NCBI C++ ToolKit
Classes | Typedefs | Enumerations | Enumerator | Functions | Variables
Code generated by DATATOOL from 'seqfeat.asn' (module 'NCBI-Variation')
+ Collaboration diagram for Code generated by DATATOOL from 'seqfeat.asn' (module 'NCBI-Variation'):

Classes

class  CDelta_item_Base
 CDelta_item_Base –. More...
 
class  CDelta_item_Base::C_Seq
 C_Seq –. More...
 
class  CExt_loc
 CExt_loc –. More...
 
class  CExt_loc_Base
 CExt_loc_Base –. More...
 
class  CPhenotype
 CPhenotype –. More...
 
class  CPhenotype_Base
 CPhenotype_Base –. More...
 
class  CPopulation_data
 CPopulation_data –. More...
 
class  CPopulation_data_Base
 CPopulation_data_Base –. More...
 
class  CVariantProperties_Base
 Historically, the dbSNP definitions document data structures used in the processing and annotation of variations by the dbSNP group. More...
 
class  CVariation_inst
 CVariation_inst –. More...
 
class  CVariation_inst_Base
 Variation instance. More...
 
class  CVariation_ref_Base
 CVariation_ref_Base –. More...
 
class  CVariation_ref_Base::C_Data
 C_Data –. More...
 
class  CVariation_ref_Base::C_Data::C_Set
 Set of related Variations. More...
 
class  CVariation_ref_Base::C_E_Consequence
 C_E_Consequence –. More...
 
class  CVariation_ref_Base::C_E_Consequence::C_Frameshift
 see http://www.hgvs.org/mutnomen/recs-prot.html More...
 
class  CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity
 C_Loss_of_heterozygosity –. More...
 
class  CVariation_ref_Base::C_E_Somatic_origin
 C_E_Somatic_origin –. More...
 
class  CVariation_ref_Base::C_E_Somatic_origin::C_Condition
 condition related to this origin's type More...
 

Typedefs

typedef CSerialObject CDelta_item_Base::Tparent
 
typedef CSerialObject CDelta_item_Base::C_Seq::Tparent
 
typedef CSeq_literal CDelta_item_Base::C_Seq::TLiteral
 
typedef CSeq_loc CDelta_item_Base::C_Seq::TLoc
 
typedef C_Seq CDelta_item_Base::TSeq
 
typedef int CDelta_item_Base::TMultiplier
 
typedef CInt_fuzz CDelta_item_Base::TMultiplier_fuzz
 
typedef int CDelta_item_Base::TAction
 
typedef Tparent::CMemberIndex< E_memberIndex, 5 > CDelta_item_Base::TmemberIndex
 
typedef CExt_loc_Base CExt_loc::Tparent
 
typedef CSerialObject CExt_loc_Base::Tparent
 
typedef CObject_id CExt_loc_Base::TId
 
typedef CSeq_loc CExt_loc_Base::TLocation
 
typedef Tparent::CMemberIndex< E_memberIndex, 3 > CExt_loc_Base::TmemberIndex
 
typedef CPhenotype_Base CPhenotype::Tparent
 
typedef CSerialObject CPhenotype_Base::Tparent
 
typedef string CPhenotype_Base::TSource
 
typedef string CPhenotype_Base::TTerm
 
typedef list< CRef< CDbtag > > CPhenotype_Base::TXref
 
typedef int CPhenotype_Base::TClinical_significance
 
typedef Tparent::CMemberIndex< E_memberIndex, 5 > CPhenotype_Base::TmemberIndex
 
typedef CPopulation_data_Base CPopulation_data::Tparent
 
typedef CSerialObject CPopulation_data_Base::Tparent
 
typedef string CPopulation_data_Base::TPopulation
 
typedef double CPopulation_data_Base::TGenotype_frequency
 
typedef int CPopulation_data_Base::TChromosomes_tested
 
typedef list< CRef< CObject_id > > CPopulation_data_Base::TSample_ids
 
typedef double CPopulation_data_Base::TAllele_frequency
 
typedef int CPopulation_data_Base::TFlags
 
typedef Tparent::CMemberIndex< E_memberIndex, 7 > CPopulation_data_Base::TmemberIndex
 
typedef CSerialObject CVariantProperties_Base::Tparent
 
typedef int CVariantProperties_Base::TVersion
 
typedef int CVariantProperties_Base::TResource_link
 
typedef int CVariantProperties_Base::TGene_location
 
typedef int CVariantProperties_Base::TEffect
 
typedef int CVariantProperties_Base::TMapping
 
typedef int CVariantProperties_Base::TMap_weight
 
typedef int CVariantProperties_Base::TFrequency_based_validation
 
typedef int CVariantProperties_Base::TGenotype
 
typedef list< intCVariantProperties_Base::TProject_data
 
typedef int CVariantProperties_Base::TQuality_check
 
typedef int CVariantProperties_Base::TConfidence
 
typedef bool CVariantProperties_Base::TOther_validation
 
typedef int CVariantProperties_Base::TAllele_origin
 
typedef int CVariantProperties_Base::TAllele_state
 
typedef double CVariantProperties_Base::TAllele_frequency
 
typedef bool CVariantProperties_Base::TIs_ancestral_allele
 
typedef Tparent::CMemberIndex< E_memberIndex, 17 > CVariantProperties_Base::TmemberIndex
 
typedef CVariation_inst_Base CVariation_inst::Tparent
 
typedef CSerialObject CVariation_inst_Base::Tparent
 
typedef int CVariation_inst_Base::TType
 
typedef list< CRef< CDelta_item > > CVariation_inst_Base::TDelta
 
typedef int CVariation_inst_Base::TObservation
 
typedef Tparent::CMemberIndex< E_memberIndex, 4 > CVariation_inst_Base::TmemberIndex
 
typedef CSerialObject CVariation_ref_Base::Tparent
 
typedef CSerialObject CVariation_ref_Base::C_Data::Tparent
 
typedef CSerialObject CVariation_ref_Base::C_Data::C_Set::Tparent
 
typedef int CVariation_ref_Base::C_Data::C_Set::TType
 
typedef list< CRef< CVariation_ref > > CVariation_ref_Base::C_Data::C_Set::TVariations
 
typedef string CVariation_ref_Base::C_Data::C_Set::TName
 
typedef Tparent::CMemberIndex< E_memberIndex, 4 > CVariation_ref_Base::C_Data::C_Set::TmemberIndex
 
typedef string CVariation_ref_Base::C_Data::TNote
 
typedef CVariation_inst CVariation_ref_Base::C_Data::TInstance
 
typedef C_Set CVariation_ref_Base::C_Data::TSet
 
typedef CSerialObject CVariation_ref_Base::C_E_Consequence::Tparent
 
typedef CSerialObject CVariation_ref_Base::C_E_Consequence::C_Frameshift::Tparent
 
typedef int CVariation_ref_Base::C_E_Consequence::C_Frameshift::TPhase
 
typedef int CVariation_ref_Base::C_E_Consequence::C_Frameshift::TX_length
 
typedef Tparent::CMemberIndex< E_memberIndex, 3 > CVariation_ref_Base::C_E_Consequence::C_Frameshift::TmemberIndex
 
typedef CSerialObject CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::Tparent
 
typedef string CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::TReference
 
typedef string CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::TTest
 
typedef Tparent::CMemberIndex< E_memberIndex, 3 > CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::TmemberIndex
 
typedef string CVariation_ref_Base::C_E_Consequence::TNote
 
typedef CVariation_ref CVariation_ref_Base::C_E_Consequence::TVariation
 
typedef C_Frameshift CVariation_ref_Base::C_E_Consequence::TFrameshift
 
typedef C_Loss_of_heterozygosity CVariation_ref_Base::C_E_Consequence::TLoss_of_heterozygosity
 
typedef CSerialObject CVariation_ref_Base::C_E_Somatic_origin::Tparent
 
typedef CSerialObject CVariation_ref_Base::C_E_Somatic_origin::C_Condition::Tparent
 
typedef string CVariation_ref_Base::C_E_Somatic_origin::C_Condition::TDescription
 
typedef list< CRef< CDbtag > > CVariation_ref_Base::C_E_Somatic_origin::C_Condition::TObject_id
 
typedef Tparent::CMemberIndex< E_memberIndex, 3 > CVariation_ref_Base::C_E_Somatic_origin::C_Condition::TmemberIndex
 
typedef CSubSource CVariation_ref_Base::C_E_Somatic_origin::TSource
 
typedef C_Condition CVariation_ref_Base::C_E_Somatic_origin::TCondition
 
typedef Tparent::CMemberIndex< E_memberIndex, 3 > CVariation_ref_Base::C_E_Somatic_origin::TmemberIndex
 
typedef CDbtag CVariation_ref_Base::TId
 
typedef CDbtag CVariation_ref_Base::TParent_id
 
typedef CObject_id CVariation_ref_Base::TSample_id
 
typedef list< CRef< CDbtag > > CVariation_ref_Base::TOther_ids
 
typedef string CVariation_ref_Base::TName
 
typedef list< stringCVariation_ref_Base::TSynonyms
 
typedef string CVariation_ref_Base::TDescription
 
typedef list< CRef< CPhenotype > > CVariation_ref_Base::TPhenotype
 
typedef list< intCVariation_ref_Base::TMethod
 
typedef list< CRef< CPopulation_data > > CVariation_ref_Base::TPopulation_data
 
typedef CVariantProperties CVariation_ref_Base::TVariant_prop
 
typedef bool CVariation_ref_Base::TValidated
 
typedef list< CRef< CDbtag > > CVariation_ref_Base::TClinical_test
 
typedef int CVariation_ref_Base::TAllele_origin
 
typedef int CVariation_ref_Base::TAllele_state
 
typedef double CVariation_ref_Base::TAllele_frequency
 
typedef bool CVariation_ref_Base::TIs_ancestral_allele
 
typedef CPub CVariation_ref_Base::TPub
 
typedef C_Data CVariation_ref_Base::TData
 
typedef C_E_Consequence CVariation_ref_Base::C_E
 
typedef list< CRef< C_E_Consequence > > CVariation_ref_Base::TConsequence
 
typedef CSeq_loc CVariation_ref_Base::TLocation
 
typedef list< CRef< CExt_loc > > CVariation_ref_Base::TExt_locs
 
typedef CUser_object CVariation_ref_Base::TExt
 
typedef list< CRef< C_E_Somatic_origin > > CVariation_ref_Base::TSomatic_origin
 
typedef Tparent::CMemberIndex< E_memberIndex, 25 > CVariation_ref_Base::TmemberIndex
 

Enumerations

enum  CDelta_item_Base::C_Seq::E_Choice { CDelta_item_Base::C_Seq::e_not_set = 0 , CDelta_item_Base::C_Seq::e_Literal , CDelta_item_Base::C_Seq::e_Loc , CDelta_item_Base::C_Seq::e_This }
 Choice variants. More...
 
enum  CDelta_item_Base::C_Seq::E_ChoiceStopper { CDelta_item_Base::C_Seq::e_MaxChoice = 4 }
 Maximum+1 value of the choice variant enumerator. More...
 
enum  CDelta_item_Base::EAction { CDelta_item_Base::eAction_morph = 0 , CDelta_item_Base::eAction_offset = 1 , CDelta_item_Base::eAction_del_at = 2 , CDelta_item_Base::eAction_ins_before = 3 }
 
enum class  CDelta_item_Base::E_memberIndex {
  CDelta_item_Base::e__allMandatory = 0 , CDelta_item_Base::e_seq , CDelta_item_Base::e_multiplier , CDelta_item_Base::e_multiplier_fuzz ,
  CDelta_item_Base::e_action
}
 
enum class  CExt_loc_Base::E_memberIndex { CExt_loc_Base::e__allMandatory = 0 , CExt_loc_Base::e_id , CExt_loc_Base::e_location }
 
enum  CPhenotype_Base::EClinical_significance {
  CPhenotype_Base::eClinical_significance_unknown = 0 , CPhenotype_Base::eClinical_significance_untested = 1 , CPhenotype_Base::eClinical_significance_non_pathogenic = 2 , CPhenotype_Base::eClinical_significance_probable_non_pathogenic = 3 ,
  CPhenotype_Base::eClinical_significance_probable_pathogenic = 4 , CPhenotype_Base::eClinical_significance_pathogenic = 5 , CPhenotype_Base::eClinical_significance_drug_response = 6 , CPhenotype_Base::eClinical_significance_histocompatibility = 7 ,
  CPhenotype_Base::eClinical_significance_other = 255
}
 does this variant have known clinical significance? More...
 
enum class  CPhenotype_Base::E_memberIndex {
  CPhenotype_Base::e__allMandatory = 0 , CPhenotype_Base::e_source , CPhenotype_Base::e_term , CPhenotype_Base::e_xref ,
  CPhenotype_Base::e_clinical_significance
}
 
enum  CPopulation_data_Base::EFlags { CPopulation_data_Base::eFlags_is_default_population = 1 , CPopulation_data_Base::eFlags_is_minor_allele = 2 , CPopulation_data_Base::eFlags_is_rare_allele = 4 }
 This field is an explicit bit-field Valid values should be a bitwise combination (= simple sum) of any of the values below. More...
 
enum class  CPopulation_data_Base::E_memberIndex {
  CPopulation_data_Base::e__allMandatory = 0 , CPopulation_data_Base::e_population , CPopulation_data_Base::e_genotype_frequency , CPopulation_data_Base::e_chromosomes_tested ,
  CPopulation_data_Base::e_sample_ids , CPopulation_data_Base::e_allele_frequency , CPopulation_data_Base::e_flags
}
 
enum  CVariantProperties_Base::EResource_link {
  CVariantProperties_Base::eResource_link_preserved = 1 , CVariantProperties_Base::eResource_link_provisional = 2 , CVariantProperties_Base::eResource_link_has3D = 4 , CVariantProperties_Base::eResource_link_submitterLinkout = 8 ,
  CVariantProperties_Base::eResource_link_clinical = 16 , CVariantProperties_Base::eResource_link_genotypeKit = 32
}
 NOTE: The format for most of these values is as an integer Unless otherwise noted, these integers represent a bitwise OR (= simple sum) of the possible values, and as such, these values represent the specific bit flags that may be set for each of the possible attributes here. More...
 
enum  CVariantProperties_Base::EGene_location {
  CVariantProperties_Base::eGene_location_in_gene = 1 , CVariantProperties_Base::eGene_location_near_gene_5 = 2 , CVariantProperties_Base::eGene_location_near_gene_3 = 4 , CVariantProperties_Base::eGene_location_intron = 8 ,
  CVariantProperties_Base::eGene_location_donor = 16 , CVariantProperties_Base::eGene_location_acceptor = 32 , CVariantProperties_Base::eGene_location_utr_5 = 64 , CVariantProperties_Base::eGene_location_utr_3 = 128 ,
  CVariantProperties_Base::eGene_location_in_start_codon = 256 , CVariantProperties_Base::eGene_location_in_stop_codon = 512 , CVariantProperties_Base::eGene_location_intergenic = 1024 , CVariantProperties_Base::eGene_location_conserved_noncoding = 2048
}
 
enum  CVariantProperties_Base::EEffect {
  CVariantProperties_Base::eEffect_no_change = 0 , CVariantProperties_Base::eEffect_synonymous = 1 , CVariantProperties_Base::eEffect_nonsense = 2 , CVariantProperties_Base::eEffect_missense = 4 ,
  CVariantProperties_Base::eEffect_frameshift = 8 , CVariantProperties_Base::eEffect_up_regulator = 16 , CVariantProperties_Base::eEffect_down_regulator = 32 , CVariantProperties_Base::eEffect_methylation = 64 ,
  CVariantProperties_Base::eEffect_stop_gain = 128 , CVariantProperties_Base::eEffect_stop_loss = 256
}
 
enum  CVariantProperties_Base::EMapping { CVariantProperties_Base::eMapping_has_other_snp = 1 , CVariantProperties_Base::eMapping_has_assembly_conflict = 2 , CVariantProperties_Base::eMapping_is_assembly_specific = 4 }
 
enum  CVariantProperties_Base::EMap_weight { CVariantProperties_Base::eMap_weight_is_uniquely_placed = 1 , CVariantProperties_Base::eMap_weight_placed_twice_on_same_chrom = 2 , CVariantProperties_Base::eMap_weight_placed_twice_on_diff_chrom = 3 , CVariantProperties_Base::eMap_weight_many_placements = 10 }
 map-weight captures specificity of placement NOTE: This is *NOT* a bitfield More...
 
enum  CVariantProperties_Base::EFrequency_based_validation {
  CVariantProperties_Base::eFrequency_based_validation_is_mutation = 1 , CVariantProperties_Base::eFrequency_based_validation_above_5pct_all = 2 , CVariantProperties_Base::eFrequency_based_validation_above_5pct_1plus = 4 , CVariantProperties_Base::eFrequency_based_validation_validated = 8 ,
  CVariantProperties_Base::eFrequency_based_validation_above_1pct_all = 16 , CVariantProperties_Base::eFrequency_based_validation_above_1pct_1plus = 32
}
 
enum  CVariantProperties_Base::EGenotype { CVariantProperties_Base::eGenotype_in_haplotype_set = 1 , CVariantProperties_Base::eGenotype_has_genotypes = 2 }
 
enum  CVariantProperties_Base::EQuality_check {
  CVariantProperties_Base::eQuality_check_contig_allele_missing = 1 , CVariantProperties_Base::eQuality_check_withdrawn_by_submitter = 2 , CVariantProperties_Base::eQuality_check_non_overlapping_alleles = 4 , CVariantProperties_Base::eQuality_check_strain_specific = 8 ,
  CVariantProperties_Base::eQuality_check_genotype_conflict = 16
}
 
enum  CVariantProperties_Base::EConfidence { CVariantProperties_Base::eConfidence_unknown = 0 , CVariantProperties_Base::eConfidence_likely_artifact = 1 , CVariantProperties_Base::eConfidence_other = 255 }
 
enum  CVariantProperties_Base::EAllele_origin {
  CVariantProperties_Base::eAllele_origin_unknown = 0 , CVariantProperties_Base::eAllele_origin_germline = 1 , CVariantProperties_Base::eAllele_origin_somatic = 2 , CVariantProperties_Base::eAllele_origin_inherited = 4 ,
  CVariantProperties_Base::eAllele_origin_paternal = 8 , CVariantProperties_Base::eAllele_origin_maternal = 16 , CVariantProperties_Base::eAllele_origin_de_novo = 32 , CVariantProperties_Base::eAllele_origin_biparental = 64 ,
  CVariantProperties_Base::eAllele_origin_uniparental = 128 , CVariantProperties_Base::eAllele_origin_not_tested = 256 , CVariantProperties_Base::eAllele_origin_tested_inconclusive = 512 , CVariantProperties_Base::eAllele_origin_not_reported = 1024 ,
  CVariantProperties_Base::eAllele_origin_other = 1073741824
}
 origin of this allele, if known note that these are powers-of-two, and represent bits; thus, we can represent more than one state simultaneously through a bitwise OR More...
 
enum  CVariantProperties_Base::EAllele_state {
  CVariantProperties_Base::eAllele_state_unknown = 0 , CVariantProperties_Base::eAllele_state_homozygous = 1 , CVariantProperties_Base::eAllele_state_heterozygous = 2 , CVariantProperties_Base::eAllele_state_hemizygous = 3 ,
  CVariantProperties_Base::eAllele_state_nullizygous = 4 , CVariantProperties_Base::eAllele_state_other = 255
}
 observed allele state, if known NOTE: THIS IS NOT A BITFIELD! More...
 
enum class  CVariantProperties_Base::E_memberIndex {
  CVariantProperties_Base::e__allMandatory = 0 , CVariantProperties_Base::e_version , CVariantProperties_Base::e_resource_link , CVariantProperties_Base::e_gene_location ,
  CVariantProperties_Base::e_effect , CVariantProperties_Base::e_mapping , CVariantProperties_Base::e_map_weight , CVariantProperties_Base::e_frequency_based_validation ,
  CVariantProperties_Base::e_genotype , CVariantProperties_Base::e_project_data , CVariantProperties_Base::e_quality_check , CVariantProperties_Base::e_confidence ,
  CVariantProperties_Base::e_other_validation , CVariantProperties_Base::e_allele_origin , CVariantProperties_Base::e_allele_state , CVariantProperties_Base::e_allele_frequency ,
  CVariantProperties_Base::e_is_ancestral_allele
}
 
enum  CVariation_inst_Base::EType {
  CVariation_inst_Base::eType_unknown = 0 , CVariation_inst_Base::eType_identity = 1 , CVariation_inst_Base::eType_inv = 2 , CVariation_inst_Base::eType_snv = 3 ,
  CVariation_inst_Base::eType_mnp = 4 , CVariation_inst_Base::eType_delins = 5 , CVariation_inst_Base::eType_del = 6 , CVariation_inst_Base::eType_ins = 7 ,
  CVariation_inst_Base::eType_microsatellite = 8 , CVariation_inst_Base::eType_transposon = 9 , CVariation_inst_Base::eType_cnv = 10 , CVariation_inst_Base::eType_direct_copy = 11 ,
  CVariation_inst_Base::eType_rev_direct_copy = 12 , CVariation_inst_Base::eType_inverted_copy = 13 , CVariation_inst_Base::eType_everted_copy = 14 , CVariation_inst_Base::eType_translocation = 15 ,
  CVariation_inst_Base::eType_prot_missense = 16 , CVariation_inst_Base::eType_prot_nonsense = 17 , CVariation_inst_Base::eType_prot_neutral = 18 , CVariation_inst_Base::eType_prot_silent = 19 ,
  CVariation_inst_Base::eType_prot_other = 20 , CVariation_inst_Base::eType_other = 255
}
 
enum  CVariation_inst_Base::EObservation { CVariation_inst_Base::eObservation_asserted = 1 , CVariation_inst_Base::eObservation_reference = 2 , CVariation_inst_Base::eObservation_variant = 4 }
 'observation' is used to label items in a Variation-ref package This field is explicitly a bit-field, so the bitwise OR (= sum) of any of the values may be observed. More...
 
enum class  CVariation_inst_Base::E_memberIndex { CVariation_inst_Base::e__allMandatory = 0 , CVariation_inst_Base::e_type , CVariation_inst_Base::e_delta , CVariation_inst_Base::e_observation }
 
enum  CVariation_ref_Base::EMethod_E {
  CVariation_ref_Base::eMethod_E_unknown = 0 , CVariation_ref_Base::eMethod_E_bac_acgh = 1 , CVariation_ref_Base::eMethod_E_computational = 2 , CVariation_ref_Base::eMethod_E_curated = 3 ,
  CVariation_ref_Base::eMethod_E_digital_array = 4 , CVariation_ref_Base::eMethod_E_expression_array = 5 , CVariation_ref_Base::eMethod_E_fish = 6 , CVariation_ref_Base::eMethod_E_flanking_sequence = 7 ,
  CVariation_ref_Base::eMethod_E_maph = 8 , CVariation_ref_Base::eMethod_E_mcd_analysis = 9 , CVariation_ref_Base::eMethod_E_mlpa = 10 , CVariation_ref_Base::eMethod_E_oea_assembly = 11 ,
  CVariation_ref_Base::eMethod_E_oligo_acgh = 12 , CVariation_ref_Base::eMethod_E_paired_end = 13 , CVariation_ref_Base::eMethod_E_pcr = 14 , CVariation_ref_Base::eMethod_E_qpcr = 15 ,
  CVariation_ref_Base::eMethod_E_read_depth = 16 , CVariation_ref_Base::eMethod_E_roma = 17 , CVariation_ref_Base::eMethod_E_rt_pcr = 18 , CVariation_ref_Base::eMethod_E_sage = 19 ,
  CVariation_ref_Base::eMethod_E_sequence_alignment = 20 , CVariation_ref_Base::eMethod_E_sequencing = 21 , CVariation_ref_Base::eMethod_E_snp_array = 22 , CVariation_ref_Base::eMethod_E_snp_genoytyping = 23 ,
  CVariation_ref_Base::eMethod_E_southern = 24 , CVariation_ref_Base::eMethod_E_western = 25 , CVariation_ref_Base::eMethod_E_optical_mapping = 26 , CVariation_ref_Base::eMethod_E_other = 255
}
 
enum  CVariation_ref_Base::EAllele_origin {
  CVariation_ref_Base::eAllele_origin_unknown = 0 , CVariation_ref_Base::eAllele_origin_germline = 1 , CVariation_ref_Base::eAllele_origin_somatic = 2 , CVariation_ref_Base::eAllele_origin_inherited = 4 ,
  CVariation_ref_Base::eAllele_origin_paternal = 8 , CVariation_ref_Base::eAllele_origin_maternal = 16 , CVariation_ref_Base::eAllele_origin_de_novo = 32 , CVariation_ref_Base::eAllele_origin_biparental = 64 ,
  CVariation_ref_Base::eAllele_origin_uniparental = 128 , CVariation_ref_Base::eAllele_origin_not_tested = 256 , CVariation_ref_Base::eAllele_origin_tested_inconclusive = 512 , CVariation_ref_Base::eAllele_origin_other = 1073741824
}
 origin of this allele, if known note that these are powers-of-two, and represent bits; thus, we can represent more than one state simultaneously through a bitwise OR DEPRECATED: new field = VariantProperties.allele-origin More...
 
enum  CVariation_ref_Base::EAllele_state {
  CVariation_ref_Base::eAllele_state_unknown = 0 , CVariation_ref_Base::eAllele_state_homozygous = 1 , CVariation_ref_Base::eAllele_state_heterozygous = 2 , CVariation_ref_Base::eAllele_state_hemizygous = 3 ,
  CVariation_ref_Base::eAllele_state_nullizygous = 4 , CVariation_ref_Base::eAllele_state_other = 255
}
 observed allele state, if known DEPRECATED: new field = VariantProperties.allele-state More...
 
enum  CVariation_ref_Base::C_Data::C_Set::EData_set_type {
  CVariation_ref_Base::C_Data::C_Set::eData_set_type_unknown = 0 , CVariation_ref_Base::C_Data::C_Set::eData_set_type_compound = 1 , CVariation_ref_Base::C_Data::C_Set::eData_set_type_products = 2 , CVariation_ref_Base::C_Data::C_Set::eData_set_type_haplotype = 3 ,
  CVariation_ref_Base::C_Data::C_Set::eData_set_type_genotype = 4 , CVariation_ref_Base::C_Data::C_Set::eData_set_type_mosaic = 5 , CVariation_ref_Base::C_Data::C_Set::eData_set_type_individual = 6 , CVariation_ref_Base::C_Data::C_Set::eData_set_type_population = 7 ,
  CVariation_ref_Base::C_Data::C_Set::eData_set_type_alleles = 8 , CVariation_ref_Base::C_Data::C_Set::eData_set_type_package = 9 , CVariation_ref_Base::C_Data::C_Set::eData_set_type_other = 255
}
 
enum class  CVariation_ref_Base::C_Data::C_Set::E_memberIndex { CVariation_ref_Base::C_Data::C_Set::e__allMandatory = 0 , CVariation_ref_Base::C_Data::C_Set::e_type , CVariation_ref_Base::C_Data::C_Set::e_variations , CVariation_ref_Base::C_Data::C_Set::e_name }
 
enum  CVariation_ref_Base::C_Data::E_Choice {
  CVariation_ref_Base::C_Data::e_not_set = 0 , CVariation_ref_Base::C_Data::e_Unknown , CVariation_ref_Base::C_Data::e_Note , CVariation_ref_Base::C_Data::e_Uniparental_disomy ,
  CVariation_ref_Base::C_Data::e_Instance , CVariation_ref_Base::C_Data::e_Set , CVariation_ref_Base::C_Data::e_Complex
}
 Choice variants. More...
 
enum  CVariation_ref_Base::C_Data::E_ChoiceStopper { CVariation_ref_Base::C_Data::e_MaxChoice = 7 }
 Maximum+1 value of the choice variant enumerator. More...
 
enum class  CVariation_ref_Base::C_E_Consequence::C_Frameshift::E_memberIndex { CVariation_ref_Base::C_E_Consequence::C_Frameshift::e__allMandatory = 0 , CVariation_ref_Base::C_E_Consequence::C_Frameshift::e_phase , CVariation_ref_Base::C_E_Consequence::C_Frameshift::e_x_length }
 
enum class  CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::E_memberIndex { CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::e__allMandatory = 0 , CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::e_reference , CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::e_test }
 
enum  CVariation_ref_Base::C_E_Consequence::E_Choice {
  CVariation_ref_Base::C_E_Consequence::e_not_set = 0 , CVariation_ref_Base::C_E_Consequence::e_Unknown , CVariation_ref_Base::C_E_Consequence::e_Splicing , CVariation_ref_Base::C_E_Consequence::e_Note ,
  CVariation_ref_Base::C_E_Consequence::e_Variation , CVariation_ref_Base::C_E_Consequence::e_Frameshift , CVariation_ref_Base::C_E_Consequence::e_Loss_of_heterozygosity
}
 Choice variants. More...
 
enum  CVariation_ref_Base::C_E_Consequence::E_ChoiceStopper { CVariation_ref_Base::C_E_Consequence::e_MaxChoice = 7 }
 Maximum+1 value of the choice variant enumerator. More...
 
enum class  CVariation_ref_Base::C_E_Somatic_origin::C_Condition::E_memberIndex { CVariation_ref_Base::C_E_Somatic_origin::C_Condition::e__allMandatory = 0 , CVariation_ref_Base::C_E_Somatic_origin::C_Condition::e_description , CVariation_ref_Base::C_E_Somatic_origin::C_Condition::e_object_id }
 
enum class  CVariation_ref_Base::C_E_Somatic_origin::E_memberIndex { CVariation_ref_Base::C_E_Somatic_origin::e__allMandatory = 0 , CVariation_ref_Base::C_E_Somatic_origin::e_source , CVariation_ref_Base::C_E_Somatic_origin::e_condition }
 
enum class  CVariation_ref_Base::E_memberIndex {
  CVariation_ref_Base::e__allMandatory = 0 , CVariation_ref_Base::e_id , CVariation_ref_Base::e_parent_id , CVariation_ref_Base::e_sample_id ,
  CVariation_ref_Base::e_other_ids , CVariation_ref_Base::e_name , CVariation_ref_Base::e_synonyms , CVariation_ref_Base::e_description ,
  CVariation_ref_Base::e_phenotype , CVariation_ref_Base::e_method , CVariation_ref_Base::e_population_data , CVariation_ref_Base::e_variant_prop ,
  CVariation_ref_Base::e_validated , CVariation_ref_Base::e_clinical_test , CVariation_ref_Base::e_allele_origin , CVariation_ref_Base::e_allele_state ,
  CVariation_ref_Base::e_allele_frequency , CVariation_ref_Base::e_is_ancestral_allele , CVariation_ref_Base::e_pub , CVariation_ref_Base::e_data ,
  CVariation_ref_Base::e_consequence , CVariation_ref_Base::e_location , CVariation_ref_Base::e_ext_locs , CVariation_ref_Base::e_ext ,
  CVariation_ref_Base::e_somatic_origin
}
 

Functions

 CDelta_item_Base::CDelta_item_Base (void)
 
virtual CDelta_item_Base::~CDelta_item_Base (void)
 
 CDelta_item_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
 CDelta_item_Base::C_Seq::C_Seq (void)
 
 CDelta_item_Base::C_Seq::~C_Seq (void)
 
 CDelta_item_Base::C_Seq::DECLARE_INTERNAL_TYPE_INFO ()
 
void CDelta_item_Base::C_Seq::Reset (void)
 Reset the whole object. More...
 
void CDelta_item_Base::C_Seq::ResetSelection (void)
 Reset the selection (set it to e_not_set). More...
 
E_Choice CDelta_item_Base::C_Seq::Which (void) const
 Which variant is currently selected. More...
 
void CDelta_item_Base::C_Seq::CheckSelected (E_Choice index) const
 Verify selection, throw exception if it differs from the expected. More...
 
void CDelta_item_Base::C_Seq::ThrowInvalidSelection (E_Choice index) const
 Throw 'InvalidSelection' exception. More...
 
static string CDelta_item_Base::C_Seq::SelectionName (E_Choice index)
 Retrieve selection name (for diagnostic purposes). More...
 
void CDelta_item_Base::C_Seq::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
 Select the requested variant if needed. More...
 
void CDelta_item_Base::C_Seq::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
 Select the requested variant if needed, allocating CObject variants from memory pool. More...
 
bool CDelta_item_Base::C_Seq::IsLiteral (void) const
 Check if variant Literal is selected. More...
 
const TLiteralCDelta_item_Base::C_Seq::GetLiteral (void) const
 Get the variant data. More...
 
TLiteralCDelta_item_Base::C_Seq::SetLiteral (void)
 Select the variant. More...
 
void CDelta_item_Base::C_Seq::SetLiteral (TLiteral &value)
 Select the variant and set its data. More...
 
bool CDelta_item_Base::C_Seq::IsLoc (void) const
 Check if variant Loc is selected. More...
 
const TLocCDelta_item_Base::C_Seq::GetLoc (void) const
 Get the variant data. More...
 
TLocCDelta_item_Base::C_Seq::SetLoc (void)
 Select the variant. More...
 
void CDelta_item_Base::C_Seq::SetLoc (TLoc &value)
 Select the variant and set its data. More...
 
bool CDelta_item_Base::C_Seq::IsThis (void) const
 Check if variant This is selected. More...
 
void CDelta_item_Base::C_Seq::SetThis (void)
 Select the variant. More...
 
 CDelta_item_Base::C_Seq::C_Seq (const C_Seq &)
 
C_SeqCDelta_item_Base::C_Seq::operator= (const C_Seq &)
 
void CDelta_item_Base::C_Seq::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CDelta_item_Base::EAction (void)
 Access to EAction's attributes (values, names) as defined in spec. More...
 
bool CDelta_item_Base::IsSetSeq (void) const
 Check if a value has been assigned to Seq data member. More...
 
bool CDelta_item_Base::CanGetSeq (void) const
 Check if it is safe to call GetSeq method. More...
 
void CDelta_item_Base::ResetSeq (void)
 Reset Seq data member. More...
 
const TSeqCDelta_item_Base::GetSeq (void) const
 Get the Seq member data. More...
 
void CDelta_item_Base::SetSeq (TSeq &value)
 Assign a value to Seq data member. More...
 
TSeqCDelta_item_Base::SetSeq (void)
 Assign a value to Seq data member. More...
 
bool CDelta_item_Base::IsSetMultiplier (void) const
 Multiplier allows representing a tandem, e.g. More...
 
bool CDelta_item_Base::CanGetMultiplier (void) const
 Check if it is safe to call GetMultiplier method. More...
 
void CDelta_item_Base::ResetMultiplier (void)
 Reset Multiplier data member. More...
 
TMultiplier CDelta_item_Base::GetMultiplier (void) const
 Get the Multiplier member data. More...
 
void CDelta_item_Base::SetMultiplier (TMultiplier value)
 Assign a value to Multiplier data member. More...
 
TMultiplierCDelta_item_Base::SetMultiplier (void)
 Assign a value to Multiplier data member. More...
 
bool CDelta_item_Base::IsSetMultiplier_fuzz (void) const
 Check if a value has been assigned to Multiplier_fuzz data member. More...
 
bool CDelta_item_Base::CanGetMultiplier_fuzz (void) const
 Check if it is safe to call GetMultiplier_fuzz method. More...
 
void CDelta_item_Base::ResetMultiplier_fuzz (void)
 Reset Multiplier_fuzz data member. More...
 
const TMultiplier_fuzzCDelta_item_Base::GetMultiplier_fuzz (void) const
 Get the Multiplier_fuzz member data. More...
 
void CDelta_item_Base::SetMultiplier_fuzz (TMultiplier_fuzz &value)
 Assign a value to Multiplier_fuzz data member. More...
 
TMultiplier_fuzzCDelta_item_Base::SetMultiplier_fuzz (void)
 Assign a value to Multiplier_fuzz data member. More...
 
bool CDelta_item_Base::IsSetAction (void) const
 Check if a value has been assigned to Action data member. More...
 
bool CDelta_item_Base::CanGetAction (void) const
 Check if it is safe to call GetAction method. More...
 
void CDelta_item_Base::ResetAction (void)
 Reset Action data member. More...
 
void CDelta_item_Base::SetDefaultAction (void)
 Assign default value to Action data member. More...
 
TAction CDelta_item_Base::GetAction (void) const
 Get the Action member data. More...
 
void CDelta_item_Base::SetAction (TAction value)
 Assign a value to Action data member. More...
 
TActionCDelta_item_Base::SetAction (void)
 Assign a value to Action data member. More...
 
virtual void CDelta_item_Base::Reset (void)
 Reset the whole object. More...
 
 CDelta_item_Base::CDelta_item_Base (const CDelta_item_Base &)
 
CDelta_item_BaseCDelta_item_Base::operator= (const CDelta_item_Base &)
 
 CExt_loc::CExt_loc (void)
 
 CExt_loc::~CExt_loc (void)
 
 CExt_loc::CExt_loc (const CExt_loc &value)
 
CExt_locCExt_loc::operator= (const CExt_loc &value)
 
 CExt_loc_Base::CExt_loc_Base (void)
 
virtual CExt_loc_Base::~CExt_loc_Base (void)
 
 CExt_loc_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CExt_loc_Base::IsSetId (void) const
 Check if a value has been assigned to Id data member. More...
 
bool CExt_loc_Base::CanGetId (void) const
 Check if it is safe to call GetId method. More...
 
void CExt_loc_Base::ResetId (void)
 Reset Id data member. More...
 
const TIdCExt_loc_Base::GetId (void) const
 Get the Id member data. More...
 
void CExt_loc_Base::SetId (TId &value)
 Assign a value to Id data member. More...
 
TIdCExt_loc_Base::SetId (void)
 Assign a value to Id data member. More...
 
bool CExt_loc_Base::IsSetLocation (void) const
 Check if a value has been assigned to Location data member. More...
 
bool CExt_loc_Base::CanGetLocation (void) const
 Check if it is safe to call GetLocation method. More...
 
void CExt_loc_Base::ResetLocation (void)
 Reset Location data member. More...
 
const TLocationCExt_loc_Base::GetLocation (void) const
 Get the Location member data. More...
 
void CExt_loc_Base::SetLocation (TLocation &value)
 Assign a value to Location data member. More...
 
TLocationCExt_loc_Base::SetLocation (void)
 Assign a value to Location data member. More...
 
virtual void CExt_loc_Base::Reset (void)
 Reset the whole object. More...
 
 CExt_loc_Base::CExt_loc_Base (const CExt_loc_Base &)
 
CExt_loc_BaseCExt_loc_Base::operator= (const CExt_loc_Base &)
 
 CPhenotype::CPhenotype (void)
 
 CPhenotype::~CPhenotype (void)
 
 CPhenotype::CPhenotype (const CPhenotype &value)
 
CPhenotypeCPhenotype::operator= (const CPhenotype &value)
 
 CPhenotype_Base::CPhenotype_Base (void)
 
virtual CPhenotype_Base::~CPhenotype_Base (void)
 
 CPhenotype_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CPhenotype_Base::EClinical_significance (void)
 Access to EClinical_significance's attributes (values, names) as defined in spec. More...
 
bool CPhenotype_Base::IsSetSource (void) const
 Check if a value has been assigned to Source data member. More...
 
bool CPhenotype_Base::CanGetSource (void) const
 Check if it is safe to call GetSource method. More...
 
void CPhenotype_Base::ResetSource (void)
 Reset Source data member. More...
 
const TSourceCPhenotype_Base::GetSource (void) const
 Get the Source member data. More...
 
void CPhenotype_Base::SetSource (const TSource &value)
 Assign a value to Source data member. More...
 
void CPhenotype_Base::SetSource (TSource &&value)
 
TSourceCPhenotype_Base::SetSource (void)
 Assign a value to Source data member. More...
 
bool CPhenotype_Base::IsSetTerm (void) const
 Check if a value has been assigned to Term data member. More...
 
bool CPhenotype_Base::CanGetTerm (void) const
 Check if it is safe to call GetTerm method. More...
 
void CPhenotype_Base::ResetTerm (void)
 Reset Term data member. More...
 
const TTermCPhenotype_Base::GetTerm (void) const
 Get the Term member data. More...
 
void CPhenotype_Base::SetTerm (const TTerm &value)
 Assign a value to Term data member. More...
 
void CPhenotype_Base::SetTerm (TTerm &&value)
 
TTermCPhenotype_Base::SetTerm (void)
 Assign a value to Term data member. More...
 
bool CPhenotype_Base::IsSetXref (void) const
 Check if a value has been assigned to Xref data member. More...
 
bool CPhenotype_Base::CanGetXref (void) const
 Check if it is safe to call GetXref method. More...
 
void CPhenotype_Base::ResetXref (void)
 Reset Xref data member. More...
 
const TXrefCPhenotype_Base::GetXref (void) const
 Get the Xref member data. More...
 
TXrefCPhenotype_Base::SetXref (void)
 Assign a value to Xref data member. More...
 
bool CPhenotype_Base::IsSetClinical_significance (void) const
 Check if a value has been assigned to Clinical_significance data member. More...
 
bool CPhenotype_Base::CanGetClinical_significance (void) const
 Check if it is safe to call GetClinical_significance method. More...
 
void CPhenotype_Base::ResetClinical_significance (void)
 Reset Clinical_significance data member. More...
 
TClinical_significance CPhenotype_Base::GetClinical_significance (void) const
 Get the Clinical_significance member data. More...
 
void CPhenotype_Base::SetClinical_significance (TClinical_significance value)
 Assign a value to Clinical_significance data member. More...
 
TClinical_significanceCPhenotype_Base::SetClinical_significance (void)
 Assign a value to Clinical_significance data member. More...
 
virtual void CPhenotype_Base::Reset (void)
 Reset the whole object. More...
 
 CPhenotype_Base::CPhenotype_Base (const CPhenotype_Base &)
 
CPhenotype_BaseCPhenotype_Base::operator= (const CPhenotype_Base &)
 
 CPopulation_data::CPopulation_data (void)
 
 CPopulation_data::~CPopulation_data (void)
 
 CPopulation_data::CPopulation_data (const CPopulation_data &value)
 
CPopulation_dataCPopulation_data::operator= (const CPopulation_data &value)
 
 CPopulation_data_Base::CPopulation_data_Base (void)
 
virtual CPopulation_data_Base::~CPopulation_data_Base (void)
 
 CPopulation_data_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CPopulation_data_Base::EFlags (void)
 Access to EFlags's attributes (values, names) as defined in spec. More...
 
bool CPopulation_data_Base::IsSetPopulation (void) const
 assayed population (e.g. More...
 
bool CPopulation_data_Base::CanGetPopulation (void) const
 Check if it is safe to call GetPopulation method. More...
 
void CPopulation_data_Base::ResetPopulation (void)
 Reset Population data member. More...
 
const TPopulationCPopulation_data_Base::GetPopulation (void) const
 Get the Population member data. More...
 
void CPopulation_data_Base::SetPopulation (const TPopulation &value)
 Assign a value to Population data member. More...
 
void CPopulation_data_Base::SetPopulation (TPopulation &&value)
 
TPopulationCPopulation_data_Base::SetPopulation (void)
 Assign a value to Population data member. More...
 
bool CPopulation_data_Base::IsSetGenotype_frequency (void) const
 Check if a value has been assigned to Genotype_frequency data member. More...
 
bool CPopulation_data_Base::CanGetGenotype_frequency (void) const
 Check if it is safe to call GetGenotype_frequency method. More...
 
void CPopulation_data_Base::ResetGenotype_frequency (void)
 Reset Genotype_frequency data member. More...
 
TGenotype_frequency CPopulation_data_Base::GetGenotype_frequency (void) const
 Get the Genotype_frequency member data. More...
 
void CPopulation_data_Base::SetGenotype_frequency (TGenotype_frequency value)
 Assign a value to Genotype_frequency data member. More...
 
TGenotype_frequencyCPopulation_data_Base::SetGenotype_frequency (void)
 Assign a value to Genotype_frequency data member. More...
 
bool CPopulation_data_Base::IsSetChromosomes_tested (void) const
 Check if a value has been assigned to Chromosomes_tested data member. More...
 
bool CPopulation_data_Base::CanGetChromosomes_tested (void) const
 Check if it is safe to call GetChromosomes_tested method. More...
 
void CPopulation_data_Base::ResetChromosomes_tested (void)
 Reset Chromosomes_tested data member. More...
 
TChromosomes_tested CPopulation_data_Base::GetChromosomes_tested (void) const
 Get the Chromosomes_tested member data. More...
 
void CPopulation_data_Base::SetChromosomes_tested (TChromosomes_tested value)
 Assign a value to Chromosomes_tested data member. More...
 
TChromosomes_testedCPopulation_data_Base::SetChromosomes_tested (void)
 Assign a value to Chromosomes_tested data member. More...
 
bool CPopulation_data_Base::IsSetSample_ids (void) const
 Check if a value has been assigned to Sample_ids data member. More...
 
bool CPopulation_data_Base::CanGetSample_ids (void) const
 Check if it is safe to call GetSample_ids method. More...
 
void CPopulation_data_Base::ResetSample_ids (void)
 Reset Sample_ids data member. More...
 
const TSample_idsCPopulation_data_Base::GetSample_ids (void) const
 Get the Sample_ids member data. More...
 
TSample_idsCPopulation_data_Base::SetSample_ids (void)
 Assign a value to Sample_ids data member. More...
 
bool CPopulation_data_Base::IsSetAllele_frequency (void) const
 Check if a value has been assigned to Allele_frequency data member. More...
 
bool CPopulation_data_Base::CanGetAllele_frequency (void) const
 Check if it is safe to call GetAllele_frequency method. More...
 
void CPopulation_data_Base::ResetAllele_frequency (void)
 Reset Allele_frequency data member. More...
 
TAllele_frequency CPopulation_data_Base::GetAllele_frequency (void) const
 Get the Allele_frequency member data. More...
 
void CPopulation_data_Base::SetAllele_frequency (TAllele_frequency value)
 Assign a value to Allele_frequency data member. More...
 
TAllele_frequencyCPopulation_data_Base::SetAllele_frequency (void)
 Assign a value to Allele_frequency data member. More...
 
bool CPopulation_data_Base::IsSetFlags (void) const
 Check if a value has been assigned to Flags data member. More...
 
bool CPopulation_data_Base::CanGetFlags (void) const
 Check if it is safe to call GetFlags method. More...
 
void CPopulation_data_Base::ResetFlags (void)
 Reset Flags data member. More...
 
TFlags CPopulation_data_Base::GetFlags (void) const
 Get the Flags member data. More...
 
void CPopulation_data_Base::SetFlags (TFlags value)
 Assign a value to Flags data member. More...
 
TFlagsCPopulation_data_Base::SetFlags (void)
 Assign a value to Flags data member. More...
 
virtual void CPopulation_data_Base::Reset (void)
 Reset the whole object. More...
 
 CPopulation_data_Base::CPopulation_data_Base (const CPopulation_data_Base &)
 
CPopulation_data_BaseCPopulation_data_Base::operator= (const CPopulation_data_Base &)
 
 CVariantProperties_Base::CVariantProperties_Base (void)
 
virtual CVariantProperties_Base::~CVariantProperties_Base (void)
 
 CVariantProperties_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CVariantProperties_Base::EResource_link (void)
 Access to EResource_link's attributes (values, names) as defined in spec. More...
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CVariantProperties_Base::EGene_location (void)
 Access to EGene_location's attributes (values, names) as defined in spec. More...
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CVariantProperties_Base::EEffect (void)
 Access to EEffect's attributes (values, names) as defined in spec. More...
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CVariantProperties_Base::EMapping (void)
 Access to EMapping's attributes (values, names) as defined in spec. More...
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CVariantProperties_Base::EMap_weight (void)
 Access to EMap_weight's attributes (values, names) as defined in spec. More...
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CVariantProperties_Base::EFrequency_based_validation (void)
 Access to EFrequency_based_validation's attributes (values, names) as defined in spec. More...
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CVariantProperties_Base::EGenotype (void)
 Access to EGenotype's attributes (values, names) as defined in spec. More...
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CVariantProperties_Base::EQuality_check (void)
 Access to EQuality_check's attributes (values, names) as defined in spec. More...
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CVariantProperties_Base::EConfidence (void)
 Access to EConfidence's attributes (values, names) as defined in spec. More...
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CVariantProperties_Base::EAllele_origin (void)
 Access to EAllele_origin's attributes (values, names) as defined in spec. More...
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CVariantProperties_Base::EAllele_state (void)
 Access to EAllele_state's attributes (values, names) as defined in spec. More...
 
bool CVariantProperties_Base::IsSetVersion (void) const
 Check if a value has been assigned to Version data member. More...
 
bool CVariantProperties_Base::CanGetVersion (void) const
 Check if it is safe to call GetVersion method. More...
 
void CVariantProperties_Base::ResetVersion (void)
 Reset Version data member. More...
 
TVersion CVariantProperties_Base::GetVersion (void) const
 Get the Version member data. More...
 
void CVariantProperties_Base::SetVersion (TVersion value)
 Assign a value to Version data member. More...
 
TVersionCVariantProperties_Base::SetVersion (void)
 Assign a value to Version data member. More...
 
bool CVariantProperties_Base::IsSetResource_link (void) const
 Check if a value has been assigned to Resource_link data member. More...
 
bool CVariantProperties_Base::CanGetResource_link (void) const
 Check if it is safe to call GetResource_link method. More...
 
void CVariantProperties_Base::ResetResource_link (void)
 Reset Resource_link data member. More...
 
TResource_link CVariantProperties_Base::GetResource_link (void) const
 Get the Resource_link member data. More...
 
void CVariantProperties_Base::SetResource_link (TResource_link value)
 Assign a value to Resource_link data member. More...
 
TResource_linkCVariantProperties_Base::SetResource_link (void)
 Assign a value to Resource_link data member. More...
 
bool CVariantProperties_Base::IsSetGene_location (void) const
 Check if a value has been assigned to Gene_location data member. More...
 
bool CVariantProperties_Base::CanGetGene_location (void) const
 Check if it is safe to call GetGene_location method. More...
 
void CVariantProperties_Base::ResetGene_location (void)
 Reset Gene_location data member. More...
 
TGene_location CVariantProperties_Base::GetGene_location (void) const
 Get the Gene_location member data. More...
 
void CVariantProperties_Base::SetGene_location (TGene_location value)
 Assign a value to Gene_location data member. More...
 
TGene_locationCVariantProperties_Base::SetGene_location (void)
 Assign a value to Gene_location data member. More...
 
bool CVariantProperties_Base::IsSetEffect (void) const
 Check if a value has been assigned to Effect data member. More...
 
bool CVariantProperties_Base::CanGetEffect (void) const
 Check if it is safe to call GetEffect method. More...
 
void CVariantProperties_Base::ResetEffect (void)
 Reset Effect data member. More...
 
TEffect CVariantProperties_Base::GetEffect (void) const
 Get the Effect member data. More...
 
void CVariantProperties_Base::SetEffect (TEffect value)
 Assign a value to Effect data member. More...
 
TEffectCVariantProperties_Base::SetEffect (void)
 Assign a value to Effect data member. More...
 
bool CVariantProperties_Base::IsSetMapping (void) const
 Check if a value has been assigned to Mapping data member. More...
 
bool CVariantProperties_Base::CanGetMapping (void) const
 Check if it is safe to call GetMapping method. More...
 
void CVariantProperties_Base::ResetMapping (void)
 Reset Mapping data member. More...
 
TMapping CVariantProperties_Base::GetMapping (void) const
 Get the Mapping member data. More...
 
void CVariantProperties_Base::SetMapping (TMapping value)
 Assign a value to Mapping data member. More...
 
TMappingCVariantProperties_Base::SetMapping (void)
 Assign a value to Mapping data member. More...
 
bool CVariantProperties_Base::IsSetMap_weight (void) const
 Check if a value has been assigned to Map_weight data member. More...
 
bool CVariantProperties_Base::CanGetMap_weight (void) const
 Check if it is safe to call GetMap_weight method. More...
 
void CVariantProperties_Base::ResetMap_weight (void)
 Reset Map_weight data member. More...
 
TMap_weight CVariantProperties_Base::GetMap_weight (void) const
 Get the Map_weight member data. More...
 
void CVariantProperties_Base::SetMap_weight (TMap_weight value)
 Assign a value to Map_weight data member. More...
 
TMap_weightCVariantProperties_Base::SetMap_weight (void)
 Assign a value to Map_weight data member. More...
 
bool CVariantProperties_Base::IsSetFrequency_based_validation (void) const
 Check if a value has been assigned to Frequency_based_validation data member. More...
 
bool CVariantProperties_Base::CanGetFrequency_based_validation (void) const
 Check if it is safe to call GetFrequency_based_validation method. More...
 
void CVariantProperties_Base::ResetFrequency_based_validation (void)
 Reset Frequency_based_validation data member. More...
 
TFrequency_based_validation CVariantProperties_Base::GetFrequency_based_validation (void) const
 Get the Frequency_based_validation member data. More...
 
void CVariantProperties_Base::SetFrequency_based_validation (TFrequency_based_validation value)
 Assign a value to Frequency_based_validation data member. More...
 
TFrequency_based_validationCVariantProperties_Base::SetFrequency_based_validation (void)
 Assign a value to Frequency_based_validation data member. More...
 
bool CVariantProperties_Base::IsSetGenotype (void) const
 Check if a value has been assigned to Genotype data member. More...
 
bool CVariantProperties_Base::CanGetGenotype (void) const
 Check if it is safe to call GetGenotype method. More...
 
void CVariantProperties_Base::ResetGenotype (void)
 Reset Genotype data member. More...
 
TGenotype CVariantProperties_Base::GetGenotype (void) const
 Get the Genotype member data. More...
 
void CVariantProperties_Base::SetGenotype (TGenotype value)
 Assign a value to Genotype data member. More...
 
TGenotypeCVariantProperties_Base::SetGenotype (void)
 Assign a value to Genotype data member. More...
 
bool CVariantProperties_Base::IsSetProject_data (void) const
 project IDs are IDs from BioProjects in order to report information about project relationships, we require projects to be registered This field in many ways duplicates dbxrefs; however, the intention of this field is to more adequately reflect ownership and data source More...
 
bool CVariantProperties_Base::CanGetProject_data (void) const
 Check if it is safe to call GetProject_data method. More...
 
void CVariantProperties_Base::ResetProject_data (void)
 Reset Project_data data member. More...
 
const TProject_dataCVariantProperties_Base::GetProject_data (void) const
 Get the Project_data member data. More...
 
TProject_dataCVariantProperties_Base::SetProject_data (void)
 Assign a value to Project_data data member. More...
 
bool CVariantProperties_Base::IsSetQuality_check (void) const
 Check if a value has been assigned to Quality_check data member. More...
 
bool CVariantProperties_Base::CanGetQuality_check (void) const
 Check if it is safe to call GetQuality_check method. More...
 
void CVariantProperties_Base::ResetQuality_check (void)
 Reset Quality_check data member. More...
 
TQuality_check CVariantProperties_Base::GetQuality_check (void) const
 Get the Quality_check member data. More...
 
void CVariantProperties_Base::SetQuality_check (TQuality_check value)
 Assign a value to Quality_check data member. More...
 
TQuality_checkCVariantProperties_Base::SetQuality_check (void)
 Assign a value to Quality_check data member. More...
 
bool CVariantProperties_Base::IsSetConfidence (void) const
 Check if a value has been assigned to Confidence data member. More...
 
bool CVariantProperties_Base::CanGetConfidence (void) const
 Check if it is safe to call GetConfidence method. More...
 
void CVariantProperties_Base::ResetConfidence (void)
 Reset Confidence data member. More...
 
TConfidence CVariantProperties_Base::GetConfidence (void) const
 Get the Confidence member data. More...
 
void CVariantProperties_Base::SetConfidence (TConfidence value)
 Assign a value to Confidence data member. More...
 
TConfidenceCVariantProperties_Base::SetConfidence (void)
 Assign a value to Confidence data member. More...
 
bool CVariantProperties_Base::IsSetOther_validation (void) const
 has this variant been validated? While a boolean flag offers no subtle distinctions of validation methods, occasionally it is only known as a single boolean value NOTE: this flag is redundant and should be omitted if more comprehensive validation information is present Check if a value has been assigned to Other_validation data member. More...
 
bool CVariantProperties_Base::CanGetOther_validation (void) const
 Check if it is safe to call GetOther_validation method. More...
 
void CVariantProperties_Base::ResetOther_validation (void)
 Reset Other_validation data member. More...
 
TOther_validation CVariantProperties_Base::GetOther_validation (void) const
 Get the Other_validation member data. More...
 
void CVariantProperties_Base::SetOther_validation (TOther_validation value)
 Assign a value to Other_validation data member. More...
 
TOther_validationCVariantProperties_Base::SetOther_validation (void)
 Assign a value to Other_validation data member. More...
 
bool CVariantProperties_Base::IsSetAllele_origin (void) const
 Check if a value has been assigned to Allele_origin data member. More...
 
bool CVariantProperties_Base::CanGetAllele_origin (void) const
 Check if it is safe to call GetAllele_origin method. More...
 
void CVariantProperties_Base::ResetAllele_origin (void)
 Reset Allele_origin data member. More...
 
TAllele_origin CVariantProperties_Base::GetAllele_origin (void) const
 Get the Allele_origin member data. More...
 
void CVariantProperties_Base::SetAllele_origin (TAllele_origin value)
 Assign a value to Allele_origin data member. More...
 
TAllele_originCVariantProperties_Base::SetAllele_origin (void)
 Assign a value to Allele_origin data member. More...
 
bool CVariantProperties_Base::IsSetAllele_state (void) const
 Check if a value has been assigned to Allele_state data member. More...
 
bool CVariantProperties_Base::CanGetAllele_state (void) const
 Check if it is safe to call GetAllele_state method. More...
 
void CVariantProperties_Base::ResetAllele_state (void)
 Reset Allele_state data member. More...
 
TAllele_state CVariantProperties_Base::GetAllele_state (void) const
 Get the Allele_state member data. More...
 
void CVariantProperties_Base::SetAllele_state (TAllele_state value)
 Assign a value to Allele_state data member. More...
 
TAllele_stateCVariantProperties_Base::SetAllele_state (void)
 Assign a value to Allele_state data member. More...
 
bool CVariantProperties_Base::IsSetAllele_frequency (void) const
 NOTE: 'allele-frequency' here refers to the minor allele frequency of the default population Check if a value has been assigned to Allele_frequency data member. More...
 
bool CVariantProperties_Base::CanGetAllele_frequency (void) const
 Check if it is safe to call GetAllele_frequency method. More...
 
void CVariantProperties_Base::ResetAllele_frequency (void)
 Reset Allele_frequency data member. More...
 
TAllele_frequency CVariantProperties_Base::GetAllele_frequency (void) const
 Get the Allele_frequency member data. More...
 
void CVariantProperties_Base::SetAllele_frequency (TAllele_frequency value)
 Assign a value to Allele_frequency data member. More...
 
TAllele_frequencyCVariantProperties_Base::SetAllele_frequency (void)
 Assign a value to Allele_frequency data member. More...
 
bool CVariantProperties_Base::IsSetIs_ancestral_allele (void) const
 is this variant the ancestral allele? Check if a value has been assigned to Is_ancestral_allele data member. More...
 
bool CVariantProperties_Base::CanGetIs_ancestral_allele (void) const
 Check if it is safe to call GetIs_ancestral_allele method. More...
 
void CVariantProperties_Base::ResetIs_ancestral_allele (void)
 Reset Is_ancestral_allele data member. More...
 
TIs_ancestral_allele CVariantProperties_Base::GetIs_ancestral_allele (void) const
 Get the Is_ancestral_allele member data. More...
 
void CVariantProperties_Base::SetIs_ancestral_allele (TIs_ancestral_allele value)
 Assign a value to Is_ancestral_allele data member. More...
 
TIs_ancestral_alleleCVariantProperties_Base::SetIs_ancestral_allele (void)
 Assign a value to Is_ancestral_allele data member. More...
 
virtual void CVariantProperties_Base::Reset (void)
 Reset the whole object. More...
 
 CVariantProperties_Base::CVariantProperties_Base (const CVariantProperties_Base &)
 
CVariantProperties_BaseCVariantProperties_Base::operator= (const CVariantProperties_Base &)
 
 CVariation_inst::CVariation_inst (void)
 
 CVariation_inst::~CVariation_inst (void)
 
 CVariation_inst::CVariation_inst (const CVariation_inst &value)
 
CVariation_instCVariation_inst::operator= (const CVariation_inst &value)
 
 CVariation_inst_Base::CVariation_inst_Base (void)
 
virtual CVariation_inst_Base::~CVariation_inst_Base (void)
 
 CVariation_inst_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CVariation_inst_Base::EType (void)
 Access to EType's attributes (values, names) as defined in spec. More...
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CVariation_inst_Base::EObservation (void)
 Access to EObservation's attributes (values, names) as defined in spec. More...
 
bool CVariation_inst_Base::IsSetType (void) const
 Check if a value has been assigned to Type data member. More...
 
bool CVariation_inst_Base::CanGetType (void) const
 Check if it is safe to call GetType method. More...
 
void CVariation_inst_Base::ResetType (void)
 Reset Type data member. More...
 
TType CVariation_inst_Base::GetType (void) const
 Get the Type member data. More...
 
void CVariation_inst_Base::SetType (TType value)
 Assign a value to Type data member. More...
 
TTypeCVariation_inst_Base::SetType (void)
 Assign a value to Type data member. More...
 
bool CVariation_inst_Base::IsSetDelta (void) const
 Sequence that replaces the location, in biological order. More...
 
bool CVariation_inst_Base::CanGetDelta (void) const
 Check if it is safe to call GetDelta method. More...
 
void CVariation_inst_Base::ResetDelta (void)
 Reset Delta data member. More...
 
const TDeltaCVariation_inst_Base::GetDelta (void) const
 Get the Delta member data. More...
 
TDeltaCVariation_inst_Base::SetDelta (void)
 Assign a value to Delta data member. More...
 
bool CVariation_inst_Base::IsSetObservation (void) const
 Check if a value has been assigned to Observation data member. More...
 
bool CVariation_inst_Base::CanGetObservation (void) const
 Check if it is safe to call GetObservation method. More...
 
void CVariation_inst_Base::ResetObservation (void)
 Reset Observation data member. More...
 
TObservation CVariation_inst_Base::GetObservation (void) const
 Get the Observation member data. More...
 
void CVariation_inst_Base::SetObservation (TObservation value)
 Assign a value to Observation data member. More...
 
TObservationCVariation_inst_Base::SetObservation (void)
 Assign a value to Observation data member. More...
 
virtual void CVariation_inst_Base::Reset (void)
 Reset the whole object. More...
 
 CVariation_inst_Base::CVariation_inst_Base (const CVariation_inst_Base &)
 
CVariation_inst_BaseCVariation_inst_Base::operator= (const CVariation_inst_Base &)
 
 CVariation_ref_Base::CVariation_ref_Base (void)
 
virtual CVariation_ref_Base::~CVariation_ref_Base (void)
 
 CVariation_ref_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CVariation_ref_Base::EMethod_E (void)
 Access to EMethod_E's attributes (values, names) as defined in spec. More...
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CVariation_ref_Base::EAllele_origin (void)
 Access to EAllele_origin's attributes (values, names) as defined in spec. More...
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CVariation_ref_Base::EAllele_state (void)
 Access to EAllele_state's attributes (values, names) as defined in spec. More...
 
 CVariation_ref_Base::C_Data::C_Data (void)
 
 CVariation_ref_Base::C_Data::~C_Data (void)
 
 CVariation_ref_Base::C_Data::DECLARE_INTERNAL_TYPE_INFO ()
 
 CVariation_ref_Base::C_Data::C_Set::C_Set (void)
 
 CVariation_ref_Base::C_Data::C_Set::~C_Set (void)
 
 CVariation_ref_Base::C_Data::C_Set::DECLARE_INTERNAL_TYPE_INFO ()
 
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() CVariation_ref_Base::C_Data::C_Set::EData_set_type (void)
 Access to EData_set_type's attributes (values, names) as defined in spec. More...
 
bool CVariation_ref_Base::C_Data::C_Set::IsSetType (void) const
 Check if a value has been assigned to Type data member. More...
 
bool CVariation_ref_Base::C_Data::C_Set::CanGetType (void) const
 Check if it is safe to call GetType method. More...
 
void CVariation_ref_Base::C_Data::C_Set::ResetType (void)
 Reset Type data member. More...
 
TType CVariation_ref_Base::C_Data::C_Set::GetType (void) const
 Get the Type member data. More...
 
void CVariation_ref_Base::C_Data::C_Set::SetType (TType value)
 Assign a value to Type data member. More...
 
TTypeCVariation_ref_Base::C_Data::C_Set::SetType (void)
 Assign a value to Type data member. More...
 
bool CVariation_ref_Base::C_Data::C_Set::IsSetVariations (void) const
 Check if a value has been assigned to Variations data member. More...
 
bool CVariation_ref_Base::C_Data::C_Set::CanGetVariations (void) const
 Check if it is safe to call GetVariations method. More...
 
void CVariation_ref_Base::C_Data::C_Set::ResetVariations (void)
 Reset Variations data member. More...
 
const TVariationsCVariation_ref_Base::C_Data::C_Set::GetVariations (void) const
 Get the Variations member data. More...
 
TVariationsCVariation_ref_Base::C_Data::C_Set::SetVariations (void)
 Assign a value to Variations data member. More...
 
bool CVariation_ref_Base::C_Data::C_Set::IsSetName (void) const
 Check if a value has been assigned to Name data member. More...
 
bool CVariation_ref_Base::C_Data::C_Set::CanGetName (void) const
 Check if it is safe to call GetName method. More...
 
void CVariation_ref_Base::C_Data::C_Set::ResetName (void)
 Reset Name data member. More...
 
const TNameCVariation_ref_Base::C_Data::C_Set::GetName (void) const
 Get the Name member data. More...
 
void CVariation_ref_Base::C_Data::C_Set::SetName (const TName &value)
 Assign a value to Name data member. More...
 
void CVariation_ref_Base::C_Data::C_Set::SetName (TName &&value)
 
TNameCVariation_ref_Base::C_Data::C_Set::SetName (void)
 Assign a value to Name data member. More...
 
void CVariation_ref_Base::C_Data::C_Set::Reset (void)
 Reset the whole object. More...
 
 CVariation_ref_Base::C_Data::C_Set::C_Set (const C_Set &)
 
C_SetCVariation_ref_Base::C_Data::C_Set::operator= (const C_Set &)
 
void CVariation_ref_Base::C_Data::Reset (void)
 Reset the whole object. More...
 
void CVariation_ref_Base::C_Data::ResetSelection (void)
 Reset the selection (set it to e_not_set). More...
 
E_Choice CVariation_ref_Base::C_Data::Which (void) const
 Which variant is currently selected. More...
 
void CVariation_ref_Base::C_Data::CheckSelected (E_Choice index) const
 Verify selection, throw exception if it differs from the expected. More...
 
void CVariation_ref_Base::C_Data::ThrowInvalidSelection (E_Choice index) const
 Throw 'InvalidSelection' exception. More...
 
static string CVariation_ref_Base::C_Data::SelectionName (E_Choice index)
 Retrieve selection name (for diagnostic purposes). More...
 
void CVariation_ref_Base::C_Data::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
 Select the requested variant if needed. More...
 
void CVariation_ref_Base::C_Data::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
 Select the requested variant if needed, allocating CObject variants from memory pool. More...
 
bool CVariation_ref_Base::C_Data::IsUnknown (void) const
 Check if variant Unknown is selected. More...
 
void CVariation_ref_Base::C_Data::SetUnknown (void)
 Select the variant. More...
 
bool CVariation_ref_Base::C_Data::IsNote (void) const
 Check if variant Note is selected. More...
 
const TNoteCVariation_ref_Base::C_Data::GetNote (void) const
 Get the variant data. More...
 
TNoteCVariation_ref_Base::C_Data::SetNote (void)
 Select the variant. More...
 
void CVariation_ref_Base::C_Data::SetNote (const TNote &value)
 Select the variant and set its data. More...
 
bool CVariation_ref_Base::C_Data::IsUniparental_disomy (void) const
 Check if variant Uniparental_disomy is selected. More...
 
void CVariation_ref_Base::C_Data::SetUniparental_disomy (void)
 Select the variant. More...
 
bool CVariation_ref_Base::C_Data::IsInstance (void) const
 Check if variant Instance is selected. More...
 
const TInstanceCVariation_ref_Base::C_Data::GetInstance (void) const
 Get the variant data. More...
 
TInstanceCVariation_ref_Base::C_Data::SetInstance (void)
 Select the variant. More...
 
void CVariation_ref_Base::C_Data::SetInstance (TInstance &value)
 Select the variant and set its data. More...
 
bool CVariation_ref_Base::C_Data::IsSet (void) const
 Check if variant Set is selected. More...
 
const TSetCVariation_ref_Base::C_Data::GetSet (void) const
 Get the variant data. More...
 
TSetCVariation_ref_Base::C_Data::SetSet (void)
 Select the variant. More...
 
void CVariation_ref_Base::C_Data::SetSet (TSet &value)
 Select the variant and set its data. More...
 
bool CVariation_ref_Base::C_Data::IsComplex (void) const
 Check if variant Complex is selected. More...
 
void CVariation_ref_Base::C_Data::SetComplex (void)
 Select the variant. More...
 
 CVariation_ref_Base::C_Data::C_Data (const C_Data &)
 
C_DataCVariation_ref_Base::C_Data::operator= (const C_Data &)
 
void CVariation_ref_Base::C_Data::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
 
 CVariation_ref_Base::C_E_Consequence::C_E_Consequence (void)
 
 CVariation_ref_Base::C_E_Consequence::~C_E_Consequence (void)
 
 CVariation_ref_Base::C_E_Consequence::DECLARE_INTERNAL_TYPE_INFO ()
 
 CVariation_ref_Base::C_E_Consequence::C_Frameshift::C_Frameshift (void)
 
 CVariation_ref_Base::C_E_Consequence::C_Frameshift::~C_Frameshift (void)
 
 CVariation_ref_Base::C_E_Consequence::C_Frameshift::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CVariation_ref_Base::C_E_Consequence::C_Frameshift::IsSetPhase (void) const
 Check if a value has been assigned to Phase data member. More...
 
bool CVariation_ref_Base::C_E_Consequence::C_Frameshift::CanGetPhase (void) const
 Check if it is safe to call GetPhase method. More...
 
void CVariation_ref_Base::C_E_Consequence::C_Frameshift::ResetPhase (void)
 Reset Phase data member. More...
 
TPhase CVariation_ref_Base::C_E_Consequence::C_Frameshift::GetPhase (void) const
 Get the Phase member data. More...
 
void CVariation_ref_Base::C_E_Consequence::C_Frameshift::SetPhase (TPhase value)
 Assign a value to Phase data member. More...
 
TPhaseCVariation_ref_Base::C_E_Consequence::C_Frameshift::SetPhase (void)
 Assign a value to Phase data member. More...
 
bool CVariation_ref_Base::C_E_Consequence::C_Frameshift::IsSetX_length (void) const
 Check if a value has been assigned to X_length data member. More...
 
bool CVariation_ref_Base::C_E_Consequence::C_Frameshift::CanGetX_length (void) const
 Check if it is safe to call GetX_length method. More...
 
void CVariation_ref_Base::C_E_Consequence::C_Frameshift::ResetX_length (void)
 Reset X_length data member. More...
 
TX_length CVariation_ref_Base::C_E_Consequence::C_Frameshift::GetX_length (void) const
 Get the X_length member data. More...
 
void CVariation_ref_Base::C_E_Consequence::C_Frameshift::SetX_length (TX_length value)
 Assign a value to X_length data member. More...
 
TX_lengthCVariation_ref_Base::C_E_Consequence::C_Frameshift::SetX_length (void)
 Assign a value to X_length data member. More...
 
void CVariation_ref_Base::C_E_Consequence::C_Frameshift::Reset (void)
 Reset the whole object. More...
 
 CVariation_ref_Base::C_E_Consequence::C_Frameshift::C_Frameshift (const C_Frameshift &)
 
C_FrameshiftCVariation_ref_Base::C_E_Consequence::C_Frameshift::operator= (const C_Frameshift &)
 
 CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::C_Loss_of_heterozygosity (void)
 
 CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::~C_Loss_of_heterozygosity (void)
 
 CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::IsSetReference (void) const
 In germline comparison, it will be reference genome assembly (default) or reference/normal population. More...
 
bool CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::CanGetReference (void) const
 Check if it is safe to call GetReference method. More...
 
void CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::ResetReference (void)
 Reset Reference data member. More...
 
const TReferenceCVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::GetReference (void) const
 Get the Reference member data. More...
 
void CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::SetReference (const TReference &value)
 Assign a value to Reference data member. More...
 
void CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::SetReference (TReference &&value)
 
TReferenceCVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::SetReference (void)
 Assign a value to Reference data member. More...
 
bool CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::IsSetTest (void) const
 Name of the testing subject type or the testing tissue. More...
 
bool CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::CanGetTest (void) const
 Check if it is safe to call GetTest method. More...
 
void CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::ResetTest (void)
 Reset Test data member. More...
 
const TTestCVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::GetTest (void) const
 Get the Test member data. More...
 
void CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::SetTest (const TTest &value)
 Assign a value to Test data member. More...
 
void CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::SetTest (TTest &&value)
 
TTestCVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::SetTest (void)
 Assign a value to Test data member. More...
 
void CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::Reset (void)
 Reset the whole object. More...
 
 CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::C_Loss_of_heterozygosity (const C_Loss_of_heterozygosity &)
 
C_Loss_of_heterozygosityCVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::operator= (const C_Loss_of_heterozygosity &)
 
void CVariation_ref_Base::C_E_Consequence::Reset (void)
 Reset the whole object. More...
 
void CVariation_ref_Base::C_E_Consequence::ResetSelection (void)
 Reset the selection (set it to e_not_set). More...
 
E_Choice CVariation_ref_Base::C_E_Consequence::Which (void) const
 Which variant is currently selected. More...
 
void CVariation_ref_Base::C_E_Consequence::CheckSelected (E_Choice index) const
 Verify selection, throw exception if it differs from the expected. More...
 
void CVariation_ref_Base::C_E_Consequence::ThrowInvalidSelection (E_Choice index) const
 Throw 'InvalidSelection' exception. More...
 
static string CVariation_ref_Base::C_E_Consequence::SelectionName (E_Choice index)
 Retrieve selection name (for diagnostic purposes). More...
 
void CVariation_ref_Base::C_E_Consequence::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
 Select the requested variant if needed. More...
 
void CVariation_ref_Base::C_E_Consequence::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
 Select the requested variant if needed, allocating CObject variants from memory pool. More...
 
bool CVariation_ref_Base::C_E_Consequence::IsUnknown (void) const
 Check if variant Unknown is selected. More...
 
void CVariation_ref_Base::C_E_Consequence::SetUnknown (void)
 Select the variant. More...
 
bool CVariation_ref_Base::C_E_Consequence::IsSplicing (void) const
 Check if variant Splicing is selected. More...
 
void CVariation_ref_Base::C_E_Consequence::SetSplicing (void)
 Select the variant. More...
 
bool CVariation_ref_Base::C_E_Consequence::IsNote (void) const
 Check if variant Note is selected. More...
 
const TNoteCVariation_ref_Base::C_E_Consequence::GetNote (void) const
 Get the variant data. More...
 
TNoteCVariation_ref_Base::C_E_Consequence::SetNote (void)
 Select the variant. More...
 
void CVariation_ref_Base::C_E_Consequence::SetNote (const TNote &value)
 Select the variant and set its data. More...
 
bool CVariation_ref_Base::C_E_Consequence::IsVariation (void) const
 Check if variant Variation is selected. More...
 
const TVariationCVariation_ref_Base::C_E_Consequence::GetVariation (void) const
 Get the variant data. More...
 
TVariationCVariation_ref_Base::C_E_Consequence::SetVariation (void)
 Select the variant. More...
 
void CVariation_ref_Base::C_E_Consequence::SetVariation (TVariation &value)
 Select the variant and set its data. More...
 
bool CVariation_ref_Base::C_E_Consequence::IsFrameshift (void) const
 Check if variant Frameshift is selected. More...
 
const TFrameshiftCVariation_ref_Base::C_E_Consequence::GetFrameshift (void) const
 Get the variant data. More...
 
TFrameshiftCVariation_ref_Base::C_E_Consequence::SetFrameshift (void)
 Select the variant. More...
 
void CVariation_ref_Base::C_E_Consequence::SetFrameshift (TFrameshift &value)
 Select the variant and set its data. More...
 
bool CVariation_ref_Base::C_E_Consequence::IsLoss_of_heterozygosity (void) const
 Check if variant Loss_of_heterozygosity is selected. More...
 
const TLoss_of_heterozygosityCVariation_ref_Base::C_E_Consequence::GetLoss_of_heterozygosity (void) const
 Get the variant data. More...
 
TLoss_of_heterozygosityCVariation_ref_Base::C_E_Consequence::SetLoss_of_heterozygosity (void)
 Select the variant. More...
 
void CVariation_ref_Base::C_E_Consequence::SetLoss_of_heterozygosity (TLoss_of_heterozygosity &value)
 Select the variant and set its data. More...
 
 CVariation_ref_Base::C_E_Consequence::C_E_Consequence (const C_E_Consequence &)
 
C_E_ConsequenceCVariation_ref_Base::C_E_Consequence::operator= (const C_E_Consequence &)
 
void CVariation_ref_Base::C_E_Consequence::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
 
 CVariation_ref_Base::C_E_Somatic_origin::C_E_Somatic_origin (void)
 
 CVariation_ref_Base::C_E_Somatic_origin::~C_E_Somatic_origin (void)
 
 CVariation_ref_Base::C_E_Somatic_origin::DECLARE_INTERNAL_TYPE_INFO ()
 
 CVariation_ref_Base::C_E_Somatic_origin::C_Condition::C_Condition (void)
 
 CVariation_ref_Base::C_E_Somatic_origin::C_Condition::~C_Condition (void)
 
 CVariation_ref_Base::C_E_Somatic_origin::C_Condition::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CVariation_ref_Base::C_E_Somatic_origin::C_Condition::IsSetDescription (void) const
 Check if a value has been assigned to Description data member. More...
 
bool CVariation_ref_Base::C_E_Somatic_origin::C_Condition::CanGetDescription (void) const
 Check if it is safe to call GetDescription method. More...
 
void CVariation_ref_Base::C_E_Somatic_origin::C_Condition::ResetDescription (void)
 Reset Description data member. More...
 
const TDescriptionCVariation_ref_Base::C_E_Somatic_origin::C_Condition::GetDescription (void) const
 Get the Description member data. More...
 
void CVariation_ref_Base::C_E_Somatic_origin::C_Condition::SetDescription (const TDescription &value)
 Assign a value to Description data member. More...
 
void CVariation_ref_Base::C_E_Somatic_origin::C_Condition::SetDescription (TDescription &&value)
 
TDescriptionCVariation_ref_Base::C_E_Somatic_origin::C_Condition::SetDescription (void)
 Assign a value to Description data member. More...
 
bool CVariation_ref_Base::C_E_Somatic_origin::C_Condition::IsSetObject_id (void) const
 reference to BioTerm / other descriptive database Check if a value has been assigned to Object_id data member. More...
 
bool CVariation_ref_Base::C_E_Somatic_origin::C_Condition::CanGetObject_id (void) const
 Check if it is safe to call GetObject_id method. More...
 
void CVariation_ref_Base::C_E_Somatic_origin::C_Condition::ResetObject_id (void)
 Reset Object_id data member. More...
 
const TObject_idCVariation_ref_Base::C_E_Somatic_origin::C_Condition::GetObject_id (void) const
 Get the Object_id member data. More...
 
TObject_idCVariation_ref_Base::C_E_Somatic_origin::C_Condition::SetObject_id (void)
 Assign a value to Object_id data member. More...
 
void CVariation_ref_Base::C_E_Somatic_origin::C_Condition::Reset (void)
 Reset the whole object. More...
 
 CVariation_ref_Base::C_E_Somatic_origin::C_Condition::C_Condition (const C_Condition &)
 
C_ConditionCVariation_ref_Base::C_E_Somatic_origin::C_Condition::operator= (const C_Condition &)
 
bool CVariation_ref_Base::C_E_Somatic_origin::IsSetSource (void) const
 description of the somatic origin itself Check if a value has been assigned to Source data member. More...
 
bool CVariation_ref_Base::C_E_Somatic_origin::CanGetSource (void) const
 Check if it is safe to call GetSource method. More...
 
void CVariation_ref_Base::C_E_Somatic_origin::ResetSource (void)
 Reset Source data member. More...
 
const TSourceCVariation_ref_Base::C_E_Somatic_origin::GetSource (void) const
 Get the Source member data. More...
 
void CVariation_ref_Base::C_E_Somatic_origin::SetSource (TSource &value)
 Assign a value to Source data member. More...
 
TSourceCVariation_ref_Base::C_E_Somatic_origin::SetSource (void)
 Assign a value to Source data member. More...
 
bool CVariation_ref_Base::C_E_Somatic_origin::IsSetCondition (void) const
 Check if a value has been assigned to Condition data member. More...
 
bool CVariation_ref_Base::C_E_Somatic_origin::CanGetCondition (void) const
 Check if it is safe to call GetCondition method. More...
 
void CVariation_ref_Base::C_E_Somatic_origin::ResetCondition (void)
 Reset Condition data member. More...
 
const TConditionCVariation_ref_Base::C_E_Somatic_origin::GetCondition (void) const
 Get the Condition member data. More...
 
void CVariation_ref_Base::C_E_Somatic_origin::SetCondition (TCondition &value)
 Assign a value to Condition data member. More...
 
TConditionCVariation_ref_Base::C_E_Somatic_origin::SetCondition (void)
 Assign a value to Condition data member. More...
 
void CVariation_ref_Base::C_E_Somatic_origin::Reset (void)
 Reset the whole object. More...
 
 CVariation_ref_Base::C_E_Somatic_origin::C_E_Somatic_origin (const C_E_Somatic_origin &)
 
C_E_Somatic_originCVariation_ref_Base::C_E_Somatic_origin::operator= (const C_E_Somatic_origin &)
 
bool CVariation_ref_Base::IsSetId (void) const
 ids (i.e., SNP rsid / ssid, dbVar nsv/nssv) expected values include 'dbSNP|rs12334', 'dbSNP|ss12345', 'dbVar|nsv1' More...
 
bool CVariation_ref_Base::CanGetId (void) const
 Check if it is safe to call GetId method. More...
 
void CVariation_ref_Base::ResetId (void)
 Reset Id data member. More...
 
const TIdCVariation_ref_Base::GetId (void) const
 Get the Id member data. More...
 
void CVariation_ref_Base::SetId (TId &value)
 Assign a value to Id data member. More...
 
TIdCVariation_ref_Base::SetId (void)
 Assign a value to Id data member. More...
 
bool CVariation_ref_Base::IsSetParent_id (void) const
 Check if a value has been assigned to Parent_id data member. More...
 
bool CVariation_ref_Base::CanGetParent_id (void) const
 Check if it is safe to call GetParent_id method. More...
 
void CVariation_ref_Base::ResetParent_id (void)
 Reset Parent_id data member. More...
 
const TParent_idCVariation_ref_Base::GetParent_id (void) const
 Get the Parent_id member data. More...
 
void CVariation_ref_Base::SetParent_id (TParent_id &value)
 Assign a value to Parent_id data member. More...
 
TParent_idCVariation_ref_Base::SetParent_id (void)
 Assign a value to Parent_id data member. More...
 
bool CVariation_ref_Base::IsSetSample_id (void) const
 Check if a value has been assigned to Sample_id data member. More...
 
bool CVariation_ref_Base::CanGetSample_id (void) const
 Check if it is safe to call GetSample_id method. More...
 
void CVariation_ref_Base::ResetSample_id (void)
 Reset Sample_id data member. More...
 
const TSample_idCVariation_ref_Base::GetSample_id (void) const
 Get the Sample_id member data. More...
 
void CVariation_ref_Base::SetSample_id (TSample_id &value)
 Assign a value to Sample_id data member. More...
 
TSample_idCVariation_ref_Base::SetSample_id (void)
 Assign a value to Sample_id data member. More...
 
bool CVariation_ref_Base::IsSetOther_ids (void) const
 Check if a value has been assigned to Other_ids data member. More...
 
bool CVariation_ref_Base::CanGetOther_ids (void) const
 Check if it is safe to call GetOther_ids method. More...
 
void CVariation_ref_Base::ResetOther_ids (void)
 Reset Other_ids data member. More...
 
const TOther_idsCVariation_ref_Base::GetOther_ids (void) const
 Get the Other_ids member data. More...
 
TOther_idsCVariation_ref_Base::SetOther_ids (void)
 Assign a value to Other_ids data member. More...
 
bool CVariation_ref_Base::IsSetName (void) const
 names and synonyms some variants have well-known canonical names and possible accepted synonyms Check if a value has been assigned to Name data member. More...
 
bool CVariation_ref_Base::CanGetName (void) const
 Check if it is safe to call GetName method. More...
 
void CVariation_ref_Base::ResetName (void)
 Reset Name data member. More...
 
const TNameCVariation_ref_Base::GetName (void) const
 Get the Name member data. More...
 
void CVariation_ref_Base::SetName (const TName &value)
 Assign a value to Name data member. More...
 
void CVariation_ref_Base::SetName (TName &&value)
 
TNameCVariation_ref_Base::SetName (void)
 Assign a value to Name data member. More...
 
bool CVariation_ref_Base::IsSetSynonyms (void) const
 Check if a value has been assigned to Synonyms data member. More...
 
bool CVariation_ref_Base::CanGetSynonyms (void) const
 Check if it is safe to call GetSynonyms method. More...
 
void CVariation_ref_Base::ResetSynonyms (void)
 Reset Synonyms data member. More...
 
const TSynonymsCVariation_ref_Base::GetSynonyms (void) const
 Get the Synonyms member data. More...
 
TSynonymsCVariation_ref_Base::SetSynonyms (void)
 Assign a value to Synonyms data member. More...
 
bool CVariation_ref_Base::IsSetDescription (void) const
 tag for comment and descriptions Check if a value has been assigned to Description data member. More...
 
bool CVariation_ref_Base::CanGetDescription (void) const
 Check if it is safe to call GetDescription method. More...
 
void CVariation_ref_Base::ResetDescription (void)
 Reset Description data member. More...
 
const TDescriptionCVariation_ref_Base::GetDescription (void) const
 Get the Description member data. More...
 
void CVariation_ref_Base::SetDescription (const TDescription &value)
 Assign a value to Description data member. More...
 
void CVariation_ref_Base::SetDescription (TDescription &&value)
 
TDescriptionCVariation_ref_Base::SetDescription (void)
 Assign a value to Description data member. More...
 
bool CVariation_ref_Base::IsSetPhenotype (void) const
 phenotype Check if a value has been assigned to Phenotype data member. More...
 
bool CVariation_ref_Base::CanGetPhenotype (void) const
 Check if it is safe to call GetPhenotype method. More...
 
void CVariation_ref_Base::ResetPhenotype (void)
 Reset Phenotype data member. More...
 
const TPhenotypeCVariation_ref_Base::GetPhenotype (void) const
 Get the Phenotype member data. More...
 
TPhenotypeCVariation_ref_Base::SetPhenotype (void)
 Assign a value to Phenotype data member. More...
 
bool CVariation_ref_Base::IsSetMethod (void) const
 Check if a value has been assigned to Method data member. More...
 
bool CVariation_ref_Base::CanGetMethod (void) const
 Check if it is safe to call GetMethod method. More...
 
void CVariation_ref_Base::ResetMethod (void)
 Reset Method data member. More...
 
const TMethodCVariation_ref_Base::GetMethod (void) const
 Get the Method member data. More...
 
TMethodCVariation_ref_Base::SetMethod (void)
 Assign a value to Method data member. More...
 
bool CVariation_ref_Base::IsSetPopulation_data (void) const
 Note about SNP representation and pretinent fields: allele-frequency, population, quality-codes: The case of multiple alleles for a SNP would be described by parent-feature of type Variation-set.diff-alleles, where the child features of type Variation-inst, all at the same location, would describe individual alleles. More...
 
bool CVariation_ref_Base::CanGetPopulation_data (void) const
 Check if it is safe to call GetPopulation_data method. More...
 
void CVariation_ref_Base::ResetPopulation_data (void)
 Reset Population_data data member. More...
 
const TPopulation_dataCVariation_ref_Base::GetPopulation_data (void) const
 Get the Population_data member data. More...
 
TPopulation_dataCVariation_ref_Base::SetPopulation_data (void)
 Assign a value to Population_data data member. More...
 
bool CVariation_ref_Base::IsSetVariant_prop (void) const
 variant properties bit fields Check if a value has been assigned to Variant_prop data member. More...
 
bool CVariation_ref_Base::CanGetVariant_prop (void) const
 Check if it is safe to call GetVariant_prop method. More...
 
void CVariation_ref_Base::ResetVariant_prop (void)
 Reset Variant_prop data member. More...
 
const TVariant_propCVariation_ref_Base::GetVariant_prop (void) const
 Get the Variant_prop member data. More...
 
void CVariation_ref_Base::SetVariant_prop (TVariant_prop &value)
 Assign a value to Variant_prop data member. More...
 
TVariant_propCVariation_ref_Base::SetVariant_prop (void)
 Assign a value to Variant_prop data member. More...
 
bool CVariation_ref_Base::IsSetValidated (void) const
 has this variant been validated? DEPRECATED: new field = VariantProperties.other-validation Check if a value has been assigned to Validated data member. More...
 
bool CVariation_ref_Base::CanGetValidated (void) const
 Check if it is safe to call GetValidated method. More...
 
void CVariation_ref_Base::ResetValidated (void)
 Reset Validated data member. More...
 
TValidated CVariation_ref_Base::GetValidated (void) const
 Get the Validated member data. More...
 
void CVariation_ref_Base::SetValidated (TValidated value)
 Assign a value to Validated data member. More...
 
TValidatedCVariation_ref_Base::SetValidated (void)
 Assign a value to Validated data member. More...
 
bool CVariation_ref_Base::IsSetClinical_test (void) const
 link-outs to GeneTests database DEPRECATED - do not use Check if a value has been assigned to Clinical_test data member. More...
 
bool CVariation_ref_Base::CanGetClinical_test (void) const
 Check if it is safe to call GetClinical_test method. More...
 
void CVariation_ref_Base::ResetClinical_test (void)
 Reset Clinical_test data member. More...
 
const TClinical_testCVariation_ref_Base::GetClinical_test (void) const
 Get the Clinical_test member data. More...
 
TClinical_testCVariation_ref_Base::SetClinical_test (void)
 Assign a value to Clinical_test data member. More...
 
bool CVariation_ref_Base::IsSetAllele_origin (void) const
 Check if a value has been assigned to Allele_origin data member. More...
 
bool CVariation_ref_Base::CanGetAllele_origin (void) const
 Check if it is safe to call GetAllele_origin method. More...
 
void CVariation_ref_Base::ResetAllele_origin (void)
 Reset Allele_origin data member. More...
 
TAllele_origin CVariation_ref_Base::GetAllele_origin (void) const
 Get the Allele_origin member data. More...
 
void CVariation_ref_Base::SetAllele_origin (TAllele_origin value)
 Assign a value to Allele_origin data member. More...
 
TAllele_originCVariation_ref_Base::SetAllele_origin (void)
 Assign a value to Allele_origin data member. More...
 
bool CVariation_ref_Base::IsSetAllele_state (void) const
 Check if a value has been assigned to Allele_state data member. More...
 
bool CVariation_ref_Base::CanGetAllele_state (void) const
 Check if it is safe to call GetAllele_state method. More...
 
void CVariation_ref_Base::ResetAllele_state (void)
 Reset Allele_state data member. More...
 
TAllele_state CVariation_ref_Base::GetAllele_state (void) const
 Get the Allele_state member data. More...
 
void CVariation_ref_Base::SetAllele_state (TAllele_state value)
 Assign a value to Allele_state data member. More...
 
TAllele_stateCVariation_ref_Base::SetAllele_state (void)
 Assign a value to Allele_state data member. More...
 
bool CVariation_ref_Base::IsSetAllele_frequency (void) const
 NOTE: 'allele-frequency' here refers to the minor allele frequency of the default population DEPRECATED: new field = VariantProperties.allele-frequency Check if a value has been assigned to Allele_frequency data member. More...
 
bool CVariation_ref_Base::CanGetAllele_frequency (void) const
 Check if it is safe to call GetAllele_frequency method. More...
 
void CVariation_ref_Base::ResetAllele_frequency (void)
 Reset Allele_frequency data member. More...
 
TAllele_frequency CVariation_ref_Base::GetAllele_frequency (void) const
 Get the Allele_frequency member data. More...
 
void CVariation_ref_Base::SetAllele_frequency (TAllele_frequency value)
 Assign a value to Allele_frequency data member. More...
 
TAllele_frequencyCVariation_ref_Base::SetAllele_frequency (void)
 Assign a value to Allele_frequency data member. More...
 
bool CVariation_ref_Base::IsSetIs_ancestral_allele (void) const
 is this variant the ancestral allele? DEPRECATED: new field = VariantProperties.is-ancestral-allele Check if a value has been assigned to Is_ancestral_allele data member. More...
 
bool CVariation_ref_Base::CanGetIs_ancestral_allele (void) const
 Check if it is safe to call GetIs_ancestral_allele method. More...
 
void CVariation_ref_Base::ResetIs_ancestral_allele (void)
 Reset Is_ancestral_allele data member. More...
 
TIs_ancestral_allele CVariation_ref_Base::GetIs_ancestral_allele (void) const
 Get the Is_ancestral_allele member data. More...
 
void CVariation_ref_Base::SetIs_ancestral_allele (TIs_ancestral_allele value)
 Assign a value to Is_ancestral_allele data member. More...
 
TIs_ancestral_alleleCVariation_ref_Base::SetIs_ancestral_allele (void)
 Assign a value to Is_ancestral_allele data member. More...
 
bool CVariation_ref_Base::IsSetPub (void) const
 publication support. More...
 
bool CVariation_ref_Base::CanGetPub (void) const
 Check if it is safe to call GetPub method. More...
 
void CVariation_ref_Base::ResetPub (void)
 Reset Pub data member. More...
 
const TPubCVariation_ref_Base::GetPub (void) const
 Get the Pub member data. More...
 
void CVariation_ref_Base::SetPub (TPub &value)
 Assign a value to Pub data member. More...
 
TPubCVariation_ref_Base::SetPub (void)
 Assign a value to Pub data member. More...
 
bool CVariation_ref_Base::IsSetData (void) const
 Check if a value has been assigned to Data data member. More...
 
bool CVariation_ref_Base::CanGetData (void) const
 Check if it is safe to call GetData method. More...
 
void CVariation_ref_Base::ResetData (void)
 Reset Data data member. More...
 
const TDataCVariation_ref_Base::GetData (void) const
 Get the Data member data. More...
 
void CVariation_ref_Base::SetData (TData &value)
 Assign a value to Data data member. More...
 
TDataCVariation_ref_Base::SetData (void)
 Assign a value to Data data member. More...
 
bool CVariation_ref_Base::IsSetConsequence (void) const
 Check if a value has been assigned to Consequence data member. More...
 
bool CVariation_ref_Base::CanGetConsequence (void) const
 Check if it is safe to call GetConsequence method. More...
 
void CVariation_ref_Base::ResetConsequence (void)
 Reset Consequence data member. More...
 
const TConsequenceCVariation_ref_Base::GetConsequence (void) const
 Get the Consequence member data. More...
 
TConsequenceCVariation_ref_Base::SetConsequence (void)
 Assign a value to Consequence data member. More...
 
bool CVariation_ref_Base::IsSetLocation (void) const
 Observed location, if different from the parent set or feature.location. More...
 
bool CVariation_ref_Base::CanGetLocation (void) const
 Check if it is safe to call GetLocation method. More...
 
void CVariation_ref_Base::ResetLocation (void)
 Reset Location data member. More...
 
const TLocationCVariation_ref_Base::GetLocation (void) const
 Get the Location member data. More...
 
void CVariation_ref_Base::SetLocation (TLocation &value)
 Assign a value to Location data member. More...
 
TLocationCVariation_ref_Base::SetLocation (void)
 Assign a value to Location data member. More...
 
bool CVariation_ref_Base::IsSetExt_locs (void) const
 reference other locs, e.g. More...
 
bool CVariation_ref_Base::CanGetExt_locs (void) const
 Check if it is safe to call GetExt_locs method. More...
 
void CVariation_ref_Base::ResetExt_locs (void)
 Reset Ext_locs data member. More...
 
const TExt_locsCVariation_ref_Base::GetExt_locs (void) const
 Get the Ext_locs member data. More...
 
TExt_locsCVariation_ref_Base::SetExt_locs (void)
 Assign a value to Ext_locs data member. More...
 
bool CVariation_ref_Base::IsSetExt (void) const
 DEPRECATED - do not use; use Seq-feat.exts instead Check if a value has been assigned to Ext data member. More...
 
bool CVariation_ref_Base::CanGetExt (void) const
 Check if it is safe to call GetExt method. More...
 
void CVariation_ref_Base::ResetExt (void)
 Reset Ext data member. More...
 
const TExtCVariation_ref_Base::GetExt (void) const
 Get the Ext member data. More...
 
void CVariation_ref_Base::SetExt (TExt &value)
 Assign a value to Ext data member. More...
 
TExtCVariation_ref_Base::SetExt (void)
 Assign a value to Ext data member. More...
 
bool CVariation_ref_Base::IsSetSomatic_origin (void) const
 Check if a value has been assigned to Somatic_origin data member. More...
 
bool CVariation_ref_Base::CanGetSomatic_origin (void) const
 Check if it is safe to call GetSomatic_origin method. More...
 
void CVariation_ref_Base::ResetSomatic_origin (void)
 Reset Somatic_origin data member. More...
 
const TSomatic_originCVariation_ref_Base::GetSomatic_origin (void) const
 Get the Somatic_origin member data. More...
 
TSomatic_originCVariation_ref_Base::SetSomatic_origin (void)
 Assign a value to Somatic_origin data member. More...
 
virtual void CVariation_ref_Base::Reset (void)
 Reset the whole object. More...
 
 CVariation_ref_Base::CVariation_ref_Base (const CVariation_ref_Base &)
 
CVariation_ref_BaseCVariation_ref_Base::operator= (const CVariation_ref_Base &)
 

Variables

E_Choice CDelta_item_Base::C_Seq::m_choice
 
static const char *const CDelta_item_Base::C_Seq::sm_SelectionNames []
 
NCBI_NS_NCBI::CSerialObject *   CDelta_item_Base::C_Seq::m_object
 
union {
   NCBI_NS_NCBI::CSerialObject *   CDelta_item_Base::C_Seq::m_object
 
}; 
 
Uint4 CDelta_item_Base::m_set_State [1]
 
CRef< TSeqCDelta_item_Base::m_Seq
 
int CDelta_item_Base::m_Multiplier
 
CRef< TMultiplier_fuzzCDelta_item_Base::m_Multiplier_fuzz
 
int CDelta_item_Base::m_Action
 
Uint4 CExt_loc_Base::m_set_State [1]
 
CRef< TIdCExt_loc_Base::m_Id
 
CRef< TLocationCExt_loc_Base::m_Location
 
Uint4 CPhenotype_Base::m_set_State [1]
 
string CPhenotype_Base::m_Source
 
string CPhenotype_Base::m_Term
 
list< CRef< CDbtag > > CPhenotype_Base::m_Xref
 
int CPhenotype_Base::m_Clinical_significance
 
Uint4 CPopulation_data_Base::m_set_State [1]
 
string CPopulation_data_Base::m_Population
 
double CPopulation_data_Base::m_Genotype_frequency
 
int CPopulation_data_Base::m_Chromosomes_tested
 
list< CRef< CObject_id > > CPopulation_data_Base::m_Sample_ids
 
double CPopulation_data_Base::m_Allele_frequency
 
int CPopulation_data_Base::m_Flags
 
Uint4 CVariantProperties_Base::m_set_State [1]
 
int CVariantProperties_Base::m_Version
 
int CVariantProperties_Base::m_Resource_link
 
int CVariantProperties_Base::m_Gene_location
 
int CVariantProperties_Base::m_Effect
 
int CVariantProperties_Base::m_Mapping
 
int CVariantProperties_Base::m_Map_weight
 
int CVariantProperties_Base::m_Frequency_based_validation
 
int CVariantProperties_Base::m_Genotype
 
list< intCVariantProperties_Base::m_Project_data
 
int CVariantProperties_Base::m_Quality_check
 
int CVariantProperties_Base::m_Confidence
 
bool CVariantProperties_Base::m_Other_validation
 
int CVariantProperties_Base::m_Allele_origin
 
int CVariantProperties_Base::m_Allele_state
 
double CVariantProperties_Base::m_Allele_frequency
 
bool CVariantProperties_Base::m_Is_ancestral_allele
 
Uint4 CVariation_inst_Base::m_set_State [1]
 
int CVariation_inst_Base::m_Type
 
list< CRef< CDelta_item > > CVariation_inst_Base::m_Delta
 
int CVariation_inst_Base::m_Observation
 
Uint4 CVariation_ref_Base::C_Data::C_Set::m_set_State [1]
 
int CVariation_ref_Base::C_Data::C_Set::m_Type
 
list< CRef< CVariation_ref > > CVariation_ref_Base::C_Data::C_Set::m_Variations
 
string CVariation_ref_Base::C_Data::C_Set::m_Name
 
E_Choice CVariation_ref_Base::C_Data::m_choice
 
static const char *const CVariation_ref_Base::C_Data::sm_SelectionNames []
 
NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CVariation_ref_Base::C_Data::m_string
 
NCBI_NS_NCBI::CSerialObject *   CVariation_ref_Base::C_Data::m_object
 
union {
   NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CVariation_ref_Base::C_Data::m_string
 
   NCBI_NS_NCBI::CSerialObject *   CVariation_ref_Base::C_Data::m_object
 
}; 
 
Uint4 CVariation_ref_Base::C_E_Consequence::C_Frameshift::m_set_State [1]
 
int CVariation_ref_Base::C_E_Consequence::C_Frameshift::m_Phase
 
int CVariation_ref_Base::C_E_Consequence::C_Frameshift::m_X_length
 
Uint4 CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::m_set_State [1]
 
string CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::m_Reference
 
string CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::m_Test
 
E_Choice CVariation_ref_Base::C_E_Consequence::m_choice
 
static const char *const CVariation_ref_Base::C_E_Consequence::sm_SelectionNames []
 
NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CVariation_ref_Base::C_E_Consequence::m_string
 
NCBI_NS_NCBI::CSerialObject *   CVariation_ref_Base::C_E_Consequence::m_object
 
union {
   NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CVariation_ref_Base::C_E_Consequence::m_string
 
   NCBI_NS_NCBI::CSerialObject *   CVariation_ref_Base::C_E_Consequence::m_object
 
}; 
 
Uint4 CVariation_ref_Base::C_E_Somatic_origin::C_Condition::m_set_State [1]
 
string CVariation_ref_Base::C_E_Somatic_origin::C_Condition::m_Description
 
list< CRef< CDbtag > > CVariation_ref_Base::C_E_Somatic_origin::C_Condition::m_Object_id
 
Uint4 CVariation_ref_Base::C_E_Somatic_origin::m_set_State [1]
 
CRef< TSourceCVariation_ref_Base::C_E_Somatic_origin::m_Source
 
CRef< TConditionCVariation_ref_Base::C_E_Somatic_origin::m_Condition
 
Uint4 CVariation_ref_Base::m_set_State [2]
 
CRef< TIdCVariation_ref_Base::m_Id
 
CRef< TParent_idCVariation_ref_Base::m_Parent_id
 
CRef< TSample_idCVariation_ref_Base::m_Sample_id
 
list< CRef< CDbtag > > CVariation_ref_Base::m_Other_ids
 
string CVariation_ref_Base::m_Name
 
list< stringCVariation_ref_Base::m_Synonyms
 
string CVariation_ref_Base::m_Description
 
list< CRef< CPhenotype > > CVariation_ref_Base::m_Phenotype
 
list< intCVariation_ref_Base::m_Method
 
list< CRef< CPopulation_data > > CVariation_ref_Base::m_Population_data
 
CRef< TVariant_propCVariation_ref_Base::m_Variant_prop
 
bool CVariation_ref_Base::m_Validated
 
list< CRef< CDbtag > > CVariation_ref_Base::m_Clinical_test
 
int CVariation_ref_Base::m_Allele_origin
 
int CVariation_ref_Base::m_Allele_state
 
double CVariation_ref_Base::m_Allele_frequency
 
bool CVariation_ref_Base::m_Is_ancestral_allele
 
CRef< TPubCVariation_ref_Base::m_Pub
 
CRef< TDataCVariation_ref_Base::m_Data
 
list< CRef< C_E_Consequence > > CVariation_ref_Base::m_Consequence
 
CRef< TLocationCVariation_ref_Base::m_Location
 
list< CRef< CExt_loc > > CVariation_ref_Base::m_Ext_locs
 
CRef< TExtCVariation_ref_Base::m_Ext
 
list< CRef< C_E_Somatic_origin > > CVariation_ref_Base::m_Somatic_origin
 

Detailed Description

Typedef Documentation

◆ C_E

Definition at line 1299 of file Variation_ref_.hpp.

◆ TAction

Definition at line 263 of file Delta_item_.hpp.

◆ TAllele_frequency [1/3]

Definition at line 106 of file Population_data_.hpp.

◆ TAllele_frequency [2/3]

Definition at line 290 of file VariantProperties_.hpp.

◆ TAllele_frequency [3/3]

Definition at line 1295 of file Variation_ref_.hpp.

◆ TAllele_origin [1/2]

Definition at line 288 of file VariantProperties_.hpp.

◆ TAllele_origin [2/2]

Definition at line 1293 of file Variation_ref_.hpp.

◆ TAllele_state [1/2]

Definition at line 289 of file VariantProperties_.hpp.

◆ TAllele_state [2/2]

Definition at line 1294 of file Variation_ref_.hpp.

◆ TChromosomes_tested

Definition at line 104 of file Population_data_.hpp.

◆ TClinical_significance

Definition at line 109 of file Phenotype_.hpp.

◆ TClinical_test

Definition at line 1292 of file Variation_ref_.hpp.

◆ TCondition

Definition at line 1177 of file Variation_ref_.hpp.

◆ TConfidence

Definition at line 286 of file VariantProperties_.hpp.

◆ TConsequence

Definition at line 1300 of file Variation_ref_.hpp.

◆ TData

Definition at line 1298 of file Variation_ref_.hpp.

◆ TDelta

Definition at line 131 of file Variation_inst_.hpp.

◆ TDescription [1/2]

Definition at line 1077 of file Variation_ref_.hpp.

◆ TDescription [2/2]

Definition at line 1286 of file Variation_ref_.hpp.

◆ TEffect

Definition at line 279 of file VariantProperties_.hpp.

◆ TExt

Definition at line 1303 of file Variation_ref_.hpp.

◆ TExt_locs

Definition at line 1302 of file Variation_ref_.hpp.

◆ TFlags

Definition at line 107 of file Population_data_.hpp.

◆ TFrameshift

Definition at line 891 of file Variation_ref_.hpp.

◆ TFrequency_based_validation

Definition at line 282 of file VariantProperties_.hpp.

◆ TGene_location

Definition at line 278 of file VariantProperties_.hpp.

◆ TGenotype

Definition at line 283 of file VariantProperties_.hpp.

◆ TGenotype_frequency

Definition at line 103 of file Population_data_.hpp.

◆ TId [1/2]

Definition at line 86 of file Ext_loc_.hpp.

◆ TId [2/2]

Definition at line 1280 of file Variation_ref_.hpp.

◆ TInstance

Definition at line 426 of file Variation_ref_.hpp.

◆ TIs_ancestral_allele [1/2]

Definition at line 291 of file VariantProperties_.hpp.

◆ TIs_ancestral_allele [2/2]

Definition at line 1296 of file Variation_ref_.hpp.

◆ TLiteral

Definition at line 164 of file Delta_item_.hpp.

◆ TLoc

Definition at line 165 of file Delta_item_.hpp.

◆ TLocation [1/2]

Definition at line 87 of file Ext_loc_.hpp.

◆ TLocation [2/2]

Definition at line 1301 of file Variation_ref_.hpp.

◆ TLoss_of_heterozygosity

Definition at line 892 of file Variation_ref_.hpp.

◆ TMap_weight

Definition at line 281 of file VariantProperties_.hpp.

◆ TMapping

Definition at line 280 of file VariantProperties_.hpp.

◆ TmemberIndex [1/12]

Definition at line 273 of file Delta_item_.hpp.

◆ TmemberIndex [2/12]

Definition at line 95 of file Ext_loc_.hpp.

◆ TmemberIndex [3/12]

Definition at line 119 of file Phenotype_.hpp.

◆ TmemberIndex [4/12]

Definition at line 119 of file Population_data_.hpp.

◆ TmemberIndex [5/12]

Definition at line 313 of file VariantProperties_.hpp.

◆ TmemberIndex [6/12]

Definition at line 141 of file Variation_inst_.hpp.

◆ TmemberIndex [7/12]

Definition at line 235 of file Variation_ref_.hpp.

◆ TmemberIndex [8/12]

Definition at line 606 of file Variation_ref_.hpp.

◆ TmemberIndex [9/12]

Definition at line 726 of file Variation_ref_.hpp.

◆ TmemberIndex [10/12]

Definition at line 1086 of file Variation_ref_.hpp.

◆ TmemberIndex [11/12]

Definition at line 1185 of file Variation_ref_.hpp.

◆ TmemberIndex [12/12]

Definition at line 1334 of file Variation_ref_.hpp.

◆ TMethod

Definition at line 1288 of file Variation_ref_.hpp.

◆ TMultiplier

Definition at line 261 of file Delta_item_.hpp.

◆ TMultiplier_fuzz

Definition at line 262 of file Delta_item_.hpp.

◆ TName [1/2]

Definition at line 226 of file Variation_ref_.hpp.

◆ TName [2/2]

Definition at line 1284 of file Variation_ref_.hpp.

◆ TNote [1/2]

Definition at line 425 of file Variation_ref_.hpp.

◆ TNote [2/2]

Definition at line 889 of file Variation_ref_.hpp.

◆ TObject_id

Definition at line 1078 of file Variation_ref_.hpp.

◆ TObservation

Definition at line 132 of file Variation_inst_.hpp.

◆ TOther_ids

Definition at line 1283 of file Variation_ref_.hpp.

◆ TOther_validation

Definition at line 287 of file VariantProperties_.hpp.

◆ Tparent [1/19]

Definition at line 76 of file Delta_item_.hpp.

◆ Tparent [2/19]

Definition at line 93 of file Delta_item_.hpp.

◆ Tparent [3/19]

Definition at line 67 of file Ext_loc.hpp.

◆ Tparent [4/19]

Definition at line 75 of file Ext_loc_.hpp.

◆ Tparent [5/19]

Definition at line 67 of file Phenotype.hpp.

◆ Tparent [6/19]

Definition at line 79 of file Phenotype_.hpp.

◆ Tparent [7/19]

Definition at line 67 of file Population_data.hpp.

◆ Tparent [8/19]

Definition at line 79 of file Population_data_.hpp.

◆ Tparent [9/19]

Definition at line 116 of file VariantProperties_.hpp.

◆ Tparent [10/19]

Definition at line 67 of file Variation_inst.hpp.

◆ Tparent [11/19]

Definition at line 79 of file Variation_inst_.hpp.

◆ Tparent [12/19]

Definition at line 90 of file Variation_ref_.hpp.

◆ Tparent [13/19]

Definition at line 177 of file Variation_ref_.hpp.

◆ Tparent [14/19]

Definition at line 196 of file Variation_ref_.hpp.

◆ Tparent [15/19]

Definition at line 568 of file Variation_ref_.hpp.

◆ Tparent [16/19]

Definition at line 586 of file Variation_ref_.hpp.

◆ Tparent [17/19]

Definition at line 706 of file Variation_ref_.hpp.

◆ Tparent [18/19]

Definition at line 1048 of file Variation_ref_.hpp.

◆ Tparent [19/19]

Definition at line 1066 of file Variation_ref_.hpp.

◆ TParent_id

Definition at line 1281 of file Variation_ref_.hpp.

◆ TPhase

Definition at line 597 of file Variation_ref_.hpp.

◆ TPhenotype

Definition at line 1287 of file Variation_ref_.hpp.

◆ TPopulation

Definition at line 102 of file Population_data_.hpp.

◆ TPopulation_data

Definition at line 1289 of file Variation_ref_.hpp.

◆ TProject_data

Definition at line 284 of file VariantProperties_.hpp.

◆ TPub

Definition at line 1297 of file Variation_ref_.hpp.

◆ TQuality_check

Definition at line 285 of file VariantProperties_.hpp.

◆ TReference

Definition at line 717 of file Variation_ref_.hpp.

◆ TResource_link

Definition at line 277 of file VariantProperties_.hpp.

◆ TSample_id

Definition at line 1282 of file Variation_ref_.hpp.

◆ TSample_ids

Definition at line 105 of file Population_data_.hpp.

◆ TSeq

Definition at line 260 of file Delta_item_.hpp.

◆ TSet

Definition at line 427 of file Variation_ref_.hpp.

◆ TSomatic_origin

Definition at line 1304 of file Variation_ref_.hpp.

◆ TSource [1/2]

Definition at line 106 of file Phenotype_.hpp.

◆ TSource [2/2]

Definition at line 1176 of file Variation_ref_.hpp.

◆ TSynonyms

Definition at line 1285 of file Variation_ref_.hpp.

◆ TTerm

Definition at line 107 of file Phenotype_.hpp.

◆ TTest

Definition at line 718 of file Variation_ref_.hpp.

◆ TType [1/2]

Definition at line 130 of file Variation_inst_.hpp.

◆ TType [2/2]

Definition at line 224 of file Variation_ref_.hpp.

◆ TValidated

Definition at line 1291 of file Variation_ref_.hpp.

◆ TVariant_prop

Definition at line 1290 of file Variation_ref_.hpp.

◆ TVariation

Definition at line 890 of file Variation_ref_.hpp.

◆ TVariations

Definition at line 225 of file Variation_ref_.hpp.

◆ TVersion

Definition at line 276 of file VariantProperties_.hpp.

◆ TX_length

Definition at line 598 of file Variation_ref_.hpp.

◆ TXref

typedef list< CRef< CDbtag > > CPhenotype_Base::TXref

Definition at line 108 of file Phenotype_.hpp.

Enumeration Type Documentation

◆ E_Choice [1/3]

Choice variants.

Enumerator
e_not_set 

No variant selected.

e_Literal 
e_Loc 
e_This 

same location as variation-ref itself

Definition at line 105 of file Delta_item_.hpp.

◆ E_Choice [2/3]

Choice variants.

Enumerator
e_not_set 

No variant selected.

e_Unknown 
e_Note 

free-form

e_Uniparental_disomy 
e_Instance 

actual sequence-edit at feat.location

e_Set 
e_Complex 

variant is a complex and undescribed change at the location This type of variant is known to occur in dbVar submissions

Definition at line 363 of file Variation_ref_.hpp.

◆ E_Choice [3/3]

Choice variants.

Enumerator
e_not_set 

No variant selected.

e_Unknown 
e_Splicing 

some effect on splicing

e_Note 

freeform

e_Variation 

Describe resulting variation in the product, e.g. missense, nonsense, silent, neutral, etc in a protein, that arises from THIS variation.

e_Frameshift 
e_Loss_of_heterozygosity 

Definition at line 827 of file Variation_ref_.hpp.

◆ E_ChoiceStopper [1/3]

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice 

== e_This+1

Definition at line 112 of file Delta_item_.hpp.

◆ E_ChoiceStopper [2/3]

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice 

== e_Complex+1

Definition at line 373 of file Variation_ref_.hpp.

◆ E_ChoiceStopper [3/3]

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice 

== e_Loss_of_heterozygosity+1

Definition at line 837 of file Variation_ref_.hpp.

◆ E_memberIndex [1/12]

Enumerator
e__allMandatory 
e_seq 
e_multiplier 
e_multiplier_fuzz 
e_action 

Definition at line 266 of file Delta_item_.hpp.

◆ E_memberIndex [2/12]

Enumerator
e__allMandatory 
e_id 
e_location 

Definition at line 90 of file Ext_loc_.hpp.

◆ E_memberIndex [3/12]

Enumerator
e__allMandatory 
e_source 
e_term 
e_xref 
e_clinical_significance 

Definition at line 112 of file Phenotype_.hpp.

◆ E_memberIndex [4/12]

Enumerator
e__allMandatory 
e_population 
e_genotype_frequency 
e_chromosomes_tested 
e_sample_ids 
e_allele_frequency 
e_flags 

Definition at line 110 of file Population_data_.hpp.

◆ E_memberIndex [5/12]

Enumerator
e__allMandatory 
e_version 
e_resource_link 
e_gene_location 
e_effect 
e_mapping 
e_map_weight 
e_frequency_based_validation 
e_genotype 
e_project_data 
e_quality_check 
e_confidence 
e_other_validation 
e_allele_origin 
e_allele_state 
e_allele_frequency 
e_is_ancestral_allele 

Definition at line 294 of file VariantProperties_.hpp.

◆ E_memberIndex [6/12]

Enumerator
e__allMandatory 
e_type 
e_delta 
e_observation 

Definition at line 135 of file Variation_inst_.hpp.

◆ E_memberIndex [7/12]

Enumerator
e__allMandatory 
e_type 
e_variations 
e_name 

Definition at line 229 of file Variation_ref_.hpp.

◆ E_memberIndex [8/12]

Enumerator
e__allMandatory 
e_phase 
e_x_length 

Definition at line 601 of file Variation_ref_.hpp.

◆ E_memberIndex [9/12]

Enumerator
e__allMandatory 
e_reference 
e_test 

Definition at line 721 of file Variation_ref_.hpp.

◆ E_memberIndex [10/12]

Enumerator
e__allMandatory 
e_description 
e_object_id 

Definition at line 1081 of file Variation_ref_.hpp.

◆ E_memberIndex [11/12]

Enumerator
e__allMandatory 
e_source 
e_condition 

Definition at line 1180 of file Variation_ref_.hpp.

◆ E_memberIndex [12/12]

Enumerator
e__allMandatory 
e_id 
e_parent_id 
e_sample_id 
e_other_ids 
e_name 
e_synonyms 
e_description 
e_phenotype 
e_method 
e_population_data 
e_variant_prop 
e_validated 
e_clinical_test 
e_allele_origin 
e_allele_state 
e_allele_frequency 
e_is_ancestral_allele 
e_pub 
e_data 
e_consequence 
e_location 
e_ext_locs 
e_ext 
e_somatic_origin 

Definition at line 1307 of file Variation_ref_.hpp.

◆ EAction

Enumerator
eAction_morph 

replace len(seq) positions starting with location.start with seq

eAction_offset 

go downstream by distance specified by multiplier (upstream if < 0), in genomic context.

eAction_del_at 

excise sequence at location if multiplier is specified, delete len(location)*multiplier positions downstream

eAction_ins_before 

insert seq before the location.start

Definition at line 249 of file Delta_item_.hpp.

◆ EAllele_origin [1/2]

origin of this allele, if known note that these are powers-of-two, and represent bits; thus, we can represent more than one state simultaneously through a bitwise OR

Enumerator
eAllele_origin_unknown 
eAllele_origin_germline 
eAllele_origin_somatic 
eAllele_origin_inherited 
eAllele_origin_paternal 
eAllele_origin_maternal 
eAllele_origin_de_novo 
eAllele_origin_biparental 
eAllele_origin_uniparental 
eAllele_origin_not_tested 
eAllele_origin_tested_inconclusive 
eAllele_origin_not_reported 
eAllele_origin_other 

stopper - 2^31

Definition at line 242 of file VariantProperties_.hpp.

◆ EAllele_origin [2/2]

origin of this allele, if known note that these are powers-of-two, and represent bits; thus, we can represent more than one state simultaneously through a bitwise OR DEPRECATED: new field = VariantProperties.allele-origin

Enumerator
eAllele_origin_unknown 
eAllele_origin_germline 
eAllele_origin_somatic 
eAllele_origin_inherited 
eAllele_origin_paternal 
eAllele_origin_maternal 
eAllele_origin_de_novo 
eAllele_origin_biparental 
eAllele_origin_uniparental 
eAllele_origin_not_tested 
eAllele_origin_tested_inconclusive 
eAllele_origin_other 

stopper - 2^31

Definition at line 138 of file Variation_ref_.hpp.

◆ EAllele_state [1/2]

observed allele state, if known NOTE: THIS IS NOT A BITFIELD!

Enumerator
eAllele_state_unknown 
eAllele_state_homozygous 
eAllele_state_heterozygous 
eAllele_state_hemizygous 
eAllele_state_nullizygous 
eAllele_state_other 

Definition at line 263 of file VariantProperties_.hpp.

◆ EAllele_state [2/2]

observed allele state, if known DEPRECATED: new field = VariantProperties.allele-state

Enumerator
eAllele_state_unknown 
eAllele_state_homozygous 
eAllele_state_heterozygous 
eAllele_state_hemizygous 
eAllele_state_nullizygous 
eAllele_state_other 

Definition at line 158 of file Variation_ref_.hpp.

◆ EClinical_significance

does this variant have known clinical significance?

Enumerator
eClinical_significance_unknown 
eClinical_significance_untested 
eClinical_significance_non_pathogenic 
eClinical_significance_probable_non_pathogenic 
eClinical_significance_probable_pathogenic 
eClinical_significance_pathogenic 
eClinical_significance_drug_response 
eClinical_significance_histocompatibility 
eClinical_significance_other 

Definition at line 90 of file Phenotype_.hpp.

◆ EConfidence

Enumerator
eConfidence_unknown 
eConfidence_likely_artifact 
eConfidence_other 

Definition at line 230 of file VariantProperties_.hpp.

◆ EData_set_type

Enumerator
eData_set_type_unknown 
eData_set_type_compound 

complex change at the same location on the same molecule

eData_set_type_products 

different products arising from the same variation in a precursor, e.g. r.[13g>a, 13_88del]

eData_set_type_haplotype 

changes on the same allele, e.g r.[13g>a;15u>c]

eData_set_type_genotype 

changes on different alleles in the same genotype, e.g. g.[476C>T]+[476C>T]

eData_set_type_mosaic 

different genotypes in the same individual

eData_set_type_individual 

same organism; allele relationship unknown, e.g. g.[476C>T(+)183G>C]

eData_set_type_population 

population

eData_set_type_alleles 

set represents a set of observed alleles

eData_set_type_package 

set represents a package of observations at a given location, generally containing asserted + reference

eData_set_type_other 

Definition at line 206 of file Variation_ref_.hpp.

◆ EEffect

Enumerator
eEffect_no_change 

known to cause no functional changes since 0 does not combine with any other bit value, 'no-change' specifically implies that there are no consequences

eEffect_synonymous 

one allele in the set does not change the encoded amino acid (0x1)

eEffect_nonsense 

one allele in the set changes to STOP codon (TER). (0x2)

eEffect_missense 

one allele in the set changes protein peptide (0x4)

eEffect_frameshift 

one allele in the set changes all downstream amino acids (0x8)

eEffect_up_regulator 

the variant causes increased transcription (0x10)

eEffect_down_regulator 

the variant causes decreased transcription (0x20)

eEffect_methylation 
eEffect_stop_gain 

reference codon is not stop codon, but the snp variant allele changes the codon to a terminating codon.

eEffect_stop_loss 

reverse of STOP-GAIN: reference codon is a stop codon, but a snp variant allele changes the codon to a non-terminating codon.

Definition at line 162 of file VariantProperties_.hpp.

◆ EFlags

This field is an explicit bit-field Valid values should be a bitwise combination (= simple sum) of any of the values below.

Enumerator
eFlags_is_default_population 
eFlags_is_minor_allele 
eFlags_is_rare_allele 

Definition at line 92 of file Population_data_.hpp.

◆ EFrequency_based_validation

Enumerator
eFrequency_based_validation_is_mutation 

low frequency variation that is cited in journal or other reputable sources (0x01)

eFrequency_based_validation_above_5pct_all 

>5% minor allele freq in each and all populations (0x02)

eFrequency_based_validation_above_5pct_1plus 

>5% minor allele freq in 1+ populations (0x04)

eFrequency_based_validation_validated 

Bit is set if the variant has a minor allele observed in two or more separate chromosomes.

eFrequency_based_validation_above_1pct_all 

>1% minor allele freq in each and all populations (0x10)

eFrequency_based_validation_above_1pct_1plus 

>1% minor allele freq in 1+ populations (0x20)

Definition at line 199 of file VariantProperties_.hpp.

◆ EGene_location

Enumerator
eGene_location_in_gene 

Sequence intervals covered by a gene ID but not having an aligned transcript (0x01)

eGene_location_near_gene_5 

Within 2kb of the 5' end of a gene feature.

eGene_location_near_gene_3 

Within 0.5kb of the 3' end of a gene feature.

eGene_location_intron 

In Intron (0x08)

eGene_location_donor 

In donor splice-site (0x10)

eGene_location_acceptor 

In acceptor splice-site (0x20)

eGene_location_utr_5 

In 5' UTR (0x40)

eGene_location_utr_3 

In 3' UTR (0x80)

eGene_location_in_start_codon 

the variant is observed in a start codon (0x100)

eGene_location_in_stop_codon 

the variant is observed in a stop codon (0x200)

eGene_location_intergenic 

variant located between genes (0x400)

eGene_location_conserved_noncoding 

variant is located in a conserved non-coding region (0x800)

Definition at line 144 of file VariantProperties_.hpp.

◆ EGenotype

Enumerator
eGenotype_in_haplotype_set 

Exists in a haplotype tagging set (0x01)

eGenotype_has_genotypes 

SNP has individual genotype (0x02)

Definition at line 211 of file VariantProperties_.hpp.

◆ EMap_weight

map-weight captures specificity of placement NOTE: This is *NOT* a bitfield

Enumerator
eMap_weight_is_uniquely_placed 
eMap_weight_placed_twice_on_same_chrom 
eMap_weight_placed_twice_on_diff_chrom 
eMap_weight_many_placements 

Definition at line 189 of file VariantProperties_.hpp.

◆ EMapping

Enumerator
eMapping_has_other_snp 

Another SNP has the same mapped positions on reference assembly (0x01)

eMapping_has_assembly_conflict 

Weight 1 or 2 SNPs that map to different chromosomes on different assemblies (0x02)

eMapping_is_assembly_specific 

Only maps to 1 assembly (0x04)

Definition at line 178 of file VariantProperties_.hpp.

◆ EMethod_E

Enumerator
eMethod_E_unknown 
eMethod_E_bac_acgh 
eMethod_E_computational 
eMethod_E_curated 
eMethod_E_digital_array 
eMethod_E_expression_array 
eMethod_E_fish 
eMethod_E_flanking_sequence 
eMethod_E_maph 
eMethod_E_mcd_analysis 
eMethod_E_mlpa 
eMethod_E_oea_assembly 
eMethod_E_oligo_acgh 
eMethod_E_paired_end 
eMethod_E_pcr 
eMethod_E_qpcr 
eMethod_E_read_depth 
eMethod_E_roma 
eMethod_E_rt_pcr 
eMethod_E_sage 
eMethod_E_sequence_alignment 
eMethod_E_sequencing 
eMethod_E_snp_array 
eMethod_E_snp_genoytyping 
eMethod_E_southern 
eMethod_E_western 
eMethod_E_optical_mapping 
eMethod_E_other 

Definition at line 100 of file Variation_ref_.hpp.

◆ EObservation

'observation' is used to label items in a Variation-ref package This field is explicitly a bit-field, so the bitwise OR (= sum) of any of the values may be observed.

Enumerator
eObservation_asserted 

inst represents the asserted base at a position

eObservation_reference 

inst represents the reference base at the position

eObservation_variant 

inst represent the observed variant at a given position

Definition at line 120 of file Variation_inst_.hpp.

◆ EQuality_check

Enumerator
eQuality_check_contig_allele_missing 

Reference sequence allele at the mapped position is not present in the SNP allele list, adjusted for orientation (0x01)

eQuality_check_withdrawn_by_submitter 

One member SS is withdrawn by submitter (0x02)

eQuality_check_non_overlapping_alleles 

RS set has 2+ alleles from different submissions and these sets share no alleles in common (0x04)

eQuality_check_strain_specific 

Straing specific fixed difference (0x08)

eQuality_check_genotype_conflict 

Has Genotype Conflict (0x10)

Definition at line 219 of file VariantProperties_.hpp.

◆ EResource_link

NOTE: The format for most of these values is as an integer Unless otherwise noted, these integers represent a bitwise OR (= simple sum) of the possible values, and as such, these values represent the specific bit flags that may be set for each of the possible attributes here.

Enumerator
eResource_link_preserved 

Clinical, Pubmed, Cited, (0x01)

eResource_link_provisional 

Provisional Third Party Annotations (0x02)

eResource_link_has3D 

Has 3D strcture SNP3D table (0x04)

eResource_link_submitterLinkout 

SNP->SubSNP->Batch link_out (0x08)

eResource_link_clinical 

Clinical if LSDB, OMIM, TPA, Diagnostic (0x10)

eResource_link_genotypeKit 

Marker exists on high density genotyping kit (0x20)

Definition at line 132 of file VariantProperties_.hpp.

◆ EType

enum CVariation_inst_Base::EType ( void  )
Enumerator
eType_unknown 

delta=[]

eType_identity 

delta=[]

eType_inv 

delta=[del, ins.seq= RevComp(variation-location)]

eType_snv 

delta=[morph of length 1] NOTE: this is snV not snP; the latter requires frequency-based validation to be established in VariantProperties the strict definition of SNP is an SNV with an established population frequency of at least 1% in at least 1 popuplation

eType_mnp 

delta=[morph of length >1]

eType_delins 

delta=[del, ins]

eType_del 

delta=[del]

eType_ins 

delta=[ins]

eType_microsatellite 

delta=[del, ins.seq= repeat-unit with fuzzy multiplier] variation-location is the microsat expansion on the sequence

eType_transposon 

delta=[del, ins.seq= known donor or 'this'] variation-location is equiv of transposon locs.

eType_cnv 

delta=[del, ins= 'this' with fuzzy multiplier]

eType_direct_copy 

delta=[ins.seq= upstream location on the same strand]

eType_rev_direct_copy 

delta=[ins.seq= downstream location on the same strand]

eType_inverted_copy 

delta=[ins.seq= upstream location on the opposite strand]

eType_everted_copy 

delta=[ins.seq= downstream location on the opposite strand]

eType_translocation 

delta=like delins

eType_prot_missense 

delta=[morph of length 1]

eType_prot_nonsense 

delta=[del]; variation-location is the tail of the protein being truncated

eType_prot_neutral 

delta=[morph of length 1]

eType_prot_silent 

delta=[morph of length 1, same AA as at variation-location]

eType_prot_other 

delta=any

eType_other 

delta=any

Definition at line 89 of file Variation_inst_.hpp.

Function Documentation

◆ C_Condition() [1/2]

CVariation_ref_Base::C_E_Somatic_origin::C_Condition::C_Condition ( const C_Condition )
private

◆ C_Condition() [2/2]

END_CLASS_INFO CVariation_ref_Base::C_E_Somatic_origin::C_Condition::C_Condition ( void  )

Definition at line 603 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_set_State.

◆ C_Data() [1/2]

CVariation_ref_Base::C_Data::C_Data ( const C_Data )
private

◆ C_Data() [2/2]

END_CHOICE_INFO CVariation_ref_Base::C_Data::C_Data ( void  )

Definition at line 320 of file Variation_ref_.cpp.

◆ C_E_Consequence() [1/2]

CVariation_ref_Base::C_E_Consequence::C_E_Consequence ( const C_E_Consequence )
private

◆ C_E_Consequence() [2/2]

END_CHOICE_INFO CVariation_ref_Base::C_E_Consequence::C_E_Consequence ( void  )

Definition at line 560 of file Variation_ref_.cpp.

◆ C_E_Somatic_origin() [1/2]

CVariation_ref_Base::C_E_Somatic_origin::C_E_Somatic_origin ( const C_E_Somatic_origin )
private

◆ C_E_Somatic_origin() [2/2]

END_CLASS_INFO CVariation_ref_Base::C_E_Somatic_origin::C_E_Somatic_origin ( void  )

Definition at line 667 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_set_State.

◆ C_Frameshift() [1/2]

CVariation_ref_Base::C_E_Consequence::C_Frameshift::C_Frameshift ( const C_Frameshift )
private

◆ C_Frameshift() [2/2]

END_CLASS_INFO CVariation_ref_Base::C_E_Consequence::C_Frameshift::C_Frameshift ( void  )

◆ C_Loss_of_heterozygosity() [1/2]

CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::C_Loss_of_heterozygosity ( const C_Loss_of_heterozygosity )
private

◆ C_Loss_of_heterozygosity() [2/2]

END_CLASS_INFO CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::C_Loss_of_heterozygosity ( void  )

Definition at line 394 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_set_State.

◆ C_Seq() [1/2]

CDelta_item_Base::C_Seq::C_Seq ( const C_Seq )
private

◆ C_Seq() [2/2]

END_CHOICE_INFO CDelta_item_Base::C_Seq::C_Seq ( void  )

Definition at line 164 of file Delta_item_.cpp.

◆ C_Set() [1/2]

CVariation_ref_Base::C_Data::C_Set::C_Set ( const C_Set )
private

◆ C_Set() [2/2]

END_CLASS_INFO CVariation_ref_Base::C_Data::C_Set::C_Set ( void  )

◆ CanGetAction()

bool CDelta_item_Base::CanGetAction ( void  ) const
inline

Check if it is safe to call GetAction method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 608 of file Delta_item_.hpp.

◆ CanGetAllele_frequency() [1/3]

bool CPopulation_data_Base::CanGetAllele_frequency ( void  ) const
inline

Check if it is safe to call GetAllele_frequency method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 543 of file Population_data_.hpp.

References CPopulation_data_Base::IsSetAllele_frequency().

Referenced by CPopulation_data_Base::GetAllele_frequency().

◆ CanGetAllele_frequency() [2/3]

bool CVariantProperties_Base::CanGetAllele_frequency ( void  ) const
inline

Check if it is safe to call GetAllele_frequency method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1606 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetAllele_frequency().

Referenced by CVariation_ref::CanGetAllele_frequency(), and CVariantProperties_Base::GetAllele_frequency().

◆ CanGetAllele_frequency() [3/3]

bool CVariation_ref_Base::CanGetAllele_frequency ( void  ) const
inline

Check if it is safe to call GetAllele_frequency method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 3347 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetAllele_frequency().

Referenced by CVariation_ref::CanGetAllele_frequency(), and CVariation_ref_Base::GetAllele_frequency().

◆ CanGetAllele_origin() [1/2]

bool CVariantProperties_Base::CanGetAllele_origin ( void  ) const
inline

Check if it is safe to call GetAllele_origin method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1512 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetAllele_origin().

Referenced by CVariation_ref::CanGetAllele_origin(), and CVariantProperties_Base::GetAllele_origin().

◆ CanGetAllele_origin() [2/2]

bool CVariation_ref_Base::CanGetAllele_origin ( void  ) const
inline

Check if it is safe to call GetAllele_origin method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 3253 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetAllele_origin().

Referenced by CVariation_ref::CanGetAllele_origin(), and CVariation_ref_Base::GetAllele_origin().

◆ CanGetAllele_state() [1/2]

bool CVariantProperties_Base::CanGetAllele_state ( void  ) const
inline

Check if it is safe to call GetAllele_state method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1559 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetAllele_state().

Referenced by CVariation_ref::CanGetAllele_state(), and CVariantProperties_Base::GetAllele_state().

◆ CanGetAllele_state() [2/2]

bool CVariation_ref_Base::CanGetAllele_state ( void  ) const
inline

Check if it is safe to call GetAllele_state method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 3300 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetAllele_state().

Referenced by CVariation_ref::CanGetAllele_state(), and CVariation_ref_Base::GetAllele_state().

◆ CanGetChromosomes_tested()

bool CPopulation_data_Base::CanGetChromosomes_tested ( void  ) const
inline

Check if it is safe to call GetChromosomes_tested method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 471 of file Population_data_.hpp.

References CPopulation_data_Base::IsSetChromosomes_tested().

Referenced by CPopulation_data_Base::GetChromosomes_tested().

◆ CanGetClinical_significance()

bool CPhenotype_Base::CanGetClinical_significance ( void  ) const
inline

Check if it is safe to call GetClinical_significance method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 420 of file Phenotype_.hpp.

References CPhenotype_Base::IsSetClinical_significance().

Referenced by CPhenotype_Base::GetClinical_significance().

◆ CanGetClinical_test()

bool CVariation_ref_Base::CanGetClinical_test ( void  ) const
inline

Check if it is safe to call GetClinical_test method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 3228 of file Variation_ref_.hpp.

◆ CanGetCondition()

bool CVariation_ref_Base::C_E_Somatic_origin::CanGetCondition ( void  ) const
inline

Check if it is safe to call GetCondition method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 2857 of file Variation_ref_.hpp.

◆ CanGetConfidence()

bool CVariantProperties_Base::CanGetConfidence ( void  ) const
inline

Check if it is safe to call GetConfidence method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1418 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetConfidence().

Referenced by CVariantProperties_Base::GetConfidence().

◆ CanGetConsequence()

bool CVariation_ref_Base::CanGetConsequence ( void  ) const
inline

Check if it is safe to call GetConsequence method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 3492 of file Variation_ref_.hpp.

Referenced by s_IsLOH().

◆ CanGetData()

bool CVariation_ref_Base::CanGetData ( void  ) const
inline

Check if it is safe to call GetData method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 3462 of file Variation_ref_.hpp.

◆ CanGetDelta()

bool CVariation_inst_Base::CanGetDelta ( void  ) const
inline

Check if it is safe to call GetDelta method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 331 of file Variation_inst_.hpp.

Referenced by CGuiObjectInfoVariant::GetToolTip(), and NSnpGui::GetVcfType().

◆ CanGetDescription() [1/2]

bool CVariation_ref_Base::C_E_Somatic_origin::C_Condition::CanGetDescription ( void  ) const
inline

Check if it is safe to call GetDescription method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 2764 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetDescription().

◆ CanGetDescription() [2/2]

bool CVariation_ref_Base::CanGetDescription ( void  ) const
inline

Check if it is safe to call GetDescription method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 3038 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetDescription().

Referenced by CVariation_ref_Base::C_E_Somatic_origin::C_Condition::GetDescription(), and CVariation_ref_Base::GetDescription().

◆ CanGetEffect()

bool CVariantProperties_Base::CanGetEffect ( void  ) const
inline

Check if it is safe to call GetEffect method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1111 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetEffect().

Referenced by CVariantProperties_Base::GetEffect(), and NSNPVariationHelper::VariantPropAsStrings().

◆ CanGetExt()

bool CVariation_ref_Base::CanGetExt ( void  ) const
inline

Check if it is safe to call GetExt method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 3563 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetExt().

Referenced by CVariation_ref::CanGetExt(), and CVariation_ref_Base::GetExt().

◆ CanGetExt_locs()

bool CVariation_ref_Base::CanGetExt_locs ( void  ) const
inline

Check if it is safe to call GetExt_locs method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 3538 of file Variation_ref_.hpp.

Referenced by CVariation_ref::CanGetExt_locs().

◆ CanGetFlags()

bool CPopulation_data_Base::CanGetFlags ( void  ) const
inline

Check if it is safe to call GetFlags method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 590 of file Population_data_.hpp.

References CPopulation_data_Base::IsSetFlags().

Referenced by CPopulation_data_Base::GetFlags().

◆ CanGetFrequency_based_validation()

bool CVariantProperties_Base::CanGetFrequency_based_validation ( void  ) const
inline

Check if it is safe to call GetFrequency_based_validation method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1252 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetFrequency_based_validation().

Referenced by CVariantProperties_Base::GetFrequency_based_validation(), and NSNPVariationHelper::VariantPropAsStrings().

◆ CanGetGene_location()

bool CVariantProperties_Base::CanGetGene_location ( void  ) const
inline

Check if it is safe to call GetGene_location method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1064 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetGene_location().

Referenced by CVariantProperties_Base::GetGene_location(), and NSNPVariationHelper::VariantPropAsStrings().

◆ CanGetGenotype()

bool CVariantProperties_Base::CanGetGenotype ( void  ) const
inline

Check if it is safe to call GetGenotype method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1299 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetGenotype().

Referenced by CVariantProperties_Base::GetGenotype().

◆ CanGetGenotype_frequency()

bool CPopulation_data_Base::CanGetGenotype_frequency ( void  ) const
inline

Check if it is safe to call GetGenotype_frequency method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 424 of file Population_data_.hpp.

References CPopulation_data_Base::IsSetGenotype_frequency().

Referenced by CPopulation_data_Base::GetGenotype_frequency().

◆ CanGetId() [1/2]

bool CExt_loc_Base::CanGetId ( void  ) const
inline

Check if it is safe to call GetId method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 205 of file Ext_loc_.hpp.

◆ CanGetId() [2/2]

bool CVariation_ref_Base::CanGetId ( void  ) const
inline

Check if it is safe to call GetId method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 2878 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetId().

Referenced by CVariation_ref_Base::GetId(), CSeq_featHandler::GetLabel(), CGuiObjectInfoVariant::GetLinks(), CFeatGlyph::IsDbVar(), and NSearchFeatPanel::s_GetFeatureLabel().

◆ CanGetIs_ancestral_allele() [1/2]

bool CVariantProperties_Base::CanGetIs_ancestral_allele ( void  ) const
inline

Check if it is safe to call GetIs_ancestral_allele method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1653 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetIs_ancestral_allele().

Referenced by CVariation_ref::CanGetIs_ancestral_allele(), and CVariantProperties_Base::GetIs_ancestral_allele().

◆ CanGetIs_ancestral_allele() [2/2]

bool CVariation_ref_Base::CanGetIs_ancestral_allele ( void  ) const
inline

Check if it is safe to call GetIs_ancestral_allele method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 3394 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetIs_ancestral_allele().

Referenced by CVariation_ref::CanGetIs_ancestral_allele(), and CVariation_ref_Base::GetIs_ancestral_allele().

◆ CanGetLocation() [1/2]

bool CExt_loc_Base::CanGetLocation ( void  ) const
inline

Check if it is safe to call GetLocation method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 235 of file Ext_loc_.hpp.

◆ CanGetLocation() [2/2]

bool CVariation_ref_Base::CanGetLocation ( void  ) const
inline

Check if it is safe to call GetLocation method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 3517 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetLocation().

Referenced by CVariation_ref::CanGetLocation(), and CVariation_ref_Base::GetLocation().

◆ CanGetMap_weight()

bool CVariantProperties_Base::CanGetMap_weight ( void  ) const
inline

Check if it is safe to call GetMap_weight method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1205 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetMap_weight().

Referenced by CVariantProperties_Base::GetMap_weight().

◆ CanGetMapping()

bool CVariantProperties_Base::CanGetMapping ( void  ) const
inline

Check if it is safe to call GetMapping method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1158 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetMapping().

Referenced by CVariantProperties_Base::GetMapping(), and NSNPVariationHelper::VariantPropAsStrings().

◆ CanGetMethod()

bool CVariation_ref_Base::CanGetMethod ( void  ) const
inline

Check if it is safe to call GetMethod method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 3110 of file Variation_ref_.hpp.

Referenced by CSeq_featHandler::GetLabel().

◆ CanGetMultiplier()

bool CDelta_item_Base::CanGetMultiplier ( void  ) const
inline

Check if it is safe to call GetMultiplier method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 540 of file Delta_item_.hpp.

References CDelta_item_Base::IsSetMultiplier().

Referenced by CDelta_item_Base::GetMultiplier().

◆ CanGetMultiplier_fuzz()

bool CDelta_item_Base::CanGetMultiplier_fuzz ( void  ) const
inline

Check if it is safe to call GetMultiplier_fuzz method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 587 of file Delta_item_.hpp.

References CDelta_item_Base::IsSetMultiplier_fuzz().

Referenced by CDelta_item_Base::GetMultiplier_fuzz().

◆ CanGetName() [1/2]

bool CVariation_ref_Base::C_Data::C_Set::CanGetName ( void  ) const
inline

Check if it is safe to call GetName method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 2341 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetName().

◆ CanGetName() [2/2]

bool CVariation_ref_Base::CanGetName ( void  ) const
inline

Check if it is safe to call GetName method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 2966 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetName().

Referenced by CVariation_ref_Base::C_Data::C_Set::GetName(), and CVariation_ref_Base::GetName().

◆ CanGetObject_id()

bool CVariation_ref_Base::C_E_Somatic_origin::C_Condition::CanGetObject_id ( void  ) const
inline

Check if it is safe to call GetObject_id method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 2811 of file Variation_ref_.hpp.

◆ CanGetObservation()

bool CVariation_inst_Base::CanGetObservation ( void  ) const
inline

Check if it is safe to call GetObservation method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 356 of file Variation_inst_.hpp.

References CVariation_inst_Base::IsSetObservation().

Referenced by CVariation_inst_Base::GetObservation(), CGuiObjectInfoVariant::GetToolTip(), and NSnpGui::GetVcfType().

◆ CanGetOther_ids()

bool CVariation_ref_Base::CanGetOther_ids ( void  ) const
inline

Check if it is safe to call GetOther_ids method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 2941 of file Variation_ref_.hpp.

◆ CanGetOther_validation()

bool CVariantProperties_Base::CanGetOther_validation ( void  ) const
inline

Check if it is safe to call GetOther_validation method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1465 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetOther_validation().

Referenced by CVariation_ref::CanGetValidated(), and CVariantProperties_Base::GetOther_validation().

◆ CanGetParent_id()

bool CVariation_ref_Base::CanGetParent_id ( void  ) const
inline

Check if it is safe to call GetParent_id method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 2899 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetParent_id().

Referenced by CSeq_featHandler::GetLabel(), CGuiObjectInfoVariant::GetLinks(), CVariation_ref_Base::GetParent_id(), and CGuiObjectInfoVariant::GetToolTip().

◆ CanGetPhase()

bool CVariation_ref_Base::C_E_Consequence::C_Frameshift::CanGetPhase ( void  ) const
inline

Check if it is safe to call GetPhase method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 2485 of file Variation_ref_.hpp.

◆ CanGetPhenotype()

bool CVariation_ref_Base::CanGetPhenotype ( void  ) const
inline

Check if it is safe to call GetPhenotype method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 3085 of file Variation_ref_.hpp.

Referenced by CSeq_featHandler::GetLabel(), and CGuiObjectInfoVariant::GetToolTip().

◆ CanGetPopulation()

bool CPopulation_data_Base::CanGetPopulation ( void  ) const
inline

Check if it is safe to call GetPopulation method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 377 of file Population_data_.hpp.

References CPopulation_data_Base::IsSetPopulation().

Referenced by CPopulation_data_Base::GetPopulation().

◆ CanGetPopulation_data()

bool CVariation_ref_Base::CanGetPopulation_data ( void  ) const
inline

Check if it is safe to call GetPopulation_data method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 3135 of file Variation_ref_.hpp.

◆ CanGetProject_data()

bool CVariantProperties_Base::CanGetProject_data ( void  ) const
inline

Check if it is safe to call GetProject_data method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1346 of file VariantProperties_.hpp.

◆ CanGetPub()

bool CVariation_ref_Base::CanGetPub ( void  ) const
inline

Check if it is safe to call GetPub method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 3441 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetPub().

Referenced by CVariation_ref_Base::GetPub().

◆ CanGetQuality_check()

bool CVariantProperties_Base::CanGetQuality_check ( void  ) const
inline

Check if it is safe to call GetQuality_check method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1371 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetQuality_check().

Referenced by CVariantProperties_Base::GetQuality_check(), and NSNPVariationHelper::VariantPropAsStrings().

◆ CanGetReference()

bool CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::CanGetReference ( void  ) const
inline

Check if it is safe to call GetReference method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 2579 of file Variation_ref_.hpp.

◆ CanGetResource_link()

bool CVariantProperties_Base::CanGetResource_link ( void  ) const
inline

Check if it is safe to call GetResource_link method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 1017 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetResource_link().

Referenced by CVariantProperties_Base::GetResource_link(), and NSNPVariationHelper::VariantPropAsStrings().

◆ CanGetSample_id()

bool CVariation_ref_Base::CanGetSample_id ( void  ) const
inline

Check if it is safe to call GetSample_id method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 2920 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetSample_id().

Referenced by CGuiObjectInfoVariant::GetLinks(), CVariation_ref_Base::GetSample_id(), and CGuiObjectInfoVariant::GetToolTip().

◆ CanGetSample_ids()

bool CPopulation_data_Base::CanGetSample_ids ( void  ) const
inline

Check if it is safe to call GetSample_ids method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 518 of file Population_data_.hpp.

◆ CanGetSeq()

bool CDelta_item_Base::CanGetSeq ( void  ) const
inline

Check if it is safe to call GetSeq method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 519 of file Delta_item_.hpp.

References CDelta_item_Base::IsSetSeq().

Referenced by CDelta_item_Base::GetSeq().

◆ CanGetSomatic_origin()

bool CVariation_ref_Base::CanGetSomatic_origin ( void  ) const
inline

Check if it is safe to call GetSomatic_origin method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 3584 of file Variation_ref_.hpp.

Referenced by CSeq_featHandler::GetLabel(), and CGuiObjectInfoVariant::GetToolTip().

◆ CanGetSource() [1/2]

bool CPhenotype_Base::CanGetSource ( void  ) const
inline

Check if it is safe to call GetSource method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 301 of file Phenotype_.hpp.

References CPhenotype_Base::IsSetSource().

Referenced by CPhenotype_Base::GetSource().

◆ CanGetSource() [2/2]

bool CVariation_ref_Base::C_E_Somatic_origin::CanGetSource ( void  ) const
inline

Check if it is safe to call GetSource method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 2836 of file Variation_ref_.hpp.

◆ CanGetSynonyms()

bool CVariation_ref_Base::CanGetSynonyms ( void  ) const
inline

Check if it is safe to call GetSynonyms method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 3013 of file Variation_ref_.hpp.

◆ CanGetTerm()

bool CPhenotype_Base::CanGetTerm ( void  ) const
inline

Check if it is safe to call GetTerm method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 348 of file Phenotype_.hpp.

References CPhenotype_Base::IsSetTerm().

Referenced by CPhenotype_Base::GetTerm().

◆ CanGetTest()

bool CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::CanGetTest ( void  ) const
inline

Check if it is safe to call GetTest method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 2626 of file Variation_ref_.hpp.

◆ CanGetType() [1/2]

bool CVariation_inst_Base::CanGetType ( void  ) const
inline

Check if it is safe to call GetType method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 284 of file Variation_inst_.hpp.

References CVariation_inst_Base::IsSetType().

Referenced by CVariation_inst_Base::GetType().

◆ CanGetType() [2/2]

bool CVariation_ref_Base::C_Data::C_Set::CanGetType ( void  ) const
inline

Check if it is safe to call GetType method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 2269 of file Variation_ref_.hpp.

◆ CanGetValidated()

bool CVariation_ref_Base::CanGetValidated ( void  ) const
inline

Check if it is safe to call GetValidated method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 3181 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetValidated().

Referenced by CVariation_ref::CanGetValidated(), and CVariation_ref_Base::GetValidated().

◆ CanGetVariant_prop()

bool CVariation_ref_Base::CanGetVariant_prop ( void  ) const
inline

◆ CanGetVariations()

bool CVariation_ref_Base::C_Data::C_Set::CanGetVariations ( void  ) const
inline

Check if it is safe to call GetVariations method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 2316 of file Variation_ref_.hpp.

◆ CanGetVersion()

bool CVariantProperties_Base::CanGetVersion ( void  ) const
inline

Check if it is safe to call GetVersion method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 970 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetVersion().

Referenced by CVariantProperties_Base::GetVersion().

◆ CanGetX_length()

bool CVariation_ref_Base::C_E_Consequence::C_Frameshift::CanGetX_length ( void  ) const
inline

Check if it is safe to call GetX_length method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 2532 of file Variation_ref_.hpp.

◆ CanGetXref()

bool CPhenotype_Base::CanGetXref ( void  ) const
inline

Check if it is safe to call GetXref method.

Returns
  • true, if the data member is getatable.
  • false, otherwise.

Definition at line 395 of file Phenotype_.hpp.

◆ CDelta_item_Base() [1/2]

CDelta_item_Base::CDelta_item_Base ( const CDelta_item_Base )
private

◆ CDelta_item_Base() [2/2]

END_CLASS_INFO CDelta_item_Base::CDelta_item_Base ( void  )

Definition at line 243 of file Delta_item_.cpp.

References CDelta_item_Base::m_set_State.

◆ CExt_loc() [1/2]

CExt_loc::CExt_loc ( const CExt_loc value)
private

◆ CExt_loc() [2/2]

CExt_loc::CExt_loc ( void  )
inline

Definition at line 86 of file Ext_loc.hpp.

◆ CExt_loc_Base() [1/2]

CExt_loc_Base::CExt_loc_Base ( const CExt_loc_Base )
private

◆ CExt_loc_Base() [2/2]

END_CLASS_INFO CExt_loc_Base::CExt_loc_Base ( void  )

◆ CheckSelected() [1/3]

void CDelta_item_Base::C_Seq::CheckSelected ( E_Choice  index) const
inline

Verify selection, throw exception if it differs from the expected.

Parameters
indexExpected selection.

Definition at line 466 of file Delta_item_.hpp.

◆ CheckSelected() [2/3]

void CVariation_ref_Base::C_Data::CheckSelected ( E_Choice  index) const
inline

◆ CheckSelected() [3/3]

void CVariation_ref_Base::C_E_Consequence::CheckSelected ( E_Choice  index) const
inline

◆ CPhenotype() [1/2]

CPhenotype::CPhenotype ( const CPhenotype value)
private

◆ CPhenotype() [2/2]

CPhenotype::CPhenotype ( void  )
inline

Definition at line 86 of file Phenotype.hpp.

◆ CPhenotype_Base() [1/2]

CPhenotype_Base::CPhenotype_Base ( const CPhenotype_Base )
private

◆ CPhenotype_Base() [2/2]

END_CLASS_INFO CPhenotype_Base::CPhenotype_Base ( void  )

Definition at line 107 of file Phenotype_.cpp.

References CPhenotype_Base::m_set_State.

◆ CPopulation_data() [1/2]

CPopulation_data::CPopulation_data ( const CPopulation_data value)
private

◆ CPopulation_data() [2/2]

CPopulation_data::CPopulation_data ( void  )
inline

Definition at line 86 of file Population_data.hpp.

◆ CPopulation_data_Base() [1/2]

CPopulation_data_Base::CPopulation_data_Base ( const CPopulation_data_Base )
private

◆ CPopulation_data_Base() [2/2]

END_CLASS_INFO CPopulation_data_Base::CPopulation_data_Base ( void  )

Definition at line 99 of file Population_data_.cpp.

References CPopulation_data_Base::m_set_State.

◆ CVariantProperties_Base() [1/2]

CVariantProperties_Base::CVariantProperties_Base ( const CVariantProperties_Base )
private

◆ CVariantProperties_Base() [2/2]

END_CLASS_INFO CVariantProperties_Base::CVariantProperties_Base ( void  )

Definition at line 249 of file VariantProperties_.cpp.

References CVariantProperties_Base::m_set_State.

◆ CVariation_inst() [1/2]

CVariation_inst::CVariation_inst ( const CVariation_inst value)
private

◆ CVariation_inst() [2/2]

CVariation_inst::CVariation_inst ( void  )
inline

Definition at line 86 of file Variation_inst.hpp.

◆ CVariation_inst_Base() [1/2]

CVariation_inst_Base::CVariation_inst_Base ( const CVariation_inst_Base )
private

◆ CVariation_inst_Base() [2/2]

END_CLASS_INFO CVariation_inst_Base::CVariation_inst_Base ( void  )

Definition at line 116 of file Variation_inst_.cpp.

References CVariation_inst_Base::m_set_State.

◆ CVariation_ref_Base() [1/2]

CVariation_ref_Base::CVariation_ref_Base ( const CVariation_ref_Base )
private

◆ CVariation_ref_Base() [2/2]

END_CLASS_INFO CVariation_ref_Base::CVariation_ref_Base ( void  )

◆ DECLARE_INTERNAL_TYPE_INFO() [1/15]

CDelta_item_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [2/15]

CDelta_item_Base::C_Seq::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [3/15]

CExt_loc_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [4/15]

CPhenotype_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [5/15]

CPopulation_data_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [6/15]

CVariantProperties_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [7/15]

CVariation_inst_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [8/15]

CVariation_ref_Base::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [9/15]

CVariation_ref_Base::C_Data::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [10/15]

CVariation_ref_Base::C_Data::C_Set::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [11/15]

CVariation_ref_Base::C_E_Consequence::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [12/15]

CVariation_ref_Base::C_E_Consequence::C_Frameshift::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [13/15]

CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [14/15]

CVariation_ref_Base::C_E_Somatic_origin::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DECLARE_INTERNAL_TYPE_INFO() [15/15]

CVariation_ref_Base::C_E_Somatic_origin::C_Condition::DECLARE_INTERNAL_TYPE_INFO ( )

◆ DoSelect() [1/3]

void CDelta_item_Base::C_Seq::DoSelect ( E_Choice  index,
CObjectMemoryPool pool = 0 
)
private

Definition at line 72 of file Delta_item_.cpp.

References CObject::AddReference().

◆ DoSelect() [2/3]

void CVariation_ref_Base::C_Data::DoSelect ( E_Choice  index,
CObjectMemoryPool pool = 0 
)
private

◆ DoSelect() [3/3]

void CVariation_ref_Base::C_E_Consequence::DoSelect ( E_Choice  index,
CObjectMemoryPool pool = 0 
)
private

◆ EAction()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CDelta_item_Base::EAction ( void  )
static

Access to EAction's attributes (values, names) as defined in spec.

◆ EAllele_origin() [1/2]

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CVariantProperties_Base::EAllele_origin ( void  )
static

Access to EAllele_origin's attributes (values, names) as defined in spec.

◆ EAllele_origin() [2/2]

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CVariation_ref_Base::EAllele_origin ( void  )
static

Access to EAllele_origin's attributes (values, names) as defined in spec.

◆ EAllele_state() [1/2]

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CVariantProperties_Base::EAllele_state ( void  )
static

Access to EAllele_state's attributes (values, names) as defined in spec.

◆ EAllele_state() [2/2]

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CVariation_ref_Base::EAllele_state ( void  )
static

Access to EAllele_state's attributes (values, names) as defined in spec.

◆ EClinical_significance()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CPhenotype_Base::EClinical_significance ( v