NCBI C++ ToolKit
Classes | Typedefs | Enumerations | Enumerator | Functions | Variables
Code generated by DATATOOL from 'omssa.asn' (module 'OMSSA')
+ Collaboration diagram for Code generated by DATATOOL from 'omssa.asn' (module 'OMSSA'):

Classes

class  CMSBioseq
 CMSBioseq –. More...
 
class  CMSBioseq_Base
 bioseq container More...
 
class  CMSBioseqSet_Base
 CMSBioseqSet_Base –. More...
 
class  CMSChargeHandle
 CMSChargeHandle –. More...
 
class  CMSChargeHandle_Base
 How to handle precursor charge. More...
 
class  CMSHits_Base
 hits to a given spectrum More...
 
class  CMSHitSet
 CMSHitSet –. More...
 
class  CMSHitSet_Base
 contains a set of hits to a single spectrum More...
 
class  CMSImmonium
 CMSImmonium –. More...
 
class  CMSImmonium_Base
 type of immonium ion More...
 
class  CMSInFile
 CMSInFile –. More...
 
class  CMSInFile_Base
 CMSInFile_Base –. More...
 
class  CMSIon
 CMSIon –. More...
 
class  CMSIon_Base
 ion type at a finer level than ion series More...
 
class  CMSIonAnnot
 CMSIonAnnot –. More...
 
class  CMSIonAnnot_Base
 annotated comments about the ion More...
 
class  CMSIterativeSettings
 CMSIterativeSettings –. More...
 
class  CMSIterativeSettings_Base
 Iterative search settings. More...
 
class  CMSLibrarySettings
 CMSLibrarySettings –. More...
 
class  CMSLibrarySettings_Base
 Library search settings. More...
 
class  CMSMassSet
 CMSMassSet –. More...
 
class  CMSMassSet_Base
 mass container More...
 
class  CMSModHit
 CMSModHit –. More...
 
class  CMSModHit_Base
 modifications to a hit peptide More...
 
class  CMSModSpec
 CMSModSpec –. More...
 
class  CMSModSpec_Base
 Modification Definition. More...
 
class  CMSModSpecSet_Base
 Holds a set of modifications. More...
 
class  CMSMZHit
 CMSMZHit –. More...
 
class  CMSMZHit_Base
 defines a particular ion More...
 
class  CMSOutFile
 CMSOutFile –. More...
 
class  CMSOutFile_Base
 CMSOutFile_Base –. More...
 
class  CMSPepHit
 CMSPepHit –. More...
 
class  CMSPepHit_Base
 contains information about sequences with identical peptide sequences More...
 
class  CMSRequest_Base
 The search request that is given to the OMSSA algorithm. More...
 
class  CMSResponse_Base
 search results More...
 
class  CMSScoreSet
 CMSScoreSet –. More...
 
class  CMSScoreSet_Base
 sets of scores More...
 
class  CMSSearch_Base
 holds both search requests and responses More...
 
class  CMSSearchSettings_Base
 Generic search settings. More...
 
class  CMSSearchSettingsSet
 CMSSearchSettingsSet –. More...
 
class  CMSSearchSettingsSet_Base
 CMSSearchSettingsSet_Base –. More...
 
class  CMSSpectrum
 CMSSpectrum –. More...
 
class  CMSSpectrum_Base
 Holds a single spectrum. More...
 
class  CMSSpectrumset
 CMSSpectrumset –. More...
 
class  CMSSpectrumset_Base
 Holds a set of spectra. More...
 
class  CNameValue
 CNameValue –. More...
 
class  CNameValue_Base
 Generic holder for experimental info. More...
 

Typedefs

typedef CMSBioseq_Base CMSBioseq::Tparent
 
typedef CSerialObject CMSBioseq_Base::Tparent
 
typedef int CMSBioseq_Base::TOid
 
typedef CBioseq CMSBioseq_Base::TSeq
 
typedef Tparent::CMemberIndex< E_memberIndex, 3 > CMSBioseq_Base::TmemberIndex
 
typedef CSerialObject CMSBioseqSet_Base::Tparent
 
typedef list< CRef< CMSBioseq > > CMSBioseqSet_Base::Tdata
 
typedef CMSChargeHandle_Base CMSChargeHandle::Tparent
 
typedef CSerialObject CMSChargeHandle_Base::Tparent
 
typedef int CMSChargeHandle_Base::TCalcplusone
 
typedef int CMSChargeHandle_Base::TCalccharge
 
typedef int CMSChargeHandle_Base::TMincharge
 
typedef int CMSChargeHandle_Base::TMaxcharge
 
typedef int CMSChargeHandle_Base::TConsidermult
 
typedef double CMSChargeHandle_Base::TPlusone
 
typedef int CMSChargeHandle_Base::TMaxproductcharge
 
typedef bool CMSChargeHandle_Base::TProdlesspre
 
typedef int CMSChargeHandle_Base::TNegative
 
typedef Tparent::CMemberIndex< E_memberIndex, 10 > CMSChargeHandle_Base::TmemberIndex
 
typedef CSerialObject CMSHits_Base::Tparent
 
typedef double CMSHits_Base::TEvalue
 
typedef double CMSHits_Base::TPvalue
 
typedef int CMSHits_Base::TCharge
 
typedef list< CRef< CMSPepHit > > CMSHits_Base::TPephits
 
typedef list< CRef< CMSMZHit > > CMSHits_Base::TMzhits
 
typedef string CMSHits_Base::TPepstring
 
typedef int CMSHits_Base::TMass
 
typedef list< CRef< CMSModHit > > CMSHits_Base::TMods
 
typedef string CMSHits_Base::TPepstart
 
typedef string CMSHits_Base::TPepstop
 
typedef int CMSHits_Base::TProtlength
 
typedef int CMSHits_Base::TTheomass
 
typedef int CMSHits_Base::TOid
 
typedef list< CRef< CMSScoreSet > > CMSHits_Base::TScores
 
typedef string CMSHits_Base::TLibaccession
 
typedef Tparent::CMemberIndex< E_memberIndex, 16 > CMSHits_Base::TmemberIndex
 
typedef CMSHitSet_Base CMSHitSet::Tparent
 
typedef CSerialObject CMSHitSet_Base::Tparent
 
typedef int CMSHitSet_Base::TNumber
 
typedef int CMSHitSet_Base::TError
 
typedef vector< CRef< CMSHits > > CMSHitSet_Base::THits
 
typedef list< stringCMSHitSet_Base::TIds
 
typedef list< CRef< CNameValue > > CMSHitSet_Base::TNamevalue
 
typedef int CMSHitSet_Base::TSettingid
 
typedef int CMSHitSet_Base::TUserannotation
 
typedef Tparent::CMemberIndex< E_memberIndex, 8 > CMSHitSet_Base::TmemberIndex
 
typedef CMSImmonium_Base CMSImmonium::Tparent
 
typedef CSerialObject CMSImmonium_Base::Tparent
 
typedef string CMSImmonium_Base::TParent
 
typedef string CMSImmonium_Base::TProduct
 
typedef Tparent::CMemberIndex< E_memberIndex, 3 > CMSImmonium_Base::TmemberIndex
 
typedef CMSInFile_Base CMSInFile::Tparent
 
typedef CSerialObject CMSInFile_Base::Tparent
 
typedef string CMSInFile_Base::TInfile
 
typedef int CMSInFile_Base::TInfiletype
 
typedef Tparent::CMemberIndex< E_memberIndex, 3 > CMSInFile_Base::TmemberIndex
 
typedef CMSIon_Base CMSIon::Tparent
 
typedef CSerialObject CMSIon_Base::Tparent
 
typedef int CMSIon_Base::TNeutralloss
 
typedef int CMSIon_Base::TIsotope
 
typedef string CMSIon_Base::TInternal
 
typedef CMSImmonium CMSIon_Base::TImmonium
 
typedef Tparent::CMemberIndex< E_memberIndex, 5 > CMSIon_Base::TmemberIndex
 
typedef CMSIonAnnot_Base CMSIonAnnot::Tparent
 
typedef CSerialObject CMSIonAnnot_Base::Tparent
 
typedef bool CMSIonAnnot_Base::TSuspect
 
typedef double CMSIonAnnot_Base::TMassdiff
 
typedef bool CMSIonAnnot_Base::TMissingisotope
 
typedef Tparent::CMemberIndex< E_memberIndex, 4 > CMSIonAnnot_Base::TmemberIndex
 
typedef CMSIterativeSettings_Base CMSIterativeSettings::Tparent
 
typedef CSerialObject CMSIterativeSettings_Base::Tparent
 
typedef double CMSIterativeSettings_Base::TResearchthresh
 
typedef double CMSIterativeSettings_Base::TSubsetthresh
 
typedef double CMSIterativeSettings_Base::TReplacethresh
 
typedef Tparent::CMemberIndex< E_memberIndex, 4 > CMSIterativeSettings_Base::TmemberIndex
 
typedef CMSLibrarySettings_Base CMSLibrarySettings::Tparent
 
typedef CSerialObject CMSLibrarySettings_Base::Tparent
 
typedef list< stringCMSLibrarySettings_Base::TLibnames
 
typedef bool CMSLibrarySettings_Base::TPresearch
 
typedef bool CMSLibrarySettings_Base::TUseomssascore
 
typedef bool CMSLibrarySettings_Base::TUsereplicatescore
 
typedef bool CMSLibrarySettings_Base::TQtofscore
 
typedef Tparent::CMemberIndex< E_memberIndex, 6 > CMSLibrarySettings_Base::TmemberIndex
 
typedef CMSMassSet_Base CMSMassSet::Tparent
 
typedef CSerialObject CMSMassSet_Base::Tparent
 
typedef double CMSMassSet_Base::TMonomass
 
typedef double CMSMassSet_Base::TAveragemass
 
typedef double CMSMassSet_Base::TN15mass
 
typedef Tparent::CMemberIndex< E_memberIndex, 4 > CMSMassSet_Base::TmemberIndex
 
typedef CMSModHit_Base CMSModHit::Tparent
 
typedef CSerialObject CMSModHit_Base::Tparent
 
typedef int CMSModHit_Base::TSite
 
typedef int CMSModHit_Base::TModtype
 
typedef Tparent::CMemberIndex< E_memberIndex, 3 > CMSModHit_Base::TmemberIndex
 
typedef CMSModSpec_Base CMSModSpec::Tparent
 
typedef CSerialObject CMSModSpec_Base::Tparent
 
typedef int CMSModSpec_Base::TMod
 
typedef int CMSModSpec_Base::TType
 
typedef string CMSModSpec_Base::TName
 
typedef double CMSModSpec_Base::TMonomass
 
typedef double CMSModSpec_Base::TAveragemass
 
typedef double CMSModSpec_Base::TN15mass
 
typedef list< stringCMSModSpec_Base::TResidues
 
typedef CMSMassSet CMSModSpec_Base::TNeutralloss
 
typedef int CMSModSpec_Base::TUnimod
 
typedef string CMSModSpec_Base::TPsi_ms
 
typedef Tparent::CMemberIndex< E_memberIndex, 11 > CMSModSpec_Base::TmemberIndex
 
typedef CSerialObject CMSModSpecSet_Base::Tparent
 
typedef list< CRef< CMSModSpec > > CMSModSpecSet_Base::Tdata
 
typedef CMSMZHit_Base CMSMZHit::Tparent
 
typedef CSerialObject CMSMZHit_Base::Tparent
 
typedef int CMSMZHit_Base::TIon
 
typedef int CMSMZHit_Base::TCharge
 
typedef int CMSMZHit_Base::TNumber
 
typedef int CMSMZHit_Base::TMz
 
typedef int CMSMZHit_Base::TIndex
 
typedef CMSIon CMSMZHit_Base::TMoreion
 
typedef CMSIonAnnot CMSMZHit_Base::TAnnotation
 
typedef Tparent::CMemberIndex< E_memberIndex, 8 > CMSMZHit_Base::TmemberIndex
 
typedef CMSOutFile_Base CMSOutFile::Tparent
 
typedef CSerialObject CMSOutFile_Base::Tparent
 
typedef string CMSOutFile_Base::TOutfile
 
typedef int CMSOutFile_Base::TOutfiletype
 
typedef bool CMSOutFile_Base::TIncluderequest
 
typedef Tparent::CMemberIndex< E_memberIndex, 4 > CMSOutFile_Base::TmemberIndex
 
typedef CMSPepHit_Base CMSPepHit::Tparent
 
typedef CSerialObject CMSPepHit_Base::Tparent
 
typedef int CMSPepHit_Base::TStart
 
typedef int CMSPepHit_Base::TStop
 
typedef NCBI_NS_NCBI::TGi CMSPepHit_Base::TGi
 
typedef string CMSPepHit_Base::TAccession
 
typedef string CMSPepHit_Base::TDefline
 
typedef int CMSPepHit_Base::TProtlength
 
typedef int CMSPepHit_Base::TOid
 
typedef bool CMSPepHit_Base::TReversed
 
typedef string CMSPepHit_Base::TPepstart
 
typedef string CMSPepHit_Base::TPepstop
 
typedef Tparent::CMemberIndex< E_memberIndex, 11 > CMSPepHit_Base::TmemberIndex
 
typedef CSerialObject CMSRequest_Base::Tparent
 
typedef CMSSpectrumset CMSRequest_Base::TSpectra
 
typedef CMSSearchSettings CMSRequest_Base::TSettings
 
typedef string CMSRequest_Base::TRid
 
typedef CMSSearchSettingsSet CMSRequest_Base::TMoresettings
 
typedef CMSModSpecSet CMSRequest_Base::TModset
 
typedef Tparent::CMemberIndex< E_memberIndex, 6 > CMSRequest_Base::TmemberIndex
 
typedef CSerialObject CMSResponse_Base::Tparent
 
typedef vector< CRef< CMSHitSet > > CMSResponse_Base::THitsets
 
typedef int CMSResponse_Base::TScale
 
typedef string CMSResponse_Base::TRid
 
typedef int CMSResponse_Base::TError
 
typedef string CMSResponse_Base::TVersion
 
typedef string CMSResponse_Base::TEmail
 
typedef int CMSResponse_Base::TDbversion
 
typedef CMSBioseqSet CMSResponse_Base::TBioseqs
 
typedef Tparent::CMemberIndex< E_memberIndex, 9 > CMSResponse_Base::TmemberIndex
 
typedef CMSScoreSet_Base CMSScoreSet::Tparent
 
typedef CSerialObject CMSScoreSet_Base::Tparent
 
typedef string CMSScoreSet_Base::TName
 
typedef double CMSScoreSet_Base::TValue
 
typedef Tparent::CMemberIndex< E_memberIndex, 3 > CMSScoreSet_Base::TmemberIndex
 
typedef CSerialObject CMSSearch_Base::Tparent
 
typedef list< CRef< CMSRequest > > CMSSearch_Base::TRequest
 
typedef list< CRef< CMSResponse > > CMSSearch_Base::TResponse
 
typedef Tparent::CMemberIndex< E_memberIndex, 3 > CMSSearch_Base::TmemberIndex
 
typedef CSerialObject CMSSearchSettings_Base::Tparent
 
typedef int CMSSearchSettings_Base::TPrecursorsearchtype
 
typedef int CMSSearchSettings_Base::TProductsearchtype
 
typedef list< intCMSSearchSettings_Base::TIonstosearch
 
typedef double CMSSearchSettings_Base::TPeptol
 
typedef double CMSSearchSettings_Base::TMsmstol
 
typedef int CMSSearchSettings_Base::TZdep
 
typedef double CMSSearchSettings_Base::TCutoff
 
typedef double CMSSearchSettings_Base::TCutlo
 
typedef double CMSSearchSettings_Base::TCuthi
 
typedef double CMSSearchSettings_Base::TCutinc
 
typedef int CMSSearchSettings_Base::TSinglewin
 
typedef int CMSSearchSettings_Base::TDoublewin
 
typedef int CMSSearchSettings_Base::TSinglenum
 
typedef int CMSSearchSettings_Base::TDoublenum
 
typedef list< intCMSSearchSettings_Base::TFixed
 
typedef list< intCMSSearchSettings_Base::TVariable
 
typedef int CMSSearchSettings_Base::TEnzyme
 
typedef int CMSSearchSettings_Base::TMissedcleave
 
typedef int CMSSearchSettings_Base::THitlistlen
 
typedef string CMSSearchSettings_Base::TDb
 
typedef int CMSSearchSettings_Base::TTophitnum
 
typedef int CMSSearchSettings_Base::TMinhit
 
typedef int CMSSearchSettings_Base::TMinspectra
 
typedef int CMSSearchSettings_Base::TScale
 
typedef int CMSSearchSettings_Base::TMaxmods
 
typedef list< intCMSSearchSettings_Base::TTaxids
 
typedef CMSChargeHandle CMSSearchSettings_Base::TChargehandling
 
typedef CMSModSpecSet CMSSearchSettings_Base::TUsermods
 
typedef int CMSSearchSettings_Base::TPseudocount
 
typedef int CMSSearchSettings_Base::TSearchb1
 
typedef int CMSSearchSettings_Base::TSearchctermproduct
 
typedef int CMSSearchSettings_Base::TMaxproductions
 
typedef int CMSSearchSettings_Base::TMinnoenzyme
 
typedef int CMSSearchSettings_Base::TMaxnoenzyme
 
typedef double CMSSearchSettings_Base::TExactmass
 
typedef int CMSSearchSettings_Base::TSettingid
 
typedef CMSIterativeSettings CMSSearchSettings_Base::TIterativesettings
 
typedef int CMSSearchSettings_Base::TPrecursorcull
 
typedef list< CRef< CMSInFile > > CMSSearchSettings_Base::TInfiles
 
typedef list< CRef< CMSOutFile > > CMSSearchSettings_Base::TOutfiles
 
typedef int CMSSearchSettings_Base::TNocorrelationscore
 
typedef double CMSSearchSettings_Base::TProbfollowingion
 
typedef bool CMSSearchSettings_Base::TNmethionine
 
typedef double CMSSearchSettings_Base::TAutomassadjust
 
typedef double CMSSearchSettings_Base::TLomasscutoff
 
typedef CMSLibrarySettings CMSSearchSettings_Base::TLibsearchsettings
 
typedef list< intCMSSearchSettings_Base::TNoprolineions
 
typedef bool CMSSearchSettings_Base::TReversesearch
 
typedef list< CRef< CNameValue > > CMSSearchSettings_Base::TOthersettings
 
typedef int CMSSearchSettings_Base::TNumisotopes
 
typedef bool CMSSearchSettings_Base::TPepppm
 
typedef bool CMSSearchSettings_Base::TMsmsppm
 
typedef int CMSSearchSettings_Base::TReportedhitcount
 
typedef Tparent::CMemberIndex< E_memberIndex, 54 > CMSSearchSettings_Base::TmemberIndex
 
typedef CMSSearchSettingsSet_Base CMSSearchSettingsSet::Tparent
 
typedef CSerialObject CMSSearchSettingsSet_Base::Tparent
 
typedef list< CRef< CMSSearchSettings > > CMSSearchSettingsSet_Base::Tdata
 
typedef CMSSpectrum_Base CMSSpectrum::Tparent
 
typedef CSerialObject CMSSpectrum_Base::Tparent
 
typedef int CMSSpectrum_Base::TNumber
 
typedef list< intCMSSpectrum_Base::TCharge
 
typedef int CMSSpectrum_Base::TPrecursormz
 
typedef vector< intCMSSpectrum_Base::TMz
 
typedef vector< intCMSSpectrum_Base::TAbundance
 
typedef double CMSSpectrum_Base::TIscale
 
typedef list< stringCMSSpectrum_Base::TIds
 
typedef list< CRef< CNameValue > > CMSSpectrum_Base::TNamevalue
 
typedef Tparent::CMemberIndex< E_memberIndex, 9 > CMSSpectrum_Base::TmemberIndex
 
typedef CMSSpectrumset_Base CMSSpectrumset::Tparent
 
typedef CSerialObject CMSSpectrumset_Base::Tparent
 
typedef list< CRef< CMSSpectrum > > CMSSpectrumset_Base::Tdata
 
typedef CNameValue_Base CNameValue::Tparent
 
typedef CSerialObject CNameValue_Base::Tparent
 
typedef string CNameValue_Base::TName
 
typedef string CNameValue_Base::TValue
 
typedef Tparent::CMemberIndex< E_memberIndex, 3 > CNameValue_Base::TmemberIndex
 

Enumerations

enum class  CMSBioseq_Base::E_memberIndex { CMSBioseq_Base::e__allMandatory = 0 , CMSBioseq_Base::e_oid , CMSBioseq_Base::e_seq }
 
enum  EMSCalcCharge { eMSCalcCharge_calculate = 0 , eMSCalcCharge_usefile = 1 , eMSCalcCharge_userange = 2 }
 user instructions on whether to believe charges in input file More...
 
enum  EMSCalcPlusOne { eMSCalcPlusOne_dontcalc = 0 , eMSCalcPlusOne_calc = 1 }
 How is charge to be handled? Some input files are not clear on this. More...
 
enum class  CMSChargeHandle_Base::E_memberIndex {
  CMSChargeHandle_Base::e__allMandatory = 0 , CMSChargeHandle_Base::e_calcplusone , CMSChargeHandle_Base::e_calccharge , CMSChargeHandle_Base::e_mincharge ,
  CMSChargeHandle_Base::e_maxcharge , CMSChargeHandle_Base::e_considermult , CMSChargeHandle_Base::e_plusone , CMSChargeHandle_Base::e_maxproductcharge ,
  CMSChargeHandle_Base::e_prodlesspre , CMSChargeHandle_Base::e_negative
}
 
enum  EMSEnzymes {
  eMSEnzymes_trypsin = 0 , eMSEnzymes_argc = 1 , eMSEnzymes_cnbr = 2 , eMSEnzymes_chymotrypsin = 3 ,
  eMSEnzymes_formicacid = 4 , eMSEnzymes_lysc = 5 , eMSEnzymes_lysc_p = 6 , eMSEnzymes_pepsin_a = 7 ,
  eMSEnzymes_tryp_cnbr = 8 , eMSEnzymes_tryp_chymo = 9 , eMSEnzymes_trypsin_p = 10 , eMSEnzymes_whole_protein = 11 ,
  eMSEnzymes_aspn = 12 , eMSEnzymes_gluc = 13 , eMSEnzymes_aspngluc = 14 , eMSEnzymes_top_down = 15 ,
  eMSEnzymes_semi_tryptic = 16 , eMSEnzymes_no_enzyme = 17 , eMSEnzymes_chymotrypsin_p = 18 , eMSEnzymes_aspn_de = 19 ,
  eMSEnzymes_gluc_de = 20 , eMSEnzymes_lysn = 21 , eMSEnzymes_thermolysin_p = 22 , eMSEnzymes_semi_chymotrypsin = 23 ,
  eMSEnzymes_semi_gluc = 24 , eMSEnzymes_max = 25 , eMSEnzymes_none = 255
}
 enumerate enzymes More...
 
enum  EMSHitError { eMSHitError_none = 0 , eMSHitError_generalerr = 1 , eMSHitError_unable2read = 2 , eMSHitError_notenuffpeaks = 3 }
 error return for a particular spectrum's hitset More...
 
enum class  CMSHits_Base::E_memberIndex {
  CMSHits_Base::e__allMandatory = 0 , CMSHits_Base::e_evalue , CMSHits_Base::e_pvalue , CMSHits_Base::e_charge ,
  CMSHits_Base::e_pephits , CMSHits_Base::e_mzhits , CMSHits_Base::e_pepstring , CMSHits_Base::e_mass ,
  CMSHits_Base::e_mods , CMSHits_Base::e_pepstart , CMSHits_Base::e_pepstop , CMSHits_Base::e_protlength ,
  CMSHits_Base::e_theomass , CMSHits_Base::e_oid , CMSHits_Base::e_scores , CMSHits_Base::e_libaccession
}
 
enum class  CMSHitSet_Base::E_memberIndex {
  CMSHitSet_Base::e__allMandatory = 0 , CMSHitSet_Base::e_number , CMSHitSet_Base::e_error , CMSHitSet_Base::e_hits ,
  CMSHitSet_Base::e_ids , CMSHitSet_Base::e_namevalue , CMSHitSet_Base::e_settingid , CMSHitSet_Base::e_userannotation
}
 
enum class  CMSImmonium_Base::E_memberIndex { CMSImmonium_Base::e__allMandatory = 0 , CMSImmonium_Base::e_parent , CMSImmonium_Base::e_product }
 
enum class  CMSInFile_Base::E_memberIndex { CMSInFile_Base::e__allMandatory = 0 , CMSInFile_Base::e_infile , CMSInFile_Base::e_infiletype }
 
enum class  CMSIon_Base::E_memberIndex {
  CMSIon_Base::e__allMandatory = 0 , CMSIon_Base::e_neutralloss , CMSIon_Base::e_isotope , CMSIon_Base::e_internal ,
  CMSIon_Base::e_immonium
}
 
enum class  CMSIonAnnot_Base::E_memberIndex { CMSIonAnnot_Base::e__allMandatory = 0 , CMSIonAnnot_Base::e_suspect , CMSIonAnnot_Base::e_massdiff , CMSIonAnnot_Base::e_missingisotope }
 
enum  EMSIonIsotopicType {
  eMSIonIsotopicType_monoisotopic = 0 , eMSIonIsotopicType_c13 = 1 , eMSIonIsotopicType_c13two = 2 , eMSIonIsotopicType_c13three = 3 ,
  eMSIonIsotopicType_c13four = 4
}
 iosotopic type of ion More...
 
enum  EMSIonNeutralLoss { eMSIonNeutralLoss_water = 0 , eMSIonNeutralLoss_ammonia = 1 }
 types of neutral loss More...
 
enum  EMSIonType {
  eMSIonType_a = 0 , eMSIonType_b = 1 , eMSIonType_c = 2 , eMSIonType_x = 3 ,
  eMSIonType_y = 4 , eMSIonType_z = 5 , eMSIonType_parent = 6 , eMSIonType_internal = 7 ,
  eMSIonType_immonium = 8 , eMSIonType_unknown = 9 , eMSIonType_adot = 10 , eMSIonType_x_CO2 = 11 ,
  eMSIonType_adot_CO2 = 12 , eMSIonType_max = 13
}
 enumeration of ion types More...
 
enum class  CMSIterativeSettings_Base::E_memberIndex { CMSIterativeSettings_Base::e__allMandatory = 0 , CMSIterativeSettings_Base::e_researchthresh , CMSIterativeSettings_Base::e_subsetthresh , CMSIterativeSettings_Base::e_replacethresh }
 
enum class  CMSLibrarySettings_Base::E_memberIndex {
  CMSLibrarySettings_Base::e__allMandatory = 0 , CMSLibrarySettings_Base::e_libnames , CMSLibrarySettings_Base::e_presearch , CMSLibrarySettings_Base::e_useomssascore ,
  CMSLibrarySettings_Base::e_usereplicatescore , CMSLibrarySettings_Base::e_qtofscore
}
 
enum class  CMSMassSet_Base::E_memberIndex { CMSMassSet_Base::e__allMandatory = 0 , CMSMassSet_Base::e_monomass , CMSMassSet_Base::e_averagemass , CMSMassSet_Base::e_n15mass }
 
enum  EMSMod {
  eMSMod_methylk = 0 , eMSMod_oxym = 1 , eMSMod_carboxymethylc = 2 , eMSMod_carbamidomethylc = 3 ,
  eMSMod_deamidationkq = 4 , eMSMod_propionamidec = 5 , eMSMod_phosphorylations = 6 , eMSMod_phosphorylationt = 7 ,
  eMSMod_phosphorylationy = 8 , eMSMod_ntermmcleave = 9 , eMSMod_ntermacetyl = 10 , eMSMod_ntermmethyl = 11 ,
  eMSMod_ntermtrimethyl = 12 , eMSMod_methythiold = 13 , eMSMod_methylq = 14 , eMSMod_trimethylk = 15 ,
  eMSMod_methyld = 16 , eMSMod_methyle = 17 , eMSMod_ctermpepmethyl = 18 , eMSMod_trideuteromethyld = 19 ,
  eMSMod_trideuteromethyle = 20 , eMSMod_ctermpeptrideuteromethyl = 21 , eMSMod_nformylmet = 22 , eMSMod_twoamino3oxobutanoicacid = 23 ,
  eMSMod_acetylk = 24 , eMSMod_ctermamide = 25 , eMSMod_bmethylthiold = 26 , eMSMod_carbamidomethylk = 27 ,
  eMSMod_carbamidometylh = 28 , eMSMod_carbamidomethyld = 29 , eMSMod_carbamidomethyle = 30 , eMSMod_carbamylk = 31 ,
  eMSMod_ntermcarbamyl = 32 , eMSMod_citrullinationr = 33 , eMSMod_cysteicacidc = 34 , eMSMod_diiodinationy = 35 ,
  eMSMod_dimethylk = 36 , eMSMod_dimethylr = 37 , eMSMod_ntermpepdimethyl = 38 , eMSMod_dihydroxyf = 39 ,
  eMSMod_thioacetylk = 40 , eMSMod_ntermpeptioacetyl = 41 , eMSMod_farnesylationc = 42 , eMSMod_formylk = 43 ,
  eMSMod_ntermpepformyl = 44 , eMSMod_formylkynureninw = 45 , eMSMod_phef = 46 , eMSMod_gammacarboxyld = 47 ,
  eMSMod_gammacarboxyle = 48 , eMSMod_geranylgeranylc = 49 , eMSMod_ntermpepglucuronylg = 50 , eMSMod_glutathionec = 51 ,
  eMSMod_glyglyk = 52 , eMSMod_guanidinationk = 53 , eMSMod_his2asnh = 54 , eMSMod_his2asph = 55 ,
  eMSMod_ctermpephsem = 56 , eMSMod_ctermpephselactm = 57 , eMSMod_hydroxykynureninw = 58 , eMSMod_hydroxylationd = 59 ,
  eMSMod_hydroxylationk = 60 , eMSMod_hydroxylationn = 61 , eMSMod_hydroxylationp = 62 , eMSMod_hydroxylationf = 63 ,
  eMSMod_hydroxylationy = 64 , eMSMod_iodinationy = 65 , eMSMod_kynureninw = 66 , eMSMod_lipoylk = 67 ,
  eMSMod_ctermpepmeester = 68 , eMSMod_meesterd = 69 , eMSMod_meestere = 70 , eMSMod_meesters = 71 ,
  eMSMod_meestery = 72 , eMSMod_methylc = 73 , eMSMod_methylh = 74 , eMSMod_methyln = 75 ,
  eMSMod_ntermpepmethyl = 76 , eMSMod_methylr = 77 , eMSMod_ntermpepmyristoyeylationg = 78 , eMSMod_ntermpepmyristoyl4hg = 79 ,
  eMSMod_ntermpepmyristoylationg = 80 , eMSMod_myristoylationk = 81 , eMSMod_ntermformyl = 82 , eMSMod_nemc = 83 ,
  eMSMod_nipcam = 84 , eMSMod_nitrow = 85 , eMSMod_nitroy = 86 , eMSMod_ctermpepo18 = 87 ,
  eMSMod_ctermpepdio18 = 88 , eMSMod_oxyh = 89 , eMSMod_oxyw = 90 , eMSMod_ppantetheines = 91 ,
  eMSMod_palmitoylationc = 92 , eMSMod_palmitoylationk = 93 , eMSMod_palmitoylations = 94 , eMSMod_palmitoylationt = 95 ,
  eMSMod_phospholosss = 96 , eMSMod_phospholosst = 97 , eMSMod_phospholossy = 98 , eMSMod_phosphoneutrallossc = 99 ,
  eMSMod_phosphoneutrallossd = 100 , eMSMod_phosphoneutrallossh = 101 , eMSMod_propionylk = 102 , eMSMod_ntermpeppropionyl = 103 ,
  eMSMod_propionylheavyk = 104 , eMSMod_ntermpeppropionylheavy = 105 , eMSMod_pyridylk = 106 , eMSMod_ntermpeppyridyl = 107 ,
  eMSMod_ntermpeppyrocmc = 108 , eMSMod_ntermpeppyroe = 109 , eMSMod_ntermpeppyroq = 110 , eMSMod_pyroglutamicp = 111 ,
  eMSMod_spyridylethylc = 112 , eMSMod_semetm = 113 , eMSMod_sulfationy = 114 , eMSMod_suphonem = 115 ,
  eMSMod_triiodinationy = 116 , eMSMod_trimethylationr = 117 , eMSMod_ntermpeptripalmitatec = 118 , eMSMod_usermod1 = 119 ,
  eMSMod_usermod2 = 120 , eMSMod_usermod3 = 121 , eMSMod_usermod4 = 122 , eMSMod_usermod5 = 123 ,
  eMSMod_usermod6 = 124 , eMSMod_usermod7 = 125 , eMSMod_usermod8 = 126 , eMSMod_usermod9 = 127 ,
  eMSMod_usermod10 = 128 , eMSMod_icatlight = 129 , eMSMod_icatheavy = 130 , eMSMod_camthiopropanoylk = 131 ,
  eMSMod_phosphoneutrallosss = 132 , eMSMod_phosphoneutrallosst = 133 , eMSMod_phosphoetdlosss = 134 , eMSMod_phosphoetdlosst = 135 ,
  eMSMod_arg_13c6 = 136 , eMSMod_arg_13c6_15n4 = 137 , eMSMod_lys_13c6 = 138 , eMSMod_oxy18 = 139 ,
  eMSMod_beta_elim_s = 140 , eMSMod_beta_elim_t = 141 , eMSMod_usermod11 = 142 , eMSMod_usermod12 = 143 ,
  eMSMod_usermod13 = 144 , eMSMod_usermod14 = 145 , eMSMod_usermod15 = 146 , eMSMod_usermod16 = 147 ,
  eMSMod_usermod17 = 148 , eMSMod_usermod18 = 149 , eMSMod_usermod19 = 150 , eMSMod_usermod20 = 151 ,
  eMSMod_usermod21 = 152 , eMSMod_usermod22 = 153 , eMSMod_usermod23 = 154 , eMSMod_usermod24 = 155 ,
  eMSMod_usermod25 = 156 , eMSMod_usermod26 = 157 , eMSMod_usermod27 = 158 , eMSMod_usermod28 = 159 ,
  eMSMod_usermod29 = 160 , eMSMod_usermod30 = 161 , eMSMod_sulfinicacid = 162 , eMSMod_arg2orn = 163 ,
  eMSMod_dehydro = 164 , eMSMod_carboxykynurenin = 165 , eMSMod_sumoylation = 166 , eMSMod_iTRAQ114nterm = 167 ,
  eMSMod_iTRAQ114K = 168 , eMSMod_iTRAQ114Y = 169 , eMSMod_iTRAQ115nterm = 170 , eMSMod_iTRAQ115K = 171 ,
  eMSMod_iTRAQ115Y = 172 , eMSMod_iTRAQ116nterm = 173 , eMSMod_iTRAQ116K = 174 , eMSMod_iTRAQ116Y = 175 ,
  eMSMod_iTRAQ117nterm = 176 , eMSMod_iTRAQ117K = 177 , eMSMod_iTRAQ117Y = 178 , eMSMod_mmts = 179 ,
  eMSMod_lys_2H4 = 180 , eMSMod_lys_13C615N2 = 181 , eMSMod_hexNAcN = 182 , eMSMod_dHexHexNAcN = 183 ,
  eMSMod_hexNAcS = 184 , eMSMod_hexNAcT = 185 , eMSMod_mod186 = 186 , eMSMod_mod187 = 187 ,
  eMSMod_mod188 = 188 , eMSMod_mod189 = 189 , eMSMod_mod190 = 190 , eMSMod_mod191 = 191 ,
  eMSMod_mod192 = 192 , eMSMod_mod193 = 193 , eMSMod_mod194 = 194 , eMSMod_mod195 = 195 ,
  eMSMod_mod196 = 196 , eMSMod_mod197 = 197 , eMSMod_mod198 = 198 , eMSMod_mod199 = 199 ,
  eMSMod_mod200 = 200 , eMSMod_mod201 = 201 , eMSMod_mod202 = 202 , eMSMod_mod203 = 203 ,
  eMSMod_mod204 = 204 , eMSMod_mod205 = 205 , eMSMod_mod206 = 206 , eMSMod_mod207 = 207 ,
  eMSMod_mod208 = 208 , eMSMod_mod209 = 209 , eMSMod_mod210 = 210 , eMSMod_mod211 = 211 ,
  eMSMod_mod212 = 212 , eMSMod_mod213 = 213 , eMSMod_mod214 = 214 , eMSMod_mod215 = 215 ,
  eMSMod_mod216 = 216 , eMSMod_mod217 = 217 , eMSMod_mod218 = 218 , eMSMod_mod219 = 219 ,
  eMSMod_mod220 = 220 , eMSMod_mod221 = 221 , eMSMod_mod222 = 222 , eMSMod_mod223 = 223 ,
  eMSMod_mod224 = 224 , eMSMod_mod225 = 225 , eMSMod_mod226 = 226 , eMSMod_mod227 = 227 ,
  eMSMod_mod228 = 228 , eMSMod_mod229 = 229 , eMSMod_mod230 = 230 , eMSMod_max = 231 ,
  eMSMod_unknown = 9999 , eMSMod_none = 10000
}
 enumerate modifications More...
 
enum class  CMSModHit_Base::E_memberIndex { CMSModHit_Base::e__allMandatory = 0 , CMSModHit_Base::e_site , CMSModHit_Base::e_modtype }
 
enum class  CMSModSpec_Base::E_memberIndex {
  CMSModSpec_Base::e__allMandatory = 0 , CMSModSpec_Base::e_mod , CMSModSpec_Base::e_type , CMSModSpec_Base::e_name ,
  CMSModSpec_Base::e_monomass , CMSModSpec_Base::e_averagemass , CMSModSpec_Base::e_n15mass , CMSModSpec_Base::e_residues ,
  CMSModSpec_Base::e_neutralloss , CMSModSpec_Base::e_unimod , CMSModSpec_Base::e_psi_ms
}
 
enum  EMSModType {
  eMSModType_modaa = 0 , eMSModType_modn = 1 , eMSModType_modnaa = 2 , eMSModType_modc = 3 ,
  eMSModType_modcaa = 4 , eMSModType_modnp = 5 , eMSModType_modnpaa = 6 , eMSModType_modcp = 7 ,
  eMSModType_modcpaa = 8 , eMSModType_modmax = 9
}
 enumerate modification types More...
 
enum class  CMSMZHit_Base::E_memberIndex {
  CMSMZHit_Base::e__allMandatory = 0 , CMSMZHit_Base::e_ion , CMSMZHit_Base::e_charge , CMSMZHit_Base::e_number ,
  CMSMZHit_Base::e_mz , CMSMZHit_Base::e_index , CMSMZHit_Base::e_moreion , CMSMZHit_Base::e_annotation
}
 
enum class  CMSOutFile_Base::E_memberIndex { CMSOutFile_Base::e__allMandatory = 0 , CMSOutFile_Base::e_outfile , CMSOutFile_Base::e_outfiletype , CMSOutFile_Base::e_includerequest }
 
enum class  CMSPepHit_Base::E_memberIndex {
  CMSPepHit_Base::e__allMandatory = 0 , CMSPepHit_Base::e_start , CMSPepHit_Base::e_stop , CMSPepHit_Base::e_gi ,
  CMSPepHit_Base::e_accession , CMSPepHit_Base::e_defline , CMSPepHit_Base::e_protlength , CMSPepHit_Base::e_oid ,
  CMSPepHit_Base::e_reversed , CMSPepHit_Base::e_pepstart , CMSPepHit_Base::e_pepstop
}
 
enum class  CMSRequest_Base::E_memberIndex {
  CMSRequest_Base::e__allMandatory = 0 , CMSRequest_Base::e_spectra , CMSRequest_Base::e_settings , CMSRequest_Base::e_rid ,
  CMSRequest_Base::e_moresettings , CMSRequest_Base::e_modset
}
 
enum class  CMSResponse_Base::E_memberIndex {
  CMSResponse_Base::e__allMandatory = 0 , CMSResponse_Base::e_hitsets , CMSResponse_Base::e_scale , CMSResponse_Base::e_rid ,
  CMSResponse_Base::e_error , CMSResponse_Base::e_version , CMSResponse_Base::e_email , CMSResponse_Base::e_dbversion ,
  CMSResponse_Base::e_bioseqs
}
 
enum  EMSResponseError { eMSResponseError_none = 0 , eMSResponseError_generalerr = 1 , eMSResponseError_noblastdb = 2 , eMSResponseError_noinput = 3 }
 error return for the entire response More...
 
enum class  CMSScoreSet_Base::E_memberIndex { CMSScoreSet_Base::e__allMandatory = 0 , CMSScoreSet_Base::e_name , CMSScoreSet_Base::e_value }
 
enum class  CMSSearch_Base::E_memberIndex { CMSSearch_Base::e__allMandatory = 0 , CMSSearch_Base::e_request , CMSSearch_Base::e_response }
 
enum class  CMSSearchSettings_Base::E_memberIndex {
  CMSSearchSettings_Base::e__allMandatory = 0 , CMSSearchSettings_Base::e_precursorsearchtype , CMSSearchSettings_Base::e_productsearchtype , CMSSearchSettings_Base::e_ionstosearch ,
  CMSSearchSettings_Base::e_peptol , CMSSearchSettings_Base::e_msmstol , CMSSearchSettings_Base::e_zdep , CMSSearchSettings_Base::e_cutoff ,
  CMSSearchSettings_Base::e_cutlo , CMSSearchSettings_Base::e_cuthi , CMSSearchSettings_Base::e_cutinc , CMSSearchSettings_Base::e_singlewin ,
  CMSSearchSettings_Base::e_doublewin , CMSSearchSettings_Base::e_singlenum , CMSSearchSettings_Base::e_doublenum , CMSSearchSettings_Base::e_fixed ,
  CMSSearchSettings_Base::e_variable , CMSSearchSettings_Base::e_enzyme , CMSSearchSettings_Base::e_missedcleave , CMSSearchSettings_Base::e_hitlistlen ,
  CMSSearchSettings_Base::e_db , CMSSearchSettings_Base::e_tophitnum , CMSSearchSettings_Base::e_minhit , CMSSearchSettings_Base::e_minspectra ,
  CMSSearchSettings_Base::e_scale , CMSSearchSettings_Base::e_maxmods , CMSSearchSettings_Base::e_taxids , CMSSearchSettings_Base::e_chargehandling ,
  CMSSearchSettings_Base::e_usermods , CMSSearchSettings_Base::e_pseudocount , CMSSearchSettings_Base::e_searchb1 , CMSSearchSettings_Base::e_searchctermproduct ,
  CMSSearchSettings_Base::e_maxproductions , CMSSearchSettings_Base::e_minnoenzyme , CMSSearchSettings_Base::e_maxnoenzyme , CMSSearchSettings_Base::e_exactmass ,
  CMSSearchSettings_Base::e_settingid , CMSSearchSettings_Base::e_iterativesettings , CMSSearchSettings_Base::e_precursorcull , CMSSearchSettings_Base::e_infiles ,
  CMSSearchSettings_Base::e_outfiles , CMSSearchSettings_Base::e_nocorrelationscore , CMSSearchSettings_Base::e_probfollowingion , CMSSearchSettings_Base::e_nmethionine ,
  CMSSearchSettings_Base::e_automassadjust , CMSSearchSettings_Base::e_lomasscutoff , CMSSearchSettings_Base::e_libsearchsettings , CMSSearchSettings_Base::e_noprolineions ,
  CMSSearchSettings_Base::e_reversesearch , CMSSearchSettings_Base::e_othersettings , CMSSearchSettings_Base::e_numisotopes , CMSSearchSettings_Base::e_pepppm ,
  CMSSearchSettings_Base::e_msmsppm , CMSSearchSettings_Base::e_reportedhitcount
}
 
enum  EMSSearchType {
  eMSSearchType_monoisotopic = 0 , eMSSearchType_average = 1 , eMSSearchType_monon15 = 2 , eMSSearchType_exact = 3 ,
  eMSSearchType_multiisotope = 4 , eMSSearchType_max = 5
}
 what type of atomic mass to use More...
 
enum  EMSSerialDataFormat {
  eMSSerialDataFormat_none = 0 , eMSSerialDataFormat_asntext = 1 , eMSSerialDataFormat_asnbinary = 2 , eMSSerialDataFormat_xml = 3 ,
  eMSSerialDataFormat_csv = 4 , eMSSerialDataFormat_pepxml = 5 , eMSSerialDataFormat_xmlbz2 = 6
}
 Access to EMSSerialDataFormat's attributes (values, names) as defined in spec. More...
 
enum class  CMSSpectrum_Base::E_memberIndex {
  CMSSpectrum_Base::e__allMandatory = 0 , CMSSpectrum_Base::e_number , CMSSpectrum_Base::e_charge , CMSSpectrum_Base::e_precursormz ,
  CMSSpectrum_Base::e_mz , CMSSpectrum_Base::e_abundance , CMSSpectrum_Base::e_iscale , CMSSpectrum_Base::e_ids ,
  CMSSpectrum_Base::e_namevalue
}
 
enum  EMSSpectrumFileType {
  eMSSpectrumFileType_dta = 0 , eMSSpectrumFileType_dtablank = 1 , eMSSpectrumFileType_dtaxml = 2 , eMSSpectrumFileType_asc = 3 ,
  eMSSpectrumFileType_pkl = 4 , eMSSpectrumFileType_pks = 5 , eMSSpectrumFileType_sciex = 6 , eMSSpectrumFileType_mgf = 7 ,
  eMSSpectrumFileType_unknown = 8 , eMSSpectrumFileType_oms = 9 , eMSSpectrumFileType_omx = 10 , eMSSpectrumFileType_xml = 11 ,
  eMSSpectrumFileType_omxbz2 = 12
}
 Access to EMSSpectrumFileType's attributes (values, names) as defined in spec. More...
 
enum  EMSUserAnnot { eMSUserAnnot_none = 0 , eMSUserAnnot_delete = 1 , eMSUserAnnot_flag = 2 }
 MSHitSet annotation by end user. More...
 
enum  EMSZdependence { eMSZdependence_independent = 0 , eMSZdependence_linearwithz = 1 , eMSZdependence_max = 2 }
 what is the charge dependence of the mass tolerance? More...
 
enum class  CNameValue_Base::E_memberIndex { CNameValue_Base::e__allMandatory = 0 , CNameValue_Base::e_name , CNameValue_Base::e_value }
 

Functions

 CMSBioseq::CMSBioseq (void)
 
 CMSBioseq::~CMSBioseq (void)
 
 CMSBioseq::CMSBioseq (const CMSBioseq &value)
 
CMSBioseqCMSBioseq::operator= (const CMSBioseq &value)
 
 CMSBioseq_Base::CMSBioseq_Base (void)
 
virtual CMSBioseq_Base::~CMSBioseq_Base (void)
 
 CMSBioseq_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CMSBioseq_Base::IsSetOid (void) const
 blast library oid Check if a value has been assigned to Oid data member. More...
 
bool CMSBioseq_Base::CanGetOid (void) const
 Check if it is safe to call GetOid method. More...
 
void CMSBioseq_Base::ResetOid (void)
 Reset Oid data member. More...
 
TOid CMSBioseq_Base::GetOid (void) const
 Get the Oid member data. More...
 
void CMSBioseq_Base::SetOid (TOid value)
 Assign a value to Oid data member. More...
 
TOidCMSBioseq_Base::SetOid (void)
 Assign a value to Oid data member. More...
 
bool CMSBioseq_Base::IsSetSeq (void) const
 Check if a value has been assigned to Seq data member. More...
 
bool CMSBioseq_Base::CanGetSeq (void) const
 Check if it is safe to call GetSeq method. More...
 
void CMSBioseq_Base::ResetSeq (void)
 Reset Seq data member. More...
 
const TSeqCMSBioseq_Base::GetSeq (void) const
 Get the Seq member data. More...
 
void CMSBioseq_Base::SetSeq (TSeq &value)
 Assign a value to Seq data member. More...
 
TSeqCMSBioseq_Base::SetSeq (void)
 Assign a value to Seq data member. More...
 
virtual void CMSBioseq_Base::Reset (void)
 Reset the whole object. More...
 
 CMSBioseq_Base::CMSBioseq_Base (const CMSBioseq_Base &)
 
CMSBioseq_BaseCMSBioseq_Base::operator= (const CMSBioseq_Base &)
 
 CMSBioseqSet_Base::CMSBioseqSet_Base (void)
 
virtual CMSBioseqSet_Base::~CMSBioseqSet_Base (void)
 
 CMSBioseqSet_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CMSBioseqSet_Base::IsSet (void) const
 Check if a value has been assigned to data member. More...
 
bool CMSBioseqSet_Base::CanGet (void) const
 Check if it is safe to call Get method. More...
 
void CMSBioseqSet_Base::Reset (void)
 Reset data member. More...
 
const TdataCMSBioseqSet_Base::Get (void) const
 Get the member data. More...
 
TdataCMSBioseqSet_Base::Set (void)
 Assign a value to data member. More...
 
 CMSBioseqSet_Base::operator const Tdata & (void) const
 Conversion operator to 'const Tdata' type. More...
 
 CMSBioseqSet_Base::operator Tdata & (void)
 Conversion operator to 'Tdata' type. More...
 
 CMSBioseqSet_Base::CMSBioseqSet_Base (const CMSBioseqSet_Base &)
 
CMSBioseqSet_BaseCMSBioseqSet_Base::operator= (const CMSBioseqSet_Base &)
 
 CMSChargeHandle::CMSChargeHandle (void)
 
 CMSChargeHandle::~CMSChargeHandle (void)
 
 CMSChargeHandle::CMSChargeHandle (const CMSChargeHandle &value)
 
CMSChargeHandleCMSChargeHandle::operator= (const CMSChargeHandle &value)
 
 CMSChargeHandle_Base::CMSChargeHandle_Base (void)
 
virtual CMSChargeHandle_Base::~CMSChargeHandle_Base (void)
 
 CMSChargeHandle_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CMSChargeHandle_Base::IsSetCalcplusone (void) const
 do we guess charge one? Check if a value has been assigned to Calcplusone data member. More...
 
bool CMSChargeHandle_Base::CanGetCalcplusone (void) const
 Check if it is safe to call GetCalcplusone method. More...
 
void CMSChargeHandle_Base::ResetCalcplusone (void)
 Reset Calcplusone data member. More...
 
void CMSChargeHandle_Base::SetDefaultCalcplusone (void)
 Assign default value to Calcplusone data member. More...
 
TCalcplusone CMSChargeHandle_Base::GetCalcplusone (void) const
 Get the Calcplusone member data. More...
 
void CMSChargeHandle_Base::SetCalcplusone (TCalcplusone value)
 Assign a value to Calcplusone data member. More...
 
TCalcplusoneCMSChargeHandle_Base::SetCalcplusone (void)
 Assign a value to Calcplusone data member. More...
 
bool CMSChargeHandle_Base::IsSetCalccharge (void) const
 how do we handle charges? Check if a value has been assigned to Calccharge data member. More...
 
bool CMSChargeHandle_Base::CanGetCalccharge (void) const
 Check if it is safe to call GetCalccharge method. More...
 
void CMSChargeHandle_Base::ResetCalccharge (void)
 Reset Calccharge data member. More...
 
void CMSChargeHandle_Base::SetDefaultCalccharge (void)
 Assign default value to Calccharge data member. More...
 
TCalccharge CMSChargeHandle_Base::GetCalccharge (void) const
 Get the Calccharge member data. More...
 
void CMSChargeHandle_Base::SetCalccharge (TCalccharge value)
 Assign a value to Calccharge data member. More...
 
TCalcchargeCMSChargeHandle_Base::SetCalccharge (void)
 Assign a value to Calccharge data member. More...
 
bool CMSChargeHandle_Base::IsSetMincharge (void) const
 if userange, what is the min? Check if a value has been assigned to Mincharge data member. More...
 
bool CMSChargeHandle_Base::CanGetMincharge (void) const
 Check if it is safe to call GetMincharge method. More...
 
void CMSChargeHandle_Base::ResetMincharge (void)
 Reset Mincharge data member. More...
 
void CMSChargeHandle_Base::SetDefaultMincharge (void)
 Assign default value to Mincharge data member. More...
 
TMincharge CMSChargeHandle_Base::GetMincharge (void) const
 Get the Mincharge member data. More...
 
void CMSChargeHandle_Base::SetMincharge (TMincharge value)
 Assign a value to Mincharge data member. More...
 
TMinchargeCMSChargeHandle_Base::SetMincharge (void)
 Assign a value to Mincharge data member. More...
 
bool CMSChargeHandle_Base::IsSetMaxcharge (void) const
 if userange, what is the max? Check if a value has been assigned to Maxcharge data member. More...
 
bool CMSChargeHandle_Base::CanGetMaxcharge (void) const
 Check if it is safe to call GetMaxcharge method. More...
 
void CMSChargeHandle_Base::ResetMaxcharge (void)
 Reset Maxcharge data member. More...
 
void CMSChargeHandle_Base::SetDefaultMaxcharge (void)
 Assign default value to Maxcharge data member. More...
 
TMaxcharge CMSChargeHandle_Base::GetMaxcharge (void) const
 Get the Maxcharge member data. More...
 
void CMSChargeHandle_Base::SetMaxcharge (TMaxcharge value)
 Assign a value to Maxcharge data member. More...
 
TMaxchargeCMSChargeHandle_Base::SetMaxcharge (void)
 Assign a value to Maxcharge data member. More...
 
bool CMSChargeHandle_Base::IsSetConsidermult (void) const
 at which precursor charge to consider +2 ions? Check if a value has been assigned to Considermult data member. More...
 
bool CMSChargeHandle_Base::CanGetConsidermult (void) const
 Check if it is safe to call GetConsidermult method. More...
 
void CMSChargeHandle_Base::ResetConsidermult (void)
 Reset Considermult data member. More...
 
void CMSChargeHandle_Base::SetDefaultConsidermult (void)
 Assign default value to Considermult data member. More...
 
TConsidermult CMSChargeHandle_Base::GetConsidermult (void) const
 Get the Considermult member data. More...
 
void CMSChargeHandle_Base::SetConsidermult (TConsidermult value)
 Assign a value to Considermult data member. More...
 
TConsidermultCMSChargeHandle_Base::SetConsidermult (void)
 Assign a value to Considermult data member. More...
 
bool CMSChargeHandle_Base::IsSetPlusone (void) const
 what % of peaks below precursor needed to call as +1 Check if a value has been assigned to Plusone data member. More...
 
bool CMSChargeHandle_Base::CanGetPlusone (void) const
 Check if it is safe to call GetPlusone method. More...
 
void CMSChargeHandle_Base::ResetPlusone (void)
 Reset Plusone data member. More...
 
TPlusone CMSChargeHandle_Base::GetPlusone (void) const
 Get the Plusone member data. More...
 
void CMSChargeHandle_Base::SetPlusone (TPlusone value)
 Assign a value to Plusone data member. More...
 
TPlusoneCMSChargeHandle_Base::SetPlusone (void)
 Assign a value to Plusone data member. More...
 
bool CMSChargeHandle_Base::IsSetMaxproductcharge (void) const
 maximum product ion charge Check if a value has been assigned to Maxproductcharge data member. More...
 
bool CMSChargeHandle_Base::CanGetMaxproductcharge (void) const
 Check if it is safe to call GetMaxproductcharge method. More...
 
void CMSChargeHandle_Base::ResetMaxproductcharge (void)
 Reset Maxproductcharge data member. More...
 
TMaxproductcharge CMSChargeHandle_Base::GetMaxproductcharge (void) const
 Get the Maxproductcharge member data. More...
 
void CMSChargeHandle_Base::SetMaxproductcharge (TMaxproductcharge value)
 Assign a value to Maxproductcharge data member. More...
 
TMaxproductchargeCMSChargeHandle_Base::SetMaxproductcharge (void)
 Assign a value to Maxproductcharge data member. More...
 
bool CMSChargeHandle_Base::IsSetProdlesspre (void) const
 product charge always less thanor equal to precursor? Check if a value has been assigned to Prodlesspre data member. More...
 
bool CMSChargeHandle_Base::CanGetProdlesspre (void) const
 Check if it is safe to call GetProdlesspre method. More...
 
void CMSChargeHandle_Base::ResetProdlesspre (void)
 Reset Prodlesspre data member. More...
 
TProdlesspre CMSChargeHandle_Base::GetProdlesspre (void) const
 Get the Prodlesspre member data. More...
 
void CMSChargeHandle_Base::SetProdlesspre (TProdlesspre value)
 Assign a value to Prodlesspre data member. More...
 
TProdlesspreCMSChargeHandle_Base::SetProdlesspre (void)
 Assign a value to Prodlesspre data member. More...
 
bool CMSChargeHandle_Base::IsSetNegative (void) const
 negative ion search if -1, positive ion if 1 Check if a value has been assigned to Negative data member. More...
 
bool CMSChargeHandle_Base::CanGetNegative (void) const
 Check if it is safe to call GetNegative method. More...
 
void CMSChargeHandle_Base::ResetNegative (void)
 Reset Negative data member. More...
 
void CMSChargeHandle_Base::SetDefaultNegative (void)
 Assign default value to Negative data member. More...
 
TNegative CMSChargeHandle_Base::GetNegative (void) const
 Get the Negative member data. More...
 
void CMSChargeHandle_Base::SetNegative (TNegative value)
 Assign a value to Negative data member. More...
 
TNegativeCMSChargeHandle_Base::SetNegative (void)
 Assign a value to Negative data member. More...
 
virtual void CMSChargeHandle_Base::Reset (void)
 Reset the whole object. More...
 
 CMSChargeHandle_Base::CMSChargeHandle_Base (const CMSChargeHandle_Base &)
 
CMSChargeHandle_BaseCMSChargeHandle_Base::operator= (const CMSChargeHandle_Base &)
 
 CMSHits_Base::CMSHits_Base (void)
 
virtual CMSHits_Base::~CMSHits_Base (void)
 
 CMSHits_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CMSHits_Base::IsSetEvalue (void) const
 E-value (expect value) Check if a value has been assigned to Evalue data member. More...
 
bool CMSHits_Base::CanGetEvalue (void) const
 Check if it is safe to call GetEvalue method. More...
 
void CMSHits_Base::ResetEvalue (void)
 Reset Evalue data member. More...
 
TEvalue CMSHits_Base::GetEvalue (void) const
 Get the Evalue member data. More...
 
void CMSHits_Base::SetEvalue (TEvalue value)
 Assign a value to Evalue data member. More...
 
TEvalueCMSHits_Base::SetEvalue (void)
 Assign a value to Evalue data member. More...
 
bool CMSHits_Base::IsSetPvalue (void) const
 P-value (probability value) Check if a value has been assigned to Pvalue data member. More...
 
bool CMSHits_Base::CanGetPvalue (void) const
 Check if it is safe to call GetPvalue method. More...
 
void CMSHits_Base::ResetPvalue (void)
 Reset Pvalue data member. More...
 
TPvalue CMSHits_Base::GetPvalue (void) const
 Get the Pvalue member data. More...
 
void CMSHits_Base::SetPvalue (TPvalue value)
 Assign a value to Pvalue data member. More...
 
TPvalueCMSHits_Base::SetPvalue (void)
 Assign a value to Pvalue data member. More...
 
bool CMSHits_Base::IsSetCharge (void) const
 the charge state used in search. More...
 
bool CMSHits_Base::CanGetCharge (void) const
 Check if it is safe to call GetCharge method. More...
 
void CMSHits_Base::ResetCharge (void)
 Reset Charge data member. More...
 
TCharge CMSHits_Base::GetCharge (void) const
 Get the Charge member data. More...
 
void CMSHits_Base::SetCharge (TCharge value)
 Assign a value to Charge data member. More...
 
TChargeCMSHits_Base::SetCharge (void)
 Assign a value to Charge data member. More...
 
bool CMSHits_Base::IsSetPephits (void) const
 peptides that match this hit Check if a value has been assigned to Pephits data member. More...
 
bool CMSHits_Base::CanGetPephits (void) const
 Check if it is safe to call GetPephits method. More...
 
void CMSHits_Base::ResetPephits (void)
 Reset Pephits data member. More...
 
const TPephitsCMSHits_Base::GetPephits (void) const
 Get the Pephits member data. More...
 
TPephitsCMSHits_Base::SetPephits (void)
 Assign a value to Pephits data member. More...
 
bool CMSHits_Base::IsSetMzhits (void) const
 ions hit Check if a value has been assigned to Mzhits data member. More...
 
bool CMSHits_Base::CanGetMzhits (void) const
 Check if it is safe to call GetMzhits method. More...
 
void CMSHits_Base::ResetMzhits (void)
 Reset Mzhits data member. More...
 
const TMzhitsCMSHits_Base::GetMzhits (void) const
 Get the Mzhits member data. More...
 
TMzhitsCMSHits_Base::SetMzhits (void)
 Assign a value to Mzhits data member. More...
 
bool CMSHits_Base::IsSetPepstring (void) const
 the peptide sequence Check if a value has been assigned to Pepstring data member. More...
 
bool CMSHits_Base::CanGetPepstring (void) const
 Check if it is safe to call GetPepstring method. More...
 
void CMSHits_Base::ResetPepstring (void)
 Reset Pepstring data member. More...
 
const TPepstringCMSHits_Base::GetPepstring (void) const
 Get the Pepstring member data. More...
 
void CMSHits_Base::SetPepstring (const TPepstring &value)
 Assign a value to Pepstring data member. More...
 
void CMSHits_Base::SetPepstring (TPepstring &&value)
 
TPepstringCMSHits_Base::SetPepstring (void)
 Assign a value to Pepstring data member. More...
 
bool CMSHits_Base::IsSetMass (void) const
 scaled experimental mass of peptide in Da Check if a value has been assigned to Mass data member. More...
 
bool CMSHits_Base::CanGetMass (void) const
 Check if it is safe to call GetMass method. More...
 
void CMSHits_Base::ResetMass (void)
 Reset Mass data member. More...
 
TMass CMSHits_Base::GetMass (void) const
 Get the Mass member data. More...
 
void CMSHits_Base::SetMass (TMass value)
 Assign a value to Mass data member. More...
 
TMassCMSHits_Base::SetMass (void)
 Assign a value to Mass data member. More...
 
bool CMSHits_Base::IsSetMods (void) const
 modifications to sequence Check if a value has been assigned to Mods data member. More...
 
bool CMSHits_Base::CanGetMods (void) const
 Check if it is safe to call GetMods method. More...
 
void CMSHits_Base::ResetMods (void)
 Reset Mods data member. More...
 
const TModsCMSHits_Base::GetMods (void) const
 Get the Mods member data. More...
 
TModsCMSHits_Base::SetMods (void)
 Assign a value to Mods data member. More...
 
bool CMSHits_Base::IsSetPepstart (void) const
 AA before the peptide (depricated) Check if a value has been assigned to Pepstart data member. More...
 
bool CMSHits_Base::CanGetPepstart (void) const
 Check if it is safe to call GetPepstart method. More...
 
void CMSHits_Base::ResetPepstart (void)
 Reset Pepstart data member. More...
 
const TPepstartCMSHits_Base::GetPepstart (void) const
 Get the Pepstart member data. More...
 
void CMSHits_Base::SetPepstart (const TPepstart &value)
 Assign a value to Pepstart data member. More...
 
void CMSHits_Base::SetPepstart (TPepstart &&value)
 
TPepstartCMSHits_Base::SetPepstart (void)
 Assign a value to Pepstart data member. More...
 
bool CMSHits_Base::IsSetPepstop (void) const
 AA after the peptide (depricated) Check if a value has been assigned to Pepstop data member. More...
 
bool CMSHits_Base::CanGetPepstop (void) const
 Check if it is safe to call GetPepstop method. More...
 
void CMSHits_Base::ResetPepstop (void)
 Reset Pepstop data member. More...
 
const TPepstopCMSHits_Base::GetPepstop (void) const
 Get the Pepstop member data. More...
 
void CMSHits_Base::SetPepstop (const TPepstop &value)
 Assign a value to Pepstop data member. More...
 
void CMSHits_Base::SetPepstop (TPepstop &&value)
 
TPepstopCMSHits_Base::SetPepstop (void)
 Assign a value to Pepstop data member. More...
 
bool CMSHits_Base::IsSetProtlength (void) const
 length of protein hit (depricated) Check if a value has been assigned to Protlength data member. More...
 
bool CMSHits_Base::CanGetProtlength (void) const
 Check if it is safe to call GetProtlength method. More...
 
void CMSHits_Base::ResetProtlength (void)
 Reset Protlength data member. More...
 
TProtlength CMSHits_Base::GetProtlength (void) const
 Get the Protlength member data. More...
 
void CMSHits_Base::SetProtlength (TProtlength value)
 Assign a value to Protlength data member. More...
 
TProtlengthCMSHits_Base::SetProtlength (void)
 Assign a value to Protlength data member. More...
 
bool CMSHits_Base::IsSetTheomass (void) const
 scaled theoretical mass of peptide hit Check if a value has been assigned to Theomass data member. More...
 
bool CMSHits_Base::CanGetTheomass (void) const
 Check if it is safe to call GetTheomass method. More...
 
void CMSHits_Base::ResetTheomass (void)
 Reset Theomass data member. More...
 
TTheomass CMSHits_Base::GetTheomass (void) const
 Get the Theomass member data. More...
 
void CMSHits_Base::SetTheomass (TTheomass value)
 Assign a value to Theomass data member. More...
 
TTheomassCMSHits_Base::SetTheomass (void)
 Assign a value to Theomass data member. More...
 
bool CMSHits_Base::IsSetOid (void) const
 blast library oid (depricated) Check if a value has been assigned to Oid data member. More...
 
bool CMSHits_Base::CanGetOid (void) const
 Check if it is safe to call GetOid method. More...
 
void CMSHits_Base::ResetOid (void)
 Reset Oid data member. More...
 
TOid CMSHits_Base::GetOid (void) const
 Get the Oid member data. More...
 
void CMSHits_Base::SetOid (TOid value)
 Assign a value to Oid data member. More...
 
TOidCMSHits_Base::SetOid (void)
 Assign a value to Oid data member. More...
 
bool CMSHits_Base::IsSetScores (void) const
 optional scores (for library search) Check if a value has been assigned to Scores data member. More...
 
bool CMSHits_Base::CanGetScores (void) const
 Check if it is safe to call GetScores method. More...
 
void CMSHits_Base::ResetScores (void)
 Reset Scores data member. More...
 
const TScoresCMSHits_Base::GetScores (void) const
 Get the Scores member data. More...
 
TScoresCMSHits_Base::SetScores (void)
 Assign a value to Scores data member. More...
 
bool CMSHits_Base::IsSetLibaccession (void) const
 library search accesssion Check if a value has been assigned to Libaccession data member. More...
 
bool CMSHits_Base::CanGetLibaccession (void) const
 Check if it is safe to call GetLibaccession method. More...
 
void CMSHits_Base::ResetLibaccession (void)
 Reset Libaccession data member. More...
 
const TLibaccessionCMSHits_Base::GetLibaccession (void) const
 Get the Libaccession member data. More...
 
void CMSHits_Base::SetLibaccession (const TLibaccession &value)
 Assign a value to Libaccession data member. More...
 
void CMSHits_Base::SetLibaccession (TLibaccession &&value)
 
TLibaccessionCMSHits_Base::SetLibaccession (void)
 Assign a value to Libaccession data member. More...
 
virtual void CMSHits_Base::Reset (void)
 Reset the whole object. More...
 
 CMSHits_Base::CMSHits_Base (const CMSHits_Base &)
 
CMSHits_BaseCMSHits_Base::operator= (const CMSHits_Base &)
 
 CMSHitSet::CMSHitSet (void)
 
 CMSHitSet::~CMSHitSet (void)
 
 CMSHitSet::CMSHitSet (const CMSHitSet &value)
 
CMSHitSetCMSHitSet::operator= (const CMSHitSet &value)
 
 CMSHitSet_Base::CMSHitSet_Base (void)
 
virtual CMSHitSet_Base::~CMSHitSet_Base (void)
 
 CMSHitSet_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CMSHitSet_Base::IsSetNumber (void) const
 unique number of spectrum Check if a value has been assigned to Number data member. More...
 
bool CMSHitSet_Base::CanGetNumber (void) const
 Check if it is safe to call GetNumber method. More...
 
void CMSHitSet_Base::ResetNumber (void)
 Reset Number data member. More...
 
TNumber CMSHitSet_Base::GetNumber (void) const
 Get the Number member data. More...
 
void CMSHitSet_Base::SetNumber (TNumber value)
 Assign a value to Number data member. More...
 
TNumberCMSHitSet_Base::SetNumber (void)
 Assign a value to Number data member. More...
 
bool CMSHitSet_Base::IsSetError (void) const
 error, if any Check if a value has been assigned to Error data member. More...
 
bool CMSHitSet_Base::CanGetError (void) const
 Check if it is safe to call GetError method. More...
 
void CMSHitSet_Base::ResetError (void)
 Reset Error data member. More...
 
TError CMSHitSet_Base::GetError (void) const
 Get the Error member data. More...
 
void CMSHitSet_Base::SetError (TError value)
 Assign a value to Error data member. More...
 
TErrorCMSHitSet_Base::SetError (void)
 Assign a value to Error data member. More...
 
bool CMSHitSet_Base::IsSetHits (void) const
 set of hit to spectrum Check if a value has been assigned to Hits data member. More...
 
bool CMSHitSet_Base::CanGetHits (void) const
 Check if it is safe to call GetHits method. More...
 
void CMSHitSet_Base::ResetHits (void)
 Reset Hits data member. More...
 
const THitsCMSHitSet_Base::GetHits (void) const
 Get the Hits member data. More...
 
THitsCMSHitSet_Base::SetHits (void)
 Assign a value to Hits data member. More...
 
bool CMSHitSet_Base::IsSetIds (void) const
 filenames or other ids of spectra searched Check if a value has been assigned to Ids data member. More...
 
bool CMSHitSet_Base::CanGetIds (void) const
 Check if it is safe to call GetIds method. More...
 
void CMSHitSet_Base::ResetIds (void)
 Reset Ids data member. More...
 
const TIdsCMSHitSet_Base::GetIds (void) const
 Get the Ids member data. More...
 
TIdsCMSHitSet_Base::SetIds (void)
 Assign a value to Ids data member. More...
 
bool CMSHitSet_Base::IsSetNamevalue (void) const
 extra info: retention times, etc. More...
 
bool CMSHitSet_Base::CanGetNamevalue (void) const
 Check if it is safe to call GetNamevalue method. More...
 
void CMSHitSet_Base::ResetNamevalue (void)
 Reset Namevalue data member. More...
 
const TNamevalueCMSHitSet_Base::GetNamevalue (void) const
 Get the Namevalue member data. More...
 
TNamevalueCMSHitSet_Base::SetNamevalue (void)
 Assign a value to Namevalue data member. More...
 
bool CMSHitSet_Base::IsSetSettingid (void) const
 id of the search setting used Check if a value has been assigned to Settingid data member. More...
 
bool CMSHitSet_Base::CanGetSettingid (void) const
 Check if it is safe to call GetSettingid method. More...
 
void CMSHitSet_Base::ResetSettingid (void)
 Reset Settingid data member. More...
 
TSettingid CMSHitSet_Base::GetSettingid (void) const
 Get the Settingid member data. More...
 
void CMSHitSet_Base::SetSettingid (TSettingid value)
 Assign a value to Settingid data member. More...
 
TSettingidCMSHitSet_Base::SetSettingid (void)
 Assign a value to Settingid data member. More...
 
bool CMSHitSet_Base::IsSetUserannotation (void) const
 allows users to flag certain Check if a value has been assigned to Userannotation data member. More...
 
bool CMSHitSet_Base::CanGetUserannotation (void) const
 Check if it is safe to call GetUserannotation method. More...
 
void CMSHitSet_Base::ResetUserannotation (void)
 Reset Userannotation data member. More...
 
TUserannotation CMSHitSet_Base::GetUserannotation (void) const
 Get the Userannotation member data. More...
 
void CMSHitSet_Base::SetUserannotation (TUserannotation value)
 Assign a value to Userannotation data member. More...
 
TUserannotationCMSHitSet_Base::SetUserannotation (void)
 Assign a value to Userannotation data member. More...
 
virtual void CMSHitSet_Base::Reset (void)
 Reset the whole object. More...
 
 CMSHitSet_Base::CMSHitSet_Base (const CMSHitSet_Base &)
 
CMSHitSet_BaseCMSHitSet_Base::operator= (const CMSHitSet_Base &)
 
 CMSImmonium::CMSImmonium (void)
 
 CMSImmonium::~CMSImmonium (void)
 
 CMSImmonium::CMSImmonium (const CMSImmonium &value)
 
CMSImmoniumCMSImmonium::operator= (const CMSImmonium &value)
 
 CMSImmonium_Base::CMSImmonium_Base (void)
 
virtual CMSImmonium_Base::~CMSImmonium_Base (void)
 
 CMSImmonium_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CMSImmonium_Base::IsSetParent (void) const
 parent amino acid Check if a value has been assigned to Parent data member. More...
 
bool CMSImmonium_Base::CanGetParent (void) const
 Check if it is safe to call GetParent method. More...
 
void CMSImmonium_Base::ResetParent (void)
 Reset Parent data member. More...
 
const TParentCMSImmonium_Base::GetParent (void) const
 Get the Parent member data. More...
 
void CMSImmonium_Base::SetParent (const TParent &value)
 Assign a value to Parent data member. More...
 
void CMSImmonium_Base::SetParent (TParent &&value)
 
TParentCMSImmonium_Base::SetParent (void)
 Assign a value to Parent data member. More...
 
bool CMSImmonium_Base::IsSetProduct (void) const
 product ion code Check if a value has been assigned to Product data member. More...
 
bool CMSImmonium_Base::CanGetProduct (void) const
 Check if it is safe to call GetProduct method. More...
 
void CMSImmonium_Base::ResetProduct (void)
 Reset Product data member. More...
 
const TProductCMSImmonium_Base::GetProduct (void) const
 Get the Product member data. More...
 
void CMSImmonium_Base::SetProduct (const TProduct &value)
 Assign a value to Product data member. More...
 
void CMSImmonium_Base::SetProduct (TProduct &&value)
 
TProductCMSImmonium_Base::SetProduct (void)
 Assign a value to Product data member. More...
 
virtual void CMSImmonium_Base::Reset (void)
 Reset the whole object. More...
 
 CMSImmonium_Base::CMSImmonium_Base (const CMSImmonium_Base &)
 
CMSImmonium_BaseCMSImmonium_Base::operator= (const CMSImmonium_Base &)
 
 CMSInFile::CMSInFile (void)
 
 CMSInFile::~CMSInFile (void)
 
 CMSInFile::CMSInFile (const CMSInFile &value)
 
CMSInFileCMSInFile::operator= (const CMSInFile &value)
 
 CMSInFile_Base::CMSInFile_Base (void)
 
virtual CMSInFile_Base::~CMSInFile_Base (void)
 
 CMSInFile_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CMSInFile_Base::IsSetInfile (void) const
 input file name Check if a value has been assigned to Infile data member. More...
 
bool CMSInFile_Base::CanGetInfile (void) const
 Check if it is safe to call GetInfile method. More...
 
void CMSInFile_Base::ResetInfile (void)
 Reset Infile data member. More...
 
const TInfileCMSInFile_Base::GetInfile (void) const
 Get the Infile member data. More...
 
void CMSInFile_Base::SetInfile (const TInfile &value)
 Assign a value to Infile data member. More...
 
void CMSInFile_Base::SetInfile (TInfile &&value)
 
TInfileCMSInFile_Base::SetInfile (void)
 Assign a value to Infile data member. More...
 
bool CMSInFile_Base::IsSetInfiletype (void) const
 input file type Check if a value has been assigned to Infiletype data member. More...
 
bool CMSInFile_Base::CanGetInfiletype (void) const
 Check if it is safe to call GetInfiletype method. More...
 
void CMSInFile_Base::ResetInfiletype (void)
 Reset Infiletype data member. More...
 
TInfiletype CMSInFile_Base::GetInfiletype (void) const
 Get the Infiletype member data. More...
 
void CMSInFile_Base::SetInfiletype (TInfiletype value)
 Assign a value to Infiletype data member. More...
 
TInfiletypeCMSInFile_Base::SetInfiletype (void)
 Assign a value to Infiletype data member. More...
 
virtual void CMSInFile_Base::Reset (void)
 Reset the whole object. More...
 
 CMSInFile_Base::CMSInFile_Base (const CMSInFile_Base &)
 
CMSInFile_BaseCMSInFile_Base::operator= (const CMSInFile_Base &)
 
 CMSIon::CMSIon (void)
 
 CMSIon::~CMSIon (void)
 
 CMSIon::CMSIon (const CMSIon &value)
 
CMSIonCMSIon::operator= (const CMSIon &value)
 
 CMSIon_Base::CMSIon_Base (void)
 
virtual CMSIon_Base::~CMSIon_Base (void)
 
 CMSIon_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CMSIon_Base::IsSetNeutralloss (void) const
 is this peak a neutral loss? Check if a value has been assigned to Neutralloss data member. More...
 
bool CMSIon_Base::CanGetNeutralloss (void) const
 Check if it is safe to call GetNeutralloss method. More...
 
void CMSIon_Base::ResetNeutralloss (void)
 Reset Neutralloss data member. More...
 
TNeutralloss CMSIon_Base::GetNeutralloss (void) const
 Get the Neutralloss member data. More...
 
void CMSIon_Base::SetNeutralloss (TNeutralloss value)
 Assign a value to Neutralloss data member. More...
 
TNeutrallossCMSIon_Base::SetNeutralloss (void)
 Assign a value to Neutralloss data member. More...
 
bool CMSIon_Base::IsSetIsotope (void) const
 isotopic composition of peak Check if a value has been assigned to Isotope data member. More...
 
bool CMSIon_Base::CanGetIsotope (void) const
 Check if it is safe to call GetIsotope method. More...
 
void CMSIon_Base::ResetIsotope (void)
 Reset Isotope data member. More...
 
TIsotope CMSIon_Base::GetIsotope (void) const
 Get the Isotope member data. More...
 
void CMSIon_Base::SetIsotope (TIsotope value)
 Assign a value to Isotope data member. More...
 
TIsotopeCMSIon_Base::SetIsotope (void)
 Assign a value to Isotope data member. More...
 
bool CMSIon_Base::IsSetInternal (void) const
 if iontype is internal, this is the internal sequence Check if a value has been assigned to Internal data member. More...
 
bool CMSIon_Base::CanGetInternal (void) const
 Check if it is safe to call GetInternal method. More...
 
void CMSIon_Base::ResetInternal (void)
 Reset Internal data member. More...
 
const TInternalCMSIon_Base::GetInternal (void) const
 Get the Internal member data. More...
 
void CMSIon_Base::SetInternal (const TInternal &value)
 Assign a value to Internal data member. More...
 
void CMSIon_Base::SetInternal (TInternal &&value)
 
TInternalCMSIon_Base::SetInternal (void)
 Assign a value to Internal data member. More...
 
bool CMSIon_Base::IsSetImmonium (void) const
 if iontype is immonium, show characteristics Check if a value has been assigned to Immonium data member. More...
 
bool CMSIon_Base::CanGetImmonium (void) const
 Check if it is safe to call GetImmonium method. More...
 
void CMSIon_Base::ResetImmonium (void)
 Reset Immonium data member. More...
 
const TImmoniumCMSIon_Base::GetImmonium (void) const
 Get the Immonium member data. More...
 
void CMSIon_Base::SetImmonium (TImmonium &value)
 Assign a value to Immonium data member. More...
 
TImmoniumCMSIon_Base::SetImmonium (void)
 Assign a value to Immonium data member. More...
 
virtual void CMSIon_Base::Reset (void)
 Reset the whole object. More...
 
 CMSIon_Base::CMSIon_Base (const CMSIon_Base &)
 
CMSIon_BaseCMSIon_Base::operator= (const CMSIon_Base &)
 
 CMSIonAnnot::CMSIonAnnot (void)
 
 CMSIonAnnot::~CMSIonAnnot (void)
 
 CMSIonAnnot::CMSIonAnnot (const CMSIonAnnot &value)
 
CMSIonAnnotCMSIonAnnot::operator= (const CMSIonAnnot &value)
 
 CMSIonAnnot_Base::CMSIonAnnot_Base (void)
 
virtual CMSIonAnnot_Base::~CMSIonAnnot_Base (void)
 
 CMSIonAnnot_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CMSIonAnnot_Base::IsSetSuspect (void) const
 is this peak suspect? Check if a value has been assigned to Suspect data member. More...
 
bool CMSIonAnnot_Base::CanGetSuspect (void) const
 Check if it is safe to call GetSuspect method. More...
 
void CMSIonAnnot_Base::ResetSuspect (void)
 Reset Suspect data member. More...
 
TSuspect CMSIonAnnot_Base::GetSuspect (void) const
 Get the Suspect member data. More...
 
void CMSIonAnnot_Base::SetSuspect (TSuspect value)
 Assign a value to Suspect data member. More...
 
TSuspectCMSIonAnnot_Base::SetSuspect (void)
 Assign a value to Suspect data member. More...
 
bool CMSIonAnnot_Base::IsSetMassdiff (void) const
 what is the difference in mass from library spectrum? Check if a value has been assigned to Massdiff data member. More...
 
bool CMSIonAnnot_Base::CanGetMassdiff (void) const
 Check if it is safe to call GetMassdiff method. More...
 
void CMSIonAnnot_Base::ResetMassdiff (void)
 Reset Massdiff data member. More...
 
TMassdiff CMSIonAnnot_Base::GetMassdiff (void) const
 Get the Massdiff member data. More...
 
void CMSIonAnnot_Base::SetMassdiff (TMassdiff value)
 Assign a value to Massdiff data member. More...
 
TMassdiffCMSIonAnnot_Base::SetMassdiff (void)
 Assign a value to Massdiff data member. More...
 
bool CMSIonAnnot_Base::IsSetMissingisotope (void) const
 are the lower mass peaks missing? Check if a value has been assigned to Missingisotope data member. More...
 
bool CMSIonAnnot_Base::CanGetMissingisotope (void) const
 Check if it is safe to call GetMissingisotope method. More...
 
void CMSIonAnnot_Base::ResetMissingisotope (void)
 Reset Missingisotope data member. More...
 
TMissingisotope CMSIonAnnot_Base::GetMissingisotope (void) const
 Get the Missingisotope member data. More...
 
void CMSIonAnnot_Base::SetMissingisotope (TMissingisotope value)
 Assign a value to Missingisotope data member. More...
 
TMissingisotopeCMSIonAnnot_Base::SetMissingisotope (void)
 Assign a value to Missingisotope data member. More...
 
virtual void CMSIonAnnot_Base::Reset (void)
 Reset the whole object. More...
 
 CMSIonAnnot_Base::CMSIonAnnot_Base (const CMSIonAnnot_Base &)
 
CMSIonAnnot_BaseCMSIonAnnot_Base::operator= (const CMSIonAnnot_Base &)
 
 CMSIterativeSettings::CMSIterativeSettings (void)
 
 CMSIterativeSettings::~CMSIterativeSettings (void)
 
 CMSIterativeSettings::CMSIterativeSettings (const CMSIterativeSettings &value)
 
CMSIterativeSettingsCMSIterativeSettings::operator= (const CMSIterativeSettings &value)
 
 CMSIterativeSettings_Base::CMSIterativeSettings_Base (void)
 
virtual CMSIterativeSettings_Base::~CMSIterativeSettings_Base (void)
 
 CMSIterativeSettings_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CMSIterativeSettings_Base::IsSetResearchthresh (void) const
 e-val threshold for re-searching spectra, 0 = always re-search Check if a value has been assigned to Researchthresh data member. More...
 
bool CMSIterativeSettings_Base::CanGetResearchthresh (void) const
 Check if it is safe to call GetResearchthresh method. More...
 
void CMSIterativeSettings_Base::ResetResearchthresh (void)
 Reset Researchthresh data member. More...
 
TResearchthresh CMSIterativeSettings_Base::GetResearchthresh (void) const
 Get the Researchthresh member data. More...
 
void CMSIterativeSettings_Base::SetResearchthresh (TResearchthresh value)
 Assign a value to Researchthresh data member. More...
 
TResearchthreshCMSIterativeSettings_Base::SetResearchthresh (void)
 Assign a value to Researchthresh data member. More...
 
bool CMSIterativeSettings_Base::IsSetSubsetthresh (void) const
 e-val threshold for picking sequence subset, 0 = all sequences Check if a value has been assigned to Subsetthresh data member. More...
 
bool CMSIterativeSettings_Base::CanGetSubsetthresh (void) const
 Check if it is safe to call GetSubsetthresh method. More...
 
void CMSIterativeSettings_Base::ResetSubsetthresh (void)
 Reset Subsetthresh data member. More...
 
TSubsetthresh CMSIterativeSettings_Base::GetSubsetthresh (void) const
 Get the Subsetthresh member data. More...
 
void CMSIterativeSettings_Base::SetSubsetthresh (TSubsetthresh value)
 Assign a value to Subsetthresh data member. More...
 
TSubsetthreshCMSIterativeSettings_Base::SetSubsetthresh (void)
 Assign a value to Subsetthresh data member. More...
 
bool CMSIterativeSettings_Base::IsSetReplacethresh (void) const
 e-val threshold for replacing hitset, 0 = only if better Check if a value has been assigned to Replacethresh data member. More...
 
bool CMSIterativeSettings_Base::CanGetReplacethresh (void) const
 Check if it is safe to call GetReplacethresh method. More...
 
void CMSIterativeSettings_Base::ResetReplacethresh (void)
 Reset Replacethresh data member. More...
 
TReplacethresh CMSIterativeSettings_Base::GetReplacethresh (void) const
 Get the Replacethresh member data. More...
 
void CMSIterativeSettings_Base::SetReplacethresh (TReplacethresh value)
 Assign a value to Replacethresh data member. More...
 
TReplacethreshCMSIterativeSettings_Base::SetReplacethresh (void)
 Assign a value to Replacethresh data member. More...
 
virtual void CMSIterativeSettings_Base::Reset (void)
 Reset the whole object. More...
 
 CMSIterativeSettings_Base::CMSIterativeSettings_Base (const CMSIterativeSettings_Base &)
 
CMSIterativeSettings_BaseCMSIterativeSettings_Base::operator= (const CMSIterativeSettings_Base &)
 
 CMSLibrarySettings::CMSLibrarySettings (void)
 
 CMSLibrarySettings::~CMSLibrarySettings (void)
 
 CMSLibrarySettings::CMSLibrarySettings (const CMSLibrarySettings &value)
 
CMSLibrarySettingsCMSLibrarySettings::operator= (const CMSLibrarySettings &value)
 
 CMSLibrarySettings_Base::CMSLibrarySettings_Base (void)
 
virtual CMSLibrarySettings_Base::~CMSLibrarySettings_Base (void)
 
 CMSLibrarySettings_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CMSLibrarySettings_Base::IsSetLibnames (void) const
 names of search libraries Check if a value has been assigned to Libnames data member. More...
 
bool CMSLibrarySettings_Base::CanGetLibnames (void) const
 Check if it is safe to call GetLibnames method. More...
 
void CMSLibrarySettings_Base::ResetLibnames (void)
 Reset Libnames data member. More...
 
const TLibnamesCMSLibrarySettings_Base::GetLibnames (void) const
 Get the Libnames member data. More...
 
TLibnamesCMSLibrarySettings_Base::SetLibnames (void)
 Assign a value to Libnames data member. More...
 
bool CMSLibrarySettings_Base::IsSetPresearch (void) const
 should there be a restriction on precursor mass? Check if a value has been assigned to Presearch data member. More...
 
bool CMSLibrarySettings_Base::CanGetPresearch (void) const
 Check if it is safe to call GetPresearch method. More...
 
void CMSLibrarySettings_Base::ResetPresearch (void)
 Reset Presearch data member. More...
 
TPresearch CMSLibrarySettings_Base::GetPresearch (void) const
 Get the Presearch member data. More...
 
void CMSLibrarySettings_Base::SetPresearch (TPresearch value)
 Assign a value to Presearch data member. More...
 
TPresearchCMSLibrarySettings_Base::SetPresearch (void)
 Assign a value to Presearch data member. More...
 
bool CMSLibrarySettings_Base::IsSetUseomssascore (void) const
 use the omssa score? Check if a value has been assigned to Useomssascore data member. More...
 
bool CMSLibrarySettings_Base::CanGetUseomssascore (void) const
 Check if it is safe to call GetUseomssascore method. More...
 
void CMSLibrarySettings_Base::ResetUseomssascore (void)
 Reset Useomssascore data member. More...
 
TUseomssascore CMSLibrarySettings_Base::GetUseomssascore (void) const
 Get the Useomssascore member data. More...
 
void CMSLibrarySettings_Base::SetUseomssascore (TUseomssascore value)
 Assign a value to Useomssascore data member. More...
 
TUseomssascoreCMSLibrarySettings_Base::SetUseomssascore (void)
 Assign a value to Useomssascore data member. More...
 
bool CMSLibrarySettings_Base::IsSetUsereplicatescore (void) const
 use the number of replicates score? Check if a value has been assigned to Usereplicatescore data member. More...
 
bool CMSLibrarySettings_Base::CanGetUsereplicatescore (void) const
 Check if it is safe to call GetUsereplicatescore method. More...
 
void CMSLibrarySettings_Base::ResetUsereplicatescore (void)
 Reset Usereplicatescore data member. More...
 
TUsereplicatescore CMSLibrarySettings_Base::GetUsereplicatescore (void) const
 Get the Usereplicatescore member data. More...
 
void CMSLibrarySettings_Base::SetUsereplicatescore (TUsereplicatescore value)
 Assign a value to Usereplicatescore data member. More...
 
TUsereplicatescoreCMSLibrarySettings_Base::SetUsereplicatescore (void)
 Assign a value to Usereplicatescore data member. More...
 
bool CMSLibrarySettings_Base::IsSetQtofscore (void) const
 use the qtof score? Check if a value has been assigned to Qtofscore data member. More...
 
bool CMSLibrarySettings_Base::CanGetQtofscore (void) const
 Check if it is safe to call GetQtofscore method. More...
 
void CMSLibrarySettings_Base::ResetQtofscore (void)
 Reset Qtofscore data member. More...
 
TQtofscore CMSLibrarySettings_Base::GetQtofscore (void) const
 Get the Qtofscore member data. More...
 
void CMSLibrarySettings_Base::SetQtofscore (TQtofscore value)
 Assign a value to Qtofscore data member. More...
 
TQtofscoreCMSLibrarySettings_Base::SetQtofscore (void)
 Assign a value to Qtofscore data member. More...
 
virtual void CMSLibrarySettings_Base::Reset (void)
 Reset the whole object. More...
 
 CMSLibrarySettings_Base::CMSLibrarySettings_Base (const CMSLibrarySettings_Base &)
 
CMSLibrarySettings_BaseCMSLibrarySettings_Base::operator= (const CMSLibrarySettings_Base &)
 
 CMSMassSet::CMSMassSet (void)
 
 CMSMassSet::~CMSMassSet (void)
 
 CMSMassSet::CMSMassSet (const CMSMassSet &value)
 
CMSMassSetCMSMassSet::operator= (const CMSMassSet &value)
 
 CMSMassSet_Base::CMSMassSet_Base (void)
 
virtual CMSMassSet_Base::~CMSMassSet_Base (void)
 
 CMSMassSet_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CMSMassSet_Base::IsSetMonomass (void) const
 Check if a value has been assigned to Monomass data member. More...
 
bool CMSMassSet_Base::CanGetMonomass (void) const
 Check if it is safe to call GetMonomass method. More...
 
void CMSMassSet_Base::ResetMonomass (void)
 Reset Monomass data member. More...
 
TMonomass CMSMassSet_Base::GetMonomass (void) const
 Get the Monomass member data. More...
 
void CMSMassSet_Base::SetMonomass (TMonomass value)
 Assign a value to Monomass data member. More...
 
TMonomassCMSMassSet_Base::SetMonomass (void)
 Assign a value to Monomass data member. More...
 
bool CMSMassSet_Base::IsSetAveragemass (void) const
 Check if a value has been assigned to Averagemass data member. More...
 
bool CMSMassSet_Base::CanGetAveragemass (void) const
 Check if it is safe to call GetAveragemass method. More...
 
void CMSMassSet_Base::ResetAveragemass (void)
 Reset Averagemass data member. More...
 
TAveragemass CMSMassSet_Base::GetAveragemass (void) const
 Get the Averagemass member data. More...
 
void CMSMassSet_Base::SetAveragemass (TAveragemass value)
 Assign a value to Averagemass data member. More...
 
TAveragemassCMSMassSet_Base::SetAveragemass (void)
 Assign a value to Averagemass data member. More...
 
bool CMSMassSet_Base::IsSetN15mass (void) const
 Check if a value has been assigned to N15mass data member. More...
 
bool CMSMassSet_Base::CanGetN15mass (void) const
 Check if it is safe to call GetN15mass method. More...
 
void CMSMassSet_Base::ResetN15mass (void)
 Reset N15mass data member. More...
 
TN15mass CMSMassSet_Base::GetN15mass (void) const
 Get the N15mass member data. More...
 
void CMSMassSet_Base::SetN15mass (TN15mass value)
 Assign a value to N15mass data member. More...
 
TN15massCMSMassSet_Base::SetN15mass (void)
 Assign a value to N15mass data member. More...
 
virtual void CMSMassSet_Base::Reset (void)
 Reset the whole object. More...
 
 CMSMassSet_Base::CMSMassSet_Base (const CMSMassSet_Base &)
 
CMSMassSet_BaseCMSMassSet_Base::operator= (const CMSMassSet_Base &)
 
 CMSModHit::CMSModHit (void)
 
 CMSModHit::~CMSModHit (void)
 
 CMSModHit::CMSModHit (const CMSModHit &value)
 
CMSModHitCMSModHit::operator= (const CMSModHit &value)
 
 CMSModHit_Base::CMSModHit_Base (void)
 
virtual CMSModHit_Base::~CMSModHit_Base (void)
 
 CMSModHit_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CMSModHit_Base::IsSetSite (void) const
 the position in the peptide Check if a value has been assigned to Site data member. More...
 
bool CMSModHit_Base::CanGetSite (void) const
 Check if it is safe to call GetSite method. More...
 
void CMSModHit_Base::ResetSite (void)
 Reset Site data member. More...
 
TSite CMSModHit_Base::GetSite (void) const
 Get the Site member data. More...
 
void CMSModHit_Base::SetSite (TSite value)
 Assign a value to Site data member. More...
 
TSiteCMSModHit_Base::SetSite (void)
 Assign a value to Site data member. More...
 
bool CMSModHit_Base::IsSetModtype (void) const
 the type of modification Check if a value has been assigned to Modtype data member. More...
 
bool CMSModHit_Base::CanGetModtype (void) const
 Check if it is safe to call GetModtype method. More...
 
void CMSModHit_Base::ResetModtype (void)
 Reset Modtype data member. More...
 
TModtype CMSModHit_Base::GetModtype (void) const
 Get the Modtype member data. More...
 
void CMSModHit_Base::SetModtype (TModtype value)
 Assign a value to Modtype data member. More...
 
TModtypeCMSModHit_Base::SetModtype (void)
 Assign a value to Modtype data member. More...
 
virtual void CMSModHit_Base::Reset (void)
 Reset the whole object. More...
 
 CMSModHit_Base::CMSModHit_Base (const CMSModHit_Base &)
 
CMSModHit_BaseCMSModHit_Base::operator= (const CMSModHit_Base &)
 
 CMSModSpec::CMSModSpec (void)
 
 CMSModSpec::~CMSModSpec (void)
 
 CMSModSpec::CMSModSpec (const CMSModSpec &value)
 
CMSModSpecCMSModSpec::operator= (const CMSModSpec &value)
 
 CMSModSpec_Base::CMSModSpec_Base (void)
 
virtual CMSModSpec_Base::~CMSModSpec_Base (void)
 
 CMSModSpec_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CMSModSpec_Base::IsSetMod (void) const
 what is the mod Check if a value has been assigned to Mod data member. More...
 
bool CMSModSpec_Base::CanGetMod (void) const
 Check if it is safe to call GetMod method. More...
 
void CMSModSpec_Base::ResetMod (void)
 Reset Mod data member. More...
 
TMod CMSModSpec_Base::GetMod (void) const
 Get the Mod member data. More...
 
void CMSModSpec_Base::SetMod (TMod value)
 Assign a value to Mod data member. More...
 
TModCMSModSpec_Base::SetMod (void)
 Assign a value to Mod data member. More...
 
bool CMSModSpec_Base::IsSetType (void) const
 modification type Check if a value has been assigned to Type data member. More...
 
bool CMSModSpec_Base::CanGetType (void) const
 Check if it is safe to call GetType method. More...
 
void CMSModSpec_Base::ResetType (void)
 Reset Type data member. More...
 
TType CMSModSpec_Base::GetType (void) const
 Get the Type member data. More...
 
void CMSModSpec_Base::SetType (TType value)
 Assign a value to Type data member. More...
 
TTypeCMSModSpec_Base::SetType (void)
 Assign a value to Type data member. More...
 
bool CMSModSpec_Base::IsSetName (void) const
 friendly name of mod Check if a value has been assigned to Name data member. More...
 
bool CMSModSpec_Base::CanGetName (void) const
 Check if it is safe to call GetName method. More...
 
void CMSModSpec_Base::ResetName (void)
 Reset Name data member. More...
 
const TNameCMSModSpec_Base::GetName (void) const
 Get the Name member data. More...
 
void CMSModSpec_Base::SetName (const TName &value)
 Assign a value to Name data member. More...
 
void CMSModSpec_Base::SetName (TName &&value)
 
TNameCMSModSpec_Base::SetName (void)
 Assign a value to Name data member. More...
 
bool CMSModSpec_Base::IsSetMonomass (void) const
 monoisotopic mass Check if a value has been assigned to Monomass data member. More...
 
bool CMSModSpec_Base::CanGetMonomass (void) const
 Check if it is safe to call GetMonomass method. More...
 
void CMSModSpec_Base::ResetMonomass (void)
 Reset Monomass data member. More...
 
TMonomass CMSModSpec_Base::GetMonomass (void) const
 Get the Monomass member data. More...
 
void CMSModSpec_Base::SetMonomass (TMonomass value)
 Assign a value to Monomass data member. More...
 
TMonomassCMSModSpec_Base::SetMonomass (void)
 Assign a value to Monomass data member. More...
 
bool CMSModSpec_Base::IsSetAveragemass (void) const
 average mass Check if a value has been assigned to Averagemass data member. More...
 
bool CMSModSpec_Base::CanGetAveragemass (void) const
 Check if it is safe to call GetAveragemass method. More...
 
void CMSModSpec_Base::ResetAveragemass (void)
 Reset Averagemass data member. More...
 
TAveragemass CMSModSpec_Base::GetAveragemass (void) const
 Get the Averagemass member data. More...
 
void CMSModSpec_Base::SetAveragemass (TAveragemass value)
 Assign a value to Averagemass data member. More...
 
TAveragemassCMSModSpec_Base::SetAveragemass (void)
 Assign a value to Averagemass data member. More...
 
bool CMSModSpec_Base::IsSetN15mass (void) const
 monoisotopic n15 mass Check if a value has been assigned to N15mass data member. More...
 
bool CMSModSpec_Base::CanGetN15mass (void) const
 Check if it is safe to call GetN15mass method. More...
 
void CMSModSpec_Base::ResetN15mass (void)
 Reset N15mass data member. More...
 
TN15mass CMSModSpec_Base::GetN15mass (void) const
 Get the N15mass member data. More...
 
void CMSModSpec_Base::SetN15mass (TN15mass value)
 Assign a value to N15mass data member. More...
 
TN15massCMSModSpec_Base::SetN15mass (void)
 Assign a value to N15mass data member. More...
 
bool CMSModSpec_Base::IsSetResidues (void) const
 residues to apply mod to Check if a value has been assigned to Residues data member. More...
 
bool CMSModSpec_Base::CanGetResidues (void) const
 Check if it is safe to call GetResidues method. More...
 
void CMSModSpec_Base::ResetResidues (void)
 Reset Residues data member. More...
 
const TResiduesCMSModSpec_Base::GetResidues (void) const
 Get the Residues member data. More...
 
TResiduesCMSModSpec_Base::SetResidues (void)
 Assign a value to Residues data member. More...
 
bool CMSModSpec_Base::IsSetNeutralloss (void) const
 loss after precursor mass determination Check if a value has been assigned to Neutralloss data member. More...
 
bool CMSModSpec_Base::CanGetNeutralloss (void) const
 Check if it is safe to call GetNeutralloss method. More...
 
void CMSModSpec_Base::ResetNeutralloss (void)
 Reset Neutralloss data member. More...
 
const TNeutrallossCMSModSpec_Base::GetNeutralloss (void) const
 Get the Neutralloss member data. More...
 
void CMSModSpec_Base::SetNeutralloss (TNeutralloss &value)
 Assign a value to Neutralloss data member. More...
 
TNeutrallossCMSModSpec_Base::SetNeutralloss (void)
 Assign a value to Neutralloss data member. More...
 
bool CMSModSpec_Base::IsSetUnimod (void) const
 the equivalent Unimod Accession number Check if a value has been assigned to Unimod data member. More...
 
bool CMSModSpec_Base::CanGetUnimod (void) const
 Check if it is safe to call GetUnimod method. More...
 
void CMSModSpec_Base::ResetUnimod (void)
 Reset Unimod data member. More...
 
TUnimod CMSModSpec_Base::GetUnimod (void) const
 Get the Unimod member data. More...
 
void CMSModSpec_Base::SetUnimod (TUnimod value)
 Assign a value to Unimod data member. More...
 
TUnimodCMSModSpec_Base::SetUnimod (void)
 Assign a value to Unimod data member. More...
 
bool CMSModSpec_Base::IsSetPsi_ms (void) const
 the PSI-MS equivalent name Check if a value has been assigned to Psi_ms data member. More...
 
bool CMSModSpec_Base::CanGetPsi_ms (void) const
 Check if it is safe to call GetPsi_ms method. More...
 
void CMSModSpec_Base::ResetPsi_ms (void)
 Reset Psi_ms data member. More...
 
const TPsi_msCMSModSpec_Base::GetPsi_ms (void) const
 Get the Psi_ms member data. More...
 
void CMSModSpec_Base::SetPsi_ms (const TPsi_ms &value)
 Assign a value to Psi_ms data member. More...
 
void CMSModSpec_Base::SetPsi_ms (TPsi_ms &&value)
 
TPsi_msCMSModSpec_Base::SetPsi_ms (void)
 Assign a value to Psi_ms data member. More...
 
virtual void CMSModSpec_Base::Reset (void)
 Reset the whole object. More...
 
 CMSModSpec_Base::CMSModSpec_Base (const CMSModSpec_Base &)
 
CMSModSpec_BaseCMSModSpec_Base::operator= (const CMSModSpec_Base &)
 
 CMSModSpecSet_Base::CMSModSpecSet_Base (void)
 
virtual CMSModSpecSet_Base::~CMSModSpecSet_Base (void)
 
 CMSModSpecSet_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CMSModSpecSet_Base::IsSet (void) const
 Check if a value has been assigned to data member. More...
 
bool CMSModSpecSet_Base::CanGet (void) const
 Check if it is safe to call Get method. More...
 
void CMSModSpecSet_Base::Reset (void)
 Reset data member. More...
 
const TdataCMSModSpecSet_Base::Get (void) const
 Get the member data. More...
 
TdataCMSModSpecSet_Base::Set (void)
 Assign a value to data member. More...
 
 CMSModSpecSet_Base::operator const Tdata & (void) const
 Conversion operator to 'const Tdata' type. More...
 
 CMSModSpecSet_Base::operator Tdata & (void)
 Conversion operator to 'Tdata' type. More...
 
 CMSModSpecSet_Base::CMSModSpecSet_Base (const CMSModSpecSet_Base &)
 
CMSModSpecSet_BaseCMSModSpecSet_Base::operator= (const CMSModSpecSet_Base &)
 
 CMSMZHit::CMSMZHit (void)
 
 CMSMZHit::~CMSMZHit (void)
 
 CMSMZHit::CMSMZHit (const CMSMZHit &value)
 
CMSMZHitCMSMZHit::operator= (const CMSMZHit &value)
 
 CMSMZHit_Base::CMSMZHit_Base (void)
 
virtual CMSMZHit_Base::~CMSMZHit_Base (void)
 
 CMSMZHit_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CMSMZHit_Base::IsSetIon (void) const
 ion type, e.g. More...
 
bool CMSMZHit_Base::CanGetIon (void) const
 Check if it is safe to call GetIon method. More...
 
void CMSMZHit_Base::ResetIon (void)
 Reset Ion data member. More...
 
TIon CMSMZHit_Base::GetIon (void) const
 Get the Ion member data. More...
 
void CMSMZHit_Base::SetIon (TIon value)
 Assign a value to Ion data member. More...
 
TIonCMSMZHit_Base::SetIon (void)
 Assign a value to Ion data member. More...
 
bool CMSMZHit_Base::IsSetCharge (void) const
 ion charge Check if a value has been assigned to Charge data member. More...
 
bool CMSMZHit_Base::CanGetCharge (void) const
 Check if it is safe to call GetCharge method. More...
 
void CMSMZHit_Base::ResetCharge (void)
 Reset Charge data member. More...
 
TCharge CMSMZHit_Base::GetCharge (void) const
 Get the Charge member data. More...
 
void CMSMZHit_Base::SetCharge (TCharge value)
 Assign a value to Charge data member. More...
 
TChargeCMSMZHit_Base::SetCharge (void)
 Assign a value to Charge data member. More...
 
bool CMSMZHit_Base::IsSetNumber (void) const
 the sequential number of the ion Check if a value has been assigned to Number data member. More...
 
bool CMSMZHit_Base::CanGetNumber (void) const
 Check if it is safe to call GetNumber method. More...
 
void CMSMZHit_Base::ResetNumber (void)
 Reset Number data member. More...
 
TNumber CMSMZHit_Base::GetNumber (void) const
 Get the Number member data. More...
 
void CMSMZHit_Base::SetNumber (TNumber value)
 Assign a value to Number data member. More...
 
TNumberCMSMZHit_Base::SetNumber (void)
 Assign a value to Number data member. More...
 
bool CMSMZHit_Base::IsSetMz (void) const
 scaled m/z value in Da Check if a value has been assigned to Mz data member. More...
 
bool CMSMZHit_Base::CanGetMz (void) const
 Check if it is safe to call GetMz method. More...
 
void CMSMZHit_Base::ResetMz (void)
 Reset Mz data member. More...
 
TMz CMSMZHit_Base::GetMz (void) const
 Get the Mz member data. More...
 
void CMSMZHit_Base::SetMz (TMz value)
 Assign a value to Mz data member. More...
 
TMzCMSMZHit_Base::SetMz (void)
 Assign a value to Mz data member. More...
 
bool CMSMZHit_Base::IsSetIndex (void) const
 the index of the peak in the original spectrum Check if a value has been assigned to Index data member. More...
 
bool CMSMZHit_Base::CanGetIndex (void) const
 Check if it is safe to call GetIndex method. More...
 
void CMSMZHit_Base::ResetIndex (void)
 Reset Index data member. More...
 
TIndex CMSMZHit_Base::GetIndex (void) const
 Get the Index member data. More...
 
void CMSMZHit_Base::SetIndex (TIndex value)
 Assign a value to Index data member. More...
 
TIndexCMSMZHit_Base::SetIndex (void)
 Assign a value to Index data member. More...
 
bool CMSMZHit_Base::IsSetMoreion (void) const
 more information about the ion type Check if a value has been assigned to Moreion data member. More...
 
bool CMSMZHit_Base::CanGetMoreion (void) const
 Check if it is safe to call GetMoreion method. More...
 
void CMSMZHit_Base::ResetMoreion (void)
 Reset Moreion data member. More...
 
const TMoreionCMSMZHit_Base::GetMoreion (void) const
 Get the Moreion member data. More...
 
void CMSMZHit_Base::SetMoreion (TMoreion &value)
 Assign a value to Moreion data member. More...
 
TMoreionCMSMZHit_Base::SetMoreion (void)
 Assign a value to Moreion data member. More...
 
bool CMSMZHit_Base::IsSetAnnotation (void) const
 annotations on the ion Check if a value has been assigned to Annotation data member. More...
 
bool CMSMZHit_Base::CanGetAnnotation (void) const
 Check if it is safe to call GetAnnotation method. More...
 
void CMSMZHit_Base::ResetAnnotation (void)
 Reset Annotation data member. More...
 
const TAnnotationCMSMZHit_Base::GetAnnotation (void) const
 Get the Annotation member data. More...
 
void CMSMZHit_Base::SetAnnotation (TAnnotation &value)
 Assign a value to Annotation data member. More...
 
TAnnotationCMSMZHit_Base::SetAnnotation (void)
 Assign a value to Annotation data member. More...
 
virtual void CMSMZHit_Base::Reset (void)
 Reset the whole object. More...
 
 CMSMZHit_Base::CMSMZHit_Base (const CMSMZHit_Base &)
 
CMSMZHit_BaseCMSMZHit_Base::operator= (const CMSMZHit_Base &)
 
 CMSOutFile::CMSOutFile (void)
 
 CMSOutFile::~CMSOutFile (void)
 
 CMSOutFile::CMSOutFile (const CMSOutFile &value)
 
CMSOutFileCMSOutFile::operator= (const CMSOutFile &value)
 
 CMSOutFile_Base::CMSOutFile_Base (void)
 
virtual CMSOutFile_Base::~CMSOutFile_Base (void)
 
 CMSOutFile_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CMSOutFile_Base::IsSetOutfile (void) const
 output file name Check if a value has been assigned to Outfile data member. More...
 
bool CMSOutFile_Base::CanGetOutfile (void) const
 Check if it is safe to call GetOutfile method. More...
 
void CMSOutFile_Base::ResetOutfile (void)
 Reset Outfile data member. More...
 
const TOutfileCMSOutFile_Base::GetOutfile (void) const
 Get the Outfile member data. More...
 
void CMSOutFile_Base::SetOutfile (const TOutfile &value)
 Assign a value to Outfile data member. More...
 
void CMSOutFile_Base::SetOutfile (TOutfile &&value)
 
TOutfileCMSOutFile_Base::SetOutfile (void)
 Assign a value to Outfile data member. More...
 
bool CMSOutFile_Base::IsSetOutfiletype (void) const
 output file type Check if a value has been assigned to Outfiletype data member. More...
 
bool CMSOutFile_Base::CanGetOutfiletype (void) const
 Check if it is safe to call GetOutfiletype method. More...
 
void CMSOutFile_Base::ResetOutfiletype (void)
 Reset Outfiletype data member. More...
 
TOutfiletype CMSOutFile_Base::GetOutfiletype (void) const
 Get the Outfiletype member data. More...
 
void CMSOutFile_Base::SetOutfiletype (TOutfiletype value)
 Assign a value to Outfiletype data member. More...
 
TOutfiletypeCMSOutFile_Base::SetOutfiletype (void)
 Assign a value to Outfiletype data member. More...
 
bool CMSOutFile_Base::IsSetIncluderequest (void) const
 should the output include the request? Check if a value has been assigned to Includerequest data member. More...
 
bool CMSOutFile_Base::CanGetIncluderequest (void) const
 Check if it is safe to call GetIncluderequest method. More...
 
void CMSOutFile_Base::ResetIncluderequest (void)
 Reset Includerequest data member. More...
 
TIncluderequest CMSOutFile_Base::GetIncluderequest (void) const
 Get the Includerequest member data. More...
 
void CMSOutFile_Base::SetIncluderequest (TIncluderequest value)
 Assign a value to Includerequest data member. More...
 
TIncluderequestCMSOutFile_Base::SetIncluderequest (void)
 Assign a value to Includerequest data member. More...
 
virtual void CMSOutFile_Base::Reset (void)
 Reset the whole object. More...
 
 CMSOutFile_Base::CMSOutFile_Base (const CMSOutFile_Base &)
 
CMSOutFile_BaseCMSOutFile_Base::operator= (const CMSOutFile_Base &)
 
 CMSPepHit::CMSPepHit (void)
 
 CMSPepHit::~CMSPepHit (void)
 
 CMSPepHit::CMSPepHit (const CMSPepHit &value)
 
CMSPepHitCMSPepHit::operator= (const CMSPepHit &value)
 
 CMSPepHit_Base::CMSPepHit_Base (void)
 
virtual CMSPepHit_Base::~CMSPepHit_Base (void)
 
 CMSPepHit_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CMSPepHit_Base::IsSetStart (void) const
 start position (inclusive) in sequence Check if a value has been assigned to Start data member. More...
 
bool CMSPepHit_Base::CanGetStart (void) const
 Check if it is safe to call GetStart method. More...
 
void CMSPepHit_Base::ResetStart (void)
 Reset Start data member. More...
 
TStart CMSPepHit_Base::GetStart (void) const
 Get the Start member data. More...
 
void CMSPepHit_Base::SetStart (TStart value)
 Assign a value to Start data member. More...
 
TStartCMSPepHit_Base::SetStart (void)
 Assign a value to Start data member. More...
 
bool CMSPepHit_Base::IsSetStop (void) const
 stop position (inclusive) in sequence Check if a value has been assigned to Stop data member. More...
 
bool CMSPepHit_Base::CanGetStop (void) const
 Check if it is safe to call GetStop method. More...
 
void CMSPepHit_Base::ResetStop (void)
 Reset Stop data member. More...
 
TStop CMSPepHit_Base::GetStop (void) const
 Get the Stop member data. More...
 
void CMSPepHit_Base::SetStop (TStop value)
 Assign a value to Stop data member. More...
 
TStopCMSPepHit_Base::SetStop (void)
 Assign a value to Stop data member. More...
 
bool CMSPepHit_Base::IsSetGi (void) const
 genbank identifier Check if a value has been assigned to Gi data member. More...
 
bool CMSPepHit_Base::CanGetGi (void) const
 Check if it is safe to call GetGi method. More...
 
void CMSPepHit_Base::ResetGi (void)
 Reset Gi data member. More...
 
TGi CMSPepHit_Base::GetGi (void) const
 Get the Gi member data. More...
 
void CMSPepHit_Base::SetGi (TGi value)
 Assign a value to Gi data member. More...
 
TGiCMSPepHit_Base::SetGi (void)
 Assign a value to Gi data member. More...
 
bool CMSPepHit_Base::IsSetAccession (void) const
 sequence accession Check if a value has been assigned to Accession data member. More...
 
bool CMSPepHit_Base::CanGetAccession (void) const
 Check if it is safe to call GetAccession method. More...
 
void CMSPepHit_Base::ResetAccession (void)
 Reset Accession data member. More...
 
const TAccessionCMSPepHit_Base::GetAccession (void) const
 Get the Accession member data. More...
 
void CMSPepHit_Base::SetAccession (const TAccession &value)
 Assign a value to Accession data member. More...
 
void CMSPepHit_Base::SetAccession (TAccession &&value)
 
TAccessionCMSPepHit_Base::SetAccession (void)
 Assign a value to Accession data member. More...
 
bool CMSPepHit_Base::IsSetDefline (void) const
 sequence description Check if a value has been assigned to Defline data member. More...
 
bool CMSPepHit_Base::CanGetDefline (void) const
 Check if it is safe to call GetDefline method. More...
 
void CMSPepHit_Base::ResetDefline (void)
 Reset Defline data member. More...
 
const TDeflineCMSPepHit_Base::GetDefline (void) const
 Get the Defline member data. More...
 
void CMSPepHit_Base::SetDefline (const TDefline &value)
 Assign a value to Defline data member. More...
 
void CMSPepHit_Base::SetDefline (TDefline &&value)
 
TDeflineCMSPepHit_Base::SetDefline (void)
 Assign a value to Defline data member. More...
 
bool CMSPepHit_Base::IsSetProtlength (void) const
 length of protein Check if a value has been assigned to Protlength data member. More...
 
bool CMSPepHit_Base::CanGetProtlength (void) const
 Check if it is safe to call GetProtlength method. More...
 
void CMSPepHit_Base::ResetProtlength (void)
 Reset Protlength data member. More...
 
TProtlength CMSPepHit_Base::GetProtlength (void) const
 Get the Protlength member data. More...
 
void CMSPepHit_Base::SetProtlength (TProtlength value)
 Assign a value to Protlength data member. More...
 
TProtlengthCMSPepHit_Base::SetProtlength (void)
 Assign a value to Protlength data member. More...
 
bool CMSPepHit_Base::IsSetOid (void) const
 blast library oid Check if a value has been assigned to Oid data member. More...
 
bool CMSPepHit_Base::CanGetOid (void) const
 Check if it is safe to call GetOid method. More...
 
void CMSPepHit_Base::ResetOid (void)
 Reset Oid data member. More...
 
TOid CMSPepHit_Base::GetOid (void) const
 Get the Oid member data. More...
 
void CMSPepHit_Base::SetOid (TOid value)
 Assign a value to Oid data member. More...
 
TOidCMSPepHit_Base::SetOid (void)
 Assign a value to Oid data member. More...
 
bool CMSPepHit_Base::IsSetReversed (void) const
 reversed sequence Check if a value has been assigned to Reversed data member. More...
 
bool CMSPepHit_Base::CanGetReversed (void) const
 Check if it is safe to call GetReversed method. More...
 
void CMSPepHit_Base::ResetReversed (void)
 Reset Reversed data member. More...
 
TReversed CMSPepHit_Base::GetReversed (void) const
 Get the Reversed member data. More...
 
void CMSPepHit_Base::SetReversed (TReversed value)
 Assign a value to Reversed data member. More...
 
TReversedCMSPepHit_Base::SetReversed (void)
 Assign a value to Reversed data member. More...
 
bool CMSPepHit_Base::IsSetPepstart (void) const
 AA before the peptide Check if a value has been assigned to Pepstart data member. More...
 
bool CMSPepHit_Base::CanGetPepstart (void) const
 Check if it is safe to call GetPepstart method. More...
 
void CMSPepHit_Base::ResetPepstart (void)
 Reset Pepstart data member. More...
 
const TPepstartCMSPepHit_Base::GetPepstart (void) const
 Get the Pepstart member data. More...
 
void CMSPepHit_Base::SetPepstart (const TPepstart &value)
 Assign a value to Pepstart data member. More...
 
void CMSPepHit_Base::SetPepstart (TPepstart &&value)
 
TPepstartCMSPepHit_Base::SetPepstart (void)
 Assign a value to Pepstart data member. More...
 
bool CMSPepHit_Base::IsSetPepstop (void) const
 AA after the peptide Check if a value has been assigned to Pepstop data member. More...
 
bool CMSPepHit_Base::CanGetPepstop (void) const
 Check if it is safe to call GetPepstop method. More...
 
void CMSPepHit_Base::ResetPepstop (void)
 Reset Pepstop data member. More...
 
const TPepstopCMSPepHit_Base::GetPepstop (void) const
 Get the Pepstop member data. More...
 
void CMSPepHit_Base::SetPepstop (const TPepstop &value)
 Assign a value to Pepstop data member. More...
 
void CMSPepHit_Base::SetPepstop (TPepstop &&value)
 
TPepstopCMSPepHit_Base::SetPepstop (void)
 Assign a value to Pepstop data member. More...
 
virtual void CMSPepHit_Base::Reset (void)
 Reset the whole object. More...
 
 CMSPepHit_Base::CMSPepHit_Base (const CMSPepHit_Base &)
 
CMSPepHit_BaseCMSPepHit_Base::operator= (const CMSPepHit_Base &)
 
 CMSRequest_Base::CMSRequest_Base (void)
 
virtual CMSRequest_Base::~CMSRequest_Base (void)
 
 CMSRequest_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CMSRequest_Base::IsSetSpectra (void) const
 the set of spectra Check if a value has been assigned to Spectra data member. More...
 
bool CMSRequest_Base::CanGetSpectra (void) const
 Check if it is safe to call GetSpectra method. More...
 
void CMSRequest_Base::ResetSpectra (void)
 Reset Spectra data member. More...
 
const TSpectraCMSRequest_Base::GetSpectra (void) const
 Get the Spectra member data. More...
 
void CMSRequest_Base::SetSpectra (TSpectra &value)
 Assign a value to Spectra data member. More...
 
TSpectraCMSRequest_Base::SetSpectra (void)
 Assign a value to Spectra data member. More...
 
bool CMSRequest_Base::IsSetSettings (void) const
 the search settings Check if a value has been assigned to Settings data member. More...
 
bool CMSRequest_Base::CanGetSettings (void) const
 Check if it is safe to call GetSettings method. More...
 
void CMSRequest_Base::ResetSettings (void)
 Reset Settings data member. More...
 
const TSettingsCMSRequest_Base::GetSettings (void) const
 Get the Settings member data. More...
 
void CMSRequest_Base::SetSettings (TSettings &value)
 Assign a value to Settings data member. More...
 
TSettingsCMSRequest_Base::SetSettings (void)
 Assign a value to Settings data member. More...
 
bool CMSRequest_Base::IsSetRid (void) const
 request id Check if a value has been assigned to Rid data member. More...
 
bool CMSRequest_Base::CanGetRid (void) const
 Check if it is safe to call GetRid method. More...
 
void CMSRequest_Base::ResetRid (void)
 Reset Rid data member. More...
 
const TRidCMSRequest_Base::GetRid (void) const
 Get the Rid member data. More...
 
void CMSRequest_Base::SetRid (const TRid &value)
 Assign a value to Rid data member. More...
 
void CMSRequest_Base::SetRid (TRid &&value)
 
TRidCMSRequest_Base::SetRid (void)
 Assign a value to Rid data member. More...
 
bool CMSRequest_Base::IsSetMoresettings (void) const
 additional search runs Check if a value has been assigned to Moresettings data member. More...
 
bool CMSRequest_Base::CanGetMoresettings (void) const
 Check if it is safe to call GetMoresettings method. More...
 
void CMSRequest_Base::ResetMoresettings (void)
 Reset Moresettings data member. More...
 
const TMoresettingsCMSRequest_Base::GetMoresettings (void) const
 Get the Moresettings member data. More...
 
void CMSRequest_Base::SetMoresettings (TMoresettings &value)
 Assign a value to Moresettings data member. More...
 
TMoresettingsCMSRequest_Base::SetMoresettings (void)
 Assign a value to Moresettings data member. More...
 
bool CMSRequest_Base::IsSetModset (void) const
 list of mods that can be used in search Check if a value has been assigned to Modset data member. More...
 
bool CMSRequest_Base::CanGetModset (void) const
 Check if it is safe to call GetModset method. More...
 
void CMSRequest_Base::ResetModset (void)
 Reset Modset data member. More...
 
const TModsetCMSRequest_Base::GetModset (void) const
 Get the Modset member data. More...
 
void CMSRequest_Base::SetModset (TModset &value)
 Assign a value to Modset data member. More...
 
TModsetCMSRequest_Base::SetModset (void)
 Assign a value to Modset data member. More...
 
virtual void CMSRequest_Base::Reset (void)
 Reset the whole object. More...
 
 CMSRequest_Base::CMSRequest_Base (const CMSRequest_Base &)
 
CMSRequest_BaseCMSRequest_Base::operator= (const CMSRequest_Base &)
 
 CMSResponse_Base::CMSResponse_Base (void)
 
virtual CMSResponse_Base::~CMSResponse_Base (void)
 
 CMSResponse_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CMSResponse_Base::IsSetHitsets (void) const
 hits grouped by spectrum Check if a value has been assigned to Hitsets data member. More...
 
bool CMSResponse_Base::CanGetHitsets (void) const
 Check if it is safe to call GetHitsets method. More...
 
void CMSResponse_Base::ResetHitsets (void)
 Reset Hitsets data member. More...
 
const THitsetsCMSResponse_Base::GetHitsets (void) const
 Get the Hitsets member data. More...
 
THitsetsCMSResponse_Base::SetHitsets (void)
 Assign a value to Hitsets data member. More...
 
bool CMSResponse_Base::IsSetScale (void) const
 scale to change m/z float to integer Check if a value has been assigned to Scale data member. More...
 
bool CMSResponse_Base::CanGetScale (void) const
 Check if it is safe to call GetScale method. More...
 
void CMSResponse_Base::ResetScale (void)
 Reset Scale data member. More...
 
void CMSResponse_Base::SetDefaultScale (void)
 Assign default value to Scale data member. More...
 
TScale CMSResponse_Base::GetScale (void) const
 Get the Scale member data. More...
 
void CMSResponse_Base::SetScale (TScale value)
 Assign a value to Scale data member. More...
 
TScaleCMSResponse_Base::SetScale (void)
 Assign a value to Scale data member. More...
 
bool CMSResponse_Base::IsSetRid (void) const
 request id Check if a value has been assigned to Rid data member. More...
 
bool CMSResponse_Base::CanGetRid (void) const
 Check if it is safe to call GetRid method. More...
 
void CMSResponse_Base::ResetRid (void)
 Reset Rid data member. More...
 
const TRidCMSResponse_Base::GetRid (void) const
 Get the Rid member data. More...
 
void CMSResponse_Base::SetRid (const TRid &value)
 Assign a value to Rid data member. More...
 
void CMSResponse_Base::SetRid (TRid &&value)
 
TRidCMSResponse_Base::SetRid (void)
 Assign a value to Rid data member. More...
 
bool CMSResponse_Base::IsSetError (void) const
 error response Check if a value has been assigned to Error data member. More...
 
bool CMSResponse_Base::CanGetError (void) const
 Check if it is safe to call GetError method. More...
 
void CMSResponse_Base::ResetError (void)
 Reset Error data member. More...
 
TError CMSResponse_Base::GetError (void) const
 Get the Error member data. More...
 
void CMSResponse_Base::SetError (TError value)
 Assign a value to Error data member. More...
 
TErrorCMSResponse_Base::SetError (void)
 Assign a value to Error data member. More...
 
bool CMSResponse_Base::IsSetVersion (void) const
 version of OMSSA Check if a value has been assigned to Version data member. More...
 
bool CMSResponse_Base::CanGetVersion (void) const
 Check if it is safe to call GetVersion method. More...
 
void CMSResponse_Base::ResetVersion (void)
 Reset Version data member. More...
 
const TVersionCMSResponse_Base::GetVersion (void) const
 Get the Version member data. More...
 
void CMSResponse_Base::SetVersion (const TVersion &value)
 Assign a value to Version data member. More...
 
void CMSResponse_Base::SetVersion (TVersion &&value)
 
TVersionCMSResponse_Base::SetVersion (void)
 Assign a value to Version data member. More...
 
bool CMSResponse_Base::IsSetEmail (void) const
 email address for notification Check if a value has been assigned to Email data member. More...
 
bool CMSResponse_Base::CanGetEmail (void) const
 Check if it is safe to call GetEmail method. More...
 
void CMSResponse_Base::ResetEmail (void)
 Reset Email data member. More...
 
const TEmailCMSResponse_Base::GetEmail (void) const
 Get the Email member data. More...
 
void CMSResponse_Base::SetEmail (const TEmail &value)
 Assign a value to Email data member. More...
 
void CMSResponse_Base::SetEmail (TEmail &&value)
 
TEmailCMSResponse_Base::SetEmail (void)
 Assign a value to Email data member. More...
 
bool CMSResponse_Base::IsSetDbversion (void) const
 version of db searched (usually size) Check if a value has been assigned to Dbversion data member. More...
 
bool CMSResponse_Base::CanGetDbversion (void) const
 Check if it is safe to call GetDbversion method. More...
 
void CMSResponse_Base::ResetDbversion (void)
 Reset Dbversion data member. More...
 
TDbversion CMSResponse_Base::GetDbversion (void) const
 Get the Dbversion member data. More...
 
void CMSResponse_Base::SetDbversion (TDbversion value)
 Assign a value to Dbversion data member. More...
 
TDbversionCMSResponse_Base::SetDbversion (void)
 Assign a value to Dbversion data member. More...
 
bool CMSResponse_Base::IsSetBioseqs (void) const
 sequences found in search Check if a value has been assigned to Bioseqs data member. More...
 
bool CMSResponse_Base::CanGetBioseqs (void) const
 Check if it is safe to call GetBioseqs method. More...
 
void CMSResponse_Base::ResetBioseqs (void)
 Reset Bioseqs data member. More...
 
const TBioseqsCMSResponse_Base::GetBioseqs (void) const
 Get the Bioseqs member data. More...
 
void CMSResponse_Base::SetBioseqs (TBioseqs &value)
 Assign a value to Bioseqs data member. More...
 
TBioseqsCMSResponse_Base::SetBioseqs (void)
 Assign a value to Bioseqs data member. More...
 
virtual void CMSResponse_Base::Reset (void)
 Reset the whole object. More...
 
 CMSResponse_Base::CMSResponse_Base (const CMSResponse_Base &)
 
CMSResponse_BaseCMSResponse_Base::operator= (const CMSResponse_Base &)
 
 CMSScoreSet::CMSScoreSet (void)
 
 CMSScoreSet::~CMSScoreSet (void)
 
 CMSScoreSet::CMSScoreSet (const CMSScoreSet &value)
 
CMSScoreSetCMSScoreSet::operator= (const CMSScoreSet &value)
 
 CMSScoreSet_Base::CMSScoreSet_Base (void)
 
virtual CMSScoreSet_Base::~CMSScoreSet_Base (void)
 
 CMSScoreSet_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CMSScoreSet_Base::IsSetName (void) const
 Check if a value has been assigned to Name data member. More...
 
bool CMSScoreSet_Base::CanGetName (void) const
 Check if it is safe to call GetName method. More...
 
void CMSScoreSet_Base::ResetName (void)
 Reset Name data member. More...
 
const TNameCMSScoreSet_Base::GetName (void) const
 Get the Name member data. More...
 
void CMSScoreSet_Base::SetName (const TName &value)
 Assign a value to Name data member. More...
 
void CMSScoreSet_Base::SetName (TName &&value)
 
TNameCMSScoreSet_Base::SetName (void)
 Assign a value to Name data member. More...
 
bool CMSScoreSet_Base::IsSetValue (void) const
 Check if a value has been assigned to Value data member. More...
 
bool CMSScoreSet_Base::CanGetValue (void) const
 Check if it is safe to call GetValue method. More...
 
void CMSScoreSet_Base::ResetValue (void)
 Reset Value data member. More...
 
TValue CMSScoreSet_Base::GetValue (void) const
 Get the Value member data. More...
 
void CMSScoreSet_Base::SetValue (TValue value)
 Assign a value to Value data member. More...
 
TValueCMSScoreSet_Base::SetValue (void)
 Assign a value to Value data member. More...
 
virtual void CMSScoreSet_Base::Reset (void)
 Reset the whole object. More...
 
 CMSScoreSet_Base::CMSScoreSet_Base (const CMSScoreSet_Base &)
 
CMSScoreSet_BaseCMSScoreSet_Base::operator= (const CMSScoreSet_Base &)
 
 CMSSearch_Base::CMSSearch_Base (void)
 
virtual CMSSearch_Base::~CMSSearch_Base (void)
 
 CMSSearch_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CMSSearch_Base::IsSetRequest (void) const
 Check if a value has been assigned to Request data member. More...
 
bool CMSSearch_Base::CanGetRequest (void) const
 Check if it is safe to call GetRequest method. More...
 
void CMSSearch_Base::ResetRequest (void)
 Reset Request data member. More...
 
const TRequestCMSSearch_Base::GetRequest (void) const
 Get the Request member data. More...
 
TRequestCMSSearch_Base::SetRequest (void)
 Assign a value to Request data member. More...
 
bool CMSSearch_Base::IsSetResponse (void) const
 Check if a value has been assigned to Response data member. More...
 
bool CMSSearch_Base::CanGetResponse (void) const
 Check if it is safe to call GetResponse method. More...
 
void CMSSearch_Base::ResetResponse (void)
 Reset Response data member. More...
 
const TResponseCMSSearch_Base::GetResponse (void) const
 Get the Response member data. More...
 
TResponseCMSSearch_Base::SetResponse (void)
 Assign a value to Response data member. More...
 
virtual void CMSSearch_Base::Reset (void)
 Reset the whole object. More...
 
 CMSSearch_Base::CMSSearch_Base (const CMSSearch_Base &)
 
CMSSearch_BaseCMSSearch_Base::operator= (const CMSSearch_Base &)
 
 CMSSearchSettings_Base::CMSSearchSettings_Base (void)
 
virtual CMSSearchSettings_Base::~CMSSearchSettings_Base (void)
 
 CMSSearchSettings_Base::DECLARE_INTERNAL_TYPE_INFO ()
 
bool CMSSearchSettings_Base::IsSetPrecursorsearchtype (void) const
 average or monoisotopic? Check if a value has been assigned to Precursorsearchtype data member. More...
 
bool CMSSearchSettings_Base::CanGetPrecursorsearchtype (void) const
 Check if it is safe to call GetPrecursorsearchtype method. More...
 
void CMSSearchSettings_Base::ResetPrecursorsearchtype (void)
 Reset Precursorsearchtype data member. More...
 
TPrecursorsearchtype CMSSearchSettings_Base::GetPrecursorsearchtype (void) const
 Get the Precursorsearchtype member data. More...
 
void CMSSearchSettings_Base::SetPrecursorsearchtype (TPrecursorsearchtype value)
 Assign a value to Precursorsearchtype data member. More...
 
TPrecursorsearchtypeCMSSearchSettings_Base::SetPrecursorsearchtype (void)
 Assign a value to Precursorsearchtype data member. More...
 
bool CMSSearchSettings_Base::IsSetProductsearchtype (void) const
 average or monoisotopic? Check if a value has been assigned to Productsearchtype data member. More...
 
bool CMSSearchSettings_Base::CanGetProductsearchtype (void) const
 Check if it is safe to call GetProductsearchtype method. More...
 
void CMSSearchSettings_Base::ResetProductsearchtype (void)
 Reset Productsearchtype data member. More...
 
TProductsearchtype CMSSearchSettings_Base::GetProductsearchtype (void) const
 Get the Productsearchtype member data. More...
 
void CMSSearchSettings_Base::SetProductsearchtype (TProductsearchtype value)
 Assign a value to Productsearchtype data member. More...
 
TProductsearchtypeCMSSearchSettings_Base::SetProductsearchtype (void)
 Assign a value to Productsearchtype data member. More...
 
bool CMSSearchSettings_Base::IsSetIonstosearch (void) const
 which ions to search? Check if a value has been assigned to Ionstosearch data member. More...
 
bool CMSSearchSettings_Base::CanGetIonstosearch (void) const
 Check if it is safe to call GetIonstosearch method. More...
 
void CMSSearchSettings_Base::ResetIonstosearch (void)
 Reset Ionstosearch data member. More...
 
const TIonstosearchCMSSearchSettings_Base::GetIonstosearch (void) const
 Get the Ionstosearch member data. More...
 
TIonstosearchCMSSearchSettings_Base::SetIonstosearch (void)
 Assign a value to Ionstosearch data member. More...
 
bool CMSSearchSettings_Base::IsSetPeptol (void) const
 peptide mass tolerance Check if a value has been assigned to Peptol data member. More...
 
bool CMSSearchSettings_Base::CanGetPeptol (void) const
 Check if it is safe to call GetPeptol method. More...
 
void CMSSearchSettings_Base::ResetPeptol (void)
 Reset Peptol data member. More...
 
TPeptol CMSSearchSettings_Base::GetPeptol (void) const
 Get the Peptol member data. More...
 
void CMSSearchSettings_Base::SetPeptol (TPeptol value)
 Assign a value to Peptol data member. More...
 
TPeptolCMSSearchSettings_Base::SetPeptol (void)
 Assign a value to Peptol data member. More...
 
bool CMSSearchSettings_Base::IsSetMsmstol (void) const
 msms mass tolerance Check if a value has been assigned to Msmstol data member. More...
 
bool CMSSearchSettings_Base::CanGetMsmstol (void) const
 Check if it is safe to call GetMsmstol method. More...
 
void CMSSearchSettings_Base::ResetMsmstol (void)
 Reset Msmstol data member. More...
 
TMsmstol CMSSearchSettings_Base::GetMsmstol (void) const
 Get the Msmstol member data. More...
 
void CMSSearchSettings_Base::SetMsmstol (TMsmstol value)
 Assign a value to Msmstol data member. More...
 
TMsmstolCMSSearchSettings_Base::SetMsmstol (void)
 Assign a value to Msmstol data member. More...
 
bool CMSSearchSettings_Base::IsSetZdep (void) const
 what is the charge dependence of the mass tolerance? Check if a value has been assigned to Zdep data member. More...
 
bool CMSSearchSettings_Base::CanGetZdep (void) const
 Check if it is safe to call GetZdep method. More...
 
void CMSSearchSettings_Base::ResetZdep (void)
 Reset Zdep data member. More...
 
TZdep CMSSearchSettings_Base::GetZdep (void) const
 Get the Zdep member data. More...
 
void CMSSearchSettings_Base::SetZdep (TZdep value)
 Assign a value to Zdep data member. More...
 
TZdepCMSSearchSettings_Base::SetZdep (void)
 Assign a value to Zdep data member. More...
 
bool CMSSearchSettings_Base::IsSetCutoff (void) const
 evalue cutoff next 3 fields define intensity fraction below which peaks will be discard Check if a value has been assigned to Cutoff data member. More...
 
bool CMSSearchSettings_Base::CanGetCutoff (void) const
 Check if it is safe to call GetCutoff method. More...
 
void CMSSearchSettings_Base::ResetCutoff (void)
 Reset Cutoff data member. More...
 
TCutoff CMSSearchSettings_Base::GetCutoff (void) const
 Get the Cutoff member data. More...
 
void CMSSearchSettings_Base::SetCutoff (TCutoff value)
 Assign a value to Cutoff data member. More...
 
TCutoffCMSSearchSettings_Base::SetCutoff (void)
 Assign a value to Cutoff data member. More...
 
bool CMSSearchSettings_Base::IsSetCutlo (void) const
 the start of the cutoff, fraction of most intense peak Check if a value has been assigned to Cutlo data member. More...
 
bool CMSSearchSettings_Base::CanGetCutlo (void) const
 Check if it is safe to call GetCutlo method. More...
 
void CMSSearchSettings_Base::ResetCutlo (void)
 Reset Cutlo data member. More...
 
TCutlo CMSSearchSettings_Base::GetCutlo (void) const
 Get the Cutlo member data. More...
 
void CMSSearchSettings_Base::SetCutlo (TCutlo value)
 Assign a value to Cutlo data member. More...
 
TCutloCMSSearchSettings_Base::SetCutlo (void)
 Assign a value to Cutlo data member. More...
 
bool CMSSearchSettings_Base::IsSetCuthi (void) const
 the end of the cutoff Check if a value has been assigned to Cuthi data member. More...
 
bool CMSSearchSettings_Base::CanGetCuthi (void) const
 Check if it is safe to call GetCuthi method. More...
 
void CMSSearchSettings_Base::ResetCuthi (void)
 Reset Cuthi data member. More...
 
TCuthi CMSSearchSettings_Base::GetCuthi (void) const
 Get the Cuthi member data. More...
 
void CMSSearchSettings_Base::SetCuthi (TCuthi value)
 Assign a value to Cuthi data member. More...
 
TCuthiCMSSearchSettings_Base::SetCuthi (void)
 Assign a value to Cuthi data member. More...
 
bool CMSSearchSettings_Base::IsSetCutinc (void) const
 the increment of the cutoff Check if a value has been assigned to Cutinc data member. More...
 
bool CMSSearchSettings_Base::CanGetCutinc (void) const
 Check if it is safe to call GetCutinc method. More...
 
void CMSSearchSettings_Base::ResetCutinc (void)
 Reset Cutinc data member. More...
 
TCutinc CMSSearchSettings_Base::GetCutinc (void) const
 Get the Cutinc member data. More...
 
void CMSSearchSettings_Base::SetCutinc (TCutinc value)
 Assign a value to Cutinc data member. More...
 
TCutincCMSSearchSettings_Base::SetCutinc (void)
 Assign a value to Cutinc data member. More...
 
bool CMSSearchSettings_Base::IsSetSinglewin (void) const
 the size of the single charge filtering window Check if a value has been assigned to Singlewin data member. More...
 
bool CMSSearchSettings_Base::CanGetSinglewin (void) const
 Check if it is safe to call GetSinglewin method. More...
 
void CMSSearchSettings_Base::ResetSinglewin (void)
 Reset Singlewin data member. More...
 
TSinglewin CMSSearchSettings_Base::GetSinglewin (void) const
 Get the Singlewin member data. More...
 
void CMSSearchSettings_Base::SetSinglewin (TSinglewin value)
 Assign a value to Singlewin data member. More...
 
TSinglewinCMSSearchSettings_Base::SetSinglewin (void)
 Assign a value to Singlewin data member. More...
 
bool CMSSearchSettings_Base::IsSetDoublewin (void) const
 the size of the double charge filtering window Check if a value has been assigned to Doublewin data member. More...
 
bool CMSSearchSettings_Base::CanGetDoublewin (void) const
 Check if it is safe to call GetDoublewin method. More...
 
void CMSSearchSettings_Base::ResetDoublewin (void)
 Reset Doublewin data member. More...
 
TDoublewin CMSSearchSettings_Base::GetDoublewin (void) const
 Get the Doublewin member data. More...
 
void CMSSearchSettings_Base::SetDoublewin (TDoublewin value)
 Assign a value to Doublewin data member. More...
 
TDoublewinCMSSearchSettings_Base::SetDoublewin (void)
 Assign a value to Doublewin data member. More...
 
bool CMSSearchSettings_Base::IsSetSinglenum (void) const
 the number of peaks allowed in the single window Check if a value has been assigned to Singlenum data member. More...
 
bool CMSSearchSettings_Base::CanGetSinglenum (void) const
 Check if it is safe to call GetSinglenum method. More...
 
void CMSSearchSettings_Base::ResetSinglenum (void)
 Reset Singlenum data member. More...
 
TSinglenum CMSSearchSettings_Base::GetSinglenum (void) const
 Get the Singlenum member data. More...
 
void CMSSearchSettings_Base::SetSinglenum (TSinglenum value)
 Assign a value to Singlenum data member. More...
 
TSinglenumCMSSearchSettings_Base::SetSinglenum (void)
 Assign a value to Singlenum data member. More...
 
bool CMSSearchSettings_Base::IsSetDoublenum (void) const
 the number of peaks allowed in the double window Check if a value has been assigned to Doublenum data member. More...
 
bool CMSSearchSettings_Base::CanGetDoublenum (void) const
 Check if it is safe to call GetDoublenum method. More...
 
void CMSSearchSettings_Base::ResetDoublenum (void)
 Reset Doublenum data member. More...
 
TDoublenum CMSSearchSettings_Base::GetDoublenum (void) const
 Get the Doublenum member data. More...
 
void CMSSearchSettings_Base::SetDoublenum (TDoublenum value)
 Assign a value to Doublenum data member. More...
 
TDoublenumCMSSearchSettings_Base::SetDoublenum (void)
 Assign a value to Doublenum data member. More...
 
bool CMSSearchSettings_Base::IsSetFixed (void) const
 fixed PTM's Check if a value has been assigned to Fixed data member. More...
 
bool CMSSearchSettings_Base::CanGetFixed (void) const
 Check if it is safe to call GetFixed method. More...
 
void CMSSearchSettings_Base::ResetFixed (void)
 Reset Fixed data member. More...
 
const TFixedCMSSearchSettings_Base::GetFixed (void) const
 Get the Fixed member data. More...
 
TFixedCMSSearchSettings_Base::SetFixed (void)
 Assign a value to Fixed data member. More...
 
bool CMSSearchSettings_Base::IsSetVariable (void) const
 variable PTM's Check if a value has been assigned to Variable data member. More...
 
bool CMSSearchSettings_Base::CanGetVariable (void) const
 Check if it is safe to call GetVariable method. More...
 
void CMSSearchSettings_Base::ResetVariable (void)
 Reset Variable data member. More...
 
const TVariableCMSSearchSettings_Base::GetVariable (void) const
 Get the Variable member data. More...
 
TVariableCMSSearchSettings_Base::SetVariable (void)
 Assign a value to Variable data member. More...
 
bool CMSSearchSettings_Base::IsSetEnzyme (void) const
 digestion enzyme Check if a value has been assigned to Enzyme data member. More...
 
bool CMSSearchSettings_Base::CanGetEnzyme (void) const
 Check if it is safe to call GetEnzyme method. More...
 
void CMSSearchSettings_Base::ResetEnzyme (void)
 Reset Enzyme data member. More...
 
TEnzyme CMSSearchSettings_Base::GetEnzyme (void) const
 Get the Enzyme member data. More...
 
void CMSSearchSettings_Base::SetEnzyme (TEnzyme value)
 Assign a value to Enzyme data member. More...
 
TEnzymeCMSSearchSettings_Base::SetEnzyme (void)
 Assign a value to Enzyme data member. More...
 
bool CMSSearchSettings_Base::IsSetMissedcleave (void) const
 number of missed cleaves allowed Check if a value has been assigned to Missedcleave data member. More...
 
bool CMSSearchSettings_Base::CanGetMissedcleave (void) const
 Check if it is safe to call GetMissedcleave method. More...
 
void CMSSearchSettings_Base::ResetMissedcleave (void)
 Reset Missedcleave data member. More...
 
TMissedcleave CMSSearchSettings_Base::GetMissedcleave (void) const
 Get the Missedcleave member data. More...
 
void CMSSearchSettings_Base::SetMissedcleave (TMissedcleave value)
 Assign a value to Missedcleave data member. More...
 
TMissedcleaveCMSSearchSettings_Base::SetMissedcleave (void)
 Assign a value to Missedcleave data member. More...
 
bool CMSSearchSettings_Base::IsSetHitlistlen (void) const
 the number of hits kept in memory for a spectrum Check if a value has been assigned to Hitlistlen data member. More...
 
bool CMSSearchSettings_Base::CanGetHitlistlen (void) const
 Check if it is safe to call GetHitlistlen method. More...
 
void CMSSearchSettings_Base::ResetHitlistlen (void)
 Reset Hitlistlen data member. More...
 
void CMSSearchSettings_Base::SetDefaultHitlistlen (void)
 Assign default value to Hitlistlen data member. More...
 
THitlistlen CMSSearchSettings_Base::GetHitlistlen (void) const
 Get the Hitlistlen member data. More...
 
void CMSSearchSettings_Base::SetHitlistlen (THitlistlen value)
 Assign a value to Hitlistlen data member. More...
 
THitlistlenCMSSearchSettings_Base::SetHitlistlen (void)
 Assign a value to Hitlistlen data member. More...
 
bool CMSSearchSettings_Base::IsSetDb (void) const
 sequence set to search, e.g. More...
 
bool CMSSearchSettings_Base::CanGetDb (void) const
 Check if it is safe to call GetDb method. More...
 
void CMSSearchSettings_Base::ResetDb (void)
 Reset Db data member. More...
 
const TDbCMSSearchSettings_Base::GetDb (void) const
 Get the Db member data. More...
 
void CMSSearchSettings_Base::SetDb (const TDb &value)
 Assign a value to Db data member. More...
 
void CMSSearchSettings_Base::SetDb (TDb &&value)
 
TDbCMSSearchSettings_Base::SetDb (void)
 Assign a value to Db data member. More...
 
bool CMSSearchSettings_Base::IsSetTophitnum (void) const
 number of m/z to consider in first pass Check if a value has been assigned to Tophitnum data member. More...
 
bool CMSSearchSettings_Base::CanGetTophitnum (void) const
 Check if it is safe to call GetTophitnum method. More...
 
void CMSSearchSettings_Base::ResetTophitnum (void)
 Reset Tophitnum data member. More...
 
TTophitnum CMSSearchSettings_Base::GetTophitnum (void) const
 Get the Tophitnum member data. More...
 
void CMSSearchSettings_Base::SetTophitnum (TTophitnum value)
 Assign a value to Tophitnum data member. More...
 
TTophitnumCMSSearchSettings_Base::SetTophitnum (void)
 Assign a value to Tophitnum data member. More...
 
bool CMSSearchSettings_Base::IsSetMinhit (void) const
 minimum number of m/z values for a valid hit Check if a value has been assigned to Minhit data member. More...
 
bool CMSSearchSettings_Base::CanGetMinhit (void) const
 Check if it is safe to call GetMinhit method. More...
 
void CMSSearchSettings_Base::ResetMinhit (void)
 Reset Minhit data member. More...
 
void CMSSearchSettings_Base::SetDefaultMinhit (void)
 Assign default value to Minhit data member. More...
 
TMinhit CMSSearchSettings_Base::GetMinhit (void) const
 Get the Minhit member data. More...
 
void CMSSearchSettings_Base::SetMinhit (TMinhit value)
 Assign a value to Minhit data member. More...
 
TMinhitCMSSearchSettings_Base::SetMinhit (void)
 Assign a value to Minhit data member. More...
 
bool CMSSearchSettings_Base::IsSetMinspectra (void) const
 minimum number of m/z for a valid spectra Check if a value has been assigned to Minspectra data member. More...
 
bool CMSSearchSettings_Base::CanGetMinspectra (void) const
 Check if it is safe to call GetMinspectra method. More...
 
void CMSSearchSettings_Base::ResetMinspectra (void)
 Reset Minspectra data member. More...
 
void CMSSearchSettings_Base::SetDefaultMinspectra (void)
 Assign default value to Minspectra data member. More...
 
TMinspectra CMSSearchSettings_Base::GetMinspectra (void) const
 Get the Minspectra member data. More...
 
void CMSSearchSettings_Base::SetMinspectra (TMinspectra value)
 Assign a value to Minspectra data member. More...
 
TMinspectraCMSSearchSettings_Base::SetMinspectra (void)
 Assign a value to Minspectra data member. More...
 
bool CMSSearchSettings_Base::IsSetScale (void) const
 scale for m/z float to integer Check if a value has been assigned to Scale data member. More...
 
bool CMSSearchSettings_Base::CanGetScale (void) const
 Check if it is safe to call GetScale method. More...
 
void CMSSearchSettings_Base::ResetScale (void)
 Reset Scale data member. More...
 
void CMSSearchSettings_Base::SetDefaultScale (void)
 Assign default value to Scale data member. More...
 
TScale CMSSearchSettings_Base::GetScale (void) const
 Get the Scale member data. More...
 
void CMSSearchSettings_Base::SetScale (TScale value)
 Assign a value to Scale data member. More...
 
TScaleCMSSearchSettings_Base::SetScale (void)
 Assign a value to Scale data member. More...
 
bool CMSSearchSettings_Base::IsSetMaxmods (void) const
 maximum number of mass ladders per database peptide Check if a value has been assigned to Maxmods data member. More...
 
bool CMSSearchSettings_Base::CanGetMaxmods (void) const
 Check if it is safe to call GetMaxmods method. More...
 
void CMSSearchSettings_Base::ResetMaxmods (void)
 Reset Maxmods data member. More...
 
void CMSSearchSettings_Base::SetDefaultMaxmods (void)
 Assign default value to Maxmods data member. More...
 
TMaxmods CMSSearchSettings_Base::GetMaxmods (void) const
 Get the Maxmods member data. More...
 
void CMSSearchSettings_Base::SetMaxmods (TMaxmods value)
 Assign a value to Maxmods data member. More...
 
TMaxmodsCMSSearchSettings_Base::SetMaxmods (void)
 Assign a value to Maxmods data member. More...
 
bool CMSSearchSettings_Base::IsSetTaxids (void) const
 taxa to limit search Check if a value has been assigned to Taxids data member. More...
 
bool CMSSearchSettings_Base::CanGetTaxids (void) const
 Check if it is safe to call GetTaxids method. More...
 
void CMSSearchSettings_Base::ResetTaxids (void)
 Reset Taxids data member. More...
 
const TTaxidsCMSSearchSettings_Base::GetTaxids (void) const
 Get the Taxids member data. More...
 
TTaxidsCMSSearchSettings_Base::SetTaxids (void)
 Assign a value to Taxids data member. More...
 
bool CMSSearchSettings_Base::IsSetChargehandling (void) const
 how to deal with charges Check if a value has been assigned to Chargehandling data member. More...
 
bool CMSSearchSettings_Base::CanGetChargehandling (void) const
 Check if it is safe to call GetChargehandling method. More...
 
void CMSSearchSettings_Base::ResetChargehandling (void)
 Reset Chargehandling data member. More...
 
const TChargehandlingCMSSearchSettings_Base::GetChargehandling (void) const
 Get the Chargehandling member data. More...
 
void CMSSearchSettings_Base::SetChargehandling (TChargehandling &value)
 Assign a value to Chargehandling data member. More...
 
TChargehandlingCMSSearchSettings_Base::SetChargehandling (void)
 Assign a value to Chargehandling data member. More...
 
bool CMSSearchSettings_Base::IsSetUsermods (void) const
 user defined modifications Check if a value has been assigned to Usermods data member. More...
 
bool CMSSearchSettings_Base::CanGetUsermods (void) const
 Check if it is safe to call GetUsermods method. More...
 
void CMSSearchSettings_Base::ResetUsermods (void)
 Reset Usermods data member. More...
 
const TUsermodsCMSSearchSettings_Base::GetUsermods (void) const
 Get the Usermods member data. More...
 
void CMSSearchSettings_Base::SetUsermods (TUsermods &value)
 Assign a value to Usermods data member. More...
 
TUsermodsCMSSearchSettings_Base::SetUsermods (void)
 Assign a value to Usermods data member. More...
 
bool CMSSearchSettings_Base::IsSetPseudocount (void) const
 min number of counts per precursor bin Check if a value has been assigned to Pseudocount data member. More...
 
bool CMSSearchSettings_Base::CanGetPseudocount (void) const
 Check if it is safe to call GetPseudocount method. More...
 
void CMSSearchSettings_Base::ResetPseudocount (void)
 Reset Pseudocount data member. More...
 
void CMSSearchSettings_Base::SetDefaultPseudocount (void)
 Assign default value to Pseudocount data member. More...
 
TPseudocount CMSSearchSettings_Base::GetPseudocount (void) const
 Get the Pseudocount member data. More...
 
void CMSSearchSettings_Base::SetPseudocount (TPseudocount value)
 Assign a value to Pseudocount data member. More...
 
TPseudocountCMSSearchSettings_Base::SetPseudocount (void)
 Assign a value to Pseudocount data member. More...
 
bool CMSSearchSettings_Base::IsSetSearchb1 (void) const
 should b1 product be in search (1=no, 0=yes) Check if a value has been assigned to Searchb1 data member. More...
 
bool CMSSearchSettings_Base::CanGetSearchb1 (void) const
 Check if it is safe to call GetSearchb1 method. More...
 
void CMSSearchSettings_Base::ResetSearchb1 (void)
 Reset Searchb1 data member. More...
 
void CMSSearchSettings_Base::SetDefaultSearchb1 (void)
 Assign default value to Searchb1 data member. More...
 
TSearchb1 CMSSearchSettings_Base::GetSearchb1 (void) const
 Get the Searchb1 member data. More...
 
void CMSSearchSettings_Base::SetSearchb1 (TSearchb1 value)
 Assign a value to Searchb1 data member. More...
 
TSearchb1CMSSearchSettings_Base::SetSearchb1 (void)
 Assign a value to Searchb1 data member. More...
 
bool CMSSearchSettings_Base::IsSetSearchctermproduct (void) const
 should c terminus ion be searched (1=no, 0=yes) Check if a value has been assigned to Searchctermproduct data member. More...
 
bool CMSSearchSettings_Base::CanGetSearchctermproduct (void) const
 Check if it is safe to call GetSearchctermproduct method. More...
 
void CMSSearchSettings_Base::ResetSearchctermproduct (void)
 Reset Searchctermproduct data member. More...
 
void CMSSearchSettings_Base::SetDefaultSearchctermproduct (void)
 Assign default value to Searchctermproduct data member. More...
 
TSearchctermproduct CMSSearchSettings_Base::GetSearchctermproduct (void) const
 Get the Searchctermproduct member data. More...
 
void CMSSearchSettings_Base::SetSearchctermproduct (TSearchctermproduct value)
 Assign a value to Searchctermproduct data member. More...
 
TSearchctermproductCMSSearchSettings_Base::SetSearchctermproduct (void)
 Assign a value to Searchctermproduct data member. More...
 
bool CMSSearchSettings_Base::IsSetMaxproductions (void) const
 max number of ions in each series (0=all) Check if a value has been assigned to Maxproductions data member. More...
 
bool CMSSearchSettings_Base::CanGetMaxproductions (void) const
 Check if it is safe to call GetMaxproductions method. More...
 
void CMSSearchSettings_Base::ResetMaxproductions (void)
 Reset Maxproductions data member. More...
 
void CMSSearchSettings_Base::SetDefaultMaxproductions (void)
 Assign default value to Maxproductions data member. More...
 
TMaxproductions CMSSearchSettings_Base::GetMaxproductions (void) const
 Get the Maxproductions member data. More...
 
void CMSSearchSettings_Base::SetMaxproductions (TMaxproductions value)
 Assign a value to Maxproductions data member. More...
 
TMaxproductionsCMSSearchSettings_Base::SetMaxproductions (void)
 Assign a value to Maxproductions data member. More...
 
bool CMSSearchSettings_Base::IsSetMinnoenzyme (void) const
 min number of AA in peptide for noenzyme search Check if a value has been assigned to Minnoenzyme data member. More...
 
bool CMSSearchSettings_Base::CanGetMinnoenzyme (void) const
 Check if it is safe to call GetMinnoenzyme method. More...
 
void CMSSearchSettings_Base::ResetMinnoenzyme (void)
 Reset Minnoenzyme data member. More...
 
void CMSSearchSettings_Base::SetDefaultMinnoenzyme (void)
 Assign default value to Minnoenzyme data member. More...
 
TMinnoenzyme CMSSearchSettings_Base::GetMinnoenzyme (void) const
 Get the Minnoenzyme member data. More...
 
void CMSSearchSettings_Base::SetMinnoenzyme (TMinnoenzyme value)
 Assign a value to Minnoenzyme data member. More...
 
TMinnoenzymeCMSSearchSettings_Base::SetMinnoenzyme (void)
 Assign a value to Minnoenzyme data member. More...
 
bool CMSSearchSettings_Base::IsSetMaxnoenzyme (void) const
 max number of AA in peptide for noenzyme search (0=none) Check if a value has been assigned to Maxnoenzyme data member. More...
 
bool CMSSearchSettings_Base::CanGetMaxnoenzyme (void) const
 Check if it is safe to call GetMaxnoenzyme method. More...
 
void CMSSearchSettings_Base::ResetMaxnoe