Code generated by DATATOOL from 'seqfeat.asn' (module 'NCBI-Variation')

Collaboration diagram for Code generated by DATATOOL from 'seqfeat.asn' (module 'NCBI-Variation'):

Classes
class	CDelta_item_Base
	CDelta_item_Base –. More...
class	CDelta_item_Base::C_Seq
	C_Seq –. More...
class	CExt_loc
	CExt_loc –. More...
class	CExt_loc_Base
	CExt_loc_Base –. More...
class	CPhenotype
	CPhenotype –. More...
class	CPhenotype_Base
	CPhenotype_Base –. More...
class	CPopulation_data
	CPopulation_data –. More...
class	CPopulation_data_Base
	CPopulation_data_Base –. More...
class	CVariantProperties_Base
	Historically, the dbSNP definitions document data structures used in the processing and annotation of variations by the dbSNP group. More...
class	CVariation_inst
	CVariation_inst –. More...
class	CVariation_inst_Base
	Variation instance. More...
class	CVariation_ref_Base
	CVariation_ref_Base –. More...
class	CVariation_ref_Base::C_Data
	C_Data –. More...
class	CVariation_ref_Base::C_Data::C_Set
	Set of related Variations. More...
class	CVariation_ref_Base::C_E_Consequence
	C_E_Consequence –. More...
class	CVariation_ref_Base::C_E_Consequence::C_Frameshift
	see http://www.hgvs.org/mutnomen/recs-prot.html More...
class	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity
	C_Loss_of_heterozygosity –. More...
class	CVariation_ref_Base::C_E_Somatic_origin
	C_E_Somatic_origin –. More...
class	CVariation_ref_Base::C_E_Somatic_origin::C_Condition
	condition related to this origin's type More...

Typedefs
typedef CSerialObject	CDelta_item_Base::Tparent
typedef CSerialObject	CDelta_item_Base::C_Seq::Tparent
typedef CSeq_literal	CDelta_item_Base::C_Seq::TLiteral
typedef CSeq_loc	CDelta_item_Base::C_Seq::TLoc
typedef C_Seq	CDelta_item_Base::TSeq
typedef int	CDelta_item_Base::TMultiplier
typedef CInt_fuzz	CDelta_item_Base::TMultiplier_fuzz
typedef int	CDelta_item_Base::TAction
typedef Tparent::CMemberIndex< E_memberIndex, 5 >	CDelta_item_Base::TmemberIndex
typedef CExt_loc_Base	CExt_loc::Tparent
typedef CSerialObject	CExt_loc_Base::Tparent
typedef CObject_id	CExt_loc_Base::TId
typedef CSeq_loc	CExt_loc_Base::TLocation
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CExt_loc_Base::TmemberIndex
typedef CPhenotype_Base	CPhenotype::Tparent
typedef CSerialObject	CPhenotype_Base::Tparent
typedef string	CPhenotype_Base::TSource
typedef string	CPhenotype_Base::TTerm
typedef list< CRef< CDbtag > >	CPhenotype_Base::TXref
typedef int	CPhenotype_Base::TClinical_significance
typedef Tparent::CMemberIndex< E_memberIndex, 5 >	CPhenotype_Base::TmemberIndex
typedef CPopulation_data_Base	CPopulation_data::Tparent
typedef CSerialObject	CPopulation_data_Base::Tparent
typedef string	CPopulation_data_Base::TPopulation
typedef double	CPopulation_data_Base::TGenotype_frequency
typedef int	CPopulation_data_Base::TChromosomes_tested
typedef list< CRef< CObject_id > >	CPopulation_data_Base::TSample_ids
typedef double	CPopulation_data_Base::TAllele_frequency
typedef int	CPopulation_data_Base::TFlags
typedef Tparent::CMemberIndex< E_memberIndex, 7 >	CPopulation_data_Base::TmemberIndex
typedef CSerialObject	CVariantProperties_Base::Tparent
typedef int	CVariantProperties_Base::TVersion
typedef int	CVariantProperties_Base::TResource_link
typedef int	CVariantProperties_Base::TGene_location
typedef int	CVariantProperties_Base::TEffect
typedef int	CVariantProperties_Base::TMapping
typedef int	CVariantProperties_Base::TMap_weight
typedef int	CVariantProperties_Base::TFrequency_based_validation
typedef int	CVariantProperties_Base::TGenotype
typedef list< int >	CVariantProperties_Base::TProject_data
typedef int	CVariantProperties_Base::TQuality_check
typedef int	CVariantProperties_Base::TConfidence
typedef bool	CVariantProperties_Base::TOther_validation
typedef int	CVariantProperties_Base::TAllele_origin
typedef int	CVariantProperties_Base::TAllele_state
typedef double	CVariantProperties_Base::TAllele_frequency
typedef bool	CVariantProperties_Base::TIs_ancestral_allele
typedef Tparent::CMemberIndex< E_memberIndex, 17 >	CVariantProperties_Base::TmemberIndex
typedef CVariation_inst_Base	CVariation_inst::Tparent
typedef CSerialObject	CVariation_inst_Base::Tparent
typedef int	CVariation_inst_Base::TType
typedef list< CRef< CDelta_item > >	CVariation_inst_Base::TDelta
typedef int	CVariation_inst_Base::TObservation
typedef Tparent::CMemberIndex< E_memberIndex, 4 >	CVariation_inst_Base::TmemberIndex
typedef CSerialObject	CVariation_ref_Base::Tparent
typedef CSerialObject	CVariation_ref_Base::C_Data::Tparent
typedef CSerialObject	CVariation_ref_Base::C_Data::C_Set::Tparent
typedef int	CVariation_ref_Base::C_Data::C_Set::TType
typedef list< CRef< CVariation_ref > >	CVariation_ref_Base::C_Data::C_Set::TVariations
typedef string	CVariation_ref_Base::C_Data::C_Set::TName
typedef Tparent::CMemberIndex< E_memberIndex, 4 >	CVariation_ref_Base::C_Data::C_Set::TmemberIndex
typedef string	CVariation_ref_Base::C_Data::TNote
typedef CVariation_inst	CVariation_ref_Base::C_Data::TInstance
typedef C_Set	CVariation_ref_Base::C_Data::TSet
typedef CSerialObject	CVariation_ref_Base::C_E_Consequence::Tparent
typedef CSerialObject	CVariation_ref_Base::C_E_Consequence::C_Frameshift::Tparent
typedef int	CVariation_ref_Base::C_E_Consequence::C_Frameshift::TPhase
typedef int	CVariation_ref_Base::C_E_Consequence::C_Frameshift::TX_length
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CVariation_ref_Base::C_E_Consequence::C_Frameshift::TmemberIndex
typedef CSerialObject	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::Tparent
typedef string	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::TReference
typedef string	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::TTest
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::TmemberIndex
typedef string	CVariation_ref_Base::C_E_Consequence::TNote
typedef CVariation_ref	CVariation_ref_Base::C_E_Consequence::TVariation
typedef C_Frameshift	CVariation_ref_Base::C_E_Consequence::TFrameshift
typedef C_Loss_of_heterozygosity	CVariation_ref_Base::C_E_Consequence::TLoss_of_heterozygosity
typedef CSerialObject	CVariation_ref_Base::C_E_Somatic_origin::Tparent
typedef CSerialObject	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::Tparent
typedef string	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::TDescription
typedef list< CRef< CDbtag > >	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::TObject_id
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::TmemberIndex
typedef CSubSource	CVariation_ref_Base::C_E_Somatic_origin::TSource
typedef C_Condition	CVariation_ref_Base::C_E_Somatic_origin::TCondition
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CVariation_ref_Base::C_E_Somatic_origin::TmemberIndex
typedef CDbtag	CVariation_ref_Base::TId
typedef CDbtag	CVariation_ref_Base::TParent_id
typedef CObject_id	CVariation_ref_Base::TSample_id
typedef list< CRef< CDbtag > >	CVariation_ref_Base::TOther_ids
typedef string	CVariation_ref_Base::TName
typedef list< string >	CVariation_ref_Base::TSynonyms
typedef string	CVariation_ref_Base::TDescription
typedef list< CRef< CPhenotype > >	CVariation_ref_Base::TPhenotype
typedef list< int >	CVariation_ref_Base::TMethod
typedef list< CRef< CPopulation_data > >	CVariation_ref_Base::TPopulation_data
typedef CVariantProperties	CVariation_ref_Base::TVariant_prop
typedef bool	CVariation_ref_Base::TValidated
typedef list< CRef< CDbtag > >	CVariation_ref_Base::TClinical_test
typedef int	CVariation_ref_Base::TAllele_origin
typedef int	CVariation_ref_Base::TAllele_state
typedef double	CVariation_ref_Base::TAllele_frequency
typedef bool	CVariation_ref_Base::TIs_ancestral_allele
typedef CPub	CVariation_ref_Base::TPub
typedef C_Data	CVariation_ref_Base::TData
typedef C_E_Consequence	CVariation_ref_Base::C_E
typedef list< CRef< C_E_Consequence > >	CVariation_ref_Base::TConsequence
typedef CSeq_loc	CVariation_ref_Base::TLocation
typedef list< CRef< CExt_loc > >	CVariation_ref_Base::TExt_locs
typedef CUser_object	CVariation_ref_Base::TExt
typedef list< CRef< C_E_Somatic_origin > >	CVariation_ref_Base::TSomatic_origin
typedef Tparent::CMemberIndex< E_memberIndex, 25 >	CVariation_ref_Base::TmemberIndex

Enumerations
enum	CDelta_item_Base::C_Seq::E_Choice { CDelta_item_Base::C_Seq::e_not_set = 0 , CDelta_item_Base::C_Seq::e_Literal , CDelta_item_Base::C_Seq::e_Loc , CDelta_item_Base::C_Seq::e_This }
	Choice variants. More...
enum	CDelta_item_Base::C_Seq::E_ChoiceStopper { CDelta_item_Base::C_Seq::e_MaxChoice = 4 }
	Maximum+1 value of the choice variant enumerator. More...
enum	CDelta_item_Base::EAction { CDelta_item_Base::eAction_morph = 0 , CDelta_item_Base::eAction_offset = 1 , CDelta_item_Base::eAction_del_at = 2 , CDelta_item_Base::eAction_ins_before = 3 }
enum class	CDelta_item_Base::E_memberIndex {   CDelta_item_Base::e__allMandatory = 0 , CDelta_item_Base::e_seq , CDelta_item_Base::e_multiplier , CDelta_item_Base::e_multiplier_fuzz ,   CDelta_item_Base::e_action }
enum class	CExt_loc_Base::E_memberIndex { CExt_loc_Base::e__allMandatory = 0 , CExt_loc_Base::e_id , CExt_loc_Base::e_location }
enum	CPhenotype_Base::EClinical_significance {   CPhenotype_Base::eClinical_significance_unknown = 0 , CPhenotype_Base::eClinical_significance_untested = 1 , CPhenotype_Base::eClinical_significance_non_pathogenic = 2 , CPhenotype_Base::eClinical_significance_probable_non_pathogenic = 3 ,   CPhenotype_Base::eClinical_significance_probable_pathogenic = 4 , CPhenotype_Base::eClinical_significance_pathogenic = 5 , CPhenotype_Base::eClinical_significance_drug_response = 6 , CPhenotype_Base::eClinical_significance_histocompatibility = 7 ,   CPhenotype_Base::eClinical_significance_other = 255 }
	does this variant have known clinical significance? More...
enum class	CPhenotype_Base::E_memberIndex {   CPhenotype_Base::e__allMandatory = 0 , CPhenotype_Base::e_source , CPhenotype_Base::e_term , CPhenotype_Base::e_xref ,   CPhenotype_Base::e_clinical_significance }
enum	CPopulation_data_Base::EFlags { CPopulation_data_Base::eFlags_is_default_population = 1 , CPopulation_data_Base::eFlags_is_minor_allele = 2 , CPopulation_data_Base::eFlags_is_rare_allele = 4 }
	This field is an explicit bit-field Valid values should be a bitwise combination (= simple sum) of any of the values below. More...
enum class	CPopulation_data_Base::E_memberIndex {   CPopulation_data_Base::e__allMandatory = 0 , CPopulation_data_Base::e_population , CPopulation_data_Base::e_genotype_frequency , CPopulation_data_Base::e_chromosomes_tested ,   CPopulation_data_Base::e_sample_ids , CPopulation_data_Base::e_allele_frequency , CPopulation_data_Base::e_flags }
enum	CVariantProperties_Base::EResource_link {   CVariantProperties_Base::eResource_link_preserved = 1 , CVariantProperties_Base::eResource_link_provisional = 2 , CVariantProperties_Base::eResource_link_has3D = 4 , CVariantProperties_Base::eResource_link_submitterLinkout = 8 ,   CVariantProperties_Base::eResource_link_clinical = 16 , CVariantProperties_Base::eResource_link_genotypeKit = 32 }
	NOTE: The format for most of these values is as an integer Unless otherwise noted, these integers represent a bitwise OR (= simple sum) of the possible values, and as such, these values represent the specific bit flags that may be set for each of the possible attributes here. More...
enum	CVariantProperties_Base::EGene_location {   CVariantProperties_Base::eGene_location_in_gene = 1 , CVariantProperties_Base::eGene_location_near_gene_5 = 2 , CVariantProperties_Base::eGene_location_near_gene_3 = 4 , CVariantProperties_Base::eGene_location_intron = 8 ,   CVariantProperties_Base::eGene_location_donor = 16 , CVariantProperties_Base::eGene_location_acceptor = 32 , CVariantProperties_Base::eGene_location_utr_5 = 64 , CVariantProperties_Base::eGene_location_utr_3 = 128 ,   CVariantProperties_Base::eGene_location_in_start_codon = 256 , CVariantProperties_Base::eGene_location_in_stop_codon = 512 , CVariantProperties_Base::eGene_location_intergenic = 1024 , CVariantProperties_Base::eGene_location_conserved_noncoding = 2048 }
enum	CVariantProperties_Base::EEffect {   CVariantProperties_Base::eEffect_no_change = 0 , CVariantProperties_Base::eEffect_synonymous = 1 , CVariantProperties_Base::eEffect_nonsense = 2 , CVariantProperties_Base::eEffect_missense = 4 ,   CVariantProperties_Base::eEffect_frameshift = 8 , CVariantProperties_Base::eEffect_up_regulator = 16 , CVariantProperties_Base::eEffect_down_regulator = 32 , CVariantProperties_Base::eEffect_methylation = 64 ,   CVariantProperties_Base::eEffect_stop_gain = 128 , CVariantProperties_Base::eEffect_stop_loss = 256 }
enum	CVariantProperties_Base::EMapping { CVariantProperties_Base::eMapping_has_other_snp = 1 , CVariantProperties_Base::eMapping_has_assembly_conflict = 2 , CVariantProperties_Base::eMapping_is_assembly_specific = 4 }
enum	CVariantProperties_Base::EMap_weight { CVariantProperties_Base::eMap_weight_is_uniquely_placed = 1 , CVariantProperties_Base::eMap_weight_placed_twice_on_same_chrom = 2 , CVariantProperties_Base::eMap_weight_placed_twice_on_diff_chrom = 3 , CVariantProperties_Base::eMap_weight_many_placements = 10 }
	map-weight captures specificity of placement NOTE: This is *NOT* a bitfield More...
enum	CVariantProperties_Base::EFrequency_based_validation {   CVariantProperties_Base::eFrequency_based_validation_is_mutation = 1 , CVariantProperties_Base::eFrequency_based_validation_above_5pct_all = 2 , CVariantProperties_Base::eFrequency_based_validation_above_5pct_1plus = 4 , CVariantProperties_Base::eFrequency_based_validation_validated = 8 ,   CVariantProperties_Base::eFrequency_based_validation_above_1pct_all = 16 , CVariantProperties_Base::eFrequency_based_validation_above_1pct_1plus = 32 }
enum	CVariantProperties_Base::EGenotype { CVariantProperties_Base::eGenotype_in_haplotype_set = 1 , CVariantProperties_Base::eGenotype_has_genotypes = 2 }
enum	CVariantProperties_Base::EQuality_check {   CVariantProperties_Base::eQuality_check_contig_allele_missing = 1 , CVariantProperties_Base::eQuality_check_withdrawn_by_submitter = 2 , CVariantProperties_Base::eQuality_check_non_overlapping_alleles = 4 , CVariantProperties_Base::eQuality_check_strain_specific = 8 ,   CVariantProperties_Base::eQuality_check_genotype_conflict = 16 }
enum	CVariantProperties_Base::EConfidence { CVariantProperties_Base::eConfidence_unknown = 0 , CVariantProperties_Base::eConfidence_likely_artifact = 1 , CVariantProperties_Base::eConfidence_other = 255 }
enum	CVariantProperties_Base::EAllele_origin {   CVariantProperties_Base::eAllele_origin_unknown = 0 , CVariantProperties_Base::eAllele_origin_germline = 1 , CVariantProperties_Base::eAllele_origin_somatic = 2 , CVariantProperties_Base::eAllele_origin_inherited = 4 ,   CVariantProperties_Base::eAllele_origin_paternal = 8 , CVariantProperties_Base::eAllele_origin_maternal = 16 , CVariantProperties_Base::eAllele_origin_de_novo = 32 , CVariantProperties_Base::eAllele_origin_biparental = 64 ,   CVariantProperties_Base::eAllele_origin_uniparental = 128 , CVariantProperties_Base::eAllele_origin_not_tested = 256 , CVariantProperties_Base::eAllele_origin_tested_inconclusive = 512 , CVariantProperties_Base::eAllele_origin_not_reported = 1024 ,   CVariantProperties_Base::eAllele_origin_other = 1073741824 }
	origin of this allele, if known note that these are powers-of-two, and represent bits; thus, we can represent more than one state simultaneously through a bitwise OR More...
enum	CVariantProperties_Base::EAllele_state {   CVariantProperties_Base::eAllele_state_unknown = 0 , CVariantProperties_Base::eAllele_state_homozygous = 1 , CVariantProperties_Base::eAllele_state_heterozygous = 2 , CVariantProperties_Base::eAllele_state_hemizygous = 3 ,   CVariantProperties_Base::eAllele_state_nullizygous = 4 , CVariantProperties_Base::eAllele_state_other = 255 }
	observed allele state, if known NOTE: THIS IS NOT A BITFIELD! More...
enum class	CVariantProperties_Base::E_memberIndex {   CVariantProperties_Base::e__allMandatory = 0 , CVariantProperties_Base::e_version , CVariantProperties_Base::e_resource_link , CVariantProperties_Base::e_gene_location ,   CVariantProperties_Base::e_effect , CVariantProperties_Base::e_mapping , CVariantProperties_Base::e_map_weight , CVariantProperties_Base::e_frequency_based_validation ,   CVariantProperties_Base::e_genotype , CVariantProperties_Base::e_project_data , CVariantProperties_Base::e_quality_check , CVariantProperties_Base::e_confidence ,   CVariantProperties_Base::e_other_validation , CVariantProperties_Base::e_allele_origin , CVariantProperties_Base::e_allele_state , CVariantProperties_Base::e_allele_frequency ,   CVariantProperties_Base::e_is_ancestral_allele }
enum	CVariation_inst_Base::EType {   CVariation_inst_Base::eType_unknown = 0 , CVariation_inst_Base::eType_identity = 1 , CVariation_inst_Base::eType_inv = 2 , CVariation_inst_Base::eType_snv = 3 ,   CVariation_inst_Base::eType_mnp = 4 , CVariation_inst_Base::eType_delins = 5 , CVariation_inst_Base::eType_del = 6 , CVariation_inst_Base::eType_ins = 7 ,   CVariation_inst_Base::eType_microsatellite = 8 , CVariation_inst_Base::eType_transposon = 9 , CVariation_inst_Base::eType_cnv = 10 , CVariation_inst_Base::eType_direct_copy = 11 ,   CVariation_inst_Base::eType_rev_direct_copy = 12 , CVariation_inst_Base::eType_inverted_copy = 13 , CVariation_inst_Base::eType_everted_copy = 14 , CVariation_inst_Base::eType_translocation = 15 ,   CVariation_inst_Base::eType_prot_missense = 16 , CVariation_inst_Base::eType_prot_nonsense = 17 , CVariation_inst_Base::eType_prot_neutral = 18 , CVariation_inst_Base::eType_prot_silent = 19 ,   CVariation_inst_Base::eType_prot_other = 20 , CVariation_inst_Base::eType_other = 255 }
enum	CVariation_inst_Base::EObservation { CVariation_inst_Base::eObservation_asserted = 1 , CVariation_inst_Base::eObservation_reference = 2 , CVariation_inst_Base::eObservation_variant = 4 }
	'observation' is used to label items in a Variation-ref package This field is explicitly a bit-field, so the bitwise OR (= sum) of any of the values may be observed. More...
enum class	CVariation_inst_Base::E_memberIndex { CVariation_inst_Base::e__allMandatory = 0 , CVariation_inst_Base::e_type , CVariation_inst_Base::e_delta , CVariation_inst_Base::e_observation }
enum	CVariation_ref_Base::EMethod_E {   CVariation_ref_Base::eMethod_E_unknown = 0 , CVariation_ref_Base::eMethod_E_bac_acgh = 1 , CVariation_ref_Base::eMethod_E_computational = 2 , CVariation_ref_Base::eMethod_E_curated = 3 ,   CVariation_ref_Base::eMethod_E_digital_array = 4 , CVariation_ref_Base::eMethod_E_expression_array = 5 , CVariation_ref_Base::eMethod_E_fish = 6 , CVariation_ref_Base::eMethod_E_flanking_sequence = 7 ,   CVariation_ref_Base::eMethod_E_maph = 8 , CVariation_ref_Base::eMethod_E_mcd_analysis = 9 , CVariation_ref_Base::eMethod_E_mlpa = 10 , CVariation_ref_Base::eMethod_E_oea_assembly = 11 ,   CVariation_ref_Base::eMethod_E_oligo_acgh = 12 , CVariation_ref_Base::eMethod_E_paired_end = 13 , CVariation_ref_Base::eMethod_E_pcr = 14 , CVariation_ref_Base::eMethod_E_qpcr = 15 ,   CVariation_ref_Base::eMethod_E_read_depth = 16 , CVariation_ref_Base::eMethod_E_roma = 17 , CVariation_ref_Base::eMethod_E_rt_pcr = 18 , CVariation_ref_Base::eMethod_E_sage = 19 ,   CVariation_ref_Base::eMethod_E_sequence_alignment = 20 , CVariation_ref_Base::eMethod_E_sequencing = 21 , CVariation_ref_Base::eMethod_E_snp_array = 22 , CVariation_ref_Base::eMethod_E_snp_genoytyping = 23 ,   CVariation_ref_Base::eMethod_E_southern = 24 , CVariation_ref_Base::eMethod_E_western = 25 , CVariation_ref_Base::eMethod_E_optical_mapping = 26 , CVariation_ref_Base::eMethod_E_other = 255 }
enum	CVariation_ref_Base::EAllele_origin {   CVariation_ref_Base::eAllele_origin_unknown = 0 , CVariation_ref_Base::eAllele_origin_germline = 1 , CVariation_ref_Base::eAllele_origin_somatic = 2 , CVariation_ref_Base::eAllele_origin_inherited = 4 ,   CVariation_ref_Base::eAllele_origin_paternal = 8 , CVariation_ref_Base::eAllele_origin_maternal = 16 , CVariation_ref_Base::eAllele_origin_de_novo = 32 , CVariation_ref_Base::eAllele_origin_biparental = 64 ,   CVariation_ref_Base::eAllele_origin_uniparental = 128 , CVariation_ref_Base::eAllele_origin_not_tested = 256 , CVariation_ref_Base::eAllele_origin_tested_inconclusive = 512 , CVariation_ref_Base::eAllele_origin_other = 1073741824 }
	origin of this allele, if known note that these are powers-of-two, and represent bits; thus, we can represent more than one state simultaneously through a bitwise OR DEPRECATED: new field = VariantProperties.allele-origin More...
enum	CVariation_ref_Base::EAllele_state {   CVariation_ref_Base::eAllele_state_unknown = 0 , CVariation_ref_Base::eAllele_state_homozygous = 1 , CVariation_ref_Base::eAllele_state_heterozygous = 2 , CVariation_ref_Base::eAllele_state_hemizygous = 3 ,   CVariation_ref_Base::eAllele_state_nullizygous = 4 , CVariation_ref_Base::eAllele_state_other = 255 }
	observed allele state, if known DEPRECATED: new field = VariantProperties.allele-state More...
enum	CVariation_ref_Base::C_Data::C_Set::EData_set_type {   CVariation_ref_Base::C_Data::C_Set::eData_set_type_unknown = 0 , CVariation_ref_Base::C_Data::C_Set::eData_set_type_compound = 1 , CVariation_ref_Base::C_Data::C_Set::eData_set_type_products = 2 , CVariation_ref_Base::C_Data::C_Set::eData_set_type_haplotype = 3 ,   CVariation_ref_Base::C_Data::C_Set::eData_set_type_genotype = 4 , CVariation_ref_Base::C_Data::C_Set::eData_set_type_mosaic = 5 , CVariation_ref_Base::C_Data::C_Set::eData_set_type_individual = 6 , CVariation_ref_Base::C_Data::C_Set::eData_set_type_population = 7 ,   CVariation_ref_Base::C_Data::C_Set::eData_set_type_alleles = 8 , CVariation_ref_Base::C_Data::C_Set::eData_set_type_package = 9 , CVariation_ref_Base::C_Data::C_Set::eData_set_type_other = 255 }
enum class	CVariation_ref_Base::C_Data::C_Set::E_memberIndex { CVariation_ref_Base::C_Data::C_Set::e__allMandatory = 0 , CVariation_ref_Base::C_Data::C_Set::e_type , CVariation_ref_Base::C_Data::C_Set::e_variations , CVariation_ref_Base::C_Data::C_Set::e_name }
enum	CVariation_ref_Base::C_Data::E_Choice {   CVariation_ref_Base::C_Data::e_not_set = 0 , CVariation_ref_Base::C_Data::e_Unknown , CVariation_ref_Base::C_Data::e_Note , CVariation_ref_Base::C_Data::e_Uniparental_disomy ,   CVariation_ref_Base::C_Data::e_Instance , CVariation_ref_Base::C_Data::e_Set , CVariation_ref_Base::C_Data::e_Complex }
	Choice variants. More...
enum	CVariation_ref_Base::C_Data::E_ChoiceStopper { CVariation_ref_Base::C_Data::e_MaxChoice = 7 }
	Maximum+1 value of the choice variant enumerator. More...
enum class	CVariation_ref_Base::C_E_Consequence::C_Frameshift::E_memberIndex { CVariation_ref_Base::C_E_Consequence::C_Frameshift::e__allMandatory = 0 , CVariation_ref_Base::C_E_Consequence::C_Frameshift::e_phase , CVariation_ref_Base::C_E_Consequence::C_Frameshift::e_x_length }
enum class	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::E_memberIndex { CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::e__allMandatory = 0 , CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::e_reference , CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::e_test }
enum	CVariation_ref_Base::C_E_Consequence::E_Choice {   CVariation_ref_Base::C_E_Consequence::e_not_set = 0 , CVariation_ref_Base::C_E_Consequence::e_Unknown , CVariation_ref_Base::C_E_Consequence::e_Splicing , CVariation_ref_Base::C_E_Consequence::e_Note ,   CVariation_ref_Base::C_E_Consequence::e_Variation , CVariation_ref_Base::C_E_Consequence::e_Frameshift , CVariation_ref_Base::C_E_Consequence::e_Loss_of_heterozygosity }
	Choice variants. More...
enum	CVariation_ref_Base::C_E_Consequence::E_ChoiceStopper { CVariation_ref_Base::C_E_Consequence::e_MaxChoice = 7 }
	Maximum+1 value of the choice variant enumerator. More...
enum class	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::E_memberIndex { CVariation_ref_Base::C_E_Somatic_origin::C_Condition::e__allMandatory = 0 , CVariation_ref_Base::C_E_Somatic_origin::C_Condition::e_description , CVariation_ref_Base::C_E_Somatic_origin::C_Condition::e_object_id }
enum class	CVariation_ref_Base::C_E_Somatic_origin::E_memberIndex { CVariation_ref_Base::C_E_Somatic_origin::e__allMandatory = 0 , CVariation_ref_Base::C_E_Somatic_origin::e_source , CVariation_ref_Base::C_E_Somatic_origin::e_condition }
enum class	CVariation_ref_Base::E_memberIndex {   CVariation_ref_Base::e__allMandatory = 0 , CVariation_ref_Base::e_id , CVariation_ref_Base::e_parent_id , CVariation_ref_Base::e_sample_id ,   CVariation_ref_Base::e_other_ids , CVariation_ref_Base::e_name , CVariation_ref_Base::e_synonyms , CVariation_ref_Base::e_description ,   CVariation_ref_Base::e_phenotype , CVariation_ref_Base::e_method , CVariation_ref_Base::e_population_data , CVariation_ref_Base::e_variant_prop ,   CVariation_ref_Base::e_validated , CVariation_ref_Base::e_clinical_test , CVariation_ref_Base::e_allele_origin , CVariation_ref_Base::e_allele_state ,   CVariation_ref_Base::e_allele_frequency , CVariation_ref_Base::e_is_ancestral_allele , CVariation_ref_Base::e_pub , CVariation_ref_Base::e_data ,   CVariation_ref_Base::e_consequence , CVariation_ref_Base::e_location , CVariation_ref_Base::e_ext_locs , CVariation_ref_Base::e_ext ,   CVariation_ref_Base::e_somatic_origin }

Functions
	CDelta_item_Base::CDelta_item_Base (void)
virtual	CDelta_item_Base::~CDelta_item_Base (void)
	CDelta_item_Base::DECLARE_INTERNAL_TYPE_INFO ()
	CDelta_item_Base::C_Seq::C_Seq (void)
	CDelta_item_Base::C_Seq::~C_Seq (void)
	CDelta_item_Base::C_Seq::DECLARE_INTERNAL_TYPE_INFO ()
void	CDelta_item_Base::C_Seq::Reset (void)
	Reset the whole object. More...
void	CDelta_item_Base::C_Seq::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CDelta_item_Base::C_Seq::Which (void) const
	Which variant is currently selected. More...
void	CDelta_item_Base::C_Seq::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CDelta_item_Base::C_Seq::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CDelta_item_Base::C_Seq::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CDelta_item_Base::C_Seq::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CDelta_item_Base::C_Seq::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CDelta_item_Base::C_Seq::IsLiteral (void) const
	Check if variant Literal is selected. More...
const TLiteral &	CDelta_item_Base::C_Seq::GetLiteral (void) const
	Get the variant data. More...
TLiteral &	CDelta_item_Base::C_Seq::SetLiteral (void)
	Select the variant. More...
void	CDelta_item_Base::C_Seq::SetLiteral (TLiteral &value)
	Select the variant and set its data. More...
bool	CDelta_item_Base::C_Seq::IsLoc (void) const
	Check if variant Loc is selected. More...
const TLoc &	CDelta_item_Base::C_Seq::GetLoc (void) const
	Get the variant data. More...
TLoc &	CDelta_item_Base::C_Seq::SetLoc (void)
	Select the variant. More...
void	CDelta_item_Base::C_Seq::SetLoc (TLoc &value)
	Select the variant and set its data. More...
bool	CDelta_item_Base::C_Seq::IsThis (void) const
	Check if variant This is selected. More...
void	CDelta_item_Base::C_Seq::SetThis (void)
	Select the variant. More...
	CDelta_item_Base::C_Seq::C_Seq (const C_Seq &)
C_Seq &	CDelta_item_Base::C_Seq::operator= (const C_Seq &)
void	CDelta_item_Base::C_Seq::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CDelta_item_Base::EAction (void)
	Access to EAction's attributes (values, names) as defined in spec. More...
bool	CDelta_item_Base::IsSetSeq (void) const
	Check if a value has been assigned to Seq data member. More...
bool	CDelta_item_Base::CanGetSeq (void) const
	Check if it is safe to call GetSeq method. More...
void	CDelta_item_Base::ResetSeq (void)
	Reset Seq data member. More...
const TSeq &	CDelta_item_Base::GetSeq (void) const
	Get the Seq member data. More...
void	CDelta_item_Base::SetSeq (TSeq &value)
	Assign a value to Seq data member. More...
TSeq &	CDelta_item_Base::SetSeq (void)
	Assign a value to Seq data member. More...
bool	CDelta_item_Base::IsSetMultiplier (void) const
	Multiplier allows representing a tandem, e.g. More...
bool	CDelta_item_Base::CanGetMultiplier (void) const
	Check if it is safe to call GetMultiplier method. More...
void	CDelta_item_Base::ResetMultiplier (void)
	Reset Multiplier data member. More...
TMultiplier	CDelta_item_Base::GetMultiplier (void) const
	Get the Multiplier member data. More...
void	CDelta_item_Base::SetMultiplier (TMultiplier value)
	Assign a value to Multiplier data member. More...
TMultiplier &	CDelta_item_Base::SetMultiplier (void)
	Assign a value to Multiplier data member. More...
bool	CDelta_item_Base::IsSetMultiplier_fuzz (void) const
	Check if a value has been assigned to Multiplier_fuzz data member. More...
bool	CDelta_item_Base::CanGetMultiplier_fuzz (void) const
	Check if it is safe to call GetMultiplier_fuzz method. More...
void	CDelta_item_Base::ResetMultiplier_fuzz (void)
	Reset Multiplier_fuzz data member. More...
const TMultiplier_fuzz &	CDelta_item_Base::GetMultiplier_fuzz (void) const
	Get the Multiplier_fuzz member data. More...
void	CDelta_item_Base::SetMultiplier_fuzz (TMultiplier_fuzz &value)
	Assign a value to Multiplier_fuzz data member. More...
TMultiplier_fuzz &	CDelta_item_Base::SetMultiplier_fuzz (void)
	Assign a value to Multiplier_fuzz data member. More...
bool	CDelta_item_Base::IsSetAction (void) const
	Check if a value has been assigned to Action data member. More...
bool	CDelta_item_Base::CanGetAction (void) const
	Check if it is safe to call GetAction method. More...
void	CDelta_item_Base::ResetAction (void)
	Reset Action data member. More...
void	CDelta_item_Base::SetDefaultAction (void)
	Assign default value to Action data member. More...
TAction	CDelta_item_Base::GetAction (void) const
	Get the Action member data. More...
void	CDelta_item_Base::SetAction (TAction value)
	Assign a value to Action data member. More...
TAction &	CDelta_item_Base::SetAction (void)
	Assign a value to Action data member. More...
virtual void	CDelta_item_Base::Reset (void)
	Reset the whole object. More...
	CDelta_item_Base::CDelta_item_Base (const CDelta_item_Base &)
CDelta_item_Base &	CDelta_item_Base::operator= (const CDelta_item_Base &)
	CExt_loc::CExt_loc (void)
	CExt_loc::~CExt_loc (void)
	CExt_loc::CExt_loc (const CExt_loc &value)
CExt_loc &	CExt_loc::operator= (const CExt_loc &value)
	CExt_loc_Base::CExt_loc_Base (void)
virtual	CExt_loc_Base::~CExt_loc_Base (void)
	CExt_loc_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CExt_loc_Base::IsSetId (void) const
	Check if a value has been assigned to Id data member. More...
bool	CExt_loc_Base::CanGetId (void) const
	Check if it is safe to call GetId method. More...
void	CExt_loc_Base::ResetId (void)
	Reset Id data member. More...
const TId &	CExt_loc_Base::GetId (void) const
	Get the Id member data. More...
void	CExt_loc_Base::SetId (TId &value)
	Assign a value to Id data member. More...
TId &	CExt_loc_Base::SetId (void)
	Assign a value to Id data member. More...
bool	CExt_loc_Base::IsSetLocation (void) const
	Check if a value has been assigned to Location data member. More...
bool	CExt_loc_Base::CanGetLocation (void) const
	Check if it is safe to call GetLocation method. More...
void	CExt_loc_Base::ResetLocation (void)
	Reset Location data member. More...
const TLocation &	CExt_loc_Base::GetLocation (void) const
	Get the Location member data. More...
void	CExt_loc_Base::SetLocation (TLocation &value)
	Assign a value to Location data member. More...
TLocation &	CExt_loc_Base::SetLocation (void)
	Assign a value to Location data member. More...
virtual void	CExt_loc_Base::Reset (void)
	Reset the whole object. More...
	CExt_loc_Base::CExt_loc_Base (const CExt_loc_Base &)
CExt_loc_Base &	CExt_loc_Base::operator= (const CExt_loc_Base &)
	CPhenotype::CPhenotype (void)
	CPhenotype::~CPhenotype (void)
	CPhenotype::CPhenotype (const CPhenotype &value)
CPhenotype &	CPhenotype::operator= (const CPhenotype &value)
	CPhenotype_Base::CPhenotype_Base (void)
virtual	CPhenotype_Base::~CPhenotype_Base (void)
	CPhenotype_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CPhenotype_Base::EClinical_significance (void)
	Access to EClinical_significance's attributes (values, names) as defined in spec. More...
bool	CPhenotype_Base::IsSetSource (void) const
	Check if a value has been assigned to Source data member. More...
bool	CPhenotype_Base::CanGetSource (void) const
	Check if it is safe to call GetSource method. More...
void	CPhenotype_Base::ResetSource (void)
	Reset Source data member. More...
const TSource &	CPhenotype_Base::GetSource (void) const
	Get the Source member data. More...
void	CPhenotype_Base::SetSource (const TSource &value)
	Assign a value to Source data member. More...
void	CPhenotype_Base::SetSource (TSource &&value)
TSource &	CPhenotype_Base::SetSource (void)
	Assign a value to Source data member. More...
bool	CPhenotype_Base::IsSetTerm (void) const
	Check if a value has been assigned to Term data member. More...
bool	CPhenotype_Base::CanGetTerm (void) const
	Check if it is safe to call GetTerm method. More...
void	CPhenotype_Base::ResetTerm (void)
	Reset Term data member. More...
const TTerm &	CPhenotype_Base::GetTerm (void) const
	Get the Term member data. More...
void	CPhenotype_Base::SetTerm (const TTerm &value)
	Assign a value to Term data member. More...
void	CPhenotype_Base::SetTerm (TTerm &&value)
TTerm &	CPhenotype_Base::SetTerm (void)
	Assign a value to Term data member. More...
bool	CPhenotype_Base::IsSetXref (void) const
	Check if a value has been assigned to Xref data member. More...
bool	CPhenotype_Base::CanGetXref (void) const
	Check if it is safe to call GetXref method. More...
void	CPhenotype_Base::ResetXref (void)
	Reset Xref data member. More...
const TXref &	CPhenotype_Base::GetXref (void) const
	Get the Xref member data. More...
TXref &	CPhenotype_Base::SetXref (void)
	Assign a value to Xref data member. More...
bool	CPhenotype_Base::IsSetClinical_significance (void) const
	Check if a value has been assigned to Clinical_significance data member. More...
bool	CPhenotype_Base::CanGetClinical_significance (void) const
	Check if it is safe to call GetClinical_significance method. More...
void	CPhenotype_Base::ResetClinical_significance (void)
	Reset Clinical_significance data member. More...
TClinical_significance	CPhenotype_Base::GetClinical_significance (void) const
	Get the Clinical_significance member data. More...
void	CPhenotype_Base::SetClinical_significance (TClinical_significance value)
	Assign a value to Clinical_significance data member. More...
TClinical_significance &	CPhenotype_Base::SetClinical_significance (void)
	Assign a value to Clinical_significance data member. More...
virtual void	CPhenotype_Base::Reset (void)
	Reset the whole object. More...
	CPhenotype_Base::CPhenotype_Base (const CPhenotype_Base &)
CPhenotype_Base &	CPhenotype_Base::operator= (const CPhenotype_Base &)
	CPopulation_data::CPopulation_data (void)
	CPopulation_data::~CPopulation_data (void)
	CPopulation_data::CPopulation_data (const CPopulation_data &value)
CPopulation_data &	CPopulation_data::operator= (const CPopulation_data &value)
	CPopulation_data_Base::CPopulation_data_Base (void)
virtual	CPopulation_data_Base::~CPopulation_data_Base (void)
	CPopulation_data_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CPopulation_data_Base::EFlags (void)
	Access to EFlags's attributes (values, names) as defined in spec. More...
bool	CPopulation_data_Base::IsSetPopulation (void) const
	assayed population (e.g. More...
bool	CPopulation_data_Base::CanGetPopulation (void) const
	Check if it is safe to call GetPopulation method. More...
void	CPopulation_data_Base::ResetPopulation (void)
	Reset Population data member. More...
const TPopulation &	CPopulation_data_Base::GetPopulation (void) const
	Get the Population member data. More...
void	CPopulation_data_Base::SetPopulation (const TPopulation &value)
	Assign a value to Population data member. More...
void	CPopulation_data_Base::SetPopulation (TPopulation &&value)
TPopulation &	CPopulation_data_Base::SetPopulation (void)
	Assign a value to Population data member. More...
bool	CPopulation_data_Base::IsSetGenotype_frequency (void) const
	Check if a value has been assigned to Genotype_frequency data member. More...
bool	CPopulation_data_Base::CanGetGenotype_frequency (void) const
	Check if it is safe to call GetGenotype_frequency method. More...
void	CPopulation_data_Base::ResetGenotype_frequency (void)
	Reset Genotype_frequency data member. More...
TGenotype_frequency	CPopulation_data_Base::GetGenotype_frequency (void) const
	Get the Genotype_frequency member data. More...
void	CPopulation_data_Base::SetGenotype_frequency (TGenotype_frequency value)
	Assign a value to Genotype_frequency data member. More...
TGenotype_frequency &	CPopulation_data_Base::SetGenotype_frequency (void)
	Assign a value to Genotype_frequency data member. More...
bool	CPopulation_data_Base::IsSetChromosomes_tested (void) const
	Check if a value has been assigned to Chromosomes_tested data member. More...
bool	CPopulation_data_Base::CanGetChromosomes_tested (void) const
	Check if it is safe to call GetChromosomes_tested method. More...
void	CPopulation_data_Base::ResetChromosomes_tested (void)
	Reset Chromosomes_tested data member. More...
TChromosomes_tested	CPopulation_data_Base::GetChromosomes_tested (void) const
	Get the Chromosomes_tested member data. More...
void	CPopulation_data_Base::SetChromosomes_tested (TChromosomes_tested value)
	Assign a value to Chromosomes_tested data member. More...
TChromosomes_tested &	CPopulation_data_Base::SetChromosomes_tested (void)
	Assign a value to Chromosomes_tested data member. More...
bool	CPopulation_data_Base::IsSetSample_ids (void) const
	Check if a value has been assigned to Sample_ids data member. More...
bool	CPopulation_data_Base::CanGetSample_ids (void) const
	Check if it is safe to call GetSample_ids method. More...
void	CPopulation_data_Base::ResetSample_ids (void)
	Reset Sample_ids data member. More...
const TSample_ids &	CPopulation_data_Base::GetSample_ids (void) const
	Get the Sample_ids member data. More...
TSample_ids &	CPopulation_data_Base::SetSample_ids (void)
	Assign a value to Sample_ids data member. More...
bool	CPopulation_data_Base::IsSetAllele_frequency (void) const
	Check if a value has been assigned to Allele_frequency data member. More...
bool	CPopulation_data_Base::CanGetAllele_frequency (void) const
	Check if it is safe to call GetAllele_frequency method. More...
void	CPopulation_data_Base::ResetAllele_frequency (void)
	Reset Allele_frequency data member. More...
TAllele_frequency	CPopulation_data_Base::GetAllele_frequency (void) const
	Get the Allele_frequency member data. More...
void	CPopulation_data_Base::SetAllele_frequency (TAllele_frequency value)
	Assign a value to Allele_frequency data member. More...
TAllele_frequency &	CPopulation_data_Base::SetAllele_frequency (void)
	Assign a value to Allele_frequency data member. More...
bool	CPopulation_data_Base::IsSetFlags (void) const
	Check if a value has been assigned to Flags data member. More...
bool	CPopulation_data_Base::CanGetFlags (void) const
	Check if it is safe to call GetFlags method. More...
void	CPopulation_data_Base::ResetFlags (void)
	Reset Flags data member. More...
TFlags	CPopulation_data_Base::GetFlags (void) const
	Get the Flags member data. More...
void	CPopulation_data_Base::SetFlags (TFlags value)
	Assign a value to Flags data member. More...
TFlags &	CPopulation_data_Base::SetFlags (void)
	Assign a value to Flags data member. More...
virtual void	CPopulation_data_Base::Reset (void)
	Reset the whole object. More...
	CPopulation_data_Base::CPopulation_data_Base (const CPopulation_data_Base &)
CPopulation_data_Base &	CPopulation_data_Base::operator= (const CPopulation_data_Base &)
	CVariantProperties_Base::CVariantProperties_Base (void)
virtual	CVariantProperties_Base::~CVariantProperties_Base (void)
	CVariantProperties_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CVariantProperties_Base::EResource_link (void)
	Access to EResource_link's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CVariantProperties_Base::EGene_location (void)
	Access to EGene_location's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CVariantProperties_Base::EEffect (void)
	Access to EEffect's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CVariantProperties_Base::EMapping (void)
	Access to EMapping's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CVariantProperties_Base::EMap_weight (void)
	Access to EMap_weight's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CVariantProperties_Base::EFrequency_based_validation (void)
	Access to EFrequency_based_validation's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CVariantProperties_Base::EGenotype (void)
	Access to EGenotype's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CVariantProperties_Base::EQuality_check (void)
	Access to EQuality_check's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CVariantProperties_Base::EConfidence (void)
	Access to EConfidence's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CVariantProperties_Base::EAllele_origin (void)
	Access to EAllele_origin's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CVariantProperties_Base::EAllele_state (void)
	Access to EAllele_state's attributes (values, names) as defined in spec. More...
bool	CVariantProperties_Base::IsSetVersion (void) const
	Check if a value has been assigned to Version data member. More...
bool	CVariantProperties_Base::CanGetVersion (void) const
	Check if it is safe to call GetVersion method. More...
void	CVariantProperties_Base::ResetVersion (void)
	Reset Version data member. More...
TVersion	CVariantProperties_Base::GetVersion (void) const
	Get the Version member data. More...
void	CVariantProperties_Base::SetVersion (TVersion value)
	Assign a value to Version data member. More...
TVersion &	CVariantProperties_Base::SetVersion (void)
	Assign a value to Version data member. More...
bool	CVariantProperties_Base::IsSetResource_link (void) const
	Check if a value has been assigned to Resource_link data member. More...
bool	CVariantProperties_Base::CanGetResource_link (void) const
	Check if it is safe to call GetResource_link method. More...
void	CVariantProperties_Base::ResetResource_link (void)
	Reset Resource_link data member. More...
TResource_link	CVariantProperties_Base::GetResource_link (void) const
	Get the Resource_link member data. More...
void	CVariantProperties_Base::SetResource_link (TResource_link value)
	Assign a value to Resource_link data member. More...
TResource_link &	CVariantProperties_Base::SetResource_link (void)
	Assign a value to Resource_link data member. More...
bool	CVariantProperties_Base::IsSetGene_location (void) const
	Check if a value has been assigned to Gene_location data member. More...
bool	CVariantProperties_Base::CanGetGene_location (void) const
	Check if it is safe to call GetGene_location method. More...
void	CVariantProperties_Base::ResetGene_location (void)
	Reset Gene_location data member. More...
TGene_location	CVariantProperties_Base::GetGene_location (void) const
	Get the Gene_location member data. More...
void	CVariantProperties_Base::SetGene_location (TGene_location value)
	Assign a value to Gene_location data member. More...
TGene_location &	CVariantProperties_Base::SetGene_location (void)
	Assign a value to Gene_location data member. More...
bool	CVariantProperties_Base::IsSetEffect (void) const
	Check if a value has been assigned to Effect data member. More...
bool	CVariantProperties_Base::CanGetEffect (void) const
	Check if it is safe to call GetEffect method. More...
void	CVariantProperties_Base::ResetEffect (void)
	Reset Effect data member. More...
TEffect	CVariantProperties_Base::GetEffect (void) const
	Get the Effect member data. More...
void	CVariantProperties_Base::SetEffect (TEffect value)
	Assign a value to Effect data member. More...
TEffect &	CVariantProperties_Base::SetEffect (void)
	Assign a value to Effect data member. More...
bool	CVariantProperties_Base::IsSetMapping (void) const
	Check if a value has been assigned to Mapping data member. More...
bool	CVariantProperties_Base::CanGetMapping (void) const
	Check if it is safe to call GetMapping method. More...
void	CVariantProperties_Base::ResetMapping (void)
	Reset Mapping data member. More...
TMapping	CVariantProperties_Base::GetMapping (void) const
	Get the Mapping member data. More...
void	CVariantProperties_Base::SetMapping (TMapping value)
	Assign a value to Mapping data member. More...
TMapping &	CVariantProperties_Base::SetMapping (void)
	Assign a value to Mapping data member. More...
bool	CVariantProperties_Base::IsSetMap_weight (void) const
	Check if a value has been assigned to Map_weight data member. More...
bool	CVariantProperties_Base::CanGetMap_weight (void) const
	Check if it is safe to call GetMap_weight method. More...
void	CVariantProperties_Base::ResetMap_weight (void)
	Reset Map_weight data member. More...
TMap_weight	CVariantProperties_Base::GetMap_weight (void) const
	Get the Map_weight member data. More...
void	CVariantProperties_Base::SetMap_weight (TMap_weight value)
	Assign a value to Map_weight data member. More...
TMap_weight &	CVariantProperties_Base::SetMap_weight (void)
	Assign a value to Map_weight data member. More...
bool	CVariantProperties_Base::IsSetFrequency_based_validation (void) const
	Check if a value has been assigned to Frequency_based_validation data member. More...
bool	CVariantProperties_Base::CanGetFrequency_based_validation (void) const
	Check if it is safe to call GetFrequency_based_validation method. More...
void	CVariantProperties_Base::ResetFrequency_based_validation (void)
	Reset Frequency_based_validation data member. More...
TFrequency_based_validation	CVariantProperties_Base::GetFrequency_based_validation (void) const
	Get the Frequency_based_validation member data. More...
void	CVariantProperties_Base::SetFrequency_based_validation (TFrequency_based_validation value)
	Assign a value to Frequency_based_validation data member. More...
TFrequency_based_validation &	CVariantProperties_Base::SetFrequency_based_validation (void)
	Assign a value to Frequency_based_validation data member. More...
bool	CVariantProperties_Base::IsSetGenotype (void) const
	Check if a value has been assigned to Genotype data member. More...
bool	CVariantProperties_Base::CanGetGenotype (void) const
	Check if it is safe to call GetGenotype method. More...
void	CVariantProperties_Base::ResetGenotype (void)
	Reset Genotype data member. More...
TGenotype	CVariantProperties_Base::GetGenotype (void) const
	Get the Genotype member data. More...
void	CVariantProperties_Base::SetGenotype (TGenotype value)
	Assign a value to Genotype data member. More...
TGenotype &	CVariantProperties_Base::SetGenotype (void)
	Assign a value to Genotype data member. More...
bool	CVariantProperties_Base::IsSetProject_data (void) const
	project IDs are IDs from BioProjects in order to report information about project relationships, we require projects to be registered This field in many ways duplicates dbxrefs; however, the intention of this field is to more adequately reflect ownership and data source More...
bool	CVariantProperties_Base::CanGetProject_data (void) const
	Check if it is safe to call GetProject_data method. More...
void	CVariantProperties_Base::ResetProject_data (void)
	Reset Project_data data member. More...
const TProject_data &	CVariantProperties_Base::GetProject_data (void) const
	Get the Project_data member data. More...
TProject_data &	CVariantProperties_Base::SetProject_data (void)
	Assign a value to Project_data data member. More...
bool	CVariantProperties_Base::IsSetQuality_check (void) const
	Check if a value has been assigned to Quality_check data member. More...
bool	CVariantProperties_Base::CanGetQuality_check (void) const
	Check if it is safe to call GetQuality_check method. More...
void	CVariantProperties_Base::ResetQuality_check (void)
	Reset Quality_check data member. More...
TQuality_check	CVariantProperties_Base::GetQuality_check (void) const
	Get the Quality_check member data. More...
void	CVariantProperties_Base::SetQuality_check (TQuality_check value)
	Assign a value to Quality_check data member. More...
TQuality_check &	CVariantProperties_Base::SetQuality_check (void)
	Assign a value to Quality_check data member. More...
bool	CVariantProperties_Base::IsSetConfidence (void) const
	Check if a value has been assigned to Confidence data member. More...
bool	CVariantProperties_Base::CanGetConfidence (void) const
	Check if it is safe to call GetConfidence method. More...
void	CVariantProperties_Base::ResetConfidence (void)
	Reset Confidence data member. More...
TConfidence	CVariantProperties_Base::GetConfidence (void) const
	Get the Confidence member data. More...
void	CVariantProperties_Base::SetConfidence (TConfidence value)
	Assign a value to Confidence data member. More...
TConfidence &	CVariantProperties_Base::SetConfidence (void)
	Assign a value to Confidence data member. More...
bool	CVariantProperties_Base::IsSetOther_validation (void) const
	has this variant been validated? While a boolean flag offers no subtle distinctions of validation methods, occasionally it is only known as a single boolean value NOTE: this flag is redundant and should be omitted if more comprehensive validation information is present Check if a value has been assigned to Other_validation data member. More...
bool	CVariantProperties_Base::CanGetOther_validation (void) const
	Check if it is safe to call GetOther_validation method. More...
void	CVariantProperties_Base::ResetOther_validation (void)
	Reset Other_validation data member. More...
TOther_validation	CVariantProperties_Base::GetOther_validation (void) const
	Get the Other_validation member data. More...
void	CVariantProperties_Base::SetOther_validation (TOther_validation value)
	Assign a value to Other_validation data member. More...
TOther_validation &	CVariantProperties_Base::SetOther_validation (void)
	Assign a value to Other_validation data member. More...
bool	CVariantProperties_Base::IsSetAllele_origin (void) const
	Check if a value has been assigned to Allele_origin data member. More...
bool	CVariantProperties_Base::CanGetAllele_origin (void) const
	Check if it is safe to call GetAllele_origin method. More...
void	CVariantProperties_Base::ResetAllele_origin (void)
	Reset Allele_origin data member. More...
TAllele_origin	CVariantProperties_Base::GetAllele_origin (void) const
	Get the Allele_origin member data. More...
void	CVariantProperties_Base::SetAllele_origin (TAllele_origin value)
	Assign a value to Allele_origin data member. More...
TAllele_origin &	CVariantProperties_Base::SetAllele_origin (void)
	Assign a value to Allele_origin data member. More...
bool	CVariantProperties_Base::IsSetAllele_state (void) const
	Check if a value has been assigned to Allele_state data member. More...
bool	CVariantProperties_Base::CanGetAllele_state (void) const
	Check if it is safe to call GetAllele_state method. More...
void	CVariantProperties_Base::ResetAllele_state (void)
	Reset Allele_state data member. More...
TAllele_state	CVariantProperties_Base::GetAllele_state (void) const
	Get the Allele_state member data. More...
void	CVariantProperties_Base::SetAllele_state (TAllele_state value)
	Assign a value to Allele_state data member. More...
TAllele_state &	CVariantProperties_Base::SetAllele_state (void)
	Assign a value to Allele_state data member. More...
bool	CVariantProperties_Base::IsSetAllele_frequency (void) const
	NOTE: 'allele-frequency' here refers to the minor allele frequency of the default population Check if a value has been assigned to Allele_frequency data member. More...
bool	CVariantProperties_Base::CanGetAllele_frequency (void) const
	Check if it is safe to call GetAllele_frequency method. More...
void	CVariantProperties_Base::ResetAllele_frequency (void)
	Reset Allele_frequency data member. More...
TAllele_frequency	CVariantProperties_Base::GetAllele_frequency (void) const
	Get the Allele_frequency member data. More...
void	CVariantProperties_Base::SetAllele_frequency (TAllele_frequency value)
	Assign a value to Allele_frequency data member. More...
TAllele_frequency &	CVariantProperties_Base::SetAllele_frequency (void)
	Assign a value to Allele_frequency data member. More...
bool	CVariantProperties_Base::IsSetIs_ancestral_allele (void) const
	is this variant the ancestral allele? Check if a value has been assigned to Is_ancestral_allele data member. More...
bool	CVariantProperties_Base::CanGetIs_ancestral_allele (void) const
	Check if it is safe to call GetIs_ancestral_allele method. More...
void	CVariantProperties_Base::ResetIs_ancestral_allele (void)
	Reset Is_ancestral_allele data member. More...
TIs_ancestral_allele	CVariantProperties_Base::GetIs_ancestral_allele (void) const
	Get the Is_ancestral_allele member data. More...
void	CVariantProperties_Base::SetIs_ancestral_allele (TIs_ancestral_allele value)
	Assign a value to Is_ancestral_allele data member. More...
TIs_ancestral_allele &	CVariantProperties_Base::SetIs_ancestral_allele (void)
	Assign a value to Is_ancestral_allele data member. More...
virtual void	CVariantProperties_Base::Reset (void)
	Reset the whole object. More...
	CVariantProperties_Base::CVariantProperties_Base (const CVariantProperties_Base &)
CVariantProperties_Base &	CVariantProperties_Base::operator= (const CVariantProperties_Base &)
	CVariation_inst::CVariation_inst (void)
	CVariation_inst::~CVariation_inst (void)
	CVariation_inst::CVariation_inst (const CVariation_inst &value)
CVariation_inst &	CVariation_inst::operator= (const CVariation_inst &value)
	CVariation_inst_Base::CVariation_inst_Base (void)
virtual	CVariation_inst_Base::~CVariation_inst_Base (void)
	CVariation_inst_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CVariation_inst_Base::EType (void)
	Access to EType's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CVariation_inst_Base::EObservation (void)
	Access to EObservation's attributes (values, names) as defined in spec. More...
bool	CVariation_inst_Base::IsSetType (void) const
	Check if a value has been assigned to Type data member. More...
bool	CVariation_inst_Base::CanGetType (void) const
	Check if it is safe to call GetType method. More...
void	CVariation_inst_Base::ResetType (void)
	Reset Type data member. More...
TType	CVariation_inst_Base::GetType (void) const
	Get the Type member data. More...
void	CVariation_inst_Base::SetType (TType value)
	Assign a value to Type data member. More...
TType &	CVariation_inst_Base::SetType (void)
	Assign a value to Type data member. More...
bool	CVariation_inst_Base::IsSetDelta (void) const
	Sequence that replaces the location, in biological order. More...
bool	CVariation_inst_Base::CanGetDelta (void) const
	Check if it is safe to call GetDelta method. More...
void	CVariation_inst_Base::ResetDelta (void)
	Reset Delta data member. More...
const TDelta &	CVariation_inst_Base::GetDelta (void) const
	Get the Delta member data. More...
TDelta &	CVariation_inst_Base::SetDelta (void)
	Assign a value to Delta data member. More...
bool	CVariation_inst_Base::IsSetObservation (void) const
	Check if a value has been assigned to Observation data member. More...
bool	CVariation_inst_Base::CanGetObservation (void) const
	Check if it is safe to call GetObservation method. More...
void	CVariation_inst_Base::ResetObservation (void)
	Reset Observation data member. More...
TObservation	CVariation_inst_Base::GetObservation (void) const
	Get the Observation member data. More...
void	CVariation_inst_Base::SetObservation (TObservation value)
	Assign a value to Observation data member. More...
TObservation &	CVariation_inst_Base::SetObservation (void)
	Assign a value to Observation data member. More...
virtual void	CVariation_inst_Base::Reset (void)
	Reset the whole object. More...
	CVariation_inst_Base::CVariation_inst_Base (const CVariation_inst_Base &)
CVariation_inst_Base &	CVariation_inst_Base::operator= (const CVariation_inst_Base &)
	CVariation_ref_Base::CVariation_ref_Base (void)
virtual	CVariation_ref_Base::~CVariation_ref_Base (void)
	CVariation_ref_Base::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CVariation_ref_Base::EMethod_E (void)
	Access to EMethod_E's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CVariation_ref_Base::EAllele_origin (void)
	Access to EAllele_origin's attributes (values, names) as defined in spec. More...
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CVariation_ref_Base::EAllele_state (void)
	Access to EAllele_state's attributes (values, names) as defined in spec. More...
	CVariation_ref_Base::C_Data::C_Data (void)
	CVariation_ref_Base::C_Data::~C_Data (void)
	CVariation_ref_Base::C_Data::DECLARE_INTERNAL_TYPE_INFO ()
	CVariation_ref_Base::C_Data::C_Set::C_Set (void)
	CVariation_ref_Base::C_Data::C_Set::~C_Set (void)
	CVariation_ref_Base::C_Data::C_Set::DECLARE_INTERNAL_TYPE_INFO ()
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME()	CVariation_ref_Base::C_Data::C_Set::EData_set_type (void)
	Access to EData_set_type's attributes (values, names) as defined in spec. More...
bool	CVariation_ref_Base::C_Data::C_Set::IsSetType (void) const
	Check if a value has been assigned to Type data member. More...
bool	CVariation_ref_Base::C_Data::C_Set::CanGetType (void) const
	Check if it is safe to call GetType method. More...
void	CVariation_ref_Base::C_Data::C_Set::ResetType (void)
	Reset Type data member. More...
TType	CVariation_ref_Base::C_Data::C_Set::GetType (void) const
	Get the Type member data. More...
void	CVariation_ref_Base::C_Data::C_Set::SetType (TType value)
	Assign a value to Type data member. More...
TType &	CVariation_ref_Base::C_Data::C_Set::SetType (void)
	Assign a value to Type data member. More...
bool	CVariation_ref_Base::C_Data::C_Set::IsSetVariations (void) const
	Check if a value has been assigned to Variations data member. More...
bool	CVariation_ref_Base::C_Data::C_Set::CanGetVariations (void) const
	Check if it is safe to call GetVariations method. More...
void	CVariation_ref_Base::C_Data::C_Set::ResetVariations (void)
	Reset Variations data member. More...
const TVariations &	CVariation_ref_Base::C_Data::C_Set::GetVariations (void) const
	Get the Variations member data. More...
TVariations &	CVariation_ref_Base::C_Data::C_Set::SetVariations (void)
	Assign a value to Variations data member. More...
bool	CVariation_ref_Base::C_Data::C_Set::IsSetName (void) const
	Check if a value has been assigned to Name data member. More...
bool	CVariation_ref_Base::C_Data::C_Set::CanGetName (void) const
	Check if it is safe to call GetName method. More...
void	CVariation_ref_Base::C_Data::C_Set::ResetName (void)
	Reset Name data member. More...
const TName &	CVariation_ref_Base::C_Data::C_Set::GetName (void) const
	Get the Name member data. More...
void	CVariation_ref_Base::C_Data::C_Set::SetName (const TName &value)
	Assign a value to Name data member. More...
void	CVariation_ref_Base::C_Data::C_Set::SetName (TName &&value)
TName &	CVariation_ref_Base::C_Data::C_Set::SetName (void)
	Assign a value to Name data member. More...
void	CVariation_ref_Base::C_Data::C_Set::Reset (void)
	Reset the whole object. More...
	CVariation_ref_Base::C_Data::C_Set::C_Set (const C_Set &)
C_Set &	CVariation_ref_Base::C_Data::C_Set::operator= (const C_Set &)
void	CVariation_ref_Base::C_Data::Reset (void)
	Reset the whole object. More...
void	CVariation_ref_Base::C_Data::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CVariation_ref_Base::C_Data::Which (void) const
	Which variant is currently selected. More...
void	CVariation_ref_Base::C_Data::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CVariation_ref_Base::C_Data::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CVariation_ref_Base::C_Data::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CVariation_ref_Base::C_Data::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CVariation_ref_Base::C_Data::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CVariation_ref_Base::C_Data::IsUnknown (void) const
	Check if variant Unknown is selected. More...
void	CVariation_ref_Base::C_Data::SetUnknown (void)
	Select the variant. More...
bool	CVariation_ref_Base::C_Data::IsNote (void) const
	Check if variant Note is selected. More...
const TNote &	CVariation_ref_Base::C_Data::GetNote (void) const
	Get the variant data. More...
TNote &	CVariation_ref_Base::C_Data::SetNote (void)
	Select the variant. More...
void	CVariation_ref_Base::C_Data::SetNote (const TNote &value)
	Select the variant and set its data. More...
bool	CVariation_ref_Base::C_Data::IsUniparental_disomy (void) const
	Check if variant Uniparental_disomy is selected. More...
void	CVariation_ref_Base::C_Data::SetUniparental_disomy (void)
	Select the variant. More...
bool	CVariation_ref_Base::C_Data::IsInstance (void) const
	Check if variant Instance is selected. More...
const TInstance &	CVariation_ref_Base::C_Data::GetInstance (void) const
	Get the variant data. More...
TInstance &	CVariation_ref_Base::C_Data::SetInstance (void)
	Select the variant. More...
void	CVariation_ref_Base::C_Data::SetInstance (TInstance &value)
	Select the variant and set its data. More...
bool	CVariation_ref_Base::C_Data::IsSet (void) const
	Check if variant Set is selected. More...
const TSet &	CVariation_ref_Base::C_Data::GetSet (void) const
	Get the variant data. More...
TSet &	CVariation_ref_Base::C_Data::SetSet (void)
	Select the variant. More...
void	CVariation_ref_Base::C_Data::SetSet (TSet &value)
	Select the variant and set its data. More...
bool	CVariation_ref_Base::C_Data::IsComplex (void) const
	Check if variant Complex is selected. More...
void	CVariation_ref_Base::C_Data::SetComplex (void)
	Select the variant. More...
	CVariation_ref_Base::C_Data::C_Data (const C_Data &)
C_Data &	CVariation_ref_Base::C_Data::operator= (const C_Data &)
void	CVariation_ref_Base::C_Data::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
	CVariation_ref_Base::C_E_Consequence::C_E_Consequence (void)
	CVariation_ref_Base::C_E_Consequence::~C_E_Consequence (void)
	CVariation_ref_Base::C_E_Consequence::DECLARE_INTERNAL_TYPE_INFO ()
	CVariation_ref_Base::C_E_Consequence::C_Frameshift::C_Frameshift (void)
	CVariation_ref_Base::C_E_Consequence::C_Frameshift::~C_Frameshift (void)
	CVariation_ref_Base::C_E_Consequence::C_Frameshift::DECLARE_INTERNAL_TYPE_INFO ()
bool	CVariation_ref_Base::C_E_Consequence::C_Frameshift::IsSetPhase (void) const
	Check if a value has been assigned to Phase data member. More...
bool	CVariation_ref_Base::C_E_Consequence::C_Frameshift::CanGetPhase (void) const
	Check if it is safe to call GetPhase method. More...
void	CVariation_ref_Base::C_E_Consequence::C_Frameshift::ResetPhase (void)
	Reset Phase data member. More...
TPhase	CVariation_ref_Base::C_E_Consequence::C_Frameshift::GetPhase (void) const
	Get the Phase member data. More...
void	CVariation_ref_Base::C_E_Consequence::C_Frameshift::SetPhase (TPhase value)
	Assign a value to Phase data member. More...
TPhase &	CVariation_ref_Base::C_E_Consequence::C_Frameshift::SetPhase (void)
	Assign a value to Phase data member. More...
bool	CVariation_ref_Base::C_E_Consequence::C_Frameshift::IsSetX_length (void) const
	Check if a value has been assigned to X_length data member. More...
bool	CVariation_ref_Base::C_E_Consequence::C_Frameshift::CanGetX_length (void) const
	Check if it is safe to call GetX_length method. More...
void	CVariation_ref_Base::C_E_Consequence::C_Frameshift::ResetX_length (void)
	Reset X_length data member. More...
TX_length	CVariation_ref_Base::C_E_Consequence::C_Frameshift::GetX_length (void) const
	Get the X_length member data. More...
void	CVariation_ref_Base::C_E_Consequence::C_Frameshift::SetX_length (TX_length value)
	Assign a value to X_length data member. More...
TX_length &	CVariation_ref_Base::C_E_Consequence::C_Frameshift::SetX_length (void)
	Assign a value to X_length data member. More...
void	CVariation_ref_Base::C_E_Consequence::C_Frameshift::Reset (void)
	Reset the whole object. More...
	CVariation_ref_Base::C_E_Consequence::C_Frameshift::C_Frameshift (const C_Frameshift &)
C_Frameshift &	CVariation_ref_Base::C_E_Consequence::C_Frameshift::operator= (const C_Frameshift &)
	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::C_Loss_of_heterozygosity (void)
	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::~C_Loss_of_heterozygosity (void)
	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::DECLARE_INTERNAL_TYPE_INFO ()
bool	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::IsSetReference (void) const
	In germline comparison, it will be reference genome assembly (default) or reference/normal population. More...
bool	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::CanGetReference (void) const
	Check if it is safe to call GetReference method. More...
void	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::ResetReference (void)
	Reset Reference data member. More...
const TReference &	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::GetReference (void) const
	Get the Reference member data. More...
void	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::SetReference (const TReference &value)
	Assign a value to Reference data member. More...
void	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::SetReference (TReference &&value)
TReference &	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::SetReference (void)
	Assign a value to Reference data member. More...
bool	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::IsSetTest (void) const
	Name of the testing subject type or the testing tissue. More...
bool	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::CanGetTest (void) const
	Check if it is safe to call GetTest method. More...
void	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::ResetTest (void)
	Reset Test data member. More...
const TTest &	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::GetTest (void) const
	Get the Test member data. More...
void	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::SetTest (const TTest &value)
	Assign a value to Test data member. More...
void	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::SetTest (TTest &&value)
TTest &	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::SetTest (void)
	Assign a value to Test data member. More...
void	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::Reset (void)
	Reset the whole object. More...
	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::C_Loss_of_heterozygosity (const C_Loss_of_heterozygosity &)
C_Loss_of_heterozygosity &	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::operator= (const C_Loss_of_heterozygosity &)
void	CVariation_ref_Base::C_E_Consequence::Reset (void)
	Reset the whole object. More...
void	CVariation_ref_Base::C_E_Consequence::ResetSelection (void)
	Reset the selection (set it to e_not_set). More...
E_Choice	CVariation_ref_Base::C_E_Consequence::Which (void) const
	Which variant is currently selected. More...
void	CVariation_ref_Base::C_E_Consequence::CheckSelected (E_Choice index) const
	Verify selection, throw exception if it differs from the expected. More...
void	CVariation_ref_Base::C_E_Consequence::ThrowInvalidSelection (E_Choice index) const
	Throw 'InvalidSelection' exception. More...
static string	CVariation_ref_Base::C_E_Consequence::SelectionName (E_Choice index)
	Retrieve selection name (for diagnostic purposes). More...
void	CVariation_ref_Base::C_E_Consequence::Select (E_Choice index, EResetVariant reset=eDoResetVariant)
	Select the requested variant if needed. More...
void	CVariation_ref_Base::C_E_Consequence::Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)
	Select the requested variant if needed, allocating CObject variants from memory pool. More...
bool	CVariation_ref_Base::C_E_Consequence::IsUnknown (void) const
	Check if variant Unknown is selected. More...
void	CVariation_ref_Base::C_E_Consequence::SetUnknown (void)
	Select the variant. More...
bool	CVariation_ref_Base::C_E_Consequence::IsSplicing (void) const
	Check if variant Splicing is selected. More...
void	CVariation_ref_Base::C_E_Consequence::SetSplicing (void)
	Select the variant. More...
bool	CVariation_ref_Base::C_E_Consequence::IsNote (void) const
	Check if variant Note is selected. More...
const TNote &	CVariation_ref_Base::C_E_Consequence::GetNote (void) const
	Get the variant data. More...
TNote &	CVariation_ref_Base::C_E_Consequence::SetNote (void)
	Select the variant. More...
void	CVariation_ref_Base::C_E_Consequence::SetNote (const TNote &value)
	Select the variant and set its data. More...
bool	CVariation_ref_Base::C_E_Consequence::IsVariation (void) const
	Check if variant Variation is selected. More...
const TVariation &	CVariation_ref_Base::C_E_Consequence::GetVariation (void) const
	Get the variant data. More...
TVariation &	CVariation_ref_Base::C_E_Consequence::SetVariation (void)
	Select the variant. More...
void	CVariation_ref_Base::C_E_Consequence::SetVariation (TVariation &value)
	Select the variant and set its data. More...
bool	CVariation_ref_Base::C_E_Consequence::IsFrameshift (void) const
	Check if variant Frameshift is selected. More...
const TFrameshift &	CVariation_ref_Base::C_E_Consequence::GetFrameshift (void) const
	Get the variant data. More...
TFrameshift &	CVariation_ref_Base::C_E_Consequence::SetFrameshift (void)
	Select the variant. More...
void	CVariation_ref_Base::C_E_Consequence::SetFrameshift (TFrameshift &value)
	Select the variant and set its data. More...
bool	CVariation_ref_Base::C_E_Consequence::IsLoss_of_heterozygosity (void) const
	Check if variant Loss_of_heterozygosity is selected. More...
const TLoss_of_heterozygosity &	CVariation_ref_Base::C_E_Consequence::GetLoss_of_heterozygosity (void) const
	Get the variant data. More...
TLoss_of_heterozygosity &	CVariation_ref_Base::C_E_Consequence::SetLoss_of_heterozygosity (void)
	Select the variant. More...
void	CVariation_ref_Base::C_E_Consequence::SetLoss_of_heterozygosity (TLoss_of_heterozygosity &value)
	Select the variant and set its data. More...
	CVariation_ref_Base::C_E_Consequence::C_E_Consequence (const C_E_Consequence &)
C_E_Consequence &	CVariation_ref_Base::C_E_Consequence::operator= (const C_E_Consequence &)
void	CVariation_ref_Base::C_E_Consequence::DoSelect (E_Choice index, CObjectMemoryPool *pool=0)
	CVariation_ref_Base::C_E_Somatic_origin::C_E_Somatic_origin (void)
	CVariation_ref_Base::C_E_Somatic_origin::~C_E_Somatic_origin (void)
	CVariation_ref_Base::C_E_Somatic_origin::DECLARE_INTERNAL_TYPE_INFO ()
	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::C_Condition (void)
	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::~C_Condition (void)
	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::DECLARE_INTERNAL_TYPE_INFO ()
bool	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::IsSetDescription (void) const
	Check if a value has been assigned to Description data member. More...
bool	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::CanGetDescription (void) const
	Check if it is safe to call GetDescription method. More...
void	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::ResetDescription (void)
	Reset Description data member. More...
const TDescription &	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::GetDescription (void) const
	Get the Description member data. More...
void	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::SetDescription (const TDescription &value)
	Assign a value to Description data member. More...
void	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::SetDescription (TDescription &&value)
TDescription &	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::SetDescription (void)
	Assign a value to Description data member. More...
bool	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::IsSetObject_id (void) const
	reference to BioTerm / other descriptive database Check if a value has been assigned to Object_id data member. More...
bool	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::CanGetObject_id (void) const
	Check if it is safe to call GetObject_id method. More...
void	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::ResetObject_id (void)
	Reset Object_id data member. More...
const TObject_id &	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::GetObject_id (void) const
	Get the Object_id member data. More...
TObject_id &	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::SetObject_id (void)
	Assign a value to Object_id data member. More...
void	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::Reset (void)
	Reset the whole object. More...
	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::C_Condition (const C_Condition &)
C_Condition &	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::operator= (const C_Condition &)
bool	CVariation_ref_Base::C_E_Somatic_origin::IsSetSource (void) const
	description of the somatic origin itself Check if a value has been assigned to Source data member. More...
bool	CVariation_ref_Base::C_E_Somatic_origin::CanGetSource (void) const
	Check if it is safe to call GetSource method. More...
void	CVariation_ref_Base::C_E_Somatic_origin::ResetSource (void)
	Reset Source data member. More...
const TSource &	CVariation_ref_Base::C_E_Somatic_origin::GetSource (void) const
	Get the Source member data. More...
void	CVariation_ref_Base::C_E_Somatic_origin::SetSource (TSource &value)
	Assign a value to Source data member. More...
TSource &	CVariation_ref_Base::C_E_Somatic_origin::SetSource (void)
	Assign a value to Source data member. More...
bool	CVariation_ref_Base::C_E_Somatic_origin::IsSetCondition (void) const
	Check if a value has been assigned to Condition data member. More...
bool	CVariation_ref_Base::C_E_Somatic_origin::CanGetCondition (void) const
	Check if it is safe to call GetCondition method. More...
void	CVariation_ref_Base::C_E_Somatic_origin::ResetCondition (void)
	Reset Condition data member. More...
const TCondition &	CVariation_ref_Base::C_E_Somatic_origin::GetCondition (void) const
	Get the Condition member data. More...
void	CVariation_ref_Base::C_E_Somatic_origin::SetCondition (TCondition &value)
	Assign a value to Condition data member. More...
TCondition &	CVariation_ref_Base::C_E_Somatic_origin::SetCondition (void)
	Assign a value to Condition data member. More...
void	CVariation_ref_Base::C_E_Somatic_origin::Reset (void)
	Reset the whole object. More...
	CVariation_ref_Base::C_E_Somatic_origin::C_E_Somatic_origin (const C_E_Somatic_origin &)
C_E_Somatic_origin &	CVariation_ref_Base::C_E_Somatic_origin::operator= (const C_E_Somatic_origin &)
bool	CVariation_ref_Base::IsSetId (void) const
	ids (i.e., SNP rsid / ssid, dbVar nsv/nssv) expected values include 'dbSNP|rs12334', 'dbSNP|ss12345', 'dbVar|nsv1' More...
bool	CVariation_ref_Base::CanGetId (void) const
	Check if it is safe to call GetId method. More...
void	CVariation_ref_Base::ResetId (void)
	Reset Id data member. More...
const TId &	CVariation_ref_Base::GetId (void) const
	Get the Id member data. More...
void	CVariation_ref_Base::SetId (TId &value)
	Assign a value to Id data member. More...
TId &	CVariation_ref_Base::SetId (void)
	Assign a value to Id data member. More...
bool	CVariation_ref_Base::IsSetParent_id (void) const
	Check if a value has been assigned to Parent_id data member. More...
bool	CVariation_ref_Base::CanGetParent_id (void) const
	Check if it is safe to call GetParent_id method. More...
void	CVariation_ref_Base::ResetParent_id (void)
	Reset Parent_id data member. More...
const TParent_id &	CVariation_ref_Base::GetParent_id (void) const
	Get the Parent_id member data. More...
void	CVariation_ref_Base::SetParent_id (TParent_id &value)
	Assign a value to Parent_id data member. More...
TParent_id &	CVariation_ref_Base::SetParent_id (void)
	Assign a value to Parent_id data member. More...
bool	CVariation_ref_Base::IsSetSample_id (void) const
	Check if a value has been assigned to Sample_id data member. More...
bool	CVariation_ref_Base::CanGetSample_id (void) const
	Check if it is safe to call GetSample_id method. More...
void	CVariation_ref_Base::ResetSample_id (void)
	Reset Sample_id data member. More...
const TSample_id &	CVariation_ref_Base::GetSample_id (void) const
	Get the Sample_id member data. More...
void	CVariation_ref_Base::SetSample_id (TSample_id &value)
	Assign a value to Sample_id data member. More...
TSample_id &	CVariation_ref_Base::SetSample_id (void)
	Assign a value to Sample_id data member. More...
bool	CVariation_ref_Base::IsSetOther_ids (void) const
	Check if a value has been assigned to Other_ids data member. More...
bool	CVariation_ref_Base::CanGetOther_ids (void) const
	Check if it is safe to call GetOther_ids method. More...
void	CVariation_ref_Base::ResetOther_ids (void)
	Reset Other_ids data member. More...
const TOther_ids &	CVariation_ref_Base::GetOther_ids (void) const
	Get the Other_ids member data. More...
TOther_ids &	CVariation_ref_Base::SetOther_ids (void)
	Assign a value to Other_ids data member. More...
bool	CVariation_ref_Base::IsSetName (void) const
	names and synonyms some variants have well-known canonical names and possible accepted synonyms Check if a value has been assigned to Name data member. More...
bool	CVariation_ref_Base::CanGetName (void) const
	Check if it is safe to call GetName method. More...
void	CVariation_ref_Base::ResetName (void)
	Reset Name data member. More...
const TName &	CVariation_ref_Base::GetName (void) const
	Get the Name member data. More...
void	CVariation_ref_Base::SetName (const TName &value)
	Assign a value to Name data member. More...
void	CVariation_ref_Base::SetName (TName &&value)
TName &	CVariation_ref_Base::SetName (void)
	Assign a value to Name data member. More...
bool	CVariation_ref_Base::IsSetSynonyms (void) const
	Check if a value has been assigned to Synonyms data member. More...
bool	CVariation_ref_Base::CanGetSynonyms (void) const
	Check if it is safe to call GetSynonyms method. More...
void	CVariation_ref_Base::ResetSynonyms (void)
	Reset Synonyms data member. More...
const TSynonyms &	CVariation_ref_Base::GetSynonyms (void) const
	Get the Synonyms member data. More...
TSynonyms &	CVariation_ref_Base::SetSynonyms (void)
	Assign a value to Synonyms data member. More...
bool	CVariation_ref_Base::IsSetDescription (void) const
	tag for comment and descriptions Check if a value has been assigned to Description data member. More...
bool	CVariation_ref_Base::CanGetDescription (void) const
	Check if it is safe to call GetDescription method. More...
void	CVariation_ref_Base::ResetDescription (void)
	Reset Description data member. More...
const TDescription &	CVariation_ref_Base::GetDescription (void) const
	Get the Description member data. More...
void	CVariation_ref_Base::SetDescription (const TDescription &value)
	Assign a value to Description data member. More...
void	CVariation_ref_Base::SetDescription (TDescription &&value)
TDescription &	CVariation_ref_Base::SetDescription (void)
	Assign a value to Description data member. More...
bool	CVariation_ref_Base::IsSetPhenotype (void) const
	phenotype Check if a value has been assigned to Phenotype data member. More...
bool	CVariation_ref_Base::CanGetPhenotype (void) const
	Check if it is safe to call GetPhenotype method. More...
void	CVariation_ref_Base::ResetPhenotype (void)
	Reset Phenotype data member. More...
const TPhenotype &	CVariation_ref_Base::GetPhenotype (void) const
	Get the Phenotype member data. More...
TPhenotype &	CVariation_ref_Base::SetPhenotype (void)
	Assign a value to Phenotype data member. More...
bool	CVariation_ref_Base::IsSetMethod (void) const
	Check if a value has been assigned to Method data member. More...
bool	CVariation_ref_Base::CanGetMethod (void) const
	Check if it is safe to call GetMethod method. More...
void	CVariation_ref_Base::ResetMethod (void)
	Reset Method data member. More...
const TMethod &	CVariation_ref_Base::GetMethod (void) const
	Get the Method member data. More...
TMethod &	CVariation_ref_Base::SetMethod (void)
	Assign a value to Method data member. More...
bool	CVariation_ref_Base::IsSetPopulation_data (void) const
	Note about SNP representation and pretinent fields: allele-frequency, population, quality-codes: The case of multiple alleles for a SNP would be described by parent-feature of type Variation-set.diff-alleles, where the child features of type Variation-inst, all at the same location, would describe individual alleles. More...
bool	CVariation_ref_Base::CanGetPopulation_data (void) const
	Check if it is safe to call GetPopulation_data method. More...
void	CVariation_ref_Base::ResetPopulation_data (void)
	Reset Population_data data member. More...
const TPopulation_data &	CVariation_ref_Base::GetPopulation_data (void) const
	Get the Population_data member data. More...
TPopulation_data &	CVariation_ref_Base::SetPopulation_data (void)
	Assign a value to Population_data data member. More...
bool	CVariation_ref_Base::IsSetVariant_prop (void) const
	variant properties bit fields Check if a value has been assigned to Variant_prop data member. More...
bool	CVariation_ref_Base::CanGetVariant_prop (void) const
	Check if it is safe to call GetVariant_prop method. More...
void	CVariation_ref_Base::ResetVariant_prop (void)
	Reset Variant_prop data member. More...
const TVariant_prop &	CVariation_ref_Base::GetVariant_prop (void) const
	Get the Variant_prop member data. More...
void	CVariation_ref_Base::SetVariant_prop (TVariant_prop &value)
	Assign a value to Variant_prop data member. More...
TVariant_prop &	CVariation_ref_Base::SetVariant_prop (void)
	Assign a value to Variant_prop data member. More...
bool	CVariation_ref_Base::IsSetValidated (void) const
	has this variant been validated? DEPRECATED: new field = VariantProperties.other-validation Check if a value has been assigned to Validated data member. More...
bool	CVariation_ref_Base::CanGetValidated (void) const
	Check if it is safe to call GetValidated method. More...
void	CVariation_ref_Base::ResetValidated (void)
	Reset Validated data member. More...
TValidated	CVariation_ref_Base::GetValidated (void) const
	Get the Validated member data. More...
void	CVariation_ref_Base::SetValidated (TValidated value)
	Assign a value to Validated data member. More...
TValidated &	CVariation_ref_Base::SetValidated (void)
	Assign a value to Validated data member. More...
bool	CVariation_ref_Base::IsSetClinical_test (void) const
	link-outs to GeneTests database DEPRECATED - do not use Check if a value has been assigned to Clinical_test data member. More...
bool	CVariation_ref_Base::CanGetClinical_test (void) const
	Check if it is safe to call GetClinical_test method. More...
void	CVariation_ref_Base::ResetClinical_test (void)
	Reset Clinical_test data member. More...
const TClinical_test &	CVariation_ref_Base::GetClinical_test (void) const
	Get the Clinical_test member data. More...
TClinical_test &	CVariation_ref_Base::SetClinical_test (void)
	Assign a value to Clinical_test data member. More...
bool	CVariation_ref_Base::IsSetAllele_origin (void) const
	Check if a value has been assigned to Allele_origin data member. More...
bool	CVariation_ref_Base::CanGetAllele_origin (void) const
	Check if it is safe to call GetAllele_origin method. More...
void	CVariation_ref_Base::ResetAllele_origin (void)
	Reset Allele_origin data member. More...
TAllele_origin	CVariation_ref_Base::GetAllele_origin (void) const
	Get the Allele_origin member data. More...
void	CVariation_ref_Base::SetAllele_origin (TAllele_origin value)
	Assign a value to Allele_origin data member. More...
TAllele_origin &	CVariation_ref_Base::SetAllele_origin (void)
	Assign a value to Allele_origin data member. More...
bool	CVariation_ref_Base::IsSetAllele_state (void) const
	Check if a value has been assigned to Allele_state data member. More...
bool	CVariation_ref_Base::CanGetAllele_state (void) const
	Check if it is safe to call GetAllele_state method. More...
void	CVariation_ref_Base::ResetAllele_state (void)
	Reset Allele_state data member. More...
TAllele_state	CVariation_ref_Base::GetAllele_state (void) const
	Get the Allele_state member data. More...
void	CVariation_ref_Base::SetAllele_state (TAllele_state value)
	Assign a value to Allele_state data member. More...
TAllele_state &	CVariation_ref_Base::SetAllele_state (void)
	Assign a value to Allele_state data member. More...
bool	CVariation_ref_Base::IsSetAllele_frequency (void) const
	NOTE: 'allele-frequency' here refers to the minor allele frequency of the default population DEPRECATED: new field = VariantProperties.allele-frequency Check if a value has been assigned to Allele_frequency data member. More...
bool	CVariation_ref_Base::CanGetAllele_frequency (void) const
	Check if it is safe to call GetAllele_frequency method. More...
void	CVariation_ref_Base::ResetAllele_frequency (void)
	Reset Allele_frequency data member. More...
TAllele_frequency	CVariation_ref_Base::GetAllele_frequency (void) const
	Get the Allele_frequency member data. More...
void	CVariation_ref_Base::SetAllele_frequency (TAllele_frequency value)
	Assign a value to Allele_frequency data member. More...
TAllele_frequency &	CVariation_ref_Base::SetAllele_frequency (void)
	Assign a value to Allele_frequency data member. More...
bool	CVariation_ref_Base::IsSetIs_ancestral_allele (void) const
	is this variant the ancestral allele? DEPRECATED: new field = VariantProperties.is-ancestral-allele Check if a value has been assigned to Is_ancestral_allele data member. More...
bool	CVariation_ref_Base::CanGetIs_ancestral_allele (void) const
	Check if it is safe to call GetIs_ancestral_allele method. More...
void	CVariation_ref_Base::ResetIs_ancestral_allele (void)
	Reset Is_ancestral_allele data member. More...
TIs_ancestral_allele	CVariation_ref_Base::GetIs_ancestral_allele (void) const
	Get the Is_ancestral_allele member data. More...
void	CVariation_ref_Base::SetIs_ancestral_allele (TIs_ancestral_allele value)
	Assign a value to Is_ancestral_allele data member. More...
TIs_ancestral_allele &	CVariation_ref_Base::SetIs_ancestral_allele (void)
	Assign a value to Is_ancestral_allele data member. More...
bool	CVariation_ref_Base::IsSetPub (void) const
	publication support. More...
bool	CVariation_ref_Base::CanGetPub (void) const
	Check if it is safe to call GetPub method. More...
void	CVariation_ref_Base::ResetPub (void)
	Reset Pub data member. More...
const TPub &	CVariation_ref_Base::GetPub (void) const
	Get the Pub member data. More...
void	CVariation_ref_Base::SetPub (TPub &value)
	Assign a value to Pub data member. More...
TPub &	CVariation_ref_Base::SetPub (void)
	Assign a value to Pub data member. More...
bool	CVariation_ref_Base::IsSetData (void) const
	Check if a value has been assigned to Data data member. More...
bool	CVariation_ref_Base::CanGetData (void) const
	Check if it is safe to call GetData method. More...
void	CVariation_ref_Base::ResetData (void)
	Reset Data data member. More...
const TData &	CVariation_ref_Base::GetData (void) const
	Get the Data member data. More...
void	CVariation_ref_Base::SetData (TData &value)
	Assign a value to Data data member. More...
TData &	CVariation_ref_Base::SetData (void)
	Assign a value to Data data member. More...
bool	CVariation_ref_Base::IsSetConsequence (void) const
	Check if a value has been assigned to Consequence data member. More...
bool	CVariation_ref_Base::CanGetConsequence (void) const
	Check if it is safe to call GetConsequence method. More...
void	CVariation_ref_Base::ResetConsequence (void)
	Reset Consequence data member. More...
const TConsequence &	CVariation_ref_Base::GetConsequence (void) const
	Get the Consequence member data. More...
TConsequence &	CVariation_ref_Base::SetConsequence (void)
	Assign a value to Consequence data member. More...
bool	CVariation_ref_Base::IsSetLocation (void) const
	Observed location, if different from the parent set or feature.location. More...
bool	CVariation_ref_Base::CanGetLocation (void) const
	Check if it is safe to call GetLocation method. More...
void	CVariation_ref_Base::ResetLocation (void)
	Reset Location data member. More...
const TLocation &	CVariation_ref_Base::GetLocation (void) const
	Get the Location member data. More...
void	CVariation_ref_Base::SetLocation (TLocation &value)
	Assign a value to Location data member. More...
TLocation &	CVariation_ref_Base::SetLocation (void)
	Assign a value to Location data member. More...
bool	CVariation_ref_Base::IsSetExt_locs (void) const
	reference other locs, e.g. More...
bool	CVariation_ref_Base::CanGetExt_locs (void) const
	Check if it is safe to call GetExt_locs method. More...
void	CVariation_ref_Base::ResetExt_locs (void)
	Reset Ext_locs data member. More...
const TExt_locs &	CVariation_ref_Base::GetExt_locs (void) const
	Get the Ext_locs member data. More...
TExt_locs &	CVariation_ref_Base::SetExt_locs (void)
	Assign a value to Ext_locs data member. More...
bool	CVariation_ref_Base::IsSetExt (void) const
	DEPRECATED - do not use; use Seq-feat.exts instead Check if a value has been assigned to Ext data member. More...
bool	CVariation_ref_Base::CanGetExt (void) const
	Check if it is safe to call GetExt method. More...
void	CVariation_ref_Base::ResetExt (void)
	Reset Ext data member. More...
const TExt &	CVariation_ref_Base::GetExt (void) const
	Get the Ext member data. More...
void	CVariation_ref_Base::SetExt (TExt &value)
	Assign a value to Ext data member. More...
TExt &	CVariation_ref_Base::SetExt (void)
	Assign a value to Ext data member. More...
bool	CVariation_ref_Base::IsSetSomatic_origin (void) const
	Check if a value has been assigned to Somatic_origin data member. More...
bool	CVariation_ref_Base::CanGetSomatic_origin (void) const
	Check if it is safe to call GetSomatic_origin method. More...
void	CVariation_ref_Base::ResetSomatic_origin (void)
	Reset Somatic_origin data member. More...
const TSomatic_origin &	CVariation_ref_Base::GetSomatic_origin (void) const
	Get the Somatic_origin member data. More...
TSomatic_origin &	CVariation_ref_Base::SetSomatic_origin (void)
	Assign a value to Somatic_origin data member. More...
virtual void	CVariation_ref_Base::Reset (void)
	Reset the whole object. More...
	CVariation_ref_Base::CVariation_ref_Base (const CVariation_ref_Base &)
CVariation_ref_Base &	CVariation_ref_Base::operator= (const CVariation_ref_Base &)

Variables
E_Choice	CDelta_item_Base::C_Seq::m_choice
static const char *const	CDelta_item_Base::C_Seq::sm_SelectionNames []
NCBI_NS_NCBI::CSerialObject *   CDelta_item_Base::C_Seq::m_object
union {
NCBI_NS_NCBI::CSerialObject *   CDelta_item_Base::C_Seq::m_object
};
Uint4	CDelta_item_Base::m_set_State [1]
CRef< TSeq >	CDelta_item_Base::m_Seq
int	CDelta_item_Base::m_Multiplier
CRef< TMultiplier_fuzz >	CDelta_item_Base::m_Multiplier_fuzz
int	CDelta_item_Base::m_Action
Uint4	CExt_loc_Base::m_set_State [1]
CRef< TId >	CExt_loc_Base::m_Id
CRef< TLocation >	CExt_loc_Base::m_Location
Uint4	CPhenotype_Base::m_set_State [1]
string	CPhenotype_Base::m_Source
string	CPhenotype_Base::m_Term
list< CRef< CDbtag > >	CPhenotype_Base::m_Xref
int	CPhenotype_Base::m_Clinical_significance
Uint4	CPopulation_data_Base::m_set_State [1]
string	CPopulation_data_Base::m_Population
double	CPopulation_data_Base::m_Genotype_frequency
int	CPopulation_data_Base::m_Chromosomes_tested
list< CRef< CObject_id > >	CPopulation_data_Base::m_Sample_ids
double	CPopulation_data_Base::m_Allele_frequency
int	CPopulation_data_Base::m_Flags
Uint4	CVariantProperties_Base::m_set_State [1]
int	CVariantProperties_Base::m_Version
int	CVariantProperties_Base::m_Resource_link
int	CVariantProperties_Base::m_Gene_location
int	CVariantProperties_Base::m_Effect
int	CVariantProperties_Base::m_Mapping
int	CVariantProperties_Base::m_Map_weight
int	CVariantProperties_Base::m_Frequency_based_validation
int	CVariantProperties_Base::m_Genotype
list< int >	CVariantProperties_Base::m_Project_data
int	CVariantProperties_Base::m_Quality_check
int	CVariantProperties_Base::m_Confidence
bool	CVariantProperties_Base::m_Other_validation
int	CVariantProperties_Base::m_Allele_origin
int	CVariantProperties_Base::m_Allele_state
double	CVariantProperties_Base::m_Allele_frequency
bool	CVariantProperties_Base::m_Is_ancestral_allele
Uint4	CVariation_inst_Base::m_set_State [1]
int	CVariation_inst_Base::m_Type
list< CRef< CDelta_item > >	CVariation_inst_Base::m_Delta
int	CVariation_inst_Base::m_Observation
Uint4	CVariation_ref_Base::C_Data::C_Set::m_set_State [1]
int	CVariation_ref_Base::C_Data::C_Set::m_Type
list< CRef< CVariation_ref > >	CVariation_ref_Base::C_Data::C_Set::m_Variations
string	CVariation_ref_Base::C_Data::C_Set::m_Name
E_Choice	CVariation_ref_Base::C_Data::m_choice
static const char *const	CVariation_ref_Base::C_Data::sm_SelectionNames []
NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CVariation_ref_Base::C_Data::m_string
NCBI_NS_NCBI::CSerialObject *   CVariation_ref_Base::C_Data::m_object
union {
NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CVariation_ref_Base::C_Data::m_string
NCBI_NS_NCBI::CSerialObject *   CVariation_ref_Base::C_Data::m_object
};
Uint4	CVariation_ref_Base::C_E_Consequence::C_Frameshift::m_set_State [1]
int	CVariation_ref_Base::C_E_Consequence::C_Frameshift::m_Phase
int	CVariation_ref_Base::C_E_Consequence::C_Frameshift::m_X_length
Uint4	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::m_set_State [1]
string	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::m_Reference
string	CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::m_Test
E_Choice	CVariation_ref_Base::C_E_Consequence::m_choice
static const char *const	CVariation_ref_Base::C_E_Consequence::sm_SelectionNames []
NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CVariation_ref_Base::C_E_Consequence::m_string
NCBI_NS_NCBI::CSerialObject *   CVariation_ref_Base::C_E_Consequence::m_object
union {
NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string >   CVariation_ref_Base::C_E_Consequence::m_string
NCBI_NS_NCBI::CSerialObject *   CVariation_ref_Base::C_E_Consequence::m_object
};
Uint4	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::m_set_State [1]
string	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::m_Description
list< CRef< CDbtag > >	CVariation_ref_Base::C_E_Somatic_origin::C_Condition::m_Object_id
Uint4	CVariation_ref_Base::C_E_Somatic_origin::m_set_State [1]
CRef< TSource >	CVariation_ref_Base::C_E_Somatic_origin::m_Source
CRef< TCondition >	CVariation_ref_Base::C_E_Somatic_origin::m_Condition
Uint4	CVariation_ref_Base::m_set_State [2]
CRef< TId >	CVariation_ref_Base::m_Id
CRef< TParent_id >	CVariation_ref_Base::m_Parent_id
CRef< TSample_id >	CVariation_ref_Base::m_Sample_id
list< CRef< CDbtag > >	CVariation_ref_Base::m_Other_ids
string	CVariation_ref_Base::m_Name
list< string >	CVariation_ref_Base::m_Synonyms
string	CVariation_ref_Base::m_Description
list< CRef< CPhenotype > >	CVariation_ref_Base::m_Phenotype
list< int >	CVariation_ref_Base::m_Method
list< CRef< CPopulation_data > >	CVariation_ref_Base::m_Population_data
CRef< TVariant_prop >	CVariation_ref_Base::m_Variant_prop
bool	CVariation_ref_Base::m_Validated
list< CRef< CDbtag > >	CVariation_ref_Base::m_Clinical_test
int	CVariation_ref_Base::m_Allele_origin
int	CVariation_ref_Base::m_Allele_state
double	CVariation_ref_Base::m_Allele_frequency
bool	CVariation_ref_Base::m_Is_ancestral_allele
CRef< TPub >	CVariation_ref_Base::m_Pub
CRef< TData >	CVariation_ref_Base::m_Data
list< CRef< C_E_Consequence > >	CVariation_ref_Base::m_Consequence
CRef< TLocation >	CVariation_ref_Base::m_Location
list< CRef< CExt_loc > >	CVariation_ref_Base::m_Ext_locs
CRef< TExt >	CVariation_ref_Base::m_Ext
list< CRef< C_E_Somatic_origin > >	CVariation_ref_Base::m_Somatic_origin

Detailed Description

Typedef Documentation

C_E

typedef C_E_Consequence CVariation_ref_Base::C_E

Definition at line 1299 of file Variation_ref_.hpp.

TAction

typedef int CDelta_item_Base::TAction

Definition at line 263 of file Delta_item_.hpp.

TAllele_frequency [1/3]

typedef double CPopulation_data_Base::TAllele_frequency

Definition at line 106 of file Population_data_.hpp.

TAllele_frequency [2/3]

typedef double CVariantProperties_Base::TAllele_frequency

Definition at line 290 of file VariantProperties_.hpp.

TAllele_frequency [3/3]

typedef double CVariation_ref_Base::TAllele_frequency

Definition at line 1295 of file Variation_ref_.hpp.

TAllele_origin [1/2]

typedef int CVariantProperties_Base::TAllele_origin

Definition at line 288 of file VariantProperties_.hpp.

TAllele_origin [2/2]

typedef int CVariation_ref_Base::TAllele_origin

Definition at line 1293 of file Variation_ref_.hpp.

TAllele_state [1/2]

typedef int CVariantProperties_Base::TAllele_state

Definition at line 289 of file VariantProperties_.hpp.

TAllele_state [2/2]

typedef int CVariation_ref_Base::TAllele_state

Definition at line 1294 of file Variation_ref_.hpp.

TChromosomes_tested

typedef int CPopulation_data_Base::TChromosomes_tested

Definition at line 104 of file Population_data_.hpp.

TClinical_significance

typedef int CPhenotype_Base::TClinical_significance

Definition at line 109 of file Phenotype_.hpp.

TClinical_test

typedef list< CRef< CDbtag > > CVariation_ref_Base::TClinical_test

Definition at line 1292 of file Variation_ref_.hpp.

TCondition

typedef C_Condition CVariation_ref_Base::C_E_Somatic_origin::TCondition

Definition at line 1177 of file Variation_ref_.hpp.

TConfidence

typedef int CVariantProperties_Base::TConfidence

Definition at line 286 of file VariantProperties_.hpp.

TConsequence

typedef list< CRef< C_E_Consequence > > CVariation_ref_Base::TConsequence

Definition at line 1300 of file Variation_ref_.hpp.

TData

typedef C_Data CVariation_ref_Base::TData

Definition at line 1298 of file Variation_ref_.hpp.

TDelta

typedef list< CRef< CDelta_item > > CVariation_inst_Base::TDelta

Definition at line 131 of file Variation_inst_.hpp.

TDescription [1/2]

typedef string CVariation_ref_Base::C_E_Somatic_origin::C_Condition::TDescription

Definition at line 1077 of file Variation_ref_.hpp.

TDescription [2/2]

typedef string CVariation_ref_Base::TDescription

Definition at line 1286 of file Variation_ref_.hpp.

TEffect

typedef int CVariantProperties_Base::TEffect

Definition at line 279 of file VariantProperties_.hpp.

TExt

typedef CUser_object CVariation_ref_Base::TExt

Definition at line 1303 of file Variation_ref_.hpp.

TExt_locs

typedef list< CRef< CExt_loc > > CVariation_ref_Base::TExt_locs

Definition at line 1302 of file Variation_ref_.hpp.

TFlags

typedef int CPopulation_data_Base::TFlags

Definition at line 107 of file Population_data_.hpp.

TFrameshift

typedef C_Frameshift CVariation_ref_Base::C_E_Consequence::TFrameshift

Definition at line 891 of file Variation_ref_.hpp.

TFrequency_based_validation

typedef int CVariantProperties_Base::TFrequency_based_validation

Definition at line 282 of file VariantProperties_.hpp.

TGene_location

typedef int CVariantProperties_Base::TGene_location

Definition at line 278 of file VariantProperties_.hpp.

TGenotype

typedef int CVariantProperties_Base::TGenotype

Definition at line 283 of file VariantProperties_.hpp.

TGenotype_frequency

typedef double CPopulation_data_Base::TGenotype_frequency

Definition at line 103 of file Population_data_.hpp.

TId [1/2]

typedef CObject_id CExt_loc_Base::TId

Definition at line 86 of file Ext_loc_.hpp.

TId [2/2]

typedef CDbtag CVariation_ref_Base::TId

Definition at line 1280 of file Variation_ref_.hpp.

TInstance

typedef CVariation_inst CVariation_ref_Base::C_Data::TInstance

Definition at line 426 of file Variation_ref_.hpp.

TIs_ancestral_allele [1/2]

typedef bool CVariantProperties_Base::TIs_ancestral_allele

Definition at line 291 of file VariantProperties_.hpp.

TIs_ancestral_allele [2/2]

typedef bool CVariation_ref_Base::TIs_ancestral_allele

Definition at line 1296 of file Variation_ref_.hpp.

TLiteral

typedef CSeq_literal CDelta_item_Base::C_Seq::TLiteral

Definition at line 164 of file Delta_item_.hpp.

TLoc

typedef CSeq_loc CDelta_item_Base::C_Seq::TLoc

Definition at line 165 of file Delta_item_.hpp.

TLocation [1/2]

typedef CSeq_loc CExt_loc_Base::TLocation

Definition at line 87 of file Ext_loc_.hpp.

TLocation [2/2]

typedef CSeq_loc CVariation_ref_Base::TLocation

Definition at line 1301 of file Variation_ref_.hpp.

TLoss_of_heterozygosity

typedef C_Loss_of_heterozygosity CVariation_ref_Base::C_E_Consequence::TLoss_of_heterozygosity

Definition at line 892 of file Variation_ref_.hpp.

TMap_weight

typedef int CVariantProperties_Base::TMap_weight

Definition at line 281 of file VariantProperties_.hpp.

TMapping

typedef int CVariantProperties_Base::TMapping

Definition at line 280 of file VariantProperties_.hpp.

TmemberIndex [1/12]

typedef Tparent::CMemberIndex<E_memberIndex, 5> CDelta_item_Base::TmemberIndex

Definition at line 273 of file Delta_item_.hpp.

TmemberIndex [2/12]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CExt_loc_Base::TmemberIndex

Definition at line 95 of file Ext_loc_.hpp.

TmemberIndex [3/12]

typedef Tparent::CMemberIndex<E_memberIndex, 5> CPhenotype_Base::TmemberIndex

Definition at line 119 of file Phenotype_.hpp.

TmemberIndex [4/12]

typedef Tparent::CMemberIndex<E_memberIndex, 7> CPopulation_data_Base::TmemberIndex

Definition at line 119 of file Population_data_.hpp.

TmemberIndex [5/12]

typedef Tparent::CMemberIndex<E_memberIndex, 17> CVariantProperties_Base::TmemberIndex

Definition at line 313 of file VariantProperties_.hpp.

TmemberIndex [6/12]

typedef Tparent::CMemberIndex<E_memberIndex, 4> CVariation_inst_Base::TmemberIndex

Definition at line 141 of file Variation_inst_.hpp.

TmemberIndex [7/12]

typedef Tparent::CMemberIndex<E_memberIndex, 4> CVariation_ref_Base::C_Data::C_Set::TmemberIndex

Definition at line 235 of file Variation_ref_.hpp.

TmemberIndex [8/12]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CVariation_ref_Base::C_E_Consequence::C_Frameshift::TmemberIndex

Definition at line 606 of file Variation_ref_.hpp.

TmemberIndex [9/12]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::TmemberIndex

Definition at line 726 of file Variation_ref_.hpp.

TmemberIndex [10/12]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CVariation_ref_Base::C_E_Somatic_origin::C_Condition::TmemberIndex

Definition at line 1086 of file Variation_ref_.hpp.

TmemberIndex [11/12]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CVariation_ref_Base::C_E_Somatic_origin::TmemberIndex

Definition at line 1185 of file Variation_ref_.hpp.

TmemberIndex [12/12]

typedef Tparent::CMemberIndex<E_memberIndex, 25> CVariation_ref_Base::TmemberIndex

Definition at line 1334 of file Variation_ref_.hpp.

TMethod

typedef list< int > CVariation_ref_Base::TMethod

Definition at line 1288 of file Variation_ref_.hpp.

TMultiplier

typedef int CDelta_item_Base::TMultiplier

Definition at line 261 of file Delta_item_.hpp.

TMultiplier_fuzz

typedef CInt_fuzz CDelta_item_Base::TMultiplier_fuzz

Definition at line 262 of file Delta_item_.hpp.

TName [1/2]

typedef string CVariation_ref_Base::C_Data::C_Set::TName

Definition at line 226 of file Variation_ref_.hpp.

TName [2/2]

typedef string CVariation_ref_Base::TName

Definition at line 1284 of file Variation_ref_.hpp.

TNote [1/2]

typedef string CVariation_ref_Base::C_Data::TNote

Definition at line 425 of file Variation_ref_.hpp.

TNote [2/2]

typedef string CVariation_ref_Base::C_E_Consequence::TNote

Definition at line 889 of file Variation_ref_.hpp.

TObject_id

typedef list< CRef< CDbtag > > CVariation_ref_Base::C_E_Somatic_origin::C_Condition::TObject_id

Definition at line 1078 of file Variation_ref_.hpp.

TObservation

typedef int CVariation_inst_Base::TObservation

Definition at line 132 of file Variation_inst_.hpp.

TOther_ids

typedef list< CRef< CDbtag > > CVariation_ref_Base::TOther_ids

Definition at line 1283 of file Variation_ref_.hpp.

TOther_validation

typedef bool CVariantProperties_Base::TOther_validation

Definition at line 287 of file VariantProperties_.hpp.

Tparent [1/19]

typedef CSerialObject CDelta_item_Base::Tparent

private

Definition at line 76 of file Delta_item_.hpp.

Tparent [2/19]

typedef CSerialObject CDelta_item_Base::C_Seq::Tparent

private

Definition at line 93 of file Delta_item_.hpp.

Tparent [3/19]

typedef CExt_loc_Base CExt_loc::Tparent

private

Definition at line 67 of file Ext_loc.hpp.

Tparent [4/19]

typedef CSerialObject CExt_loc_Base::Tparent

private

Definition at line 75 of file Ext_loc_.hpp.

Tparent [5/19]

typedef CPhenotype_Base CPhenotype::Tparent

private

Definition at line 67 of file Phenotype.hpp.

Tparent [6/19]

typedef CSerialObject CPhenotype_Base::Tparent

private

Definition at line 79 of file Phenotype_.hpp.

Tparent [7/19]

typedef CPopulation_data_Base CPopulation_data::Tparent

private

Definition at line 67 of file Population_data.hpp.

Tparent [8/19]

typedef CSerialObject CPopulation_data_Base::Tparent

private

Definition at line 79 of file Population_data_.hpp.

Tparent [9/19]

typedef CSerialObject CVariantProperties_Base::Tparent

private

Definition at line 116 of file VariantProperties_.hpp.

Tparent [10/19]

typedef CVariation_inst_Base CVariation_inst::Tparent

private

Definition at line 67 of file Variation_inst.hpp.

Tparent [11/19]

typedef CSerialObject CVariation_inst_Base::Tparent

private

Definition at line 79 of file Variation_inst_.hpp.

Tparent [12/19]

typedef CSerialObject CVariation_ref_Base::Tparent

private

Definition at line 90 of file Variation_ref_.hpp.

Tparent [13/19]

typedef CSerialObject CVariation_ref_Base::C_Data::Tparent

private

Definition at line 177 of file Variation_ref_.hpp.

Tparent [14/19]

typedef CSerialObject CVariation_ref_Base::C_Data::C_Set::Tparent

private

Definition at line 196 of file Variation_ref_.hpp.

Tparent [15/19]

typedef CSerialObject CVariation_ref_Base::C_E_Consequence::Tparent

private

Definition at line 568 of file Variation_ref_.hpp.

Tparent [16/19]

typedef CSerialObject CVariation_ref_Base::C_E_Consequence::C_Frameshift::Tparent

private

Definition at line 586 of file Variation_ref_.hpp.

Tparent [17/19]

typedef CSerialObject CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::Tparent

private

Definition at line 706 of file Variation_ref_.hpp.

Tparent [18/19]

typedef CSerialObject CVariation_ref_Base::C_E_Somatic_origin::Tparent

private

Definition at line 1048 of file Variation_ref_.hpp.

Tparent [19/19]

typedef CSerialObject CVariation_ref_Base::C_E_Somatic_origin::C_Condition::Tparent

private

Definition at line 1066 of file Variation_ref_.hpp.

TParent_id

typedef CDbtag CVariation_ref_Base::TParent_id

Definition at line 1281 of file Variation_ref_.hpp.

TPhase

typedef int CVariation_ref_Base::C_E_Consequence::C_Frameshift::TPhase

Definition at line 597 of file Variation_ref_.hpp.

TPhenotype

typedef list< CRef< CPhenotype > > CVariation_ref_Base::TPhenotype

Definition at line 1287 of file Variation_ref_.hpp.

TPopulation

typedef string CPopulation_data_Base::TPopulation

Definition at line 102 of file Population_data_.hpp.

TPopulation_data

typedef list< CRef< CPopulation_data > > CVariation_ref_Base::TPopulation_data

Definition at line 1289 of file Variation_ref_.hpp.

TProject_data

typedef list< int > CVariantProperties_Base::TProject_data

Definition at line 284 of file VariantProperties_.hpp.

TPub

typedef CPub CVariation_ref_Base::TPub

Definition at line 1297 of file Variation_ref_.hpp.

TQuality_check

typedef int CVariantProperties_Base::TQuality_check

Definition at line 285 of file VariantProperties_.hpp.

TReference

typedef string CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::TReference

Definition at line 717 of file Variation_ref_.hpp.

TResource_link

typedef int CVariantProperties_Base::TResource_link

Definition at line 277 of file VariantProperties_.hpp.

TSample_id

typedef CObject_id CVariation_ref_Base::TSample_id

Definition at line 1282 of file Variation_ref_.hpp.

TSample_ids

typedef list< CRef< CObject_id > > CPopulation_data_Base::TSample_ids

Definition at line 105 of file Population_data_.hpp.

TSeq

typedef C_Seq CDelta_item_Base::TSeq

Definition at line 260 of file Delta_item_.hpp.

TSet

typedef C_Set CVariation_ref_Base::C_Data::TSet

Definition at line 427 of file Variation_ref_.hpp.

TSomatic_origin

typedef list< CRef< C_E_Somatic_origin > > CVariation_ref_Base::TSomatic_origin

Definition at line 1304 of file Variation_ref_.hpp.

TSource [1/2]

typedef string CPhenotype_Base::TSource

Definition at line 106 of file Phenotype_.hpp.

TSource [2/2]

typedef CSubSource CVariation_ref_Base::C_E_Somatic_origin::TSource

Definition at line 1176 of file Variation_ref_.hpp.

TSynonyms

typedef list< string > CVariation_ref_Base::TSynonyms

Definition at line 1285 of file Variation_ref_.hpp.

TTerm

typedef string CPhenotype_Base::TTerm

Definition at line 107 of file Phenotype_.hpp.

TTest

typedef string CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::TTest

Definition at line 718 of file Variation_ref_.hpp.

TType [1/2]

typedef int CVariation_inst_Base::TType

Definition at line 130 of file Variation_inst_.hpp.

TType [2/2]

typedef int CVariation_ref_Base::C_Data::C_Set::TType

Definition at line 224 of file Variation_ref_.hpp.

TValidated

typedef bool CVariation_ref_Base::TValidated

Definition at line 1291 of file Variation_ref_.hpp.

TVariant_prop

typedef CVariantProperties CVariation_ref_Base::TVariant_prop

Definition at line 1290 of file Variation_ref_.hpp.

TVariation

typedef CVariation_ref CVariation_ref_Base::C_E_Consequence::TVariation

Definition at line 890 of file Variation_ref_.hpp.

TVariations

typedef list< CRef< CVariation_ref > > CVariation_ref_Base::C_Data::C_Set::TVariations

Definition at line 225 of file Variation_ref_.hpp.

TVersion

typedef int CVariantProperties_Base::TVersion

Definition at line 276 of file VariantProperties_.hpp.

TX_length

typedef int CVariation_ref_Base::C_E_Consequence::C_Frameshift::TX_length

Definition at line 598 of file Variation_ref_.hpp.

TXref

typedef list< CRef< CDbtag > > CPhenotype_Base::TXref

Definition at line 108 of file Phenotype_.hpp.

Enumeration Type Documentation

E_Choice [1/3]

enum CDelta_item_Base::C_Seq::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Literal
e_Loc
e_This	same location as variation-ref itself

Definition at line 105 of file Delta_item_.hpp.

E_Choice [2/3]

enum CVariation_ref_Base::C_Data::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Unknown
e_Note	free-form
e_Uniparental_disomy
e_Instance	actual sequence-edit at feat.location
e_Set
e_Complex	variant is a complex and undescribed change at the location This type of variant is known to occur in dbVar submissions

Definition at line 363 of file Variation_ref_.hpp.

E_Choice [3/3]

enum CVariation_ref_Base::C_E_Consequence::E_Choice

Choice variants.

Enumerator
e_not_set	No variant selected.
e_Unknown
e_Splicing	some effect on splicing
e_Note	freeform
e_Variation	Describe resulting variation in the product, e.g. missense, nonsense, silent, neutral, etc in a protein, that arises from THIS variation.
e_Frameshift
e_Loss_of_heterozygosity

Definition at line 827 of file Variation_ref_.hpp.

E_ChoiceStopper [1/3]

enum CDelta_item_Base::C_Seq::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_This+1

Definition at line 112 of file Delta_item_.hpp.

E_ChoiceStopper [2/3]

enum CVariation_ref_Base::C_Data::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Complex+1

Definition at line 373 of file Variation_ref_.hpp.

E_ChoiceStopper [3/3]

enum CVariation_ref_Base::C_E_Consequence::E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Enumerator
e_MaxChoice	== e_Loss_of_heterozygosity+1

Definition at line 837 of file Variation_ref_.hpp.

E_memberIndex [1/12]

enum CDelta_item_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_seq
e_multiplier
e_multiplier_fuzz
e_action

Definition at line 266 of file Delta_item_.hpp.

E_memberIndex [2/12]

enum CExt_loc_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_id
e_location

Definition at line 90 of file Ext_loc_.hpp.

E_memberIndex [3/12]

enum CPhenotype_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_source
e_term
e_xref
e_clinical_significance

Definition at line 112 of file Phenotype_.hpp.

E_memberIndex [4/12]

enum CPopulation_data_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_population
e_genotype_frequency
e_chromosomes_tested
e_sample_ids
e_allele_frequency
e_flags

Definition at line 110 of file Population_data_.hpp.

E_memberIndex [5/12]

enum CVariantProperties_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_version
e_resource_link
e_gene_location
e_effect
e_mapping
e_map_weight
e_frequency_based_validation
e_genotype
e_project_data
e_quality_check
e_confidence
e_other_validation
e_allele_origin
e_allele_state
e_allele_frequency
e_is_ancestral_allele

Definition at line 294 of file VariantProperties_.hpp.

E_memberIndex [6/12]

enum CVariation_inst_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_type
e_delta
e_observation

Definition at line 135 of file Variation_inst_.hpp.

E_memberIndex [7/12]

enum CVariation_ref_Base::C_Data::C_Set::E_memberIndex

strong

Enumerator
e__allMandatory
e_type
e_variations
e_name

Definition at line 229 of file Variation_ref_.hpp.

E_memberIndex [8/12]

enum CVariation_ref_Base::C_E_Consequence::C_Frameshift::E_memberIndex

strong

Enumerator
e__allMandatory
e_phase
e_x_length

Definition at line 601 of file Variation_ref_.hpp.

E_memberIndex [9/12]

enum CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::E_memberIndex

strong

Enumerator
e__allMandatory
e_reference
e_test

Definition at line 721 of file Variation_ref_.hpp.

E_memberIndex [10/12]

enum CVariation_ref_Base::C_E_Somatic_origin::C_Condition::E_memberIndex

strong

Enumerator
e__allMandatory
e_description
e_object_id

Definition at line 1081 of file Variation_ref_.hpp.

E_memberIndex [11/12]

enum CVariation_ref_Base::C_E_Somatic_origin::E_memberIndex

strong

Enumerator
e__allMandatory
e_source
e_condition

Definition at line 1180 of file Variation_ref_.hpp.

E_memberIndex [12/12]

enum CVariation_ref_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_id
e_parent_id
e_sample_id
e_other_ids
e_name
e_synonyms
e_description
e_phenotype
e_method
e_population_data
e_variant_prop
e_validated
e_clinical_test
e_allele_origin
e_allele_state
e_allele_frequency
e_is_ancestral_allele
e_pub
e_data
e_consequence
e_location
e_ext_locs
e_ext
e_somatic_origin

Definition at line 1307 of file Variation_ref_.hpp.

EAction

enum CDelta_item_Base::EAction

Enumerator
eAction_morph	replace len(seq) positions starting with location.start with seq
eAction_offset	go downstream by distance specified by multiplier (upstream if < 0), in genomic context.
eAction_del_at	excise sequence at location if multiplier is specified, delete len(location)*multiplier positions downstream
eAction_ins_before	insert seq before the location.start

Definition at line 249 of file Delta_item_.hpp.

EAllele_origin [1/2]

enum CVariantProperties_Base::EAllele_origin

origin of this allele, if known note that these are powers-of-two, and represent bits; thus, we can represent more than one state simultaneously through a bitwise OR

Enumerator
eAllele_origin_unknown
eAllele_origin_germline
eAllele_origin_somatic
eAllele_origin_inherited
eAllele_origin_paternal
eAllele_origin_maternal
eAllele_origin_de_novo
eAllele_origin_biparental
eAllele_origin_uniparental
eAllele_origin_not_tested
eAllele_origin_tested_inconclusive
eAllele_origin_not_reported
eAllele_origin_other	stopper - 2^31

Definition at line 242 of file VariantProperties_.hpp.

EAllele_origin [2/2]

enum CVariation_ref_Base::EAllele_origin

origin of this allele, if known note that these are powers-of-two, and represent bits; thus, we can represent more than one state simultaneously through a bitwise OR DEPRECATED: new field = VariantProperties.allele-origin

Enumerator
eAllele_origin_unknown
eAllele_origin_germline
eAllele_origin_somatic
eAllele_origin_inherited
eAllele_origin_paternal
eAllele_origin_maternal
eAllele_origin_de_novo
eAllele_origin_biparental
eAllele_origin_uniparental
eAllele_origin_not_tested
eAllele_origin_tested_inconclusive
eAllele_origin_other	stopper - 2^31

Definition at line 138 of file Variation_ref_.hpp.

EAllele_state [1/2]

enum CVariantProperties_Base::EAllele_state

observed allele state, if known NOTE: THIS IS NOT A BITFIELD!

Enumerator
eAllele_state_unknown
eAllele_state_homozygous
eAllele_state_heterozygous
eAllele_state_hemizygous
eAllele_state_nullizygous
eAllele_state_other

Definition at line 263 of file VariantProperties_.hpp.

EAllele_state [2/2]

enum CVariation_ref_Base::EAllele_state

observed allele state, if known DEPRECATED: new field = VariantProperties.allele-state

Enumerator
eAllele_state_unknown
eAllele_state_homozygous
eAllele_state_heterozygous
eAllele_state_hemizygous
eAllele_state_nullizygous
eAllele_state_other

Definition at line 158 of file Variation_ref_.hpp.

EClinical_significance

enum CPhenotype_Base::EClinical_significance

does this variant have known clinical significance?

Enumerator
eClinical_significance_unknown
eClinical_significance_untested
eClinical_significance_non_pathogenic
eClinical_significance_probable_non_pathogenic
eClinical_significance_probable_pathogenic
eClinical_significance_pathogenic
eClinical_significance_drug_response
eClinical_significance_histocompatibility
eClinical_significance_other

Definition at line 90 of file Phenotype_.hpp.

EConfidence

enum CVariantProperties_Base::EConfidence

Enumerator
eConfidence_unknown
eConfidence_likely_artifact
eConfidence_other

Definition at line 230 of file VariantProperties_.hpp.

EData_set_type

enum CVariation_ref_Base::C_Data::C_Set::EData_set_type

Enumerator
eData_set_type_unknown
eData_set_type_compound	complex change at the same location on the same molecule
eData_set_type_products	different products arising from the same variation in a precursor, e.g. r.[13g>a, 13_88del]
eData_set_type_haplotype	changes on the same allele, e.g r.[13g>a;15u>c]
eData_set_type_genotype	changes on different alleles in the same genotype, e.g. g.[476C>T]+[476C>T]
eData_set_type_mosaic	different genotypes in the same individual
eData_set_type_individual	same organism; allele relationship unknown, e.g. g.[476C>T(+)183G>C]
eData_set_type_population	population
eData_set_type_alleles	set represents a set of observed alleles
eData_set_type_package	set represents a package of observations at a given location, generally containing asserted + reference
eData_set_type_other

Definition at line 206 of file Variation_ref_.hpp.

EEffect

enum CVariantProperties_Base::EEffect

Enumerator
eEffect_no_change	known to cause no functional changes since 0 does not combine with any other bit value, 'no-change' specifically implies that there are no consequences
eEffect_synonymous	one allele in the set does not change the encoded amino acid (0x1)
eEffect_nonsense	one allele in the set changes to STOP codon (TER). (0x2)
eEffect_missense	one allele in the set changes protein peptide (0x4)
eEffect_frameshift	one allele in the set changes all downstream amino acids (0x8)
eEffect_up_regulator	the variant causes increased transcription (0x10)
eEffect_down_regulator	the variant causes decreased transcription (0x20)
eEffect_methylation
eEffect_stop_gain	reference codon is not stop codon, but the snp variant allele changes the codon to a terminating codon.
eEffect_stop_loss	reverse of STOP-GAIN: reference codon is a stop codon, but a snp variant allele changes the codon to a non-terminating codon.

Definition at line 162 of file VariantProperties_.hpp.

EFlags

enum CPopulation_data_Base::EFlags

This field is an explicit bit-field Valid values should be a bitwise combination (= simple sum) of any of the values below.

Enumerator
eFlags_is_default_population
eFlags_is_minor_allele
eFlags_is_rare_allele

Definition at line 92 of file Population_data_.hpp.

EFrequency_based_validation

enum CVariantProperties_Base::EFrequency_based_validation

Enumerator
eFrequency_based_validation_is_mutation	low frequency variation that is cited in journal or other reputable sources (0x01)
eFrequency_based_validation_above_5pct_all	>5% minor allele freq in each and all populations (0x02)
eFrequency_based_validation_above_5pct_1plus	>5% minor allele freq in 1+ populations (0x04)
eFrequency_based_validation_validated	Bit is set if the variant has a minor allele observed in two or more separate chromosomes.
eFrequency_based_validation_above_1pct_all	>1% minor allele freq in each and all populations (0x10)
eFrequency_based_validation_above_1pct_1plus	>1% minor allele freq in 1+ populations (0x20)

Definition at line 199 of file VariantProperties_.hpp.

EGene_location

enum CVariantProperties_Base::EGene_location

Enumerator
eGene_location_in_gene	Sequence intervals covered by a gene ID but not having an aligned transcript (0x01)
eGene_location_near_gene_5	Within 2kb of the 5' end of a gene feature.
eGene_location_near_gene_3	Within 0.5kb of the 3' end of a gene feature.
eGene_location_intron	In Intron (0x08)
eGene_location_donor	In donor splice-site (0x10)
eGene_location_acceptor	In acceptor splice-site (0x20)
eGene_location_utr_5	In 5' UTR (0x40)
eGene_location_utr_3	In 3' UTR (0x80)
eGene_location_in_start_codon	the variant is observed in a start codon (0x100)
eGene_location_in_stop_codon	the variant is observed in a stop codon (0x200)
eGene_location_intergenic	variant located between genes (0x400)
eGene_location_conserved_noncoding	variant is located in a conserved non-coding region (0x800)

Definition at line 144 of file VariantProperties_.hpp.

EGenotype

enum CVariantProperties_Base::EGenotype

Enumerator
eGenotype_in_haplotype_set	Exists in a haplotype tagging set (0x01)
eGenotype_has_genotypes	SNP has individual genotype (0x02)

Definition at line 211 of file VariantProperties_.hpp.

EMap_weight

enum CVariantProperties_Base::EMap_weight

map-weight captures specificity of placement NOTE: This is *NOT* a bitfield

Enumerator
eMap_weight_is_uniquely_placed
eMap_weight_placed_twice_on_same_chrom
eMap_weight_placed_twice_on_diff_chrom
eMap_weight_many_placements

Definition at line 189 of file VariantProperties_.hpp.

EMapping

enum CVariantProperties_Base::EMapping

Enumerator
eMapping_has_other_snp	Another SNP has the same mapped positions on reference assembly (0x01)
eMapping_has_assembly_conflict	Weight 1 or 2 SNPs that map to different chromosomes on different assemblies (0x02)
eMapping_is_assembly_specific	Only maps to 1 assembly (0x04)

Definition at line 178 of file VariantProperties_.hpp.

EMethod_E

enum CVariation_ref_Base::EMethod_E

Enumerator
eMethod_E_unknown
eMethod_E_bac_acgh
eMethod_E_computational
eMethod_E_curated
eMethod_E_digital_array
eMethod_E_expression_array
eMethod_E_fish
eMethod_E_flanking_sequence
eMethod_E_maph
eMethod_E_mcd_analysis
eMethod_E_mlpa
eMethod_E_oea_assembly
eMethod_E_oligo_acgh
eMethod_E_paired_end
eMethod_E_pcr
eMethod_E_qpcr
eMethod_E_read_depth
eMethod_E_roma
eMethod_E_rt_pcr
eMethod_E_sage
eMethod_E_sequence_alignment
eMethod_E_sequencing
eMethod_E_snp_array
eMethod_E_snp_genoytyping
eMethod_E_southern
eMethod_E_western
eMethod_E_optical_mapping
eMethod_E_other

Definition at line 100 of file Variation_ref_.hpp.

EObservation

enum CVariation_inst_Base::EObservation

'observation' is used to label items in a Variation-ref package This field is explicitly a bit-field, so the bitwise OR (= sum) of any of the values may be observed.

Enumerator
eObservation_asserted	inst represents the asserted base at a position
eObservation_reference	inst represents the reference base at the position
eObservation_variant	inst represent the observed variant at a given position

Definition at line 120 of file Variation_inst_.hpp.

EQuality_check

enum CVariantProperties_Base::EQuality_check

Enumerator
eQuality_check_contig_allele_missing	Reference sequence allele at the mapped position is not present in the SNP allele list, adjusted for orientation (0x01)
eQuality_check_withdrawn_by_submitter	One member SS is withdrawn by submitter (0x02)
eQuality_check_non_overlapping_alleles	RS set has 2+ alleles from different submissions and these sets share no alleles in common (0x04)
eQuality_check_strain_specific	Straing specific fixed difference (0x08)
eQuality_check_genotype_conflict	Has Genotype Conflict (0x10)

Definition at line 219 of file VariantProperties_.hpp.

EResource_link

enum CVariantProperties_Base::EResource_link

NOTE: The format for most of these values is as an integer Unless otherwise noted, these integers represent a bitwise OR (= simple sum) of the possible values, and as such, these values represent the specific bit flags that may be set for each of the possible attributes here.

Enumerator
eResource_link_preserved	Clinical, Pubmed, Cited, (0x01)
eResource_link_provisional	Provisional Third Party Annotations (0x02)
eResource_link_has3D	Has 3D strcture SNP3D table (0x04)
eResource_link_submitterLinkout	SNP->SubSNP->Batch link_out (0x08)
eResource_link_clinical	Clinical if LSDB, OMIM, TPA, Diagnostic (0x10)
eResource_link_genotypeKit	Marker exists on high density genotyping kit (0x20)

Definition at line 132 of file VariantProperties_.hpp.

EType

enum CVariation_inst_Base::EType

(

void

)

Enumerator
eType_unknown	delta=[]
eType_identity	delta=[]
eType_inv	delta=[del, ins.seq= RevComp(variation-location)]
eType_snv	delta=[morph of length 1] NOTE: this is snV not snP; the latter requires frequency-based validation to be established in VariantProperties the strict definition of SNP is an SNV with an established population frequency of at least 1% in at least 1 popuplation
eType_mnp	delta=[morph of length >1]
eType_delins	delta=[del, ins]
eType_del	delta=[del]
eType_ins	delta=[ins]
eType_microsatellite	delta=[del, ins.seq= repeat-unit with fuzzy multiplier] variation-location is the microsat expansion on the sequence
eType_transposon	delta=[del, ins.seq= known donor or 'this'] variation-location is equiv of transposon locs.
eType_cnv	delta=[del, ins= 'this' with fuzzy multiplier]
eType_direct_copy	delta=[ins.seq= upstream location on the same strand]
eType_rev_direct_copy	delta=[ins.seq= downstream location on the same strand]
eType_inverted_copy	delta=[ins.seq= upstream location on the opposite strand]
eType_everted_copy	delta=[ins.seq= downstream location on the opposite strand]
eType_translocation	delta=like delins
eType_prot_missense	delta=[morph of length 1]
eType_prot_nonsense	delta=[del]; variation-location is the tail of the protein being truncated
eType_prot_neutral	delta=[morph of length 1]
eType_prot_silent	delta=[morph of length 1, same AA as at variation-location]
eType_prot_other	delta=any
eType_other	delta=any

Definition at line 89 of file Variation_inst_.hpp.

Function Documentation

C_Condition() [1/2]

CVariation_ref_Base::C_E_Somatic_origin::C_Condition::C_Condition ( const C_Condition &  )

private

C_Condition() [2/2]

END_CLASS_INFO CVariation_ref_Base::C_E_Somatic_origin::C_Condition::C_Condition

(

void

)

Definition at line 603 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_set_State.

C_Data() [1/2]

CVariation_ref_Base::C_Data::C_Data ( const C_Data &  )

private

C_Data() [2/2]

END_CHOICE_INFO CVariation_ref_Base::C_Data::C_Data

(

void

)

Definition at line 320 of file Variation_ref_.cpp.

C_E_Consequence() [1/2]

CVariation_ref_Base::C_E_Consequence::C_E_Consequence ( const C_E_Consequence &  )

private

C_E_Consequence() [2/2]

END_CHOICE_INFO CVariation_ref_Base::C_E_Consequence::C_E_Consequence

(

void

)

Definition at line 560 of file Variation_ref_.cpp.

C_E_Somatic_origin() [1/2]

CVariation_ref_Base::C_E_Somatic_origin::C_E_Somatic_origin ( const C_E_Somatic_origin &  )

private

C_E_Somatic_origin() [2/2]

END_CLASS_INFO CVariation_ref_Base::C_E_Somatic_origin::C_E_Somatic_origin

(

void

)

Definition at line 667 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_set_State.

C_Frameshift() [1/2]

CVariation_ref_Base::C_E_Consequence::C_Frameshift::C_Frameshift ( const C_Frameshift &  )

private

C_Frameshift() [2/2]

END_CLASS_INFO CVariation_ref_Base::C_E_Consequence::C_Frameshift::C_Frameshift

(

void

)

Definition at line 351 of file Variation_ref_.cpp.

References CVariation_ref_Base::C_E_Consequence::C_Frameshift::m_set_State.

C_Loss_of_heterozygosity() [1/2]

CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::C_Loss_of_heterozygosity ( const C_Loss_of_heterozygosity &  )

private

C_Loss_of_heterozygosity() [2/2]

END_CLASS_INFO CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::C_Loss_of_heterozygosity

(

void

)

Definition at line 394 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_set_State.

C_Seq() [1/2]

CDelta_item_Base::C_Seq::C_Seq ( const C_Seq &  )

private

C_Seq() [2/2]

END_CHOICE_INFO CDelta_item_Base::C_Seq::C_Seq

(

void

)

Definition at line 164 of file Delta_item_.cpp.

C_Set() [1/2]

CVariation_ref_Base::C_Data::C_Set::C_Set ( const C_Set &  )

private

C_Set() [2/2]

END_CLASS_INFO CVariation_ref_Base::C_Data::C_Set::C_Set

(

void

)

Definition at line 179 of file Variation_ref_.cpp.

References CVariation_ref_Base::C_Data::C_Set::m_set_State.

CanGetAction()

bool CDelta_item_Base::CanGetAction ( void  ) const

inline

Check if it is safe to call GetAction method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 608 of file Delta_item_.hpp.

CanGetAllele_frequency() [1/3]

bool CPopulation_data_Base::CanGetAllele_frequency ( void  ) const

inline

Check if it is safe to call GetAllele_frequency method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 543 of file Population_data_.hpp.

References CPopulation_data_Base::IsSetAllele_frequency().

Referenced by CPopulation_data_Base::GetAllele_frequency().

CanGetAllele_frequency() [2/3]

bool CVariantProperties_Base::CanGetAllele_frequency ( void  ) const

inline

Check if it is safe to call GetAllele_frequency method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1606 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetAllele_frequency().

Referenced by CVariation_ref::CanGetAllele_frequency(), and CVariantProperties_Base::GetAllele_frequency().

CanGetAllele_frequency() [3/3]

bool CVariation_ref_Base::CanGetAllele_frequency ( void  ) const

inline

Check if it is safe to call GetAllele_frequency method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3347 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetAllele_frequency().

Referenced by CVariation_ref::CanGetAllele_frequency(), and CVariation_ref_Base::GetAllele_frequency().

CanGetAllele_origin() [1/2]

bool CVariantProperties_Base::CanGetAllele_origin ( void  ) const

inline

Check if it is safe to call GetAllele_origin method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1512 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetAllele_origin().

Referenced by CVariation_ref::CanGetAllele_origin(), and CVariantProperties_Base::GetAllele_origin().

CanGetAllele_origin() [2/2]

bool CVariation_ref_Base::CanGetAllele_origin ( void  ) const

inline

Check if it is safe to call GetAllele_origin method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3253 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetAllele_origin().

Referenced by CVariation_ref::CanGetAllele_origin(), and CVariation_ref_Base::GetAllele_origin().

CanGetAllele_state() [1/2]

bool CVariantProperties_Base::CanGetAllele_state ( void  ) const

inline

Check if it is safe to call GetAllele_state method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1559 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetAllele_state().

Referenced by CVariation_ref::CanGetAllele_state(), and CVariantProperties_Base::GetAllele_state().

CanGetAllele_state() [2/2]

bool CVariation_ref_Base::CanGetAllele_state ( void  ) const

inline

Check if it is safe to call GetAllele_state method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3300 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetAllele_state().

Referenced by CVariation_ref::CanGetAllele_state(), and CVariation_ref_Base::GetAllele_state().

CanGetChromosomes_tested()

bool CPopulation_data_Base::CanGetChromosomes_tested ( void  ) const

inline

Check if it is safe to call GetChromosomes_tested method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 471 of file Population_data_.hpp.

References CPopulation_data_Base::IsSetChromosomes_tested().

Referenced by CPopulation_data_Base::GetChromosomes_tested().

CanGetClinical_significance()

bool CPhenotype_Base::CanGetClinical_significance ( void  ) const

inline

Check if it is safe to call GetClinical_significance method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 420 of file Phenotype_.hpp.

References CPhenotype_Base::IsSetClinical_significance().

Referenced by CPhenotype_Base::GetClinical_significance().

CanGetClinical_test()

bool CVariation_ref_Base::CanGetClinical_test ( void  ) const

inline

Check if it is safe to call GetClinical_test method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3228 of file Variation_ref_.hpp.

CanGetCondition()

bool CVariation_ref_Base::C_E_Somatic_origin::CanGetCondition ( void  ) const

inline

Check if it is safe to call GetCondition method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2857 of file Variation_ref_.hpp.

CanGetConfidence()

bool CVariantProperties_Base::CanGetConfidence ( void  ) const

inline

Check if it is safe to call GetConfidence method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1418 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetConfidence().

Referenced by CVariantProperties_Base::GetConfidence().

CanGetConsequence()

bool CVariation_ref_Base::CanGetConsequence ( void  ) const

inline

Check if it is safe to call GetConsequence method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3492 of file Variation_ref_.hpp.

Referenced by s_IsLOH().

CanGetData()

bool CVariation_ref_Base::CanGetData ( void  ) const

inline

Check if it is safe to call GetData method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3462 of file Variation_ref_.hpp.

CanGetDelta()

bool CVariation_inst_Base::CanGetDelta ( void  ) const

inline

Check if it is safe to call GetDelta method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 331 of file Variation_inst_.hpp.

Referenced by CGuiObjectInfoVariant::GetToolTip(), and NSnpGui::GetVcfType().

CanGetDescription() [1/2]

bool CVariation_ref_Base::C_E_Somatic_origin::C_Condition::CanGetDescription ( void  ) const

inline

Check if it is safe to call GetDescription method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2764 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetDescription().

CanGetDescription() [2/2]

bool CVariation_ref_Base::CanGetDescription ( void  ) const

inline

Check if it is safe to call GetDescription method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3038 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetDescription().

Referenced by CVariation_ref_Base::C_E_Somatic_origin::C_Condition::GetDescription(), and CVariation_ref_Base::GetDescription().

CanGetEffect()

bool CVariantProperties_Base::CanGetEffect ( void  ) const

inline

Check if it is safe to call GetEffect method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1111 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetEffect().

Referenced by CVariantProperties_Base::GetEffect(), and NSNPVariationHelper::VariantPropAsStrings().

CanGetExt()

bool CVariation_ref_Base::CanGetExt ( void  ) const

inline

Check if it is safe to call GetExt method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3563 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetExt().

Referenced by CVariation_ref::CanGetExt(), and CVariation_ref_Base::GetExt().

CanGetExt_locs()

bool CVariation_ref_Base::CanGetExt_locs ( void  ) const

inline

Check if it is safe to call GetExt_locs method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3538 of file Variation_ref_.hpp.

Referenced by CVariation_ref::CanGetExt_locs().

CanGetFlags()

bool CPopulation_data_Base::CanGetFlags ( void  ) const

inline

Check if it is safe to call GetFlags method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 590 of file Population_data_.hpp.

References CPopulation_data_Base::IsSetFlags().

Referenced by CPopulation_data_Base::GetFlags().

CanGetFrequency_based_validation()

bool CVariantProperties_Base::CanGetFrequency_based_validation ( void  ) const

inline

Check if it is safe to call GetFrequency_based_validation method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1252 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetFrequency_based_validation().

Referenced by CVariantProperties_Base::GetFrequency_based_validation(), and NSNPVariationHelper::VariantPropAsStrings().

CanGetGene_location()

bool CVariantProperties_Base::CanGetGene_location ( void  ) const

inline

Check if it is safe to call GetGene_location method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1064 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetGene_location().

Referenced by CVariantProperties_Base::GetGene_location(), and NSNPVariationHelper::VariantPropAsStrings().

CanGetGenotype()

bool CVariantProperties_Base::CanGetGenotype ( void  ) const

inline

Check if it is safe to call GetGenotype method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1299 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetGenotype().

Referenced by CVariantProperties_Base::GetGenotype().

CanGetGenotype_frequency()

bool CPopulation_data_Base::CanGetGenotype_frequency ( void  ) const

inline

Check if it is safe to call GetGenotype_frequency method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 424 of file Population_data_.hpp.

References CPopulation_data_Base::IsSetGenotype_frequency().

Referenced by CPopulation_data_Base::GetGenotype_frequency().

CanGetId() [1/2]

bool CExt_loc_Base::CanGetId ( void  ) const

inline

Check if it is safe to call GetId method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 205 of file Ext_loc_.hpp.

CanGetId() [2/2]

bool CVariation_ref_Base::CanGetId ( void  ) const

inline

Check if it is safe to call GetId method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2878 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetId().

Referenced by CVariation_ref_Base::GetId(), CSeq_featHandler::GetLabel(), CGuiObjectInfoVariant::GetLinks(), CFeatGlyph::IsDbVar(), and NSearchFeatPanel::s_GetFeatureLabel().

CanGetIs_ancestral_allele() [1/2]

bool CVariantProperties_Base::CanGetIs_ancestral_allele ( void  ) const

inline

Check if it is safe to call GetIs_ancestral_allele method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1653 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetIs_ancestral_allele().

Referenced by CVariation_ref::CanGetIs_ancestral_allele(), and CVariantProperties_Base::GetIs_ancestral_allele().

CanGetIs_ancestral_allele() [2/2]

bool CVariation_ref_Base::CanGetIs_ancestral_allele ( void  ) const

inline

Check if it is safe to call GetIs_ancestral_allele method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3394 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetIs_ancestral_allele().

Referenced by CVariation_ref::CanGetIs_ancestral_allele(), and CVariation_ref_Base::GetIs_ancestral_allele().

CanGetLocation() [1/2]

bool CExt_loc_Base::CanGetLocation ( void  ) const

inline

Check if it is safe to call GetLocation method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 235 of file Ext_loc_.hpp.

CanGetLocation() [2/2]

bool CVariation_ref_Base::CanGetLocation ( void  ) const

inline

Check if it is safe to call GetLocation method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3517 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetLocation().

Referenced by CVariation_ref::CanGetLocation(), and CVariation_ref_Base::GetLocation().

CanGetMap_weight()

bool CVariantProperties_Base::CanGetMap_weight ( void  ) const

inline

Check if it is safe to call GetMap_weight method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1205 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetMap_weight().

Referenced by CVariantProperties_Base::GetMap_weight().

CanGetMapping()

bool CVariantProperties_Base::CanGetMapping ( void  ) const

inline

Check if it is safe to call GetMapping method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1158 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetMapping().

Referenced by CVariantProperties_Base::GetMapping(), and NSNPVariationHelper::VariantPropAsStrings().

CanGetMethod()

bool CVariation_ref_Base::CanGetMethod ( void  ) const

inline

Check if it is safe to call GetMethod method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3110 of file Variation_ref_.hpp.

Referenced by CSeq_featHandler::GetLabel().

CanGetMultiplier()

bool CDelta_item_Base::CanGetMultiplier ( void  ) const

inline

Check if it is safe to call GetMultiplier method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 540 of file Delta_item_.hpp.

References CDelta_item_Base::IsSetMultiplier().

Referenced by CDelta_item_Base::GetMultiplier().

CanGetMultiplier_fuzz()

bool CDelta_item_Base::CanGetMultiplier_fuzz ( void  ) const

inline

Check if it is safe to call GetMultiplier_fuzz method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 587 of file Delta_item_.hpp.

References CDelta_item_Base::IsSetMultiplier_fuzz().

Referenced by CDelta_item_Base::GetMultiplier_fuzz().

CanGetName() [1/2]

bool CVariation_ref_Base::C_Data::C_Set::CanGetName ( void  ) const

inline

Check if it is safe to call GetName method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2341 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetName().

CanGetName() [2/2]

bool CVariation_ref_Base::CanGetName ( void  ) const

inline

Check if it is safe to call GetName method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2966 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetName().

Referenced by CVariation_ref_Base::C_Data::C_Set::GetName(), and CVariation_ref_Base::GetName().

CanGetObject_id()

bool CVariation_ref_Base::C_E_Somatic_origin::C_Condition::CanGetObject_id ( void  ) const

inline

Check if it is safe to call GetObject_id method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2811 of file Variation_ref_.hpp.

CanGetObservation()

bool CVariation_inst_Base::CanGetObservation ( void  ) const

inline

Check if it is safe to call GetObservation method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 356 of file Variation_inst_.hpp.

References CVariation_inst_Base::IsSetObservation().

Referenced by CVariation_inst_Base::GetObservation(), CGuiObjectInfoVariant::GetToolTip(), and NSnpGui::GetVcfType().

CanGetOther_ids()

bool CVariation_ref_Base::CanGetOther_ids ( void  ) const

inline

Check if it is safe to call GetOther_ids method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2941 of file Variation_ref_.hpp.

CanGetOther_validation()

bool CVariantProperties_Base::CanGetOther_validation ( void  ) const

inline

Check if it is safe to call GetOther_validation method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1465 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetOther_validation().

Referenced by CVariation_ref::CanGetValidated(), and CVariantProperties_Base::GetOther_validation().

CanGetParent_id()

bool CVariation_ref_Base::CanGetParent_id ( void  ) const

inline

Check if it is safe to call GetParent_id method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2899 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetParent_id().

Referenced by CSeq_featHandler::GetLabel(), CGuiObjectInfoVariant::GetLinks(), CVariation_ref_Base::GetParent_id(), and CGuiObjectInfoVariant::GetToolTip().

CanGetPhase()

bool CVariation_ref_Base::C_E_Consequence::C_Frameshift::CanGetPhase ( void  ) const

inline

Check if it is safe to call GetPhase method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2485 of file Variation_ref_.hpp.

CanGetPhenotype()

bool CVariation_ref_Base::CanGetPhenotype ( void  ) const

inline

Check if it is safe to call GetPhenotype method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3085 of file Variation_ref_.hpp.

Referenced by CSeq_featHandler::GetLabel(), and CGuiObjectInfoVariant::GetToolTip().

CanGetPopulation()

bool CPopulation_data_Base::CanGetPopulation ( void  ) const

inline

Check if it is safe to call GetPopulation method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 377 of file Population_data_.hpp.

References CPopulation_data_Base::IsSetPopulation().

Referenced by CPopulation_data_Base::GetPopulation().

CanGetPopulation_data()

bool CVariation_ref_Base::CanGetPopulation_data ( void  ) const

inline

Check if it is safe to call GetPopulation_data method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3135 of file Variation_ref_.hpp.

CanGetProject_data()

bool CVariantProperties_Base::CanGetProject_data ( void  ) const

inline

Check if it is safe to call GetProject_data method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1346 of file VariantProperties_.hpp.

CanGetPub()

bool CVariation_ref_Base::CanGetPub ( void  ) const

inline

Check if it is safe to call GetPub method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3441 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetPub().

Referenced by CVariation_ref_Base::GetPub().

CanGetQuality_check()

bool CVariantProperties_Base::CanGetQuality_check ( void  ) const

inline

Check if it is safe to call GetQuality_check method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1371 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetQuality_check().

Referenced by CVariantProperties_Base::GetQuality_check(), and NSNPVariationHelper::VariantPropAsStrings().

CanGetReference()

bool CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::CanGetReference ( void  ) const

inline

Check if it is safe to call GetReference method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2579 of file Variation_ref_.hpp.

CanGetResource_link()

bool CVariantProperties_Base::CanGetResource_link ( void  ) const

inline

Check if it is safe to call GetResource_link method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1017 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetResource_link().

Referenced by CVariantProperties_Base::GetResource_link(), and NSNPVariationHelper::VariantPropAsStrings().

CanGetSample_id()

bool CVariation_ref_Base::CanGetSample_id ( void  ) const

inline

Check if it is safe to call GetSample_id method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2920 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetSample_id().

Referenced by CGuiObjectInfoVariant::GetLinks(), CVariation_ref_Base::GetSample_id(), and CGuiObjectInfoVariant::GetToolTip().

CanGetSample_ids()

bool CPopulation_data_Base::CanGetSample_ids ( void  ) const

inline

Check if it is safe to call GetSample_ids method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 518 of file Population_data_.hpp.

CanGetSeq()

bool CDelta_item_Base::CanGetSeq ( void  ) const

inline

Check if it is safe to call GetSeq method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 519 of file Delta_item_.hpp.

References CDelta_item_Base::IsSetSeq().

Referenced by CDelta_item_Base::GetSeq().

CanGetSomatic_origin()

bool CVariation_ref_Base::CanGetSomatic_origin ( void  ) const

inline

Check if it is safe to call GetSomatic_origin method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3584 of file Variation_ref_.hpp.

Referenced by CSeq_featHandler::GetLabel(), and CGuiObjectInfoVariant::GetToolTip().

CanGetSource() [1/2]

bool CPhenotype_Base::CanGetSource ( void  ) const

inline

Check if it is safe to call GetSource method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 301 of file Phenotype_.hpp.

References CPhenotype_Base::IsSetSource().

Referenced by CPhenotype_Base::GetSource().

CanGetSource() [2/2]

bool CVariation_ref_Base::C_E_Somatic_origin::CanGetSource ( void  ) const

inline

Check if it is safe to call GetSource method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2836 of file Variation_ref_.hpp.

CanGetSynonyms()

bool CVariation_ref_Base::CanGetSynonyms ( void  ) const

inline

Check if it is safe to call GetSynonyms method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3013 of file Variation_ref_.hpp.

CanGetTerm()

bool CPhenotype_Base::CanGetTerm ( void  ) const

inline

Check if it is safe to call GetTerm method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 348 of file Phenotype_.hpp.

References CPhenotype_Base::IsSetTerm().

Referenced by CPhenotype_Base::GetTerm().

CanGetTest()

bool CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::CanGetTest ( void  ) const

inline

Check if it is safe to call GetTest method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2626 of file Variation_ref_.hpp.

CanGetType() [1/2]

bool CVariation_inst_Base::CanGetType ( void  ) const

inline

Check if it is safe to call GetType method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 284 of file Variation_inst_.hpp.

References CVariation_inst_Base::IsSetType().

Referenced by CVariation_inst_Base::GetType().

CanGetType() [2/2]

bool CVariation_ref_Base::C_Data::C_Set::CanGetType ( void  ) const

inline

Check if it is safe to call GetType method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2269 of file Variation_ref_.hpp.

CanGetValidated()

bool CVariation_ref_Base::CanGetValidated ( void  ) const

inline

Check if it is safe to call GetValidated method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3181 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetValidated().

Referenced by CVariation_ref::CanGetValidated(), and CVariation_ref_Base::GetValidated().

CanGetVariant_prop()

bool CVariation_ref_Base::CanGetVariant_prop ( void  ) const

inline

Check if it is safe to call GetVariant_prop method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3160 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetVariant_prop().

Referenced by CVariation_ref::CanGetAllele_frequency(), CVariation_ref::CanGetAllele_origin(), CVariation_ref::CanGetAllele_state(), CVariation_ref::CanGetIs_ancestral_allele(), CVariation_ref::CanGetValidated(), and CVariation_ref_Base::GetVariant_prop().

CanGetVariations()

bool CVariation_ref_Base::C_Data::C_Set::CanGetVariations ( void  ) const

inline

Check if it is safe to call GetVariations method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2316 of file Variation_ref_.hpp.

CanGetVersion()

bool CVariantProperties_Base::CanGetVersion ( void  ) const

inline

Check if it is safe to call GetVersion method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 970 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetVersion().

Referenced by CVariantProperties_Base::GetVersion().

CanGetX_length()

bool CVariation_ref_Base::C_E_Consequence::C_Frameshift::CanGetX_length ( void  ) const

inline

Check if it is safe to call GetX_length method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2532 of file Variation_ref_.hpp.

CanGetXref()

bool CPhenotype_Base::CanGetXref ( void  ) const

inline

Check if it is safe to call GetXref method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 395 of file Phenotype_.hpp.

CDelta_item_Base() [1/2]

CDelta_item_Base::CDelta_item_Base ( const CDelta_item_Base &  )

private

CDelta_item_Base() [2/2]

END_CLASS_INFO CDelta_item_Base::CDelta_item_Base

(

void

)

Definition at line 243 of file Delta_item_.cpp.

References CDelta_item_Base::m_set_State.

CExt_loc() [1/2]

CExt_loc::CExt_loc ( const CExt_loc &  value )

private

CExt_loc() [2/2]

CExt_loc::CExt_loc ( void  )

inline

Definition at line 86 of file Ext_loc.hpp.

CExt_loc_Base() [1/2]

CExt_loc_Base::CExt_loc_Base ( const CExt_loc_Base &  )

private

CExt_loc_Base() [2/2]

END_CLASS_INFO CExt_loc_Base::CExt_loc_Base

(

void

)

Definition at line 98 of file Ext_loc_.cpp.

References CObject::IsAllocatedInPool(), CExt_loc_Base::m_set_State, CExt_loc_Base::ResetId(), and CExt_loc_Base::ResetLocation().

CheckSelected() [1/3]

void CDelta_item_Base::C_Seq::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 466 of file Delta_item_.hpp.

CheckSelected() [2/3]

void CVariation_ref_Base::C_Data::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 2388 of file Variation_ref_.hpp.

References CVariation_ref_Base::C_Data::m_choice, and CVariation_ref_Base::C_Data::ThrowInvalidSelection().

Referenced by CVariation_ref_Base::C_Data::GetInstance(), CVariation_ref_Base::C_Data::GetNote(), CVariation_ref_Base::C_E_Consequence::GetNote(), and CVariation_ref_Base::C_Data::GetSet().

CheckSelected() [3/3]

void CVariation_ref_Base::C_E_Consequence::CheckSelected ( E_Choice  index ) const

inline

Verify selection, throw exception if it differs from the expected.

Parameters

index

Expected selection.

Definition at line 2673 of file Variation_ref_.hpp.

References CVariation_ref_Base::C_Data::m_choice, and CVariation_ref_Base::C_Data::ThrowInvalidSelection().

Referenced by CVariation_ref_Base::C_E_Consequence::GetFrameshift(), CVariation_ref_Base::C_E_Consequence::GetLoss_of_heterozygosity(), and CVariation_ref_Base::C_E_Consequence::GetVariation().

CPhenotype() [1/2]

CPhenotype::CPhenotype ( const CPhenotype &  value )

private

CPhenotype() [2/2]

CPhenotype::CPhenotype ( void  )

inline

Definition at line 86 of file Phenotype.hpp.

CPhenotype_Base() [1/2]

CPhenotype_Base::CPhenotype_Base ( const CPhenotype_Base &  )

private

CPhenotype_Base() [2/2]

END_CLASS_INFO CPhenotype_Base::CPhenotype_Base

(

void

)

Definition at line 107 of file Phenotype_.cpp.

References CPhenotype_Base::m_set_State.

CPopulation_data() [1/2]

CPopulation_data::CPopulation_data ( const CPopulation_data &  value )

private

CPopulation_data() [2/2]

CPopulation_data::CPopulation_data ( void  )

inline

Definition at line 86 of file Population_data.hpp.

CPopulation_data_Base() [1/2]

CPopulation_data_Base::CPopulation_data_Base ( const CPopulation_data_Base &  )

private

CPopulation_data_Base() [2/2]

END_CLASS_INFO CPopulation_data_Base::CPopulation_data_Base

(

void

)

Definition at line 99 of file Population_data_.cpp.

References CPopulation_data_Base::m_set_State.

CVariantProperties_Base() [1/2]

CVariantProperties_Base::CVariantProperties_Base ( const CVariantProperties_Base &  )

private

CVariantProperties_Base() [2/2]

END_CLASS_INFO CVariantProperties_Base::CVariantProperties_Base

(

void

)

Definition at line 249 of file VariantProperties_.cpp.

References CVariantProperties_Base::m_set_State.

CVariation_inst() [1/2]

CVariation_inst::CVariation_inst ( const CVariation_inst &  value )

private

CVariation_inst() [2/2]

CVariation_inst::CVariation_inst ( void  )

inline

Definition at line 86 of file Variation_inst.hpp.

CVariation_inst_Base() [1/2]

CVariation_inst_Base::CVariation_inst_Base ( const CVariation_inst_Base &  )

private

CVariation_inst_Base() [2/2]

END_CLASS_INFO CVariation_inst_Base::CVariation_inst_Base

(

void

)

Definition at line 116 of file Variation_inst_.cpp.

References CVariation_inst_Base::m_set_State.

CVariation_ref_Base() [1/2]

CVariation_ref_Base::CVariation_ref_Base ( const CVariation_ref_Base &  )

private

CVariation_ref_Base() [2/2]

END_CLASS_INFO CVariation_ref_Base::CVariation_ref_Base

(

void

)

Definition at line 939 of file Variation_ref_.cpp.

References CObject::IsAllocatedInPool(), CVariation_ref_Base::m_set_State, and CVariation_ref_Base::ResetData().

DECLARE_INTERNAL_TYPE_INFO() [1/15]

CDelta_item_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [2/15]

CDelta_item_Base::C_Seq::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [3/15]

CExt_loc_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [4/15]

CPhenotype_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [5/15]

CPopulation_data_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [6/15]

CVariantProperties_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [7/15]

CVariation_inst_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [8/15]

CVariation_ref_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [9/15]

CVariation_ref_Base::C_Data::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [10/15]

CVariation_ref_Base::C_Data::C_Set::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [11/15]

CVariation_ref_Base::C_E_Consequence::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [12/15]

CVariation_ref_Base::C_E_Consequence::C_Frameshift::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [13/15]

CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [14/15]

CVariation_ref_Base::C_E_Somatic_origin::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [15/15]

CVariation_ref_Base::C_E_Somatic_origin::C_Condition::DECLARE_INTERNAL_TYPE_INFO

(

)

DoSelect() [1/3]

void CDelta_item_Base::C_Seq::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 72 of file Delta_item_.cpp.

References CObject::AddReference().

DoSelect() [2/3]

void CVariation_ref_Base::C_Data::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 213 of file Variation_ref_.cpp.

References CObject::AddReference(), CVariation_ref_Base::C_Data::e_Instance, CVariation_ref_Base::C_Data::e_Note, CVariation_ref_Base::C_Data::e_Set, CVariation_ref_Base::C_Data::m_choice, CVariation_ref_Base::C_Data::m_object, and CVariation_ref_Base::C_Data::m_string.

DoSelect() [3/3]

void CVariation_ref_Base::C_E_Consequence::DoSelect ( E_Choice  index, CObjectMemoryPool *  pool = 0  )

private

Definition at line 428 of file Variation_ref_.cpp.

References CObject::AddReference(), CVariation_ref_Base::C_E_Consequence::e_Frameshift, CVariation_ref_Base::C_E_Consequence::e_Loss_of_heterozygosity, CVariation_ref_Base::C_E_Consequence::e_Note, CVariation_ref_Base::C_E_Consequence::e_Variation, CVariation_ref_Base::C_E_Consequence::m_choice, CVariation_ref_Base::C_E_Consequence::m_object, and CVariation_ref_Base::C_E_Consequence::m_string.

EAction()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CDelta_item_Base::EAction ( void  )

static

Access to EAction's attributes (values, names) as defined in spec.

EAllele_origin() [1/2]

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CVariantProperties_Base::EAllele_origin ( void  )

static

Access to EAllele_origin's attributes (values, names) as defined in spec.

EAllele_origin() [2/2]

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CVariation_ref_Base::EAllele_origin ( void  )

static

Access to EAllele_origin's attributes (values, names) as defined in spec.

EAllele_state() [1/2]

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CVariantProperties_Base::EAllele_state ( void  )

static

Access to EAllele_state's attributes (values, names) as defined in spec.

EAllele_state() [2/2]

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CVariation_ref_Base::EAllele_state ( void  )

static

Access to EAllele_state's attributes (values, names) as defined in spec.

EClinical_significance()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CPhenotype_Base::EClinical_significance ( void  )

static

Access to EClinical_significance's attributes (values, names) as defined in spec.

EConfidence()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CVariantProperties_Base::EConfidence ( void  )

static

Access to EConfidence's attributes (values, names) as defined in spec.

EData_set_type()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CVariation_ref_Base::C_Data::C_Set::EData_set_type ( void  )

static

Access to EData_set_type's attributes (values, names) as defined in spec.

EEffect()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CVariantProperties_Base::EEffect ( void  )

static

Access to EEffect's attributes (values, names) as defined in spec.

EFlags()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CPopulation_data_Base::EFlags ( void  )

static

Access to EFlags's attributes (values, names) as defined in spec.

EFrequency_based_validation()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CVariantProperties_Base::EFrequency_based_validation ( void  )

static

Access to EFrequency_based_validation's attributes (values, names) as defined in spec.

EGene_location()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CVariantProperties_Base::EGene_location ( void  )

static

Access to EGene_location's attributes (values, names) as defined in spec.

EGenotype()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CVariantProperties_Base::EGenotype ( void  )

static

Access to EGenotype's attributes (values, names) as defined in spec.

EMap_weight()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CVariantProperties_Base::EMap_weight ( void  )

static

Access to EMap_weight's attributes (values, names) as defined in spec.

EMapping()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CVariantProperties_Base::EMapping ( void  )

static

Access to EMapping's attributes (values, names) as defined in spec.

EMethod_E()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CVariation_ref_Base::EMethod_E ( void  )

static

Access to EMethod_E's attributes (values, names) as defined in spec.

EObservation()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CVariation_inst_Base::EObservation ( void  )

static

Access to EObservation's attributes (values, names) as defined in spec.

EQuality_check()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CVariantProperties_Base::EQuality_check ( void  )

static

Access to EQuality_check's attributes (values, names) as defined in spec.

EResource_link()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CVariantProperties_Base::EResource_link ( void  )

static

Access to EResource_link's attributes (values, names) as defined in spec.

EType()

static const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME() CVariation_inst_Base::EType ( void  )

static

Access to EType's attributes (values, names) as defined in spec.

GetAction()

CDelta_item_Base::TAction CDelta_item_Base::GetAction ( void  ) const

inline

Get the Action member data.

Returns

Copy of the member data.

Definition at line 627 of file Delta_item_.hpp.

References CDelta_item_Base::m_Action.

Referenced by variation::CVariationUtil::ChangeToDelins(), variation_ref::CVariationUtil::ChangeToDelins(), variation_ref::CVariationUtil::CheckExonBoundary(), s_ContainsOffset(), variation::CVariationUtil::s_IsInstStrandFlippable(), variation_ref::CVariationUtil::s_ResolveIntronicOffsets(), variation_ref::CVariationUtil::SetReferenceSequence(), and variation_ref::CVariationUtil::x_SetVariantProperties().

GetAllele_frequency() [1/3]

CPopulation_data_Base::TAllele_frequency CPopulation_data_Base::GetAllele_frequency ( void  ) const

inline

Get the Allele_frequency member data.

Returns

Copy of the member data.

Definition at line 556 of file Population_data_.hpp.

References CPopulation_data_Base::CanGetAllele_frequency(), CPopulation_data_Base::m_Allele_frequency, and CSerialObject::ThrowUnassigned().

GetAllele_frequency() [2/3]

CVariantProperties_Base::TAllele_frequency CVariantProperties_Base::GetAllele_frequency ( void  ) const

inline

Get the Allele_frequency member data.

Returns

Copy of the member data.

Definition at line 1619 of file VariantProperties_.hpp.

References CVariantProperties_Base::CanGetAllele_frequency(), CVariantProperties_Base::m_Allele_frequency, and CSerialObject::ThrowUnassigned().

Referenced by CVariation_ref::GetAllele_frequency(), and CVcfWriter::x_WriteFeatureInfo().

GetAllele_frequency() [3/3]

CVariation_ref_Base::TAllele_frequency CVariation_ref_Base::GetAllele_frequency ( void  ) const

inline

Get the Allele_frequency member data.

Returns

Copy of the member data.

Definition at line 3360 of file Variation_ref_.hpp.

References CVariation_ref_Base::CanGetAllele_frequency(), CVariation_ref_Base::m_Allele_frequency, and CSerialObject::ThrowUnassigned().

Referenced by CVariation_ref::GetAllele_frequency(), CVariation_ref::PostRead(), and CVariation_ref::SetAllele_frequency().

GetAllele_origin() [1/2]

CVariantProperties_Base::TAllele_origin CVariantProperties_Base::GetAllele_origin ( void  ) const

inline

Get the Allele_origin member data.

Returns

Copy of the member data.

Definition at line 1525 of file VariantProperties_.hpp.

References CVariantProperties_Base::CanGetAllele_origin(), CVariantProperties_Base::m_Allele_origin, and CSerialObject::ThrowUnassigned().

Referenced by CVariation_ref::GetAllele_origin(), CSeq_featHandler::GetLabel(), and CGuiObjectInfoVariant::GetToolTip().

GetAllele_origin() [2/2]

CVariation_ref_Base::TAllele_origin CVariation_ref_Base::GetAllele_origin ( void  ) const

inline

Get the Allele_origin member data.

Returns

Copy of the member data.

Definition at line 3266 of file Variation_ref_.hpp.

References CVariation_ref_Base::CanGetAllele_origin(), CVariation_ref_Base::m_Allele_origin, and CSerialObject::ThrowUnassigned().

Referenced by CVariation_ref::GetAllele_origin(), CVariation_ref::PostRead(), and CVariation_ref::SetAllele_origin().

GetAllele_state() [1/2]

CVariantProperties_Base::TAllele_state CVariantProperties_Base::GetAllele_state ( void  ) const

inline

Get the Allele_state member data.

Returns

Copy of the member data.

Definition at line 1572 of file VariantProperties_.hpp.

References CVariantProperties_Base::CanGetAllele_state(), CVariantProperties_Base::m_Allele_state, and CSerialObject::ThrowUnassigned().

Referenced by CVariation_ref::GetAllele_state().

GetAllele_state() [2/2]

CVariation_ref_Base::TAllele_state CVariation_ref_Base::GetAllele_state ( void  ) const

inline

Get the Allele_state member data.

Returns

Copy of the member data.

Definition at line 3313 of file Variation_ref_.hpp.

References CVariation_ref_Base::CanGetAllele_state(), CVariation_ref_Base::m_Allele_state, and CSerialObject::ThrowUnassigned().

Referenced by CVariation_ref::GetAllele_state(), CVariation_ref::PostRead(), and CVariation_ref::SetAllele_state().

GetChromosomes_tested()

CPopulation_data_Base::TChromosomes_tested CPopulation_data_Base::GetChromosomes_tested ( void  ) const

inline

Get the Chromosomes_tested member data.

Returns

Copy of the member data.

Definition at line 484 of file Population_data_.hpp.

References CPopulation_data_Base::CanGetChromosomes_tested(), CPopulation_data_Base::m_Chromosomes_tested, and CSerialObject::ThrowUnassigned().

GetClinical_significance()

CPhenotype_Base::TClinical_significance CPhenotype_Base::GetClinical_significance ( void  ) const

inline

Get the Clinical_significance member data.

Returns

Copy of the member data.

Definition at line 433 of file Phenotype_.hpp.

References CPhenotype_Base::CanGetClinical_significance(), CPhenotype_Base::m_Clinical_significance, and CSerialObject::ThrowUnassigned().

GetClinical_test()

const CVariation_ref_Base::TClinical_test & CVariation_ref_Base::GetClinical_test ( void  ) const

inline

Get the Clinical_test member data.

Returns

Reference to the member data.

Definition at line 3234 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Clinical_test.

GetCondition()

const CVariation_ref_Base::C_E_Somatic_origin::TCondition & CVariation_ref_Base::C_E_Somatic_origin::GetCondition ( void  ) const

inline

Get the Condition member data.

Returns

Reference to the member data.

Definition at line 2863 of file Variation_ref_.hpp.

References CSerialObject::ThrowUnassigned().

GetConfidence()

CVariantProperties_Base::TConfidence CVariantProperties_Base::GetConfidence ( void  ) const

inline

Get the Confidence member data.

Returns

Copy of the member data.

Definition at line 1431 of file VariantProperties_.hpp.

References CVariantProperties_Base::CanGetConfidence(), CVariantProperties_Base::m_Confidence, and CSerialObject::ThrowUnassigned().

GetConsequence()

const CVariation_ref_Base::TConsequence & CVariation_ref_Base::GetConsequence ( void  ) const

inline

Get the Consequence member data.

Returns

Reference to the member data.

Definition at line 3498 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Consequence.

Referenced by CGvfWriteRecord::AssignType(), s_IsLOH(), and variation::CVariationUtil::x_AsVariation().

GetData()

const CVariation_ref_Base::TData & CVariation_ref_Base::GetData ( void  ) const

inline

Get the Data member data.

Returns

Reference to the member data.

Definition at line 3468 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Data, and CVariation_ref_Base::ResetData().

Referenced by variation_ref::CVariationUtil::AdjustDelinsToInterval(), CGvfWriteRecord::AssignType(), variation_ref::CVariationUtil::ChangeToDelins(), variation_ref::CVariationUtil::CheckExonBoundary(), g_ValidateVariationSeqfeat(), CSeq_featHandler::GetLabel(), CGuiObjectInfoVariant::GetToolTip(), CVariationUtilities::GetVariationRefAlt(), CVariationUtilities::GetVariationType(), NSnpGui::GetVcfType(), CVariation_ref::IsCNV(), CVariation_ref::IsComplex(), CFeatGlyph::IsDbVar(), CVariation_ref::IsDeletion(), CVariation_ref::IsDeletionInsertion(), CVariation_ref::IsEversion(), CVariation_ref::IsGain(), CVariation_ref::IsInsertion(), CVariationUtilities::IsIntronicVariation(), CVariation_ref::IsInversion(), CVariation_ref::IsLoss(), CVariation_ref::IsMicrosatellite(), CVariation_ref::IsMNP(), CVariation_ref::IsOther(), CVariationUtilities::IsReferenceCorrect(), CVariation_ref::IsSNV(), CVariation_ref::IsTranslocation(), CVariation_ref::IsUniparentalDisomy(), CVariation_ref::IsUnknown(), variation_ref::CVariationUtil::PrecursorToProt(), variation_ref::RepackageAssertedSequence(), variation_ref::CVariationUtil::s_AddIntronicOffsets(), variation_ref::CVariationUtil::s_FactorOutLocsInPlace(), s_GetLiteralLength(), variation_ref::CVariationUtil::s_PropagateLocsInPlace(), variation_ref::CVariationUtil::s_Remap(), variation_ref::CVariationUtil::s_ResolveIntronicOffsets(), variation_ref::CVariationUtil::SetReferenceSequence(), variation_ref::CVariationUtil::SetVariantProperties(), variation::CVariationUtil::x_AsVariation(), NSNPVariationHelper::x_CommonConvertFeat(), CVariationUtilities::x_FixAlleles(), variation_ref::CVariationUtil::x_ProtToPrecursor(), CVariationUtilities::x_SetReference(), CVariationNormalization_base< T >::x_Shift(), variation_ref::CHgvsParser::x_unwrap_iff_singleton(), CModifySeqId::x_UpdateVariation(), CReportTrim::x_UpdateVariation(), and CVcfWriter::x_WriteFeature().

GetDelta()

const CVariation_inst_Base::TDelta & CVariation_inst_Base::GetDelta ( void  ) const

inline

Get the Delta member data.

Returns

Reference to the member data.

Definition at line 337 of file Variation_inst_.hpp.

References CVariation_inst_Base::m_Delta.

Referenced by variation_ref::CVariationUtil::AdjustDelinsToInterval(), variation::CVariationUtil::AttachSeq(), variation::CVariationUtil::ChangeToDelins(), variation_ref::CVariationUtil::ChangeToDelins(), variation_ref::CVariationUtil::CheckExonBoundary(), CSeq_featHandler::GetLabel(), CGuiObjectInfoVariant::GetToolTip(), NSnpGui::GetVcfType(), CPostProcessUtils::HasIntronOffset(), CVariation_ref::IsGain(), CVariation_ref::IsLoss(), CVariationUtilities::IsReferenceCorrect(), variation_ref::CVariationUtil::PrecursorToProt(), s_ContainsOffset(), variation::CVariationUtil::s_ConvertInstOffsetsToPlacementOffsets(), variation::CVariationUtil::s_FindAssertedLiteral(), s_GetAltRefFromInst(), s_GetLiteralLength(), variation::CVariationUtil::s_IsInstStrandFlippable(), variation_ref::CVariationUtil::s_ResolveIntronicOffsets(), variation_ref::CVariationUtil::SetReferenceSequence(), CValidateVariant::ValidateIdentityInst(), CValidateVariant::ValidateMicrosatelliteInst(), variation::CVariationUtil::x_AdjustDelinsToInterval(), variation::CHgvsParser::x_AdjustPlacementForHgvs(), variation::CHgvsParser::x_AsHgvsInstExpression(), variation_ref::CHgvsParser::x_GetInstData(), variation_ref::CHgvsParser::x_GetInstLength(), variation::CHgvsParser::x_GetInstLength(), CVcfWriter::x_GetTypeRefAlt(), variation::CVariationUtil::x_InferNAfromAA(), variation_ref::CHgvsParser::x_InstToString(), variation_ref::CVariationUtil::x_ProtToPrecursor(), variation_ref::CVariationUtil::x_SetVariantProperties(), CVariationNormalization_base< T >::x_Shift(), and CReportTrim::x_UpdateVariation().

GetDescription() [1/2]

const CVariation_ref_Base::C_E_Somatic_origin::C_Condition::TDescription & CVariation_ref_Base::C_E_Somatic_origin::C_Condition::GetDescription ( void  ) const

inline

Get the Description member data.

Returns

Reference to the member data.

Definition at line 2770 of file Variation_ref_.hpp.

References CVariation_ref_Base::CanGetDescription(), CVariation_ref_Base::m_Description, and CSerialObject::ThrowUnassigned().

GetDescription() [2/2]

const CVariation_ref_Base::TDescription & CVariation_ref_Base::GetDescription ( void  ) const

inline

Get the Description member data.

Returns

Reference to the member data.

Definition at line 3044 of file Variation_ref_.hpp.

References CVariation_ref_Base::CanGetDescription(), CVariation_ref_Base::m_Description, and CSerialObject::ThrowUnassigned().

Referenced by variation::CVariationUtil::x_AsVariation().

GetEffect()

CVariantProperties_Base::TEffect CVariantProperties_Base::GetEffect ( void  ) const

inline

Get the Effect member data.

Returns

Copy of the member data.

Definition at line 1124 of file VariantProperties_.hpp.

References CVariantProperties_Base::CanGetEffect(), CVariantProperties_Base::m_Effect, and CSerialObject::ThrowUnassigned().

Referenced by variation_ref::CVariationUtil::AsSOTerms(), variation::CVariationUtil::AsSOTerms(), NSNPVariationHelper::VariantPropAsStrings(), variation_ref::CVariationUtil::x_SetVariantProperties(), and CVcfWriter::x_WriteFeatureInfo().

GetExt()

const CVariation_ref_Base::TExt & CVariation_ref_Base::GetExt ( void  ) const

inline

Get the Ext member data.

Returns

Reference to the member data.

Definition at line 3569 of file Variation_ref_.hpp.

References CVariation_ref_Base::CanGetExt(), CVariation_ref_Base::m_Ext, and CSerialObject::ThrowUnassigned().

Referenced by CVariation_ref::GetExt().

GetExt_locs()

const CVariation_ref_Base::TExt_locs & CVariation_ref_Base::GetExt_locs ( void  ) const

inline

Get the Ext_locs member data.

Returns

Reference to the member data.

Definition at line 3544 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Ext_locs.

Referenced by CVariation_ref::GetExt_locs().

GetFlags()

CPopulation_data_Base::TFlags CPopulation_data_Base::GetFlags ( void  ) const

inline

Get the Flags member data.

Returns

Copy of the member data.

Definition at line 603 of file Population_data_.hpp.

References CPopulation_data_Base::CanGetFlags(), CPopulation_data_Base::m_Flags, and CSerialObject::ThrowUnassigned().

GetFrameshift()

const CVariation_ref_Base::C_E_Consequence::TFrameshift & CVariation_ref_Base::C_E_Consequence::GetFrameshift

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 497 of file Variation_ref_.cpp.

References CVariation_ref_Base::C_E_Consequence::CheckSelected(), CVariation_ref_Base::C_E_Consequence::e_Frameshift, and CVariation_ref_Base::C_E_Consequence::m_object.

GetFrequency_based_validation()

CVariantProperties_Base::TFrequency_based_validation CVariantProperties_Base::GetFrequency_based_validation ( void  ) const

inline

Get the Frequency_based_validation member data.

Returns

Copy of the member data.

Definition at line 1265 of file VariantProperties_.hpp.

References CVariantProperties_Base::CanGetFrequency_based_validation(), CVariantProperties_Base::m_Frequency_based_validation, and CSerialObject::ThrowUnassigned().

Referenced by NSNPVariationHelper::VariantPropAsStrings(), and CVcfWriter::x_WriteFeatureInfo().

GetGene_location()

CVariantProperties_Base::TGene_location CVariantProperties_Base::GetGene_location ( void  ) const

inline

Get the Gene_location member data.

Returns

Copy of the member data.

Definition at line 1077 of file VariantProperties_.hpp.

References CVariantProperties_Base::CanGetGene_location(), CVariantProperties_Base::m_Gene_location, and CSerialObject::ThrowUnassigned().

Referenced by variation_ref::CVariationUtil::AsSOTerms(), variation::CVariationUtil::AsSOTerms(), variation_ref::CVariationUtil::SetVariantProperties(), NSNPVariationHelper::VariantPropAsStrings(), variation_ref::CVariationUtil::x_SetVariantPropertiesForIntronic(), and CVcfWriter::x_WriteFeatureInfo().

GetGenotype()

CVariantProperties_Base::TGenotype CVariantProperties_Base::GetGenotype ( void  ) const

inline

Get the Genotype member data.

Returns

Copy of the member data.

Definition at line 1312 of file VariantProperties_.hpp.

References CVariantProperties_Base::CanGetGenotype(), CVariantProperties_Base::m_Genotype, and CSerialObject::ThrowUnassigned().

Referenced by CVcfWriter::x_WriteFeatureInfo().

GetGenotype_frequency()

CPopulation_data_Base::TGenotype_frequency CPopulation_data_Base::GetGenotype_frequency ( void  ) const

inline

Get the Genotype_frequency member data.

Returns

Copy of the member data.

Definition at line 437 of file Population_data_.hpp.

References CPopulation_data_Base::CanGetGenotype_frequency(), CPopulation_data_Base::m_Genotype_frequency, and CSerialObject::ThrowUnassigned().

GetId() [1/2]

const CExt_loc_Base::TId & CExt_loc_Base::GetId ( void  ) const

inline

Get the Id member data.

Returns

Reference to the member data.

Definition at line 211 of file Ext_loc_.hpp.

References CExt_loc_Base::m_Id, and CExt_loc_Base::ResetId().

GetId() [2/2]

const CVariation_ref_Base::TId & CVariation_ref_Base::GetId ( void  ) const

inline

Get the Id member data.

Returns

Reference to the member data.

Definition at line 2884 of file Variation_ref_.hpp.

References CVariation_ref_Base::CanGetId(), CVariation_ref_Base::m_Id, and CSerialObject::ThrowUnassigned().

Referenced by CSeq_featHandler::GetLabel(), CGuiObjectInfoVariant::GetLinks(), CGuiObjectInfoVariant::GetToolTip(), CFeatGlyph::IsDbVar(), NSearchFeatPanel::s_GetFeatureLabel(), s_GetVariationLabel(), CGvfWriteRecord::x_AssignAttributeID(), variation::CVariationUtil::x_AsVariation(), CVcfWriter::x_WriteFeatureId(), and CVcfWriter::x_WriteFeatureInfo().

GetInstance()

const CVariation_ref_Base::C_Data::TInstance & CVariation_ref_Base::C_Data::GetInstance

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 257 of file Variation_ref_.cpp.

References CVariation_ref_Base::C_Data::CheckSelected(), CVariation_ref_Base::C_Data::e_Instance, and CVariation_ref_Base::C_Data::m_object.

Referenced by CGvfWriteRecord::AssignType(), variation_ref::CVariationUtil::CheckExonBoundary(), g_ValidateVariationSeqfeat(), CSeq_featHandler::GetLabel(), CGuiObjectInfoVariant::GetToolTip(), CVariationUtilities::GetVariationRefAlt(), CVariationUtilities::GetVariationType(), CVariation_ref::IsCNV(), CVariation_ref::IsDeletion(), CVariation_ref::IsDeletionInsertion(), CVariation_ref::IsEversion(), CVariation_ref::IsGain(), CVariation_ref::IsInsertion(), CVariationUtilities::IsIntronicVariation(), CVariation_ref::IsInversion(), CVariation_ref::IsLoss(), CVariation_ref::IsMicrosatellite(), CVariation_ref::IsMNP(), CVariationUtilities::IsReferenceCorrect(), CVariation_ref::IsSNV(), CVariation_ref::IsTranslocation(), variation_ref::CVariationUtil::PrecursorToProt(), s_GetLiteralLength(), variation_ref::CVariationUtil::s_ResolveIntronicOffsets(), variation_ref::CVariationUtil::SetReferenceSequence(), variation::CVariationUtil::x_AsVariation(), NSNPVariationHelper::x_CommonConvertFeat(), variation_ref::CVariationUtil::x_ProtToPrecursor(), CModifySeqId::x_UpdateVariation(), CReportTrim::x_UpdateVariation(), and CVcfWriter::x_WriteFeature().

GetIs_ancestral_allele() [1/2]

CVariantProperties_Base::TIs_ancestral_allele CVariantProperties_Base::GetIs_ancestral_allele ( void  ) const

inline

Get the Is_ancestral_allele member data.

Returns

Copy of the member data.

Definition at line 1666 of file VariantProperties_.hpp.

References CVariantProperties_Base::CanGetIs_ancestral_allele(), CVariantProperties_Base::m_Is_ancestral_allele, and CSerialObject::ThrowUnassigned().

Referenced by CVariation_ref::GetIs_ancestral_allele().

GetIs_ancestral_allele() [2/2]

CVariation_ref_Base::TIs_ancestral_allele CVariation_ref_Base::GetIs_ancestral_allele ( void  ) const

inline

Get the Is_ancestral_allele member data.

Returns

Copy of the member data.

Definition at line 3407 of file Variation_ref_.hpp.

References CVariation_ref_Base::CanGetIs_ancestral_allele(), CVariation_ref_Base::m_Is_ancestral_allele, and CSerialObject::ThrowUnassigned().

Referenced by CVariation_ref::GetIs_ancestral_allele(), CVariation_ref::PostRead(), and CVariation_ref::SetIs_ancestral_allele().

GetLiteral()

const CDelta_item_Base::C_Seq::TLiteral & CDelta_item_Base::C_Seq::GetLiteral

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 104 of file Delta_item_.cpp.

Referenced by variation::CVariationUtil::ChangeToDelins(), variation_ref::CVariationUtil::ChangeToDelins(), variation::CVariationUtil::FlipStrand(), NSNPVariationHelper::GetDeltas(), CGuiObjectInfoVariant::GetToolTip(), NSnpGui::GetVcfType(), CVariationUtilities::IsReferenceCorrect(), s_ContainsSeqDataIupacna(), s_GetAltRefFromInst(), variation_ref::CVariationUtil::s_ResolveIntronicOffsets(), variation::CVariationUtil::TranslateNAtoAA(), CFeatureItem::x_AddQualsVariation(), variation_ref::CHgvsParser::x_GetInstData(), variation_ref::CHgvsParser::x_GetInstLength(), variation::CHgvsParser::x_GetInstLength(), variation_ref::CVariationUtil::x_SetVariantProperties(), and CVariationNormalization_base< T >::x_Shift().

GetLoc()

const CDelta_item_Base::C_Seq::TLoc & CDelta_item_Base::C_Seq::GetLoc

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 126 of file Delta_item_.cpp.

Referenced by variation::CVariationUtil::ChangeToDelins(), variation_ref::CVariationUtil::ChangeToDelins(), variation_ref::CVariationUtil::s_Remap(), variation_ref::CHgvsParser::x_GetInstData(), variation_ref::CHgvsParser::x_GetInstLength(), and variation::CHgvsParser::x_GetInstLength().

GetLocation() [1/2]

const CExt_loc_Base::TLocation & CExt_loc_Base::GetLocation ( void  ) const

inline

Get the Location member data.

Returns

Reference to the member data.

Definition at line 241 of file Ext_loc_.hpp.

References CExt_loc_Base::m_Location, and CExt_loc_Base::ResetLocation().

GetLocation() [2/2]

const CVariation_ref_Base::TLocation & CVariation_ref_Base::GetLocation ( void  ) const

inline

Get the Location member data.

Returns

Reference to the member data.

Definition at line 3523 of file Variation_ref_.hpp.

References CVariation_ref_Base::CanGetLocation(), CVariation_ref_Base::m_Location, and CSerialObject::ThrowUnassigned().

Referenced by CVariation_ref::GetLocation().

GetLoss_of_heterozygosity()

const CVariation_ref_Base::C_E_Consequence::TLoss_of_heterozygosity & CVariation_ref_Base::C_E_Consequence::GetLoss_of_heterozygosity

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 519 of file Variation_ref_.cpp.

References CVariation_ref_Base::C_E_Consequence::CheckSelected(), CVariation_ref_Base::C_E_Consequence::e_Loss_of_heterozygosity, and CVariation_ref_Base::C_E_Consequence::m_object.

GetMap_weight()

CVariantProperties_Base::TMap_weight CVariantProperties_Base::GetMap_weight ( void  ) const

inline

Get the Map_weight member data.

Returns

Copy of the member data.

Definition at line 1218 of file VariantProperties_.hpp.

References CVariantProperties_Base::CanGetMap_weight(), CVariantProperties_Base::m_Map_weight, and CSerialObject::ThrowUnassigned().

GetMapping()

CVariantProperties_Base::TMapping CVariantProperties_Base::GetMapping ( void  ) const

inline

Get the Mapping member data.

Returns

Copy of the member data.

Definition at line 1171 of file VariantProperties_.hpp.

References CVariantProperties_Base::CanGetMapping(), CVariantProperties_Base::m_Mapping, and CSerialObject::ThrowUnassigned().

Referenced by NSNPVariationHelper::VariantPropAsStrings().

GetMethod()

const CVariation_ref_Base::TMethod & CVariation_ref_Base::GetMethod ( void  ) const

inline

Get the Method member data.

Returns

Reference to the member data.

Definition at line 3116 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Method.

Referenced by CSeq_featHandler::GetLabel(), and variation::CVariationUtil::x_AsVariation().

GetMultiplier()

CDelta_item_Base::TMultiplier CDelta_item_Base::GetMultiplier ( void  ) const

inline

Get the Multiplier member data.

Returns

Copy of the member data.

Definition at line 553 of file Delta_item_.hpp.

References CDelta_item_Base::CanGetMultiplier(), CDelta_item_Base::m_Multiplier, and CSerialObject::ThrowUnassigned().

Referenced by variation::CVariationUtil::ChangeToDelins(), variation_ref::CVariationUtil::ChangeToDelins(), variation_ref::CVariationUtil::s_ResolveIntronicOffsets(), variation_ref::CHgvsParser::x_GetInstData(), variation_ref::CHgvsParser::x_GetInstLength(), and variation::CHgvsParser::x_GetInstLength().

GetMultiplier_fuzz()

const CDelta_item_Base::TMultiplier_fuzz & CDelta_item_Base::GetMultiplier_fuzz ( void  ) const

inline

Get the Multiplier_fuzz member data.

Returns

Reference to the member data.

Definition at line 593 of file Delta_item_.hpp.

References CDelta_item_Base::CanGetMultiplier_fuzz(), CDelta_item_Base::m_Multiplier_fuzz, and CSerialObject::ThrowUnassigned().

GetName() [1/2]

const CVariation_ref_Base::C_Data::C_Set::TName & CVariation_ref_Base::C_Data::C_Set::GetName ( void  ) const

inline

Get the Name member data.

Returns

Reference to the member data.

Definition at line 2347 of file Variation_ref_.hpp.

References CVariation_ref_Base::CanGetName(), CVariation_ref_Base::m_Name, and CSerialObject::ThrowUnassigned().

Referenced by variation::CVariationUtil::x_AsVariation().

GetName() [2/2]

const CVariation_ref_Base::TName & CVariation_ref_Base::GetName ( void  ) const

inline

Get the Name member data.

Returns

Reference to the member data.

Definition at line 2972 of file Variation_ref_.hpp.

References CVariation_ref_Base::CanGetName(), CVariation_ref_Base::m_Name, and CSerialObject::ThrowUnassigned().

Referenced by s_GetVariationLabel(), CGvfWriteRecord::x_AssignAttributeName(), and variation::CVariationUtil::x_AsVariation().

GetNote() [1/2]

const CVariation_ref_Base::C_Data::TNote & CVariation_ref_Base::C_Data::GetNote ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 2429 of file Variation_ref_.hpp.

References CVariation_ref_Base::C_Data::CheckSelected(), CVariation_ref_Base::C_Data::e_Note, and CVariation_ref_Base::C_Data::m_string.

Referenced by variation::CVariationUtil::x_AsVariation().

GetNote() [2/2]

const CVariation_ref_Base::C_E_Consequence::TNote & CVariation_ref_Base::C_E_Consequence::GetNote ( void  ) const

inline

Get the variant data.

Returns

Reference to the data.

Definition at line 2726 of file Variation_ref_.hpp.

References CVariation_ref_Base::C_Data::CheckSelected(), CVariation_ref_Base::C_Data::e_Note, and CVariation_ref_Base::C_Data::m_string.

GetObject_id()

const CVariation_ref_Base::C_E_Somatic_origin::C_Condition::TObject_id & CVariation_ref_Base::C_E_Somatic_origin::C_Condition::GetObject_id ( void  ) const

inline

Get the Object_id member data.

Returns

Reference to the member data.

Definition at line 2817 of file Variation_ref_.hpp.

GetObservation()

CVariation_inst_Base::TObservation CVariation_inst_Base::GetObservation ( void  ) const

inline

Get the Observation member data.

Returns

Copy of the member data.

Definition at line 369 of file Variation_inst_.hpp.

References CVariation_inst_Base::CanGetObservation(), CVariation_inst_Base::m_Observation, and CSerialObject::ThrowUnassigned().

Referenced by variation::CVariationUtil::AttachProteinConsequences(), variation::CVariationUtil::AttachSeq(), CGuiObjectInfoVariant::GetToolTip(), NSnpGui::GetVcfType(), variation::CVariationUtil::s_FindAssertedLiteral(), variation_ref::CVariationUtil::SetReferenceSequence(), variation_ref::CVariationUtil::SetVariantProperties(), variation::CVariationUtil::x_InferNAfromAA(), and variation_ref::CVariationUtil::x_ProtToPrecursor().

GetOther_ids()

const CVariation_ref_Base::TOther_ids & CVariation_ref_Base::GetOther_ids ( void  ) const

inline

Get the Other_ids member data.

Returns

Reference to the member data.

Definition at line 2947 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Other_ids.

Referenced by variation::CVariationUtil::x_AsVariation(), and CVcfWriter::x_WriteFeatureInfo().

GetOther_validation()

CVariantProperties_Base::TOther_validation CVariantProperties_Base::GetOther_validation ( void  ) const

inline

Get the Other_validation member data.

Returns

Copy of the member data.

Definition at line 1478 of file VariantProperties_.hpp.

References CVariantProperties_Base::CanGetOther_validation(), CVariantProperties_Base::m_Other_validation, and CSerialObject::ThrowUnassigned().

Referenced by CSeq_featHandler::GetLabel(), CGuiObjectInfoVariant::GetToolTip(), and CVariation_ref::GetValidated().

GetParent_id()

const CVariation_ref_Base::TParent_id & CVariation_ref_Base::GetParent_id ( void  ) const

inline

Get the Parent_id member data.

Returns

Reference to the member data.

Definition at line 2905 of file Variation_ref_.hpp.

References CVariation_ref_Base::CanGetParent_id(), CVariation_ref_Base::m_Parent_id, and CSerialObject::ThrowUnassigned().

Referenced by CSeq_featHandler::GetLabel(), CGuiObjectInfoVariant::GetLinks(), CGuiObjectInfoVariant::GetToolTip(), CGvfWriteRecord::x_AssignAttributeParent(), and variation::CVariationUtil::x_AsVariation().

GetPhase()

CVariation_ref_Base::C_E_Consequence::C_Frameshift::TPhase CVariation_ref_Base::C_E_Consequence::C_Frameshift::GetPhase ( void  ) const

inline

Get the Phase member data.

Returns

Copy of the member data.

Definition at line 2498 of file Variation_ref_.hpp.

References CSerialObject::ThrowUnassigned().

GetPhenotype()

const CVariation_ref_Base::TPhenotype & CVariation_ref_Base::GetPhenotype ( void  ) const

inline

Get the Phenotype member data.

Returns

Reference to the member data.

Definition at line 3091 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Phenotype.

Referenced by NSnp::ClinSigAsString(), CSeq_featHandler::GetLabel(), CGuiObjectInfoVariant::GetToolTip(), and variation::CVariationUtil::x_AsVariation().

GetPopulation()

const CPopulation_data_Base::TPopulation & CPopulation_data_Base::GetPopulation ( void  ) const

inline

Get the Population member data.

Returns

Reference to the member data.

Definition at line 383 of file Population_data_.hpp.

References CPopulation_data_Base::CanGetPopulation(), CPopulation_data_Base::m_Population, and CSerialObject::ThrowUnassigned().

GetPopulation_data()

const CVariation_ref_Base::TPopulation_data & CVariation_ref_Base::GetPopulation_data ( void  ) const

inline

Get the Population_data member data.

Returns

Reference to the member data.

Definition at line 3141 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Population_data.

GetProject_data()

const CVariantProperties_Base::TProject_data & CVariantProperties_Base::GetProject_data ( void  ) const

inline

Get the Project_data member data.

Returns

Reference to the member data.

Definition at line 1352 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Project_data.

GetPub()

const CVariation_ref_Base::TPub & CVariation_ref_Base::GetPub ( void  ) const

inline

Get the Pub member data.

Returns

Reference to the member data.

Definition at line 3447 of file Variation_ref_.hpp.

References CVariation_ref_Base::CanGetPub(), CVariation_ref_Base::m_Pub, and CSerialObject::ThrowUnassigned().

GetQuality_check()

CVariantProperties_Base::TQuality_check CVariantProperties_Base::GetQuality_check ( void  ) const

inline

Get the Quality_check member data.

Returns

Copy of the member data.

Definition at line 1384 of file VariantProperties_.hpp.

References CVariantProperties_Base::CanGetQuality_check(), CVariantProperties_Base::m_Quality_check, and CSerialObject::ThrowUnassigned().

Referenced by NSNPVariationHelper::VariantPropAsStrings(), and CVcfWriter::x_WriteFeatureInfo().

GetReference()

const CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::TReference & CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::GetReference ( void  ) const

inline

Get the Reference member data.

Returns

Reference to the member data.

Definition at line 2585 of file Variation_ref_.hpp.

References CSerialObject::ThrowUnassigned().

GetResource_link()

CVariantProperties_Base::TResource_link CVariantProperties_Base::GetResource_link ( void  ) const

inline

Get the Resource_link member data.

Returns

Copy of the member data.

Definition at line 1030 of file VariantProperties_.hpp.

References CVariantProperties_Base::CanGetResource_link(), CVariantProperties_Base::m_Resource_link, and CSerialObject::ThrowUnassigned().

Referenced by NSNPVariationHelper::VariantPropAsStrings(), and CVcfWriter::x_WriteFeatureInfo().

GetSample_id()

const CVariation_ref_Base::TSample_id & CVariation_ref_Base::GetSample_id ( void  ) const

inline

Get the Sample_id member data.

Returns

Reference to the member data.

Definition at line 2926 of file Variation_ref_.hpp.

References CVariation_ref_Base::CanGetSample_id(), CVariation_ref_Base::m_Sample_id, and CSerialObject::ThrowUnassigned().

Referenced by CGuiObjectInfoVariant::GetLinks(), CGuiObjectInfoVariant::GetToolTip(), and variation::CVariationUtil::x_AsVariation().

GetSample_ids()

const CPopulation_data_Base::TSample_ids & CPopulation_data_Base::GetSample_ids ( void  ) const

inline

Get the Sample_ids member data.

Returns

Reference to the member data.

Definition at line 524 of file Population_data_.hpp.

References CPopulation_data_Base::m_Sample_ids.

GetSeq()

const CDelta_item_Base::TSeq & CDelta_item_Base::GetSeq ( void  ) const

inline

Get the Seq member data.

Returns

Reference to the member data.

Definition at line 525 of file Delta_item_.hpp.

References CDelta_item_Base::CanGetSeq(), CDelta_item_Base::m_Seq, and CSerialObject::ThrowUnassigned().

Referenced by variation::CVariationUtil::ChangeToDelins(), variation_ref::CVariationUtil::ChangeToDelins(), variation::CVariationUtil::FlipStrand(), CVariationUtilities::IsReferenceCorrect(), s_ContainsSeqDataIupacna(), s_GetAltRefFromInst(), variation_ref::CVariationUtil::s_Remap(), variation_ref::CVariationUtil::s_ResolveIntronicOffsets(), variation::CVariationUtil::TranslateNAtoAA(), variation_ref::CHgvsParser::x_GetInstData(), variation_ref::CHgvsParser::x_GetInstLength(), variation::CHgvsParser::x_GetInstLength(), variation_ref::CVariationUtil::x_SetVariantProperties(), and CVariationNormalization_base< T >::x_Shift().

GetSet()

const CVariation_ref_Base::C_Data::TSet & CVariation_ref_Base::C_Data::GetSet

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 279 of file Variation_ref_.cpp.

References CVariation_ref_Base::C_Data::CheckSelected(), CVariation_ref_Base::C_Data::e_Set, and CVariation_ref_Base::C_Data::m_object.

Referenced by g_ValidateVariationSeqfeat(), CGuiObjectInfoVariant::GetToolTip(), CVariationUtilities::GetVariationRefAlt(), CVariationUtilities::GetVariationType(), NSnpGui::GetVcfType(), CVariationUtilities::IsIntronicVariation(), CVariation_ref::IsOther(), CVariationUtilities::IsReferenceCorrect(), variation_ref::CVariationUtil::SetReferenceSequence(), variation::CVariationUtil::x_AsVariation(), CVariationUtilities::x_SetReference(), CVariationNormalization_base< T >::x_Shift(), variation_ref::CHgvsParser::x_unwrap_iff_singleton(), CModifySeqId::x_UpdateVariation(), CReportTrim::x_UpdateVariation(), and CVcfWriter::x_WriteFeature().

GetSomatic_origin()

const CVariation_ref_Base::TSomatic_origin & CVariation_ref_Base::GetSomatic_origin ( void  ) const

inline

Get the Somatic_origin member data.

Returns

Reference to the member data.

Definition at line 3590 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Somatic_origin.

Referenced by CSeq_featHandler::GetLabel(), CGuiObjectInfoVariant::GetToolTip(), and variation::CVariationUtil::x_AsVariation().

GetSource() [1/2]

const CPhenotype_Base::TSource & CPhenotype_Base::GetSource ( void  ) const

inline

Get the Source member data.

Returns

Reference to the member data.

Definition at line 307 of file Phenotype_.hpp.

References CPhenotype_Base::CanGetSource(), CPhenotype_Base::m_Source, and CSerialObject::ThrowUnassigned().

GetSource() [2/2]

const CVariation_ref_Base::C_E_Somatic_origin::TSource & CVariation_ref_Base::C_E_Somatic_origin::GetSource ( void  ) const

inline

Get the Source member data.

Returns

Reference to the member data.

Definition at line 2842 of file Variation_ref_.hpp.

References CSerialObject::ThrowUnassigned().

GetSynonyms()

const CVariation_ref_Base::TSynonyms & CVariation_ref_Base::GetSynonyms ( void  ) const

inline

Get the Synonyms member data.

Returns

Reference to the member data.

Definition at line 3019 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Synonyms.

Referenced by variation::CVariationUtil::x_AsVariation().

GetTerm()

const CPhenotype_Base::TTerm & CPhenotype_Base::GetTerm ( void  ) const

inline

Get the Term member data.

Returns

Reference to the member data.

Definition at line 354 of file Phenotype_.hpp.

References CPhenotype_Base::CanGetTerm(), CPhenotype_Base::m_Term, and CSerialObject::ThrowUnassigned().

GetTest()

const CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::TTest & CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::GetTest ( void  ) const

inline

Get the Test member data.

Returns

Reference to the member data.

Definition at line 2632 of file Variation_ref_.hpp.

References CSerialObject::ThrowUnassigned().

GetType() [1/2]

CVariation_inst_Base::TType CVariation_inst_Base::GetType ( void  ) const

inline

Get the Type member data.

Returns

Copy of the member data.

Definition at line 297 of file Variation_inst_.hpp.

References CVariation_inst_Base::CanGetType(), CVariation_inst_Base::m_Type, and CSerialObject::ThrowUnassigned().

Referenced by CGvfWriteRecord::AssignType(), variation::CVariationUtil::ChangeToDelins(), CGuiObjectInfoVariant::GetToolTip(), CVariationUtilities::GetVariationType(), NSnpGui::GetVcfType(), CVariation_ref::IsCNV(), CVariation_ref::IsDeletion(), CVariation_ref::IsDeletionInsertion(), CVariation_ref::IsEversion(), CVariation_ref::IsGain(), CVariation_ref::IsInsertion(), CVariation_ref::IsInversion(), CVariation_ref::IsLoss(), CVariation_ref::IsMicrosatellite(), CVariation_ref::IsMNP(), CVariationUtilities::IsReferenceCorrect(), CVariation_ref::IsSNV(), CVariation_ref::IsTranslocation(), CNormalizeVariant::NormalizeIdentityInstance(), CVariationNormalization_base< CVariationNormalizationRight >::ResetFullyShifted(), s_GetAltRefFromInst(), CValidateVariant::ValidateIdentityInst(), CValidateVariant::ValidateMicrosatelliteInst(), variation::CHgvsParser::x_AdjustPlacementForHgvs(), variation::CHgvsParser::x_AsHgvsInstExpression(), CVariationUtilities::x_FixAlleles(), CVcfWriter::x_GetTypeRefAlt(), variation_ref::CHgvsParser::x_InstToString(), CVariationUtilities::x_SetReference(), and CVariationNormalization_base< T >::x_Shift().

GetType() [2/2]

CVariation_ref_Base::C_Data::C_Set::TType CVariation_ref_Base::C_Data::C_Set::GetType ( void  ) const

inline

Get the Type member data.

Returns

Copy of the member data.

Definition at line 2282 of file Variation_ref_.hpp.

References CSerialObject::ThrowUnassigned().

Referenced by CVariation_ref::IsOther(), variation_ref::CVariationUtil::SetReferenceSequence(), variation_ref::CHgvsParser::x_AsHgvsExpression(), and variation::CVariationUtil::x_AsVariation().

GetValidated()

CVariation_ref_Base::TValidated CVariation_ref_Base::GetValidated ( void  ) const

inline

Get the Validated member data.

Returns

Copy of the member data.

Definition at line 3194 of file Variation_ref_.hpp.

References CVariation_ref_Base::CanGetValidated(), CVariation_ref_Base::m_Validated, and CSerialObject::ThrowUnassigned().

Referenced by CVariation_ref::GetValidated(), CVariation_ref::PostRead(), and CVariation_ref::SetValidated().

GetVariant_prop()

const CVariation_ref_Base::TVariant_prop & CVariation_ref_Base::GetVariant_prop ( void  ) const

inline

Get the Variant_prop member data.

Returns

Reference to the member data.

Definition at line 3166 of file Variation_ref_.hpp.

References CVariation_ref_Base::CanGetVariant_prop(), CVariation_ref_Base::m_Variant_prop, and CSerialObject::ThrowUnassigned().

Referenced by CVariation_ref::CanGetAllele_frequency(), CVariation_ref::CanGetAllele_origin(), CVariation_ref::CanGetAllele_state(), CVariation_ref::CanGetIs_ancestral_allele(), CVariation_ref::CanGetValidated(), CVariation_ref::GetAllele_frequency(), CVariation_ref::GetAllele_origin(), CVariation_ref::GetAllele_state(), CVariation_ref::GetIs_ancestral_allele(), CSeq_featHandler::GetLabel(), CGuiObjectInfoVariant::GetToolTip(), CVariation_ref::GetValidated(), CVariation_ref::IsSetAllele_frequency(), CVariation_ref::IsSetAllele_origin(), CVariation_ref::IsSetAllele_state(), CVariation_ref::IsSetIs_ancestral_allele(), CVariation_ref::IsSetValidated(), variation::CVariationUtil::x_AsVariation(), variation_ref::CVariationUtil::x_SetVariantProperties(), and CVcfWriter::x_WriteFeatureInfo().

GetVariation()

const CVariation_ref_Base::C_E_Consequence::TVariation & CVariation_ref_Base::C_E_Consequence::GetVariation

(

void

)

const

Get the variant data.

Returns

Reference to the data.

Definition at line 475 of file Variation_ref_.cpp.

References CVariation_ref_Base::C_E_Consequence::CheckSelected(), CVariation_ref_Base::C_E_Consequence::e_Variation, and CVariation_ref_Base::C_E_Consequence::m_object.

GetVariations()

const CVariation_ref_Base::C_Data::C_Set::TVariations & CVariation_ref_Base::C_Data::C_Set::GetVariations ( void  ) const

inline

Get the Variations member data.

Returns

Reference to the member data.

Definition at line 2322 of file Variation_ref_.hpp.

Referenced by g_ValidateVariationSeqfeat(), CGuiObjectInfoVariant::GetToolTip(), CVariationUtilities::GetVariationRefAlt(), CVariationUtilities::GetVariationType(), NSnpGui::GetVcfType(), CVariationUtilities::IsIntronicVariation(), CVariationUtilities::IsReferenceCorrect(), variation::CVariationUtil::x_AsVariation(), CVariationUtilities::x_SetReference(), CVariationNormalization_base< T >::x_Shift(), variation_ref::CHgvsParser::x_unwrap_iff_singleton(), and CVcfWriter::x_WriteFeature().

GetVersion()

CVariantProperties_Base::TVersion CVariantProperties_Base::GetVersion ( void  ) const

inline

Get the Version member data.

Returns

Copy of the member data.

Definition at line 983 of file VariantProperties_.hpp.

References CVariantProperties_Base::CanGetVersion(), CVariantProperties_Base::m_Version, and CSerialObject::ThrowUnassigned().

GetX_length()

CVariation_ref_Base::C_E_Consequence::C_Frameshift::TX_length CVariation_ref_Base::C_E_Consequence::C_Frameshift::GetX_length ( void  ) const

inline

Get the X_length member data.

Returns

Copy of the member data.

Definition at line 2545 of file Variation_ref_.hpp.

References CSerialObject::ThrowUnassigned().

GetXref()

const CPhenotype_Base::TXref & CPhenotype_Base::GetXref ( void  ) const

inline

Get the Xref member data.

Returns

Reference to the member data.

Definition at line 401 of file Phenotype_.hpp.

References CPhenotype_Base::m_Xref.

IsComplex()

bool CVariation_ref_Base::C_Data::IsComplex ( void  ) const

inline

Check if variant Complex is selected.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 2467 of file Variation_ref_.hpp.

References CVariation_ref_Base::C_Data::e_Complex, and CVariation_ref_Base::C_Data::m_choice.

Referenced by CVariation_ref::IsComplex(), and variation::CVariationUtil::x_AsVariation().

IsFrameshift()

bool CVariation_ref_Base::C_E_Consequence::IsFrameshift ( void  ) const

inline

Check if variant Frameshift is selected.

Frameshift type is defined as 'typedef C_Frameshift TFrameshift'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 2746 of file Variation_ref_.hpp.

References CVariation_ref_Base::C_Data::m_choice.

IsInstance()

bool CVariation_ref_Base::C_Data::IsInstance ( void  ) const

inline

Check if variant Instance is selected.

Instance type is defined as 'typedef CVariation_inst TInstance'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 2455 of file Variation_ref_.hpp.

References CVariation_ref_Base::C_Data::e_Instance, and CVariation_ref_Base::C_Data::m_choice.

Referenced by variation_ref::CVariationUtil::AdjustDelinsToInterval(), CGvfWriteRecord::AssignType(), variation_ref::CVariationUtil::ChangeToDelins(), variation_ref::CVariationUtil::CheckExonBoundary(), g_ValidateVariationSeqfeat(), CSeq_featHandler::GetLabel(), CGuiObjectInfoVariant::GetToolTip(), CVariationUtilities::GetVariationRefAlt(), CVariationUtilities::GetVariationType(), CVariation_ref::IsCNV(), CVariation_ref::IsDeletion(), CVariation_ref::IsDeletionInsertion(), CVariation_ref::IsEversion(), CVariation_ref::IsGain(), CVariation_ref::IsInsertion(), CVariation_ref::IsInversion(), CVariation_ref::IsLoss(), CVariation_ref::IsMicrosatellite(), CVariation_ref::IsMNP(), CVariationUtilities::IsReferenceCorrect(), CVariation_ref::IsSNV(), CVariation_ref::IsTranslocation(), variation_ref::CVariationUtil::PrecursorToProt(), variation_ref::CVariationUtil::s_AddIntronicOffsets(), s_GetLiteralLength(), variation_ref::CVariationUtil::s_Remap(), variation_ref::CVariationUtil::s_ResolveIntronicOffsets(), variation_ref::CVariationUtil::SetReferenceSequence(), variation_ref::CVariationUtil::SetVariantProperties(), variation::CVariationUtil::x_AsVariation(), NSNPVariationHelper::x_CommonConvertFeat(), CVariationUtilities::x_FixAlleles(), variation_ref::CVariationUtil::x_ProtToPrecursor(), CVariationUtilities::x_SetReference(), CVariationNormalization_base< T >::x_Shift(), CModifySeqId::x_UpdateVariation(), and CReportTrim::x_UpdateVariation().

IsLiteral()

bool CDelta_item_Base::C_Seq::IsLiteral ( void  ) const

inline

Check if variant Literal is selected.

Literal type is defined as 'typedef CSeq_literal TLiteral'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 489 of file Delta_item_.hpp.

Referenced by variation::CVariationUtil::FlipStrand(), s_ContainsSeqDataIupacna(), variation::CVariationUtil::TranslateNAtoAA(), CFeatureItem::x_AddQualsVariation(), variation_ref::CHgvsParser::x_GetInstData(), variation_ref::CHgvsParser::x_GetInstLength(), variation::CHgvsParser::x_GetInstLength(), and variation_ref::CVariationUtil::x_SetVariantProperties().

IsLoc()

bool CDelta_item_Base::C_Seq::IsLoc ( void  ) const

inline

Check if variant Loc is selected.

Loc type is defined as 'typedef CSeq_loc TLoc'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 495 of file Delta_item_.hpp.

Referenced by variation::CVariationUtil::ChangeToDelins(), variation_ref::CVariationUtil::ChangeToDelins(), variation::CVariationUtil::FlipStrand(), variation_ref::CVariationUtil::s_Remap(), variation_ref::CHgvsParser::x_GetInstData(), variation_ref::CHgvsParser::x_GetInstLength(), and variation::CHgvsParser::x_GetInstLength().

IsLoss_of_heterozygosity()

bool CVariation_ref_Base::C_E_Consequence::IsLoss_of_heterozygosity ( void  ) const

inline

Check if variant Loss_of_heterozygosity is selected.

Loss_of_heterozygosity type is defined as 'typedef C_Loss_of_heterozygosity TLoss_of_heterozygosity'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 2752 of file Variation_ref_.hpp.

References CVariation_ref_Base::C_Data::m_choice.

IsNote() [1/2]

bool CVariation_ref_Base::C_Data::IsNote ( void  ) const

inline

Check if variant Note is selected.

Note type is defined as 'typedef string TNote'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 2423 of file Variation_ref_.hpp.

References CVariation_ref_Base::C_Data::e_Note, and CVariation_ref_Base::C_Data::m_choice.

Referenced by variation::CVariationUtil::x_AsVariation().

IsNote() [2/2]

bool CVariation_ref_Base::C_E_Consequence::IsNote ( void  ) const

inline

Check if variant Note is selected.

Note type is defined as 'typedef string TNote'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 2720 of file Variation_ref_.hpp.

References CVariation_ref_Base::C_Data::e_Note, and CVariation_ref_Base::C_Data::m_choice.

IsSet()

bool CVariation_ref_Base::C_Data::IsSet ( void  ) const

inline

Check if variant Set is selected.

Set type is defined as 'typedef C_Set TSet'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 2461 of file Variation_ref_.hpp.

References CVariation_ref_Base::C_Data::e_Set, and CVariation_ref_Base::C_Data::m_choice.

Referenced by variation_ref::CVariationUtil::AdjustDelinsToInterval(), variation_ref::CVariationUtil::ChangeToDelins(), g_ValidateVariationSeqfeat(), CGuiObjectInfoVariant::GetToolTip(), NSnpGui::GetVcfType(), CVariation_ref::IsOther(), CVariationUtilities::IsReferenceCorrect(), variation_ref::RepackageAssertedSequence(), variation_ref::CVariationUtil::s_AddIntronicOffsets(), variation_ref::CVariationUtil::s_FactorOutLocsInPlace(), variation_ref::CVariationUtil::s_PropagateLocsInPlace(), variation_ref::CVariationUtil::s_Remap(), variation_ref::CVariationUtil::s_ResolveIntronicOffsets(), variation_ref::CVariationUtil::SetReferenceSequence(), variation::CVariationUtil::x_AsVariation(), variation_ref::CVariationUtil::x_ProtToPrecursor(), CVariationUtilities::x_SetReference(), CVariationNormalization_base< T >::x_Shift(), variation_ref::CHgvsParser::x_unwrap_iff_singleton(), CModifySeqId::x_UpdateVariation(), and CReportTrim::x_UpdateVariation().

IsSetAction()

bool CDelta_item_Base::IsSetAction ( void  ) const

inline

Check if a value has been assigned to Action data member.

Data member Action is optional with default eAction_morph; its type is defined as 'typedef int TAction'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 602 of file Delta_item_.hpp.

References CDelta_item_Base::m_set_State.

Referenced by variation::CVariationUtil::ChangeToDelins(), variation_ref::CVariationUtil::ChangeToDelins(), variation_ref::CVariationUtil::CheckExonBoundary(), s_ContainsOffset(), variation::CVariationUtil::s_IsInstStrandFlippable(), variation_ref::CVariationUtil::s_ResolveIntronicOffsets(), CDelta_item_Base::SetAction(), variation_ref::CVariationUtil::SetReferenceSequence(), and variation_ref::CVariationUtil::x_SetVariantProperties().

IsSetAllele_frequency() [1/3]

bool CPopulation_data_Base::IsSetAllele_frequency ( void  ) const

inline

Check if a value has been assigned to Allele_frequency data member.

Data member Allele_frequency is optional; its type is defined as 'typedef double TAllele_frequency'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 537 of file Population_data_.hpp.

References CPopulation_data_Base::m_set_State.

Referenced by CPopulation_data_Base::CanGetAllele_frequency(), and CPopulation_data_Base::SetAllele_frequency().

IsSetAllele_frequency() [2/3]

bool CVariantProperties_Base::IsSetAllele_frequency ( void  ) const

inline

NOTE: 'allele-frequency' here refers to the minor allele frequency of the default population Check if a value has been assigned to Allele_frequency data member.

Data member Allele_frequency is optional; its type is defined as 'typedef double TAllele_frequency'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1600 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::CanGetAllele_frequency(), CVariation_ref::IsSetAllele_frequency(), CVariantProperties_Base::SetAllele_frequency(), and CVcfWriter::x_WriteFeatureInfo().

IsSetAllele_frequency() [3/3]

bool CVariation_ref_Base::IsSetAllele_frequency ( void  ) const

inline

NOTE: 'allele-frequency' here refers to the minor allele frequency of the default population DEPRECATED: new field = VariantProperties.allele-frequency Check if a value has been assigned to Allele_frequency data member.

Data member Allele_frequency is optional; its type is defined as 'typedef double TAllele_frequency'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3341 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

Referenced by CVariation_ref_Base::CanGetAllele_frequency(), CVariation_ref::IsSetAllele_frequency(), CVariation_ref::PostRead(), CVariation_ref::SetAllele_frequency(), and CVariation_ref_Base::SetAllele_frequency().

IsSetAllele_origin() [1/2]

bool CVariantProperties_Base::IsSetAllele_origin ( void  ) const

inline

Check if a value has been assigned to Allele_origin data member.

Data member Allele_origin is optional; its type is defined as 'typedef int TAllele_origin'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1506 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::CanGetAllele_origin(), CSeq_featHandler::GetLabel(), CGuiObjectInfoVariant::GetToolTip(), CVariation_ref::IsSetAllele_origin(), and CVariantProperties_Base::SetAllele_origin().

IsSetAllele_origin() [2/2]

bool CVariation_ref_Base::IsSetAllele_origin ( void  ) const

inline

Check if a value has been assigned to Allele_origin data member.

Data member Allele_origin is optional; its type is defined as 'typedef int TAllele_origin'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3247 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

Referenced by CVariation_ref_Base::CanGetAllele_origin(), CVariation_ref::IsSetAllele_origin(), CVariation_ref::PostRead(), CVariation_ref::SetAllele_origin(), and CVariation_ref_Base::SetAllele_origin().

IsSetAllele_state() [1/2]

bool CVariantProperties_Base::IsSetAllele_state ( void  ) const

inline

Check if a value has been assigned to Allele_state data member.

Data member Allele_state is optional; its type is defined as 'typedef int TAllele_state'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1553 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::CanGetAllele_state(), CVariation_ref::IsSetAllele_state(), and CVariantProperties_Base::SetAllele_state().

IsSetAllele_state() [2/2]

bool CVariation_ref_Base::IsSetAllele_state ( void  ) const

inline

Check if a value has been assigned to Allele_state data member.

Data member Allele_state is optional; its type is defined as 'typedef int TAllele_state'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3294 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

Referenced by CVariation_ref_Base::CanGetAllele_state(), CVariation_ref::IsSetAllele_state(), CVariation_ref::PostRead(), CVariation_ref::SetAllele_state(), and CVariation_ref_Base::SetAllele_state().

IsSetChromosomes_tested()

bool CPopulation_data_Base::IsSetChromosomes_tested ( void  ) const

inline

Check if a value has been assigned to Chromosomes_tested data member.

Data member Chromosomes_tested is optional; its type is defined as 'typedef int TChromosomes_tested'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 465 of file Population_data_.hpp.

References CPopulation_data_Base::m_set_State.

Referenced by CPopulation_data_Base::CanGetChromosomes_tested(), and CPopulation_data_Base::SetChromosomes_tested().

IsSetClinical_significance()

bool CPhenotype_Base::IsSetClinical_significance ( void  ) const

inline

Check if a value has been assigned to Clinical_significance data member.

Data member Clinical_significance is optional; its type is defined as 'typedef int TClinical_significance'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 414 of file Phenotype_.hpp.

References CPhenotype_Base::m_set_State.

Referenced by CPhenotype_Base::CanGetClinical_significance(), and CPhenotype_Base::SetClinical_significance().

IsSetClinical_test()

bool CVariation_ref_Base::IsSetClinical_test ( void  ) const

inline

link-outs to GeneTests database DEPRECATED - do not use Check if a value has been assigned to Clinical_test data member.

Data member Clinical_test is optional; its type is defined as 'typedef list< CRef< CDbtag > > TClinical_test'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3222 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

Referenced by CVariation_ref::PostRead().

IsSetCondition()

bool CVariation_ref_Base::C_E_Somatic_origin::IsSetCondition ( void  ) const

inline

Check if a value has been assigned to Condition data member.

Data member Condition is optional; its type is defined as 'typedef C_Condition TCondition'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2851 of file Variation_ref_.hpp.

IsSetConfidence()

bool CVariantProperties_Base::IsSetConfidence ( void  ) const

inline

Check if a value has been assigned to Confidence data member.

Data member Confidence is optional; its type is defined as 'typedef int TConfidence'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1412 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::CanGetConfidence(), and CVariantProperties_Base::SetConfidence().

IsSetConsequence()

bool CVariation_ref_Base::IsSetConsequence ( void  ) const

inline

Check if a value has been assigned to Consequence data member.

Data member Consequence is optional; its type is defined as 'typedef list< CRef< C_E_Consequence > > TConsequence'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3486 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

Referenced by CGvfWriteRecord::AssignType(), variation::CVariationUtil::x_AsVariation(), CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_E1804_ETC(), CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation1805_ETC(), CModifySeqId::x_UpdateVariation(), and CReportTrim::x_UpdateVariation().

IsSetData()

bool CVariation_ref_Base::IsSetData ( void  ) const

inline

Check if a value has been assigned to Data data member.

Data member Data is mandatory; its type is defined as 'typedef C_Data TData'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3456 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Data, and CRef< C, Locker >::NotEmpty().

Referenced by g_ValidateVariationSeqfeat(), CGuiObjectInfoVariant::GetToolTip(), CVariationUtilities::GetVariationRefAlt(), CVariationUtilities::GetVariationType(), NSnpGui::GetVcfType(), CVariationUtilities::IsIntronicVariation(), CVariationUtilities::IsReferenceCorrect(), CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_E1804_ETC(), CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation1805_ETC(), CVariationUtilities::x_FixAlleles(), CVariationUtilities::x_SetReference(), CVariationNormalization_base< T >::x_Shift(), CModifySeqId::x_UpdateVariation(), and CReportTrim::x_UpdateVariation().

IsSetDelta()

bool CVariation_inst_Base::IsSetDelta ( void  ) const

inline

Sequence that replaces the location, in biological order.

Check if a value has been assigned to Delta data member.

Data member Delta is mandatory; its type is defined as 'typedef list< CRef< CDelta_item > > TDelta'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 325 of file Variation_inst_.hpp.

References CVariation_inst_Base::m_set_State.

Referenced by variation::CVariationUtil::FlipStrand(), CSeq_featHandler::GetLabel(), CGuiObjectInfoVariant::GetToolTip(), CPostProcessUtils::HasIntronOffset(), CVariation_ref::IsGain(), CVariation_ref::IsLoss(), CNormalizeVariant::NormalizeIdentityInstance(), s_ContainsOffset(), s_GetLiteralLength(), CValidateVariant::ValidateIdentityInst(), CValidateVariant::ValidateMicrosatelliteInst(), CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_ETC(), CVcfWriter::x_GetTypeRefAlt(), CVariationNormalization_base< T >::x_Shift(), CModifySeqId::x_UpdateVariation(), and CReportTrim::x_UpdateVariation().

IsSetDescription() [1/2]

bool CVariation_ref_Base::C_E_Somatic_origin::C_Condition::IsSetDescription ( void  ) const

inline

Check if a value has been assigned to Description data member.

Data member Description is optional; its type is defined as 'typedef string TDescription'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2758 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

IsSetDescription() [2/2]

bool CVariation_ref_Base::IsSetDescription ( void  ) const

inline

tag for comment and descriptions Check if a value has been assigned to Description data member.

Data member Description is optional; its type is defined as 'typedef string TDescription'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3032 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

Referenced by CVariation_ref_Base::C_E_Somatic_origin::C_Condition::CanGetDescription(), CVariation_ref_Base::CanGetDescription(), CVariation_ref_Base::C_E_Somatic_origin::C_Condition::SetDescription(), CVariation_ref_Base::SetDescription(), and variation::CVariationUtil::x_AsVariation().

IsSetEffect()

bool CVariantProperties_Base::IsSetEffect ( void  ) const

inline

Check if a value has been assigned to Effect data member.

Data member Effect is optional; its type is defined as 'typedef int TEffect'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1105 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::CanGetEffect(), CVariantProperties_Base::SetEffect(), variation_ref::CVariationUtil::x_SetVariantProperties(), and CVcfWriter::x_WriteFeatureInfo().

IsSetExt()

bool CVariation_ref_Base::IsSetExt ( void  ) const

inline

DEPRECATED - do not use; use Seq-feat.exts instead Check if a value has been assigned to Ext data member.

Data member Ext is optional; its type is defined as 'typedef CUser_object TExt'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3557 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Ext.

Referenced by CVariation_ref_Base::CanGetExt(), and CVariation_ref::IsSetExt().

IsSetExt_locs()

bool CVariation_ref_Base::IsSetExt_locs ( void  ) const

inline

reference other locs, e.g.

mapped source DEPRECATED - do not use Check if a value has been assigned to Ext_locs data member.

Data member Ext_locs is optional; its type is defined as 'typedef list< CRef< CExt_loc > > TExt_locs'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3532 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

Referenced by CVariation_ref::IsSetExt_locs().

IsSetFlags()

bool CPopulation_data_Base::IsSetFlags ( void  ) const

inline

Check if a value has been assigned to Flags data member.

Data member Flags is optional; its type is defined as 'typedef int TFlags'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 584 of file Population_data_.hpp.

References CPopulation_data_Base::m_set_State.

Referenced by CPopulation_data_Base::CanGetFlags(), and CPopulation_data_Base::SetFlags().

IsSetFrequency_based_validation()

bool CVariantProperties_Base::IsSetFrequency_based_validation ( void  ) const

inline

Check if a value has been assigned to Frequency_based_validation data member.

Data member Frequency_based_validation is optional; its type is defined as 'typedef int TFrequency_based_validation'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1246 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::CanGetFrequency_based_validation(), CVariantProperties_Base::SetFrequency_based_validation(), and CVcfWriter::x_WriteFeatureInfo().

IsSetGene_location()

bool CVariantProperties_Base::IsSetGene_location ( void  ) const

inline

Check if a value has been assigned to Gene_location data member.

Data member Gene_location is optional; its type is defined as 'typedef int TGene_location'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1058 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::CanGetGene_location(), CVariantProperties_Base::SetGene_location(), variation_ref::CVariationUtil::SetVariantProperties(), variation_ref::CVariationUtil::x_SetVariantPropertiesForIntronic(), and CVcfWriter::x_WriteFeatureInfo().

IsSetGenotype()

bool CVariantProperties_Base::IsSetGenotype ( void  ) const

inline

Check if a value has been assigned to Genotype data member.

Data member Genotype is optional; its type is defined as 'typedef int TGenotype'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1293 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::CanGetGenotype(), CVariantProperties_Base::SetGenotype(), and CVcfWriter::x_WriteFeatureInfo().

IsSetGenotype_frequency()

bool CPopulation_data_Base::IsSetGenotype_frequency ( void  ) const

inline

Check if a value has been assigned to Genotype_frequency data member.

Data member Genotype_frequency is optional; its type is defined as 'typedef double TGenotype_frequency'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 418 of file Population_data_.hpp.

References CPopulation_data_Base::m_set_State.

Referenced by CPopulation_data_Base::CanGetGenotype_frequency(), and CPopulation_data_Base::SetGenotype_frequency().

IsSetId() [1/2]

bool CExt_loc_Base::IsSetId ( void  ) const

inline

Check if a value has been assigned to Id data member.

Data member Id is mandatory; its type is defined as 'typedef CObject_id TId'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 199 of file Ext_loc_.hpp.

References CExt_loc_Base::m_Id.

IsSetId() [2/2]

bool CVariation_ref_Base::IsSetId ( void  ) const

inline

ids (i.e., SNP rsid / ssid, dbVar nsv/nssv) expected values include 'dbSNP|rs12334', 'dbSNP|ss12345', 'dbVar|nsv1'

we relate three kinds of IDs here:

• our current object's id
• the id of this object's parent, if it exists
• the sample ID that this item originates from Check if a value has been assigned to Id data member.

Data member Id is optional; its type is defined as 'typedef CDbtag TId'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2872 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Id.

Referenced by CVariation_ref_Base::CanGetId(), CSeq_featHandler::GetLabel(), CGuiObjectInfoVariant::GetToolTip(), s_GetVariationLabel(), CGvfWriteRecord::x_AssignAttributeID(), variation::CVariationUtil::x_AsVariation(), CVcfWriter::x_WriteFeatureId(), and CVcfWriter::x_WriteFeatureInfo().

IsSetIs_ancestral_allele() [1/2]

bool CVariantProperties_Base::IsSetIs_ancestral_allele ( void  ) const

inline

is this variant the ancestral allele? Check if a value has been assigned to Is_ancestral_allele data member.

Data member Is_ancestral_allele is optional; its type is defined as 'typedef bool TIs_ancestral_allele'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1647 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::CanGetIs_ancestral_allele(), CVariation_ref::IsSetIs_ancestral_allele(), and CVariantProperties_Base::SetIs_ancestral_allele().

IsSetIs_ancestral_allele() [2/2]

bool CVariation_ref_Base::IsSetIs_ancestral_allele ( void  ) const

inline

is this variant the ancestral allele? DEPRECATED: new field = VariantProperties.is-ancestral-allele Check if a value has been assigned to Is_ancestral_allele data member.

Data member Is_ancestral_allele is optional; its type is defined as 'typedef bool TIs_ancestral_allele'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3388 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

Referenced by CVariation_ref_Base::CanGetIs_ancestral_allele(), CVariation_ref::IsSetIs_ancestral_allele(), CVariation_ref::PostRead(), CVariation_ref::SetIs_ancestral_allele(), and CVariation_ref_Base::SetIs_ancestral_allele().

IsSetLocation() [1/2]

bool CExt_loc_Base::IsSetLocation ( void  ) const

inline

Check if a value has been assigned to Location data member.

Data member Location is mandatory; its type is defined as 'typedef CSeq_loc TLocation'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 229 of file Ext_loc_.hpp.

References CExt_loc_Base::m_Location.

IsSetLocation() [2/2]

bool CVariation_ref_Base::IsSetLocation ( void  ) const

inline

Observed location, if different from the parent set or feature.location.

DEPRECATED - do not use Check if a value has been assigned to Location data member.

Data member Location is optional; its type is defined as 'typedef CSeq_loc TLocation'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3511 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Location.

Referenced by CVariation_ref_Base::CanGetLocation(), and CVariation_ref::IsSetLocation().

IsSetMap_weight()

bool CVariantProperties_Base::IsSetMap_weight ( void  ) const

inline

Check if a value has been assigned to Map_weight data member.

Data member Map_weight is optional; its type is defined as 'typedef int TMap_weight'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1199 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::CanGetMap_weight(), and CVariantProperties_Base::SetMap_weight().

IsSetMapping()

bool CVariantProperties_Base::IsSetMapping ( void  ) const

inline

Check if a value has been assigned to Mapping data member.

Data member Mapping is optional; its type is defined as 'typedef int TMapping'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1152 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::CanGetMapping(), and CVariantProperties_Base::SetMapping().

IsSetMethod()

bool CVariation_ref_Base::IsSetMethod ( void  ) const

inline

Check if a value has been assigned to Method data member.

Data member Method is optional; its type is defined as 'typedef list< int > TMethod'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3104 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

Referenced by variation::CVariationUtil::x_AsVariation().

IsSetMultiplier()

bool CDelta_item_Base::IsSetMultiplier ( void  ) const

inline

Multiplier allows representing a tandem, e.g.

ATATAT as AT*3 This allows describing CNV/SSR where delta=self with a multiplier which specifies the count of the repeat unit. assumed 1 if not specified. Check if a value has been assigned to Multiplier data member.

Data member Multiplier is optional; its type is defined as 'typedef int TMultiplier'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 534 of file Delta_item_.hpp.

References CDelta_item_Base::m_set_State.

Referenced by CDelta_item_Base::CanGetMultiplier(), variation::CVariationUtil::ChangeToDelins(), variation_ref::CVariationUtil::ChangeToDelins(), variation_ref::CVariationUtil::s_ResolveIntronicOffsets(), CDelta_item_Base::SetMultiplier(), variation_ref::CHgvsParser::x_GetInstData(), variation_ref::CHgvsParser::x_GetInstLength(), and variation::CHgvsParser::x_GetInstLength().

IsSetMultiplier_fuzz()

bool CDelta_item_Base::IsSetMultiplier_fuzz ( void  ) const

inline

Check if a value has been assigned to Multiplier_fuzz data member.

Data member Multiplier_fuzz is optional; its type is defined as 'typedef CInt_fuzz TMultiplier_fuzz'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 581 of file Delta_item_.hpp.

References CDelta_item_Base::m_Multiplier_fuzz.

Referenced by CDelta_item_Base::CanGetMultiplier_fuzz(), variation::CVariationUtil::ChangeToDelins(), and variation_ref::CVariationUtil::ChangeToDelins().

IsSetName() [1/2]

bool CVariation_ref_Base::C_Data::C_Set::IsSetName ( void  ) const

inline

Check if a value has been assigned to Name data member.

Data member Name is optional; its type is defined as 'typedef string TName'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2335 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

Referenced by variation::CVariationUtil::x_AsVariation().

IsSetName() [2/2]

bool CVariation_ref_Base::IsSetName ( void  ) const

inline

names and synonyms some variants have well-known canonical names and possible accepted synonyms Check if a value has been assigned to Name data member.

Data member Name is optional; its type is defined as 'typedef string TName'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2960 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

Referenced by CVariation_ref_Base::C_Data::C_Set::CanGetName(), CVariation_ref_Base::CanGetName(), s_GetVariationLabel(), CVariation_ref_Base::C_Data::C_Set::SetName(), CVariation_ref_Base::SetName(), CGvfWriteRecord::x_AssignAttributeName(), and variation::CVariationUtil::x_AsVariation().

IsSetObject_id()

bool CVariation_ref_Base::C_E_Somatic_origin::C_Condition::IsSetObject_id ( void  ) const

inline

reference to BioTerm / other descriptive database Check if a value has been assigned to Object_id data member.

Data member Object_id is optional; its type is defined as 'typedef list< CRef< CDbtag > > TObject_id'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2805 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

IsSetObservation()

bool CVariation_inst_Base::IsSetObservation ( void  ) const

inline

Check if a value has been assigned to Observation data member.

Data member Observation is optional; its type is defined as 'typedef int TObservation'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 350 of file Variation_inst_.hpp.

References CVariation_inst_Base::m_set_State.

Referenced by variation::CVariationUtil::AttachProteinConsequences(), variation::CVariationUtil::AttachSeq(), CVariation_inst_Base::CanGetObservation(), variation::CVariationUtil::s_FindAssertedLiteral(), CVariation_inst_Base::SetObservation(), variation_ref::CVariationUtil::SetReferenceSequence(), variation_ref::CVariationUtil::SetVariantProperties(), variation::CVariationUtil::x_InferNAfromAA(), and variation_ref::CVariationUtil::x_ProtToPrecursor().

IsSetOther_ids()

bool CVariation_ref_Base::IsSetOther_ids ( void  ) const

inline

Check if a value has been assigned to Other_ids data member.

Data member Other_ids is optional; its type is defined as 'typedef list< CRef< CDbtag > > TOther_ids'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2935 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

Referenced by variation::CVariationUtil::x_AsVariation(), and CVcfWriter::x_WriteFeatureInfo().

IsSetOther_validation()

bool CVariantProperties_Base::IsSetOther_validation ( void  ) const

inline

has this variant been validated? While a boolean flag offers no subtle distinctions of validation methods, occasionally it is only known as a single boolean value NOTE: this flag is redundant and should be omitted if more comprehensive validation information is present Check if a value has been assigned to Other_validation data member.

Data member Other_validation is optional; its type is defined as 'typedef bool TOther_validation'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1459 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::CanGetOther_validation(), CSeq_featHandler::GetLabel(), CGuiObjectInfoVariant::GetToolTip(), CVariation_ref::IsSetValidated(), and CVariantProperties_Base::SetOther_validation().

IsSetParent_id()

bool CVariation_ref_Base::IsSetParent_id ( void  ) const

inline

Check if a value has been assigned to Parent_id data member.

Data member Parent_id is optional; its type is defined as 'typedef CDbtag TParent_id'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2893 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Parent_id.

Referenced by CVariation_ref_Base::CanGetParent_id(), CGvfWriteRecord::x_AssignAttributeParent(), and variation::CVariationUtil::x_AsVariation().

IsSetPhase()

bool CVariation_ref_Base::C_E_Consequence::C_Frameshift::IsSetPhase ( void  ) const

inline

Check if a value has been assigned to Phase data member.

Data member Phase is optional; its type is defined as 'typedef int TPhase'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2479 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

IsSetPhenotype()

bool CVariation_ref_Base::IsSetPhenotype ( void  ) const

inline

phenotype Check if a value has been assigned to Phenotype data member.

Data member Phenotype is optional; its type is defined as 'typedef list< CRef< CPhenotype > > TPhenotype'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3079 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

Referenced by variation::CVariationUtil::x_AsVariation().

IsSetPopulation()

bool CPopulation_data_Base::IsSetPopulation ( void  ) const

inline

assayed population (e.g.

HAPMAP-CEU) Check if a value has been assigned to Population data member.

Data member Population is mandatory; its type is defined as 'typedef string TPopulation'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 371 of file Population_data_.hpp.

References CPopulation_data_Base::m_set_State.

Referenced by CPopulation_data_Base::CanGetPopulation(), and CPopulation_data_Base::SetPopulation().

IsSetPopulation_data()

bool CVariation_ref_Base::IsSetPopulation_data ( void  ) const

inline

Note about SNP representation and pretinent fields: allele-frequency, population, quality-codes: The case of multiple alleles for a SNP would be described by parent-feature of type Variation-set.diff-alleles, where the child features of type Variation-inst, all at the same location, would describe individual alleles.

population data DEPRECATED - do not use Check if a value has been assigned to Population_data data member.

Data member Population_data is optional; its type is defined as 'typedef list< CRef< CPopulation_data > > TPopulation_data'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3129 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

Referenced by CVariation_ref::PostRead().

IsSetProject_data()

bool CVariantProperties_Base::IsSetProject_data ( void  ) const

inline

project IDs are IDs from BioProjects in order to report information about project relationships, we require projects to be registered This field in many ways duplicates dbxrefs; however, the intention of this field is to more adequately reflect ownership and data source

11/9/2010: DO NOT USE This field was changed in the spec in a breaking way; using it will break clients. We are officially suppressing / abandoning this field. Clients who need to use this should instead place the data in Seq-feat.dbxref, using the db name 'BioProject' Check if a value has been assigned to Project_data data member.

Data member Project_data is optional; its type is defined as 'typedef list< int > TProject_data'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1340 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_set_State.

IsSetPub()

bool CVariation_ref_Base::IsSetPub ( void  ) const

inline

publication support.

Note: made this pub instead of pub-equiv, since Pub can be pub-equiv and pub-equiv is a set of pubs, but it looks like Pub is more often used as top-level container DEPRECATED - do not use; use Seq-feat.dbxref instead Check if a value has been assigned to Pub data member.

Data member Pub is optional; its type is defined as 'typedef CPub TPub'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3435 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Pub.

Referenced by CVariation_ref_Base::CanGetPub(), and CVariation_ref::PostRead().

IsSetQuality_check()

bool CVariantProperties_Base::IsSetQuality_check ( void  ) const

inline

Check if a value has been assigned to Quality_check data member.

Data member Quality_check is optional; its type is defined as 'typedef int TQuality_check'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1365 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::CanGetQuality_check(), CVariantProperties_Base::SetQuality_check(), and CVcfWriter::x_WriteFeatureInfo().

IsSetReference()

bool CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::IsSetReference ( void  ) const

inline

In germline comparison, it will be reference genome assembly (default) or reference/normal population.

In somatic mutation, it will be a name of the normal tissue. Check if a value has been assigned to Reference data member.

Data member Reference is optional; its type is defined as 'typedef string TReference'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2573 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

IsSetResource_link()

bool CVariantProperties_Base::IsSetResource_link ( void  ) const

inline

Check if a value has been assigned to Resource_link data member.

Data member Resource_link is optional; its type is defined as 'typedef int TResource_link'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1011 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::CanGetResource_link(), CVariantProperties_Base::SetResource_link(), and CVcfWriter::x_WriteFeatureInfo().

IsSetSample_id()

bool CVariation_ref_Base::IsSetSample_id ( void  ) const

inline

Check if a value has been assigned to Sample_id data member.

Data member Sample_id is optional; its type is defined as 'typedef CObject_id TSample_id'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2914 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Sample_id.

Referenced by CVariation_ref_Base::CanGetSample_id(), and variation::CVariationUtil::x_AsVariation().

IsSetSample_ids()

bool CPopulation_data_Base::IsSetSample_ids ( void  ) const

inline

Check if a value has been assigned to Sample_ids data member.

Data member Sample_ids is optional; its type is defined as 'typedef list< CRef< CObject_id > > TSample_ids'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 512 of file Population_data_.hpp.

References CPopulation_data_Base::m_set_State.

IsSetSeq()

bool CDelta_item_Base::IsSetSeq ( void  ) const

inline

Check if a value has been assigned to Seq data member.

Data member Seq is optional; its type is defined as 'typedef C_Seq TSeq'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 513 of file Delta_item_.hpp.

References CDelta_item_Base::m_Seq.

Referenced by CDelta_item_Base::CanGetSeq(), variation::CVariationUtil::FlipStrand(), s_ContainsSeqDataIupacna(), variation_ref::CVariationUtil::s_Remap(), and CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_delta_E_E_ETC().

IsSetSomatic_origin()

bool CVariation_ref_Base::IsSetSomatic_origin ( void  ) const

inline

Check if a value has been assigned to Somatic_origin data member.

Data member Somatic_origin is optional; its type is defined as 'typedef list< CRef< C_E_Somatic_origin > > TSomatic_origin'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3578 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

Referenced by variation::CVariationUtil::x_AsVariation(), CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_E1804_ETC(), and CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation1805_ETC().

IsSetSource() [1/2]

bool CPhenotype_Base::IsSetSource ( void  ) const

inline

Check if a value has been assigned to Source data member.

Data member Source is optional; its type is defined as 'typedef string TSource'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 295 of file Phenotype_.hpp.

References CPhenotype_Base::m_set_State.

Referenced by CPhenotype_Base::CanGetSource(), and CPhenotype_Base::SetSource().

IsSetSource() [2/2]

bool CVariation_ref_Base::C_E_Somatic_origin::IsSetSource ( void  ) const

inline

description of the somatic origin itself Check if a value has been assigned to Source data member.

Data member Source is optional; its type is defined as 'typedef CSubSource TSource'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2830 of file Variation_ref_.hpp.

IsSetSynonyms()

bool CVariation_ref_Base::IsSetSynonyms ( void  ) const

inline

Check if a value has been assigned to Synonyms data member.

Data member Synonyms is optional; its type is defined as 'typedef list< string > TSynonyms'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3007 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

Referenced by variation::CVariationUtil::x_AsVariation().

IsSetTerm()

bool CPhenotype_Base::IsSetTerm ( void  ) const

inline

Check if a value has been assigned to Term data member.

Data member Term is optional; its type is defined as 'typedef string TTerm'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 342 of file Phenotype_.hpp.

References CPhenotype_Base::m_set_State.

Referenced by CPhenotype_Base::CanGetTerm(), and CPhenotype_Base::SetTerm().

IsSetTest()

bool CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::IsSetTest ( void  ) const

inline

Name of the testing subject type or the testing tissue.

Check if a value has been assigned to Test data member.

Data member Test is optional; its type is defined as 'typedef string TTest'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2620 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

IsSetType() [1/2]

bool CVariation_inst_Base::IsSetType ( void  ) const

inline

Check if a value has been assigned to Type data member.

Data member Type is mandatory; its type is defined as 'typedef int TType'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 278 of file Variation_inst_.hpp.

References CVariation_inst_Base::m_set_State.

Referenced by CVariation_inst_Base::CanGetType(), CVariation_ref::IsCNV(), CVariation_ref::IsDeletion(), CVariation_ref::IsDeletionInsertion(), CVariation_ref::IsEversion(), CVariation_ref::IsGain(), CVariation_ref::IsInsertion(), CVariation_ref::IsInversion(), CVariation_ref::IsLoss(), CVariation_ref::IsMicrosatellite(), CVariation_ref::IsMNP(), CVariation_ref::IsSNV(), CVariation_ref::IsTranslocation(), CVariation_inst_Base::SetType(), CValidateVariant::ValidateIdentityInst(), and CValidateVariant::ValidateMicrosatelliteInst().

IsSetType() [2/2]

bool CVariation_ref_Base::C_Data::C_Set::IsSetType ( void  ) const

inline

Check if a value has been assigned to Type data member.

Data member Type is mandatory; its type is defined as 'typedef int TType'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2263 of file Variation_ref_.hpp.

References CVariation_ref_Base::C_Data::C_Set::m_set_State.

IsSetValidated()

bool CVariation_ref_Base::IsSetValidated ( void  ) const

inline

has this variant been validated? DEPRECATED: new field = VariantProperties.other-validation Check if a value has been assigned to Validated data member.

Data member Validated is optional; its type is defined as 'typedef bool TValidated'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3175 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

Referenced by CVariation_ref_Base::CanGetValidated(), CVariation_ref::IsSetValidated(), CVariation_ref::PostRead(), CVariation_ref::SetValidated(), and CVariation_ref_Base::SetValidated().

IsSetVariant_prop()

bool CVariation_ref_Base::IsSetVariant_prop ( void  ) const

inline

variant properties bit fields Check if a value has been assigned to Variant_prop data member.

Data member Variant_prop is optional; its type is defined as 'typedef CVariantProperties TVariant_prop'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3154 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Variant_prop.

Referenced by CVariation_ref_Base::CanGetVariant_prop(), CVariation_ref::GetAllele_frequency(), CVariation_ref::GetAllele_origin(), CVariation_ref::GetAllele_state(), CVariation_ref::GetIs_ancestral_allele(), CSeq_featHandler::GetLabel(), CGuiObjectInfoVariant::GetToolTip(), CVariation_ref::GetValidated(), CVariation_ref::IsSetAllele_frequency(), CVariation_ref::IsSetAllele_origin(), CVariation_ref::IsSetAllele_state(), CVariation_ref::IsSetIs_ancestral_allele(), CVariation_ref::IsSetValidated(), CVariation_ref::ResetAllele_frequency(), CVariation_ref::ResetAllele_origin(), CVariation_ref::ResetAllele_state(), CVariation_ref::ResetIs_ancestral_allele(), CVariation_ref::ResetValidated(), variation::CVariationUtil::x_AsVariation(), and CVcfWriter::x_WriteFeatureInfo().

IsSetVariations()

bool CVariation_ref_Base::C_Data::C_Set::IsSetVariations ( void  ) const

inline

Check if a value has been assigned to Variations data member.

Data member Variations is mandatory; its type is defined as 'typedef list< CRef< CVariation_ref > > TVariations'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2310 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

Referenced by CGuiObjectInfoVariant::GetToolTip(), NSnpGui::GetVcfType(), CVariationUtilities::IsReferenceCorrect(), CVariationUtilities::x_SetReference(), CModifySeqId::x_UpdateVariation(), and CReportTrim::x_UpdateVariation().

IsSetVersion()

bool CVariantProperties_Base::IsSetVersion ( void  ) const

inline

Check if a value has been assigned to Version data member.

Data member Version is mandatory; its type is defined as 'typedef int TVersion'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 964 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::CanGetVersion(), variation_ref::CVariationUtil::SetVariantProperties(), CVariantProperties_Base::SetVersion(), and variation_ref::CVariationUtil::x_SetVariantProperties().

IsSetX_length()

bool CVariation_ref_Base::C_E_Consequence::C_Frameshift::IsSetX_length ( void  ) const

inline

Check if a value has been assigned to X_length data member.

Data member X_length is optional; its type is defined as 'typedef int TX_length'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2526 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

IsSetXref()

bool CPhenotype_Base::IsSetXref ( void  ) const

inline

Check if a value has been assigned to Xref data member.

Data member Xref is optional; its type is defined as 'typedef list< CRef< CDbtag > > TXref'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 389 of file Phenotype_.hpp.

References CPhenotype_Base::m_set_State.

IsSplicing()

bool CVariation_ref_Base::C_E_Consequence::IsSplicing ( void  ) const

inline

Check if variant Splicing is selected.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 2708 of file Variation_ref_.hpp.

References CVariation_ref_Base::C_Data::m_choice.

IsThis()

bool CDelta_item_Base::C_Seq::IsThis ( void  ) const

inline

Check if variant This is selected.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 501 of file Delta_item_.hpp.

Referenced by variation::CVariationUtil::ChangeToDelins(), variation_ref::CVariationUtil::ChangeToDelins(), variation_ref::CHgvsParser::x_GetInstData(), variation_ref::CHgvsParser::x_GetInstLength(), and variation::CHgvsParser::x_GetInstLength().

IsUniparental_disomy()

bool CVariation_ref_Base::C_Data::IsUniparental_disomy ( void  ) const

inline

Check if variant Uniparental_disomy is selected.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 2443 of file Variation_ref_.hpp.

References CVariation_ref_Base::C_Data::e_Uniparental_disomy, and CVariation_ref_Base::C_Data::m_choice.

Referenced by CVariation_ref::IsUniparentalDisomy(), and variation::CVariationUtil::x_AsVariation().

IsUnknown() [1/2]

bool CVariation_ref_Base::C_Data::IsUnknown ( void  ) const

inline

Check if variant Unknown is selected.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 2411 of file Variation_ref_.hpp.

References CVariation_ref_Base::C_Data::e_Unknown, and CVariation_ref_Base::C_Data::m_choice.

Referenced by CVariation_ref::IsUnknown(), and variation::CVariationUtil::x_AsVariation().

IsUnknown() [2/2]

bool CVariation_ref_Base::C_E_Consequence::IsUnknown ( void  ) const

inline

Check if variant Unknown is selected.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 2696 of file Variation_ref_.hpp.

References CVariation_ref_Base::C_Data::e_Unknown, and CVariation_ref_Base::C_Data::m_choice.

IsVariation()

bool CVariation_ref_Base::C_E_Consequence::IsVariation ( void  ) const

inline

Check if variant Variation is selected.

Variation type is defined as 'typedef CVariation_ref TVariation'.

Returns

• true, if the variant is selected.
• false, otherwise.

Definition at line 2740 of file Variation_ref_.hpp.

References CVariation_ref_Base::C_Data::m_choice.

operator=() [1/19]

C_Condition& CVariation_ref_Base::C_E_Somatic_origin::C_Condition::operator= ( const C_Condition &  )

private

operator=() [2/19]

C_Data& CVariation_ref_Base::C_Data::operator= ( const C_Data &  )

private

operator=() [3/19]

C_E_Consequence& CVariation_ref_Base::C_E_Consequence::operator= ( const C_E_Consequence &  )

private

operator=() [4/19]

C_E_Somatic_origin& CVariation_ref_Base::C_E_Somatic_origin::operator= ( const C_E_Somatic_origin &  )

private

operator=() [5/19]

C_Frameshift& CVariation_ref_Base::C_E_Consequence::C_Frameshift::operator= ( const C_Frameshift &  )

private

operator=() [6/19]

C_Loss_of_heterozygosity& CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::operator= ( const C_Loss_of_heterozygosity &  )

private

operator=() [7/19]

C_Seq& CDelta_item_Base::C_Seq::operator= ( const C_Seq &  )

private

operator=() [8/19]

C_Set& CVariation_ref_Base::C_Data::C_Set::operator= ( const C_Set &  )

private

operator=() [9/19]

CDelta_item_Base& CDelta_item_Base::operator= ( const CDelta_item_Base &  )

private

operator=() [10/19]

CExt_loc& CExt_loc::operator= ( const CExt_loc &  value )

private

operator=() [11/19]

CExt_loc_Base& CExt_loc_Base::operator= ( const CExt_loc_Base &  )

private

operator=() [12/19]

CPhenotype& CPhenotype::operator= ( const CPhenotype &  value )

private

operator=() [13/19]

CPhenotype_Base& CPhenotype_Base::operator= ( const CPhenotype_Base &  )

private

operator=() [14/19]

CPopulation_data& CPopulation_data::operator= ( const CPopulation_data &  value )

private

operator=() [15/19]

CPopulation_data_Base& CPopulation_data_Base::operator= ( const CPopulation_data_Base &  )

private

operator=() [16/19]

CVariantProperties_Base& CVariantProperties_Base::operator= ( const CVariantProperties_Base &  )

private

operator=() [17/19]

CVariation_inst& CVariation_inst::operator= ( const CVariation_inst &  value )

private

operator=() [18/19]

CVariation_inst_Base& CVariation_inst_Base::operator= ( const CVariation_inst_Base &  )

private

operator=() [19/19]

CVariation_ref_Base& CVariation_ref_Base::operator= ( const CVariation_ref_Base &  )

private

Reset() [1/15]

void CDelta_item_Base::C_Seq::Reset

(

void

)

Reset the whole object.

Definition at line 53 of file Delta_item_.cpp.

References CDelta_item_Base::C_Seq::e_not_set, CDelta_item_Base::C_Seq::m_choice, and CDelta_item_Base::C_Seq::ResetSelection().

Reset() [2/15]

void CDelta_item_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 221 of file Delta_item_.cpp.

References CDelta_item_Base::ResetAction(), CDelta_item_Base::ResetMultiplier(), CDelta_item_Base::ResetMultiplier_fuzz(), and CDelta_item_Base::ResetSeq().

Referenced by CDelta_item_Base::C_Seq::~C_Seq().

Reset() [3/15]

void CExt_loc_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 80 of file Ext_loc_.cpp.

References CExt_loc_Base::ResetId(), and CExt_loc_Base::ResetLocation().

Reset() [4/15]

void CPhenotype_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 85 of file Phenotype_.cpp.

References CPhenotype_Base::ResetClinical_significance(), CPhenotype_Base::ResetSource(), CPhenotype_Base::ResetTerm(), and CPhenotype_Base::ResetXref().

Reset() [5/15]

void CPopulation_data_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 73 of file Population_data_.cpp.

References CPopulation_data_Base::ResetAllele_frequency(), CPopulation_data_Base::ResetChromosomes_tested(), CPopulation_data_Base::ResetFlags(), CPopulation_data_Base::ResetGenotype_frequency(), CPopulation_data_Base::ResetPopulation(), and CPopulation_data_Base::ResetSample_ids().

Reset() [6/15]

void CVariantProperties_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 203 of file VariantProperties_.cpp.

References CVariantProperties_Base::ResetAllele_frequency(), CVariantProperties_Base::ResetAllele_origin(), CVariantProperties_Base::ResetAllele_state(), CVariantProperties_Base::ResetConfidence(), CVariantProperties_Base::ResetEffect(), CVariantProperties_Base::ResetFrequency_based_validation(), CVariantProperties_Base::ResetGene_location(), CVariantProperties_Base::ResetGenotype(), CVariantProperties_Base::ResetIs_ancestral_allele(), CVariantProperties_Base::ResetMap_weight(), CVariantProperties_Base::ResetMapping(), CVariantProperties_Base::ResetOther_validation(), CVariantProperties_Base::ResetProject_data(), CVariantProperties_Base::ResetQuality_check(), CVariantProperties_Base::ResetResource_link(), and CVariantProperties_Base::ResetVersion().

Reset() [7/15]

void CVariation_inst_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 96 of file Variation_inst_.cpp.

References CVariation_inst_Base::ResetDelta(), CVariation_inst_Base::ResetObservation(), and CVariation_inst_Base::ResetType().

Reset() [8/15]

void CVariation_ref_Base::C_Data::C_Set::Reset

(

void

)

Reset the whole object.

Definition at line 158 of file Variation_ref_.cpp.

References CVariation_ref_Base::ResetName().

Reset() [9/15]

void CVariation_ref_Base::C_Data::Reset

(

void

)

Reset the whole object.

Definition at line 191 of file Variation_ref_.cpp.

References CVariation_ref_Base::C_Data::e_not_set, CVariation_ref_Base::C_Data::m_choice, and CVariation_ref_Base::C_Data::ResetSelection().

Reset() [10/15]

void CVariation_ref_Base::C_E_Consequence::C_Frameshift::Reset

(

void

)

Reset the whole object.

Definition at line 332 of file Variation_ref_.cpp.

Reset() [11/15]

void CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::Reset

(

void

)

Reset the whole object.

Definition at line 375 of file Variation_ref_.cpp.

Reset() [12/15]

void CVariation_ref_Base::C_E_Consequence::Reset

(

void

)

Reset the whole object.

Definition at line 405 of file Variation_ref_.cpp.

References CVariation_ref_Base::C_E_Consequence::e_not_set, CVariation_ref_Base::C_E_Consequence::m_choice, and CVariation_ref_Base::C_E_Consequence::ResetSelection().

Reset() [13/15]

void CVariation_ref_Base::C_E_Somatic_origin::C_Condition::Reset

(

void

)

Reset the whole object.

Definition at line 584 of file Variation_ref_.cpp.

References CVariation_ref_Base::ResetDescription().

Referenced by CVariation_ref_Base::C_E_Somatic_origin::SetCondition().

Reset() [14/15]

void CVariation_ref_Base::C_E_Somatic_origin::Reset

(

void

)

Reset the whole object.

Definition at line 648 of file Variation_ref_.cpp.

Reset() [15/15]

void CVariation_ref_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 877 of file Variation_ref_.cpp.

References CVariation_ref_Base::ResetAllele_frequency(), CVariation_ref_Base::ResetAllele_origin(), CVariation_ref_Base::ResetAllele_state(), CVariation_ref_Base::ResetClinical_test(), CVariation_ref_Base::ResetConsequence(), CVariation_ref_Base::ResetData(), CVariation_ref_Base::ResetDescription(), CVariation_ref_Base::ResetExt(), CVariation_ref_Base::ResetExt_locs(), CVariation_ref_Base::ResetId(), CVariation_ref_Base::ResetIs_ancestral_allele(), CVariation_ref_Base::ResetLocation(), CVariation_ref_Base::ResetMethod(), CVariation_ref_Base::ResetName(), CVariation_ref_Base::ResetOther_ids(), CVariation_ref_Base::ResetParent_id(), CVariation_ref_Base::ResetPhenotype(), CVariation_ref_Base::ResetPopulation_data(), CVariation_ref_Base::ResetPub(), CVariation_ref_Base::ResetSample_id(), CVariation_ref_Base::ResetSomatic_origin(), CVariation_ref_Base::ResetSynonyms(), CVariation_ref_Base::ResetValidated(), and CVariation_ref_Base::ResetVariant_prop().

Referenced by CVariation_ref_Base::C_Data::~C_Data(), and CVariation_ref_Base::C_E_Consequence::~C_E_Consequence().

ResetAction()

void CDelta_item_Base::ResetAction ( void  )

inline

Reset Action data member.

Definition at line 614 of file Delta_item_.hpp.

References CDelta_item_Base::eAction_morph, CDelta_item_Base::m_Action, and CDelta_item_Base::m_set_State.

Referenced by variation::CVariationUtil::ChangeToDelins(), variation_ref::CVariationUtil::ChangeToDelins(), CDelta_item_Base::Reset(), and CDelta_item_Base::SetDefaultAction().

ResetAllele_frequency() [1/3]

void CPopulation_data_Base::ResetAllele_frequency ( void  )

inline

Reset Allele_frequency data member.

Definition at line 549 of file Population_data_.hpp.

References CPopulation_data_Base::m_Allele_frequency, and CPopulation_data_Base::m_set_State.

Referenced by CPopulation_data_Base::Reset().

ResetAllele_frequency() [2/3]

void CVariantProperties_Base::ResetAllele_frequency ( void  )

inline

Reset Allele_frequency data member.

Definition at line 1612 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Allele_frequency, and CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::Reset(), and CVariation_ref::ResetAllele_frequency().

ResetAllele_frequency() [3/3]

void CVariation_ref_Base::ResetAllele_frequency ( void  )

inline

Reset Allele_frequency data member.

Definition at line 3353 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Allele_frequency, and CVariation_ref_Base::m_set_State.

Referenced by CVariation_ref::PostRead(), CVariation_ref_Base::Reset(), CVariation_ref::ResetAllele_frequency(), and CVariation_ref::SetAllele_frequency().

ResetAllele_origin() [1/2]

void CVariantProperties_Base::ResetAllele_origin ( void  )

inline

Reset Allele_origin data member.

Definition at line 1518 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Allele_origin, and CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::Reset(), and CVariation_ref::ResetAllele_origin().

ResetAllele_origin() [2/2]

void CVariation_ref_Base::ResetAllele_origin ( void  )

inline

Reset Allele_origin data member.

Definition at line 3259 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Allele_origin, and CVariation_ref_Base::m_set_State.

Referenced by CVariation_ref::PostRead(), CVariation_ref_Base::Reset(), CVariation_ref::ResetAllele_origin(), and CVariation_ref::SetAllele_origin().

ResetAllele_state() [1/2]

void CVariantProperties_Base::ResetAllele_state ( void  )

inline

Reset Allele_state data member.

Definition at line 1565 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Allele_state, and CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::Reset(), and CVariation_ref::ResetAllele_state().

ResetAllele_state() [2/2]

void CVariation_ref_Base::ResetAllele_state ( void  )

inline

Reset Allele_state data member.

Definition at line 3306 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Allele_state, and CVariation_ref_Base::m_set_State.

Referenced by CVariation_ref::PostRead(), CVariation_ref_Base::Reset(), CVariation_ref::ResetAllele_state(), and CVariation_ref::SetAllele_state().

ResetChromosomes_tested()

void CPopulation_data_Base::ResetChromosomes_tested ( void  )

inline

Reset Chromosomes_tested data member.

Definition at line 477 of file Population_data_.hpp.

References CPopulation_data_Base::m_Chromosomes_tested, and CPopulation_data_Base::m_set_State.

Referenced by CPopulation_data_Base::Reset().

ResetClinical_significance()

void CPhenotype_Base::ResetClinical_significance ( void  )

inline

Reset Clinical_significance data member.

Definition at line 426 of file Phenotype_.hpp.

References CPhenotype_Base::m_Clinical_significance, and CPhenotype_Base::m_set_State.

Referenced by CPhenotype_Base::Reset().

ResetClinical_test()

void CVariation_ref_Base::ResetClinical_test

(

void

)

Reset Clinical_test data member.

Definition at line 788 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Clinical_test, and CVariation_ref_Base::m_set_State.

Referenced by CVariation_ref::PostRead(), and CVariation_ref_Base::Reset().

ResetCondition()

void CVariation_ref_Base::C_E_Somatic_origin::ResetCondition

(

void

)

Reset Condition data member.

Definition at line 631 of file Variation_ref_.cpp.

ResetConfidence()

void CVariantProperties_Base::ResetConfidence ( void  )

inline

Reset Confidence data member.

Definition at line 1424 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Confidence, and CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::Reset().

ResetConsequence()

void CVariation_ref_Base::ResetConsequence

(

void

)

Reset Consequence data member.

Definition at line 825 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Consequence, and CVariation_ref_Base::m_set_State.

Referenced by CVariation_ref_Base::Reset().

ResetData()

void CVariation_ref_Base::ResetData

(

void

)

Reset Data data member.

Definition at line 811 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Data, and CRef< C, Locker >::Reset().

Referenced by CVariation_ref_Base::CVariation_ref_Base(), CVariation_ref_Base::GetData(), CVariation_ref_Base::Reset(), and CVariation_ref_Base::SetData().

ResetDelta()

END_ENUM_INFO void CVariation_inst_Base::ResetDelta

(

void

)

Reset Delta data member.

Definition at line 90 of file Variation_inst_.cpp.

References CVariation_inst_Base::m_Delta, and CVariation_inst_Base::m_set_State.

Referenced by CVariation_inst_Base::Reset().

ResetDescription() [1/2]

void CVariation_ref_Base::C_E_Somatic_origin::C_Condition::ResetDescription

(

void

)

Reset Description data member.

Definition at line 572 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Description, and CVariation_ref_Base::m_set_State.

ResetDescription() [2/2]

void CVariation_ref_Base::ResetDescription

(

void

)

Reset Description data member.

Definition at line 747 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Description, and CVariation_ref_Base::m_set_State.

Referenced by CVariation_ref_Base::C_E_Somatic_origin::C_Condition::Reset(), and CVariation_ref_Base::Reset().

ResetEffect()

void CVariantProperties_Base::ResetEffect ( void  )

inline

Reset Effect data member.

Definition at line 1117 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Effect, and CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::Reset().

ResetExt()

void CVariation_ref_Base::ResetExt

(

void

)

Reset Ext data member.

Definition at line 854 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Ext.

Referenced by CVariation_ref_Base::Reset(), and CVariation_ref::ResetExt().

ResetExt_locs()

void CVariation_ref_Base::ResetExt_locs

(

void

)

Reset Ext_locs data member.

Definition at line 848 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Ext_locs, and CVariation_ref_Base::m_set_State.

Referenced by CVariation_ref_Base::Reset(), and CVariation_ref::ResetExt_locs().

ResetFlags()

void CPopulation_data_Base::ResetFlags ( void  )

inline

Reset Flags data member.

Definition at line 596 of file Population_data_.hpp.

References CPopulation_data_Base::m_Flags, and CPopulation_data_Base::m_set_State.

Referenced by CPopulation_data_Base::Reset().

ResetFrequency_based_validation()

void CVariantProperties_Base::ResetFrequency_based_validation ( void  )

inline

Reset Frequency_based_validation data member.

Definition at line 1258 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Frequency_based_validation, and CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::Reset().

ResetGene_location()

void CVariantProperties_Base::ResetGene_location ( void  )

inline

Reset Gene_location data member.

Definition at line 1070 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Gene_location, and CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::Reset(), variation_ref::CVariationUtil::SetVariantProperties(), and variation_ref::CVariationUtil::x_SetVariantPropertiesForIntronic().

ResetGenotype()

void CVariantProperties_Base::ResetGenotype ( void  )

inline

Reset Genotype data member.

Definition at line 1305 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Genotype, and CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::Reset().

ResetGenotype_frequency()

void CPopulation_data_Base::ResetGenotype_frequency ( void  )

inline

Reset Genotype_frequency data member.

Definition at line 430 of file Population_data_.hpp.

References CPopulation_data_Base::m_Genotype_frequency, and CPopulation_data_Base::m_set_State.

Referenced by CPopulation_data_Base::Reset().

ResetId() [1/2]

void CExt_loc_Base::ResetId

(

void

)

Reset Id data member.

Definition at line 52 of file Ext_loc_.cpp.

References CExt_loc_Base::m_Id.

Referenced by CExt_loc_Base::CExt_loc_Base(), CExt_loc_Base::GetId(), CExt_loc_Base::Reset(), and CExt_loc_Base::SetId().

ResetId() [2/2]

void CVariation_ref_Base::ResetId

(

void

)

Reset Id data member.

Definition at line 678 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Id.

Referenced by CVariation_ref_Base::Reset().

ResetIs_ancestral_allele() [1/2]

void CVariantProperties_Base::ResetIs_ancestral_allele ( void  )

inline

Reset Is_ancestral_allele data member.

Definition at line 1659 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Is_ancestral_allele, and CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::Reset(), and CVariation_ref::ResetIs_ancestral_allele().

ResetIs_ancestral_allele() [2/2]

void CVariation_ref_Base::ResetIs_ancestral_allele ( void  )

inline

Reset Is_ancestral_allele data member.

Definition at line 3400 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Is_ancestral_allele, and CVariation_ref_Base::m_set_State.

Referenced by CVariation_ref::PostRead(), CVariation_ref_Base::Reset(), CVariation_ref::ResetIs_ancestral_allele(), and CVariation_ref::SetIs_ancestral_allele().

ResetLocation() [1/2]

void CExt_loc_Base::ResetLocation

(

void

)

Reset Location data member.

Definition at line 66 of file Ext_loc_.cpp.

References CExt_loc_Base::m_Location.

Referenced by CExt_loc_Base::CExt_loc_Base(), CExt_loc_Base::GetLocation(), CExt_loc_Base::Reset(), and CExt_loc_Base::SetLocation().

ResetLocation() [2/2]

void CVariation_ref_Base::ResetLocation

(

void

)

Reset Location data member.

Definition at line 831 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Location.

Referenced by CVariation_ref_Base::Reset(), and CVariation_ref::ResetLocation().

ResetMap_weight()

void CVariantProperties_Base::ResetMap_weight ( void  )

inline

Reset Map_weight data member.

Definition at line 1211 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Map_weight, and CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::Reset().

ResetMapping()

void CVariantProperties_Base::ResetMapping ( void  )

inline

Reset Mapping data member.

Definition at line 1164 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Mapping, and CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::Reset().

ResetMethod()

void CVariation_ref_Base::ResetMethod

(

void

)

Reset Method data member.

Definition at line 759 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Method, and CVariation_ref_Base::m_set_State.

Referenced by CVariation_ref_Base::Reset().

ResetMultiplier()

void CDelta_item_Base::ResetMultiplier ( void  )

inline

Reset Multiplier data member.

Definition at line 546 of file Delta_item_.hpp.

References CDelta_item_Base::m_Multiplier, and CDelta_item_Base::m_set_State.

Referenced by variation::CVariationUtil::ChangeToDelins(), variation_ref::CVariationUtil::ChangeToDelins(), and CDelta_item_Base::Reset().

ResetMultiplier_fuzz()

void CDelta_item_Base::ResetMultiplier_fuzz

(

void

)

Reset Multiplier_fuzz data member.

Definition at line 204 of file Delta_item_.cpp.

References CDelta_item_Base::m_Multiplier_fuzz.

Referenced by CDelta_item_Base::Reset().

ResetName() [1/2]

void CVariation_ref_Base::C_Data::C_Set::ResetName

(

void

)

Reset Name data member.

Definition at line 152 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Name, and CVariation_ref_Base::m_set_State.

ResetName() [2/2]

void CVariation_ref_Base::ResetName

(

void

)

Reset Name data member.

Definition at line 735 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Name, and CVariation_ref_Base::m_set_State.

Referenced by CVariation_ref_Base::C_Data::C_Set::Reset(), and CVariation_ref_Base::Reset().

ResetObject_id()

void CVariation_ref_Base::C_E_Somatic_origin::C_Condition::ResetObject_id

(

void

)

Reset Object_id data member.

Definition at line 578 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_set_State.

ResetObservation()

void CVariation_inst_Base::ResetObservation ( void  )

inline

Reset Observation data member.

Definition at line 362 of file Variation_inst_.hpp.

References CVariation_inst_Base::m_Observation, and CVariation_inst_Base::m_set_State.

Referenced by CVariation_inst_Base::Reset().

ResetOther_ids()

void CVariation_ref_Base::ResetOther_ids

(

void

)

Reset Other_ids data member.

Definition at line 729 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Other_ids, and CVariation_ref_Base::m_set_State.

Referenced by CVariation_ref_Base::Reset().

ResetOther_validation()

void CVariantProperties_Base::ResetOther_validation ( void  )

inline

Reset Other_validation data member.

Definition at line 1471 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Other_validation, and CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::Reset(), and CVariation_ref::ResetValidated().

ResetParent_id()

void CVariation_ref_Base::ResetParent_id

(

void

)

Reset Parent_id data member.

Definition at line 695 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Parent_id.

Referenced by CVariation_ref_Base::Reset().

ResetPhase()

void CVariation_ref_Base::C_E_Consequence::C_Frameshift::ResetPhase ( void  )

inline

Reset Phase data member.

Definition at line 2491 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

ResetPhenotype()

void CVariation_ref_Base::ResetPhenotype

(

void

)

Reset Phenotype data member.

Definition at line 753 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Phenotype, and CVariation_ref_Base::m_set_State.

Referenced by CVariation_ref_Base::Reset().

ResetPopulation()

END_ENUM_INFO void CPopulation_data_Base::ResetPopulation

(

void

)

Reset Population data member.

Definition at line 61 of file Population_data_.cpp.

References CPopulation_data_Base::m_Population, and CPopulation_data_Base::m_set_State.

Referenced by CPopulation_data_Base::Reset().

ResetPopulation_data()

void CVariation_ref_Base::ResetPopulation_data

(

void

)

Reset Population_data data member.

Definition at line 765 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Population_data, and CVariation_ref_Base::m_set_State.

Referenced by CVariation_ref::PostRead(), and CVariation_ref_Base::Reset().

ResetProject_data()

END_ENUM_INFO void CVariantProperties_Base::ResetProject_data

(

void

)

Reset Project_data data member.

Definition at line 197 of file VariantProperties_.cpp.

References CVariantProperties_Base::m_Project_data, and CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::Reset().

ResetPub()

void CVariation_ref_Base::ResetPub

(

void

)

Reset Pub data member.

Definition at line 794 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Pub.

Referenced by CVariation_ref::PostRead(), and CVariation_ref_Base::Reset().

ResetQuality_check()

void CVariantProperties_Base::ResetQuality_check ( void  )

inline

Reset Quality_check data member.

Definition at line 1377 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Quality_check, and CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::Reset().

ResetReference()

void CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::ResetReference

(

void

)

Reset Reference data member.

Definition at line 363 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_set_State.

ResetResource_link()

void CVariantProperties_Base::ResetResource_link ( void  )

inline

Reset Resource_link data member.

Definition at line 1023 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Resource_link, and CVariantProperties_Base::m_set_State.

Referenced by CVariantProperties_Base::Reset().

ResetSample_id()

void CVariation_ref_Base::ResetSample_id

(

void

)

Reset Sample_id data member.

Definition at line 712 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Sample_id.

Referenced by CVariation_ref_Base::Reset().

ResetSample_ids()

void CPopulation_data_Base::ResetSample_ids

(

void

)

Reset Sample_ids data member.

Definition at line 67 of file Population_data_.cpp.

References CPopulation_data_Base::m_Sample_ids, and CPopulation_data_Base::m_set_State.

Referenced by CPopulation_data_Base::Reset().

ResetSelection() [1/3]

void CDelta_item_Base::C_Seq::ResetSelection

(

void

)

Reset the selection (set it to e_not_set).

Definition at line 59 of file Delta_item_.cpp.

References e_not_set.

Referenced by CDelta_item_Base::C_Seq::Reset().

ResetSelection() [2/3]

void CVariation_ref_Base::C_Data::ResetSelection

(

void

)

Reset the selection (set it to e_not_set).

Definition at line 197 of file Variation_ref_.cpp.

References CVariation_ref_Base::C_Data::e_Instance, CVariation_ref_Base::C_Data::e_not_set, CVariation_ref_Base::C_Data::e_Note, CVariation_ref_Base::C_Data::e_Set, CVariation_ref_Base::C_Data::m_choice, CVariation_ref_Base::C_Data::m_object, and CVariation_ref_Base::C_Data::m_string.

Referenced by CVariation_ref_Base::C_Data::Reset(), CVariation_ref_Base::C_Data::SetInstance(), and CVariation_ref_Base::C_Data::SetSet().

ResetSelection() [3/3]

void CVariation_ref_Base::C_E_Consequence::ResetSelection

(

void

)

Reset the selection (set it to e_not_set).

Definition at line 411 of file Variation_ref_.cpp.

References CVariation_ref_Base::C_E_Consequence::e_Frameshift, CVariation_ref_Base::C_E_Consequence::e_Loss_of_heterozygosity, CVariation_ref_Base::C_E_Consequence::e_not_set, CVariation_ref_Base::C_E_Consequence::e_Note, CVariation_ref_Base::C_E_Consequence::e_Variation, CVariation_ref_Base::C_E_Consequence::m_choice, CVariation_ref_Base::C_E_Consequence::m_object, and CVariation_ref_Base::C_E_Consequence::m_string.

Referenced by CVariation_ref_Base::C_E_Consequence::Reset(), CVariation_ref_Base::C_E_Consequence::SetFrameshift(), CVariation_ref_Base::C_E_Consequence::SetLoss_of_heterozygosity(), and CVariation_ref_Base::C_E_Consequence::SetVariation().

ResetSeq()

END_ENUM_INFO void CDelta_item_Base::ResetSeq

(

void

)

Reset Seq data member.

Definition at line 187 of file Delta_item_.cpp.

References CDelta_item_Base::m_Seq.

Referenced by CDelta_item_Base::Reset().

ResetSomatic_origin()

void CVariation_ref_Base::ResetSomatic_origin

(

void

)

Reset Somatic_origin data member.

Definition at line 871 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_set_State, and CVariation_ref_Base::m_Somatic_origin.

Referenced by CVariation_ref_Base::Reset().

ResetSource() [1/2]

END_ENUM_INFO void CPhenotype_Base::ResetSource

(

void

)

Reset Source data member.

Definition at line 67 of file Phenotype_.cpp.

References CPhenotype_Base::m_set_State, and CPhenotype_Base::m_Source.

Referenced by CPhenotype_Base::Reset().

ResetSource() [2/2]

void CVariation_ref_Base::C_E_Somatic_origin::ResetSource

(

void

)

Reset Source data member.

Definition at line 614 of file Variation_ref_.cpp.

ResetSynonyms()

void CVariation_ref_Base::ResetSynonyms

(

void

)

Reset Synonyms data member.

Definition at line 741 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_set_State, and CVariation_ref_Base::m_Synonyms.

Referenced by CVariation_ref_Base::Reset().

ResetTerm()

void CPhenotype_Base::ResetTerm

(

void

)

Reset Term data member.

Definition at line 73 of file Phenotype_.cpp.

References CPhenotype_Base::m_set_State, and CPhenotype_Base::m_Term.

Referenced by CPhenotype_Base::Reset().

ResetTest()

void CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::ResetTest

(

void

)

Reset Test data member.

Definition at line 369 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_set_State.

ResetType() [1/2]

void CVariation_inst_Base::ResetType ( void  )

inline

Reset Type data member.

Definition at line 290 of file Variation_inst_.hpp.

References CVariation_inst_Base::m_set_State, and CVariation_inst_Base::m_Type.

Referenced by CVariation_inst_Base::Reset().

ResetType() [2/2]

void CVariation_ref_Base::C_Data::C_Set::ResetType ( void  )

inline

Reset Type data member.

Definition at line 2275 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

ResetValidated()

void CVariation_ref_Base::ResetValidated ( void  )

inline

Reset Validated data member.

Definition at line 3187 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State, and CVariation_ref_Base::m_Validated.

Referenced by CVariation_ref::PostRead(), CVariation_ref_Base::Reset(), CVariation_ref::ResetValidated(), and CVariation_ref::SetValidated().

ResetVariant_prop()

void CVariation_ref_Base::ResetVariant_prop

(

void

)

Reset Variant_prop data member.

Definition at line 771 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Variant_prop.

Referenced by CVariation_ref_Base::Reset().

ResetVariations()

END_ENUM_INFO void CVariation_ref_Base::C_Data::C_Set::ResetVariations

(

void

)

Reset Variations data member.

Definition at line 146 of file Variation_ref_.cpp.

References CVariation_ref_Base::C_Data::C_Set::m_set_State, and CVariation_ref_Base::C_Data::C_Set::m_Variations.

ResetVersion()

void CVariantProperties_Base::ResetVersion ( void  )

inline

Reset Version data member.

Definition at line 976 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_set_State, and CVariantProperties_Base::m_Version.

Referenced by CVariantProperties_Base::Reset().

ResetX_length()

void CVariation_ref_Base::C_E_Consequence::C_Frameshift::ResetX_length ( void  )

inline

Reset X_length data member.

Definition at line 2538 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

ResetXref()

void CPhenotype_Base::ResetXref

(

void

)

Reset Xref data member.

Definition at line 79 of file Phenotype_.cpp.

References CPhenotype_Base::m_set_State, and CPhenotype_Base::m_Xref.

Referenced by CPhenotype_Base::Reset().

Select() [1/6]

void CDelta_item_Base::C_Seq::Select	(	E_Choice	index,
		EResetVariant	reset,
		CObjectMemoryPool *	pool
	)

Select the requested variant if needed, allocating CObject variants from memory pool.

Select() [2/6]

void CVariation_ref_Base::C_Data::Select	(	E_Choice	index,
		EResetVariant	reset,
		CObjectMemoryPool *	pool
	)

Select the requested variant if needed, allocating CObject variants from memory pool.

Select() [3/6]

void CVariation_ref_Base::C_E_Consequence::Select	(	E_Choice	index,
		EResetVariant	reset,
		CObjectMemoryPool *	pool
	)

Select the requested variant if needed, allocating CObject variants from memory pool.

Select() [4/6]

void CDelta_item_Base::C_Seq::Select	(	E_Choice	index,
		EResetVariant	reset = eDoResetVariant
	)

Select the requested variant if needed.

Parameters

index	New selection state.
reset	Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant.

Select() [5/6]

void CVariation_ref_Base::C_Data::Select	(	E_Choice	index,
		EResetVariant	reset = eDoResetVariant
	)

Select the requested variant if needed.

Parameters

index	New selection state.
reset	Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant.

Referenced by CVariation_ref_Base::C_Data::SetComplex(), CVariation_ref_Base::C_Data::SetInstance(), CVariation_ref_Base::C_Data::SetNote(), CVariation_ref_Base::C_E_Consequence::SetNote(), CVariation_ref_Base::C_Data::SetSet(), CVariation_ref_Base::C_E_Consequence::SetSplicing(), CVariation_ref_Base::C_Data::SetUniparental_disomy(), CVariation_ref_Base::C_Data::SetUnknown(), and CVariation_ref_Base::C_E_Consequence::SetUnknown().

Select() [6/6]

void CVariation_ref_Base::C_E_Consequence::Select	(	E_Choice	index,
		EResetVariant	reset = eDoResetVariant
	)

Select the requested variant if needed.

Parameters

index	New selection state.
reset	Flag that defines the resetting of the variant data. The data will be reset if either the current selection differs from the new one, or the flag is set to eDoResetVariant.

Referenced by CVariation_ref_Base::C_E_Consequence::SetFrameshift(), CVariation_ref_Base::C_E_Consequence::SetLoss_of_heterozygosity(), CVariation_ref_Base::C_E_Consequence::SetNote(), and CVariation_ref_Base::C_E_Consequence::SetVariation().

SelectionName() [1/3]

NCBI_NS_STD::string CDelta_item_Base::C_Seq::SelectionName ( E_Choice  index )

static

Retrieve selection name (for diagnostic purposes).

Parameters

index

One of possible selection states.

Returns

Name string.

Definition at line 94 of file Delta_item_.cpp.

SelectionName() [2/3]

NCBI_NS_STD::string CVariation_ref_Base::C_Data::SelectionName ( E_Choice  index )

static

Retrieve selection name (for diagnostic purposes).

Parameters

index

One of possible selection states.

Returns

Name string.

Definition at line 241 of file Variation_ref_.cpp.

References CVariation_ref_Base::C_Data::sm_SelectionNames.

SelectionName() [3/3]

NCBI_NS_STD::string CVariation_ref_Base::C_E_Consequence::SelectionName ( E_Choice  index )

static

Retrieve selection name (for diagnostic purposes).

Parameters

index

One of possible selection states.

Returns

Name string.

Definition at line 459 of file Variation_ref_.cpp.

References CVariation_ref_Base::C_E_Consequence::sm_SelectionNames.

SetAction() [1/2]

void CDelta_item_Base::SetAction ( CDelta_item_Base::TAction  value )

inline

Assign a value to Action data member.

Parameters

value

Value to assign

Definition at line 633 of file Delta_item_.hpp.

References CDelta_item_Base::m_Action, CDelta_item_Base::m_set_State, and rapidjson::value.

Referenced by CIntronOffsetHelper::x_SetDeltaItemOffset().

SetAction() [2/2]

CDelta_item_Base::TAction & CDelta_item_Base::SetAction ( void  )

inline

Assign a value to Action data member.

Returns

Reference to the data value.

Definition at line 640 of file Delta_item_.hpp.

References CDelta_item_Base::IsSetAction(), CDelta_item_Base::m_Action, CDelta_item_Base::m_set_State, and CSerialObject::UnassignedByte().

Referenced by CDelta_item::SetDeletion(), and CDelta_item::SetInsertion().

SetAllele_frequency() [1/6]

void CPopulation_data_Base::SetAllele_frequency ( CPopulation_data_Base::TAllele_frequency  value )

inline

Assign a value to Allele_frequency data member.

Parameters

value

Value to assign

Definition at line 565 of file Population_data_.hpp.

References CPopulation_data_Base::m_Allele_frequency, CPopulation_data_Base::m_set_State, and rapidjson::value.

SetAllele_frequency() [2/6]

void CVariantProperties_Base::SetAllele_frequency ( CVariantProperties_Base::TAllele_frequency  value )

inline

Assign a value to Allele_frequency data member.

Parameters

value

Value to assign

Definition at line 1628 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Allele_frequency, CVariantProperties_Base::m_set_State, and rapidjson::value.

Referenced by CVariation_ref::PostRead(), and CVariation_ref::SetAllele_frequency().

SetAllele_frequency() [3/6]

void CVariation_ref_Base::SetAllele_frequency ( CVariation_ref_Base::TAllele_frequency  value )

inline

Assign a value to Allele_frequency data member.

Parameters

value

Value to assign

Definition at line 3369 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Allele_frequency, CVariation_ref_Base::m_set_State, and rapidjson::value.

SetAllele_frequency() [4/6]

CPopulation_data_Base::TAllele_frequency & CPopulation_data_Base::SetAllele_frequency ( void  )

inline

Assign a value to Allele_frequency data member.

Returns

Reference to the data value.

Definition at line 572 of file Population_data_.hpp.

References CPopulation_data_Base::IsSetAllele_frequency(), CPopulation_data_Base::m_Allele_frequency, CPopulation_data_Base::m_set_State, and CSerialObject::UnassignedByte().

SetAllele_frequency() [5/6]

CVariantProperties_Base::TAllele_frequency & CVariantProperties_Base::SetAllele_frequency ( void  )

inline

Assign a value to Allele_frequency data member.

Returns

Reference to the data value.

Definition at line 1635 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetAllele_frequency(), CVariantProperties_Base::m_Allele_frequency, CVariantProperties_Base::m_set_State, and CSerialObject::UnassignedByte().

SetAllele_frequency() [6/6]

CVariation_ref_Base::TAllele_frequency & CVariation_ref_Base::SetAllele_frequency ( void  )

inline

Assign a value to Allele_frequency data member.

Returns

Reference to the data value.

Definition at line 3376 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetAllele_frequency(), CVariation_ref_Base::m_Allele_frequency, CVariation_ref_Base::m_set_State, and CSerialObject::UnassignedByte().

SetAllele_origin() [1/4]

void CVariantProperties_Base::SetAllele_origin ( CVariantProperties_Base::TAllele_origin  value )

inline

Assign a value to Allele_origin data member.

Parameters

value

Value to assign

Definition at line 1534 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Allele_origin, CVariantProperties_Base::m_set_State, and rapidjson::value.

Referenced by CVariation_ref::PostRead(), and CVariation_ref::SetAllele_origin().

SetAllele_origin() [2/4]

void CVariation_ref_Base::SetAllele_origin ( CVariation_ref_Base::TAllele_origin  value )

inline

Assign a value to Allele_origin data member.

Parameters

value

Value to assign

Definition at line 3275 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Allele_origin, CVariation_ref_Base::m_set_State, and rapidjson::value.

SetAllele_origin() [3/4]

CVariantProperties_Base::TAllele_origin & CVariantProperties_Base::SetAllele_origin ( void  )

inline

Assign a value to Allele_origin data member.

Returns

Reference to the data value.

Definition at line 1541 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetAllele_origin(), CVariantProperties_Base::m_Allele_origin, CVariantProperties_Base::m_set_State, and CSerialObject::UnassignedByte().

SetAllele_origin() [4/4]

CVariation_ref_Base::TAllele_origin & CVariation_ref_Base::SetAllele_origin ( void  )

inline

Assign a value to Allele_origin data member.

Returns

Reference to the data value.

Definition at line 3282 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetAllele_origin(), CVariation_ref_Base::m_Allele_origin, CVariation_ref_Base::m_set_State, and CSerialObject::UnassignedByte().

SetAllele_state() [1/4]

void CVariantProperties_Base::SetAllele_state ( CVariantProperties_Base::TAllele_state  value )

inline

Assign a value to Allele_state data member.

Parameters

value

Value to assign

Definition at line 1581 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Allele_state, CVariantProperties_Base::m_set_State, and rapidjson::value.

Referenced by CVariation_ref::PostRead(), and CVariation_ref::SetAllele_state().

SetAllele_state() [2/4]

void CVariation_ref_Base::SetAllele_state ( CVariation_ref_Base::TAllele_state  value )

inline

Assign a value to Allele_state data member.

Parameters

value

Value to assign

Definition at line 3322 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Allele_state, CVariation_ref_Base::m_set_State, and rapidjson::value.

SetAllele_state() [3/4]

CVariantProperties_Base::TAllele_state & CVariantProperties_Base::SetAllele_state ( void  )

inline

Assign a value to Allele_state data member.

Returns

Reference to the data value.

Definition at line 1588 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetAllele_state(), CVariantProperties_Base::m_Allele_state, CVariantProperties_Base::m_set_State, and CSerialObject::UnassignedByte().

SetAllele_state() [4/4]

CVariation_ref_Base::TAllele_state & CVariation_ref_Base::SetAllele_state ( void  )

inline

Assign a value to Allele_state data member.

Returns

Reference to the data value.

Definition at line 3329 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetAllele_state(), CVariation_ref_Base::m_Allele_state, CVariation_ref_Base::m_set_State, and CSerialObject::UnassignedByte().

SetChromosomes_tested() [1/2]

void CPopulation_data_Base::SetChromosomes_tested ( CPopulation_data_Base::TChromosomes_tested  value )

inline

Assign a value to Chromosomes_tested data member.

Parameters

value

Value to assign

Definition at line 493 of file Population_data_.hpp.

References CPopulation_data_Base::m_Chromosomes_tested, CPopulation_data_Base::m_set_State, and rapidjson::value.

SetChromosomes_tested() [2/2]

CPopulation_data_Base::TChromosomes_tested & CPopulation_data_Base::SetChromosomes_tested ( void  )

inline

Assign a value to Chromosomes_tested data member.

Returns

Reference to the data value.

Definition at line 500 of file Population_data_.hpp.

References CPopulation_data_Base::IsSetChromosomes_tested(), CPopulation_data_Base::m_Chromosomes_tested, CPopulation_data_Base::m_set_State, and CSerialObject::UnassignedByte().

SetClinical_significance() [1/2]

void CPhenotype_Base::SetClinical_significance ( CPhenotype_Base::TClinical_significance  value )

inline

Assign a value to Clinical_significance data member.

Parameters

value

Value to assign

Definition at line 442 of file Phenotype_.hpp.

References CPhenotype_Base::m_Clinical_significance, CPhenotype_Base::m_set_State, and rapidjson::value.

SetClinical_significance() [2/2]

CPhenotype_Base::TClinical_significance & CPhenotype_Base::SetClinical_significance ( void  )

inline

Assign a value to Clinical_significance data member.

Returns

Reference to the data value.

Definition at line 449 of file Phenotype_.hpp.

References CPhenotype_Base::IsSetClinical_significance(), CPhenotype_Base::m_Clinical_significance, CPhenotype_Base::m_set_State, and CSerialObject::UnassignedByte().

SetClinical_test()

CVariation_ref_Base::TClinical_test & CVariation_ref_Base::SetClinical_test ( void  )

inline

Assign a value to Clinical_test data member.

Returns

Reference to the data value.

Definition at line 3240 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Clinical_test, and CVariation_ref_Base::m_set_State.

SetComplex()

void CVariation_ref_Base::C_Data::SetComplex ( void  )

inline

Select the variant.

Definition at line 2473 of file Variation_ref_.hpp.

References CVariation_ref_Base::C_Data::e_Complex, eDoNotResetVariant, and CVariation_ref_Base::C_Data::Select().

Referenced by CVariation_ref::SetComplex().

SetCondition() [1/2]

void CVariation_ref_Base::C_E_Somatic_origin::SetCondition

(

TCondition &

value

)

Assign a value to Condition data member.

Parameters

value

Reference to value.

Definition at line 636 of file Variation_ref_.cpp.

References CVariation_ref_Base::C_E_Somatic_origin::C_Condition::Reset(), and rapidjson::value.

SetCondition() [2/2]

CVariation_ref_Base::C_E_Somatic_origin::TCondition & CVariation_ref_Base::C_E_Somatic_origin::SetCondition

(

void

)

Assign a value to Condition data member.

Returns

Reference to the data value.

Definition at line 641 of file Variation_ref_.cpp.

References CVariation_ref_Base::C_E_Somatic_origin::C_Condition::Reset().

SetConfidence() [1/2]

void CVariantProperties_Base::SetConfidence ( CVariantProperties_Base::TConfidence  value )

inline

Assign a value to Confidence data member.

Parameters

value

Value to assign

Definition at line 1440 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Confidence, CVariantProperties_Base::m_set_State, and rapidjson::value.

SetConfidence() [2/2]

CVariantProperties_Base::TConfidence & CVariantProperties_Base::SetConfidence ( void  )

inline

Assign a value to Confidence data member.

Returns

Reference to the data value.

Definition at line 1447 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetConfidence(), CVariantProperties_Base::m_Confidence, CVariantProperties_Base::m_set_State, and CSerialObject::UnassignedByte().

SetConsequence()

CVariation_ref_Base::TConsequence & CVariation_ref_Base::SetConsequence ( void  )

inline

Assign a value to Consequence data member.

Returns

Reference to the data value.

Definition at line 3504 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Consequence, and CVariation_ref_Base::m_set_State.

Referenced by CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_E1804_ETC(), CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation1805_ETC(), CModifySeqId::x_UpdateVariation(), and CReportTrim::x_UpdateVariation().

SetData() [1/2]

void CVariation_ref_Base::SetData

(

CVariation_ref_Base::TData &

value

)

Assign a value to Data data member.

Parameters

value

Reference to value.

Definition at line 820 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Data, CRef< C, Locker >::Reset(), and rapidjson::value.

Referenced by variation_ref::CVariationUtil::AdjustDelinsToInterval(), variation_ref::CVariationUtil::ChangeToDelins(), variation_ref::RepackageAssertedSequence(), variation_ref::CVariationUtil::s_AddIntronicOffsets(), variation_ref::CVariationUtil::s_FactorOutLocsInPlace(), variation_ref::CVariationUtil::s_PropagateLocsInPlace(), variation_ref::CVariationUtil::s_Remap(), variation_ref::CVariationUtil::s_ResolveIntronicOffsets(), s_SetReplaces(), variation_ref::CVariationUtil::SetReferenceSequence(), variation_ref::CVariationUtil::SetVariantProperties(), CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_E1804_ETC(), CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation1805_ETC(), NSNPVariationHelper::x_CommonConvertFeat(), CVariationUtilities::x_FixAlleles(), variation_ref::CVariationUtil::x_ProtToPrecursor(), CVariationUtilities::x_SetReference(), CVariationNormalization_base< T >::x_Shift(), variation_ref::CHgvsParser::x_unwrap_iff_singleton(), CModifySeqId::x_UpdateVariation(), and CReportTrim::x_UpdateVariation().

SetData() [2/2]

CVariation_ref_Base::TData & CVariation_ref_Base::SetData ( void  )

inline

Assign a value to Data data member.

Returns

Reference to the data value.

Definition at line 3477 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Data, and CVariation_ref_Base::ResetData().

Referenced by CVariation_ref::SetCNV(), CVariation_ref::SetComplex(), CVariation_ref::SetDeletion(), CVariation_ref::SetDeletionInsertion(), CVariation_ref::SetDuplication(), CVariation_ref::SetEversion(), CVariation_ref::SetGain(), CVariation_ref::SetIdentity(), CVariation_ref::SetInsertion(), CVariation_ref::SetInversion(), CVariation_ref::SetLoss(), CVariation_ref::SetMicrosatellite(), CVariation_ref::SetMissense(), CVariation_ref::SetMNP(), CVariation_ref::SetOther(), CVariation_ref::SetSNV(), CVariation_ref::SetTranslocation(), CVariation_ref::SetUniparentalDisomy(), and CVariation_ref::SetUnknown().

SetDefaultAction()

void CDelta_item_Base::SetDefaultAction ( void  )

inline

Assign default value to Action data member.

Definition at line 621 of file Delta_item_.hpp.

References CDelta_item_Base::ResetAction().

SetDelta()

CVariation_inst_Base::TDelta & CVariation_inst_Base::SetDelta ( void  )

inline

Assign a value to Delta data member.

Returns

Reference to the data value.

Definition at line 343 of file Variation_inst_.hpp.

References CVariation_inst_Base::m_Delta, and CVariation_inst_Base::m_set_State.

Referenced by variation_ref::CVariationUtil::AdjustDelinsToInterval(), variation::CVariationUtil::ChangeToDelins(), variation_ref::CVariationUtil::ChangeToDelins(), variation::CVariationUtil::FlipStrand(), g_CreateDeletion(), CNormalizeVariant::NormalizeIdentityInstance(), CVariationNormalization_base< CVariationNormalizationRight >::ResetFullyShifted(), s_AddDeleteDeltaItem(), variation::CVariationUtil::s_AddInstOffsetsFromPlacementOffsets(), CVariation_ref::SetCNV(), CVariation_ref::SetDeletion(), CVariation_ref::SetDeletionInsertion(), CVariation_ref::SetEversion(), CVariation_ref::SetGain(), CVariation_ref::SetInsertion(), CVariation_ref::SetInversion(), CVariation_ref::SetLoss(), CVariation_ref::SetMicrosatellite(), CVariation_ref::SetMNP(), CVariation_ref::SetSNV(), CVariation_ref::SetTranslocation(), variation::CVariationUtil::x_AdjustDelinsToInterval(), CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_ETC(), variation_ref::CHgvsParser::x_conversion(), variation::CHgvsParser::x_conversion(), variation_ref::CHgvsParser::x_deletion(), variation::CHgvsParser::x_deletion(), variation_ref::CHgvsParser::x_delins(), variation_ref::CHgvsParser::x_duplication(), variation::CHgvsParser::x_duplication(), variation_ref::CHgvsParser::x_expr2(), variation::CHgvsParser::x_expr2(), variation::CHgvsParser::x_expr3(), CVariationUtilities::x_FixAlleles(), variation_ref::CHgvsParser::x_identity(), variation::CVariationUtil::x_InferNAfromAA(), variation_ref::CHgvsParser::x_insertion(), variation::CHgvsParser::x_insertion(), variation::CHgvsParser::x_no_change(), variation_ref::CHgvsParser::x_nuc_inv(), variation::CHgvsParser::x_nuc_inv(), variation_ref::CHgvsParser::x_nuc_subst(), variation::CHgvsParser::x_nuc_subst(), variation_ref::CHgvsParser::x_prot_ext(), variation::CHgvsParser::x_prot_ext(), variation_ref::CHgvsParser::x_prot_missense(), variation::CHgvsParser::x_prot_missense(), variation_ref::CVariationUtil::x_ProtToPrecursor(), CVariationUtilities::x_SetReference(), CVariationNormalization_base< T >::x_Shift(), variation_ref::CHgvsParser::x_translocation(), variation::CHgvsParser::x_translocation(), CVcfReader::xAssignVariantDelins(), and CVcfReader::xAssignVariantIns().

SetDescription() [1/6]

void CVariation_ref_Base::C_E_Somatic_origin::C_Condition::SetDescription ( const TDescription &  value )

inline

Assign a value to Description data member.

Parameters

value

Value to assign

Definition at line 2779 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Description, CVariation_ref_Base::m_set_State, and rapidjson::value.

SetDescription() [2/6]

void CVariation_ref_Base::SetDescription ( const TDescription &  value )

inline

Assign a value to Description data member.

Parameters

value

Value to assign

Definition at line 3053 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Description, CVariation_ref_Base::m_set_State, and rapidjson::value.

SetDescription() [3/6]

void CVariation_ref_Base::C_E_Somatic_origin::C_Condition::SetDescription ( TDescription &&  value )

inline

Definition at line 2786 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Description, CVariation_ref_Base::m_set_State, and rapidjson::value.

SetDescription() [4/6]

void CVariation_ref_Base::SetDescription ( CVariation_ref_Base::TDescription &&  value )

inline

Definition at line 3060 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Description, CVariation_ref_Base::m_set_State, and rapidjson::value.

SetDescription() [5/6]

CVariation_ref_Base::C_E_Somatic_origin::C_Condition::TDescription & CVariation_ref_Base::C_E_Somatic_origin::C_Condition::SetDescription ( void  )

inline

Assign a value to Description data member.

Returns

Reference to the data value.

Definition at line 2793 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetDescription(), CVariation_ref_Base::m_Description, CVariation_ref_Base::m_set_State, and CSerialObject::UnassignedString().

SetDescription() [6/6]

CVariation_ref_Base::TDescription & CVariation_ref_Base::SetDescription ( void  )

inline

Assign a value to Description data member.

Returns

Reference to the data value.

Definition at line 3067 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetDescription(), CVariation_ref_Base::m_Description, CVariation_ref_Base::m_set_State, and CSerialObject::UnassignedString().

SetEffect() [1/2]

void CVariantProperties_Base::SetEffect ( CVariantProperties_Base::TEffect  value )

inline

Assign a value to Effect data member.

Parameters

value

Value to assign

Definition at line 1133 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Effect, CVariantProperties_Base::m_set_State, and rapidjson::value.

Referenced by NSNPVariationHelper::DecodeBitfield(), and variation_ref::CVariationUtil::x_SetVariantProperties().

SetEffect() [2/2]

CVariantProperties_Base::TEffect & CVariantProperties_Base::SetEffect ( void  )

inline

Assign a value to Effect data member.

Returns

Reference to the data value.

Definition at line 1140 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetEffect(), CVariantProperties_Base::m_Effect, CVariantProperties_Base::m_set_State, and CSerialObject::UnassignedByte().

SetExt() [1/2]

void CVariation_ref_Base::SetExt

(

CVariation_ref_Base::TExt &

value

)

Assign a value to Ext data member.

Parameters

value

Reference to value.

Definition at line 859 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Ext, and rapidjson::value.

SetExt() [2/2]

CVariation_ref_Base::TExt & CVariation_ref_Base::SetExt

(

void

)

Assign a value to Ext data member.

Returns

Reference to the data value.

Definition at line 864 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Ext.

Referenced by CVariation_ref::SetExt().

SetExt_locs()

CVariation_ref_Base::TExt_locs & CVariation_ref_Base::SetExt_locs ( void  )

inline

Assign a value to Ext_locs data member.

Returns

Reference to the data value.

Definition at line 3550 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Ext_locs, and CVariation_ref_Base::m_set_State.

Referenced by CVariation_ref::SetExt_locs().

SetFlags() [1/2]

void CPopulation_data_Base::SetFlags ( CPopulation_data_Base::TFlags  value )

inline

Assign a value to Flags data member.

Parameters

value

Value to assign

Definition at line 612 of file Population_data_.hpp.

References CPopulation_data_Base::m_Flags, CPopulation_data_Base::m_set_State, and rapidjson::value.

SetFlags() [2/2]

CPopulation_data_Base::TFlags & CPopulation_data_Base::SetFlags ( void  )

inline

Assign a value to Flags data member.

Returns

Reference to the data value.

Definition at line 619 of file Population_data_.hpp.

References CPopulation_data_Base::IsSetFlags(), CPopulation_data_Base::m_Flags, CPopulation_data_Base::m_set_State, and CSerialObject::UnassignedByte().

SetFrameshift() [1/2]

void CVariation_ref_Base::C_E_Consequence::SetFrameshift

(

TFrameshift &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 509 of file Variation_ref_.cpp.

References CObject::AddReference(), CVariation_ref_Base::C_E_Consequence::e_Frameshift, CVariation_ref_Base::C_E_Consequence::m_choice, CVariation_ref_Base::C_E_Consequence::m_object, CVariation_ref_Base::C_E_Consequence::ResetSelection(), and rapidjson::value.

SetFrameshift() [2/2]

CVariation_ref_Base::C_E_Consequence::TFrameshift & CVariation_ref_Base::C_E_Consequence::SetFrameshift

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 503 of file Variation_ref_.cpp.

References CVariation_ref_Base::C_E_Consequence::e_Frameshift, eDoNotResetVariant, CVariation_ref_Base::C_E_Consequence::m_object, and CVariation_ref_Base::C_E_Consequence::Select().

SetFrequency_based_validation() [1/2]

void CVariantProperties_Base::SetFrequency_based_validation ( CVariantProperties_Base::TFrequency_based_validation  value )

inline

Assign a value to Frequency_based_validation data member.

Parameters

value

Value to assign

Definition at line 1274 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Frequency_based_validation, CVariantProperties_Base::m_set_State, and rapidjson::value.

Referenced by NSNPVariationHelper::DecodeBitfield().

SetFrequency_based_validation() [2/2]

CVariantProperties_Base::TFrequency_based_validation & CVariantProperties_Base::SetFrequency_based_validation ( void  )

inline

Assign a value to Frequency_based_validation data member.

Returns

Reference to the data value.

Definition at line 1281 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetFrequency_based_validation(), CVariantProperties_Base::m_Frequency_based_validation, CVariantProperties_Base::m_set_State, and CSerialObject::UnassignedByte().

SetGene_location() [1/2]

void CVariantProperties_Base::SetGene_location ( CVariantProperties_Base::TGene_location  value )

inline

Assign a value to Gene_location data member.

Parameters

value

Value to assign

Definition at line 1086 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Gene_location, CVariantProperties_Base::m_set_State, and rapidjson::value.

Referenced by NSNPVariationHelper::DecodeBitfield(), variation_ref::CVariationUtil::SetVariantProperties(), and variation_ref::CVariationUtil::x_SetVariantPropertiesForIntronic().

SetGene_location() [2/2]

CVariantProperties_Base::TGene_location & CVariantProperties_Base::SetGene_location ( void  )

inline

Assign a value to Gene_location data member.

Returns

Reference to the data value.

Definition at line 1093 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetGene_location(), CVariantProperties_Base::m_Gene_location, CVariantProperties_Base::m_set_State, and CSerialObject::UnassignedByte().

SetGenotype() [1/2]

void CVariantProperties_Base::SetGenotype ( CVariantProperties_Base::TGenotype  value )

inline

Assign a value to Genotype data member.

Parameters

value

Value to assign

Definition at line 1321 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Genotype, CVariantProperties_Base::m_set_State, and rapidjson::value.

Referenced by NSNPVariationHelper::DecodeBitfield().

SetGenotype() [2/2]

CVariantProperties_Base::TGenotype & CVariantProperties_Base::SetGenotype ( void  )

inline

Assign a value to Genotype data member.

Returns

Reference to the data value.

Definition at line 1328 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetGenotype(), CVariantProperties_Base::m_Genotype, CVariantProperties_Base::m_set_State, and CSerialObject::UnassignedByte().

SetGenotype_frequency() [1/2]

void CPopulation_data_Base::SetGenotype_frequency ( CPopulation_data_Base::TGenotype_frequency  value )

inline

Assign a value to Genotype_frequency data member.

Parameters

value

Value to assign

Definition at line 446 of file Population_data_.hpp.

References CPopulation_data_Base::m_Genotype_frequency, CPopulation_data_Base::m_set_State, and rapidjson::value.

SetGenotype_frequency() [2/2]

CPopulation_data_Base::TGenotype_frequency & CPopulation_data_Base::SetGenotype_frequency ( void  )

inline

Assign a value to Genotype_frequency data member.

Returns

Reference to the data value.

Definition at line 453 of file Population_data_.hpp.

References CPopulation_data_Base::IsSetGenotype_frequency(), CPopulation_data_Base::m_Genotype_frequency, CPopulation_data_Base::m_set_State, and CSerialObject::UnassignedByte().

SetId() [1/4]

void CExt_loc_Base::SetId

(

CExt_loc_Base::TId &

value

)

Assign a value to Id data member.

Parameters

value

Reference to value.

Definition at line 61 of file Ext_loc_.cpp.

References CExt_loc_Base::m_Id, and rapidjson::value.

SetId() [2/4]

void CVariation_ref_Base::SetId

(

CVariation_ref_Base::TId &

value

)

Assign a value to Id data member.

Parameters

value

Reference to value.

Definition at line 683 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Id, and rapidjson::value.

SetId() [3/4]

CExt_loc_Base::TId & CExt_loc_Base::SetId ( void  )

inline

Assign a value to Id data member.

Returns

Reference to the data value.

Definition at line 220 of file Ext_loc_.hpp.

References CExt_loc_Base::m_Id, and CExt_loc_Base::ResetId().

SetId() [4/4]

CVariation_ref_Base::TId & CVariation_ref_Base::SetId

(

void

)

Assign a value to Id data member.

Returns

Reference to the data value.

Definition at line 688 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Id.

SetInstance() [1/2]

void CVariation_ref_Base::C_Data::SetInstance

(

TInstance &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 269 of file Variation_ref_.cpp.

References CObject::AddReference(), CVariation_ref_Base::C_Data::e_Instance, CVariation_ref_Base::C_Data::m_choice, CVariation_ref_Base::C_Data::m_object, CVariation_ref_Base::C_Data::ResetSelection(), and rapidjson::value.

SetInstance() [2/2]

CVariation_ref_Base::C_Data::TInstance & CVariation_ref_Base::C_Data::SetInstance

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 263 of file Variation_ref_.cpp.

References CVariation_ref_Base::C_Data::e_Instance, eDoNotResetVariant, CVariation_ref_Base::C_Data::m_object, and CVariation_ref_Base::C_Data::Select().

Referenced by CVariation_ref::SetCNV(), CVariation_ref::SetDeletion(), CVariation_ref::SetDeletionInsertion(), CVariation_ref::SetDuplication(), CVariation_ref::SetEversion(), CVariation_ref::SetGain(), CVariation_ref::SetIdentity(), CVariation_ref::SetInsertion(), CVariation_ref::SetInversion(), CVariation_ref::SetLoss(), CVariation_ref::SetMicrosatellite(), CVariation_ref::SetMissense(), CVariation_ref::SetMNP(), CVariation_ref::SetSNV(), CVariation_ref::SetTranslocation(), and CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data().

SetIs_ancestral_allele() [1/4]

void CVariantProperties_Base::SetIs_ancestral_allele ( CVariantProperties_Base::TIs_ancestral_allele  value )

inline

Assign a value to Is_ancestral_allele data member.

Parameters

value

Value to assign

Definition at line 1675 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Is_ancestral_allele, CVariantProperties_Base::m_set_State, and rapidjson::value.

Referenced by CVariation_ref::PostRead(), and CVariation_ref::SetIs_ancestral_allele().

SetIs_ancestral_allele() [2/4]

void CVariation_ref_Base::SetIs_ancestral_allele ( CVariation_ref_Base::TIs_ancestral_allele  value )

inline

Assign a value to Is_ancestral_allele data member.

Parameters

value

Value to assign

Definition at line 3416 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Is_ancestral_allele, CVariation_ref_Base::m_set_State, and rapidjson::value.

SetIs_ancestral_allele() [3/4]

CVariantProperties_Base::TIs_ancestral_allele & CVariantProperties_Base::SetIs_ancestral_allele ( void  )

inline

Assign a value to Is_ancestral_allele data member.

Returns

Reference to the data value.

Definition at line 1682 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetIs_ancestral_allele(), CVariantProperties_Base::m_Is_ancestral_allele, CVariantProperties_Base::m_set_State, and CSerialObject::UnassignedByte().

SetIs_ancestral_allele() [4/4]

CVariation_ref_Base::TIs_ancestral_allele & CVariation_ref_Base::SetIs_ancestral_allele ( void  )

inline

Assign a value to Is_ancestral_allele data member.

Returns

Reference to the data value.

Definition at line 3423 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetIs_ancestral_allele(), CVariation_ref_Base::m_Is_ancestral_allele, CVariation_ref_Base::m_set_State, and CSerialObject::UnassignedByte().

SetLiteral() [1/2]

void CDelta_item_Base::C_Seq::SetLiteral

(

TLiteral &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 116 of file Delta_item_.cpp.

References CObject::AddReference(), and rapidjson::value.

SetLiteral() [2/2]

CDelta_item_Base::C_Seq::TLiteral & CDelta_item_Base::C_Seq::SetLiteral

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 110 of file Delta_item_.cpp.

References eDoNotResetVariant.

Referenced by CDelta_item::SetInsertion().

SetLoc() [1/2]

void CDelta_item_Base::C_Seq::SetLoc

(

TLoc &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 138 of file Delta_item_.cpp.

References CObject::AddReference(), and rapidjson::value.

SetLoc() [2/2]

CDelta_item_Base::C_Seq::TLoc & CDelta_item_Base::C_Seq::SetLoc

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 132 of file Delta_item_.cpp.

References eDoNotResetVariant.

Referenced by CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_delta_E_E_seq_ETC().

SetLocation() [1/4]

void CExt_loc_Base::SetLocation

(

CExt_loc_Base::TLocation &

value

)

Assign a value to Location data member.

Parameters

value

Reference to value.

Definition at line 75 of file Ext_loc_.cpp.

References CExt_loc_Base::m_Location, and rapidjson::value.

SetLocation() [2/4]

void CVariation_ref_Base::SetLocation

(

CVariation_ref_Base::TLocation &

value

)

Assign a value to Location data member.

Parameters

value

Reference to value.

Definition at line 836 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Location, and rapidjson::value.

SetLocation() [3/4]

CExt_loc_Base::TLocation & CExt_loc_Base::SetLocation ( void  )

inline

Assign a value to Location data member.

Returns

Reference to the data value.

Definition at line 250 of file Ext_loc_.hpp.

References CExt_loc_Base::m_Location, and CExt_loc_Base::ResetLocation().

SetLocation() [4/4]

CVariation_ref_Base::TLocation & CVariation_ref_Base::SetLocation

(

void

)

Assign a value to Location data member.

Returns

Reference to the data value.

Definition at line 841 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Location.

Referenced by CVariation_ref::SetLocation().

SetLoss_of_heterozygosity() [1/2]

void CVariation_ref_Base::C_E_Consequence::SetLoss_of_heterozygosity

(

TLoss_of_heterozygosity &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 531 of file Variation_ref_.cpp.

References CObject::AddReference(), CVariation_ref_Base::C_E_Consequence::e_Loss_of_heterozygosity, CVariation_ref_Base::C_E_Consequence::m_choice, CVariation_ref_Base::C_E_Consequence::m_object, CVariation_ref_Base::C_E_Consequence::ResetSelection(), and rapidjson::value.

SetLoss_of_heterozygosity() [2/2]

CVariation_ref_Base::C_E_Consequence::TLoss_of_heterozygosity & CVariation_ref_Base::C_E_Consequence::SetLoss_of_heterozygosity

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 525 of file Variation_ref_.cpp.

References CVariation_ref_Base::C_E_Consequence::e_Loss_of_heterozygosity, eDoNotResetVariant, CVariation_ref_Base::C_E_Consequence::m_object, and CVariation_ref_Base::C_E_Consequence::Select().

SetMap_weight() [1/2]

void CVariantProperties_Base::SetMap_weight ( CVariantProperties_Base::TMap_weight  value )

inline

Assign a value to Map_weight data member.

Parameters

value

Value to assign

Definition at line 1227 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Map_weight, CVariantProperties_Base::m_set_State, and rapidjson::value.

SetMap_weight() [2/2]

CVariantProperties_Base::TMap_weight & CVariantProperties_Base::SetMap_weight ( void  )

inline

Assign a value to Map_weight data member.

Returns

Reference to the data value.

Definition at line 1234 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetMap_weight(), CVariantProperties_Base::m_Map_weight, CVariantProperties_Base::m_set_State, and CSerialObject::UnassignedByte().

SetMapping() [1/2]

void CVariantProperties_Base::SetMapping ( CVariantProperties_Base::TMapping  value )

inline

Assign a value to Mapping data member.

Parameters

value

Value to assign

Definition at line 1180 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Mapping, CVariantProperties_Base::m_set_State, and rapidjson::value.

Referenced by NSNPVariationHelper::DecodeBitfield().

SetMapping() [2/2]

CVariantProperties_Base::TMapping & CVariantProperties_Base::SetMapping ( void  )

inline

Assign a value to Mapping data member.

Returns

Reference to the data value.

Definition at line 1187 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetMapping(), CVariantProperties_Base::m_Mapping, CVariantProperties_Base::m_set_State, and CSerialObject::UnassignedByte().

SetMethod()

CVariation_ref_Base::TMethod & CVariation_ref_Base::SetMethod ( void  )

inline

Assign a value to Method data member.

Returns

Reference to the data value.

Definition at line 3122 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Method, and CVariation_ref_Base::m_set_State.

SetMultiplier() [1/2]

void CDelta_item_Base::SetMultiplier ( CDelta_item_Base::TMultiplier  value )

inline

Assign a value to Multiplier data member.

Parameters

value

Value to assign

Definition at line 562 of file Delta_item_.hpp.

References CDelta_item_Base::m_Multiplier, CDelta_item_Base::m_set_State, and rapidjson::value.

Referenced by CIntronOffsetHelper::x_SetDeltaItemOffset().

SetMultiplier() [2/2]

CDelta_item_Base::TMultiplier & CDelta_item_Base::SetMultiplier ( void  )

inline

Assign a value to Multiplier data member.

Returns

Reference to the data value.

Definition at line 569 of file Delta_item_.hpp.

References CDelta_item_Base::IsSetMultiplier(), CDelta_item_Base::m_Multiplier, CDelta_item_Base::m_set_State, and CSerialObject::UnassignedByte().

Referenced by CDelta_item::SetDuplication().

SetMultiplier_fuzz() [1/2]

void CDelta_item_Base::SetMultiplier_fuzz

(

CDelta_item_Base::TMultiplier_fuzz &

value

)

Assign a value to Multiplier_fuzz data member.

Parameters

value

Reference to value.

Definition at line 209 of file Delta_item_.cpp.

References CDelta_item_Base::m_Multiplier_fuzz, and rapidjson::value.

Referenced by variation::CVariationUtil::ChangeToDelins(), and variation_ref::CVariationUtil::ChangeToDelins().

SetMultiplier_fuzz() [2/2]

CDelta_item_Base::TMultiplier_fuzz & CDelta_item_Base::SetMultiplier_fuzz

(

void

)

Assign a value to Multiplier_fuzz data member.

Returns

Reference to the data value.

Definition at line 214 of file Delta_item_.cpp.

References CDelta_item_Base::m_Multiplier_fuzz.

SetName() [1/6]

void CVariation_ref_Base::C_Data::C_Set::SetName ( const TName &  value )

inline

Assign a value to Name data member.

Parameters

value

Value to assign

Definition at line 2356 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Name, CVariation_ref_Base::m_set_State, and rapidjson::value.

Referenced by variation::CVariationUtil::x_AsVariation_ref().

SetName() [2/6]

void CVariation_ref_Base::SetName ( const TName &  value )

inline

Assign a value to Name data member.

Parameters

value

Value to assign

Definition at line 2981 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Name, CVariation_ref_Base::m_set_State, and rapidjson::value.

SetName() [3/6]

void CVariation_ref_Base::C_Data::C_Set::SetName ( TName &&  value )

inline

Definition at line 2363 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Name, CVariation_ref_Base::m_set_State, and rapidjson::value.

SetName() [4/6]

void CVariation_ref_Base::SetName ( CVariation_ref_Base::TName &&  value )

inline

Definition at line 2988 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Name, CVariation_ref_Base::m_set_State, and rapidjson::value.

SetName() [5/6]

CVariation_ref_Base::C_Data::C_Set::TName & CVariation_ref_Base::C_Data::C_Set::SetName ( void  )

inline

Assign a value to Name data member.

Returns

Reference to the data value.

Definition at line 2370 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetName(), CVariation_ref_Base::m_Name, CVariation_ref_Base::m_set_State, and CSerialObject::UnassignedString().

SetName() [6/6]

CVariation_ref_Base::TName & CVariation_ref_Base::SetName ( void  )

inline

Assign a value to Name data member.

Returns

Reference to the data value.

Definition at line 2995 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetName(), CVariation_ref_Base::m_Name, CVariation_ref_Base::m_set_State, and CSerialObject::UnassignedString().

SetNote() [1/4]

void CVariation_ref_Base::C_Data::SetNote

(

const TNote &

value

)

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 251 of file Variation_ref_.cpp.

References CVariation_ref_Base::C_Data::e_Note, eDoNotResetVariant, CVariation_ref_Base::C_Data::m_string, CVariation_ref_Base::C_Data::Select(), and rapidjson::value.

SetNote() [2/4]

void CVariation_ref_Base::C_E_Consequence::SetNote

(

const TNote &

value

)

Select the variant and set its data.

Parameters

value

Variant data.

Definition at line 469 of file Variation_ref_.cpp.

References CVariation_ref_Base::C_E_Consequence::e_Note, eDoNotResetVariant, CVariation_ref_Base::C_E_Consequence::m_string, CVariation_ref_Base::C_E_Consequence::Select(), and rapidjson::value.

SetNote() [3/4]

CVariation_ref_Base::C_Data::TNote & CVariation_ref_Base::C_Data::SetNote ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 2436 of file Variation_ref_.hpp.

References CVariation_ref_Base::C_Data::e_Note, eDoNotResetVariant, CVariation_ref_Base::C_Data::m_string, and CVariation_ref_Base::C_Data::Select().

SetNote() [4/4]

CVariation_ref_Base::C_E_Consequence::TNote & CVariation_ref_Base::C_E_Consequence::SetNote ( void  )

inline

Select the variant.

Returns

Reference to the variant data.

Definition at line 2733 of file Variation_ref_.hpp.

References CVariation_ref_Base::C_Data::e_Note, eDoNotResetVariant, CVariation_ref_Base::C_Data::m_string, and CVariation_ref_Base::C_Data::Select().

SetObject_id()

CVariation_ref_Base::C_E_Somatic_origin::C_Condition::TObject_id & CVariation_ref_Base::C_E_Somatic_origin::C_Condition::SetObject_id ( void  )

inline

Assign a value to Object_id data member.

Returns

Reference to the data value.

Definition at line 2823 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

SetObservation() [1/2]

void CVariation_inst_Base::SetObservation ( CVariation_inst_Base::TObservation  value )

inline

Assign a value to Observation data member.

Parameters

value

Value to assign

Definition at line 378 of file Variation_inst_.hpp.

References CVariation_inst_Base::m_Observation, CVariation_inst_Base::m_set_State, and rapidjson::value.

Referenced by CNormalizeVariant::NormalizeIdentityInstance(), CVariationNormalization_base< CVariationNormalizationRight >::ResetFullyShifted(), CVariationUtilities::x_FixAlleles(), variation::CVariationUtil::x_InferNAfromAA(), variation_ref::CVariationUtil::x_ProtToPrecursor(), CVariationUtilities::x_SetReference(), and CVcfReader::xAssignVariationAlleleSet().

SetObservation() [2/2]

CVariation_inst_Base::TObservation & CVariation_inst_Base::SetObservation ( void  )

inline

Assign a value to Observation data member.

Returns

Reference to the data value.

Definition at line 385 of file Variation_inst_.hpp.

References CVariation_inst_Base::IsSetObservation(), CVariation_inst_Base::m_Observation, CVariation_inst_Base::m_set_State, and CSerialObject::UnassignedByte().

SetOther_ids()

CVariation_ref_Base::TOther_ids & CVariation_ref_Base::SetOther_ids ( void  )

inline

Assign a value to Other_ids data member.

Returns

Reference to the data value.

Definition at line 2953 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Other_ids, and CVariation_ref_Base::m_set_State.

SetOther_validation() [1/2]

void CVariantProperties_Base::SetOther_validation ( CVariantProperties_Base::TOther_validation  value )

inline

Assign a value to Other_validation data member.

Parameters

value

Value to assign

Definition at line 1487 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Other_validation, CVariantProperties_Base::m_set_State, and rapidjson::value.

Referenced by CVariation_ref::PostRead(), and CVariation_ref::SetValidated().

SetOther_validation() [2/2]

CVariantProperties_Base::TOther_validation & CVariantProperties_Base::SetOther_validation ( void  )

inline

Assign a value to Other_validation data member.

Returns

Reference to the data value.

Definition at line 1494 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetOther_validation(), CVariantProperties_Base::m_Other_validation, CVariantProperties_Base::m_set_State, and CSerialObject::UnassignedByte().

SetParent_id() [1/2]

void CVariation_ref_Base::SetParent_id

(

CVariation_ref_Base::TParent_id &

value

)

Assign a value to Parent_id data member.

Parameters

value

Reference to value.

Definition at line 700 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Parent_id, and rapidjson::value.

SetParent_id() [2/2]

CVariation_ref_Base::TParent_id & CVariation_ref_Base::SetParent_id

(

void

)

Assign a value to Parent_id data member.

Returns

Reference to the data value.

Definition at line 705 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Parent_id.

SetPhase() [1/2]

void CVariation_ref_Base::C_E_Consequence::C_Frameshift::SetPhase ( TPhase  value )

inline

Assign a value to Phase data member.

Parameters

value

Value to assign

Definition at line 2507 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State, and rapidjson::value.

SetPhase() [2/2]

CVariation_ref_Base::C_E_Consequence::C_Frameshift::TPhase & CVariation_ref_Base::C_E_Consequence::C_Frameshift::SetPhase ( void  )

inline

Assign a value to Phase data member.

Returns

Reference to the data value.

Definition at line 2514 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State, and CSerialObject::UnassignedByte().

SetPhenotype()

CVariation_ref_Base::TPhenotype & CVariation_ref_Base::SetPhenotype ( void  )

inline

Assign a value to Phenotype data member.

Returns

Reference to the data value.

Definition at line 3097 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Phenotype, and CVariation_ref_Base::m_set_State.

SetPopulation() [1/3]

void CPopulation_data_Base::SetPopulation ( const TPopulation &  value )

inline

Assign a value to Population data member.

Parameters

value

Value to assign

Definition at line 392 of file Population_data_.hpp.

References CPopulation_data_Base::m_Population, CPopulation_data_Base::m_set_State, and rapidjson::value.

SetPopulation() [2/3]

void CPopulation_data_Base::SetPopulation ( CPopulation_data_Base::TPopulation &&  value )

inline

Definition at line 399 of file Population_data_.hpp.

References CPopulation_data_Base::m_Population, CPopulation_data_Base::m_set_State, and rapidjson::value.

SetPopulation() [3/3]

CPopulation_data_Base::TPopulation & CPopulation_data_Base::SetPopulation ( void  )

inline

Assign a value to Population data member.

Returns

Reference to the data value.

Definition at line 406 of file Population_data_.hpp.

References CPopulation_data_Base::IsSetPopulation(), CPopulation_data_Base::m_Population, CPopulation_data_Base::m_set_State, and CSerialObject::UnassignedString().

SetPopulation_data()

CVariation_ref_Base::TPopulation_data & CVariation_ref_Base::SetPopulation_data ( void  )

inline

Assign a value to Population_data data member.

Returns

Reference to the data value.

Definition at line 3147 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_Population_data, and CVariation_ref_Base::m_set_State.

SetProject_data()

CVariantProperties_Base::TProject_data & CVariantProperties_Base::SetProject_data ( void  )

inline

Assign a value to Project_data data member.

Returns

Reference to the data value.

Definition at line 1358 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Project_data, and CVariantProperties_Base::m_set_State.

SetPub() [1/2]

void CVariation_ref_Base::SetPub

(

CVariation_ref_Base::TPub &

value

)

Assign a value to Pub data member.

Parameters

value

Reference to value.

Definition at line 799 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Pub, and rapidjson::value.

SetPub() [2/2]

CVariation_ref_Base::TPub & CVariation_ref_Base::SetPub

(

void

)

Assign a value to Pub data member.

Returns

Reference to the data value.

Definition at line 804 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Pub.

SetQuality_check() [1/2]

void CVariantProperties_Base::SetQuality_check ( CVariantProperties_Base::TQuality_check  value )

inline

Assign a value to Quality_check data member.

Parameters

value

Value to assign

Definition at line 1393 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Quality_check, CVariantProperties_Base::m_set_State, and rapidjson::value.

Referenced by NSNPVariationHelper::DecodeBitfield().

SetQuality_check() [2/2]

CVariantProperties_Base::TQuality_check & CVariantProperties_Base::SetQuality_check ( void  )

inline

Assign a value to Quality_check data member.

Returns

Reference to the data value.

Definition at line 1400 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetQuality_check(), CVariantProperties_Base::m_Quality_check, CVariantProperties_Base::m_set_State, and CSerialObject::UnassignedByte().

SetReference() [1/3]

void CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::SetReference ( const TReference &  value )

inline

Assign a value to Reference data member.

Parameters

value

Value to assign

Definition at line 2594 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State, and rapidjson::value.

SetReference() [2/3]

void CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::SetReference ( TReference &&  value )

inline

Definition at line 2601 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State, and rapidjson::value.

SetReference() [3/3]

CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::TReference & CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::SetReference ( void  )

inline

Assign a value to Reference data member.

Returns

Reference to the data value.

Definition at line 2608 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State, and CSerialObject::UnassignedString().

SetResource_link() [1/2]

void CVariantProperties_Base::SetResource_link ( CVariantProperties_Base::TResource_link  value )

inline

Assign a value to Resource_link data member.

Parameters

value

Value to assign

Definition at line 1039 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_Resource_link, CVariantProperties_Base::m_set_State, and rapidjson::value.

Referenced by NSNPVariationHelper::DecodeBitfield().

SetResource_link() [2/2]

CVariantProperties_Base::TResource_link & CVariantProperties_Base::SetResource_link ( void  )

inline

Assign a value to Resource_link data member.

Returns

Reference to the data value.

Definition at line 1046 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetResource_link(), CVariantProperties_Base::m_Resource_link, CVariantProperties_Base::m_set_State, and CSerialObject::UnassignedByte().

SetSample_id() [1/2]

void CVariation_ref_Base::SetSample_id

(

CVariation_ref_Base::TSample_id &

value

)

Assign a value to Sample_id data member.

Parameters

value

Reference to value.

Definition at line 717 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Sample_id, and rapidjson::value.

SetSample_id() [2/2]

CVariation_ref_Base::TSample_id & CVariation_ref_Base::SetSample_id

(

void

)

Assign a value to Sample_id data member.

Returns

Reference to the data value.

Definition at line 722 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Sample_id.

SetSample_ids()

CPopulation_data_Base::TSample_ids & CPopulation_data_Base::SetSample_ids ( void  )

inline

Assign a value to Sample_ids data member.

Returns

Reference to the data value.

Definition at line 530 of file Population_data_.hpp.

References CPopulation_data_Base::m_Sample_ids, and CPopulation_data_Base::m_set_State.

SetSeq() [1/2]

void CDelta_item_Base::SetSeq

(

CDelta_item_Base::TSeq &

value

)

Assign a value to Seq data member.

Parameters

value

Reference to value.

Definition at line 192 of file Delta_item_.cpp.

References CDelta_item_Base::m_Seq, and rapidjson::value.

Referenced by variation::CVariationUtil::ChangeToDelins(), variation_ref::CVariationUtil::ChangeToDelins(), variation::CVariationUtil::FlipStrand(), CVariationNormalization_base< CVariationNormalizationRight >::ResetFullyShifted(), variation_ref::CVariationUtil::s_Remap(), CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_delta_E_E_ETC(), CVariationUtilities::x_FixAlleles(), CIntronOffsetHelper::x_SetDeltaItemOffset(), CVariationUtilities::x_SetReference(), and CVariationNormalization_base< T >::x_Shift().

SetSeq() [2/2]

CDelta_item_Base::TSeq & CDelta_item_Base::SetSeq

(

void

)

Assign a value to Seq data member.

Returns

Reference to the data value.

Definition at line 197 of file Delta_item_.cpp.

References CDelta_item_Base::m_Seq.

Referenced by CDelta_item::SetDeletion(), CDelta_item::SetDuplication(), and CDelta_item::SetInsertion().

SetSet() [1/2]

void CVariation_ref_Base::C_Data::SetSet

(

TSet &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 291 of file Variation_ref_.cpp.

References CObject::AddReference(), CVariation_ref_Base::C_Data::e_Set, CVariation_ref_Base::C_Data::m_choice, CVariation_ref_Base::C_Data::m_object, CVariation_ref_Base::C_Data::ResetSelection(), and rapidjson::value.

SetSet() [2/2]

CVariation_ref_Base::C_Data::TSet & CVariation_ref_Base::C_Data::SetSet

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 285 of file Variation_ref_.cpp.

References CVariation_ref_Base::C_Data::e_Set, eDoNotResetVariant, CVariation_ref_Base::C_Data::m_object, and CVariation_ref_Base::C_Data::Select().

Referenced by CVariation_ref::SetOther(), and CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data().

SetSomatic_origin()

CVariation_ref_Base::TSomatic_origin & CVariation_ref_Base::SetSomatic_origin ( void  )

inline

Assign a value to Somatic_origin data member.

Returns

Reference to the data value.

Definition at line 3596 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State, and CVariation_ref_Base::m_Somatic_origin.

Referenced by CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_E1804_ETC(), and CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation1805_ETC().

SetSource() [1/5]

void CPhenotype_Base::SetSource ( const TSource &  value )

inline

Assign a value to Source data member.

Parameters

value

Value to assign

Definition at line 316 of file Phenotype_.hpp.

References CPhenotype_Base::m_set_State, CPhenotype_Base::m_Source, and rapidjson::value.

SetSource() [2/5]

void CPhenotype_Base::SetSource ( CPhenotype_Base::TSource &&  value )

inline

Definition at line 323 of file Phenotype_.hpp.

References CPhenotype_Base::m_set_State, CPhenotype_Base::m_Source, and rapidjson::value.

SetSource() [3/5]

void CVariation_ref_Base::C_E_Somatic_origin::SetSource

(

TSource &

value

)

Assign a value to Source data member.

Parameters

value

Reference to value.

Definition at line 619 of file Variation_ref_.cpp.

References CSubSource_Base::Reset(), and rapidjson::value.

SetSource() [4/5]

CPhenotype_Base::TSource & CPhenotype_Base::SetSource ( void  )

inline

Assign a value to Source data member.

Returns

Reference to the data value.

Definition at line 330 of file Phenotype_.hpp.

References CPhenotype_Base::IsSetSource(), CPhenotype_Base::m_set_State, CPhenotype_Base::m_Source, and CSerialObject::UnassignedString().

SetSource() [5/5]

CVariation_ref_Base::C_E_Somatic_origin::TSource & CVariation_ref_Base::C_E_Somatic_origin::SetSource

(

void

)

Assign a value to Source data member.

Returns

Reference to the data value.

Definition at line 624 of file Variation_ref_.cpp.

References CSubSource_Base::Reset().

SetSplicing()

void CVariation_ref_Base::C_E_Consequence::SetSplicing ( void  )

inline

Select the variant.

Definition at line 2714 of file Variation_ref_.hpp.

References eDoNotResetVariant, and CVariation_ref_Base::C_Data::Select().

SetSynonyms()

CVariation_ref_Base::TSynonyms & CVariation_ref_Base::SetSynonyms ( void  )

inline

Assign a value to Synonyms data member.

Returns

Reference to the data value.

Definition at line 3025 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State, and CVariation_ref_Base::m_Synonyms.

SetTerm() [1/3]

void CPhenotype_Base::SetTerm ( const TTerm &  value )

inline

Assign a value to Term data member.

Parameters

value

Value to assign

Definition at line 363 of file Phenotype_.hpp.

References CPhenotype_Base::m_set_State, CPhenotype_Base::m_Term, and rapidjson::value.

SetTerm() [2/3]

void CPhenotype_Base::SetTerm ( CPhenotype_Base::TTerm &&  value )

inline

Definition at line 370 of file Phenotype_.hpp.

References CPhenotype_Base::m_set_State, CPhenotype_Base::m_Term, and rapidjson::value.

SetTerm() [3/3]

CPhenotype_Base::TTerm & CPhenotype_Base::SetTerm ( void  )

inline

Assign a value to Term data member.

Returns

Reference to the data value.

Definition at line 377 of file Phenotype_.hpp.

References CPhenotype_Base::IsSetTerm(), CPhenotype_Base::m_set_State, CPhenotype_Base::m_Term, and CSerialObject::UnassignedString().

SetTest() [1/3]

void CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::SetTest ( const TTest &  value )

inline

Assign a value to Test data member.

Parameters

value

Value to assign

Definition at line 2641 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State, and rapidjson::value.

SetTest() [2/3]

void CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::SetTest ( TTest &&  value )

inline

Definition at line 2648 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State, and rapidjson::value.

SetTest() [3/3]

CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::TTest & CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::SetTest ( void  )

inline

Assign a value to Test data member.

Returns

Reference to the data value.

Definition at line 2655 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State, and CSerialObject::UnassignedString().

SetThis()

void CDelta_item_Base::C_Seq::SetThis ( void  )

inline

Select the variant.

Definition at line 507 of file Delta_item_.hpp.

References eDoNotResetVariant.

Referenced by CDelta_item::SetDeletion(), and CDelta_item::SetDuplication().

SetType() [1/4]

void CVariation_inst_Base::SetType ( CVariation_inst_Base::TType  value )

inline

Assign a value to Type data member.

Parameters

value

Value to assign

Definition at line 306 of file Variation_inst_.hpp.

References CVariation_inst_Base::m_set_State, CVariation_inst_Base::m_Type, and rapidjson::value.

Referenced by variation_ref::CVariationUtil::AdjustDelinsToInterval(), variation::CVariationUtil::ChangeToDelins(), variation_ref::CVariationUtil::ChangeToDelins(), g_CreateDeletion(), CNormalizeVariant::NormalizeIdentityInstance(), s_AddDeleteDeltaItem(), CVariation_ref::SetCNV(), CVariation_ref::SetDeletion(), CVariation_ref::SetDuplication(), CVariation_ref::SetEversion(), CVariation_ref::SetGain(), CVariation_ref::SetIdentity(), CVariation_ref::SetInsertion(), CVariation_ref::SetInversion(), CVariation_ref::SetLoss(), CVariation_ref::SetMissense(), CVariation_ref::SetMNP(), CVariation_ref::SetSNV(), CVariation_ref::SetTranslocation(), variation_ref::CHgvsParser::x_conversion(), variation::CHgvsParser::x_conversion(), variation_ref::CHgvsParser::x_deletion(), variation::CHgvsParser::x_deletion(), variation_ref::CHgvsParser::x_delins(), variation_ref::CHgvsParser::x_duplication(), variation::CHgvsParser::x_duplication(), variation::CHgvsParser::x_expr2(), variation::CHgvsParser::x_expr3(), variation_ref::CHgvsParser::x_identity(), variation::CVariationUtil::x_InferNAfromAA(), variation_ref::CHgvsParser::x_insertion(), variation::CHgvsParser::x_insertion(), variation::CHgvsParser::x_no_change(), variation_ref::CHgvsParser::x_nuc_inv(), variation::CHgvsParser::x_nuc_inv(), variation_ref::CHgvsParser::x_nuc_subst(), variation::CHgvsParser::x_nuc_subst(), variation_ref::CHgvsParser::x_prot_ext(), variation::CHgvsParser::x_prot_ext(), variation_ref::CHgvsParser::x_prot_missense(), variation::CHgvsParser::x_prot_missense(), variation_ref::CVariationUtil::x_ProtToPrecursor(), variation_ref::CHgvsParser::x_translocation(), variation::CHgvsParser::x_translocation(), CVcfReader::xAssignVariantDelins(), CVcfReader::xAssignVariantIns(), and CVcfReader::xAssignVariationAlleleSet().

SetType() [2/4]

void CVariation_ref_Base::C_Data::C_Set::SetType ( TType  value )

inline

Assign a value to Type data member.

Parameters

value

Value to assign

Definition at line 2291 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State, and rapidjson::value.

Referenced by CVariation_ref::SetOther(), variation::CVariationUtil::x_AsVariation_ref(), and variation_ref::CHgvsParser::x_list().

SetType() [3/4]

CVariation_inst_Base::TType & CVariation_inst_Base::SetType ( void  )

inline

Assign a value to Type data member.

Returns

Reference to the data value.

Definition at line 313 of file Variation_inst_.hpp.

References CVariation_inst_Base::IsSetType(), CVariation_inst_Base::m_set_State, CVariation_inst_Base::m_Type, and CSerialObject::UnassignedByte().

SetType() [4/4]

CVariation_ref_Base::C_Data::C_Set::TType & CVariation_ref_Base::C_Data::C_Set::SetType ( void  )

inline

Assign a value to Type data member.

Returns

Reference to the data value.

Definition at line 2298 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State, and CSerialObject::UnassignedByte().

SetUniparental_disomy()

void CVariation_ref_Base::C_Data::SetUniparental_disomy ( void  )

inline

Select the variant.

Definition at line 2449 of file Variation_ref_.hpp.

References CVariation_ref_Base::C_Data::e_Uniparental_disomy, eDoNotResetVariant, and CVariation_ref_Base::C_Data::Select().

Referenced by CVariation_ref::SetUniparentalDisomy().

SetUnknown() [1/2]

void CVariation_ref_Base::C_Data::SetUnknown ( void  )

inline

Select the variant.

Definition at line 2417 of file Variation_ref_.hpp.

References CVariation_ref_Base::C_Data::e_Unknown, eDoNotResetVariant, and CVariation_ref_Base::C_Data::Select().

Referenced by CVariation_ref::SetUnknown().

SetUnknown() [2/2]

void CVariation_ref_Base::C_E_Consequence::SetUnknown ( void  )

inline

Select the variant.

Definition at line 2702 of file Variation_ref_.hpp.

References CVariation_ref_Base::C_Data::e_Unknown, eDoNotResetVariant, and CVariation_ref_Base::C_Data::Select().

SetValidated() [1/2]

void CVariation_ref_Base::SetValidated ( CVariation_ref_Base::TValidated  value )

inline

Assign a value to Validated data member.

Parameters

value

Value to assign

Definition at line 3203 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State, CVariation_ref_Base::m_Validated, and rapidjson::value.

SetValidated() [2/2]

CVariation_ref_Base::TValidated & CVariation_ref_Base::SetValidated ( void  )

inline

Assign a value to Validated data member.

Returns

Reference to the data value.

Definition at line 3210 of file Variation_ref_.hpp.

References CVariation_ref_Base::IsSetValidated(), CVariation_ref_Base::m_set_State, CVariation_ref_Base::m_Validated, and CSerialObject::UnassignedByte().

SetVariant_prop() [1/2]

void CVariation_ref_Base::SetVariant_prop

(

CVariation_ref_Base::TVariant_prop &

value

)

Assign a value to Variant_prop data member.

Parameters

value

Reference to value.

Definition at line 776 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Variant_prop, and rapidjson::value.

Referenced by variation_ref::CVariationUtil::SetVariantProperties().

SetVariant_prop() [2/2]

CVariation_ref_Base::TVariant_prop & CVariation_ref_Base::SetVariant_prop

(

void

)

Assign a value to Variant_prop data member.

Returns

Reference to the data value.

Definition at line 781 of file Variation_ref_.cpp.

References CVariation_ref_Base::m_Variant_prop.

Referenced by CVariation_ref::PostRead(), CVariation_ref::ResetAllele_frequency(), CVariation_ref::ResetAllele_origin(), CVariation_ref::ResetAllele_state(), CVariation_ref::ResetIs_ancestral_allele(), CVariation_ref::ResetValidated(), CVariation_ref::SetAllele_frequency(), CVariation_ref::SetAllele_origin(), CVariation_ref::SetAllele_state(), CVariation_ref::SetIs_ancestral_allele(), and CVariation_ref::SetValidated().

SetVariation() [1/2]

void CVariation_ref_Base::C_E_Consequence::SetVariation

(

TVariation &

value

)

Select the variant and set its data.

Parameters

value

Reference to the data.

Definition at line 487 of file Variation_ref_.cpp.

References CObject::AddReference(), CVariation_ref_Base::C_E_Consequence::e_Variation, CVariation_ref_Base::C_E_Consequence::m_choice, CVariation_ref_Base::C_E_Consequence::m_object, CVariation_ref_Base::C_E_Consequence::ResetSelection(), and rapidjson::value.

SetVariation() [2/2]

CVariation_ref_Base::C_E_Consequence::TVariation & CVariation_ref_Base::C_E_Consequence::SetVariation

(

void

)

Select the variant.

Returns

Reference to the variant data.

Definition at line 481 of file Variation_ref_.cpp.

References CVariation_ref_Base::C_E_Consequence::e_Variation, eDoNotResetVariant, CVariation_ref_Base::C_E_Consequence::m_object, and CVariation_ref_Base::C_E_Consequence::Select().

SetVariations()

CVariation_ref_Base::C_Data::C_Set::TVariations & CVariation_ref_Base::C_Data::C_Set::SetVariations ( void  )

inline

Assign a value to Variations data member.

Returns

Reference to the data value.

Definition at line 2328 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State.

Referenced by CVariation_ref::SetOther(), variation::CVariationUtil::x_AsVariation_ref(), and variation_ref::CHgvsParser::x_list().

SetVersion() [1/2]

void CVariantProperties_Base::SetVersion ( CVariantProperties_Base::TVersion  value )

inline

Assign a value to Version data member.

Parameters

value

Value to assign

Definition at line 992 of file VariantProperties_.hpp.

References CVariantProperties_Base::m_set_State, CVariantProperties_Base::m_Version, and rapidjson::value.

Referenced by NSNPVariationHelper::DecodeBitfield(), variation_ref::CVariationUtil::SetVariantProperties(), and variation_ref::CVariationUtil::x_SetVariantProperties().

SetVersion() [2/2]

CVariantProperties_Base::TVersion & CVariantProperties_Base::SetVersion ( void  )

inline

Assign a value to Version data member.

Returns

Reference to the data value.

Definition at line 999 of file VariantProperties_.hpp.

References CVariantProperties_Base::IsSetVersion(), CVariantProperties_Base::m_set_State, CVariantProperties_Base::m_Version, and CSerialObject::UnassignedByte().

Referenced by CVariantProperties::CVariantProperties().

SetX_length() [1/2]

void CVariation_ref_Base::C_E_Consequence::C_Frameshift::SetX_length ( TX_length  value )

inline

Assign a value to X_length data member.

Parameters

value

Value to assign

Definition at line 2554 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State, and rapidjson::value.

SetX_length() [2/2]

CVariation_ref_Base::C_E_Consequence::C_Frameshift::TX_length & CVariation_ref_Base::C_E_Consequence::C_Frameshift::SetX_length ( void  )

inline

Assign a value to X_length data member.

Returns

Reference to the data value.

Definition at line 2561 of file Variation_ref_.hpp.

References CVariation_ref_Base::m_set_State, and CSerialObject::UnassignedByte().

SetXref()

CPhenotype_Base::TXref & CPhenotype_Base::SetXref ( void  )

inline

Assign a value to Xref data member.

Returns

Reference to the data value.

Definition at line 407 of file Phenotype_.hpp.

References CPhenotype_Base::m_set_State, and CPhenotype_Base::m_Xref.

ThrowInvalidSelection() [1/3]

void CDelta_item_Base::C_Seq::ThrowInvalidSelection

(

E_Choice

index

)

const

Throw 'InvalidSelection' exception.

Parameters

index

Expected selection.

Definition at line 99 of file Delta_item_.cpp.

References DIAG_COMPILE_INFO.

ThrowInvalidSelection() [2/3]

void CVariation_ref_Base::C_Data::ThrowInvalidSelection

(

E_Choice

index

)

const

Throw 'InvalidSelection' exception.

Parameters

index

Expected selection.

Definition at line 246 of file Variation_ref_.cpp.

References DIAG_COMPILE_INFO, CVariation_ref_Base::C_Data::m_choice, and CVariation_ref_Base::C_Data::sm_SelectionNames.

Referenced by CVariation_ref_Base::C_Data::CheckSelected(), and CVariation_ref_Base::C_E_Consequence::CheckSelected().

ThrowInvalidSelection() [3/3]

void CVariation_ref_Base::C_E_Consequence::ThrowInvalidSelection

(

E_Choice

index

)

const

Throw 'InvalidSelection' exception.

Parameters

index

Expected selection.

Definition at line 464 of file Variation_ref_.cpp.

References DIAG_COMPILE_INFO, CVariation_ref_Base::C_E_Consequence::m_choice, and CVariation_ref_Base::C_E_Consequence::sm_SelectionNames.

Which() [1/3]

CDelta_item_Base::C_Seq::E_Choice CDelta_item_Base::C_Seq::Which ( void  ) const

inline

Which variant is currently selected.

Returns

Choice state enumerator.

Definition at line 460 of file Delta_item_.hpp.

References CDelta_item_Base::C_Seq::m_choice.

Referenced by NSNPVariationHelper::GetDeltas(), CGuiObjectInfoVariant::GetToolTip(), NSnpGui::GetVcfType(), and CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_delta_E_E_seq_ETC().

Which() [2/3]

CVariation_ref_Base::C_Data::E_Choice CVariation_ref_Base::C_Data::Which ( void  ) const

inline

Which variant is currently selected.

Returns

Choice state enumerator.

Definition at line 2382 of file Variation_ref_.hpp.

References CVariation_ref_Base::C_Data::m_choice.

Referenced by CVariationUtilities::GetVariationRefAlt(), CVariationUtilities::GetVariationType(), CVariationUtilities::IsIntronicVariation(), CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data(), CVariationNormalization_base< T >::x_Shift(), and CVcfWriter::x_WriteFeature().

Which() [3/3]

CVariation_ref_Base::C_E_Consequence::E_Choice CVariation_ref_Base::C_E_Consequence::Which ( void  ) const

inline

Which variant is currently selected.

Returns

Choice state enumerator.

Definition at line 2667 of file Variation_ref_.hpp.

References CVariation_ref_Base::C_Data::m_choice.

~C_Condition()

CVariation_ref_Base::C_E_Somatic_origin::C_Condition::~C_Condition

(

void

)

Definition at line 609 of file Variation_ref_.cpp.

~C_Data()

CVariation_ref_Base::C_Data::~C_Data

(

void

)

Definition at line 326 of file Variation_ref_.cpp.

References CVariation_ref_Base::Reset().

~C_E_Consequence()

CVariation_ref_Base::C_E_Consequence::~C_E_Consequence

(

void

)

Definition at line 566 of file Variation_ref_.cpp.

References CVariation_ref_Base::Reset().

~C_E_Somatic_origin()

CVariation_ref_Base::C_E_Somatic_origin::~C_E_Somatic_origin

(

void

)

Definition at line 673 of file Variation_ref_.cpp.

~C_Frameshift()

CVariation_ref_Base::C_E_Consequence::C_Frameshift::~C_Frameshift

(

void

)

Definition at line 358 of file Variation_ref_.cpp.

~C_Loss_of_heterozygosity()

CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::~C_Loss_of_heterozygosity

(

void

)

Definition at line 400 of file Variation_ref_.cpp.

~C_Seq()

CDelta_item_Base::C_Seq::~C_Seq

(

void

)

Definition at line 170 of file Delta_item_.cpp.

References CDelta_item_Base::Reset().

~C_Set()

CVariation_ref_Base::C_Data::C_Set::~C_Set

(

void

)

Definition at line 186 of file Variation_ref_.cpp.

~CDelta_item_Base()

CDelta_item_Base::~CDelta_item_Base ( void  )

virtual

Definition at line 250 of file Delta_item_.cpp.

~CExt_loc()

CExt_loc::~CExt_loc

(

void

)

Definition at line 50 of file Ext_loc.cpp.

~CExt_loc_Base()

CExt_loc_Base::~CExt_loc_Base ( void  )

virtual

Definition at line 108 of file Ext_loc_.cpp.

~CPhenotype()

CPhenotype::~CPhenotype

(

void

)

Definition at line 50 of file Phenotype.cpp.

~CPhenotype_Base()

CPhenotype_Base::~CPhenotype_Base ( void  )

virtual

Definition at line 114 of file Phenotype_.cpp.

~CPopulation_data()

CPopulation_data::~CPopulation_data

(

void

)

Definition at line 50 of file Population_data.cpp.

~CPopulation_data_Base()

CPopulation_data_Base::~CPopulation_data_Base ( void  )

virtual

Definition at line 106 of file Population_data_.cpp.

~CVariantProperties_Base()

CVariantProperties_Base::~CVariantProperties_Base ( void  )

virtual

Definition at line 256 of file VariantProperties_.cpp.

~CVariation_inst()

CVariation_inst::~CVariation_inst

(

void

)

Definition at line 50 of file Variation_inst.cpp.

~CVariation_inst_Base()

CVariation_inst_Base::~CVariation_inst_Base ( void  )

virtual

Definition at line 123 of file Variation_inst_.cpp.

~CVariation_ref_Base()

CVariation_ref_Base::~CVariation_ref_Base ( void  )

virtual

Definition at line 949 of file Variation_ref_.cpp.

Variable Documentation

union { ... }

union { ... }

union { ... }

m_Action

int CDelta_item_Base::m_Action

private

Definition at line 447 of file Delta_item_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CDelta_item_Base::GetAction(), CDelta_item_Base::ResetAction(), and CDelta_item_Base::SetAction().

m_Allele_frequency [1/3]

double CPopulation_data_Base::m_Allele_frequency

private

Definition at line 357 of file Population_data_.hpp.

Referenced by CPopulation_data_Base::GetAllele_frequency(), CPopulation_data_Base::ResetAllele_frequency(), and CPopulation_data_Base::SetAllele_frequency().

m_Allele_frequency [2/3]

double CVariantProperties_Base::m_Allele_frequency

private

Definition at line 950 of file VariantProperties_.hpp.

Referenced by CVariantProperties_Base::GetAllele_frequency(), CVariantProperties_Base::ResetAllele_frequency(), and CVariantProperties_Base::SetAllele_frequency().

m_Allele_frequency [3/3]

double CVariation_ref_Base::m_Allele_frequency

private

Definition at line 2242 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CVariation_ref_Base::GetAllele_frequency(), CVariation_ref_Base::ResetAllele_frequency(), and CVariation_ref_Base::SetAllele_frequency().

m_Allele_origin [1/2]

int CVariantProperties_Base::m_Allele_origin

private

Definition at line 948 of file VariantProperties_.hpp.

Referenced by CVariantProperties_Base::GetAllele_origin(), CVariantProperties_Base::ResetAllele_origin(), and CVariantProperties_Base::SetAllele_origin().

m_Allele_origin [2/2]

int CVariation_ref_Base::m_Allele_origin

private

Definition at line 2240 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CVariation_ref_Base::GetAllele_origin(), CVariation_ref_Base::ResetAllele_origin(), and CVariation_ref_Base::SetAllele_origin().

m_Allele_state [1/2]

int CVariantProperties_Base::m_Allele_state

private

Definition at line 949 of file VariantProperties_.hpp.

Referenced by CVariantProperties_Base::GetAllele_state(), CVariantProperties_Base::ResetAllele_state(), and CVariantProperties_Base::SetAllele_state().

m_Allele_state [2/2]

int CVariation_ref_Base::m_Allele_state

private

Definition at line 2241 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CVariation_ref_Base::GetAllele_state(), CVariation_ref_Base::ResetAllele_state(), and CVariation_ref_Base::SetAllele_state().

m_choice [1/3]

E_Choice CDelta_item_Base::C_Seq::m_choice

private

Definition at line 239 of file Delta_item_.hpp.

Referenced by CDelta_item_Base::C_Seq::Reset(), and CDelta_item_Base::C_Seq::Which().

m_choice [2/3]

E_Choice CVariation_ref_Base::C_Data::m_choice

private

Definition at line 550 of file Variation_ref_.hpp.

Referenced by CVariation_ref_Base::C_Data::CheckSelected(), CVariation_ref_Base::C_E_Consequence::CheckSelected(), CVariation_ref_Base::C_Data::DoSelect(), CVariation_ref_Base::C_Data::IsComplex(), CVariation_ref_Base::C_E_Consequence::IsFrameshift(), CVariation_ref_Base::C_Data::IsInstance(), CVariation_ref_Base::C_E_Consequence::IsLoss_of_heterozygosity(), CVariation_ref_Base::C_Data::IsNote(), CVariation_ref_Base::C_E_Consequence::IsNote(), CVariation_ref_Base::C_Data::IsSet(), CVariation_ref_Base::C_E_Consequence::IsSplicing(), CVariation_ref_Base::C_Data::IsUniparental_disomy(), CVariation_ref_Base::C_Data::IsUnknown(), CVariation_ref_Base::C_E_Consequence::IsUnknown(), CVariation_ref_Base::C_E_Consequence::IsVariation(), CVariation_ref_Base::C_Data::Reset(), CVariation_ref_Base::C_Data::ResetSelection(), CVariation_ref_Base::C_Data::SetInstance(), CVariation_ref_Base::C_Data::SetSet(), CVariation_ref_Base::C_Data::ThrowInvalidSelection(), CVariation_ref_Base::C_Data::Which(), and CVariation_ref_Base::C_E_Consequence::Which().

m_choice [3/3]

E_Choice CVariation_ref_Base::C_E_Consequence::m_choice

private

Definition at line 1030 of file Variation_ref_.hpp.

Referenced by CVariation_ref_Base::C_E_Consequence::DoSelect(), CVariation_ref_Base::C_E_Consequence::Reset(), CVariation_ref_Base::C_E_Consequence::ResetSelection(), CVariation_ref_Base::C_E_Consequence::SetFrameshift(), CVariation_ref_Base::C_E_Consequence::SetLoss_of_heterozygosity(), CVariation_ref_Base::C_E_Consequence::SetVariation(), and CVariation_ref_Base::C_E_Consequence::ThrowInvalidSelection().

m_Chromosomes_tested

int CPopulation_data_Base::m_Chromosomes_tested

private

Definition at line 355 of file Population_data_.hpp.

Referenced by CPopulation_data_Base::GetChromosomes_tested(), CPopulation_data_Base::ResetChromosomes_tested(), and CPopulation_data_Base::SetChromosomes_tested().

m_Clinical_significance

int CPhenotype_Base::m_Clinical_significance

private

Definition at line 282 of file Phenotype_.hpp.

Referenced by CPhenotype_Base::GetClinical_significance(), CPhenotype_Base::ResetClinical_significance(), and CPhenotype_Base::SetClinical_significance().

m_Clinical_test

list< CRef< CDbtag > > CVariation_ref_Base::m_Clinical_test

private

Definition at line 2239 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CVariation_ref_Base::GetClinical_test(), CVariation_ref_Base::ResetClinical_test(), and CVariation_ref_Base::SetClinical_test().

m_Condition

CRef< TCondition > CVariation_ref_Base::C_E_Somatic_origin::m_Condition

private

Definition at line 1277 of file Variation_ref_.hpp.

m_Confidence

int CVariantProperties_Base::m_Confidence

private

Definition at line 946 of file VariantProperties_.hpp.

Referenced by CVariantProperties_Base::GetConfidence(), CVariantProperties_Base::ResetConfidence(), and CVariantProperties_Base::SetConfidence().

m_Consequence

list< CRef< C_E_Consequence > > CVariation_ref_Base::m_Consequence

private

Definition at line 2246 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CVariation_ref_Base::GetConsequence(), CVariation_ref_Base::ResetConsequence(), and CVariation_ref_Base::SetConsequence().

m_Data

CRef< TData > CVariation_ref_Base::m_Data

private

Definition at line 2245 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CVariation_ref_Base::GetData(), CVariation_ref_Base::IsSetData(), CVariation_ref_Base::ResetData(), and CVariation_ref_Base::SetData().

m_Delta

list< CRef< CDelta_item > > CVariation_inst_Base::m_Delta

private

Definition at line 264 of file Variation_inst_.hpp.

Referenced by CVariation_inst_Base::GetDelta(), CVariation_inst_Base::ResetDelta(), and CVariation_inst_Base::SetDelta().

m_Description [1/2]

string CVariation_ref_Base::C_E_Somatic_origin::C_Condition::m_Description

private

Definition at line 1172 of file Variation_ref_.hpp.

m_Description [2/2]

string CVariation_ref_Base::m_Description

private

Definition at line 2233 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), BEGIN_NAMED_CLASS_INFO(), CVariation_ref_Base::C_E_Somatic_origin::C_Condition::GetDescription(), CVariation_ref_Base::GetDescription(), CVariation_ref_Base::C_E_Somatic_origin::C_Condition::ResetDescription(), CVariation_ref_Base::ResetDescription(), CVariation_ref_Base::C_E_Somatic_origin::C_Condition::SetDescription(), and CVariation_ref_Base::SetDescription().

m_Effect

int CVariantProperties_Base::m_Effect

private

Definition at line 939 of file VariantProperties_.hpp.

Referenced by CVariantProperties_Base::GetEffect(), CVariantProperties_Base::ResetEffect(), and CVariantProperties_Base::SetEffect().

m_Ext

CRef< TExt > CVariation_ref_Base::m_Ext

private

Definition at line 2249 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CVariation_ref_Base::GetExt(), CVariation_ref_Base::IsSetExt(), CVariation_ref_Base::ResetExt(), and CVariation_ref_Base::SetExt().

m_Ext_locs

list< CRef< CExt_loc > > CVariation_ref_Base::m_Ext_locs

private

Definition at line 2248 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CVariation_ref_Base::GetExt_locs(), CVariation_ref_Base::ResetExt_locs(), and CVariation_ref_Base::SetExt_locs().

m_Flags

int CPopulation_data_Base::m_Flags

private

Definition at line 358 of file Population_data_.hpp.

Referenced by CPopulation_data_Base::GetFlags(), CPopulation_data_Base::ResetFlags(), and CPopulation_data_Base::SetFlags().

m_Frequency_based_validation

int CVariantProperties_Base::m_Frequency_based_validation

private

Definition at line 942 of file VariantProperties_.hpp.

Referenced by CVariantProperties_Base::GetFrequency_based_validation(), CVariantProperties_Base::ResetFrequency_based_validation(), and CVariantProperties_Base::SetFrequency_based_validation().

m_Gene_location

int CVariantProperties_Base::m_Gene_location

private

Definition at line 938 of file VariantProperties_.hpp.

Referenced by CVariantProperties_Base::GetGene_location(), CVariantProperties_Base::ResetGene_location(), and CVariantProperties_Base::SetGene_location().

m_Genotype

int CVariantProperties_Base::m_Genotype

private

Definition at line 943 of file VariantProperties_.hpp.

Referenced by CVariantProperties_Base::GetGenotype(), CVariantProperties_Base::ResetGenotype(), and CVariantProperties_Base::SetGenotype().

m_Genotype_frequency

double CPopulation_data_Base::m_Genotype_frequency

private

Definition at line 354 of file Population_data_.hpp.

Referenced by CPopulation_data_Base::GetGenotype_frequency(), CPopulation_data_Base::ResetGenotype_frequency(), and CPopulation_data_Base::SetGenotype_frequency().

m_Id [1/2]

CRef< TId > CExt_loc_Base::m_Id

private

Definition at line 185 of file Ext_loc_.hpp.

Referenced by CExt_loc_Base::GetId(), CExt_loc_Base::IsSetId(), CExt_loc_Base::ResetId(), and CExt_loc_Base::SetId().

m_Id [2/2]

CRef< TId > CVariation_ref_Base::m_Id

private

Definition at line 2227 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CVariation_ref_Base::GetId(), CVariation_ref_Base::IsSetId(), CVariation_ref_Base::ResetId(), and CVariation_ref_Base::SetId().

m_Is_ancestral_allele [1/2]

bool CVariantProperties_Base::m_Is_ancestral_allele

private

Definition at line 951 of file VariantProperties_.hpp.

Referenced by CVariantProperties_Base::GetIs_ancestral_allele(), CVariantProperties_Base::ResetIs_ancestral_allele(), and CVariantProperties_Base::SetIs_ancestral_allele().

m_Is_ancestral_allele [2/2]

bool CVariation_ref_Base::m_Is_ancestral_allele

private

Definition at line 2243 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CVariation_ref_Base::GetIs_ancestral_allele(), CVariation_ref_Base::ResetIs_ancestral_allele(), and CVariation_ref_Base::SetIs_ancestral_allele().

m_Location [1/2]

CRef< TLocation > CExt_loc_Base::m_Location

private

Definition at line 186 of file Ext_loc_.hpp.

Referenced by CExt_loc_Base::GetLocation(), CExt_loc_Base::IsSetLocation(), CExt_loc_Base::ResetLocation(), and CExt_loc_Base::SetLocation().

m_Location [2/2]

CRef< TLocation > CVariation_ref_Base::m_Location

private

Definition at line 2247 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CVariation_ref_Base::GetLocation(), CVariation_ref_Base::IsSetLocation(), CVariation_ref_Base::ResetLocation(), and CVariation_ref_Base::SetLocation().

m_Map_weight

int CVariantProperties_Base::m_Map_weight

private

Definition at line 941 of file VariantProperties_.hpp.

Referenced by CVariantProperties_Base::GetMap_weight(), CVariantProperties_Base::ResetMap_weight(), and CVariantProperties_Base::SetMap_weight().

m_Mapping

int CVariantProperties_Base::m_Mapping

private

Definition at line 940 of file VariantProperties_.hpp.

Referenced by CVariantProperties_Base::GetMapping(), CVariantProperties_Base::ResetMapping(), and CVariantProperties_Base::SetMapping().

m_Method

list< int > CVariation_ref_Base::m_Method

private

Definition at line 2235 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CVariation_ref_Base::GetMethod(), CVariation_ref_Base::ResetMethod(), and CVariation_ref_Base::SetMethod().

m_Multiplier

int CDelta_item_Base::m_Multiplier

private

Definition at line 445 of file Delta_item_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CDelta_item_Base::GetMultiplier(), CDelta_item_Base::ResetMultiplier(), and CDelta_item_Base::SetMultiplier().

m_Multiplier_fuzz

CRef< TMultiplier_fuzz > CDelta_item_Base::m_Multiplier_fuzz

private

Definition at line 446 of file Delta_item_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CDelta_item_Base::GetMultiplier_fuzz(), CDelta_item_Base::IsSetMultiplier_fuzz(), CDelta_item_Base::ResetMultiplier_fuzz(), and CDelta_item_Base::SetMultiplier_fuzz().

m_Name [1/2]

string CVariation_ref_Base::C_Data::C_Set::m_Name

private

Definition at line 359 of file Variation_ref_.hpp.

m_Name [2/2]

string CVariation_ref_Base::m_Name

private

Definition at line 2231 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), BEGIN_NAMED_CLASS_INFO(), CVariation_ref_Base::C_Data::C_Set::GetName(), CVariation_ref_Base::GetName(), CVariation_ref_Base::C_Data::C_Set::ResetName(), CVariation_ref_Base::ResetName(), CVariation_ref_Base::C_Data::C_Set::SetName(), and CVariation_ref_Base::SetName().

[1/6]

NCBI_NS_NCBI::CSerialObject* { ... } ::m_object

Definition at line 246 of file Delta_item_.hpp.

m_object [2/6]

NCBI_NS_NCBI::CSerialObject* CDelta_item_Base::C_Seq::m_object

Definition at line 246 of file Delta_item_.hpp.

m_object [3/6]

NCBI_NS_NCBI::CSerialObject* CVariation_ref_Base::C_Data::m_object

Definition at line 558 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_CHOICE_INFO(), CVariation_ref_Base::C_Data::DoSelect(), CVariation_ref_Base::C_Data::GetInstance(), CVariation_ref_Base::C_Data::GetSet(), CVariation_ref_Base::C_Data::ResetSelection(), CVariation_ref_Base::C_Data::SetInstance(), and CVariation_ref_Base::C_Data::SetSet().

[4/6]

NCBI_NS_NCBI::CSerialObject* { ... } ::m_object

Definition at line 558 of file Variation_ref_.hpp.

m_object [5/6]

NCBI_NS_NCBI::CSerialObject* CVariation_ref_Base::C_E_Consequence::m_object

Definition at line 1038 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_CHOICE_INFO(), CVariation_ref_Base::C_E_Consequence::DoSelect(), CVariation_ref_Base::C_E_Consequence::GetFrameshift(), CVariation_ref_Base::C_E_Consequence::GetLoss_of_heterozygosity(), CVariation_ref_Base::C_E_Consequence::GetVariation(), CVariation_ref_Base::C_E_Consequence::ResetSelection(), CVariation_ref_Base::C_E_Consequence::SetFrameshift(), CVariation_ref_Base::C_E_Consequence::SetLoss_of_heterozygosity(), and CVariation_ref_Base::C_E_Consequence::SetVariation().

[6/6]

NCBI_NS_NCBI::CSerialObject* { ... } ::m_object

Definition at line 1038 of file Variation_ref_.hpp.

m_Object_id

list< CRef< CDbtag > > CVariation_ref_Base::C_E_Somatic_origin::C_Condition::m_Object_id

private

Definition at line 1173 of file Variation_ref_.hpp.

m_Observation

int CVariation_inst_Base::m_Observation

private

Definition at line 265 of file Variation_inst_.hpp.

Referenced by CVariation_inst_Base::GetObservation(), CVariation_inst_Base::ResetObservation(), and CVariation_inst_Base::SetObservation().

m_Other_ids

list< CRef< CDbtag > > CVariation_ref_Base::m_Other_ids

private

Definition at line 2230 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CVariation_ref_Base::GetOther_ids(), CVariation_ref_Base::ResetOther_ids(), and CVariation_ref_Base::SetOther_ids().

m_Other_validation

bool CVariantProperties_Base::m_Other_validation

private

Definition at line 947 of file VariantProperties_.hpp.

Referenced by CVariantProperties_Base::GetOther_validation(), CVariantProperties_Base::ResetOther_validation(), and CVariantProperties_Base::SetOther_validation().

m_Parent_id

CRef< TParent_id > CVariation_ref_Base::m_Parent_id

private

Definition at line 2228 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CVariation_ref_Base::GetParent_id(), CVariation_ref_Base::IsSetParent_id(), CVariation_ref_Base::ResetParent_id(), and CVariation_ref_Base::SetParent_id().

m_Phase

int CVariation_ref_Base::C_E_Consequence::C_Frameshift::m_Phase

private

Definition at line 696 of file Variation_ref_.hpp.

m_Phenotype

list< CRef< CPhenotype > > CVariation_ref_Base::m_Phenotype

private

Definition at line 2234 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CVariation_ref_Base::GetPhenotype(), CVariation_ref_Base::ResetPhenotype(), and CVariation_ref_Base::SetPhenotype().

m_Population

string CPopulation_data_Base::m_Population

private

Definition at line 353 of file Population_data_.hpp.

Referenced by CPopulation_data_Base::GetPopulation(), CPopulation_data_Base::ResetPopulation(), and CPopulation_data_Base::SetPopulation().

m_Population_data

list< CRef< CPopulation_data > > CVariation_ref_Base::m_Population_data

private

Definition at line 2236 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CVariation_ref_Base::GetPopulation_data(), CVariation_ref_Base::ResetPopulation_data(), and CVariation_ref_Base::SetPopulation_data().

m_Project_data

list< int > CVariantProperties_Base::m_Project_data

private

Definition at line 944 of file VariantProperties_.hpp.

Referenced by CVariantProperties_Base::GetProject_data(), CVariantProperties_Base::ResetProject_data(), and CVariantProperties_Base::SetProject_data().

m_Pub

CRef< TPub > CVariation_ref_Base::m_Pub

private

Definition at line 2244 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CVariation_ref_Base::GetPub(), CVariation_ref_Base::IsSetPub(), CVariation_ref_Base::ResetPub(), and CVariation_ref_Base::SetPub().

m_Quality_check

int CVariantProperties_Base::m_Quality_check

private

Definition at line 945 of file VariantProperties_.hpp.

Referenced by CVariantProperties_Base::GetQuality_check(), CVariantProperties_Base::ResetQuality_check(), and CVariantProperties_Base::SetQuality_check().

m_Reference

string CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::m_Reference

private

Definition at line 822 of file Variation_ref_.hpp.

m_Resource_link

int CVariantProperties_Base::m_Resource_link

private

Definition at line 937 of file VariantProperties_.hpp.

Referenced by CVariantProperties_Base::GetResource_link(), CVariantProperties_Base::ResetResource_link(), and CVariantProperties_Base::SetResource_link().

m_Sample_id

CRef< TSample_id > CVariation_ref_Base::m_Sample_id

private

Definition at line 2229 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CVariation_ref_Base::GetSample_id(), CVariation_ref_Base::IsSetSample_id(), CVariation_ref_Base::ResetSample_id(), and CVariation_ref_Base::SetSample_id().

m_Sample_ids

list< CRef< CObject_id > > CPopulation_data_Base::m_Sample_ids

private

Definition at line 356 of file Population_data_.hpp.

Referenced by CPopulation_data_Base::GetSample_ids(), CPopulation_data_Base::ResetSample_ids(), and CPopulation_data_Base::SetSample_ids().

m_Seq

CRef< TSeq > CDelta_item_Base::m_Seq

private

Definition at line 444 of file Delta_item_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CDelta_item_Base::GetSeq(), CDelta_item_Base::IsSetSeq(), CDelta_item_Base::ResetSeq(), and CDelta_item_Base::SetSeq().

m_set_State [1/12]

Uint4 CDelta_item_Base::m_set_State[1]

private

Definition at line 443 of file Delta_item_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CDelta_item_Base::CDelta_item_Base(), CDelta_item_Base::IsSetAction(), CDelta_item_Base::IsSetMultiplier(), CDelta_item_Base::ResetAction(), CDelta_item_Base::ResetMultiplier(), CDelta_item_Base::SetAction(), and CDelta_item_Base::SetMultiplier().

m_set_State [2/12]

Uint4 CExt_loc_Base::m_set_State[1]

private

Definition at line 184 of file Ext_loc_.hpp.

Referenced by CExt_loc_Base::CExt_loc_Base().

m_set_State [3/12]

Uint4 CPhenotype_Base::m_set_State[1]

private

Definition at line 278 of file Phenotype_.hpp.

Referenced by CPhenotype_Base::CPhenotype_Base(), CPhenotype_Base::IsSetClinical_significance(), CPhenotype_Base::IsSetSource(), CPhenotype_Base::IsSetTerm(), CPhenotype_Base::IsSetXref(), CPhenotype_Base::ResetClinical_significance(), CPhenotype_Base::ResetSource(), CPhenotype_Base::ResetTerm(), CPhenotype_Base::ResetXref(), CPhenotype_Base::SetClinical_significance(), CPhenotype_Base::SetSource(), CPhenotype_Base::SetTerm(), and CPhenotype_Base::SetXref().

m_set_State [4/12]

Uint4 CPopulation_data_Base::m_set_State[1]

private

Definition at line 352 of file Population_data_.hpp.

Referenced by CPopulation_data_Base::CPopulation_data_Base(), CPopulation_data_Base::IsSetAllele_frequency(), CPopulation_data_Base::IsSetChromosomes_tested(), CPopulation_data_Base::IsSetFlags(), CPopulation_data_Base::IsSetGenotype_frequency(), CPopulation_data_Base::IsSetPopulation(), CPopulation_data_Base::IsSetSample_ids(), CPopulation_data_Base::ResetAllele_frequency(), CPopulation_data_Base::ResetChromosomes_tested(), CPopulation_data_Base::ResetFlags(), CPopulation_data_Base::ResetGenotype_frequency(), CPopulation_data_Base::ResetPopulation(), CPopulation_data_Base::ResetSample_ids(), CPopulation_data_Base::SetAllele_frequency(), CPopulation_data_Base::SetChromosomes_tested(), CPopulation_data_Base::SetFlags(), CPopulation_data_Base::SetGenotype_frequency(), CPopulation_data_Base::SetPopulation(), and CPopulation_data_Base::SetSample_ids().

m_set_State [5/12]

Uint4 CVariantProperties_Base::m_set_State[1]

private

Definition at line 935 of file VariantProperties_.hpp.

Referenced by CVariantProperties_Base::CVariantProperties_Base(), CVariantProperties_Base::IsSetAllele_frequency(), CVariantProperties_Base::IsSetAllele_origin(), CVariantProperties_Base::IsSetAllele_state(), CVariantProperties_Base::IsSetConfidence(), CVariantProperties_Base::IsSetEffect(), CVariantProperties_Base::IsSetFrequency_based_validation(), CVariantProperties_Base::IsSetGene_location(), CVariantProperties_Base::IsSetGenotype(), CVariantProperties_Base::IsSetIs_ancestral_allele(), CVariantProperties_Base::IsSetMap_weight(), CVariantProperties_Base::IsSetMapping(), CVariantProperties_Base::IsSetOther_validation(), CVariantProperties_Base::IsSetProject_data(), CVariantProperties_Base::IsSetQuality_check(), CVariantProperties_Base::IsSetResource_link(), CVariantProperties_Base::IsSetVersion(), CVariantProperties_Base::ResetAllele_frequency(), CVariantProperties_Base::ResetAllele_origin(), CVariantProperties_Base::ResetAllele_state(), CVariantProperties_Base::ResetConfidence(), CVariantProperties_Base::ResetEffect(), CVariantProperties_Base::ResetFrequency_based_validation(), CVariantProperties_Base::ResetGene_location(), CVariantProperties_Base::ResetGenotype(), CVariantProperties_Base::ResetIs_ancestral_allele(), CVariantProperties_Base::ResetMap_weight(), CVariantProperties_Base::ResetMapping(), CVariantProperties_Base::ResetOther_validation(), CVariantProperties_Base::ResetProject_data(), CVariantProperties_Base::ResetQuality_check(), CVariantProperties_Base::ResetResource_link(), CVariantProperties_Base::ResetVersion(), CVariantProperties_Base::SetAllele_frequency(), CVariantProperties_Base::SetAllele_origin(), CVariantProperties_Base::SetAllele_state(), CVariantProperties_Base::SetConfidence(), CVariantProperties_Base::SetEffect(), CVariantProperties_Base::SetFrequency_based_validation(), CVariantProperties_Base::SetGene_location(), CVariantProperties_Base::SetGenotype(), CVariantProperties_Base::SetIs_ancestral_allele(), CVariantProperties_Base::SetMap_weight(), CVariantProperties_Base::SetMapping(), CVariantProperties_Base::SetOther_validation(), CVariantProperties_Base::SetProject_data(), CVariantProperties_Base::SetQuality_check(), CVariantProperties_Base::SetResource_link(), and CVariantProperties_Base::SetVersion().

m_set_State [6/12]

Uint4 CVariation_inst_Base::m_set_State[1]

private

Definition at line 262 of file Variation_inst_.hpp.

Referenced by CVariation_inst_Base::CVariation_inst_Base(), CVariation_inst_Base::IsSetDelta(), CVariation_inst_Base::IsSetObservation(), CVariation_inst_Base::IsSetType(), CVariation_inst_Base::ResetDelta(), CVariation_inst_Base::ResetObservation(), CVariation_inst_Base::ResetType(), CVariation_inst_Base::SetDelta(), CVariation_inst_Base::SetObservation(), and CVariation_inst_Base::SetType().

m_set_State [7/12]

Uint4 CVariation_ref_Base::C_Data::C_Set::m_set_State[1]

private

Definition at line 356 of file Variation_ref_.hpp.

Referenced by CVariation_ref_Base::C_Data::C_Set::C_Set(), CVariation_ref_Base::C_Data::C_Set::IsSetType(), and CVariation_ref_Base::C_Data::C_Set::ResetVariations().

m_set_State [8/12]

Uint4 CVariation_ref_Base::C_E_Consequence::C_Frameshift::m_set_State[1]

private

Definition at line 695 of file Variation_ref_.hpp.

Referenced by CVariation_ref_Base::C_E_Consequence::C_Frameshift::C_Frameshift().

m_set_State [9/12]

Uint4 CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::m_set_State[1]

private

Definition at line 821 of file Variation_ref_.hpp.

m_set_State [10/12]

Uint4 CVariation_ref_Base::C_E_Somatic_origin::C_Condition::m_set_State[1]

private

Definition at line 1171 of file Variation_ref_.hpp.

m_set_State [11/12]

Uint4 CVariation_ref_Base::C_E_Somatic_origin::m_set_State[1]

private

Definition at line 1275 of file Variation_ref_.hpp.

m_set_State [12/12]

Uint4 CVariation_ref_Base::m_set_State[2]

private

Definition at line 2226 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), BEGIN_NAMED_CLASS_INFO(), CVariation_ref_Base::C_E_Somatic_origin::C_Condition::C_Condition(), CVariation_ref_Base::C_E_Somatic_origin::C_E_Somatic_origin(), CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::C_Loss_of_heterozygosity(), CVariation_ref_Base::CVariation_ref_Base(), CVariation_ref_Base::IsSetAllele_frequency(), CVariation_ref_Base::IsSetAllele_origin(), CVariation_ref_Base::IsSetAllele_state(), CVariation_ref_Base::IsSetClinical_test(), CVariation_ref_Base::IsSetConsequence(), CVariation_ref_Base::C_E_Somatic_origin::C_Condition::IsSetDescription(), CVariation_ref_Base::IsSetDescription(), CVariation_ref_Base::IsSetExt_locs(), CVariation_ref_Base::IsSetIs_ancestral_allele(), CVariation_ref_Base::IsSetMethod(), CVariation_ref_Base::C_Data::C_Set::IsSetName(), CVariation_ref_Base::IsSetName(), CVariation_ref_Base::C_E_Somatic_origin::C_Condition::IsSetObject_id(), CVariation_ref_Base::IsSetOther_ids(), CVariation_ref_Base::C_E_Consequence::C_Frameshift::IsSetPhase(), CVariation_ref_Base::IsSetPhenotype(), CVariation_ref_Base::IsSetPopulation_data(), CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::IsSetReference(), CVariation_ref_Base::IsSetSomatic_origin(), CVariation_ref_Base::IsSetSynonyms(), CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::IsSetTest(), CVariation_ref_Base::IsSetValidated(), CVariation_ref_Base::C_Data::C_Set::IsSetVariations(), CVariation_ref_Base::C_E_Consequence::C_Frameshift::IsSetX_length(), CVariation_ref_Base::ResetAllele_frequency(), CVariation_ref_Base::ResetAllele_origin(), CVariation_ref_Base::ResetAllele_state(), CVariation_ref_Base::ResetClinical_test(), CVariation_ref_Base::ResetConsequence(), CVariation_ref_Base::C_E_Somatic_origin::C_Condition::ResetDescription(), CVariation_ref_Base::ResetDescription(), CVariation_ref_Base::ResetExt_locs(), CVariation_ref_Base::ResetIs_ancestral_allele(), CVariation_ref_Base::ResetMethod(), CVariation_ref_Base::C_Data::C_Set::ResetName(), CVariation_ref_Base::ResetName(), CVariation_ref_Base::C_E_Somatic_origin::C_Condition::ResetObject_id(), CVariation_ref_Base::ResetOther_ids(), CVariation_ref_Base::C_E_Consequence::C_Frameshift::ResetPhase(), CVariation_ref_Base::ResetPhenotype(), CVariation_ref_Base::ResetPopulation_data(), CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::ResetReference(), CVariation_ref_Base::ResetSomatic_origin(), CVariation_ref_Base::ResetSynonyms(), CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::ResetTest(), CVariation_ref_Base::C_Data::C_Set::ResetType(), CVariation_ref_Base::ResetValidated(), CVariation_ref_Base::C_E_Consequence::C_Frameshift::ResetX_length(), CVariation_ref_Base::SetAllele_frequency(), CVariation_ref_Base::SetAllele_origin(), CVariation_ref_Base::SetAllele_state(), CVariation_ref_Base::SetClinical_test(), CVariation_ref_Base::SetConsequence(), CVariation_ref_Base::C_E_Somatic_origin::C_Condition::SetDescription(), CVariation_ref_Base::SetDescription(), CVariation_ref_Base::SetExt_locs(), CVariation_ref_Base::SetIs_ancestral_allele(), CVariation_ref_Base::SetMethod(), CVariation_ref_Base::C_Data::C_Set::SetName(), CVariation_ref_Base::SetName(), CVariation_ref_Base::C_E_Somatic_origin::C_Condition::SetObject_id(), CVariation_ref_Base::SetOther_ids(), CVariation_ref_Base::C_E_Consequence::C_Frameshift::SetPhase(), CVariation_ref_Base::SetPhenotype(), CVariation_ref_Base::SetPopulation_data(), CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::SetReference(), CVariation_ref_Base::SetSomatic_origin(), CVariation_ref_Base::SetSynonyms(), CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::SetTest(), CVariation_ref_Base::C_Data::C_Set::SetType(), CVariation_ref_Base::SetValidated(), CVariation_ref_Base::C_Data::C_Set::SetVariations(), and CVariation_ref_Base::C_E_Consequence::C_Frameshift::SetX_length().

m_Somatic_origin

list< CRef< C_E_Somatic_origin > > CVariation_ref_Base::m_Somatic_origin

private

Definition at line 2250 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CVariation_ref_Base::GetSomatic_origin(), CVariation_ref_Base::ResetSomatic_origin(), and CVariation_ref_Base::SetSomatic_origin().

m_Source [1/2]

string CPhenotype_Base::m_Source

private

Definition at line 279 of file Phenotype_.hpp.

Referenced by CPhenotype_Base::GetSource(), CPhenotype_Base::ResetSource(), and CPhenotype_Base::SetSource().

m_Source [2/2]

CRef< TSource > CVariation_ref_Base::C_E_Somatic_origin::m_Source

private

Definition at line 1276 of file Variation_ref_.hpp.

m_string [1/4]

NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string> CVariation_ref_Base::C_Data::m_string

Definition at line 557 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_CHOICE_INFO(), CVariation_ref_Base::C_Data::DoSelect(), CVariation_ref_Base::C_Data::GetNote(), CVariation_ref_Base::C_E_Consequence::GetNote(), CVariation_ref_Base::C_Data::ResetSelection(), CVariation_ref_Base::C_Data::SetNote(), and CVariation_ref_Base::C_E_Consequence::SetNote().

[2/4]

NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string> { ... } ::m_string

Definition at line 557 of file Variation_ref_.hpp.

m_string [3/4]

NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string> CVariation_ref_Base::C_E_Consequence::m_string

Definition at line 1037 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_CHOICE_INFO(), CVariation_ref_Base::C_E_Consequence::DoSelect(), CVariation_ref_Base::C_E_Consequence::ResetSelection(), and CVariation_ref_Base::C_E_Consequence::SetNote().

[4/4]

NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string> { ... } ::m_string

Definition at line 1037 of file Variation_ref_.hpp.

m_Synonyms

list< string > CVariation_ref_Base::m_Synonyms

private

Definition at line 2232 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CVariation_ref_Base::GetSynonyms(), CVariation_ref_Base::ResetSynonyms(), and CVariation_ref_Base::SetSynonyms().

m_Term

string CPhenotype_Base::m_Term

private

Definition at line 280 of file Phenotype_.hpp.

Referenced by CPhenotype_Base::GetTerm(), CPhenotype_Base::ResetTerm(), and CPhenotype_Base::SetTerm().

m_Test

string CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity::m_Test

private

Definition at line 823 of file Variation_ref_.hpp.

m_Type [1/2]

int CVariation_inst_Base::m_Type

private

Definition at line 263 of file Variation_inst_.hpp.

Referenced by CVariation_inst_Base::GetType(), CVariation_inst_Base::ResetType(), and CVariation_inst_Base::SetType().

m_Type [2/2]

int CVariation_ref_Base::C_Data::C_Set::m_Type

private

Definition at line 357 of file Variation_ref_.hpp.

m_Validated

bool CVariation_ref_Base::m_Validated

private

Definition at line 2238 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CVariation_ref_Base::GetValidated(), CVariation_ref_Base::ResetValidated(), and CVariation_ref_Base::SetValidated().

m_Variant_prop

CRef< TVariant_prop > CVariation_ref_Base::m_Variant_prop

private

Definition at line 2237 of file Variation_ref_.hpp.

Referenced by BEGIN_NAMED_BASE_CLASS_INFO(), CVariation_ref_Base::GetVariant_prop(), CVariation_ref_Base::IsSetVariant_prop(), CVariation_ref_Base::ResetVariant_prop(), and CVariation_ref_Base::SetVariant_prop().

m_Variations

list< CRef< CVariation_ref > > CVariation_ref_Base::C_Data::C_Set::m_Variations

private

Definition at line 358 of file Variation_ref_.hpp.

Referenced by CVariation_ref_Base::C_Data::C_Set::ResetVariations().

m_Version

int CVariantProperties_Base::m_Version

private

Definition at line 936 of file VariantProperties_.hpp.

Referenced by CVariantProperties_Base::GetVersion(), CVariantProperties_Base::ResetVersion(), and CVariantProperties_Base::SetVersion().

m_X_length

int CVariation_ref_Base::C_E_Consequence::C_Frameshift::m_X_length

private

Definition at line 697 of file Variation_ref_.hpp.

m_Xref

list< CRef< CDbtag > > CPhenotype_Base::m_Xref

private

Definition at line 281 of file Phenotype_.hpp.

Referenced by CPhenotype_Base::GetXref(), CPhenotype_Base::ResetXref(), and CPhenotype_Base::SetXref().

sm_SelectionNames [1/3]

const char *const CDelta_item_Base::C_Seq::sm_SelectionNames

staticprivate

Initial value:

= {
    "not set",
    "literal",
    "loc",
    "this"
}

Definition at line 243 of file Delta_item_.hpp.

sm_SelectionNames [2/3]

const char *const CVariation_ref_Base::C_Data::sm_SelectionNames

staticprivate

Initial value:

= {
    "not set",
    "unknown",
    "note",
    "uniparental-disomy",
    "instance",
    "set",
    "complex"
}

Definition at line 554 of file Variation_ref_.hpp.

Referenced by CVariation_ref_Base::C_Data::SelectionName(), and CVariation_ref_Base::C_Data::ThrowInvalidSelection().

sm_SelectionNames [3/3]

const char *const CVariation_ref_Base::C_E_Consequence::sm_SelectionNames

staticprivate

Initial value:

= {
    "not set",
    "unknown",
    "splicing",
    "note",
    "variation",
    "frameshift",
    "loss-of-heterozygosity"
}

Definition at line 1034 of file Variation_ref_.hpp.

Referenced by CVariation_ref_Base::C_E_Consequence::SelectionName(), and CVariation_ref_Base::C_E_Consequence::ThrowInvalidSelection().