SetMap

(

CSeq_ext_Base::TMap &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 170 of file Seq_ext_.cpp.

References CObject::AddReference(), CSeq_ext_Base::e_Map, CSeq_ext_Base::m_choice, CSeq_ext_Base::m_object, CSeq_ext_Base::ResetSelection(), and rapidjson::value.

SetMap() [2/2]

CSeq_ext_Base::TMap & CSeq_ext_Base::SetMap

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 164 of file Seq_ext_.cpp.

References CSeq_ext_Base::e_Map, eDoNotResetVariant, CSeq_ext_Base::m_object, and CSeq_ext_Base::Select().

Referenced by CModifySeqId::GetCommand(), and CAutogeneratedCleanup::x_BasicCleanupSeqExt().

SetMaploc() [1/5]

void CPubdesc_Base::SetMaploc ( const TMaploc &  value )

inline

Assign a value to Maploc data member.

Parameters

value

Value to assign

Definition at line 853 of file Pubdesc_.hpp.

References CPubdesc_Base::m_Maploc, CPubdesc_Base::m_set_State, and rapidjson::value.

SetMaploc() [2/5]

void CPubdesc_Base::SetMaploc ( CPubdesc_Base::TMaploc &&  value )

inline

Definition at line 860 of file Pubdesc_.hpp.

References CPubdesc_Base::m_Maploc, CPubdesc_Base::m_set_State, and rapidjson::value.

SetMaploc() [3/5]

void CSeqdesc_Base::SetMaploc

(

CSeqdesc_Base::TMaploc &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 302 of file Seqdesc_.cpp.

References CObject::AddReference(), CSeqdesc_Base::e_Maploc, CSeqdesc_Base::m_choice, CSeqdesc_Base::m_object, CSeqdesc_Base::ResetSelection(), and rapidjson::value.

SetMaploc() [4/5]

CPubdesc_Base::TMaploc & CPubdesc_Base::SetMaploc ( void  )

inline

Assign a value to Maploc data member.

Returns

Reference to the data value.

Definition at line 867 of file Pubdesc_.hpp.

References CPubdesc_Base::IsSetMaploc(), CPubdesc_Base::m_Maploc, CPubdesc_Base::m_set_State, and CSerialObject::UnassignedString().

SetMaploc() [5/5]

CSeqdesc_Base::TMaploc & CSeqdesc_Base::SetMaploc

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 296 of file Seqdesc_.cpp.

References CSeqdesc_Base::e_Maploc, eDoNotResetVariant, CSeqdesc_Base::m_object, and CSeqdesc_Base::Select().

SetMethod() [1/2]

void CSeqdesc_Base::SetMethod ( CSeqdesc_Base::TMethod  value )

inline

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 999 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Method, eDoNotResetVariant, CSeqdesc_Base::m_Method, CSeqdesc_Base::Select(), and rapidjson::value.

SetMethod() [2/2]

CSeqdesc_Base::TMethod & CSeqdesc_Base::SetMethod ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 992 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Method, eDoNotResetVariant, CSeqdesc_Base::m_Method, and CSeqdesc_Base::Select().

Referenced by BOOST_AUTO_TEST_CASE().

SetModelev() [1/2]

void CSeqdesc_Base::SetModelev

(

CSeqdesc_Base::TModelev &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 622 of file Seqdesc_.cpp.

References CObject::AddReference(), CSeqdesc_Base::e_Modelev, CSeqdesc_Base::m_choice, CSeqdesc_Base::m_object, CSeqdesc_Base::ResetSelection(), and rapidjson::value.

SetModelev() [2/2]

CSeqdesc_Base::TModelev & CSeqdesc_Base::SetModelev

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 616 of file Seqdesc_.cpp.

References CSeqdesc_Base::e_Modelev, eDoNotResetVariant, CSeqdesc_Base::m_object, and CSeqdesc_Base::Select().

Referenced by CAutogeneratedCleanup::x_BasicCleanupBioseq_descr_descr_E(), and CAutogeneratedCleanup::x_BasicCleanupBioseqSetDesc().

SetModif()

CSeqdesc_Base::TModif & CSeqdesc_Base::SetModif ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 972 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Modif, eDoNotResetVariant, CSeqdesc_Base::m_Modif, and CSeqdesc_Base::Select().

Referenced by BOOST_AUTO_TEST_CASE(), and BOOST_FIXTURE_TEST_CASE().

SetMol() [1/2]

void CSeq_inst_Base::SetMol ( CSeq_inst_Base::TMol  value )

inline

Assign a value to Mol data member.

Parameters

value

Value to assign

Definition at line 621 of file Seq_inst_.hpp.

References CSeq_inst_Base::m_Mol, CSeq_inst_Base::m_set_State, and rapidjson::value.

Referenced by AgpRead(), CMolInfoEditDlg::ApplyToInst(), CFastaReaderEx::AssignMolType(), CBioseq::CBioseq(), CBlobSplitterImpl::CopySequence(), CPhrap_Seq::CreateBioseq(), CVDBBlastUtil::CreateBioseqFromOid(), CVDBBlastUtil::CreateBioseqFromVDBSeqId(), CAlnVec::CreateConsensus(), CSeqDBVol::GetBioseq(), GetBioseq(), ConsensusMaker::getConsensusSeqEntry(), CWGSDb_Impl::GetMasterSeq_entry(), CCSraRefSeqIterator::GetRefBioseq(), CWGSScaffoldIterator::GetSeq_inst(), CWGSProteinIterator::GetSeq_inst(), CCSraShortReadIterator::GetShortBioseq(), CBamAlignIterator::GetShortBioseq(), CCSraAlignIterator::GetShortBioseq(), CSraRun::GetSpotEntry(), LoadSequencesToScope(), CMakeCdrProds::MakeCdrProds(), MakeMaskingBioseq(), CBam2Seq_graph::MakeSeq_entry(), CAgpToSeqEntry::OnGapOrComponent(), CBam2GraphApp::ProcessFile(), CGlimmerReader::Read(), CEditingBtnsPanel::rRNAtoDNA(), s_FixBioseqDeltas(), s_SeqDBWriteSeqDataNucl(), s_SeqDBWriteSeqDataProt(), SeqLocToBioseq(), CMolInfoField::SetVal(), CEditingActionMolInfoClass::SetValue(), CFeatureGenerator::SImplementation::x_CollectMrnaSequence(), CFeatureGenerator::SImplementation::x_CreateProteinBioseq(), CWGSSeqIterator::x_GetSeq_inst(), CModAdder::x_SetMolecule(), and CModAdder::x_SetMoleculeFromMolType().

SetMol() [2/2]

CSeq_inst_Base::TMol & CSeq_inst_Base::SetMol ( void  )

inline

Assign a value to Mol data member.

Returns

Reference to the data value.

Definition at line 628 of file Seq_inst_.hpp.

References CSeq_inst_Base::IsSetMol(), CSeq_inst_Base::m_Mol, CSeq_inst_Base::m_set_State, and CSerialObject::UnassignedByte().

SetMol_type() [1/2]

void CSeqdesc_Base::SetMol_type ( CSeqdesc_Base::TMol_type  value )

inline

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 952 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Mol_type, eDoNotResetVariant, CSeqdesc_Base::m_Mol_type, CSeqdesc_Base::Select(), and rapidjson::value.

SetMol_type() [2/2]

CSeqdesc_Base::TMol_type & CSeqdesc_Base::SetMol_type ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 945 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Mol_type, eDoNotResetVariant, CSeqdesc_Base::m_Mol_type, and CSeqdesc_Base::Select().

Referenced by BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), and CMakeCdrProds::MakeCdrProds().

SetMolinfo() [1/2]

void CSeqdesc_Base::SetMolinfo

(

CSeqdesc_Base::TMolinfo &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 600 of file Seqdesc_.cpp.

References CObject::AddReference(), CSeqdesc_Base::e_Molinfo, CSeqdesc_Base::m_choice, CSeqdesc_Base::m_object, CSeqdesc_Base::ResetSelection(), and rapidjson::value.

SetMolinfo() [2/2]

CSeqdesc_Base::TMolinfo & CSeqdesc_Base::SetMolinfo

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 594 of file Seqdesc_.cpp.

References CSeqdesc_Base::e_Molinfo, eDoNotResetVariant, CSeqdesc_Base::m_object, and CSeqdesc_Base::Select().

Referenced by CCleanup::AddMissingMolInfo(), CNewCleanup_imp::AddMolInfo(), CCleanup::AddProtein(), AdjustForCDSPartials(), CTruncateCDS::AdjustMolinfo(), CMolInfoEditDlg::ApplyToMolInfo(), CFastaReaderEx::AssembleSeq(), CDiscrepancyVisitorImpl< _Name >::Autofix(), BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), BuildBigGoodNucProtSet(), BuildGoodNucProtSet(), BuildGoodSeq(), BuildNucProtSet(), BuildSequence(), CSequenceEditingEventHandler::ChangeToGenomicDna(), CMolInfoField::ClearVal(), CSequenceEditingEventHandler::CreateDescriptor(), CMolInfoEditDlg::CreateNewMolInfo(), CEditObjectSeq_desc::CreateWindow(), CCmdAddCDS::Execute(), fta_set_molinfo_completeness(), CMolInfoField::GetApplyObjects(), GetEmblDescr(), GetGenBankDescr(), GetGoodSeqEntryWithFeatureIds(), GetProtRefDescr(), GetSprotDescr(), GetSynchronizeProductMolInfoCommand(), LaunchMolInfoEditor(), MakeProteinForGoodNucProtSet(), MakeProteinForNucProtSet(), MoveBiomolToTop(), CBioseqEditor::OnCreateDescriptor(), CEditingActionMolInfoMolecule::ResetValue(), CEditingActionMolInfoTechnique::ResetValue(), CEditingActionMolInfoCompletedness::ResetValue(), RetranslateCdregion(), CEditingBtnsPanel::rRNAtoDNA(), CPrimeCacheApplication::Run(), CMacroBioData_MolInfoIter::RunEditCommand(), SetBiomol(), SetCompleteness(), CCleanup::SetMolinfoBiomol(), CCleanup::SetMolinfoTech(), SetTech(), CMolInfoField::SetVal(), CEditingActionMolInfoMolecule::SetValue(), CEditingActionMolInfoTechnique::SetValue(), CEditingActionMolInfoCompletedness::SetValue(), CCmdCreateCDS::x_AddMolinfoDescriptorToProtein(), CAutogeneratedCleanup::x_BasicCleanupBioseq_descr_descr_E(), CAutogeneratedCleanup::x_BasicCleanupBioseqSetDesc(), CFeatureGenerator::SImplementation::x_CreateMrnaBioseq(), CFeatureGenerator::SImplementation::x_CreateProteinBioseq(), CPromote::x_MakeMolinfoDesc(), CPromote::x_PromoteCdregion(), CNewCleanup_imp::x_RescueMolInfo(), CNewCleanup_imp::x_SetPartialsForProtein(), CFeatureTableReader::xConvertSeqIntoSeqSet(), CFeatTableEdit::xGenerate_mRNA_Product(), XMLGetDescr(), and CFeatureTableReader::xTranslateProtein().

SetName() [1/13]

void CAnnotdesc_Base::SetName

(

const TName &

value

)

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 144 of file Annotdesc_.cpp.

References CAnnotdesc_Base::e_Name, eDoNotResetVariant, CAnnotdesc_Base::m_string, CAnnotdesc_Base::Select(), and rapidjson::value.

SetName() [2/13]

void CPubdesc_Base::SetName ( const TName &  value )

inline

Assign a value to Name data member.

Parameters

value

Value to assign

Definition at line 644 of file Pubdesc_.hpp.

References CPubdesc_Base::m_Name, CPubdesc_Base::m_set_State, and rapidjson::value.

SetName() [3/13]

void CSeq_annot_Base::SetName ( const TName &  value )

inline

Assign a value to Name data member.

Parameters

value

Value to assign

Definition at line 814 of file Seq_annot_.hpp.

References CSeq_annot_Base::m_Name, CSeq_annot_Base::m_set_State, and rapidjson::value.

Referenced by CAlignGroup::GroupByLikeTaxIds(), CAlignGroup::GroupBySeqIds(), CAlignGroup::GroupBySequenceType(), CAlignGroup::GroupByStrand(), CAlignGroup::GroupByTaxIds(), CBlobSplitterImpl::MakeSeq_annot(), CGBankLoadingJob::x_CreateProjectItems(), and CAnnotGetter::x_GetCompleteSeqAnnot().

SetName() [4/13]

void CSeqdesc_Base::SetName

(

const TName &

value

)

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 228 of file Seqdesc_.cpp.

References CSeqdesc_Base::e_Name, eDoNotResetVariant, CSeqdesc_Base::m_string, CSeqdesc_Base::Select(), and rapidjson::value.

SetName() [5/13]

void CTextannot_id_Base::SetName ( const TName &  value )

inline

Assign a value to Name data member.

Parameters

value

Value to assign

Definition at line 308 of file Textannot_id_.hpp.

References CTextannot_id_Base::m_Name, CTextannot_id_Base::m_set_State, and rapidjson::value.

SetName() [6/13]

void CPubdesc_Base::SetName ( CPubdesc_Base::TName &&  value )

inline

Definition at line 651 of file Pubdesc_.hpp.

References CPubdesc_Base::m_Name, CPubdesc_Base::m_set_State, and rapidjson::value.

SetName() [7/13]

void CSeq_annot_Base::SetName ( CSeq_annot_Base::TName &&  value )

inline

Definition at line 821 of file Seq_annot_.hpp.

References CSeq_annot_Base::m_Name, CSeq_annot_Base::m_set_State, and rapidjson::value.

SetName() [8/13]

void CTextannot_id_Base::SetName ( CTextannot_id_Base::TName &&  value )

inline

Definition at line 315 of file Textannot_id_.hpp.

References CTextannot_id_Base::m_Name, CTextannot_id_Base::m_set_State, and rapidjson::value.

SetName() [9/13]

CAnnotdesc_Base::TName & CAnnotdesc_Base::SetName ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 508 of file Annotdesc_.hpp.

References CAnnotdesc_Base::e_Name, eDoNotResetVariant, CAnnotdesc_Base::m_string, and CAnnotdesc_Base::Select().

Referenced by CTableAnnotDataSource::CreateSnps(), CVDBGraphSeqIterator::GetAnnot(), CCSRARefSeqInfo::LoadAnnotMainChunk(), CBamRefSeqInfo::LoadPileupChunk(), CWig2tableApplication::MakeAnnot(), CCSraRefSeqIterator::MakeSeq_annot(), CFeatureTableReader_Imp::ReadSequinFeatureTable(), CUpdateSeq_Input::s_Align2IdenticalSeq(), CSeq_annot::SetNameDesc(), CReadBlastApp::StoreBlast(), sx_SetTitle(), CGBankLoadingJob::x_CreateProjectItems(), CWGSSeqIterator::x_GetQualityAnnot(), CBamAlignIterator::x_GetSeq_annot(), CCSraRefSeqIterator::x_GetSeq_annot(), and CCSraShortReadIterator::x_GetSeq_annot().

SetName() [10/13]

CPubdesc_Base::TName & CPubdesc_Base::SetName ( void  )

inline

Assign a value to Name data member.

Returns

Reference to the data value.

Definition at line 658 of file Pubdesc_.hpp.

References CPubdesc_Base::IsSetName(), CPubdesc_Base::m_Name, CPubdesc_Base::m_set_State, and CSerialObject::UnassignedString().

SetName() [11/13]

CSeq_annot_Base::TName & CSeq_annot_Base::SetName ( void  )

inline

Assign a value to Name data member.

Returns

Reference to the data value.

Definition at line 828 of file Seq_annot_.hpp.

References CSeq_annot_Base::IsSetName(), CSeq_annot_Base::m_Name, CSeq_annot_Base::m_set_State, and CSerialObject::UnassignedString().

SetName() [12/13]

CSeqdesc_Base::TName & CSeqdesc_Base::SetName ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 1019 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Name, eDoNotResetVariant, CSeqdesc_Base::m_string, and CSeqdesc_Base::Select().

Referenced by BOOST_AUTO_TEST_CASE(), CBioseqEditor::OnCreateDescriptor(), CFindASN1Dlg::ReplaceInDesc(), CAutogeneratedCleanup::x_BasicCleanupBioseq_descr_descr_E(), and CAutogeneratedCleanup::x_BasicCleanupBioseqSetDesc().

SetName() [13/13]

CTextannot_id_Base::TName & CTextannot_id_Base::SetName ( void  )

inline

Assign a value to Name data member.

Returns

Reference to the data value.

Definition at line 322 of file Textannot_id_.hpp.

References CTextannot_id_Base::IsSetName(), CTextannot_id_Base::m_Name, CTextannot_id_Base::m_set_State, and CSerialObject::UnassignedString().

SetNames()

CNum_enum_Base::TNames & CNum_enum_Base::SetNames ( void  )

inline

Assign a value to Names data member.

Returns

Reference to the data value.

Definition at line 261 of file Num_enum_.hpp.

References CNum_enum_Base::m_Names, and CNum_enum_Base::m_set_State.

SetNcbi() [1/2]

void CAnnot_id_Base::SetNcbi ( CAnnot_id_Base::TNcbi  value )

inline

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 344 of file Annot_id_.hpp.

References CAnnot_id_Base::e_Ncbi, eDoNotResetVariant, CAnnot_id_Base::m_Ncbi, CAnnot_id_Base::Select(), and rapidjson::value.

SetNcbi() [2/2]

CAnnot_id_Base::TNcbi & CAnnot_id_Base::SetNcbi ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 337 of file Annot_id_.hpp.

References CAnnot_id_Base::e_Ncbi, eDoNotResetVariant, CAnnot_id_Base::m_Ncbi, and CAnnot_id_Base::Select().

SetNcbi2na()

CSeq_data_Base::TNcbi2na & CSeq_data_Base::SetNcbi2na ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 557 of file Seq_data_.hpp.

References CSeq_data_Base::e_Ncbi2na, eDoNotResetVariant, CSeq_data_Base::m_Ncbi2na, and CSeq_data_Base::Select().

Referenced by CSeqportUtil_implementation::AppendNcbi2na(), CSeqportUtil_implementation::ComplementNcbi2na(), CSeq_data::DoConstruct(), CWGSDb_Impl::SAmbiguityInfo::Get2na(), CSeqportUtil_implementation::GetNcbi2naCopy(), CSeqportUtil_implementation::KeepNcbi2na(), CSeqportUtil_implementation::MapIupacnaToNcbi2na(), CSeqportUtil_implementation::MapNcbi4naToNcbi2na(), CSeqportUtil_implementation::Pack(), and CSeqportUtil_implementation::ReverseNcbi2na().

SetNcbi4na()

CSeq_data_Base::TNcbi4na & CSeq_data_Base::SetNcbi4na ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 577 of file Seq_data_.hpp.

References CSeq_data_Base::e_Ncbi4na, eDoNotResetVariant, CSeq_data_Base::m_Ncbi4na, and CSeq_data_Base::Select().

Referenced by CSeqportUtil_implementation::AppendNcbi4na(), CSeqportUtil_implementation::ComplementNcbi4na(), CSeq_data::DoConstruct(), CWGSDb_Impl::SAmbiguityInfo::Get4na(), CSeqportUtil_implementation::GetAmbigs_ncbi4na_ncbi2na(), CSeqportUtil_implementation::GetNcbi4naCopy(), CSeqDBVol::GetSeqData(), CSeqportUtil_implementation::KeepNcbi4na(), CSeqportUtil_implementation::Pack(), CSeqportUtil_implementation::ReverseNcbi4na(), and s_AssignBufferToSeqData().

SetNcbi8aa()

CSeq_data_Base::TNcbi8aa & CSeq_data_Base::SetNcbi8aa ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 637 of file Seq_data_.hpp.

References CSeq_data_Base::e_Ncbi8aa, eDoNotResetVariant, CSeq_data_Base::m_Ncbi8aa, and CSeq_data_Base::Select().

Referenced by CSeq_data::DoConstruct().

SetNcbi8na()

CSeq_data_Base::TNcbi8na & CSeq_data_Base::SetNcbi8na ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 597 of file Seq_data_.hpp.

References CSeq_data_Base::e_Ncbi8na, eDoNotResetVariant, CSeq_data_Base::m_Ncbi8na, and CSeq_data_Base::Select().

Referenced by CSeq_data::DoConstruct().

SetNcbieaa() [1/2]

void CSeq_data_Base::SetNcbieaa

(

const TNcbieaa &

value

)

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 178 of file Seq_data_.cpp.

References CSeq_data_Base::e_Ncbieaa, eDoNotResetVariant, CSeq_data_Base::m_Ncbieaa, CSeq_data_Base::Select(), and rapidjson::value.

SetNcbieaa() [2/2]

CSeq_data_Base::TNcbieaa & CSeq_data_Base::SetNcbieaa ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 657 of file Seq_data_.hpp.

References CSeq_data_Base::e_Ncbieaa, eDoNotResetVariant, CSeq_data_Base::m_Ncbieaa, and CSeq_data_Base::Select().

Referenced by CSeqportUtil_implementation::AppendNcbieaa(), CSeq_inst::ConvertDeltaToRaw(), CSeq_data::DoConstruct(), ConsensusMaker::getConsensusSeqEntry(), CSeqportUtil_implementation::GetNcbieaaCopy(), CSeqportUtil_implementation::KeepNcbieaa(), PackSeqData(), CSeqAnnotFromFasta::PurgeNonAlphaFromSequence(), s_GetRnaRefLabel(), and CHgvsProtIrepReader::x_CreateProteinSubstVarref().

SetNcbipaa()

CSeq_data_Base::TNcbipaa & CSeq_data_Base::SetNcbipaa ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 677 of file Seq_data_.hpp.

References CSeq_data_Base::e_Ncbipaa, eDoNotResetVariant, CSeq_data_Base::m_Ncbipaa, and CSeq_data_Base::Select().

Referenced by CSeq_data::DoConstruct().

SetNcbipna()

CSeq_data_Base::TNcbipna & CSeq_data_Base::SetNcbipna ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 617 of file Seq_data_.hpp.

References CSeq_data_Base::e_Ncbipna, eDoNotResetVariant, CSeq_data_Base::m_Ncbipna, and CSeq_data_Base::Select().

Referenced by CSeq_data::DoConstruct().

SetNcbistdaa()

CSeq_data_Base::TNcbistdaa & CSeq_data_Base::SetNcbistdaa ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 697 of file Seq_data_.hpp.

References CSeq_data_Base::e_Ncbistdaa, eDoNotResetVariant, CSeq_data_Base::m_Ncbistdaa, and CSeq_data_Base::Select().

Referenced by CSeqportUtil_implementation::AppendNcbistdaa(), CSeq_data::DoConstruct(), CSeqportUtil_implementation::GetNcbistdaaCopy(), CSeqDBVol::GetSeqData(), CLocalBlastDbAdapter::GetSequence(), CSeqportUtil_implementation::KeepNcbistdaa(), CSeqAnnotFromFasta::PurgeNonAlphaFromSequence(), and s_CreateBioseq().

SetNum() [1/6]

void CPubdesc_Base::SetNum

(

CPubdesc_Base::TNum &

value

)

Assign a value to Num data member.

Parameters

value

Reference to value.

Definition at line 94 of file Pubdesc_.cpp.

References CPubdesc_Base::m_Num, and rapidjson::value.

Referenced by CAutogeneratedCleanup::x_BasicCleanupSeqFeat_data_data_pub_ETC(), and CAutogeneratedCleanup::x_BasicCleanupSeqFeatXrefPub().

SetNum() [2/6]

void CSeqdesc_Base::SetNum

(

CSeqdesc_Base::TNum &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 280 of file Seqdesc_.cpp.

References CObject::AddReference(), CSeqdesc_Base::e_Num, CSeqdesc_Base::m_choice, CSeqdesc_Base::m_object, CSeqdesc_Base::ResetSelection(), and rapidjson::value.

SetNum() [3/6]

void CNum_enum_Base::SetNum ( CNum_enum_Base::TNum  value )

inline

Assign a value to Num data member.

Parameters

value

Value to assign

Definition at line 224 of file Num_enum_.hpp.

References CNum_enum_Base::m_Num, CNum_enum_Base::m_set_State, and rapidjson::value.

SetNum() [4/6]

CNum_enum_Base::TNum & CNum_enum_Base::SetNum ( void  )

inline

Assign a value to Num data member.

Returns

Reference to the data value.

Definition at line 231 of file Num_enum_.hpp.

References CNum_enum_Base::IsSetNum(), CNum_enum_Base::m_Num, CNum_enum_Base::m_set_State, and CSerialObject::UnassignedByte().

SetNum() [5/6]

CPubdesc_Base::TNum & CPubdesc_Base::SetNum

(

void

)

Assign a value to Num data member.

Returns

Reference to the data value.

Definition at line 99 of file Pubdesc_.cpp.

References CPubdesc_Base::m_Num.

SetNum() [6/6]

CSeqdesc_Base::TNum & CSeqdesc_Base::SetNum

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 274 of file Seqdesc_.cpp.

References CSeqdesc_Base::e_Num, eDoNotResetVariant, CSeqdesc_Base::m_object, and CSeqdesc_Base::Select().

Referenced by CAutogeneratedCleanup::x_BasicCleanupBioseq_descr_descr_E(), and CAutogeneratedCleanup::x_BasicCleanupBioseqSetDesc().

SetNumexc() [1/2]

void CPubdesc_Base::SetNumexc ( CPubdesc_Base::TNumexc  value )

inline

Assign a value to Numexc data member.

Parameters

value

Value to assign

Definition at line 766 of file Pubdesc_.hpp.

References CPubdesc_Base::m_Numexc, CPubdesc_Base::m_set_State, and rapidjson::value.

SetNumexc() [2/2]

CPubdesc_Base::TNumexc & CPubdesc_Base::SetNumexc ( void  )

inline

Assign a value to Numexc data member.

Returns

Reference to the data value.

Definition at line 773 of file Pubdesc_.hpp.

References CPubdesc_Base::IsSetNumexc(), CPubdesc_Base::m_Numexc, CPubdesc_Base::m_set_State, and CSerialObject::UnassignedByte().

SetOrg() [1/2]

void CSeqdesc_Base::SetOrg

(

CSeqdesc_Base::TOrg &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 252 of file Seqdesc_.cpp.

References CObject::AddReference(), CSeqdesc_Base::e_Org, CSeqdesc_Base::m_choice, CSeqdesc_Base::m_object, CSeqdesc_Base::ResetSelection(), and rapidjson::value.

SetOrg() [2/2]

CSeqdesc_Base::TOrg & CSeqdesc_Base::SetOrg

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 246 of file Seqdesc_.cpp.

References CSeqdesc_Base::e_Org, eDoNotResetVariant, CSeqdesc_Base::m_object, and CSeqdesc_Base::Select().

Referenced by BOOST_AUTO_TEST_CASE(), CopyOrg(), CFindASN1Dlg::ReplaceInDesc(), CRemoteUpdater::UpdateOrgFromTaxon(), CAutogeneratedCleanup::x_BasicCleanupBioseq_descr_descr_E(), CAutogeneratedCleanup::x_BasicCleanupBioseqSetDesc(), CNewCleanup_imp::x_CopyGBBlockDivToOrgnameDiv(), and CAutogeneratedExtendedCleanup::x_ExtendedCleanupSeqdesc().

SetOther() [1/2]

void CAnnot_id_Base::SetOther

(

CAnnot_id_Base::TOther &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 168 of file Annot_id_.cpp.

References CObject::AddReference(), CAnnot_id_Base::e_Other, CAnnot_id_Base::m_choice, CAnnot_id_Base::m_object, CAnnot_id_Base::ResetSelection(), and rapidjson::value.

SetOther() [2/2]

CAnnot_id_Base::TOther & CAnnot_id_Base::SetOther

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 162 of file Annot_id_.cpp.

References CAnnot_id_Base::e_Other, eDoNotResetVariant, CAnnot_id_Base::m_object, and CAnnot_id_Base::Select().

SetPdb() [1/2]

void CSeqdesc_Base::SetPdb

(

CSeqdesc_Base::TPdb &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 550 of file Seqdesc_.cpp.

References CObject::AddReference(), CSeqdesc_Base::e_Pdb, CSeqdesc_Base::m_choice, CSeqdesc_Base::m_object, CSeqdesc_Base::ResetSelection(), and rapidjson::value.

SetPdb() [2/2]

CSeqdesc_Base::TPdb & CSeqdesc_Base::SetPdb

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 544 of file Seqdesc_.cpp.

References CSeqdesc_Base::e_Pdb, eDoNotResetVariant, CSeqdesc_Base::m_object, and CSeqdesc_Base::Select().

Referenced by BOOST_FIXTURE_TEST_CASE(), GetPDBBlockFromSeqEntry(), CAutogeneratedCleanup::x_BasicCleanupBioseq_descr_descr_E(), and CAutogeneratedCleanup::x_BasicCleanupBioseqSetDesc().

SetPir() [1/2]

void CSeqdesc_Base::SetPir

(

CSeqdesc_Base::TPir &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 324 of file Seqdesc_.cpp.

References CObject::AddReference(), CSeqdesc_Base::e_Pir, CSeqdesc_Base::m_choice, CSeqdesc_Base::m_object, CSeqdesc_Base::ResetSelection(), and rapidjson::value.

SetPir() [2/2]

CSeqdesc_Base::TPir & CSeqdesc_Base::SetPir

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 318 of file Seqdesc_.cpp.

References CSeqdesc_Base::e_Pir, eDoNotResetVariant, CSeqdesc_Base::m_object, and CSeqdesc_Base::Select().

Referenced by BOOST_FIXTURE_TEST_CASE(), CAutogeneratedCleanup::x_BasicCleanupBioseq_descr_descr_E(), and CAutogeneratedCleanup::x_BasicCleanupBioseqSetDesc().

SetPoly_a() [1/2]

void CPubdesc_Base::SetPoly_a ( CPubdesc_Base::TPoly_a  value )

inline

Assign a value to Poly_a data member.

Parameters

value

Value to assign

Definition at line 813 of file Pubdesc_.hpp.

References CPubdesc_Base::m_Poly_a, CPubdesc_Base::m_set_State, and rapidjson::value.

SetPoly_a() [2/2]

CPubdesc_Base::TPoly_a & CPubdesc_Base::SetPoly_a ( void  )

inline

Assign a value to Poly_a data member.

Returns

Reference to the data value.

Definition at line 820 of file Pubdesc_.hpp.

References CPubdesc_Base::IsSetPoly_a(), CPubdesc_Base::m_Poly_a, CPubdesc_Base::m_set_State, and CSerialObject::UnassignedByte().

SetPrf() [1/2]

void CSeqdesc_Base::SetPrf

(

CSeqdesc_Base::TPrf &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 528 of file Seqdesc_.cpp.

References CObject::AddReference(), CSeqdesc_Base::e_Prf, CSeqdesc_Base::m_choice, CSeqdesc_Base::m_object, CSeqdesc_Base::ResetSelection(), and rapidjson::value.

SetPrf() [2/2]

CSeqdesc_Base::TPrf & CSeqdesc_Base::SetPrf

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 522 of file Seqdesc_.cpp.

References CSeqdesc_Base::e_Prf, eDoNotResetVariant, CSeqdesc_Base::m_object, and CSeqdesc_Base::Select().

Referenced by BOOST_FIXTURE_TEST_CASE().

SetPub() [1/6]

void CAnnotdesc_Base::SetPub

(

CAnnotdesc_Base::TPub &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 174 of file Annotdesc_.cpp.

References CObject::AddReference(), CAnnotdesc_Base::e_Pub, CAnnotdesc_Base::m_choice, CAnnotdesc_Base::m_object, CAnnotdesc_Base::ResetSelection(), and rapidjson::value.

SetPub() [2/6]

void CPubdesc_Base::SetPub

(

CPubdesc_Base::TPub &

value

)

Assign a value to Pub data member.

Parameters

value

Reference to value.

Definition at line 72 of file Pubdesc_.cpp.

References CPubdesc_Base::m_Pub, and rapidjson::value.

Referenced by AddGoodPub(), CGlobalPubmedIdLookup::apply(), CDiscrepancyVisitorImpl< _Name >::Autofix(), BOOST_AUTO_TEST_CASE(), BuildGoodPubSeqdesc(), CCleanupPub::CleanPubdesc(), CTable2AsnContext::CreateSeqEntryFromTemplate(), IEditingActionDesc::Find(), IEditingActionDesc::FindRelated(), CReplaceEntirePubPanel::GetCommand(), CAuthorReplacePanel::GetCommand(), GetSegPub(), handler_eErr_GENERIC_MissingPubRequirement(), CMultiReader::LoadTemplate(), CEditingActionDescPubTitle::Modify(), CEditingActionDescPubPmid::Modify(), IEditingActionDescAffil::Modify(), IEditingActionDescAuthors::Modify(), IEditingActionDescJournal::Modify(), CEditingActionDescAuthorNameList::Modify(), CDesktopViewContext::OnPasteSelection(), CAuthorNamesPanel::OnReplaceAllAuthors(), CAuthorNamesPanel::OnReplaceSameAuthors(), CRemoteUpdater::PostProcessPubs(), CNewCleanup_imp::PubdescBC(), CFindASN1Dlg::ReplaceInPubdesc(), CCleanup::RescueSiteRefPubs(), CTestRemoteUpdaterApplication::Run(), s_ApplyPubMods(), s_EmptyAfterRemovingPMID(), s_GetPubVolIssuePagesDateObjects(), CMacroFunction_SetPubStatus::s_SetStatus(), SeqEntryFromSeqSubmit(), SetAuthList(), SetAuthorNames(), CPubField::SetPubTitle(), CEditingActionDescPubPmid::SetValue(), CCitSubUpdater::sx_GetCitSubForSequence(), CMacroFunction_ApplyPublication::TheFunction(), CMacroFunction_AuthorFix::TheFunction(), CMacroFunction_ISOJTALookup::TheFunction(), CMacroFunction_LookupPub::TheFunction(), CMacroFunction_SetPubAffil::TheFunction(), CMacroFunction_SetPubAuthor::TheFunction(), CMacroFunction_AddAuthorList::TheFunction(), CRemarksAndSerialNumberPanel::TransferDataFromWindow(), CMacroFunction_AddPubAuthor::x_AddAuthorInPubdesc(), CMacroFunction_AddAuthorList::x_AddAuthorListInPubdesc(), IAuthorEditor::x_ApplyToPubdesc(), CRemoveUnpublishedPubs::x_ApplyToPubdesc(), CRemoveInPressPubs::x_ApplyToPubdesc(), CRemovePublishedPubs::x_ApplyToPubdesc(), CRemoveAllPubs::x_ApplyToPubdesc(), CAutogeneratedCleanup::x_BasicCleanupSeqFeat_data_data_pub_ETC(), CAutogeneratedCleanup::x_BasicCleanupSeqFeatXrefPub(), CRelaxedLookupDlg::x_GetPubIdsEutils(), CSubmissionWizard::x_InitializeDescriptorList(), CAgpconvertApplication::x_LoadTemplate(), CMacroFunction_SetPubJournal::x_RemoveJournalInPubdesc(), CMacroFunction_SetPubAuthor::x_SetAuthorInPubdesc(), CMacroFunction_SetPubJournal::x_SetJournalInPubdesc(), and CMacroFunction_SetPubTitle::x_SetTitleInPubdesc().

SetPub() [3/6]

void CSeqdesc_Base::SetPub

(

CSeqdesc_Base::TPub &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 368 of file Seqdesc_.cpp.

References CObject::AddReference(), CSeqdesc_Base::e_Pub, CSeqdesc_Base::m_choice, CSeqdesc_Base::m_object, CSeqdesc_Base::ResetSelection(), and rapidjson::value.

SetPub() [4/6]

CAnnotdesc_Base::TPub & CAnnotdesc_Base::SetPub

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 168 of file Annotdesc_.cpp.

References CAnnotdesc_Base::e_Pub, eDoNotResetVariant, CAnnotdesc_Base::m_object, and CAnnotdesc_Base::Select().

Referenced by CAutogeneratedCleanup::x_BasicCleanupBioseqSet_annot_E_E_desc_desc_E_ETC().

SetPub() [5/6]

CPubdesc_Base::TPub & CPubdesc_Base::SetPub ( void  )

inline

Assign a value to Pub data member.

Returns

Reference to the data value.

Definition at line 614 of file Pubdesc_.hpp.

References CPubdesc_Base::m_Pub, and CPubdesc_Base::ResetPub().

SetPub() [6/6]

CSeqdesc_Base::TPub & CSeqdesc_Base::SetPub

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 362 of file Seqdesc_.cpp.

References CSeqdesc_Base::e_Pub, eDoNotResetVariant, CSeqdesc_Base::m_object, and CSeqdesc_Base::Select().

Referenced by AddGoodPub(), CConvertFeatToDescPub::apply(), CGlobalPubmedIdLookup::apply(), CReverseAuthorNames::ApplyToPubdesc(), CDiscrepancyVisitorImpl< _Name >::Autofix(), BOOST_AUTO_TEST_CASE(), BuildGoodPubSeqdesc(), CPubField::ClearVal(), CCleanup::ConvertPubFeatsToPubDescs(), CSequenceEditingEventHandler::CreateDescriptor(), CTable2AsnContext::CreateSeqEntryFromTemplate(), CEditObjectSeq_desc::CreateWindow(), IEditingActionDesc::Find(), IEditingActionDesc::FindRelated(), CReplaceSectionPanel::GetCommand(), CReplaceEntirePubPanel::GetCommand(), CAuthorReplacePanel::GetCommand(), GetEmblDescr(), GetGenBankDescr(), GetSprotDescr(), handler_eErr_GENERIC_MissingPubRequirement(), handler_eErr_SEQ_DESCR_NoPubFound(), CMultiReader::LoadDescriptors(), CMultiReader::LoadTemplate(), CEditingActionDescPubTitle::Modify(), CEditingActionDescPubPmid::Modify(), IEditingActionDescAffil::Modify(), IEditingActionDescAuthors::Modify(), IEditingActionDescJournal::Modify(), CEditingActionDescAuthorNameList::Modify(), CBioseqEditor::OnCreateDescriptor(), CDesktopViewContext::OnPasteSelection(), CAuthorNamesPanel::OnReplaceAllAuthors(), CAuthorNamesPanel::OnReplaceSameAuthors(), CFindASN1Dlg::ReplaceInDesc(), CCleanup::RescueSiteRefPubs(), CTestRemoteUpdaterApplication::Run(), CMacroBioData_PubdescIter::RunEditCommand(), s_ApplyPubMods(), s_EmptyAfterRemovingPMID(), s_MakeNewPubdesc(), SeqEntryFromSeqSubmit(), CEditingActionDescPubPmid::SetValue(), CCitSubUpdater::sx_GetCitSubForSequence(), CMacroFunction_ApplyPublication::TheFunction(), CMacroFunction_LookupPub::TheFunction(), IPubDescEditor::x_ApplyToDescriptors(), IRemovePubs::x_ApplyToDescriptors(), CAutogeneratedCleanup::x_BasicCleanupBioseq_descr_descr_E(), CAutogeneratedCleanup::x_BasicCleanupBioseqSetDesc(), CAutogeneratedExtendedCleanup::x_ExtendedCleanupSeqdesc(), CFlatGatherer::x_GatherReferences(), CRelaxedLookupDlg::x_GetPubIdsEutils(), CSubmissionWizard::x_InitializeDescriptorList(), CAgpconvertApplication::x_LoadTemplate(), and XMLGetDescr().

SetReal() [1/2]

void CNumbering_Base::SetReal

(

CNumbering_Base::TReal &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 192 of file Numbering_.cpp.

References CObject::AddReference(), CNumbering_Base::e_Real, CNumbering_Base::m_choice, CNumbering_Base::m_object, CNumbering_Base::ResetSelection(), and rapidjson::value.

SetReal() [2/2]

CNumbering_Base::TReal & CNumbering_Base::SetReal

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 186 of file Numbering_.cpp.

References CNumbering_Base::e_Real, eDoNotResetVariant, CNumbering_Base::m_object, and CNumbering_Base::Select().

SetRef() [1/4]

void CNumbering_Base::SetRef

(

CNumbering_Base::TRef &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 170 of file Numbering_.cpp.

References CObject::AddReference(), CNumbering_Base::e_Ref, CNumbering_Base::m_choice, CNumbering_Base::m_object, CNumbering_Base::ResetSelection(), and rapidjson::value.

SetRef() [2/4]

void CSeq_ext_Base::SetRef

(

CSeq_ext_Base::TRef &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 148 of file Seq_ext_.cpp.

References CObject::AddReference(), CSeq_ext_Base::e_Ref, CSeq_ext_Base::m_choice, CSeq_ext_Base::m_object, CSeq_ext_Base::ResetSelection(), and rapidjson::value.

SetRef() [3/4]

CNumbering_Base::TRef & CNumbering_Base::SetRef

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 164 of file Numbering_.cpp.

References CNumbering_Base::e_Ref, eDoNotResetVariant, CNumbering_Base::m_object, and CNumbering_Base::Select().

Referenced by CAutogeneratedCleanup::x_BasicCleanupNumbering().

SetRef() [4/4]

CSeq_ext_Base::TRef & CSeq_ext_Base::SetRef

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 142 of file Seq_ext_.cpp.

References CSeq_ext_Base::e_Ref, eDoNotResetVariant, CSeq_ext_Base::m_object, and CSeq_ext_Base::Select().

Referenced by CModifySeqId::GetCommand(), and CAutogeneratedCleanup::x_BasicCleanupSeqExt().

SetRefnum() [1/2]

void CNum_cont_Base::SetRefnum ( CNum_cont_Base::TRefnum  value )

inline

Assign a value to Refnum data member.

Parameters

value

Value to assign

Definition at line 278 of file Num_cont_.hpp.

References CNum_cont_Base::m_Refnum, CNum_cont_Base::m_set_State, and rapidjson::value.

SetRefnum() [2/2]

CNum_cont_Base::TRefnum & CNum_cont_Base::SetRefnum ( void  )

inline

Assign a value to Refnum data member.

Returns

Reference to the data value.

Definition at line 285 of file Num_cont_.hpp.

References CNum_cont_Base::IsSetRefnum(), CNum_cont_Base::m_Refnum, CNum_cont_Base::m_set_State, and CSerialObject::UnassignedByte().

SetReftype() [1/2]

void CPubdesc_Base::SetReftype ( CPubdesc_Base::TReftype  value )

inline

Assign a value to Reftype data member.

Parameters

value

Value to assign

Definition at line 1051 of file Pubdesc_.hpp.

References CPubdesc_Base::m_Reftype, CPubdesc_Base::m_set_State, and rapidjson::value.

Referenced by CCleanup::RescueSiteRefPubs().

SetReftype() [2/2]

CPubdesc_Base::TReftype & CPubdesc_Base::SetReftype ( void  )

inline

Assign a value to Reftype data member.

Returns

Reference to the data value.

Definition at line 1058 of file Pubdesc_.hpp.

References CPubdesc_Base::IsSetReftype(), CPubdesc_Base::m_Reftype, CPubdesc_Base::m_set_State, and CSerialObject::UnassignedByte().

SetRegion() [1/4]

void CSeqdesc_Base::SetRegion

(

const TRegion &

value

)

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 378 of file Seqdesc_.cpp.

References CSeqdesc_Base::e_Region, eDoNotResetVariant, CSeqdesc_Base::m_string, CSeqdesc_Base::Select(), and rapidjson::value.

SetRegion() [2/4]

void CAnnotdesc_Base::SetRegion

(

CAnnotdesc_Base::TRegion &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 306 of file Annotdesc_.cpp.

References CObject::AddReference(), CAnnotdesc_Base::e_Region, CAnnotdesc_Base::m_choice, CAnnotdesc_Base::m_object, CAnnotdesc_Base::ResetSelection(), and rapidjson::value.

SetRegion() [3/4]

CAnnotdesc_Base::TRegion & CAnnotdesc_Base::SetRegion

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 300 of file Annotdesc_.cpp.

References CAnnotdesc_Base::e_Region, eDoNotResetVariant, CAnnotdesc_Base::m_object, and CAnnotdesc_Base::Select().

Referenced by CFindRSites::GetAnnot(), MakeCompartment(), CAnnotationASN1::CImplementationData::ResetASN1(), CAutogeneratedCleanup::x_BasicCleanupBioseqSet_annot_E_E_desc_desc_E_ETC(), and CReaderBase::xSetBrowserRegion().

SetRegion() [4/4]

CSeqdesc_Base::TRegion & CSeqdesc_Base::SetRegion ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 1115 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Region, eDoNotResetVariant, CSeqdesc_Base::m_string, and CSeqdesc_Base::Select().

Referenced by BOOST_AUTO_TEST_CASE(), CBioseqEditor::OnCreateDescriptor(), CFindASN1Dlg::ReplaceInDesc(), CAutogeneratedCleanup::x_BasicCleanupBioseq_descr_descr_E(), and CAutogeneratedCleanup::x_BasicCleanupBioseqSetDesc().

SetRelease() [1/3]

void CTextannot_id_Base::SetRelease ( const TRelease &  value )

inline

Assign a value to Release data member.

Parameters

value

Value to assign

Definition at line 402 of file Textannot_id_.hpp.

References CTextannot_id_Base::m_Release, CTextannot_id_Base::m_set_State, and rapidjson::value.

SetRelease() [2/3]

void CTextannot_id_Base::SetRelease ( CTextannot_id_Base::TRelease &&  value )

inline

Definition at line 409 of file Textannot_id_.hpp.

References CTextannot_id_Base::m_Release, CTextannot_id_Base::m_set_State, and rapidjson::value.

SetRelease() [3/3]

CTextannot_id_Base::TRelease & CTextannot_id_Base::SetRelease ( void  )

inline

Assign a value to Release data member.

Returns

Reference to the data value.

Definition at line 416 of file Textannot_id_.hpp.

References CTextannot_id_Base::IsSetRelease(), CTextannot_id_Base::m_Release, CTextannot_id_Base::m_set_State, and CSerialObject::UnassignedString().

SetReplaced_by() [1/2]

void CSeq_hist_Base::SetReplaced_by

(

CSeq_hist_Base::TReplaced_by &

value

)

Assign a value to Replaced_by data member.

Parameters

value

Reference to value.

Definition at line 179 of file Seq_hist_.cpp.

References CSeq_hist_Base::m_Replaced_by, and rapidjson::value.

Referenced by CModifySeqId::GetCommand(), CWGSProteinIterator::GetSeq_inst(), and CAutogeneratedCleanup::x_BasicCleanupSeqHist().

SetReplaced_by() [2/2]

CSeq_hist_Base::TReplaced_by & CSeq_hist_Base::SetReplaced_by

(

void

)

Assign a value to Replaced_by data member.

Returns

Reference to the data value.

Definition at line 184 of file Seq_hist_.cpp.

References CSeq_hist_Base::m_Replaced_by.

SetReplaces() [1/2]

void CSeq_hist_Base::SetReplaces

(

CSeq_hist_Base::TReplaces &

value

)

Assign a value to Replaces data member.

Parameters

value

Reference to value.

Definition at line 162 of file Seq_hist_.cpp.

References CSeq_hist_Base::m_Replaces, and rapidjson::value.

Referenced by CModifySeqId::GetCommand(), CWGSProteinIterator::GetSeq_inst(), GetSprotDescr(), SPAppendPIRToHist(), and CAutogeneratedCleanup::x_BasicCleanupSeqHist().

SetReplaces() [2/2]

CSeq_hist_Base::TReplaces & CSeq_hist_Base::SetReplaces

(

void

)

Assign a value to Replaces data member.

Returns

Reference to the data value.

Definition at line 167 of file Seq_hist_.cpp.

References CSeq_hist_Base::m_Replaces.

SetRepr() [1/2]

void CSeq_inst_Base::SetRepr ( CSeq_inst_Base::TRepr  value )

inline

Assign a value to Repr data member.

Parameters

value

Value to assign

Definition at line 574 of file Seq_inst_.hpp.

References CSeq_inst_Base::m_Repr, CSeq_inst_Base::m_set_State, and rapidjson::value.

Referenced by AgpRead(), CFastaReader::AssembleSeq(), CBioseq::CBioseq(), CGapsEditor::ConvertNs2Gaps(), ConvertRawToDeltaByNs(), CBlobSplitterImpl::CopySequence(), CVDBBlastUtil::CreateBioseqFromOid(), CVDBBlastUtil::CreateBioseqFromVDBSeqId(), CAlnVec::CreateConsensus(), CRawSeqToDeltaByN::DeltaSeqToRaw(), CSeqDBVol::GetBioseq(), GetBioseq(), ConsensusMaker::getConsensusSeqEntry(), GetEmblInst(), GetGenBankInst(), CWGSDb_Impl::GetMasterSeq_entry(), CCSraRefSeqIterator::GetRefBioseq(), CWGSScaffoldIterator::GetSeq_inst(), CWGSProteinIterator::GetSeq_inst(), CCSraShortReadIterator::GetShortBioseq(), CBamAlignIterator::GetShortBioseq(), CCSraAlignIterator::GetShortBioseq(), CSraRun::GetSpotEntry(), LoadSequencesToScope(), CMakeCdrProds::MakeCdrProds(), MakeMaskingBioseq(), CBam2Seq_graph::MakeSeq_entry(), CAgpToSeqEntry::OnGapOrComponent(), CBioseq::PackAsDeltaSeq(), CBam2GraphApp::ProcessFile(), CGlimmerReader::Read(), s_FixBioseqDeltas(), CSequenceUpdater::s_UpdateSeqInst(), SeqLocToBioseq(), CCachedSequence::SplitSeqData(), TrimSeqData(), CFeatureGenerator::SImplementation::x_CollectMrnaSequence(), CFeatureGenerator::SImplementation::x_CreateProteinBioseq(), CSeqMap::x_DoUpdateSeq_inst(), CWGSSeqIterator::x_GetSeq_inst(), CUpdateSeq_Input::x_ReadAccession(), CSequenceUpdater::x_ReplaceSequence(), CWGSSeqIterator::x_SetDelta(), CWGSSeqIterator::x_SetDeltaOrData(), CVectorTrimPanel::x_SetSeqData(), CSequenceAmbigTrimmer::x_SliceBioseq(), CSequenceAmbigTrimmer::x_TrimToNothing(), and XMLGetInst().

SetRepr() [2/2]

CSeq_inst_Base::TRepr & CSeq_inst_Base::SetRepr ( void  )

inline

Assign a value to Repr data member.

Returns

Reference to the data value.

Definition at line 581 of file Seq_inst_.hpp.

References CSeq_inst_Base::IsSetRepr(), CSeq_inst_Base::m_Repr, CSeq_inst_Base::m_set_State, and CSerialObject::UnassignedByte().

Referenced by CSeq_inst::ConvertDeltaToRaw().

SetSeg() [1/2]

void CSeq_ext_Base::SetSeg

(

CSeq_ext_Base::TSeg &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 126 of file Seq_ext_.cpp.

References CObject::AddReference(), CSeq_ext_Base::e_Seg, CSeq_ext_Base::m_choice, CSeq_ext_Base::m_object, CSeq_ext_Base::ResetSelection(), and rapidjson::value.

SetSeg() [2/2]

CSeq_ext_Base::TSeg & CSeq_ext_Base::SetSeg

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 120 of file Seq_ext_.cpp.

References CSeq_ext_Base::e_Seg, eDoNotResetVariant, CSeq_ext_Base::m_object, and CSeq_ext_Base::Select().

Referenced by CModifySeqId::GetCommand(), s_AddPartToSegmentedBioseq(), and CAutogeneratedCleanup::x_BasicCleanupSeqExt().

SetSeq_data() [1/4]

void CSeq_inst_Base::SetSeq_data

(

CSeq_inst_Base::TSeq_data &

value

)

Assign a value to Seq_data data member.

Parameters

value

Reference to value.

Definition at line 130 of file Seq_inst_.cpp.

References CSeq_inst_Base::m_Seq_data, and rapidjson::value.

Referenced by AddLiteral(), CFastaReader::AssembleSeq(), CBlobSplitterImpl::AttachToSkeleton(), CPhrap_Seq::CreateBioseq(), CVDBBlastUtil::CreateBioseqFromOid(), CVDBBlastUtil::CreateBioseqFromVDBSeqId(), CAlnVec::CreateConsensus(), CRawSeqToDeltaByN::DeltaSeqToRaw(), CAdjustForConsensusSpliceSite::GetCommandToAdjustCDSEnds(), ConsensusMaker::getConsensusSeqEntry(), CWGSProteinIterator::GetSeq_inst(), CCSraShortReadIterator::GetShortBioseq(), CBamAlignIterator::GetShortBioseq(), CCSraAlignIterator::GetShortBioseq(), CSraRun::GetSpotEntry(), PssmMaker::getTrunctMaster(), CMakeCdrProds::MakeCdrProds(), MakeEntryForDeltaConversion(), CGlimmerReader::Read(), ReverseComplement(), s_FixBioseqDeltas(), s_SeqDBWriteSeqDataNucl(), s_SeqDBWriteSeqDataProt(), CSequenceUpdater::s_UpdateSeqInst(), SeqLocToBioseq(), SetNewProteinSequence(), TrimSeqData(), TrimStopsFromCompleteCDS(), CCleanup::WGSCleanup(), CFeatureGenerator::SImplementation::x_CollectMrnaSequence(), CFeatureGenerator::SImplementation::x_CreateProteinBioseq(), CSeqMap::x_DoUpdateSeq_inst(), CWGSSeqIterator::x_GetSeq_inst(), CUpdateSeq_Input::x_ReadAccession(), CSequenceUpdater::x_ReplaceSequence(), CVectorTrimPanel::x_RetranslateCDS(), CSequenceUpdater::x_RetranslateImportedCDSProduct(), CSequenceUpdater::x_RetranslateOldCDSProduct(), CWGSSeqIterator::x_SetDeltaOrData(), CVectorTrimPanel::x_SetSeqData(), CSequenceAmbigTrimmer::x_SliceBioseq(), and CForeignContaminationScreenReportReader::xTrimData().

SetSeq_data() [2/4]

void CSeq_literal_Base::SetSeq_data

(

CSeq_literal_Base::TSeq_data &

value

)

Assign a value to Seq_data data member.

Parameters

value

Reference to value.

Definition at line 74 of file Seq_literal_.cpp.

References CSeq_literal_Base::m_Seq_data, and rapidjson::value.

Referenced by CDelta_ext::AddAndSplit(), AddLiteral(), BOOST_AUTO_TEST_CASE(), CBlobSplitterImpl::CopySequence(), CreateSeqDataChunk(), CreateSeqGap(), CRemoteBlastDbDataLoader::GetChunks(), CAddLinkageToGaps::GetCommand(), ReverseComplement(), variation_ref::CVariationUtil::s_CatLiterals(), variation::CVariationUtil::s_CatLiterals(), CDelta_item::SetInsertion(), variation::CHgvsParser::x_AsHgvsExpression(), CHgvsNaIrepReader::x_CreateSSRVarref(), CSeqMap::x_DoUpdateSeq_inst(), variation_ref::CHgvsParser::x_expr2(), CWGSSeqIterator::x_GetSegmentsWithExplicitGaps(), CWGSSeqIterator::x_GetSegmentsWithRecoveredGaps(), CGapsEditor::x_SetGapParameters(), CVariationNormalization_base< T >::x_Shift(), CVcfReader::xAssignVariantDelins(), CVcfReader::xAssignVariantIns(), and CForeignContaminationScreenReportReader::xTrimLiteral().

SetSeq_data() [3/4]

CSeq_inst_Base::TSeq_data & CSeq_inst_Base::SetSeq_data

(

void

)

Assign a value to Seq_data data member.

Returns

Reference to the data value.

Definition at line 135 of file Seq_inst_.cpp.

References CSeq_inst_Base::m_Seq_data.

Referenced by CSeq_inst::ConvertDeltaToRaw().

SetSeq_data() [4/4]

CSeq_literal_Base::TSeq_data & CSeq_literal_Base::SetSeq_data

(

void

)

Assign a value to Seq_data data member.

Returns

Reference to the data value.

Definition at line 79 of file Seq_literal_.cpp.

References CSeq_literal_Base::m_Seq_data.

SetSeq_raw() [1/3]

void CPubdesc_Base::SetSeq_raw ( const TSeq_raw &  value )

inline

Assign a value to Seq_raw data member.

Parameters

value

Value to assign

Definition at line 900 of file Pubdesc_.hpp.

References CPubdesc_Base::m_Seq_raw, CPubdesc_Base::m_set_State, and rapidjson::value.

SetSeq_raw() [2/3]

void CPubdesc_Base::SetSeq_raw ( CPubdesc_Base::TSeq_raw &&  value )

inline

Definition at line 907 of file Pubdesc_.hpp.

References CPubdesc_Base::m_Seq_raw, CPubdesc_Base::m_set_State, and rapidjson::value.

SetSeq_raw() [3/3]

CPubdesc_Base::TSeq_raw & CPubdesc_Base::SetSeq_raw ( void  )

inline

Assign a value to Seq_raw data member.

Returns

Reference to the data value.

Definition at line 914 of file Pubdesc_.hpp.

References CPubdesc_Base::IsSetSeq_raw(), CPubdesc_Base::m_Seq_raw, CPubdesc_Base::m_set_State, and CSerialObject::UnassignedString().

SetSeq_table() [1/2]

void CSeq_annot_Base::C_Data::SetSeq_table

(

TSeq_table &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 165 of file Seq_annot_.cpp.

References CObject::AddReference(), and rapidjson::value.

SetSeq_table() [2/2]

CSeq_annot_Base::C_Data::TSeq_table & CSeq_annot_Base::C_Data::SetSeq_table

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 159 of file Seq_annot_.cpp.

References eDoNotResetVariant.

Referenced by CTableAnnotDataSource::AddSeqLoc(), CTableAnnotDataSource::AddSnpSeqLoc(), CTableAnnotDataSource::CreateFeature(), CTableAnnotDataSource::CreateSnpFeature(), CTableAnnotDataSource::CreateSnps(), CTableAnnotDataSource::FindLocations(), CTableAnnotDataSource::RemoveSeqLocs(), and CAutogeneratedCleanup::x_BasicCleanupSeqAnnotData().

SetSource() [1/2]

void CSeqdesc_Base::SetSource

(

CSeqdesc_Base::TSource &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 578 of file Seqdesc_.cpp.

References CObject::AddReference(), CSeqdesc_Base::e_Source, CSeqdesc_Base::m_choice, CSeqdesc_Base::m_object, CSeqdesc_Base::ResetSelection(), and rapidjson::value.

SetSource() [2/2]

CSeqdesc_Base::TSource & CSeqdesc_Base::SetSource

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 572 of file Seqdesc_.cpp.

References CSeqdesc_Base::e_Source, eDoNotResetVariant, CSeqdesc_Base::m_object, and CSeqdesc_Base::Select().

Referenced by AddGoodSource(), AddOrgmodDescriptor(), AddSource(), AddStrainDescriptor(), CConvertFeatToDescSource::apply(), CApplyFBOL::apply(), CMergeBiosources::apply(), COrgGeneralPanel::ApplyCommand(), CBarcodeTool::ApplyDbxrefs(), ApplySrcTableToSeqEntry(), CProSplign::AssignGeneticCode(), CDiscrepancyVisitorImpl< _Name >::Autofix(), BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), BuildGoodSegSet(), CachedTaxonomyLookupCommand(), CCleanup::CleanupCollectionDates(), CSrcTableColumnBase::ClearVal(), CCleanup::ConvertSrcFeatsToSrcDescs(), CSequenceEditingEventHandler::CreateDescriptor(), FakeEmblBioSources(), FakeGenBankBioSources(), IEditingActionBiosource::Find(), IEditingAction::GetActionCommand(), GetChangeStrainForwardingCommand(), CUnculTaxTool::GetCommandFromValuesTable(), GetRmCultureNotesCommand(), GetSprotDescr(), LaunchSrcEditor(), LoadFeat(), CCompareWithBiosample::OnClickOk(), CBioseqEditor::OnCreateBiosourceDesc(), CBioseqEditor::OnCreateDescriptor(), CFindASN1Dlg::ReplaceInDesc(), CAgpconvertApplication::Run(), CMacroBioData_BioSourceIter::RunEditCommand(), IEditingActionBiosource::SetDesc(), CMiscSeqTableColumn::SetVal(), SpecificHostCleanupCommand(), CCleanup::TaxonomyLookup(), TaxonomyLookupCommand(), CMacroFunction_MakeBoldXrefs::TheFunction(), CBiosampleChkApp::UpdateBioSource(), CRemoteUpdater::UpdateOrgFromTaxon(), CSrcDescEditorPanel::UpdateSeqdesc(), USING_SCOPE(), CSubmissionWizard::x_ApplySourceDescriptorToRecord(), CAppendModToOrg::x_ApplyToDescriptors(), CApplyGCode::x_ApplyToDescriptors(), CCountryConflict::x_ApplyToDescriptors(), CCountryFixup::x_ApplyToDescriptors(), CLatLonTool::x_ApplyToDescriptors(), IModifyBiosourceQuals::x_ApplyToDescriptors(), CAutogeneratedCleanup::x_BasicCleanupBioseq_descr_descr_E(), CAutogeneratedCleanup::x_BasicCleanupBioseqSetDesc(), CNewCleanup_imp::x_CopyGBBlockDivToOrgnameDiv(), CAutogeneratedExtendedCleanup::x_ExtendedCleanupSeqdesc(), CFlatGatherer::x_GatherSourceOrganism(), CSeqDBVol::x_GetTaxonomy(), CAgpconvertApplication::x_HandleTaxArgs(), CSubmissionWizard::x_InitializeDescriptorList(), CNewCleanup_imp::x_MoveNpSrc(), CNewCleanup_imp::x_MoveSeqdescOrgToSourceOrg(), CStrainSerotypeInfluenza::x_ParseDescriptors(), CNewCleanup_imp::x_RemoveOldFeatures(), CNewCleanup_imp::x_RemovePopPhyBioSource(), CAgpConverter::x_SetChromosomeNameInSourceSubtype(), and XMLFakeBioSources().

SetSp() [1/2]

void CSeqdesc_Base::SetSp

(

CSeqdesc_Base::TSp &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 418 of file Seqdesc_.cpp.

References CObject::AddReference(), CSeqdesc_Base::e_Sp, CSeqdesc_Base::m_choice, CSeqdesc_Base::m_object, CSeqdesc_Base::ResetSelection(), and rapidjson::value.

SetSp() [2/2]

CSeqdesc_Base::TSp & CSeqdesc_Base::SetSp

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 412 of file Seqdesc_.cpp.

References CSeqdesc_Base::e_Sp, eDoNotResetVariant, CSeqdesc_Base::m_object, and CSeqdesc_Base::Select().

Referenced by BOOST_FIXTURE_TEST_CASE(), GetDescrSPBlock(), CAutogeneratedCleanup::x_BasicCleanupBioseq_descr_descr_E(), and CAutogeneratedCleanup::x_BasicCleanupBioseqSetDesc().

SetSrc() [1/2]

void CAnnotdesc_Base::SetSrc

(

CAnnotdesc_Base::TSrc &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 262 of file Annotdesc_.cpp.

References CObject::AddReference(), CAnnotdesc_Base::e_Src, CAnnotdesc_Base::m_choice, CAnnotdesc_Base::m_object, CAnnotdesc_Base::ResetSelection(), and rapidjson::value.

SetSrc() [2/2]

CAnnotdesc_Base::TSrc & CAnnotdesc_Base::SetSrc

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 256 of file Annotdesc_.cpp.

References CAnnotdesc_Base::e_Src, eDoNotResetVariant, CAnnotdesc_Base::m_object, and CAnnotdesc_Base::Select().

Referenced by CAutogeneratedCleanup::x_BasicCleanupBioseqSet_annot_E_E_desc_desc_E_ETC(), and CVcfLoadingJob::x_CreateColumnarVCFProjectItem().

SetStrand() [1/2]

void CSeq_inst_Base::SetStrand ( CSeq_inst_Base::TStrand  value )

inline

Assign a value to Strand data member.

Parameters

value

Value to assign

Definition at line 786 of file Seq_inst_.hpp.

References CSeq_inst_Base::m_set_State, CSeq_inst_Base::m_Strand, and rapidjson::value.

Referenced by CMolInfoEditDlg::ApplyToInst(), CBlobSplitterImpl::CopySequence(), GetEmblInst(), GetGenBankInst(), CWGSScaffoldIterator::GetSeq_inst(), CMolInfoField::SetVal(), CEditingActionMolInfoStrand::SetValue(), CModAdder::x_SetStrand(), and XMLGetInst().

SetStrand() [2/2]

CSeq_inst_Base::TStrand & CSeq_inst_Base::SetStrand ( void  )

inline

Assign a value to Strand data member.

Returns

Reference to the data value.

Definition at line 793 of file Seq_inst_.hpp.

References CSeq_inst_Base::IsSetStrand(), CSeq_inst_Base::m_set_State, CSeq_inst_Base::m_Strand, and CSerialObject::UnassignedByte().

SetTech() [1/2]

void CMolInfo_Base::SetTech ( CMolInfo_Base::TTech  value )

inline

Assign a value to Tech data member.

Parameters

value

Value to assign

Definition at line 503 of file MolInfo_.hpp.

References CMolInfo_Base::m_set_State, CMolInfo_Base::m_Tech, and rapidjson::value.

Referenced by CCleanup::AddMissingMolInfo(), CCleanup::AddProtein(), CMolInfoEditDlg::ApplyToMolInfo(), BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), fta_check_htg_kwds(), GetDescrEmblBlock(), GetGBBlock(), s_SetMolinfoTechFromString(), SetMolinfoFromGIBBMod(), CCleanup::SetMolinfoTech(), SetTech(), CMolInfoField::SetVal(), CEditingActionMolInfoTechnique::SetValue(), CPromote::x_PromoteCdregion(), CFeatTableEdit::xGenerate_mRNA_Product(), XMLGetEMBLBlock(), XMLGetGBBlock(), and CFeatureTableReader::xTranslateProtein().

SetTech() [2/2]

CMolInfo_Base::TTech & CMolInfo_Base::SetTech ( void  )

inline

Assign a value to Tech data member.

Returns

Reference to the data value.

Definition at line 510 of file MolInfo_.hpp.

References CMolInfo_Base::IsSetTech(), CMolInfo_Base::m_set_State, CMolInfo_Base::m_Tech, and CSerialObject::UnassignedByte().

SetTechexp() [1/3]

void CMolInfo_Base::SetTechexp ( const TTechexp &  value )

inline

Assign a value to Techexp data member.

Parameters

value

Value to assign

Definition at line 543 of file MolInfo_.hpp.

References CMolInfo_Base::m_set_State, CMolInfo_Base::m_Techexp, and rapidjson::value.

Referenced by fta_check_mga_keywords(), and CMolInfoField::SetVal().

SetTechexp() [2/3]

void CMolInfo_Base::SetTechexp ( CMolInfo_Base::TTechexp &&  value )

inline

Definition at line 550 of file MolInfo_.hpp.

References CMolInfo_Base::m_set_State, CMolInfo_Base::m_Techexp, and rapidjson::value.

SetTechexp() [3/3]

CMolInfo_Base::TTechexp & CMolInfo_Base::SetTechexp ( void  )

inline

Assign a value to Techexp data member.

Returns

Reference to the data value.

Definition at line 557 of file MolInfo_.hpp.

References CMolInfo_Base::IsSetTechexp(), CMolInfo_Base::m_set_State, CMolInfo_Base::m_Techexp, and CSerialObject::UnassignedString().

SetTitle() [1/4]

void CAnnotdesc_Base::SetTitle

(

const TTitle &

value

)

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 150 of file Annotdesc_.cpp.

References CAnnotdesc_Base::e_Title, eDoNotResetVariant, CAnnotdesc_Base::m_string, CAnnotdesc_Base::Select(), and rapidjson::value.

SetTitle() [2/4]

void CSeqdesc_Base::SetTitle

(

const TTitle &

value

)

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 234 of file Seqdesc_.cpp.

References CSeqdesc_Base::e_Title, eDoNotResetVariant, CSeqdesc_Base::m_string, CSeqdesc_Base::Select(), and rapidjson::value.

SetTitle() [3/4]

CAnnotdesc_Base::TTitle & CAnnotdesc_Base::SetTitle ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 528 of file Annotdesc_.hpp.

References CAnnotdesc_Base::e_Title, eDoNotResetVariant, CAnnotdesc_Base::m_string, and CAnnotdesc_Base::Select().

Referenced by CWig2tableApplication::MakeAnnot(), CDemoContigAssemblyApp::Run(), and CSeq_annot::SetTitleDesc().

SetTitle() [4/4]

CSeqdesc_Base::TTitle & CSeqdesc_Base::SetTitle ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 1039 of file Seqdesc_.hpp.

References CSeqdesc_Base::e_Title, eDoNotResetVariant, CSeqdesc_Base::m_string, and CSeqdesc_Base::Select().

Referenced by AddModToDefline(), AddModVectorToDefline(), AddOrgToDefline(), CCleanup::AddPartialToProteinTitle(), CCleanup::AddProteinTitle(), AddTitle(), BOOST_AUTO_TEST_CASE(), BuildGoodEcoSet(), CDefinitionLineField::ClearVal(), CVDBBlastUtil::CreateBioseqFromOid(), CVDBBlastUtil::CreateBioseqFromVDBSeqId(), CSequenceEditingEventHandler::CreateDescriptor(), CChangeSeqdescTitleCommand::Execute(), CSeqDBVol::GetBioseq(), GetBioseq(), GetEmblDescr(), GetGenBankDescr(), GetProtRefDescr(), CCSraRefSeqIterator::GetRefBioseq(), CWGSProteinIterator::GetSeq_descr(), CCSraShortReadIterator::GetShortBioseq(), CCSraAlignIterator::GetShortBioseq(), CSraRun::GetSpotEntry(), GetSprotDescr(), InstantiateProteinTitles(), CMakeCdrProds::MakeCdrProds(), PssmMaker::modifyQuery(), CBioseqEditor::OnCreateDescriptor(), CApplyMods::operator()(), PSSMWrapper::OutputPSSM(), CDUpdater::reformatBioseq(), CDUpdater::reformatBioseqByBlastDefline(), CAutoDefWithTaxonomy::RegeneratePopsetTitles(), CAutoDef::RegenerateSequenceDefLines(), CFindASN1Dlg::ReplaceInDesc(), CAgpconvertApplication::Run(), CMacroFunction_Autodef::s_AutodefBioseqs(), CMacroFunction_Autodef::s_AutodefSequence(), CMacroFunction_Autodef::s_AutodefSets(), CMacroFunction_RefreshDefline::s_RefreshDeflineCommand(), SeqLocToBioseq(), CSeqUtils::SeqLocToBioseq(), SetTitle(), CDefinitionLineField::SetVal(), CEditingActionDescDefline::SetValue(), SimplifyBioseqForCD(), SrchSegDescr(), CMacroFunction_AutodefComplete::TheFunction(), UpdateOneDefLine(), CAutogeneratedCleanup::x_BasicCleanupBioseq_descr_descr_E(), CAutogeneratedCleanup::x_BasicCleanupBioseqSetDesc(), CPsiBlastInputData::x_ExtractQueryForPssm(), CCddInputData::x_ExtractQueryForPssm(), CAutodefJob::x_MakeChanges(), CShortReadFastaInputSource::x_ReadFastaOneSeq(), CShortReadFastaInputSource::x_ReadFastc(), CShortReadFastaInputSource::x_ReadFastqOneSeq(), CFeatureTableReader::xAddProteinToSeqEntry(), and XMLGetDescr().

SetTopology() [1/2]

void CSeq_inst_Base::SetTopology ( CSeq_inst_Base::TTopology  value )

inline

Assign a value to Topology data member.

Parameters

value

Value to assign

Definition at line 739 of file Seq_inst_.hpp.

References CSeq_inst_Base::m_set_State, CSeq_inst_Base::m_Topology, and rapidjson::value.

Referenced by CMolInfoEditDlg::ApplyToInst(), CBlobSplitterImpl::CopySequence(), GetEmblInst(), GetGenBankInst(), CCSraRefSeqIterator::GetRefBioseq(), CWGSScaffoldIterator::GetSeq_inst(), CEditingBtnsPanel::rRNAtoDNA(), CMolInfoField::SetVal(), CEditingActionMolInfoTopology::SetValue(), CWGSSeqIterator::x_GetSeq_inst(), CModAdder::x_SetTopology(), and XMLGetInst().

SetTopology() [2/2]

CSeq_inst_Base::TTopology & CSeq_inst_Base::SetTopology ( void  )

inline

Assign a value to Topology data member.

Returns

Reference to the data value.

Definition at line 746 of file Seq_inst_.hpp.

References CSeq_inst_Base::IsSetTopology(), CSeq_inst_Base::m_set_State, CSeq_inst_Base::m_Topology, and CSerialObject::UnassignedByte().

SetType() [1/6]

void CLinkage_evidence_Base::SetType ( CLinkage_evidence_Base::TType  value )

inline

Assign a value to Type data member.

Parameters

value

Value to assign

Definition at line 200 of file Linkage_evidence_.hpp.

References CLinkage_evidence_Base::m_set_State, CLinkage_evidence_Base::m_Type, and rapidjson::value.

SetType() [2/6]

void CNum_ref_Base::SetType ( CNum_ref_Base::TType  value )

inline

Assign a value to Type data member.

Parameters

value

Value to assign

Definition at line 237 of file Num_ref_.hpp.

References CNum_ref_Base::m_set_State, CNum_ref_Base::m_Type, and rapidjson::value.

SetType() [3/6]

void CSeq_gap_Base::SetType ( CSeq_gap_Base::TType  value )

inline

Assign a value to Type data member.

Parameters

value

Value to assign

Definition at line 291 of file Seq_gap_.hpp.

References CSeq_gap_Base::m_set_State, CSeq_gap_Base::m_Type, and rapidjson::value.

Referenced by AdjustGap(), CFastaReader::AssembleSeq(), BOOST_AUTO_TEST_CASE(), CreateSeqGap(), sx_MakeGapLiteral(), and CAgpToSeqEntry::x_SetSeqGap().

SetType() [4/6]

CLinkage_evidence_Base::TType & CLinkage_evidence_Base::SetType ( void  )

inline

Assign a value to Type data member.

Returns

Reference to the data value.

Definition at line 207 of file Linkage_evidence_.hpp.

References CLinkage_evidence_Base::IsSetType(), CLinkage_evidence_Base::m_set_State, CLinkage_evidence_Base::m_Type, and CSerialObject::UnassignedByte().

SetType() [5/6]

CNum_ref_Base::TType & CNum_ref_Base::SetType ( void  )

inline

Assign a value to Type data member.

Returns

Reference to the data value.

Definition at line 244 of file Num_ref_.hpp.

References CNum_ref_Base::IsSetType(), CNum_ref_Base::m_set_State, CNum_ref_Base::m_Type, and CSerialObject::UnassignedByte().

SetType() [6/6]

CSeq_gap_Base::TType & CSeq_gap_Base::SetType ( void  )

inline

Assign a value to Type data member.

Returns

Reference to the data value.

Definition at line 298 of file Seq_gap_.hpp.

References CSeq_gap_Base::IsSetType(), CSeq_gap_Base::m_set_State, CSeq_gap_Base::m_Type, and CSerialObject::UnassignedByte().

Referenced by CSeq_gap::ChangeType(), CSeq_gap::SetLinkageTypeLinkedRepeat(), and CSeq_gap::SetLinkageTypeScaffold().

SetUnits() [1/3]

void CNum_real_Base::SetUnits ( const TUnits &  value )

inline

Assign a value to Units data member.

Parameters

value

Value to assign

Definition at line 357 of file Num_real_.hpp.

References CNum_real_Base::m_set_State, CNum_real_Base::m_Units, and rapidjson::value.

SetUnits() [2/3]

void CNum_real_Base::SetUnits ( CNum_real_Base::TUnits &&  value )

inline

Definition at line 364 of file Num_real_.hpp.

References CNum_real_Base::m_set_State, CNum_real_Base::m_Units, and rapidjson::value.

SetUnits() [3/3]

CNum_real_Base::TUnits & CNum_real_Base::SetUnits ( void  )

inline

Assign a value to Units data member.

Returns

Reference to the data value.

Definition at line 371 of file Num_real_.hpp.

References CNum_real_Base::IsSetUnits(), CNum_real_Base::m_set_State, CNum_real_Base::m_Units, and CSerialObject::UnassignedString().

SetUpdate_date() [1/4]

void CAnnotdesc_Base::SetUpdate_date

(

CAnnotdesc_Base::TUpdate_date &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 240 of file Annotdesc_.cpp.

References CObject::AddReference(), CAnnotdesc_Base::e_Update_date, CAnnotdesc_Base::m_choice, CAnnotdesc_Base::m_object, CAnnotdesc_Base::ResetSelection(), and rapidjson::value.

SetUpdate_date() [2/4]

void CSeqdesc_Base::SetUpdate_date

(

CSeqdesc_Base::TUpdate_date &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 506 of file Seqdesc_.cpp.

References CObject::AddReference(), CSeqdesc_Base::e_Update_date, CSeqdesc_Base::m_choice, CSeqdesc_Base::m_object, CSeqdesc_Base::ResetSelection(), and rapidjson::value.

SetUpdate_date() [3/4]

CAnnotdesc_Base::TUpdate_date & CAnnotdesc_Base::SetUpdate_date

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 234 of file Annotdesc_.cpp.

References CAnnotdesc_Base::e_Update_date, eDoNotResetVariant, CAnnotdesc_Base::m_object, and CAnnotdesc_Base::Select().

Referenced by CProjectItem::SetModifiedDate(), CSeq_annot::SetUpdateDate(), and CAutogeneratedCleanup::x_BasicCleanupBioseqSet_annot_E_E_desc_desc_E_ETC().

SetUpdate_date() [4/4]

CSeqdesc_Base::TUpdate_date & CSeqdesc_Base::SetUpdate_date

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 500 of file Seqdesc_.cpp.

References CSeqdesc_Base::e_Update_date, eDoNotResetVariant, CSeqdesc_Base::m_object, and CSeqdesc_Base::Select().

Referenced by CTable2AsnContext::ApplyUpdateDate(), BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), CSourceModParserWrapper::ExtractTitleAndApplyAllMods(), FixEmblUpdateDates(), GetEmblDescr(), GetGenBankDescr(), GetSprotDescr(), s_ActualizeUpdateDate(), CAutogeneratedCleanup::x_BasicCleanupBioseq_descr_descr_E(), CAutogeneratedCleanup::x_BasicCleanupBioseqSetDesc(), CGFFReader::x_ParseDateComment(), CAgpConverter::x_SetCreateAndUpdateDatesToToday(), and XMLGetDescr().

SetUser() [1/4]

void CAnnotdesc_Base::SetUser

(

CAnnotdesc_Base::TUser &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 196 of file Annotdesc_.cpp.

References CObject::AddReference(), CAnnotdesc_Base::e_User, CAnnotdesc_Base::m_choice, CAnnotdesc_Base::m_object, CAnnotdesc_Base::ResetSelection(), and rapidjson::value.

SetUser() [2/4]

void CSeqdesc_Base::SetUser

(

CSeqdesc_Base::TUser &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 396 of file Seqdesc_.cpp.

References CObject::AddReference(), CSeqdesc_Base::e_User, CSeqdesc_Base::m_choice, CSeqdesc_Base::m_object, CSeqdesc_Base::ResetSelection(), and rapidjson::value.

SetUser() [3/4]

CAnnotdesc_Base::TUser & CAnnotdesc_Base::SetUser

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 190 of file Annotdesc_.cpp.

References CAnnotdesc_Base::e_User, eDoNotResetVariant, CAnnotdesc_Base::m_object, and CAnnotdesc_Base::Select().

Referenced by CSeq_annot::AddUserObject(), BOOST_FIXTURE_TEST_CASE(), CBedAnnotAssembler::FinalizeAnnot(), CVDBGraphSeqIterator::GetAnnot(), CWig2tableApplication::MakeAnnot(), CCSraAlignIterator::MakeMatchAnnotIndicator(), CBam2Seq_graph::MakeSeq_annot(), CMicroArrayReader::ReadSeqAnnot(), CVcfReader::ReadSeqAnnot(), CDemoContigAssemblyApp::Run(), CProjectItemExtra::SetStr(), sx_GetMatchAnnotIndicator(), CTrackData::WriteToAnnot(), CReaderBase::xAddConversionInfo(), CBedReader::xAssignBedColumnCount(), CGvfReader::xParseStructuredComment(), CVcfReader::xProcessHeaderLine(), and CVcfReader::xProcessMetaLine().

SetUser() [4/4]

CSeqdesc_Base::TUser & CSeqdesc_Base::SetUser

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 390 of file Seqdesc_.cpp.

References CSeqdesc_Base::e_User, eDoNotResetVariant, CSeqdesc_Base::m_object, and CSeqdesc_Base::Select().

Referenced by CStructuredCommentsReader::_AddStructuredComment(), CSequenceEditingEventHandler::AddAssemblyStructuredComment(), CSequenceEditingEventHandler::AddGenomeAssemblyStructuredComment(), AddLocalIdUserObjects(), CWGSDb_Impl::AddMasterDescr(), AddRefGeneTrackingUserObject(), AddTpaAssemblyUserObject(), CSegregateSetsBase::AddUserObject(), CSourceModParser::ApplyAllMods(), CConvertComment::ApplyToComment(), CSetGlobalRefGeneStatus::ApplyToCSeq_entry(), CModifyStructuredComment::ApplyToCSeq_entry(), CCleanup::AutodefId(), CDiscrepancyVisitorImpl< _Name >::Autofix(), BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), CApplyObject::CApplyObject(), CDBLinkField::ClearVal(), CGenomeProjectField::ClearVal(), CStructuredCommentField::ClearVal(), CEditingBtnsPanel::CreateDescGenomeAssemblyComment(), CSequenceEditingEventHandler::CreateDescriptor(), CApplyIndexerComments::CreateNewComment(), CSequenceEditingEventHandler::CreateSpecificStructuredComment(), CEditObjectSeq_desc::CreateWindow(), CEditingActionDescUserObject::Find(), CEditingActionDescUserObject::FindRelated(), fta_build_ena_user_object(), fta_create_far_fetch_policy_user_object(), fta_get_dblink_user_object(), fta_get_mga_user_object(), fta_get_project_user_object(), fta_get_user_object(), CAutoAddDBLink::Get(), CStructuredCommentField::GetApplyObjects(), CStructCommFieldValuePair::GetApplyObjects(), CWithdrawSequences::GetCommand(), GetEmblDescr(), GetGenBankDescr(), CApplyStructCommentTreeItemData::GetMacroDescription(), CLoadStructComments::LoadSingle(), CMultiReader::LoadTemplate(), NMacroUtil::MakeNcbiAutofixUserObject(), CEditingActionDescUserObject::Modify(), CEditingActionDescStructCommFieldName::Modify(), CEditingActionDescLocalId::Modify(), CEditingActionDescComment::Modify(), CBioseqEditor::OnCreateDescriptor(), CValidatePanel::OnListItemRightClick(), CFastaReader::ParseDefLine(), CReorderStructuredComment::reorder_comment_by_rule(), CEditingActionDescGenomeProjectId::ResetValue(), CEditingActionDescStructCommDbName::ResetValue(), CMacroBioData_UserObjectIter::RunEditCommand(), CMacroFunction_Autodef::s_AddAutodefOptions(), s_AddNewUserField(), s_SetDBLinkFieldVals(), s_SetSeqdescUser(), CApplyStructCommentTreeItemData::SetData(), SetTargetedLocusName(), CTable2AsnContext::SetUserObject(), CDBLinkField::SetVal(), CStructuredCommentField::SetVal(), CGenomeProjectField::SetVal(), CEditingActionDescGenomeProjectId::SetValue(), CEditingActionDescUserObject::SetValue(), CEditingActionDescStructCommDbName::SetValue(), CEditingActionDescStructCommFieldName::SetValue(), CMacroFunction_AddDBLink::TheFunction(), CMacroFunction_ParseToStructComm::TheFunction(), CMacroFunction_SetStructCommDb::TheFunction(), CUnreviewedPanel::UpdateSeqdesc(), CSubmissionWizard::x_ApplyUserDescriptorToRecord(), CAutogeneratedCleanup::x_BasicCleanupBioseq_descr_descr_E(), CAutogeneratedCleanup::x_BasicCleanupBioseqSetDesc(), CSeqDBVol::x_GetAsnDefline(), CStructCommFieldValuePair::x_GetUser_Object(), CSubmissionWizard::x_InitializeDescriptorList(), CAutodefJob::x_MakeChanges(), CMacroFunction_SetStructCommDb::x_MakeNewStructuredComment(), CShortReadFastaInputSource::x_ReadFastc(), CASN1InputSourceOMF::x_ReadFromSingleFile(), CASN1InputSourceOMF::x_ReadFromTwoFiles(), CSraInputSource::x_ReadPairs(), CUpdateTLSNameDlg::x_UpdateAutodefOptions(), and XMLGetDescr().

SetVersion() [1/2]

void CTextannot_id_Base::SetVersion ( CTextannot_id_Base::TVersion  value )

inline

Assign a value to Version data member.

Parameters

value

Value to assign

Definition at line 456 of file Textannot_id_.hpp.

References CTextannot_id_Base::m_set_State, CTextannot_id_Base::m_Version, and rapidjson::value.

SetVersion() [2/2]

CTextannot_id_Base::TVersion & CTextannot_id_Base::SetVersion ( void  )

inline

Assign a value to Version data member.

Returns

Reference to the data value.

Definition at line 463 of file Textannot_id_.hpp.

References CTextannot_id_Base::IsSetVersion(), CTextannot_id_Base::m_set_State, CTextannot_id_Base::m_Version, and CSerialObject::UnassignedByte().

ThrowInvalidSelection() [1/9]

void CAnnot_id_Base::ThrowInvalidSelection

(

E_Choice

index

)

const

Throw 'InvalidSelection' exception.

Parameters

index

Expected selection.

Definition at line 107 of file Annot_id_.cpp.

References DIAG_COMPILE_INFO, CAnnot_id_Base::m_choice, and CAnnot_id_Base::sm_SelectionNames.

Referenced by CAnnot_id_Base::CheckSelected().

ThrowInvalidSelection() [2/9]

void CAnnotdesc_Base::ThrowInvalidSelection

(

E_Choice

index

)

const

Throw 'InvalidSelection' exception.

Parameters

index

Expected selection.

Definition at line 139 of file Annotdesc_.cpp.

References DIAG_COMPILE_INFO, CAnnotdesc_Base::m_choice, and CAnnotdesc_Base::sm_SelectionNames.

Referenced by CAnnotdesc_Base::CheckSelected().

ThrowInvalidSelection() [3/9]

void CDelta_seq_Base::ThrowInvalidSelection

(

E_Choice

index

)

const

Throw 'InvalidSelection' exception.

Parameters

index

Expected selection.

Definition at line 97 of file Delta_seq_.cpp.

References DIAG_COMPILE_INFO, CDelta_seq_Base::m_choice, and CDelta_seq_Base::sm_SelectionNames.

Referenced by CDelta_seq_Base::CheckSelected().

ThrowInvalidSelection() [4/9]

void CNumbering_Base::ThrowInvalidSelection

(

E_Choice

index

)

const

Throw 'InvalidSelection' exception.

Parameters

index

Expected selection.

Definition at line 109 of file Numbering_.cpp.

References DIAG_COMPILE_INFO, CNumbering_Base::m_choice, and CNumbering_Base::sm_SelectionNames.

Referenced by CNumbering_Base::CheckSelected().

ThrowInvalidSelection() [5/9]

void CSeq_annot_Base::C_Data::ThrowInvalidSelection

(

E_Choice

index

)

const

Throw 'InvalidSelection' exception.

Parameters

index

Expected selection.

Definition at line 148 of file Seq_annot_.cpp.

References DIAG_COMPILE_INFO.

ThrowInvalidSelection() [6/9]

void CSeq_data_Base::ThrowInvalidSelection

(

E_Choice

index

)

const

Throw 'InvalidSelection' exception.

Parameters

index

Expected selection.

Definition at line 161 of file Seq_data_.cpp.

References DIAG_COMPILE_INFO, CSeq_data_Base::m_choice, and CSeq_data_Base::sm_SelectionNames.

Referenced by CSeq_data_Base::CheckSelected().

ThrowInvalidSelection() [7/9]

void CSeq_ext_Base::ThrowInvalidSelection

(

E_Choice

index

)

const

Throw 'InvalidSelection' exception.

Parameters

index

Expected selection.

Definition at line 109 of file Seq_ext_.cpp.

References DIAG_COMPILE_INFO, CSeq_ext_Base::m_choice, and CSeq_ext_Base::sm_SelectionNames.

Referenced by CSeq_ext_Base::CheckSelected().

ThrowInvalidSelection() [8/9]

void CSeq_hist_Base::C_Deleted::ThrowInvalidSelection

(

E_Choice

index

)

const

Throw 'InvalidSelection' exception.

Parameters

index

Expected selection.

Definition at line 97 of file Seq_hist_.cpp.

References DIAG_COMPILE_INFO.

ThrowInvalidSelection() [9/9]

void CSeqdesc_Base::ThrowInvalidSelection

(

E_Choice

index

)

const

Throw 'InvalidSelection' exception.

Parameters

index

Expected selection.

Definition at line 223 of file Seqdesc_.cpp.

References DIAG_COMPILE_INFO, CSeqdesc_Base::m_choice, and CSeqdesc_Base::sm_SelectionNames.

Referenced by CSeqdesc_Base::CheckSelected().

Which() [1/9]

CAnnot_id_Base::E_Choice CAnnot_id_Base::Which ( void  ) const

inline

Which variant is currently selected.

Returns

Choice state enumerator.

Definition at line 289 of file Annot_id_.hpp.

References CAnnot_id_Base::m_choice.

Which() [2/9]

CAnnotdesc_Base::E_Choice CAnnotdesc_Base::Which ( void  ) const

inline

Which variant is currently selected.

Returns

Choice state enumerator.

Definition at line 466 of file Annotdesc_.hpp.

References CAnnotdesc_Base::m_choice.

Referenced by CSeq_annot_SplitInfo::GetName(), CAutogeneratedCleanup::x_BasicCleanupBioseqSet_annot_E_E_desc_desc_E_ETC(), CAdvancedAlignCleanup::x_CleanupProsplignCompartment(), CAlignmentSmear::x_GetAnnotName(), CProSplignJob::x_ProcessCompartment(), and CSeq_annot_Info::x_UpdateName().

Which() [3/9]

CDelta_seq_Base::E_Choice CDelta_seq_Base::Which ( void  ) const

inline

Which variant is currently selected.

Returns

Choice state enumerator.

Definition at line 228 of file Delta_seq_.hpp.

References CDelta_seq_Base::m_choice.

Referenced by CBlobSplitterImpl::AttachToSkeleton(), CBlobSplitterImpl::CopySequence(), CBlobSplitterImpl::GetLength(), CSeqMap::x_Add(), and CBioseq_Info::x_CalcBioseqLength().

Which() [4/9]

CNumbering_Base::E_Choice CNumbering_Base::Which ( void  ) const

inline

Which variant is currently selected.

Returns

Choice state enumerator.

Definition at line 287 of file Numbering_.hpp.

References CNumbering_Base::m_choice.

Referenced by CAutogeneratedCleanup::x_BasicCleanupNumbering().

Which() [5/9]

CSeq_annot_Base::C_Data::E_Choice CSeq_annot_Base::C_Data::Which ( void  ) const

inline

Which variant is currently selected.

Returns

Choice state enumerator.

Definition at line 586 of file Seq_annot_.hpp.

References CSeq_annot_Base::C_Data::m_choice.

Referenced by CRemoveSeqAnnot::ApplyToSeqAnot(), Convert_Seq_annot_Seq_id(), Convert_Seq_annot_Seq_loc_All(), Convert_Seq_annot_Seq_loc_TotalRange(), CBlobSplitterImpl::CopyAnnot(), CSeq_annot_SplitInfo::CountAnnotObjects(), AnnotObjTrait< CSeq_feat >::GetCont(), AnnotObjTrait< CSeq_align >::GetCont(), AnnotObjTrait< CSeq_graph >::GetCont(), CDesktopAnnotItem::GetDescription(), CGuiObjectInfoSeq_annot::GetIcon(), CSeq_annotHandler::GetLabel(), CGuiObjectInfoSeq_annot::GetSubtype(), CGuiObjectInfoSeq_annot::GetViewCategory(), CBlobSplitterImpl::MakeSeq_annot(), CSeq_loc_Mapper_Base::Map(), CGFFReader::Read(), CEditsSaver::Remove(), s_AttachAnnotToScope(), s_GetAnnotContent(), s_GetAnnotType(), s_GetSeqAnnotChoiceMask(), CSeq_annot_SplitInfo::SetSeq_annot(), CSeq_annot_Handle::Which(), CAutogeneratedCleanup::x_BasicCleanupSeqAnnotData(), CGFFReader::x_CreateGeneFeatures(), CSeq_annot_Info::x_InitAnnotList(), CSplitDataLoader::x_SplitAnnot(), and CWiggleReader::xPostProcessAnnot().

Which() [6/9]

CSeq_data_Base::E_Choice CSeq_data_Base::Which ( void  ) const

inline

Which variant is currently selected.

Returns

Choice state enumerator.

Definition at line 475 of file Seq_data_.hpp.

References CSeq_data_Base::m_choice.

Referenced by AddLiteral(), CSeqportUtil_implementation::Append(), variation::CVariationUtil::AttachSeq(), CDiscrepancyVisitorImpl< _Name >::Autofix(), CSeqportUtil_implementation::Complement(), CSeqportUtil_implementation::Convert(), CSeq_inst::ConvertDeltaToRaw(), ConvertRawToDeltaByNs(), CountNs(), CountNucleotides(), CSeqportUtil_implementation::FastValidate(), CSeqportUtil_implementation::GetAmbigs(), CSeqportUtil_implementation::GetCopy(), CValidError_bioseq::GetDataLen(), GetDeltaSeqSummary(), CBlobSplitterImpl::GetLength(), CSeqportUtil_implementation::Keep(), MakeSeqVectorForResidueCounting(), CSeqportUtil_implementation::Pack(), RawBioseqPack(), variation::CVariationUtil::Remap(), CSeqportUtil_implementation::Reverse(), CSeqportUtil_implementation::ReverseComplement(), s_GetQuerySequence(), CSeqportUtil_implementation::Validate(), CValidError_bioseq::ValidateRawConst(), CValidError_bioseq::ValidateRepr(), CSeqportUtil_implementation::x_ConvertAmbig(), CWriteDB_Impl::x_CookSequence(), and CForeignContaminationScreenReportReader::xTrimLiteral().

Which() [7/9]

CSeq_ext_Base::E_Choice CSeq_ext_Base::Which ( void  ) const

inline

Which variant is currently selected.

Returns

Choice state enumerator.

Definition at line 289 of file Seq_ext_.hpp.

References CSeq_ext_Base::m_choice.

Referenced by CBlobSplitterImpl::AttachToSkeleton(), CBlobSplitterImpl::CopySequence(), CBlobSplitterImpl::CopySkeleton(), CSeqMap::CSeqMap(), CAutogeneratedCleanup::x_BasicCleanupSeqExt(), and CBioseq_Info::x_CalcBioseqLength().

Which() [8/9]

CSeq_hist_Base::C_Deleted::E_Choice CSeq_hist_Base::C_Deleted::Which ( void  ) const

inline

Which variant is currently selected.

Returns

Choice state enumerator.

Definition at line 438 of file Seq_hist_.hpp.

References CSeq_hist_Base::C_Deleted::m_choice.

Referenced by CAutogeneratedCleanup::x_BasicCleanupSeqHistDeleted().

Which() [9/9]

CSeqdesc_Base::E_Choice CSeqdesc_Base::Which ( void  ) const

inline

Which variant is currently selected.

Returns

Choice state enumerator.

Definition at line 903 of file Seqdesc_.hpp.

References CSeqdesc_Base::m_choice.

Referenced by AddMasterDescr(), CWGSDb_Impl::AddMasterDescr(), BioseqSetDescriptorPropagateDown(), CDescriptorIndex::CDescriptorIndex(), descr_cmp(), CSubmissionWizard::ExtractDescriptor(), CBioseq::GetClosestDescriptor(), CValidErrorFormat::GetDescriptorContent(), CEditObjectSeq_desc::GetDescriptorType(), CEditObjectSeq_desc::GetEditCommand(), CSeqdesc::GetLabel(), CWGSDb::GetMasterDescrType(), CTextDescriptorField::GetRelatedObjects(), GetSeqdescPriority(), CDiscrepancyObject::GetTextObjectDescription(), GetTextObjectDescription(), CPubField::GetVals(), seqsubmit_split::NeedToInclude(), SLaterDate::operator()(), SIsDate::operator()(), CPrimeCacheApplication::Run(), s_DetermineComponentType(), s_GetContentLabel(), s_IsGoodDescr(), s_SeqDescCompare(), s_SeqDescLessThan(), CValidError_bioseqset::ValidateNucProtSet(), CValidError_desc::ValidateSeqDesc(), CValidError_bioseq::ValidateSeqDescContext(), CValidError_descr::ValidateSeqDescr(), CSubmissionWizard::x_ApplyOrReplaceDescriptorToRecord(), CAutogeneratedCleanup::x_BasicCleanupBioseq_descr_descr_E(), CAutogeneratedCleanup::x_BasicCleanupBioseqSetDesc(), CAutogeneratedExtendedCleanup::x_ExtendedCleanupSeqdesc(), CNewCleanup_imp::x_FixStructuredCommentKeywords(), CCommentItem::x_GatherDescInfo(), CDumpASNIndex::x_GetTaxId(), CBioseqIndex::x_InitDescs(), x_IsWgsSecondary(), CStartItem::x_SetDate(), and CPrimeCacheApplication::x_UpsertDescriptor().

~C_Data()

CSeq_annot_Base::C_Data::~C_Data

(

void

)

Definition at line 200 of file Seq_annot_.cpp.

References CSeq_annot_Base::Reset().

~C_Deleted()

CSeq_hist_Base::C_Deleted::~C_Deleted

(

void

)

Definition at line 145 of file Seq_hist_.cpp.

References CSeq_hist_Base::Reset().

~CAlign_def()

CAlign_def::~CAlign_def

(

void

)

Definition at line 50 of file Align_def.cpp.

~CAlign_def_Base()

CAlign_def_Base::~CAlign_def_Base ( void  )

virtual

Definition at line 93 of file Align_def_.cpp.

~CAnnot_descr()

CAnnot_descr::~CAnnot_descr

(

void

)

Definition at line 50 of file Annot_descr.cpp.

~CAnnot_descr_Base()

CAnnot_descr_Base::~CAnnot_descr_Base ( void  )

virtual

Definition at line 74 of file Annot_descr_.cpp.

~CAnnot_id()

CAnnot_id::~CAnnot_id

(

void

)

Definition at line 50 of file Annot_id.cpp.

~CAnnot_id_Base()

CAnnot_id_Base::~CAnnot_id_Base ( void  )

virtual

Definition at line 200 of file Annot_id_.cpp.

References CAnnot_id_Base::Reset().

~CAnnotdesc()

CAnnotdesc::~CAnnotdesc

(

void

)

Definition at line 50 of file Annotdesc.cpp.

~CAnnotdesc_Base()

CAnnotdesc_Base::~CAnnotdesc_Base ( void  )

virtual

Definition at line 344 of file Annotdesc_.cpp.

References CAnnotdesc_Base::Reset().

~CBioseq_Base()

CBioseq_Base::~CBioseq_Base ( void  )

virtual

Definition at line 128 of file Bioseq_.cpp.

~CDelta_ext_Base()

CDelta_ext_Base::~CDelta_ext_Base ( void  )

virtual

Definition at line 74 of file Delta_ext_.cpp.

~CDelta_seq()

CDelta_seq::~CDelta_seq

(

void

)

Definition at line 50 of file Delta_seq.cpp.

~CDelta_seq_Base()

CDelta_seq_Base::~CDelta_seq_Base ( void  )

virtual

Definition at line 166 of file Delta_seq_.cpp.

References CDelta_seq_Base::Reset().

~CLinkage_evidence_Base()

CLinkage_evidence_Base::~CLinkage_evidence_Base ( void  )

virtual

Definition at line 92 of file Linkage_evidence_.cpp.

~CMap_ext()

CMap_ext::~CMap_ext

(

void

)

Definition at line 50 of file Map_ext.cpp.

~CMap_ext_Base()

CMap_ext_Base::~CMap_ext_Base ( void  )

virtual

Definition at line 74 of file Map_ext_.cpp.

~CMolInfo_Base()

CMolInfo_Base::~CMolInfo_Base ( void  )

virtual

Definition at line 166 of file MolInfo_.cpp.

~CNum_cont()

CNum_cont::~CNum_cont

(

void

)

Definition at line 50 of file Num_cont.cpp.

~CNum_cont_Base()

CNum_cont_Base::~CNum_cont_Base ( void  )

virtual

Definition at line 77 of file Num_cont_.cpp.

~CNum_enum()

CNum_enum::~CNum_enum

(

void

)

Definition at line 50 of file Num_enum.cpp.

~CNum_enum_Base()

CNum_enum_Base::~CNum_enum_Base ( void  )

virtual

Definition at line 81 of file Num_enum_.cpp.

~CNum_real()

CNum_real::~CNum_real

(

void

)

Definition at line 50 of file Num_real.cpp.

~CNum_real_Base()

CNum_real_Base::~CNum_real_Base ( void  )

virtual

Definition at line 83 of file Num_real_.cpp.

~CNum_ref()

CNum_ref::~CNum_ref

(

void

)

Definition at line 50 of file Num_ref.cpp.

~CNum_ref_Base()

CNum_ref_Base::~CNum_ref_Base ( void  )

virtual

Definition at line 103 of file Num_ref_.cpp.

~CNumbering()

CNumbering::~CNumbering

(

void

)

Definition at line 50 of file Numbering.cpp.

~CNumbering_Base()

CNumbering_Base::~CNumbering_Base ( void  )

virtual

Definition at line 224 of file Numbering_.cpp.

References CNumbering_Base::Reset().

~CPubdesc_Base()

CPubdesc_Base::~CPubdesc_Base ( void  )

virtual

Definition at line 170 of file Pubdesc_.cpp.

~CSeg_ext()

CSeg_ext::~CSeg_ext

(

void

)

Definition at line 50 of file Seg_ext.cpp.

~CSeg_ext_Base()

CSeg_ext_Base::~CSeg_ext_Base ( void  )

virtual

Definition at line 74 of file Seg_ext_.cpp.

~CSeq_annot_Base()

CSeq_annot_Base::~CSeq_annot_Base ( void  )

virtual

Definition at line 283 of file Seq_annot_.cpp.

~CSeq_data_Base()

CSeq_data_Base::~CSeq_data_Base ( void  )

virtual

Definition at line 235 of file Seq_data_.cpp.

References CSeq_data_Base::Reset().

~CSeq_descr_Base()

CSeq_descr_Base::~CSeq_descr_Base ( void  )

virtual

Definition at line 74 of file Seq_descr_.cpp.

~CSeq_ext()

CSeq_ext::~CSeq_ext

(

void

)

Definition at line 50 of file Seq_ext.cpp.

~CSeq_ext_Base()

CSeq_ext_Base::~CSeq_ext_Base ( void  )

virtual

Definition at line 224 of file Seq_ext_.cpp.

References CSeq_ext_Base::Reset().

~CSeq_gap_Base()

CSeq_gap_Base::~CSeq_gap_Base ( void  )

virtual

Definition at line 113 of file Seq_gap_.cpp.

~CSeq_hist()

CSeq_hist::~CSeq_hist

(

void

)

Definition at line 50 of file Seq_hist.cpp.

~CSeq_hist_Base()

CSeq_hist_Base::~CSeq_hist_Base ( void  )

virtual

Definition at line 236 of file Seq_hist_.cpp.

~CSeq_hist_rec()

CSeq_hist_rec::~CSeq_hist_rec

(

void

)

Definition at line 50 of file Seq_hist_rec.cpp.

~CSeq_hist_rec_Base()

CSeq_hist_rec_Base::~CSeq_hist_rec_Base ( void  )

virtual

Definition at line 99 of file Seq_hist_rec_.cpp.

~CSeq_inst_Base()

CSeq_inst_Base::~CSeq_inst_Base ( void  )

virtual

Definition at line 215 of file Seq_inst_.cpp.

~CSeq_literal_Base()

CSeq_literal_Base::~CSeq_literal_Base ( void  )

virtual

Definition at line 113 of file Seq_literal_.cpp.

~CSeqdesc_Base()

CSeqdesc_Base::~CSeqdesc_Base ( void  )

virtual

Definition at line 675 of file Seqdesc_.cpp.

References CSeqdesc_Base::Reset().

~CTextannot_id()

CTextannot_id::~CTextannot_id

(

void

)

Definition at line 50 of file Textannot_id.cpp.

~CTextannot_id_Base()

CTextannot_id_Base::~CTextannot_id_Base ( void  )

virtual

Definition at line 97 of file Textannot_id_.cpp.

Variable Documentation

union { ... }

union { ... }

union { ... }

union { ... }

union { ... }

union { ... }

m_A

double CNum_real_Base::m_A

private

Definition at line 227 of file Num_real_.hpp.

Referenced by CNum_real_Base::GetA(), CNum_real_Base::ResetA(), and CNum_real_Base::SetA().

m_Accession

string CTextannot_id_Base::m_Accession

private

Definition at line 272 of file Textannot_id_.hpp.

Referenced by CTextannot_id_Base::GetAccession(), CTextannot_id_Base::ResetAccession(), and CTextannot_id_Base::SetAccession().

m_Align [1/2]

NCBI_NS_NCBI::CUnionBuffer<TAlign> CSeq_annot_Base::C_Data::m_Align

Definition at line 348 of file Seq_annot_.hpp.

[2/2]

NCBI_NS_NCBI::CUnionBuffer<TAlign> { ... } ::m_Align

Definition at line 348 of file Seq_annot_.hpp.

m_Align_group

int CPubdesc_Base::m_Align_group

private

Definition at line 578 of file Pubdesc_.hpp.

Referenced by CPubdesc_Base::GetAlign_group(), CPubdesc_Base::ResetAlign_group(), and CPubdesc_Base::SetAlign_group().

m_Align_type

int CAlign_def_Base::m_Align_type

private

Definition at line 194 of file Align_def_.hpp.

Referenced by CAlign_def_Base::GetAlign_type(), CAlign_def_Base::ResetAlign_type(), and CAlign_def_Base::SetAlign_type().

m_Aligns

CRef< TAligns > CNum_ref_Base::m_Aligns

private

Definition at line 196 of file Num_ref_.hpp.

Referenced by CNum_ref_Base::GetAligns(), CNum_ref_Base::IsSetAligns(), CNum_ref_Base::ResetAligns(), and CNum_ref_Base::SetAligns().

m_Annot

list< CRef< CSeq_annot > > CBioseq_Base::m_Annot

private

Definition at line 265 of file Bioseq_.hpp.

Referenced by CBioseq_Base::GetAnnot(), CBioseq_Base::ResetAnnot(), and CBioseq_Base::SetAnnot().

m_Ascending

bool CNum_cont_Base::m_Ascending

private

Definition at line 234 of file Num_cont_.hpp.

Referenced by CNum_cont_Base::GetAscending(), CNum_cont_Base::ResetAscending(), and CNum_cont_Base::SetAscending().

m_Assembly

list< CRef< CSeq_align > > CSeq_hist_Base::m_Assembly

private

Definition at line 422 of file Seq_hist_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CSeq_hist_Base::GetAssembly(), CSeq_hist_Base::ResetAssembly(), and CSeq_hist_Base::SetAssembly().

m_B

double CNum_real_Base::m_B

private

Definition at line 228 of file Num_real_.hpp.

Referenced by CNum_real_Base::GetB(), CNum_real_Base::ResetB(), and CNum_real_Base::SetB().

m_Biomol

int CMolInfo_Base::m_Biomol

private

Definition at line 405 of file MolInfo_.hpp.

Referenced by CMolInfo_Base::GetBiomol(), CMolInfo_Base::ResetBiomol(), and CMolInfo_Base::SetBiomol().

[1/2]

TBool { ... } ::m_Bool

Definition at line 243 of file Seq_hist_.hpp.

m_Bool [2/2]

TBool CSeq_hist_Base::C_Deleted::m_Bool

Definition at line 243 of file Seq_hist_.hpp.

m_choice [1/9]

E_Choice CAnnot_id_Base::m_choice

private

Definition at line 267 of file Annot_id_.hpp.

Referenced by CAnnot_id_Base::CheckSelected(), CAnnot_id_Base::DoSelect(), CAnnot_id_Base::IsGeneral(), CAnnot_id_Base::IsLocal(), CAnnot_id_Base::IsNcbi(), CAnnot_id_Base::IsOther(), CAnnot_id_Base::Reset(), CAnnot_id_Base::ResetSelection(), CAnnot_id_Base::SetGeneral(), CAnnot_id_Base::SetLocal(), CAnnot_id_Base::SetOther(), CAnnot_id_Base::ThrowInvalidSelection(), and CAnnot_id_Base::Which().

m_choice [2/9]

E_Choice CAnnotdesc_Base::m_choice

private

Definition at line 444 of file Annotdesc_.hpp.

Referenced by CAnnotdesc_Base::CheckSelected(), CAnnotdesc_Base::DoSelect(), CAnnotdesc_Base::IsAlign(), CAnnotdesc_Base::IsComment(), CAnnotdesc_Base::IsCreate_date(), CAnnotdesc_Base::IsName(), CAnnotdesc_Base::IsPub(), CAnnotdesc_Base::IsRegion(), CAnnotdesc_Base::IsSrc(), CAnnotdesc_Base::IsTitle(), CAnnotdesc_Base::IsUpdate_date(), CAnnotdesc_Base::IsUser(), CAnnotdesc_Base::Reset(), CAnnotdesc_Base::ResetSelection(), CAnnotdesc_Base::SetAlign(), CAnnotdesc_Base::SetCreate_date(), CAnnotdesc_Base::SetPub(), CAnnotdesc_Base::SetRegion(), CAnnotdesc_Base::SetSrc(), CAnnotdesc_Base::SetUpdate_date(), CAnnotdesc_Base::SetUser(), CAnnotdesc_Base::ThrowInvalidSelection(), and CAnnotdesc_Base::Which().

m_choice [3/9]

E_Choice CDelta_seq_Base::m_choice

private

Definition at line 209 of file Delta_seq_.hpp.

Referenced by CDelta_seq_Base::CheckSelected(), CDelta_seq_Base::DoSelect(), CDelta_seq_Base::IsLiteral(), CDelta_seq_Base::IsLoc(), CDelta_seq_Base::Reset(), CDelta_seq_Base::ResetSelection(), CDelta_seq_Base::SetLiteral(), CDelta_seq_Base::SetLoc(), CDelta_seq_Base::ThrowInvalidSelection(), and CDelta_seq_Base::Which().

m_choice [4/9]

E_Choice CNumbering_Base::m_choice

private

Definition at line 268 of file Numbering_.hpp.

Referenced by CNumbering_Base::CheckSelected(), CNumbering_Base::DoSelect(), CNumbering_Base::IsCont(), CNumbering_Base::IsEnum(), CNumbering_Base::IsReal(), CNumbering_Base::IsRef(), CNumbering_Base::Reset(), CNumbering_Base::ResetSelection(), CNumbering_Base::SetCont(), CNumbering_Base::SetEnum(), CNumbering_Base::SetReal(), CNumbering_Base::SetRef(), CNumbering_Base::ThrowInvalidSelection(), and CNumbering_Base::Which().

m_choice [5/9]

E_Choice CSeq_annot_Base::C_Data::m_choice

private

Definition at line 340 of file Seq_annot_.hpp.

Referenced by CSeq_annot_Base::C_Data::Reset(), and CSeq_annot_Base::C_Data::Which().

m_choice [6/9]

E_Choice CSeq_data_Base::m_choice

private

Definition at line 444 of file Seq_data_.hpp.

Referenced by CSeq_data_Base::CheckSelected(), CSeq_data_Base::DoSelect(), CSeq_data_Base::IsGap(), CSeq_data_Base::IsIupacaa(), CSeq_data_Base::IsIupacna(), CSeq_data_Base::IsNcbi2na(), CSeq_data_Base::IsNcbi4na(), CSeq_data_Base::IsNcbi8aa(), CSeq_data_Base::IsNcbi8na(), CSeq_data_Base::IsNcbieaa(), CSeq_data_Base::IsNcbipaa(), CSeq_data_Base::IsNcbipna(), CSeq_data_Base::IsNcbistdaa(), CSeq_data_Base::Reset(), CSeq_data_Base::ResetSelection(), CSeq_data_Base::SetGap(), CSeq_data_Base::ThrowInvalidSelection(), and CSeq_data_Base::Which().

m_choice [7/9]

E_Choice CSeq_ext_Base::m_choice

private

Definition at line 270 of file Seq_ext_.hpp.

Referenced by CSeq_ext_Base::CheckSelected(), CSeq_ext_Base::DoSelect(), CSeq_ext_Base::IsDelta(), CSeq_ext_Base::IsMap(), CSeq_ext_Base::IsRef(), CSeq_ext_Base::IsSeg(), CSeq_ext_Base::Reset(), CSeq_ext_Base::ResetSelection(), CSeq_ext_Base::SetDelta(), CSeq_ext_Base::SetMap(), CSeq_ext_Base::SetRef(), CSeq_ext_Base::SetSeg(), CSeq_ext_Base::ThrowInvalidSelection(), and CSeq_ext_Base::Which().

m_choice [8/9]

E_Choice CSeq_hist_Base::C_Deleted::m_choice

private

Definition at line 236 of file Seq_hist_.hpp.

Referenced by CSeq_hist_Base::C_Deleted::Reset(), and CSeq_hist_Base::C_Deleted::Which().

m_choice [9/9]

E_Choice CSeqdesc_Base::m_choice

private

Definition at line 877 of file Seqdesc_.hpp.

Referenced by CSeqdesc_Base::CheckSelected(), CSeqdesc_Base::DoSelect(), CSeqdesc_Base::IsComment(), CSeqdesc_Base::IsCreate_date(), CSeqdesc_Base::IsDbxref(), CSeqdesc_Base::IsEmbl(), CSeqdesc_Base::IsGenbank(), CSeqdesc_Base::IsHet(), CSeqdesc_Base::IsMaploc(), CSeqdesc_Base::IsMethod(), CSeqdesc_Base::IsModelev(), CSeqdesc_Base::IsModif(), CSeqdesc_Base::IsMol_type(), CSeqdesc_Base::IsMolinfo(), CSeqdesc_Base::IsName(), CSeqdesc_Base::IsNum(), CSeqdesc_Base::IsOrg(), CSeqdesc_Base::IsPdb(), CSeqdesc_Base::IsPir(), CSeqdesc_Base::IsPrf(), CSeqdesc_Base::IsPub(), CSeqdesc_Base::IsRegion(), CSeqdesc_Base::IsSource(), CSeqdesc_Base::IsSp(), CSeqdesc_Base::IsTitle(), CSeqdesc_Base::IsUpdate_date(), CSeqdesc_Base::IsUser(), CSeqdesc_Base::Reset(), CSeqdesc_Base::ResetSelection(), CSeqdesc_Base::SetCreate_date(), CSeqdesc_Base::SetDbxref(), CSeqdesc_Base::SetEmbl(), CSeqdesc_Base::SetGenbank(), CSeqdesc_Base::SetMaploc(), CSeqdesc_Base::SetModelev(), CSeqdesc_Base::SetMolinfo(), CSeqdesc_Base::SetNum(), CSeqdesc_Base::SetOrg(), CSeqdesc_Base::SetPdb(), CSeqdesc_Base::SetPir(), CSeqdesc_Base::SetPrf(), CSeqdesc_Base::SetPub(), CSeqdesc_Base::SetSource(), CSeqdesc_Base::SetSp(), CSeqdesc_Base::SetUpdate_date(), CSeqdesc_Base::SetUser(), CSeqdesc_Base::ThrowInvalidSelection(), and CSeqdesc_Base::Which().

m_Comment

string CPubdesc_Base::m_Comment

private

Definition at line 579 of file Pubdesc_.hpp.

Referenced by CPubdesc_Base::GetComment(), CPubdesc_Base::ResetComment(), and CPubdesc_Base::SetComment().

m_Completeness

int CMolInfo_Base::m_Completeness

private

Definition at line 408 of file MolInfo_.hpp.

Referenced by CMolInfo_Base::GetCompleteness(), CMolInfo_Base::ResetCompleteness(), and CMolInfo_Base::SetCompleteness().

m_data [1/5]

list< CRef< CAnnotdesc > > CAnnot_descr_Base::m_data

private

Definition at line 139 of file Annot_descr_.hpp.

Referenced by CAnnot_descr_Base::Get(), CAnnot_descr_Base::Reset(), and CAnnot_descr_Base::Set().

m_data [2/5]

list< CRef< CDelta_seq > > CDelta_ext_Base::m_data

private

Definition at line 139 of file Delta_ext_.hpp.

Referenced by CDelta_ext_Base::Get(), CDelta_ext_Base::Reset(), and CDelta_ext_Base::Set().

m_data [3/5]

list< CRef< CSeq_feat > > CMap_ext_Base::m_data

private

Definition at line 139 of file Map_ext_.hpp.

Referenced by CMap_ext_Base::Get(), CMap_ext_Base::Reset(), and CMap_ext_Base::Set().

m_data [4/5]

list< CRef< CSeq_loc > > CSeg_ext_Base::m_data

private

Definition at line 139 of file Seg_ext_.hpp.

Referenced by CSeg_ext_Base::Get(), CSeg_ext_Base::Reset(), and CSeg_ext_Base::Set().

m_Data

CRef< TData > CSeq_annot_Base::m_Data

private

Definition at line 573 of file Seq_annot_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CSeq_annot_Base::GetData(), CSeq_annot_Base::IsSetData(), CSeq_annot_Base::ResetData(), and CSeq_annot_Base::SetData().

m_data [5/5]

list< CRef< CSeqdesc > > CSeq_descr_Base::m_data

private

Definition at line 141 of file Seq_descr_.hpp.

Referenced by CSeq_descr_Base::Get(), CSeq_descr_Base::Reset(), and CSeq_descr_Base::Set().

m_Date

CRef< TDate > CSeq_hist_rec_Base::m_Date

private

Definition at line 183 of file Seq_hist_rec_.hpp.

Referenced by CSeq_hist_rec_Base::GetDate(), CSeq_hist_rec_Base::IsSetDate(), CSeq_hist_rec_Base::ResetDate(), and CSeq_hist_rec_Base::SetDate().

m_Db

int CSeq_annot_Base::m_Db

private

Definition at line 570 of file Seq_annot_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CSeq_annot_Base::GetDb(), CSeq_annot_Base::ResetDb(), and CSeq_annot_Base::SetDb().

m_Deleted

CRef< TDeleted > CSeq_hist_Base::m_Deleted

private

Definition at line 425 of file Seq_hist_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CSeq_hist_Base::GetDeleted(), CSeq_hist_Base::IsSetDeleted(), CSeq_hist_Base::ResetDeleted(), and CSeq_hist_Base::SetDeleted().

m_Desc

CRef< TDesc > CSeq_annot_Base::m_Desc

private

Definition at line 572 of file Seq_annot_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CSeq_annot_Base::GetDesc(), CSeq_annot_Base::IsSetDesc(), CSeq_annot_Base::ResetDesc(), and CSeq_annot_Base::SetDesc().

m_Descr

CRef< TDescr > CBioseq_Base::m_Descr

private

Definition at line 263 of file Bioseq_.hpp.

Referenced by CBioseq_Base::GetDescr(), CBioseq_Base::IsSetDescr(), CBioseq_Base::ResetDescr(), and CBioseq_Base::SetDescr().

m_Ext

CRef< TExt > CSeq_inst_Base::m_Ext

private

Definition at line 532 of file Seq_inst_.hpp.

Referenced by CSeq_inst_Base::GetExt(), CSeq_inst_Base::IsSetExt(), CSeq_inst_Base::ResetExt(), and CSeq_inst_Base::SetExt().

m_Fig

string CPubdesc_Base::m_Fig

private

Definition at line 572 of file Pubdesc_.hpp.

Referenced by CPubdesc_Base::GetFig(), CPubdesc_Base::ResetFig(), and CPubdesc_Base::SetFig().

m_Ftable [1/2]

NCBI_NS_NCBI::CUnionBuffer<TFtable> CSeq_annot_Base::C_Data::m_Ftable

Definition at line 347 of file Seq_annot_.hpp.

[2/2]

NCBI_NS_NCBI::CUnionBuffer<TFtable> { ... } ::m_Ftable

Definition at line 347 of file Seq_annot_.hpp.

m_Fuzz [1/2]

CRef< TFuzz > CSeq_inst_Base::m_Fuzz

private

Definition at line 528 of file Seq_inst_.hpp.

Referenced by CSeq_inst_Base::GetFuzz(), CSeq_inst_Base::IsSetFuzz(), CSeq_inst_Base::ResetFuzz(), and CSeq_inst_Base::SetFuzz().

m_Fuzz [2/2]

CRef< TFuzz > CSeq_literal_Base::m_Fuzz

private

Definition at line 228 of file Seq_literal_.hpp.

Referenced by CSeq_literal_Base::GetFuzz(), CSeq_literal_Base::IsSetFuzz(), CSeq_literal_Base::ResetFuzz(), and CSeq_literal_Base::SetFuzz().

m_Gbmoltype

string CMolInfo_Base::m_Gbmoltype

private

Definition at line 409 of file MolInfo_.hpp.

Referenced by CMolInfo_Base::GetGbmoltype(), CMolInfo_Base::ResetGbmoltype(), and CMolInfo_Base::SetGbmoltype().

m_Graph [1/2]

NCBI_NS_NCBI::CUnionBuffer<TGraph> CSeq_annot_Base::C_Data::m_Graph

Definition at line 349 of file Seq_annot_.hpp.

[2/2]

NCBI_NS_NCBI::CUnionBuffer<TGraph> { ... } ::m_Graph

Definition at line 349 of file Seq_annot_.hpp.

m_Has_zero

bool CNum_cont_Base::m_Has_zero

private

Definition at line 233 of file Num_cont_.hpp.

Referenced by CNum_cont_Base::GetHas_zero(), CNum_cont_Base::ResetHas_zero(), and CNum_cont_Base::SetHas_zero().

m_Het [1/2]

NCBI_NS_NCBI::CUnionBuffer<THet> CSeqdesc_Base::m_Het

Definition at line 887 of file Seqdesc_.hpp.

Referenced by CSeqdesc_Base::DoSelect(), CSeqdesc_Base::GetHet(), CSeqdesc_Base::ResetSelection(), and CSeqdesc_Base::SetHet().

[2/2]

NCBI_NS_NCBI::CUnionBuffer<THet> { ... } ::m_Het

Definition at line 887 of file Seqdesc_.hpp.

m_Hist

CRef< THist > CSeq_inst_Base::m_Hist

private

Definition at line 533 of file Seq_inst_.hpp.

Referenced by CSeq_inst_Base::GetHist(), CSeq_inst_Base::IsSetHist(), CSeq_inst_Base::ResetHist(), and CSeq_inst_Base::SetHist().

m_Id [1/2]

list< CRef< CSeq_id > > CBioseq_Base::m_Id

private

Definition at line 262 of file Bioseq_.hpp.

Referenced by CBioseq_Base::GetId(), CBioseq_Base::ResetId(), and CBioseq_Base::SetId().

m_Id [2/2]

list< CRef< CAnnot_id > > CSeq_annot_Base::m_Id

private

Definition at line 569 of file Seq_annot_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CSeq_annot_Base::GetId(), CSeq_annot_Base::ResetId(), and CSeq_annot_Base::SetId().

m_Ids [1/4]

list< CRef< CSeq_id > > CAlign_def_Base::m_Ids

private

Definition at line 195 of file Align_def_.hpp.

Referenced by CAlign_def_Base::GetIds(), CAlign_def_Base::ResetIds(), and CAlign_def_Base::SetIds().

m_Ids [2/4]

NCBI_NS_NCBI::CUnionBuffer<TIds> CSeq_annot_Base::C_Data::m_Ids

Definition at line 350 of file Seq_annot_.hpp.

[3/4]

NCBI_NS_NCBI::CUnionBuffer<TIds> { ... } ::m_Ids

Definition at line 350 of file Seq_annot_.hpp.

m_Ids [4/4]

list< CRef< CSeq_id > > CSeq_hist_rec_Base::m_Ids

private

Definition at line 184 of file Seq_hist_rec_.hpp.

Referenced by CSeq_hist_rec_Base::GetIds(), CSeq_hist_rec_Base::ResetIds(), and CSeq_hist_rec_Base::SetIds().

m_Inst

CRef< TInst > CBioseq_Base::m_Inst

private

Definition at line 264 of file Bioseq_.hpp.

Referenced by CBioseq_Base::GetInst(), CBioseq_Base::IsSetInst(), CBioseq_Base::ResetInst(), and CBioseq_Base::SetInst().

m_Iupacaa [1/2]

NCBI_NS_NCBI::CUnionBuffer<TIupacaa> CSeq_data_Base::m_Iupacaa

Definition at line 452 of file Seq_data_.hpp.

Referenced by CSeq_data_Base::DoSelect(), CSeq_data_Base::GetIupacaa(), CSeq_data_Base::ResetSelection(), and CSeq_data_Base::SetIupacaa().

[2/2]

NCBI_NS_NCBI::CUnionBuffer<TIupacaa> { ... } ::m_Iupacaa

Definition at line 452 of file Seq_data_.hpp.

m_Iupacna [1/2]

NCBI_NS_NCBI::CUnionBuffer<TIupacna> CSeq_data_Base::m_Iupacna

Definition at line 451 of file Seq_data_.hpp.

Referenced by CSeq_data_Base::DoSelect(), CSeq_data_Base::GetIupacna(), CSeq_data_Base::ResetSelection(), and CSeq_data_Base::SetIupacna().

[2/2]

NCBI_NS_NCBI::CUnionBuffer<TIupacna> { ... } ::m_Iupacna

Definition at line 451 of file Seq_data_.hpp.

m_Length [1/2]

TSeqPos CSeq_inst_Base::m_Length

private

Definition at line 527 of file Seq_inst_.hpp.

Referenced by CSeq_inst_Base::GetLength(), CSeq_inst_Base::ResetLength(), and CSeq_inst_Base::SetLength().

m_Length [2/2]

TSeqPos CSeq_literal_Base::m_Length

private

Definition at line 227 of file Seq_literal_.hpp.

Referenced by CSeq_literal_Base::GetLength(), CSeq_literal_Base::ResetLength(), and CSeq_literal_Base::SetLength().

m_Linkage

int CSeq_gap_Base::m_Linkage

private

Definition at line 249 of file Seq_gap_.hpp.

Referenced by CSeq_gap_Base::GetLinkage(), CSeq_gap_Base::ResetLinkage(), and CSeq_gap_Base::SetLinkage().

m_Linkage_evidence

list< CRef< CLinkage_evidence > > CSeq_gap_Base::m_Linkage_evidence

private

Definition at line 250 of file Seq_gap_.hpp.

Referenced by CSeq_gap_Base::GetLinkage_evidence(), CSeq_gap_Base::ResetLinkage_evidence(), and CSeq_gap_Base::SetLinkage_evidence().

m_Locs [1/2]

NCBI_NS_NCBI::CUnionBuffer<TLocs> CSeq_annot_Base::C_Data::m_Locs

Definition at line 351 of file Seq_annot_.hpp.

[2/2]

NCBI_NS_NCBI::CUnionBuffer<TLocs> { ... } ::m_Locs

Definition at line 351 of file Seq_annot_.hpp.

m_Maploc

string CPubdesc_Base::m_Maploc

private

Definition at line 576 of file Pubdesc_.hpp.

Referenced by CPubdesc_Base::GetMaploc(), CPubdesc_Base::ResetMaploc(), and CPubdesc_Base::SetMaploc().

m_Method [1/2]

TMethod CSeqdesc_Base::m_Method

Definition at line 886 of file Seqdesc_.hpp.

Referenced by CSeqdesc_Base::DoSelect(), CSeqdesc_Base::GetMethod(), and CSeqdesc_Base::SetMethod().

[2/2]

TMethod { ... } ::m_Method

Definition at line 886 of file Seqdesc_.hpp.

[1/2]

NCBI_NS_NCBI::CUnionBuffer<TModif> { ... } ::m_Modif

Definition at line 885 of file Seqdesc_.hpp.

m_Modif [2/2]

NCBI_NS_NCBI::CUnionBuffer<TModif> CSeqdesc_Base::m_Modif

Definition at line 885 of file Seqdesc_.hpp.

Referenced by CSeqdesc_Base::DoSelect(), CSeqdesc_Base::GetModif(), CSeqdesc_Base::ResetSelection(), and CSeqdesc_Base::SetModif().

m_Mol

EMol CSeq_inst_Base::m_Mol

private

Definition at line 526 of file Seq_inst_.hpp.

Referenced by CSeq_inst_Base::GetMol(), CSeq_inst_Base::ResetMol(), and CSeq_inst_Base::SetMol().

m_Mol_type [1/2]

TMol_type CSeqdesc_Base::m_Mol_type

Definition at line 884 of file Seqdesc_.hpp.

Referenced by CSeqdesc_Base::DoSelect(), CSeqdesc_Base::GetMol_type(), and CSeqdesc_Base::SetMol_type().

[2/2]

TMol_type { ... } ::m_Mol_type

Definition at line 884 of file Seqdesc_.hpp.

m_Name [1/3]

string CPubdesc_Base::m_Name

private

Definition at line 571 of file Pubdesc_.hpp.

Referenced by CPubdesc_Base::GetName(), CPubdesc_Base::ResetName(), and CPubdesc_Base::SetName().

m_Name [2/3]

string CSeq_annot_Base::m_Name

private

Definition at line 571 of file Seq_annot_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CSeq_annot_Base::GetName(), CSeq_annot_Base::ResetName(), and CSeq_annot_Base::SetName().

m_Name [3/3]

string CTextannot_id_Base::m_Name

private

Definition at line 271 of file Textannot_id_.hpp.

Referenced by CTextannot_id_Base::GetName(), CTextannot_id_Base::ResetName(), and CTextannot_id_Base::SetName().

m_Names

list< string > CNum_enum_Base::m_Names

private

Definition at line 183 of file Num_enum_.hpp.

Referenced by CNum_enum_Base::GetNames(), CNum_enum_Base::ResetNames(), and CNum_enum_Base::SetNames().

m_Ncbi [1/2]

ncbi::TIntId CAnnot_id_Base::m_Ncbi

Definition at line 274 of file Annot_id_.hpp.

Referenced by CAnnot_id_Base::DoSelect(), CAnnot_id_Base::GetNcbi(), and CAnnot_id_Base::SetNcbi().

[2/2]

ncbi::TIntId { ... } ::m_Ncbi

Definition at line 274 of file Annot_id_.hpp.

m_Ncbi2na [1/2]

NCBI_NS_NCBI::CUnionBuffer<TNcbi2na> CSeq_data_Base::m_Ncbi2na

Definition at line 453 of file Seq_data_.hpp.

Referenced by CSeq_data_Base::DoSelect(), CSeq_data_Base::GetNcbi2na(), CSeq_data_Base::ResetSelection(), and CSeq_data_Base::SetNcbi2na().

[2/2]

NCBI_NS_NCBI::CUnionBuffer<TNcbi2na> { ... } ::m_Ncbi2na

Definition at line 453 of file Seq_data_.hpp.

m_Ncbi4na [1/2]

NCBI_NS_NCBI::CUnionBuffer<TNcbi4na> CSeq_data_Base::m_Ncbi4na

Definition at line 454 of file Seq_data_.hpp.

Referenced by CSeq_data_Base::DoSelect(), CSeq_data_Base::GetNcbi4na(), CSeq_data_Base::ResetSelection(), and CSeq_data_Base::SetNcbi4na().

[2/2]

NCBI_NS_NCBI::CUnionBuffer<TNcbi4na> { ... } ::m_Ncbi4na

Definition at line 454 of file Seq_data_.hpp.

m_Ncbi8aa [1/2]

NCBI_NS_NCBI::CUnionBuffer<TNcbi8aa> CSeq_data_Base::m_Ncbi8aa

Definition at line 457 of file Seq_data_.hpp.

Referenced by CSeq_data_Base::DoSelect(), CSeq_data_Base::GetNcbi8aa(), CSeq_data_Base::ResetSelection(), and CSeq_data_Base::SetNcbi8aa().

[2/2]

NCBI_NS_NCBI::CUnionBuffer<TNcbi8aa> { ... } ::m_Ncbi8aa

Definition at line 457 of file Seq_data_.hpp.

[1/2]

NCBI_NS_NCBI::CUnionBuffer<TNcbi8na> { ... } ::m_Ncbi8na

Definition at line 455 of file Seq_data_.hpp.

m_Ncbi8na [2/2]

NCBI_NS_NCBI::CUnionBuffer<TNcbi8na> CSeq_data_Base::m_Ncbi8na

Definition at line 455 of file Seq_data_.hpp.

Referenced by CSeq_data_Base::DoSelect(), CSeq_data_Base::GetNcbi8na(), CSeq_data_Base::ResetSelection(), and CSeq_data_Base::SetNcbi8na().

m_Ncbieaa [1/2]

NCBI_NS_NCBI::CUnionBuffer<TNcbieaa> CSeq_data_Base::m_Ncbieaa

Definition at line 458 of file Seq_data_.hpp.

Referenced by CSeq_data_Base::DoSelect(), CSeq_data_Base::GetNcbieaa(), CSeq_data_Base::ResetSelection(), and CSeq_data_Base::SetNcbieaa().

[2/2]

NCBI_NS_NCBI::CUnionBuffer<TNcbieaa> { ... } ::m_Ncbieaa

Definition at line 458 of file Seq_data_.hpp.

[1/2]

NCBI_NS_NCBI::CUnionBuffer<TNcbipaa> { ... } ::m_Ncbipaa

Definition at line 459 of file Seq_data_.hpp.

m_Ncbipaa [2/2]

NCBI_NS_NCBI::CUnionBuffer<TNcbipaa> CSeq_data_Base::m_Ncbipaa

Definition at line 459 of file Seq_data_.hpp.

Referenced by CSeq_data_Base::DoSelect(), CSeq_data_Base::GetNcbipaa(), CSeq_data_Base::ResetSelection(), and CSeq_data_Base::SetNcbipaa().

[1/2]

NCBI_NS_NCBI::CUnionBuffer<TNcbipna> { ... } ::m_Ncbipna

Definition at line 456 of file Seq_data_.hpp.

m_Ncbipna [2/2]

NCBI_NS_NCBI::CUnionBuffer<TNcbipna> CSeq_data_Base::m_Ncbipna

Definition at line 456 of file Seq_data_.hpp.

Referenced by CSeq_data_Base::DoSelect(), CSeq_data_Base::GetNcbipna(), CSeq_data_Base::ResetSelection(), and CSeq_data_Base::SetNcbipna().

[1/2]

NCBI_NS_NCBI::CUnionBuffer<TNcbistdaa> { ... } ::m_Ncbistdaa

Definition at line 460 of file Seq_data_.hpp.

m_Ncbistdaa [2/2]

NCBI_NS_NCBI::CUnionBuffer<TNcbistdaa> CSeq_data_Base::m_Ncbistdaa

Definition at line 460 of file Seq_data_.hpp.

Referenced by CSeq_data_Base::DoSelect(), CSeq_data_Base::GetNcbistdaa(), CSeq_data_Base::ResetSelection(), and CSeq_data_Base::SetNcbistdaa().

m_Num [1/2]

TSeqPos CNum_enum_Base::m_Num

private

Definition at line 182 of file Num_enum_.hpp.

Referenced by CNum_enum_Base::GetNum(), CNum_enum_Base::ResetNum(), and CNum_enum_Base::SetNum().

m_Num [2/2]

CRef< TNum > CPubdesc_Base::m_Num

private

Definition at line 573 of file Pubdesc_.hpp.

Referenced by CPubdesc_Base::GetNum(), CPubdesc_Base::IsSetNum(), CPubdesc_Base::ResetNum(), and CPubdesc_Base::SetNum().

m_Numexc

bool CPubdesc_Base::m_Numexc

private

Definition at line 574 of file Pubdesc_.hpp.

Referenced by CPubdesc_Base::GetNumexc(), CPubdesc_Base::ResetNumexc(), and CPubdesc_Base::SetNumexc().

m_object [1/15]

NCBI_NS_NCBI::CSerialObject* CAnnot_id_Base::m_object

Definition at line 275 of file Annot_id_.hpp.

Referenced by CAnnot_id_Base::DoSelect(), CAnnot_id_Base::GetGeneral(), CAnnot_id_Base::GetLocal(), CAnnot_id_Base::GetOther(), CAnnot_id_Base::ResetSelection(), CAnnot_id_Base::SetGeneral(), CAnnot_id_Base::SetLocal(), and CAnnot_id_Base::SetOther().

[2/15]

NCBI_NS_NCBI::CSerialObject* { ... } ::m_object

Definition at line 275 of file Annot_id_.hpp.

m_object [3/15]

NCBI_NS_NCBI::CSerialObject* CAnnotdesc_Base::m_object

Definition at line 452 of file Annotdesc_.hpp.

Referenced by CAnnotdesc_Base::DoSelect(), CAnnotdesc_Base::GetAlign(), CAnnotdesc_Base::GetCreate_date(), CAnnotdesc_Base::GetPub(), CAnnotdesc_Base::GetRegion(), CAnnotdesc_Base::GetSrc(), CAnnotdesc_Base::GetUpdate_date(), CAnnotdesc_Base::GetUser(), CAnnotdesc_Base::ResetSelection(), CAnnotdesc_Base::SetAlign(), CAnnotdesc_Base::SetCreate_date(), CAnnotdesc_Base::SetPub(), CAnnotdesc_Base::SetRegion(), CAnnotdesc_Base::SetSrc(), CAnnotdesc_Base::SetUpdate_date(), and CAnnotdesc_Base::SetUser().

[4/15]

NCBI_NS_NCBI::CSerialObject* { ... } ::m_object

Definition at line 452 of file Annotdesc_.hpp.

m_object [5/15]

NCBI_NS_NCBI::CSerialObject* CDelta_seq_Base::m_object

private

Definition at line 215 of file Delta_seq_.hpp.

Referenced by CDelta_seq_Base::DoSelect(), CDelta_seq_Base::GetLiteral(), CDelta_seq_Base::GetLoc(), CDelta_seq_Base::ResetSelection(), CDelta_seq_Base::SetLiteral(), and CDelta_seq_Base::SetLoc().

m_object [6/15]

NCBI_NS_NCBI::CSerialObject* CNumbering_Base::m_object

private

Definition at line 274 of file Numbering_.hpp.

Referenced by CNumbering_Base::DoSelect(), CNumbering_Base::GetCont(), CNumbering_Base::GetEnum(), CNumbering_Base::GetReal(), CNumbering_Base::GetRef(), CNumbering_Base::ResetSelection(), CNumbering_Base::SetCont(), CNumbering_Base::SetEnum(), CNumbering_Base::SetReal(), and CNumbering_Base::SetRef().

m_object [7/15]

NCBI_NS_NCBI::CSerialObject* CSeq_annot_Base::C_Data::m_object

Definition at line 352 of file Seq_annot_.hpp.

[8/15]

NCBI_NS_NCBI::CSerialObject* { ... } ::m_object

Definition at line 352 of file Seq_annot_.hpp.

[9/15]

NCBI_NS_NCBI::CSerialObject* { ... } ::m_object

Definition at line 461 of file Seq_data_.hpp.

m_object [10/15]

NCBI_NS_NCBI::CSerialObject* CSeq_data_Base::m_object

Definition at line 461 of file Seq_data_.hpp.

Referenced by CSeq_data_Base::DoSelect(), CSeq_data_Base::GetGap(), CSeq_data_Base::ResetSelection(), and CSeq_data_Base::SetGap().

m_object [11/15]

NCBI_NS_NCBI::CSerialObject* CSeq_ext_Base::m_object

private

Definition at line 276 of file Seq_ext_.hpp.

Referenced by CSeq_ext_Base::DoSelect(), CSeq_ext_Base::GetDelta(), CSeq_ext_Base::GetMap(), CSeq_ext_Base::GetRef(), CSeq_ext_Base::GetSeg(), CSeq_ext_Base::ResetSelection(), CSeq_ext_Base::SetDelta(), CSeq_ext_Base::SetMap(), CSeq_ext_Base::SetRef(), and CSeq_ext_Base::SetSeg().

m_object [12/15]

NCBI_NS_NCBI::CSerialObject* CSeq_hist_Base::C_Deleted::m_object

Definition at line 244 of file Seq_hist_.hpp.

[13/15]

NCBI_NS_NCBI::CSerialObject* { ... } ::m_object

Definition at line 244 of file Seq_hist_.hpp.

m_object [14/15]

NCBI_NS_NCBI::CSerialObject* CSeqdesc_Base::m_object

Definition at line 889 of file Seqdesc_.hpp.

Referenced by CSeqdesc_Base::DoSelect(), CSeqdesc_Base::GetCreate_date(), CSeqdesc_Base::GetDbxref(), CSeqdesc_Base::GetEmbl(), CSeqdesc_Base::GetGenbank(), CSeqdesc_Base::GetMaploc(), CSeqdesc_Base::GetModelev(), CSeqdesc_Base::GetMolinfo(), CSeqdesc_Base::GetNum(), CSeqdesc_Base::GetOrg(), CSeqdesc_Base::GetPdb(), CSeqdesc_Base::GetPir(), CSeqdesc_Base::GetPrf(), CSeqdesc_Base::GetPub(), CSeqdesc_Base::GetSource(), CSeqdesc_Base::GetSp(), CSeqdesc_Base::GetUpdate_date(), CSeqdesc_Base::GetUser(), CSeqdesc_Base::ResetSelection(), CSeqdesc_Base::SetCreate_date(), CSeqdesc_Base::SetDbxref(), CSeqdesc_Base::SetEmbl(), CSeqdesc_Base::SetGenbank(), CSeqdesc_Base::SetMaploc(), CSeqdesc_Base::SetModelev(), CSeqdesc_Base::SetMolinfo(), CSeqdesc_Base::SetNum(), CSeqdesc_Base::SetOrg(), CSeqdesc_Base::SetPdb(), CSeqdesc_Base::SetPir(), CSeqdesc_Base::SetPrf(), CSeqdesc_Base::SetPub(), CSeqdesc_Base::SetSource(), CSeqdesc_Base::SetSp(), CSeqdesc_Base::SetUpdate_date(), and CSeqdesc_Base::SetUser().

[15/15]

NCBI_NS_NCBI::CSerialObject* { ... } ::m_object

Definition at line 889 of file Seqdesc_.hpp.

m_Poly_a

bool CPubdesc_Base::m_Poly_a

private

Definition at line 575 of file Pubdesc_.hpp.

Referenced by CPubdesc_Base::GetPoly_a(), CPubdesc_Base::ResetPoly_a(), and CPubdesc_Base::SetPoly_a().

m_Pub

CRef< TPub > CPubdesc_Base::m_Pub

private

Definition at line 570 of file Pubdesc_.hpp.

Referenced by CPubdesc_Base::GetPub(), CPubdesc_Base::IsSetPub(), CPubdesc_Base::ResetPub(), and CPubdesc_Base::SetPub().

m_Refnum

TSignedSeqPos CNum_cont_Base::m_Refnum

private

Definition at line 232 of file Num_cont_.hpp.

Referenced by CNum_cont_Base::GetRefnum(), CNum_cont_Base::ResetRefnum(), and CNum_cont_Base::SetRefnum().

m_Reftype

int CPubdesc_Base::m_Reftype

private

Definition at line 580 of file Pubdesc_.hpp.

Referenced by CPubdesc_Base::GetReftype(), CPubdesc_Base::ResetReftype(), and CPubdesc_Base::SetReftype().

m_Release

string CTextannot_id_Base::m_Release

private

Definition at line 273 of file Textannot_id_.hpp.

Referenced by CTextannot_id_Base::GetRelease(), CTextannot_id_Base::ResetRelease(), and CTextannot_id_Base::SetRelease().

m_Replaced_by

CRef< TReplaced_by > CSeq_hist_Base::m_Replaced_by

private

Definition at line 424 of file Seq_hist_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CSeq_hist_Base::GetReplaced_by(), CSeq_hist_Base::IsSetReplaced_by(), CSeq_hist_Base::ResetReplaced_by(), and CSeq_hist_Base::SetReplaced_by().

m_Replaces

CRef< TReplaces > CSeq_hist_Base::m_Replaces

private

Definition at line 423 of file Seq_hist_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CSeq_hist_Base::GetReplaces(), CSeq_hist_Base::IsSetReplaces(), CSeq_hist_Base::ResetReplaces(), and CSeq_hist_Base::SetReplaces().

m_Repr

ERepr CSeq_inst_Base::m_Repr

private

Definition at line 525 of file Seq_inst_.hpp.

Referenced by CSeq_inst_Base::GetRepr(), CSeq_inst_Base::ResetRepr(), and CSeq_inst_Base::SetRepr().

m_Seq_data [1/2]

CRef< TSeq_data > CSeq_inst_Base::m_Seq_data

private

Definition at line 531 of file Seq_inst_.hpp.

Referenced by CSeq_inst_Base::GetSeq_data(), CSeq_inst_Base::IsSetSeq_data(), CSeq_inst_Base::ResetSeq_data(), and CSeq_inst_Base::SetSeq_data().

m_Seq_data [2/2]

CRef< TSeq_data > CSeq_literal_Base::m_Seq_data

private

Definition at line 229 of file Seq_literal_.hpp.

Referenced by CSeq_literal_Base::GetSeq_data(), CSeq_literal_Base::IsSetSeq_data(), CSeq_literal_Base::ResetSeq_data(), and CSeq_literal_Base::SetSeq_data().

m_Seq_raw

string CPubdesc_Base::m_Seq_raw

private

Definition at line 577 of file Pubdesc_.hpp.

Referenced by CPubdesc_Base::GetSeq_raw(), CPubdesc_Base::ResetSeq_raw(), and CPubdesc_Base::SetSeq_raw().

m_set_State [1/21]

Uint4 CAlign_def_Base::m_set_State[1]

private

Definition at line 193 of file Align_def_.hpp.

Referenced by CAlign_def_Base::CAlign_def_Base(), CAlign_def_Base::IsSetAlign_type(), CAlign_def_Base::IsSetIds(), CAlign_def_Base::ResetAlign_type(), CAlign_def_Base::ResetIds(), CAlign_def_Base::SetAlign_type(), and CAlign_def_Base::SetIds().

m_set_State [2/21]

Uint4 CAnnot_descr_Base::m_set_State[1]

private

Definition at line 138 of file Annot_descr_.hpp.

Referenced by CAnnot_descr_Base::CAnnot_descr_Base(), CAnnot_descr_Base::IsSet(), CAnnot_descr_Base::Reset(), and CAnnot_descr_Base::Set().

m_set_State [3/21]

Uint4 CBioseq_Base::m_set_State[1]

private

Definition at line 261 of file Bioseq_.hpp.

Referenced by CBioseq_Base::CBioseq_Base(), CBioseq_Base::IsSetAnnot(), CBioseq_Base::IsSetId(), CBioseq_Base::ResetAnnot(), CBioseq_Base::ResetId(), CBioseq_Base::SetAnnot(), and CBioseq_Base::SetId().

m_set_State [4/21]

Uint4 CDelta_ext_Base::m_set_State[1]

private

Definition at line 138 of file Delta_ext_.hpp.

Referenced by CDelta_ext_Base::CDelta_ext_Base(), CDelta_ext_Base::IsSet(), CDelta_ext_Base::Reset(), and CDelta_ext_Base::Set().

m_set_State [5/21]

Uint4 CLinkage_evidence_Base::m_set_State[1]

private

Definition at line 158 of file Linkage_evidence_.hpp.

Referenced by CLinkage_evidence_Base::CLinkage_evidence_Base(), CLinkage_evidence_Base::IsSetType(), CLinkage_evidence_Base::ResetType(), and CLinkage_evidence_Base::SetType().

m_set_State [6/21]

Uint4 CMap_ext_Base::m_set_State[1]

private

Definition at line 138 of file Map_ext_.hpp.

Referenced by CMap_ext_Base::CMap_ext_Base(), CMap_ext_Base::IsSet(), CMap_ext_Base::Reset(), and CMap_ext_Base::Set().

m_set_State [7/21]

Uint4 CMolInfo_Base::m_set_State[1]

private

Definition at line 404 of file MolInfo_.hpp.

Referenced by CMolInfo_Base::CMolInfo_Base(), CMolInfo_Base::IsSetBiomol(), CMolInfo_Base::IsSetCompleteness(), CMolInfo_Base::IsSetGbmoltype(), CMolInfo_Base::IsSetTech(), CMolInfo_Base::IsSetTechexp(), CMolInfo_Base::ResetBiomol(), CMolInfo_Base::ResetCompleteness(), CMolInfo_Base::ResetGbmoltype(), CMolInfo_Base::ResetTech(), CMolInfo_Base::ResetTechexp(), CMolInfo_Base::SetBiomol(), CMolInfo_Base::SetCompleteness(), CMolInfo_Base::SetGbmoltype(), CMolInfo_Base::SetTech(), and CMolInfo_Base::SetTechexp().

m_set_State [8/21]

Uint4 CNum_cont_Base::m_set_State[1]

private

Definition at line 231 of file Num_cont_.hpp.

Referenced by CNum_cont_Base::CNum_cont_Base(), CNum_cont_Base::IsSetAscending(), CNum_cont_Base::IsSetHas_zero(), CNum_cont_Base::IsSetRefnum(), CNum_cont_Base::ResetAscending(), CNum_cont_Base::ResetHas_zero(), CNum_cont_Base::ResetRefnum(), CNum_cont_Base::SetAscending(), CNum_cont_Base::SetHas_zero(), and CNum_cont_Base::SetRefnum().

m_set_State [9/21]

Uint4 CNum_enum_Base::m_set_State[1]

private

Definition at line 181 of file Num_enum_.hpp.

Referenced by CNum_enum_Base::CNum_enum_Base(), CNum_enum_Base::IsSetNames(), CNum_enum_Base::IsSetNum(), CNum_enum_Base::ResetNames(), CNum_enum_Base::ResetNum(), CNum_enum_Base::SetNames(), and CNum_enum_Base::SetNum().

m_set_State [10/21]

Uint4 CNum_real_Base::m_set_State[1]

private

Definition at line 226 of file Num_real_.hpp.

Referenced by CNum_real_Base::CNum_real_Base(), CNum_real_Base::IsSetA(), CNum_real_Base::IsSetB(), CNum_real_Base::IsSetUnits(), CNum_real_Base::ResetA(), CNum_real_Base::ResetB(), CNum_real_Base::ResetUnits(), CNum_real_Base::SetA(), CNum_real_Base::SetB(), and CNum_real_Base::SetUnits().

m_set_State [11/21]

Uint4 CNum_ref_Base::m_set_State[1]

private

Definition at line 194 of file Num_ref_.hpp.

Referenced by CNum_ref_Base::CNum_ref_Base(), CNum_ref_Base::IsSetType(), CNum_ref_Base::ResetType(), and CNum_ref_Base::SetType().

m_set_State [12/21]

Uint4 CPubdesc_Base::m_set_State[1]

private

Definition at line 569 of file Pubdesc_.hpp.

Referenced by CPubdesc_Base::CPubdesc_Base(), CPubdesc_Base::IsSetAlign_group(), CPubdesc_Base::IsSetComment(), CPubdesc_Base::IsSetFig(), CPubdesc_Base::IsSetMaploc(), CPubdesc_Base::IsSetName(), CPubdesc_Base::IsSetNumexc(), CPubdesc_Base::IsSetPoly_a(), CPubdesc_Base::IsSetReftype(), CPubdesc_Base::IsSetSeq_raw(), CPubdesc_Base::ResetAlign_group(), CPubdesc_Base::ResetComment(), CPubdesc_Base::ResetFig(), CPubdesc_Base::ResetMaploc(), CPubdesc_Base::ResetName(), CPubdesc_Base::ResetNumexc(), CPubdesc_Base::ResetPoly_a(), CPubdesc_Base::ResetReftype(), CPubdesc_Base::ResetSeq_raw(), CPubdesc_Base::SetAlign_group(), CPubdesc_Base::SetComment(), CPubdesc_Base::SetFig(), CPubdesc_Base::SetMaploc(), CPubdesc_Base::SetName(), CPubdesc_Base::SetNumexc(), CPubdesc_Base::SetPoly_a(), CPubdesc_Base::SetReftype(), and CPubdesc_Base::SetSeq_raw().

m_set_State [13/21]

Uint4 CSeg_ext_Base::m_set_State[1]

private

Definition at line 138 of file Seg_ext_.hpp.

Referenced by CSeg_ext_Base::CSeg_ext_Base(), CSeg_ext_Base::IsSet(), CSeg_ext_Base::Reset(), and CSeg_ext_Base::Set().

m_set_State [14/21]

Uint4 CSeq_annot_Base::m_set_State[1]

private

Definition at line 568 of file Seq_annot_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CSeq_annot_Base::CSeq_annot_Base(), CSeq_annot_Base::IsSetDb(), CSeq_annot_Base::IsSetId(), CSeq_annot_Base::IsSetName(), CSeq_annot_Base::ResetDb(), CSeq_annot_Base::ResetId(), CSeq_annot_Base::ResetName(), CSeq_annot_Base::SetDb(), CSeq_annot_Base::SetId(), and CSeq_annot_Base::SetName().

m_set_State [15/21]

Uint4 CSeq_descr_Base::m_set_State[1]

private

Definition at line 140 of file Seq_descr_.hpp.

Referenced by CSeq_descr_Base::CSeq_descr_Base(), CSeq_descr_Base::IsSet(), CSeq_descr_Base::Reset(), and CSeq_descr_Base::Set().

m_set_State [16/21]

Uint4 CSeq_gap_Base::m_set_State[1]

private

Definition at line 247 of file Seq_gap_.hpp.

Referenced by CSeq_gap_Base::CSeq_gap_Base(), CSeq_gap_Base::IsSetLinkage(), CSeq_gap_Base::IsSetLinkage_evidence(), CSeq_gap_Base::IsSetType(), CSeq_gap_Base::ResetLinkage(), CSeq_gap_Base::ResetLinkage_evidence(), CSeq_gap_Base::ResetType(), CSeq_gap_Base::SetLinkage(), CSeq_gap_Base::SetLinkage_evidence(), and CSeq_gap_Base::SetType().

m_set_State [17/21]

Uint4 CSeq_hist_Base::m_set_State[1]

private

Definition at line 421 of file Seq_hist_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CSeq_hist_Base::CSeq_hist_Base(), CSeq_hist_Base::IsSetAssembly(), CSeq_hist_Base::ResetAssembly(), and CSeq_hist_Base::SetAssembly().

m_set_State [18/21]

Uint4 CSeq_hist_rec_Base::m_set_State[1]

private

Definition at line 182 of file Seq_hist_rec_.hpp.

Referenced by CSeq_hist_rec_Base::CSeq_hist_rec_Base(), CSeq_hist_rec_Base::IsSetIds(), CSeq_hist_rec_Base::ResetIds(), and CSeq_hist_rec_Base::SetIds().

m_set_State [19/21]

Uint4 CSeq_inst_Base::m_set_State[1]

private

Definition at line 524 of file Seq_inst_.hpp.

Referenced by CSeq_inst_Base::CSeq_inst_Base(), CSeq_inst_Base::IsSetLength(), CSeq_inst_Base::IsSetMol(), CSeq_inst_Base::IsSetRepr(), CSeq_inst_Base::IsSetStrand(), CSeq_inst_Base::IsSetTopology(), CSeq_inst_Base::ResetLength(), CSeq_inst_Base::ResetMol(), CSeq_inst_Base::ResetRepr(), CSeq_inst_Base::ResetStrand(), CSeq_inst_Base::ResetTopology(), CSeq_inst_Base::SetLength(), CSeq_inst_Base::SetMol(), CSeq_inst_Base::SetRepr(), CSeq_inst_Base::SetStrand(), and CSeq_inst_Base::SetTopology().

m_set_State [20/21]

Uint4 CSeq_literal_Base::m_set_State[1]

private

Definition at line 226 of file Seq_literal_.hpp.

Referenced by CSeq_literal_Base::CSeq_literal_Base(), CSeq_literal_Base::IsSetLength(), CSeq_literal_Base::ResetLength(), and CSeq_literal_Base::SetLength().

m_set_State [21/21]

Uint4 CTextannot_id_Base::m_set_State[1]

private

Definition at line 270 of file Textannot_id_.hpp.

Referenced by CTextannot_id_Base::CTextannot_id_Base(), CTextannot_id_Base::IsSetAccession(), CTextannot_id_Base::IsSetName(), CTextannot_id_Base::IsSetRelease(), CTextannot_id_Base::IsSetVersion(), CTextannot_id_Base::ResetAccession(), CTextannot_id_Base::ResetName(), CTextannot_id_Base::ResetRelease(), CTextannot_id_Base::ResetVersion(), CTextannot_id_Base::SetAccession(), CTextannot_id_Base::SetName(), CTextannot_id_Base::SetRelease(), and CTextannot_id_Base::SetVersion().

m_Strand

EStrand CSeq_inst_Base::m_Strand

private

Definition at line 530 of file Seq_inst_.hpp.

Referenced by CSeq_inst_Base::GetStrand(), CSeq_inst_Base::ResetStrand(), and CSeq_inst_Base::SetStrand().

m_string [1/4]

NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string> CAnnotdesc_Base::m_string

Definition at line 451 of file Annotdesc_.hpp.

Referenced by CAnnotdesc_Base::DoSelect(), CAnnotdesc_Base::GetComment(), CAnnotdesc_Base::GetName(), CAnnotdesc_Base::GetTitle(), CAnnotdesc_Base::ResetSelection(), CAnnotdesc_Base::SetComment(), CAnnotdesc_Base::SetName(), and CAnnotdesc_Base::SetTitle().

[2/4]

NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string> { ... } ::m_string

Definition at line 451 of file Annotdesc_.hpp.

[3/4]

NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string> { ... } ::m_string

Definition at line 888 of file Seqdesc_.hpp.

m_string [4/4]

NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string> CSeqdesc_Base::m_string

Definition at line 888 of file Seqdesc_.hpp.

Referenced by CSeqdesc_Base::DoSelect(), CSeqdesc_Base::GetComment(), CSeqdesc_Base::GetName(), CSeqdesc_Base::GetRegion(), CSeqdesc_Base::GetTitle(), CSeqdesc_Base::ResetSelection(), CSeqdesc_Base::SetComment(), CSeqdesc_Base::SetName(), CSeqdesc_Base::SetRegion(), and CSeqdesc_Base::SetTitle().

m_Tech

int CMolInfo_Base::m_Tech

private

Definition at line 406 of file MolInfo_.hpp.

Referenced by CMolInfo_Base::GetTech(), CMolInfo_Base::ResetTech(), and CMolInfo_Base::SetTech().

m_Techexp

string CMolInfo_Base::m_Techexp

private

Definition at line 407 of file MolInfo_.hpp.

Referenced by CMolInfo_Base::GetTechexp(), CMolInfo_Base::ResetTechexp(), and CMolInfo_Base::SetTechexp().

m_Topology

ETopology CSeq_inst_Base::m_Topology

private

Definition at line 529 of file Seq_inst_.hpp.

Referenced by CSeq_inst_Base::GetTopology(), CSeq_inst_Base::ResetTopology(), and CSeq_inst_Base::SetTopology().

m_Type [1/3]

int CLinkage_evidence_Base::m_Type

private

Definition at line 159 of file Linkage_evidence_.hpp.

Referenced by CLinkage_evidence_Base::GetType(), CLinkage_evidence_Base::ResetType(), and CLinkage_evidence_Base::SetType().

m_Type [2/3]

EType CNum_ref_Base::m_Type

private

Definition at line 195 of file Num_ref_.hpp.

Referenced by CNum_ref_Base::GetType(), CNum_ref_Base::ResetType(), and CNum_ref_Base::SetType().

m_Type [3/3]

int CSeq_gap_Base::m_Type

private

Definition at line 248 of file Seq_gap_.hpp.

Referenced by CSeq_gap_Base::GetType(), CSeq_gap_Base::ResetType(), and CSeq_gap_Base::SetType().

m_Units

string CNum_real_Base::m_Units

private

Definition at line 229 of file Num_real_.hpp.

Referenced by CNum_real_Base::GetUnits(), CNum_real_Base::ResetUnits(), and CNum_real_Base::SetUnits().

m_Version

int CTextannot_id_Base::m_Version

private

Definition at line 274 of file Textannot_id_.hpp.

Referenced by CTextannot_id_Base::GetVersion(), CTextannot_id_Base::ResetVersion(), and CTextannot_id_Base::SetVersion().

sm_SelectionNames [1/9]

const char *const CAnnot_id_Base::sm_SelectionNames

staticprivate

Initial value:

= {
    "not set",
    "local",
    "ncbi",
    "general",
    "other"
}

Definition at line 271 of file Annot_id_.hpp.

Referenced by CAnnot_id_Base::SelectionName(), and CAnnot_id_Base::ThrowInvalidSelection().

sm_SelectionNames [2/9]

const char *const CAnnotdesc_Base::sm_SelectionNames

staticprivate

Initial value:

= {
    "not set",
    "name",
    "title",
    "comment",
    "pub",
    "user",
    "create-date",
    "update-date",
    "src",
    "align",
    "region"
}

Definition at line 448 of file Annotdesc_.hpp.

Referenced by CAnnotdesc_Base::SelectionName(), and CAnnotdesc_Base::ThrowInvalidSelection().

sm_SelectionNames [3/9]

const char *const CDelta_seq_Base::sm_SelectionNames

staticprivate

Initial value:

= {
    "not set",
    "loc",
    "literal"
}

Definition at line 213 of file Delta_seq_.hpp.

Referenced by CDelta_seq_Base::SelectionName(), and CDelta_seq_Base::ThrowInvalidSelection().

sm_SelectionNames [4/9]

const char *const CNumbering_Base::sm_SelectionNames

staticprivate

Initial value:

= {
    "not set",
    "cont",
    "enum",
    "ref",
    "real"
}

Definition at line 272 of file Numbering_.hpp.

Referenced by CNumbering_Base::SelectionName(), and CNumbering_Base::ThrowInvalidSelection().

sm_SelectionNames [5/9]

const char *const CSeq_annot_Base::C_Data::sm_SelectionNames

staticprivate

Initial value:

= {
    "not set",
    "ftable",
    "align",
    "graph",
    "ids",
    "locs",
    "seq-table"
}

Definition at line 344 of file Seq_annot_.hpp.

sm_SelectionNames [6/9]

const char *const CSeq_data_Base::sm_SelectionNames

staticprivate

Initial value:

= {
    "not set",
    "iupacna",
    "iupacaa",
    "ncbi2na",
    "ncbi4na",
    "ncbi8na",
    "ncbipna",
    "ncbi8aa",
    "ncbieaa",
    "ncbipaa",
    "ncbistdaa",
    "gap"
}

Definition at line 448 of file Seq_data_.hpp.

Referenced by CSeq_data_Base::SelectionName(), and CSeq_data_Base::ThrowInvalidSelection().

sm_SelectionNames [7/9]

const char *const CSeq_ext_Base::sm_SelectionNames

staticprivate

Initial value:

= {
    "not set",
    "seg",
    "ref",
    "map",
    "delta"
}

Definition at line 274 of file Seq_ext_.hpp.

Referenced by CSeq_ext_Base::SelectionName(), and CSeq_ext_Base::ThrowInvalidSelection().

sm_SelectionNames [8/9]

const char *const CSeq_hist_Base::C_Deleted::sm_SelectionNames

staticprivate

Initial value:

= {
    "not set",
    "bool",
    "date"
}

Definition at line 240 of file Seq_hist_.hpp.

sm_SelectionNames [9/9]

const char *const CSeqdesc_Base::sm_SelectionNames

staticprivate

Initial value:

= {
    "not set",
    "mol-type",
    "modif",
    "method",
    "name",
    "title",
    "org",
    "comment",
    "num",
    "maploc",
    "pir",
    "genbank",
    "pub",
    "region",
    "user",
    "sp",
    "dbxref",
    "embl",
    "create-date",
    "update-date",
    "prf",
    "pdb",
    "het",
    "source",
    "molinfo",
    "modelev"
}

Definition at line 881 of file Seqdesc_.hpp.

Referenced by CSeqdesc_Base::SelectionName(), and CSeqdesc_Base::ThrowInvalidSelection().