NCBI C++ ToolKit
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Classes | |
class | CContact_info |
CContact_info –. More... | |
class | CContact_info_Base |
who to contact to discuss the submission More... | |
class | CSeq_submit_Base |
deletions of entries More... | |
class | CSeq_submit_Base::C_Data |
C_Data –. More... | |
class | CSubmit_block |
CSubmit_block –. More... | |
class | CSubmit_block_Base |
CSubmit_block_Base –. More... | |
typedef list< string > CContact_info_Base::TAddress |
Definition at line 94 of file Contact_info_.hpp.
typedef list< CRef< CSeq_annot > > CSeq_submit_Base::C_Data::TAnnots |
Definition at line 171 of file Seq_submit_.hpp.
typedef CCit_sub CSubmit_block_Base::TCit |
Definition at line 103 of file Submit_block_.hpp.
typedef string CSubmit_block_Base::TComment |
Definition at line 109 of file Submit_block_.hpp.
typedef CAuthor CContact_info_Base::TContact |
Definition at line 104 of file Contact_info_.hpp.
Definition at line 102 of file Submit_block_.hpp.
typedef C_Data CSeq_submit_Base::TData |
Definition at line 261 of file Seq_submit_.hpp.
typedef list< CRef< CSeq_id > > CSeq_submit_Base::C_Data::TDelete |
Definition at line 172 of file Seq_submit_.hpp.
typedef string CContact_info_Base::TEmail |
Definition at line 97 of file Contact_info_.hpp.
typedef list< CRef< CSeq_entry > > CSeq_submit_Base::C_Data::TEntrys |
Definition at line 170 of file Seq_submit_.hpp.
typedef string CContact_info_Base::TFax |
Definition at line 96 of file Contact_info_.hpp.
Definition at line 102 of file Contact_info_.hpp.
typedef bool CSubmit_block_Base::THup |
Definition at line 104 of file Submit_block_.hpp.
typedef string CContact_info_Base::TLast_name |
Definition at line 101 of file Contact_info_.hpp.
Definition at line 122 of file Contact_info_.hpp.
Definition at line 269 of file Seq_submit_.hpp.
Definition at line 123 of file Submit_block_.hpp.
Definition at line 103 of file Contact_info_.hpp.
typedef string CContact_info_Base::TName |
Definition at line 93 of file Contact_info_.hpp.
Definition at line 99 of file Contact_info_.hpp.
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Definition at line 67 of file Contact_info.hpp.
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Definition at line 82 of file Contact_info_.hpp.
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Definition at line 82 of file Seq_submit_.hpp.
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Definition at line 99 of file Seq_submit_.hpp.
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Definition at line 67 of file Submit_block.hpp.
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Definition at line 80 of file Submit_block_.hpp.
typedef vector< char > CContact_info_Base::TPassword |
Definition at line 100 of file Contact_info_.hpp.
typedef string CContact_info_Base::TPhone |
Definition at line 95 of file Contact_info_.hpp.
typedef CDate CSubmit_block_Base::TReldate |
Definition at line 105 of file Submit_block_.hpp.
typedef CSubmit_block CSeq_submit_Base::TSub |
Definition at line 260 of file Seq_submit_.hpp.
typedef int CSubmit_block_Base::TSubtype |
Definition at line 106 of file Submit_block_.hpp.
typedef string CContact_info_Base::TTelex |
Definition at line 98 of file Contact_info_.hpp.
typedef string CSubmit_block_Base::TTool |
Definition at line 107 of file Submit_block_.hpp.
typedef string CSubmit_block_Base::TUser_tag |
Definition at line 108 of file Submit_block_.hpp.
Choice variants.
Enumerator | |
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e_not_set | No variant selected. |
e_Entrys | sequence(s) |
e_Annots | annotation(s) |
e_Delete |
Definition at line 111 of file Seq_submit_.hpp.
Maximum+1 value of the choice variant enumerator.
Enumerator | |
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e_MaxChoice | == e_Delete+1 |
Definition at line 118 of file Seq_submit_.hpp.
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strong |
Enumerator | |
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e__allMandatory | |
e_name | |
e_address | |
e_phone | |
e_fax | |
e_email | |
e_telex | |
e_owner_id | |
e_password | |
e_last_name | |
e_first_name | |
e_middle_initial | |
e_contact |
Definition at line 107 of file Contact_info_.hpp.
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Enumerator | |
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e__allMandatory | |
e_sub | |
e_data |
Definition at line 264 of file Seq_submit_.hpp.
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Enumerator | |
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e__allMandatory | |
e_contact | |
e_cit | |
e_hup | |
e_reldate | |
e_subtype | |
e_tool | |
e_user_tag | |
e_comment |
Definition at line 112 of file Submit_block_.hpp.
type of submission
Enumerator | |
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eSubtype_new | new data |
eSubtype_update | update by author |
eSubtype_revision | 3rd party (non-author) update |
eSubtype_other |
Definition at line 91 of file Submit_block_.hpp.
END_CHOICE_INFO CSeq_submit_Base::C_Data::C_Data | ( | void | ) |
Definition at line 129 of file Seq_submit_.cpp.
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Check if it is safe to call GetAddress method.
Definition at line 659 of file Contact_info_.hpp.
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Check if it is safe to call GetCit method.
Definition at line 504 of file Submit_block_.hpp.
Referenced by CDiscrepancyVisitorImpl< _Name >::Autofix().
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Check if it is safe to call GetComment method.
Definition at line 746 of file Submit_block_.hpp.
References CSubmit_block_Base::IsSetComment().
Referenced by CSubmit_block_Base::GetComment(), and CReadBlastApp::printGeneralInfo().
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Check if it is safe to call GetContact method.
Definition at line 1062 of file Contact_info_.hpp.
References CContact_info_Base::IsSetContact().
Referenced by CContact_info_Base::GetContact().
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Check if it is safe to call GetContact method.
Definition at line 474 of file Submit_block_.hpp.
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Check if it is safe to call GetData method.
Definition at line 498 of file Seq_submit_.hpp.
Referenced by CFlatFileGenerator::Generate(), CDiscrepancyContext::ParseObject(), CIndexerProjectItemExtension::ProjectItemCreated(), and CSeqMasterIndex::x_Initialize().
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Check if it is safe to call GetEmail method.
Definition at line 778 of file Contact_info_.hpp.
References CContact_info_Base::IsSetEmail().
Referenced by CContact_info_Base::GetEmail().
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Check if it is safe to call GetFax method.
Definition at line 731 of file Contact_info_.hpp.
References CContact_info_Base::IsSetFax().
Referenced by CContact_info_Base::GetFax().
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Check if it is safe to call GetFirst_name method.
Definition at line 968 of file Contact_info_.hpp.
References CContact_info_Base::IsSetFirst_name().
Referenced by CContact_info_Base::GetFirst_name().
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Check if it is safe to call GetHup method.
Definition at line 534 of file Submit_block_.hpp.
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Check if it is safe to call GetLast_name method.
Definition at line 921 of file Contact_info_.hpp.
References CContact_info_Base::IsSetLast_name().
Referenced by CContact_info_Base::GetLast_name().
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Check if it is safe to call GetMiddle_initial method.
Definition at line 1015 of file Contact_info_.hpp.
References CContact_info_Base::IsSetMiddle_initial().
Referenced by CContact_info_Base::GetMiddle_initial().
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Check if it is safe to call GetName method.
Definition at line 612 of file Contact_info_.hpp.
References CContact_info_Base::IsSetName().
Referenced by CContact_info_Base::GetName().
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Check if it is safe to call GetOwner_id method.
Definition at line 872 of file Contact_info_.hpp.
References CContact_info_Base::IsSetOwner_id().
Referenced by CContact_info_Base::GetOwner_id().
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Check if it is safe to call GetPassword method.
Definition at line 893 of file Contact_info_.hpp.
References CContact_info_Base::IsSetPassword().
Referenced by CContact_info_Base::GetPassword().
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Check if it is safe to call GetPhone method.
Definition at line 684 of file Contact_info_.hpp.
References CContact_info_Base::IsSetPhone().
Referenced by CContact_info_Base::GetPhone().
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Check if it is safe to call GetReldate method.
Definition at line 584 of file Submit_block_.hpp.
References CSubmit_block_Base::IsSetReldate().
Referenced by CSubmit_block_Base::GetReldate(), and CReadBlastApp::printGeneralInfo().
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Check if it is safe to call GetSub method.
Definition at line 468 of file Seq_submit_.hpp.
Referenced by CFlatFileGenerator::Generate(), and CSeqMasterIndex::x_Initialize().
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Check if it is safe to call GetSubtype method.
Definition at line 605 of file Submit_block_.hpp.
References CSubmit_block_Base::IsSetSubtype().
Referenced by CSubmit_block_Base::GetSubtype().
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Check if it is safe to call GetTelex method.
Definition at line 825 of file Contact_info_.hpp.
References CContact_info_Base::IsSetTelex().
Referenced by CContact_info_Base::GetTelex().
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Check if it is safe to call GetTool method.
Definition at line 652 of file Submit_block_.hpp.
References CSubmit_block_Base::IsSetTool().
Referenced by CSubmit_block_Base::GetTool(), and CReadBlastApp::printGeneralInfo().
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Check if it is safe to call GetUser_tag method.
Definition at line 699 of file Submit_block_.hpp.
References CSubmit_block_Base::IsSetUser_tag().
Referenced by CSubmit_block_Base::GetUser_tag(), and CReadBlastApp::printGeneralInfo().
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Definition at line 86 of file Contact_info.hpp.
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END_CLASS_INFO CContact_info_Base::CContact_info_Base | ( | void | ) |
Definition at line 184 of file Contact_info_.cpp.
References CContact_info_Base::m_set_State.
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Verify selection, throw exception if it differs from the expected.
index | Expected selection. |
Definition at line 379 of file Seq_submit_.hpp.
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END_CLASS_INFO CSeq_submit_Base::CSeq_submit_Base | ( | void | ) |
Definition at line 187 of file Seq_submit_.cpp.
References CObject::IsAllocatedInPool(), CSeq_submit_Base::m_set_State, CSeq_submit_Base::ResetData(), and CSeq_submit_Base::ResetSub().
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Definition at line 86 of file Submit_block.hpp.
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END_CLASS_INFO CSubmit_block_Base::CSubmit_block_Base | ( | void | ) |
Definition at line 157 of file Submit_block_.cpp.
References CObject::IsAllocatedInPool(), CSubmit_block_Base::m_set_State, CSubmit_block_Base::ResetCit(), and CSubmit_block_Base::ResetContact().
CContact_info_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CSeq_submit_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CSeq_submit_Base::C_Data::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
CSubmit_block_Base::DECLARE_INTERNAL_TYPE_INFO | ( | ) |
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Definition at line 78 of file Seq_submit_.cpp.
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Access to ESubtype's attributes (values, names) as defined in spec.
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Get the Address member data.
Definition at line 665 of file Contact_info_.hpp.
References CContact_info_Base::m_Address.
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Get the variant data.
Definition at line 428 of file Seq_submit_.hpp.
Referenced by CScope_Impl::x_MakeDummyTSE().
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Get the Cit member data.
Definition at line 510 of file Submit_block_.hpp.
References CSubmit_block_Base::m_Cit, and CSubmit_block_Base::ResetCit().
Referenced by CDiscrepancyVisitorImpl< _Name >::Autofix(), CSequenceEditingEventHandler::CreateSeqSubmit(), CReferenceItem::CReferenceItem(), IEditingActionDesc::Find(), IEditingActionDesc::FindRelated(), GetAuthList(), CPubField::GetVals(), CDiscrepancyContext::PopulateSubmit(), CBiosampleChkApp::ProcessSeqSubmit(), CFindASN1Dlg::ReplaceInSubmit(), SeqEntryFromSeqSubmit(), CNewCleanup_imp::SubmitblockBC(), CMacroFunction_AuthorFix::TheFunction(), CValidError_imp::Validate(), CValidError_imp::ValidateSubmitBlock(), CDesktopDataBuilder::x_CreateSeqSubmit(), and CAgpconvertApplication::x_LoadTemplate().
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Get the Comment member data.
Definition at line 752 of file Submit_block_.hpp.
References CSubmit_block_Base::CanGetComment(), CSubmit_block_Base::m_Comment, and CSerialObject::ThrowUnassigned().
Referenced by CReadBlastApp::printGeneralInfo(), and CFindASN1Dlg::ReplaceInSubmit().
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Get the Contact member data.
Definition at line 1068 of file Contact_info_.hpp.
References CContact_info_Base::CanGetContact(), CContact_info_Base::m_Contact, and CSerialObject::ThrowUnassigned().
Referenced by CDiscrepancyContext::GetPerson_id(), CBiosampleChkApp::ProcessSeqSubmit(), and CValidError_imp::ValidateSubmitBlock().
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Get the Contact member data.
Definition at line 480 of file Submit_block_.hpp.
References CSubmit_block_Base::m_Contact, and CSubmit_block_Base::ResetContact().
Referenced by CDiscrepancyContext::GetPerson_id(), CBiosampleChkApp::ProcessSeqSubmit(), CFindASN1Dlg::ReplaceInSubmit(), CValidError_imp::ValidateSubmitBlock(), and CDesktopDataBuilder::x_CreateSeqSubmit().
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Get the Data member data.
Definition at line 504 of file Seq_submit_.hpp.
References CSeq_submit_Base::m_Data, and CSeq_submit_Base::ResetData().
Referenced by CReadBlastApp::AnalyzeSeqs(), CReadBlastApp::AnalyzeSeqsViaBioseqs(), CAttachedHandles::Attach(), BOOST_AUTO_TEST_CASE(), Convert_SeqSubmit_Seq_entry(), Convert_SeqSubmit_Seq_id(), CNewCleanup_imp::ExtendedCleanupSeqSubmit(), CFlatFileGenerator::Generate(), CBiosampleChkApp::GetBiosampleDescriptorsFromSeqSubmit(), GetSeqEntryFromSeqSubmit(), CTSE_Info::GetTopLevelSeq_submit(), CAsn2FlatApp::HandleSeqSubmit(), CSubmissionWizard::ImportTemplate(), CSeq_submit::IsAnnots(), CSeq_submit::IsDelete(), CSeq_submit::IsEntrys(), CDiscrepancyContext::ParseObject(), CSequenceEditingEventHandler::PrepareSeqSubmit(), subfuse::CSubmissionCollector::ProcessFile(), CAsnvalThreadState::ProcessSeqSubmit(), CBiosampleChkApp::ProcessSeqSubmit(), CTLSHandler::ProcessSeqSubmit(), CIndexerProjectItemExtension::ProjectItemCreated(), CReadBlastApp::RemoveProblems(), CAsn2Asn::RunAsn2Asn(), s_GetFirstBioseqName(), s_SaveToSmartClient(), SeqEntryFromSeqSubmit(), CNewCleanup_imp::SetGlobalFlags(), CValidErrorFormat::SetSuppressionRules(), CReadBlastApp::SortSeqs(), CTable2AsnValidator::ValCollect(), CValidError_imp::Validate(), CLocalFileRestorer::x_AttachNewObject(), CLocalFileRestorer::x_DetachOrigObject(), CValidatePanel::x_GetObjectsFromProjectItem(), CSeqMasterIndex::x_Initialize(), CTextPanel::x_LoadFlatFile(), CAgpconvertApplication::x_LoadTemplate(), CLDS2_DataLoader::x_LoadTSE(), CScope_Impl::x_MakeDummyTSE(), CSeqDesktopPanel::x_SetMaxExpansionLevel(), and CMultiReader::xReadASN1Text().
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Get the Email member data.
Definition at line 784 of file Contact_info_.hpp.
References CContact_info_Base::CanGetEmail(), CContact_info_Base::m_Email, and CSerialObject::ThrowUnassigned().
Referenced by CFindASN1Dlg::ReplaceInSubmit().
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Get the variant data.
Definition at line 408 of file Seq_submit_.hpp.
Referenced by CReadBlastApp::AnalyzeSeqs(), CReadBlastApp::AnalyzeSeqsViaBioseqs(), BOOST_AUTO_TEST_CASE(), Convert_SeqSubmit_Seq_entry(), CFlatFileGenerator::Generate(), CBiosampleChkApp::GetBiosampleDescriptorsFromSeqSubmit(), CAsn2FlatApp::HandleSeqSubmit(), CSubmissionWizard::ImportTemplate(), CDiscrepancyContext::ParseObject(), CSequenceEditingEventHandler::PrepareSeqSubmit(), CBiosampleChkApp::ProcessSeqSubmit(), CTLSHandler::ProcessSeqSubmit(), CAsn2Asn::RunAsn2Asn(), s_GetFirstBioseqName(), s_SaveToSmartClient(), SeqEntryFromSeqSubmit(), CNewCleanup_imp::SetGlobalFlags(), CValidErrorFormat::SetSuppressionRules(), CReadBlastApp::SortSeqs(), CTable2AsnValidator::ValCollect(), CLocalFileRestorer::x_AttachNewObject(), CLocalFileRestorer::x_DetachOrigObject(), CValidatePanel::x_GetObjectsFromProjectItem(), CSeqMasterIndex::x_Initialize(), CAgpconvertApplication::x_LoadTemplate(), CLDS2_DataLoader::x_LoadTSE(), CScope_Impl::x_MakeDummyTSE(), and CMultiReader::xReadASN1Text().
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Get the Fax member data.
Definition at line 737 of file Contact_info_.hpp.
References CContact_info_Base::CanGetFax(), CContact_info_Base::m_Fax, and CSerialObject::ThrowUnassigned().
Referenced by CFindASN1Dlg::ReplaceInSubmit().
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Get the First_name member data.
Definition at line 974 of file Contact_info_.hpp.
References CContact_info_Base::CanGetFirst_name(), CContact_info_Base::m_First_name, and CSerialObject::ThrowUnassigned().
Referenced by CFindASN1Dlg::ReplaceInSubmit().
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Get the Hup member data.
Definition at line 553 of file Submit_block_.hpp.
References CSubmit_block_Base::m_Hup.
Referenced by CValidError_imp::ValidateSubmitBlock().
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Get the Last_name member data.
Definition at line 927 of file Contact_info_.hpp.
References CContact_info_Base::CanGetLast_name(), CContact_info_Base::m_Last_name, and CSerialObject::ThrowUnassigned().
Referenced by CFindASN1Dlg::ReplaceInSubmit().
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Get the Middle_initial member data.
Definition at line 1021 of file Contact_info_.hpp.
References CContact_info_Base::CanGetMiddle_initial(), CContact_info_Base::m_Middle_initial, and CSerialObject::ThrowUnassigned().
Referenced by CFindASN1Dlg::ReplaceInSubmit().
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Get the Name member data.
Definition at line 618 of file Contact_info_.hpp.
References CContact_info_Base::CanGetName(), CContact_info_Base::m_Name, and CSerialObject::ThrowUnassigned().
Referenced by CFindASN1Dlg::ReplaceInSubmit().
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Get the Owner_id member data.
Definition at line 878 of file Contact_info_.hpp.
References CContact_info_Base::CanGetOwner_id(), CContact_info_Base::m_Owner_id, and CSerialObject::ThrowUnassigned().
Referenced by CFindASN1Dlg::ReplaceInSubmit().
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Get the Password member data.
Definition at line 899 of file Contact_info_.hpp.
References CContact_info_Base::CanGetPassword(), CContact_info_Base::m_Password, and CSerialObject::ThrowUnassigned().
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Get the Phone member data.
Definition at line 690 of file Contact_info_.hpp.
References CContact_info_Base::CanGetPhone(), CContact_info_Base::m_Phone, and CSerialObject::ThrowUnassigned().
Referenced by CFindASN1Dlg::ReplaceInSubmit().
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Get the Reldate member data.
Definition at line 590 of file Submit_block_.hpp.
References CSubmit_block_Base::CanGetReldate(), CSubmit_block_Base::m_Reldate, and CSerialObject::ThrowUnassigned().
Referenced by CReadBlastApp::printGeneralInfo(), and CValidError_imp::ValidateSubmitBlock().
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Get the Sub member data.
Definition at line 474 of file Seq_submit_.hpp.
References CSeq_submit_Base::m_Sub, and CSeq_submit_Base::ResetSub().
Referenced by CreateEditorForObject(), CMacroBioData_PubdescIter::CSubmitblockIter::CSubmitblockIter(), CBioseqEditor::EditSelection(), CEditingBtnsPanel::EditSubmitBlock(), CFlatFileGenerator::Generate(), IPubDescEditor::GetCommand(), GetObjects(), CDiscrepancyContext::GetPerson_id(), CDiscrepancyContext::GetSubmit_block(), CTSE_Info::GetTopLevelSubmit_block(), CAsn2FlatApp::HandleSeqSubmit(), CSubmissionWizard::ImportTemplate(), CDesktopViewContext::OnPasteSelection(), CDiscrepancyContext::PopulateSubmit(), CReadBlastApp::printGeneralInfo(), CBiosampleChkApp::ProcessSeqSubmit(), CAgpconvertApplication::Run(), CDemoApp::Run(), SeqEntryFromSeqSubmit(), subfuse::StartWriting(), CValidError_imp::Validate(), CSeqMasterIndex::x_Initialize(), CTextPanel::x_LoadFlatFile(), CAgpconvertApplication::x_LoadTemplate(), and CTextPanel::x_SelectFlatFileSequence().
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Get the Subtype member data.
Definition at line 618 of file Submit_block_.hpp.
References CSubmit_block_Base::CanGetSubtype(), CSubmit_block_Base::m_Subtype, and CSerialObject::ThrowUnassigned().
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Get the Telex member data.
Definition at line 831 of file Contact_info_.hpp.
References CContact_info_Base::CanGetTelex(), CContact_info_Base::m_Telex, and CSerialObject::ThrowUnassigned().
Referenced by CFindASN1Dlg::ReplaceInSubmit().
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Get the Tool member data.
Definition at line 658 of file Submit_block_.hpp.
References CSubmit_block_Base::CanGetTool(), CSubmit_block_Base::m_Tool, and CSerialObject::ThrowUnassigned().
Referenced by CReadBlastApp::printGeneralInfo(), CFindASN1Dlg::ReplaceInSubmit(), and CValidError_imp::Validate().
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Get the User_tag member data.
Definition at line 705 of file Submit_block_.hpp.
References CSubmit_block_Base::CanGetUser_tag(), CSubmit_block_Base::m_User_tag, and CSerialObject::ThrowUnassigned().
Referenced by CReadBlastApp::printGeneralInfo(), and CFindASN1Dlg::ReplaceInSubmit().
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Check if variant Annots is selected.
Annots type is defined as 'typedef list< CRef< CSeq_annot > > TAnnots'.
Definition at line 422 of file Seq_submit_.hpp.
Referenced by CSeq_submit::IsAnnots(), and CSeq_submit::IsDelete().
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Check if variant Delete is selected.
Delete type is defined as 'typedef list< CRef< CSeq_id > > TDelete'.
Definition at line 442 of file Seq_submit_.hpp.
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Check if variant Entrys is selected.
Entrys type is defined as 'typedef list< CRef< CSeq_entry > > TEntrys'.
Definition at line 402 of file Seq_submit_.hpp.
Referenced by CReadBlastApp::AnalyzeSeqs(), CReadBlastApp::AnalyzeSeqsViaBioseqs(), Convert_SeqSubmit_Seq_entry(), Convert_SeqSubmit_Seq_id(), CNewCleanup_imp::ExtendedCleanupSeqSubmit(), CFlatFileGenerator::Generate(), CBiosampleChkApp::GetBiosampleDescriptorsFromSeqSubmit(), CAsn2FlatApp::HandleSeqSubmit(), CSubmissionWizard::ImportTemplate(), CSeq_submit::IsEntrys(), CDiscrepancyContext::ParseObject(), CSequenceEditingEventHandler::PrepareSeqSubmit(), subfuse::CSubmissionCollector::ProcessFile(), CAsnvalThreadState::ProcessSeqSubmit(), CBiosampleChkApp::ProcessSeqSubmit(), CTLSHandler::ProcessSeqSubmit(), CReadBlastApp::RemoveProblems(), CReadBlastApp::SortSeqs(), CValidatePanel::x_GetObjectsFromProjectItem(), CSeqMasterIndex::x_Initialize(), and CAgpconvertApplication::x_LoadTemplate().
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Check if a value has been assigned to Address data member.
Data member Address is optional; its type is defined as 'typedef list< string > TAddress'
Definition at line 653 of file Contact_info_.hpp.
References CContact_info_Base::m_set_State.
Referenced by CFindASN1Dlg::ReplaceInSubmit().
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citation for this submission Check if a value has been assigned to Cit data member.
Data member Cit is mandatory; its type is defined as 'typedef CCit_sub TCit'
Definition at line 498 of file Submit_block_.hpp.
References CSubmit_block_Base::m_Cit.
Referenced by CPubField::ClearVal(), CReferenceItem::CReferenceItem(), CMacroBioData_PubdescIter::CSubmitblockIter::CSubmitblockIter(), GetAuthList(), CEditPubDlg::GetSelectedPub(), CPubField::GetStatus(), CPubField::GetVals(), CDiscrepancyContext::PopulateSubmit(), CBiosampleChkApp::ProcessSeqSubmit(), CFindASN1Dlg::ReplaceInSubmit(), SeqEntryFromSeqSubmit(), CNewCleanup_imp::SubmitblockBC(), CMacroFunction_AuthorFix::TheFunction(), CMacroFunction_SetPubAffil::TheFunction(), CMacroFunction_SetPubAuthor::TheFunction(), CMacroFunction_AddPubAuthor::TheFunction(), CMacroFunction_AddAuthorList::TheFunction(), CMacroFunction_SetPubDate::TheFunction(), CMacroFunction_SetPubDateField::TheFunction(), CValidError_imp::ValidateSubmitBlock(), CAutogeneratedCleanup::x_BasicCleanupSeqSubmit_sub(), CDesktopDataBuilder::x_CreateSeqSubmit(), and CMacroFunction_SetPubTitle::x_SetTitleInSubmitBlock().
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user comments/advice to database Check if a value has been assigned to Comment data member.
Data member Comment is optional; its type is defined as 'typedef string TComment'
Definition at line 740 of file Submit_block_.hpp.
References CSubmit_block_Base::m_set_State.
Referenced by CSubmit_block_Base::CanGetComment(), CFindASN1Dlg::ReplaceInSubmit(), and CSubmit_block_Base::SetComment().
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WARNING: this will replace the above Check if a value has been assigned to Contact data member.
Data member Contact is optional; its type is defined as 'typedef CAuthor TContact'
Definition at line 1056 of file Contact_info_.hpp.
References CContact_info_Base::m_Contact.
Referenced by CContact_info_Base::CanGetContact(), CDiscrepancyContext::GetPerson_id(), CBiosampleChkApp::ProcessSeqSubmit(), CFindASN1Dlg::ReplaceInSubmit(), CValidError_imp::ValidateSubmitBlock(), and CAutogeneratedCleanup::x_BasicCleanupContactInfo().
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who to contact Check if a value has been assigned to Contact data member.
Data member Contact is mandatory; its type is defined as 'typedef CContact_info TContact'
Definition at line 468 of file Submit_block_.hpp.
References CSubmit_block_Base::m_Contact.
Referenced by CDiscrepancyContext::GetPerson_id(), CBiosampleChkApp::ProcessSeqSubmit(), CFindASN1Dlg::ReplaceInSubmit(), CValidError_imp::ValidateSubmitBlock(), CAutogeneratedCleanup::x_BasicCleanupSeqSubmit_sub(), and CDesktopDataBuilder::x_CreateSeqSubmit().
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Check if a value has been assigned to Data data member.
Data member Data is mandatory; its type is defined as 'typedef C_Data TData'
Definition at line 492 of file Seq_submit_.hpp.
References CSeq_submit_Base::m_Data, and CRef< C, Locker >::NotEmpty().
Referenced by CAutogeneratedCleanup::BasicCleanupSeqSubmit(), CAutogeneratedExtendedCleanup::ExtendedCleanupSeqSubmit(), CNewCleanup_imp::ExtendedCleanupSeqSubmit(), GetSeqEntryFromSeqSubmit(), CAsn2FlatApp::HandleSeqSubmit(), CSubmissionWizard::ImportTemplate(), CSeq_submit::IsAnnots(), CSeq_submit::IsDelete(), CSeq_submit::IsEntrys(), CSequenceEditingEventHandler::PrepareSeqSubmit(), s_GetFirstBioseqName(), s_SaveToSmartClient(), CLocalFileRestorer::x_AttachNewObject(), CLocalFileRestorer::x_DetachOrigObject(), CAsn2FlatApp::x_GenerateTraditionally(), CValidatePanel::x_GetObjectsFromProjectItem(), CTextPanel::x_LoadFlatFile(), and CSeqDesktopPanel::x_SetMaxExpansionLevel().
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Check if a value has been assigned to Email data member.
Data member Email is optional; its type is defined as 'typedef string TEmail'
Definition at line 772 of file Contact_info_.hpp.
References CContact_info_Base::m_set_State.
Referenced by CContact_info_Base::CanGetEmail(), CFindASN1Dlg::ReplaceInSubmit(), and CContact_info_Base::SetEmail().
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Check if a value has been assigned to Fax data member.
Data member Fax is optional; its type is defined as 'typedef string TFax'
Definition at line 725 of file Contact_info_.hpp.
References CContact_info_Base::m_set_State.
Referenced by CContact_info_Base::CanGetFax(), CFindASN1Dlg::ReplaceInSubmit(), and CContact_info_Base::SetFax().
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Check if a value has been assigned to First_name data member.
Data member First_name is optional; its type is defined as 'typedef string TFirst_name'
Definition at line 962 of file Contact_info_.hpp.
References CContact_info_Base::m_set_State.
Referenced by CContact_info_Base::CanGetFirst_name(), CFindASN1Dlg::ReplaceInSubmit(), and CContact_info_Base::SetFirst_name().
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hold until publish Check if a value has been assigned to Hup data member.
Data member Hup is optional with default false; its type is defined as 'typedef bool THup'
Definition at line 528 of file Submit_block_.hpp.
References CSubmit_block_Base::m_set_State.
Referenced by CSubmit_block_Base::SetHup(), and CValidError_imp::ValidateSubmitBlock().
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structured to replace name above Check if a value has been assigned to Last_name data member.
Data member Last_name is optional; its type is defined as 'typedef string TLast_name'
Definition at line 915 of file Contact_info_.hpp.
References CContact_info_Base::m_set_State.
Referenced by CContact_info_Base::CanGetLast_name(), CFindASN1Dlg::ReplaceInSubmit(), and CContact_info_Base::SetLast_name().
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Check if a value has been assigned to Middle_initial data member.
Data member Middle_initial is optional; its type is defined as 'typedef string TMiddle_initial'
Definition at line 1009 of file Contact_info_.hpp.
References CContact_info_Base::m_set_State.
Referenced by CContact_info_Base::CanGetMiddle_initial(), CFindASN1Dlg::ReplaceInSubmit(), and CContact_info_Base::SetMiddle_initial().
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OBSOLETE: will be removed Check if a value has been assigned to Name data member.
Data member Name is optional; its type is defined as 'typedef string TName'
Definition at line 606 of file Contact_info_.hpp.
References CContact_info_Base::m_set_State.
Referenced by CContact_info_Base::CanGetName(), CFindASN1Dlg::ReplaceInSubmit(), and CContact_info_Base::SetName().
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for owner accounts Check if a value has been assigned to Owner_id data member.
Data member Owner_id is optional; its type is defined as 'typedef CObject_id TOwner_id'
Definition at line 866 of file Contact_info_.hpp.
References CContact_info_Base::m_Owner_id.
Referenced by CContact_info_Base::CanGetOwner_id(), and CFindASN1Dlg::ReplaceInSubmit().
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Check if a value has been assigned to Password data member.
Data member Password is optional; its type is defined as 'typedef vector< char > TPassword'
Definition at line 887 of file Contact_info_.hpp.
References CContact_info_Base::m_set_State.
Referenced by CContact_info_Base::CanGetPassword().
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Check if a value has been assigned to Phone data member.
Data member Phone is optional; its type is defined as 'typedef string TPhone'
Definition at line 678 of file Contact_info_.hpp.
References CContact_info_Base::m_set_State.
Referenced by CContact_info_Base::CanGetPhone(), CFindASN1Dlg::ReplaceInSubmit(), and CContact_info_Base::SetPhone().
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release by date Check if a value has been assigned to Reldate data member.
Data member Reldate is optional; its type is defined as 'typedef CDate TReldate'
Definition at line 578 of file Submit_block_.hpp.
References CSubmit_block_Base::m_Reldate.
Referenced by CSubmit_block_Base::CanGetReldate(), CValidError_imp::ValidateSubmitBlock(), and CAutogeneratedCleanup::x_BasicCleanupSeqSubmit_sub().
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Check if a value has been assigned to Sub data member.
Data member Sub is mandatory; its type is defined as 'typedef CSubmit_block TSub'
Definition at line 462 of file Seq_submit_.hpp.
References CSeq_submit_Base::m_Sub.
Referenced by CAutogeneratedCleanup::BasicCleanupSeqSubmit(), CreateEditorForObject(), CBioseqEditor::EditSelection(), CEditingBtnsPanel::EditSubmitBlock(), IPubDescEditor::GetCommand(), CDiscrepancyContext::GetPerson_id(), CDiscrepancyContext::GetSubmit_block(), CAsn2FlatApp::HandleSeqSubmit(), CDesktopViewContext::OnPasteSelection(), CDiscrepancyContext::PopulateSubmit(), CBiosampleChkApp::ProcessSeqSubmit(), CReadSubmitBlockHook::ReadClassMember(), SeqEntryFromSeqSubmit(), CValidError_imp::Validate(), CAsn2FlatApp::x_GenerateTraditionally(), CTextPanel::x_LoadFlatFile(), and CTextPanel::x_SelectFlatFileSequence().
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Check if a value has been assigned to Subtype data member.
Data member Subtype is optional; its type is defined as 'typedef int TSubtype'
Definition at line 599 of file Submit_block_.hpp.
References CSubmit_block_Base::m_set_State.
Referenced by CSubmit_block_Base::CanGetSubtype(), and CSubmit_block_Base::SetSubtype().
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Check if a value has been assigned to Telex data member.
Data member Telex is optional; its type is defined as 'typedef string TTelex'
Definition at line 819 of file Contact_info_.hpp.
References CContact_info_Base::m_set_State.
Referenced by CContact_info_Base::CanGetTelex(), CFindASN1Dlg::ReplaceInSubmit(), and CContact_info_Base::SetTelex().
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tool used to make submission Check if a value has been assigned to Tool data member.
Data member Tool is optional; its type is defined as 'typedef string TTool'
Definition at line 646 of file Submit_block_.hpp.
References CSubmit_block_Base::m_set_State.
Referenced by CSubmit_block_Base::CanGetTool(), CFindASN1Dlg::ReplaceInSubmit(), CSubmit_block_Base::SetTool(), and CValidError_imp::Validate().
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user supplied id for this submission Check if a value has been assigned to User_tag data member.
Data member User_tag is optional; its type is defined as 'typedef string TUser_tag'
Definition at line 693 of file Submit_block_.hpp.
References CSubmit_block_Base::m_set_State.
Referenced by CSubmit_block_Base::CanGetUser_tag(), CFindASN1Dlg::ReplaceInSubmit(), and CSubmit_block_Base::SetUser_tag().
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private |
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Reset the whole object.
Definition at line 146 of file Contact_info_.cpp.
References CContact_info_Base::ResetAddress(), CContact_info_Base::ResetContact(), CContact_info_Base::ResetEmail(), CContact_info_Base::ResetFax(), CContact_info_Base::ResetFirst_name(), CContact_info_Base::ResetLast_name(), CContact_info_Base::ResetMiddle_initial(), CContact_info_Base::ResetName(), CContact_info_Base::ResetOwner_id(), CContact_info_Base::ResetPassword(), CContact_info_Base::ResetPhone(), and CContact_info_Base::ResetTelex().
void CSeq_submit_Base::C_Data::Reset | ( | void | ) |
Reset the whole object.
Definition at line 54 of file Seq_submit_.cpp.
References CSeq_submit_Base::C_Data::e_not_set, CSeq_submit_Base::C_Data::m_choice, and CSeq_submit_Base::C_Data::ResetSelection().
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Reset the whole object.
Definition at line 169 of file Seq_submit_.cpp.
References CSeq_submit_Base::ResetData(), and CSeq_submit_Base::ResetSub().
Referenced by CSeq_submit_Base::C_Data::~C_Data().
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Reset the whole object.
Definition at line 127 of file Submit_block_.cpp.
References CSubmit_block_Base::ResetCit(), CSubmit_block_Base::ResetComment(), CSubmit_block_Base::ResetContact(), CSubmit_block_Base::ResetHup(), CSubmit_block_Base::ResetReldate(), CSubmit_block_Base::ResetSubtype(), CSubmit_block_Base::ResetTool(), and CSubmit_block_Base::ResetUser_tag().
void CContact_info_Base::ResetAddress | ( | void | ) |
Reset Address data member.
Definition at line 58 of file Contact_info_.cpp.
References CContact_info_Base::m_Address, and CContact_info_Base::m_set_State.
Referenced by CContact_info_Base::Reset().
void CSubmit_block_Base::ResetCit | ( | void | ) |
Reset Cit data member.
Definition at line 78 of file Submit_block_.cpp.
References CSubmit_block_Base::m_Cit.
Referenced by CSubmit_block_Base::CSubmit_block_Base(), CSubmit_block_Base::GetCit(), CDesktopViewContext::OnCutSelection(), CSubmit_block_Base::Reset(), and CSubmit_block_Base::SetCit().
void CSubmit_block_Base::ResetComment | ( | void | ) |
Reset Comment data member.
Definition at line 121 of file Submit_block_.cpp.
References CSubmit_block_Base::m_Comment, and CSubmit_block_Base::m_set_State.
Referenced by CSubmit_block_Base::Reset().
void CContact_info_Base::ResetContact | ( | void | ) |
Reset Contact data member.
Definition at line 129 of file Contact_info_.cpp.
References CContact_info_Base::m_Contact.
Referenced by CContact_info_Base::Reset().
END_ENUM_INFO void CSubmit_block_Base::ResetContact | ( | void | ) |
Reset Contact data member.
Definition at line 64 of file Submit_block_.cpp.
References CSubmit_block_Base::m_Contact.
Referenced by CSubmit_block_Base::CSubmit_block_Base(), CSubmit_block_Base::GetContact(), CDesktopViewContext::OnCutSelection(), CSubmit_block_Base::Reset(), and CSubmit_block_Base::SetContact().
void CSeq_submit_Base::ResetData | ( | void | ) |
Reset Data data member.
Definition at line 155 of file Seq_submit_.cpp.
References CSeq_submit_Base::m_Data, and CRef< C, Locker >::Reset().
Referenced by CSeq_submit_Base::CSeq_submit_Base(), CSeq_submit_Base::GetData(), CSeq_submit_Base::Reset(), and CSeq_submit_Base::SetData().
void CContact_info_Base::ResetEmail | ( | void | ) |
Reset Email data member.
Definition at line 76 of file Contact_info_.cpp.
References CContact_info_Base::m_Email, and CContact_info_Base::m_set_State.
Referenced by CContact_info_Base::Reset().
void CContact_info_Base::ResetFax | ( | void | ) |
Reset Fax data member.
Definition at line 70 of file Contact_info_.cpp.
References CContact_info_Base::m_Fax, and CContact_info_Base::m_set_State.
Referenced by CContact_info_Base::Reset().
void CContact_info_Base::ResetFirst_name | ( | void | ) |
Reset First_name data member.
Definition at line 117 of file Contact_info_.cpp.
References CContact_info_Base::m_First_name, and CContact_info_Base::m_set_State.
Referenced by CContact_info_Base::Reset().
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Reset Hup data member.
Definition at line 540 of file Submit_block_.hpp.
References CSubmit_block_Base::m_Hup, and CSubmit_block_Base::m_set_State.
Referenced by CSubmit_block_Base::Reset(), and CSubmit_block_Base::SetDefaultHup().
void CContact_info_Base::ResetLast_name | ( | void | ) |
Reset Last_name data member.
Definition at line 111 of file Contact_info_.cpp.
References CContact_info_Base::m_Last_name, and CContact_info_Base::m_set_State.
Referenced by CContact_info_Base::Reset().
void CContact_info_Base::ResetMiddle_initial | ( | void | ) |
Reset Middle_initial data member.
Definition at line 123 of file Contact_info_.cpp.
References CContact_info_Base::m_Middle_initial, and CContact_info_Base::m_set_State.
Referenced by CContact_info_Base::Reset().
void CContact_info_Base::ResetName | ( | void | ) |
Reset Name data member.
Definition at line 52 of file Contact_info_.cpp.
References CContact_info_Base::m_Name, and CContact_info_Base::m_set_State.
Referenced by CContact_info_Base::Reset().
void CContact_info_Base::ResetOwner_id | ( | void | ) |
Reset Owner_id data member.
Definition at line 88 of file Contact_info_.cpp.
References CContact_info_Base::m_Owner_id.
Referenced by CContact_info_Base::Reset().
void CContact_info_Base::ResetPassword | ( | void | ) |
Reset Password data member.
Definition at line 105 of file Contact_info_.cpp.
References CContact_info_Base::m_Password, and CContact_info_Base::m_set_State.
Referenced by CContact_info_Base::Reset().
void CContact_info_Base::ResetPhone | ( | void | ) |
Reset Phone data member.
Definition at line 64 of file Contact_info_.cpp.
References CContact_info_Base::m_Phone, and CContact_info_Base::m_set_State.
Referenced by CContact_info_Base::Reset().
void CSubmit_block_Base::ResetReldate | ( | void | ) |
Reset Reldate data member.
Definition at line 92 of file Submit_block_.cpp.
References CSubmit_block_Base::m_Reldate.
Referenced by CSubmit_block_Base::Reset().
void CSeq_submit_Base::C_Data::ResetSelection | ( | void | ) |
Reset the selection (set it to e_not_set).
Definition at line 60 of file Seq_submit_.cpp.
References e_not_set.
Referenced by CSeq_submit_Base::C_Data::Reset().
void CSeq_submit_Base::ResetSub | ( | void | ) |
Reset Sub data member.
Definition at line 141 of file Seq_submit_.cpp.
References CSeq_submit_Base::m_Sub.
Referenced by CSeq_submit_Base::CSeq_submit_Base(), CSeq_submit_Base::GetSub(), CSeq_submit_Base::Reset(), and CSeq_submit_Base::SetSub().
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Reset Subtype data member.
Definition at line 611 of file Submit_block_.hpp.
References CSubmit_block_Base::m_set_State, and CSubmit_block_Base::m_Subtype.
Referenced by CSubmit_block_Base::Reset().
void CContact_info_Base::ResetTelex | ( | void | ) |
Reset Telex data member.
Definition at line 82 of file Contact_info_.cpp.
References CContact_info_Base::m_set_State, and CContact_info_Base::m_Telex.
Referenced by CContact_info_Base::Reset().
void CSubmit_block_Base::ResetTool | ( | void | ) |
Reset Tool data member.
Definition at line 109 of file Submit_block_.cpp.
References CSubmit_block_Base::m_set_State, and CSubmit_block_Base::m_Tool.
Referenced by CSubmit_block_Base::Reset().
void CSubmit_block_Base::ResetUser_tag | ( | void | ) |
Reset User_tag data member.
Definition at line 115 of file Submit_block_.cpp.
References CSubmit_block_Base::m_set_State, and CSubmit_block_Base::m_User_tag.
Referenced by CSubmit_block_Base::Reset().
void CSeq_submit_Base::C_Data::Select | ( | E_Choice | index, |
EResetVariant | reset, | ||
CObjectMemoryPool * | pool | ||
) |
Select the requested variant if needed, allocating CObject variants from memory pool.
void CSeq_submit_Base::C_Data::Select | ( | E_Choice | index, |
EResetVariant | reset = eDoResetVariant |
||
) |
Select the requested variant if needed.
index | New selection state. |
reset | Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant. |
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Retrieve selection name (for diagnostic purposes).
index | One of possible selection states. |
Definition at line 103 of file Seq_submit_.cpp.
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Assign a value to Address data member.
Definition at line 671 of file Contact_info_.hpp.
References CContact_info_Base::m_Address, and CContact_info_Base::m_set_State.
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Select the variant.
Definition at line 435 of file Seq_submit_.hpp.
References eDoNotResetVariant.
Referenced by CAutogeneratedCleanup::x_BasicCleanupSeqSubmit_data().
void CSubmit_block_Base::SetCit | ( | CSubmit_block_Base::TCit & | value | ) |
Assign a value to Cit data member.
value | Reference to value. |
Definition at line 87 of file Submit_block_.cpp.
References CSubmit_block_Base::m_Cit, and rapidjson::value.
Referenced by CDiscrepancyVisitorImpl< _Name >::Autofix(), CPubField::ClearVal(), CSequenceEditingEventHandler::CreateSeqSubmit(), CEditObjectSubmit_block::CreateWindow(), CAuthorReplacePanel::GetCommand(), CEditObjectSubmit_block::GetEditCommand(), MakeSeqSubmit(), IEditingActionDesc::Modify(), CDesktopViewContext::OnPasteSelection(), CFindASN1Dlg::ReplaceInSubmit(), CNewCleanup_imp::SubmitblockBC(), CMacroFunction_AuthorFix::TheFunction(), CMacroFunction_SetPubAffil::TheFunction(), CMacroFunction_SetPubAuthor::TheFunction(), CMacroFunction_AddPubAuthor::TheFunction(), CMacroFunction_AddAuthorList::TheFunction(), CMacroFunction_SetPubDate::TheFunction(), CMacroFunction_SetPubDateField::TheFunction(), IAuthorEditor::x_ApplyToSeqSubmit(), CAutogeneratedCleanup::x_BasicCleanupSeqSubmit_sub(), and CMacroFunction_SetPubTitle::x_SetTitleInSubmitBlock().
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Assign a value to Cit data member.
Definition at line 519 of file Submit_block_.hpp.
References CSubmit_block_Base::m_Cit, and CSubmit_block_Base::ResetCit().
Assign a value to Comment data member.
value | Value to assign |
Definition at line 761 of file Submit_block_.hpp.
References CSubmit_block_Base::m_Comment, CSubmit_block_Base::m_set_State, and rapidjson::value.
Referenced by CFindASN1Dlg::ReplaceInSubmit().
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Definition at line 768 of file Submit_block_.hpp.
References CSubmit_block_Base::m_Comment, CSubmit_block_Base::m_set_State, and rapidjson::value.
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Assign a value to Comment data member.
Definition at line 775 of file Submit_block_.hpp.
References CSubmit_block_Base::IsSetComment(), CSubmit_block_Base::m_Comment, CSubmit_block_Base::m_set_State, and CSerialObject::UnassignedString().
void CContact_info_Base::SetContact | ( | CContact_info_Base::TContact & | value | ) |
Assign a value to Contact data member.
value | Reference to value. |
Definition at line 134 of file Contact_info_.cpp.
References CContact_info_Base::m_Contact, and rapidjson::value.
Referenced by CAutogeneratedCleanup::x_BasicCleanupContactInfo().
void CSubmit_block_Base::SetContact | ( | CSubmit_block_Base::TContact & | value | ) |
Assign a value to Contact data member.
value | Reference to value. |
Definition at line 73 of file Submit_block_.cpp.
References CSubmit_block_Base::m_Contact, and rapidjson::value.
Referenced by CSequenceEditingEventHandler::CreateSeqSubmit(), CEditObjectSubmit_block::CreateWindow(), CDesktopViewContext::OnPasteSelection(), CFindASN1Dlg::ReplaceInSubmit(), and CAutogeneratedCleanup::x_BasicCleanupSeqSubmit_sub().
CContact_info_Base::TContact & CContact_info_Base::SetContact | ( | void | ) |
Assign a value to Contact data member.
Definition at line 139 of file Contact_info_.cpp.
References CContact_info_Base::m_Contact.
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Assign a value to Contact data member.
Definition at line 489 of file Submit_block_.hpp.
References CSubmit_block_Base::m_Contact, and CSubmit_block_Base::ResetContact().
void CSeq_submit_Base::SetData | ( | CSeq_submit_Base::TData & | value | ) |
Assign a value to Data data member.
value | Reference to value. |
Definition at line 164 of file Seq_submit_.cpp.
References CSeq_submit_Base::m_Data, CRef< C, Locker >::Reset(), and rapidjson::value.
Referenced by CReadBlastApp::AnalyzeSeqs(), CReadBlastApp::AnalyzeSeqsViaBioseqs(), CSubmissionWizard::ApplySubmitCommand(), CAutogeneratedCleanup::BasicCleanupSeqSubmit(), CNewCleanup_imp::BasicCleanupSeqSubmit(), BOOST_AUTO_TEST_CASE(), Convert_Seq_entry_SeqSubmit(), CSequenceEditingEventHandler::CreateSeqSubmit(), CTable2AsnContext::CreateSubmitFromTemplate(), CAutogeneratedExtendedCleanup::ExtendedCleanupSeqSubmit(), CNewCleanup_imp::ExtendedCleanupSeqSubmit(), seqsubmit_split::CSeqSubmitHelper::GetListOfEntries(), CMytestApplication::GetSeqEntry(), CSeqSetPresenter::GetSeqEntry(), CMultiReader::GetSeqEntry(), CTSE_Info::GetTopLevelSeq_submit(), MakeSeqSubmit(), CAsn2FastaApp::ObtainSeqEntryFromSeqSubmit(), CAgpConverter::OutputOneFileForEach(), subfuse::CSubmissionCollector::ProcessFile(), CAsnvalThreadState::ProcessSeqSubmit(), CReadBlastApp::RemoveProblems(), CReadBlastApp::Run(), CReadBlastApp::SortSeqs(), CRemoteUpdater::UpdatePubReferences(), CAgpconvertApplication::x_LoadTemplate(), CCleanupApp::x_ProcessHugeFileBlob(), CAnnotWriterApp::xProcessInputObject(), CMultiReader::xReadASN1Text(), and seqsubmit_split::CSeqSubSplitter::xTryProcessSeqSubmit().
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Assign a value to Data data member.
Definition at line 513 of file Seq_submit_.hpp.
References CSeq_submit_Base::m_Data, and CSeq_submit_Base::ResetData().
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Assign default value to Hup data member.
Definition at line 547 of file Submit_block_.hpp.
References CSubmit_block_Base::ResetHup().
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Select the variant.
Definition at line 455 of file Seq_submit_.hpp.
References eDoNotResetVariant.
Referenced by CAutogeneratedCleanup::x_BasicCleanupSeqSubmit_data().
Assign a value to Email data member.
value | Value to assign |
Definition at line 793 of file Contact_info_.hpp.
References CContact_info_Base::m_Email, CContact_info_Base::m_set_State, and rapidjson::value.
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Definition at line 800 of file Contact_info_.hpp.
References CContact_info_Base::m_Email, CContact_info_Base::m_set_State, and rapidjson::value.
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Assign a value to Email data member.
Definition at line 807 of file Contact_info_.hpp.
References CContact_info_Base::IsSetEmail(), CContact_info_Base::m_Email, CContact_info_Base::m_set_State, and CSerialObject::UnassignedString().
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Select the variant.
Definition at line 415 of file Seq_submit_.hpp.
References eDoNotResetVariant.
Referenced by CAutogeneratedCleanup::x_BasicCleanupSeqSubmit_data().
Assign a value to Fax data member.
value | Value to assign |
Definition at line 746 of file Contact_info_.hpp.
References CContact_info_Base::m_Fax, CContact_info_Base::m_set_State, and rapidjson::value.
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Definition at line 753 of file Contact_info_.hpp.
References CContact_info_Base::m_Fax, CContact_info_Base::m_set_State, and rapidjson::value.
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Assign a value to Fax data member.
Definition at line 760 of file Contact_info_.hpp.
References CContact_info_Base::IsSetFax(), CContact_info_Base::m_Fax, CContact_info_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to First_name data member.
value | Value to assign |
Definition at line 983 of file Contact_info_.hpp.
References CContact_info_Base::m_First_name, CContact_info_Base::m_set_State, and rapidjson::value.
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Definition at line 990 of file Contact_info_.hpp.
References CContact_info_Base::m_First_name, CContact_info_Base::m_set_State, and rapidjson::value.
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Assign a value to First_name data member.
Definition at line 997 of file Contact_info_.hpp.
References CContact_info_Base::IsSetFirst_name(), CContact_info_Base::m_First_name, CContact_info_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Hup data member.
value | Value to assign |
Definition at line 559 of file Submit_block_.hpp.
References CSubmit_block_Base::m_Hup, CSubmit_block_Base::m_set_State, and rapidjson::value.
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Assign a value to Hup data member.
Definition at line 566 of file Submit_block_.hpp.
References CSubmit_block_Base::IsSetHup(), CSubmit_block_Base::m_Hup, CSubmit_block_Base::m_set_State, and CSerialObject::UnassignedByte().
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Assign a value to Last_name data member.
value | Value to assign |
Definition at line 936 of file Contact_info_.hpp.
References CContact_info_Base::m_Last_name, CContact_info_Base::m_set_State, and rapidjson::value.
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Definition at line 943 of file Contact_info_.hpp.
References CContact_info_Base::m_Last_name, CContact_info_Base::m_set_State, and rapidjson::value.
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Assign a value to Last_name data member.
Definition at line 950 of file Contact_info_.hpp.
References CContact_info_Base::IsSetLast_name(), CContact_info_Base::m_Last_name, CContact_info_Base::m_set_State, and CSerialObject::UnassignedString().
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Assign a value to Middle_initial data member.
value | Value to assign |
Definition at line 1030 of file Contact_info_.hpp.
References CContact_info_Base::m_Middle_initial, CContact_info_Base::m_set_State, and rapidjson::value.
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Definition at line 1037 of file Contact_info_.hpp.
References CContact_info_Base::m_Middle_initial, CContact_info_Base::m_set_State, and rapidjson::value.
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Assign a value to Middle_initial data member.
Definition at line 1044 of file Contact_info_.hpp.
References CContact_info_Base::IsSetMiddle_initial(), CContact_info_Base::m_Middle_initial, CContact_info_Base::m_set_State, and CSerialObject::UnassignedString().
Assign a value to Name data member.
value | Value to assign |
Definition at line 627 of file Contact_info_.hpp.
References CContact_info_Base::m_Name, CContact_info_Base::m_set_State, and rapidjson::value.
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Definition at line 634 of file Contact_info_.hpp.
References CContact_info_Base::m_Name, CContact_info_Base::m_set_State, and rapidjson::value.
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inline |
Assign a value to Name data member.
Definition at line 641 of file Contact_info_.hpp.
References CContact_info_Base::IsSetName(), CContact_info_Base::m_Name, CContact_info_Base::m_set_State, and CSerialObject::UnassignedString().
void CContact_info_Base::SetOwner_id | ( | CContact_info_Base::TOwner_id & | value | ) |
Assign a value to Owner_id data member.
value | Reference to value. |
Definition at line 93 of file Contact_info_.cpp.
References CContact_info_Base::m_Owner_id, and rapidjson::value.
CContact_info_Base::TOwner_id & CContact_info_Base::SetOwner_id | ( | void | ) |
Assign a value to Owner_id data member.
Definition at line 98 of file Contact_info_.cpp.
References CContact_info_Base::m_Owner_id.
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Assign a value to Password data member.
Definition at line 908 of file Contact_info_.hpp.
References CContact_info_Base::m_Password, and CContact_info_Base::m_set_State.
Assign a value to Phone data member.
value | Value to assign |
Definition at line 699 of file Contact_info_.hpp.
References CContact_info_Base::m_Phone, CContact_info_Base::m_set_State, and rapidjson::value.
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Definition at line 706 of file Contact_info_.hpp.
References CContact_info_Base::m_Phone, CContact_info_Base::m_set_State, and rapidjson::value.
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Assign a value to Phone data member.
Definition at line 713 of file Contact_info_.hpp.
References CContact_info_Base::IsSetPhone(), CContact_info_Base::m_Phone, CContact_info_Base::m_set_State, and CSerialObject::UnassignedString().
void CSubmit_block_Base::SetReldate | ( | CSubmit_block_Base::TReldate & | value | ) |
Assign a value to Reldate data member.
value | Reference to value. |
Definition at line 97 of file Submit_block_.cpp.
References CSubmit_block_Base::m_Reldate, and rapidjson::value.
Referenced by CAutogeneratedCleanup::x_BasicCleanupSeqSubmit_sub().
CSubmit_block_Base::TReldate & CSubmit_block_Base::SetReldate | ( | void | ) |
Assign a value to Reldate data member.
Definition at line 102 of file Submit_block_.cpp.
References CSubmit_block_Base::m_Reldate.
void CSeq_submit_Base::SetSub | ( | CSeq_submit_Base::TSub & | value | ) |
Assign a value to Sub data member.
value | Reference to value. |
Definition at line 150 of file Seq_submit_.cpp.
References CSeq_submit_Base::m_Sub, and rapidjson::value.
Referenced by CSubmissionWizard::ApplySubmitCommand(), CAutogeneratedCleanup::BasicCleanupSeqSubmit(), BOOST_AUTO_TEST_CASE(), seqsubmit_split::CSeqSubmitHelper::BuildObject(), CSequenceEditingEventHandler::CreateSeqSubmit(), MakeGeneious(), MakeSeqSubmit(), CAgpConverter::OutputOneFileForEach(), CReadSubmitBlockHook::ReadClassMember(), CTSE_Info::SetTopLevelSubmit_block(), CTable2AsnContext::UpdateSubmitObject(), CAgpconvertApplication::x_LoadTemplate(), and CCleanupApp::x_ProcessHugeFileBlob().
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Assign a value to Sub data member.
Definition at line 483 of file Seq_submit_.hpp.
References CSeq_submit_Base::m_Sub, and CSeq_submit_Base::ResetSub().
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Assign a value to Subtype data member.
value | Value to assign |
Definition at line 627 of file Submit_block_.hpp.
References CSubmit_block_Base::m_set_State, CSubmit_block_Base::m_Subtype, and rapidjson::value.
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Assign a value to Subtype data member.
Definition at line 634 of file Submit_block_.hpp.
References CSubmit_block_Base::IsSetSubtype(), CSubmit_block_Base::m_set_State, CSubmit_block_Base::m_Subtype, and CSerialObject::UnassignedByte().
Assign a value to Telex data member.
value | Value to assign |
Definition at line 840 of file Contact_info_.hpp.
References CContact_info_Base::m_set_State, CContact_info_Base::m_Telex, and rapidjson::value.
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Definition at line 847 of file Contact_info_.hpp.
References CContact_info_Base::m_set_State, CContact_info_Base::m_Telex, and rapidjson::value.
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Assign a value to Telex data member.
Definition at line 854 of file Contact_info_.hpp.
References CContact_info_Base::IsSetTelex(), CContact_info_Base::m_set_State, CContact_info_Base::m_Telex, and CSerialObject::UnassignedString().
Assign a value to Tool data member.
value | Value to assign |
Definition at line 667 of file Submit_block_.hpp.
References CSubmit_block_Base::m_set_State, CSubmit_block_Base::m_Tool, and rapidjson::value.
Referenced by CSequenceEditingEventHandler::CreateSeqSubmit(), and CFindASN1Dlg::ReplaceInSubmit().
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Definition at line 674 of file Submit_block_.hpp.
References CSubmit_block_Base::m_set_State, CSubmit_block_Base::m_Tool, and rapidjson::value.
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Assign a value to Tool data member.
Definition at line 681 of file Submit_block_.hpp.
References CSubmit_block_Base::IsSetTool(), CSubmit_block_Base::m_set_State, CSubmit_block_Base::m_Tool, and CSerialObject::UnassignedString().
Assign a value to User_tag data member.
value | Value to assign |
Definition at line 714 of file Submit_block_.hpp.
References CSubmit_block_Base::m_set_State, CSubmit_block_Base::m_User_tag, and rapidjson::value.
Referenced by CFindASN1Dlg::ReplaceInSubmit().
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Definition at line 721 of file Submit_block_.hpp.
References CSubmit_block_Base::m_set_State, CSubmit_block_Base::m_User_tag, and rapidjson::value.
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Assign a value to User_tag data member.
Definition at line 728 of file Submit_block_.hpp.
References CSubmit_block_Base::IsSetUser_tag(), CSubmit_block_Base::m_set_State, CSubmit_block_Base::m_User_tag, and CSerialObject::UnassignedString().
void CSeq_submit_Base::C_Data::ThrowInvalidSelection | ( | E_Choice | index | ) | const |
Throw 'InvalidSelection' exception.
index | Expected selection. |
Definition at line 108 of file Seq_submit_.cpp.
References DIAG_COMPILE_INFO.
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Which variant is currently selected.
Definition at line 373 of file Seq_submit_.hpp.
References CSeq_submit_Base::C_Data::m_choice.
Referenced by CAttachedHandles::Attach(), CTSE_Info::GetTopLevelSeq_submit(), CValidError_imp::Validate(), CAutogeneratedCleanup::x_BasicCleanupSeqSubmit_data(), and CScope_Impl::x_MakeDummyTSE().
CSeq_submit_Base::C_Data::~C_Data | ( | void | ) |
Definition at line 135 of file Seq_submit_.cpp.
References CSeq_submit_Base::Reset().
CContact_info::~CContact_info | ( | void | ) |
Definition at line 50 of file Contact_info.cpp.
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Definition at line 190 of file Contact_info_.cpp.
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Definition at line 197 of file Seq_submit_.cpp.
CSubmit_block::~CSubmit_block | ( | void | ) |
Definition at line 50 of file Submit_block.cpp.
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Definition at line 168 of file Submit_block_.cpp.
union { ... } |
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Definition at line 583 of file Contact_info_.hpp.
Referenced by CContact_info_Base::GetAddress(), CContact_info_Base::ResetAddress(), and CContact_info_Base::SetAddress().
NCBI_NS_NCBI::CUnionBuffer<TAnnots> CSeq_submit_Base::C_Data::m_Annots |
Definition at line 254 of file Seq_submit_.hpp.
NCBI_NS_NCBI::CUnionBuffer<TAnnots> { ... } ::m_Annots |
Definition at line 254 of file Seq_submit_.hpp.
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Definition at line 246 of file Seq_submit_.hpp.
Referenced by CSeq_submit_Base::C_Data::Reset(), and CSeq_submit_Base::C_Data::Which().
Definition at line 449 of file Submit_block_.hpp.
Referenced by CSubmit_block_Base::GetCit(), CSubmit_block_Base::IsSetCit(), CSubmit_block_Base::ResetCit(), and CSubmit_block_Base::SetCit().
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Definition at line 455 of file Submit_block_.hpp.
Referenced by CSubmit_block_Base::GetComment(), CSubmit_block_Base::ResetComment(), and CSubmit_block_Base::SetComment().
Definition at line 593 of file Contact_info_.hpp.
Referenced by CContact_info_Base::GetContact(), CContact_info_Base::IsSetContact(), CContact_info_Base::ResetContact(), and CContact_info_Base::SetContact().
Definition at line 448 of file Submit_block_.hpp.
Referenced by CSubmit_block_Base::GetContact(), CSubmit_block_Base::IsSetContact(), CSubmit_block_Base::ResetContact(), and CSubmit_block_Base::SetContact().
Definition at line 360 of file Seq_submit_.hpp.
Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CSeq_submit_Base::GetData(), CSeq_submit_Base::IsSetData(), CSeq_submit_Base::ResetData(), and CSeq_submit_Base::SetData().
NCBI_NS_NCBI::CUnionBuffer<TDelete> CSeq_submit_Base::C_Data::m_Delete |
Definition at line 255 of file Seq_submit_.hpp.
NCBI_NS_NCBI::CUnionBuffer<TDelete> { ... } ::m_Delete |
Definition at line 255 of file Seq_submit_.hpp.
void* CSeq_submit_Base::C_Data::m_dummy_pointer_for_alignment |
Definition at line 256 of file Seq_submit_.hpp.
void* { ... } ::m_dummy_pointer_for_alignment |
Definition at line 256 of file Seq_submit_.hpp.
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Definition at line 586 of file Contact_info_.hpp.
Referenced by CContact_info_Base::GetEmail(), CContact_info_Base::ResetEmail(), and CContact_info_Base::SetEmail().
NCBI_NS_NCBI::CUnionBuffer<TEntrys> CSeq_submit_Base::C_Data::m_Entrys |
Definition at line 253 of file Seq_submit_.hpp.
NCBI_NS_NCBI::CUnionBuffer<TEntrys> { ... } ::m_Entrys |
Definition at line 253 of file Seq_submit_.hpp.
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Definition at line 585 of file Contact_info_.hpp.
Referenced by CContact_info_Base::GetFax(), CContact_info_Base::ResetFax(), and CContact_info_Base::SetFax().
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Definition at line 591 of file Contact_info_.hpp.
Referenced by CContact_info_Base::GetFirst_name(), CContact_info_Base::ResetFirst_name(), and CContact_info_Base::SetFirst_name().
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Definition at line 450 of file Submit_block_.hpp.
Referenced by CSubmit_block_Base::GetHup(), CSubmit_block_Base::ResetHup(), and CSubmit_block_Base::SetHup().
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Definition at line 590 of file Contact_info_.hpp.
Referenced by CContact_info_Base::GetLast_name(), CContact_info_Base::ResetLast_name(), and CContact_info_Base::SetLast_name().
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Definition at line 592 of file Contact_info_.hpp.
Referenced by CContact_info_Base::GetMiddle_initial(), CContact_info_Base::ResetMiddle_initial(), and CContact_info_Base::SetMiddle_initial().
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Definition at line 582 of file Contact_info_.hpp.
Referenced by CContact_info_Base::GetName(), CContact_info_Base::ResetName(), and CContact_info_Base::SetName().
Definition at line 588 of file Contact_info_.hpp.
Referenced by CContact_info_Base::GetOwner_id(), CContact_info_Base::IsSetOwner_id(), CContact_info_Base::ResetOwner_id(), and CContact_info_Base::SetOwner_id().
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Definition at line 589 of file Contact_info_.hpp.
Referenced by CContact_info_Base::GetPassword(), CContact_info_Base::ResetPassword(), and CContact_info_Base::SetPassword().
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Definition at line 584 of file Contact_info_.hpp.
Referenced by CContact_info_Base::GetPhone(), CContact_info_Base::ResetPhone(), and CContact_info_Base::SetPhone().
Definition at line 451 of file Submit_block_.hpp.
Referenced by CSubmit_block_Base::GetReldate(), CSubmit_block_Base::IsSetReldate(), CSubmit_block_Base::ResetReldate(), and CSubmit_block_Base::SetReldate().
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Definition at line 581 of file Contact_info_.hpp.
Referenced by CContact_info_Base::CContact_info_Base(), CContact_info_Base::IsSetAddress(), CContact_info_Base::IsSetEmail(), CContact_info_Base::IsSetFax(), CContact_info_Base::IsSetFirst_name(), CContact_info_Base::IsSetLast_name(), CContact_info_Base::IsSetMiddle_initial(), CContact_info_Base::IsSetName(), CContact_info_Base::IsSetPassword(), CContact_info_Base::IsSetPhone(), CContact_info_Base::IsSetTelex(), CContact_info_Base::ResetAddress(), CContact_info_Base::ResetEmail(), CContact_info_Base::ResetFax(), CContact_info_Base::ResetFirst_name(), CContact_info_Base::ResetLast_name(), CContact_info_Base::ResetMiddle_initial(), CContact_info_Base::ResetName(), CContact_info_Base::ResetPassword(), CContact_info_Base::ResetPhone(), CContact_info_Base::ResetTelex(), CContact_info_Base::SetAddress(), CContact_info_Base::SetEmail(), CContact_info_Base::SetFax(), CContact_info_Base::SetFirst_name(), CContact_info_Base::SetLast_name(), CContact_info_Base::SetMiddle_initial(), CContact_info_Base::SetName(), CContact_info_Base::SetPassword(), CContact_info_Base::SetPhone(), and CContact_info_Base::SetTelex().
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Definition at line 358 of file Seq_submit_.hpp.
Referenced by CSeq_submit_Base::CSeq_submit_Base().
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Definition at line 447 of file Submit_block_.hpp.
Referenced by CSubmit_block_Base::CSubmit_block_Base(), CSubmit_block_Base::IsSetComment(), CSubmit_block_Base::IsSetHup(), CSubmit_block_Base::IsSetSubtype(), CSubmit_block_Base::IsSetTool(), CSubmit_block_Base::IsSetUser_tag(), CSubmit_block_Base::ResetComment(), CSubmit_block_Base::ResetHup(), CSubmit_block_Base::ResetSubtype(), CSubmit_block_Base::ResetTool(), CSubmit_block_Base::ResetUser_tag(), CSubmit_block_Base::SetComment(), CSubmit_block_Base::SetHup(), CSubmit_block_Base::SetSubtype(), CSubmit_block_Base::SetTool(), and CSubmit_block_Base::SetUser_tag().
Definition at line 359 of file Seq_submit_.hpp.
Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CSeq_submit_Base::GetSub(), CSeq_submit_Base::IsSetSub(), CSeq_submit_Base::ResetSub(), and CSeq_submit_Base::SetSub().
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Definition at line 452 of file Submit_block_.hpp.
Referenced by CSubmit_block_Base::GetSubtype(), CSubmit_block_Base::ResetSubtype(), and CSubmit_block_Base::SetSubtype().
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Definition at line 587 of file Contact_info_.hpp.
Referenced by CContact_info_Base::GetTelex(), CContact_info_Base::ResetTelex(), and CContact_info_Base::SetTelex().
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Definition at line 453 of file Submit_block_.hpp.
Referenced by CSubmit_block_Base::GetTool(), CSubmit_block_Base::ResetTool(), and CSubmit_block_Base::SetTool().
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Definition at line 454 of file Submit_block_.hpp.
Referenced by CSubmit_block_Base::GetUser_tag(), CSubmit_block_Base::ResetUser_tag(), and CSubmit_block_Base::SetUser_tag().
Definition at line 250 of file Seq_submit_.hpp.