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| CMSBioseq::CMSBioseq (void) |
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| CMSBioseq::~CMSBioseq (void) |
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| CMSBioseq::CMSBioseq (const CMSBioseq &value) |
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CMSBioseq & | CMSBioseq::operator= (const CMSBioseq &value) |
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| CMSBioseq_Base::CMSBioseq_Base (void) |
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virtual | CMSBioseq_Base::~CMSBioseq_Base (void) |
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| CMSBioseq_Base::DECLARE_INTERNAL_TYPE_INFO () |
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bool | CMSBioseq_Base::IsSetOid (void) const |
| blast library oid Check if a value has been assigned to Oid data member. More...
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bool | CMSBioseq_Base::CanGetOid (void) const |
| Check if it is safe to call GetOid method. More...
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void | CMSBioseq_Base::ResetOid (void) |
| Reset Oid data member. More...
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TOid | CMSBioseq_Base::GetOid (void) const |
| Get the Oid member data. More...
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void | CMSBioseq_Base::SetOid (TOid value) |
| Assign a value to Oid data member. More...
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TOid & | CMSBioseq_Base::SetOid (void) |
| Assign a value to Oid data member. More...
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bool | CMSBioseq_Base::IsSetSeq (void) const |
| Check if a value has been assigned to Seq data member. More...
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bool | CMSBioseq_Base::CanGetSeq (void) const |
| Check if it is safe to call GetSeq method. More...
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void | CMSBioseq_Base::ResetSeq (void) |
| Reset Seq data member. More...
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const TSeq & | CMSBioseq_Base::GetSeq (void) const |
| Get the Seq member data. More...
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void | CMSBioseq_Base::SetSeq (TSeq &value) |
| Assign a value to Seq data member. More...
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TSeq & | CMSBioseq_Base::SetSeq (void) |
| Assign a value to Seq data member. More...
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virtual void | CMSBioseq_Base::Reset (void) |
| Reset the whole object. More...
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| CMSBioseq_Base::CMSBioseq_Base (const CMSBioseq_Base &) |
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CMSBioseq_Base & | CMSBioseq_Base::operator= (const CMSBioseq_Base &) |
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| CMSBioseqSet_Base::CMSBioseqSet_Base (void) |
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virtual | CMSBioseqSet_Base::~CMSBioseqSet_Base (void) |
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| CMSBioseqSet_Base::DECLARE_INTERNAL_TYPE_INFO () |
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bool | CMSBioseqSet_Base::IsSet (void) const |
| Check if a value has been assigned to data member. More...
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bool | CMSBioseqSet_Base::CanGet (void) const |
| Check if it is safe to call Get method. More...
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void | CMSBioseqSet_Base::Reset (void) |
| Reset data member. More...
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const Tdata & | CMSBioseqSet_Base::Get (void) const |
| Get the member data. More...
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Tdata & | CMSBioseqSet_Base::Set (void) |
| Assign a value to data member. More...
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| CMSBioseqSet_Base::operator const Tdata & (void) const |
| Conversion operator to 'const Tdata' type. More...
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| CMSBioseqSet_Base::operator Tdata & (void) |
| Conversion operator to 'Tdata' type. More...
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| CMSBioseqSet_Base::CMSBioseqSet_Base (const CMSBioseqSet_Base &) |
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CMSBioseqSet_Base & | CMSBioseqSet_Base::operator= (const CMSBioseqSet_Base &) |
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| CMSChargeHandle::CMSChargeHandle (void) |
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| CMSChargeHandle::~CMSChargeHandle (void) |
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| CMSChargeHandle::CMSChargeHandle (const CMSChargeHandle &value) |
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CMSChargeHandle & | CMSChargeHandle::operator= (const CMSChargeHandle &value) |
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| CMSChargeHandle_Base::CMSChargeHandle_Base (void) |
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virtual | CMSChargeHandle_Base::~CMSChargeHandle_Base (void) |
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| CMSChargeHandle_Base::DECLARE_INTERNAL_TYPE_INFO () |
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bool | CMSChargeHandle_Base::IsSetCalcplusone (void) const |
| do we guess charge one? Check if a value has been assigned to Calcplusone data member. More...
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bool | CMSChargeHandle_Base::CanGetCalcplusone (void) const |
| Check if it is safe to call GetCalcplusone method. More...
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void | CMSChargeHandle_Base::ResetCalcplusone (void) |
| Reset Calcplusone data member. More...
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void | CMSChargeHandle_Base::SetDefaultCalcplusone (void) |
| Assign default value to Calcplusone data member. More...
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TCalcplusone | CMSChargeHandle_Base::GetCalcplusone (void) const |
| Get the Calcplusone member data. More...
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void | CMSChargeHandle_Base::SetCalcplusone (TCalcplusone value) |
| Assign a value to Calcplusone data member. More...
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TCalcplusone & | CMSChargeHandle_Base::SetCalcplusone (void) |
| Assign a value to Calcplusone data member. More...
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bool | CMSChargeHandle_Base::IsSetCalccharge (void) const |
| how do we handle charges? Check if a value has been assigned to Calccharge data member. More...
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bool | CMSChargeHandle_Base::CanGetCalccharge (void) const |
| Check if it is safe to call GetCalccharge method. More...
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void | CMSChargeHandle_Base::ResetCalccharge (void) |
| Reset Calccharge data member. More...
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void | CMSChargeHandle_Base::SetDefaultCalccharge (void) |
| Assign default value to Calccharge data member. More...
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TCalccharge | CMSChargeHandle_Base::GetCalccharge (void) const |
| Get the Calccharge member data. More...
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void | CMSChargeHandle_Base::SetCalccharge (TCalccharge value) |
| Assign a value to Calccharge data member. More...
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TCalccharge & | CMSChargeHandle_Base::SetCalccharge (void) |
| Assign a value to Calccharge data member. More...
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bool | CMSChargeHandle_Base::IsSetMincharge (void) const |
| if userange, what is the min? Check if a value has been assigned to Mincharge data member. More...
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bool | CMSChargeHandle_Base::CanGetMincharge (void) const |
| Check if it is safe to call GetMincharge method. More...
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void | CMSChargeHandle_Base::ResetMincharge (void) |
| Reset Mincharge data member. More...
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void | CMSChargeHandle_Base::SetDefaultMincharge (void) |
| Assign default value to Mincharge data member. More...
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TMincharge | CMSChargeHandle_Base::GetMincharge (void) const |
| Get the Mincharge member data. More...
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void | CMSChargeHandle_Base::SetMincharge (TMincharge value) |
| Assign a value to Mincharge data member. More...
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TMincharge & | CMSChargeHandle_Base::SetMincharge (void) |
| Assign a value to Mincharge data member. More...
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bool | CMSChargeHandle_Base::IsSetMaxcharge (void) const |
| if userange, what is the max? Check if a value has been assigned to Maxcharge data member. More...
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bool | CMSChargeHandle_Base::CanGetMaxcharge (void) const |
| Check if it is safe to call GetMaxcharge method. More...
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void | CMSChargeHandle_Base::ResetMaxcharge (void) |
| Reset Maxcharge data member. More...
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void | CMSChargeHandle_Base::SetDefaultMaxcharge (void) |
| Assign default value to Maxcharge data member. More...
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TMaxcharge | CMSChargeHandle_Base::GetMaxcharge (void) const |
| Get the Maxcharge member data. More...
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void | CMSChargeHandle_Base::SetMaxcharge (TMaxcharge value) |
| Assign a value to Maxcharge data member. More...
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TMaxcharge & | CMSChargeHandle_Base::SetMaxcharge (void) |
| Assign a value to Maxcharge data member. More...
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bool | CMSChargeHandle_Base::IsSetConsidermult (void) const |
| at which precursor charge to consider +2 ions? Check if a value has been assigned to Considermult data member. More...
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bool | CMSChargeHandle_Base::CanGetConsidermult (void) const |
| Check if it is safe to call GetConsidermult method. More...
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void | CMSChargeHandle_Base::ResetConsidermult (void) |
| Reset Considermult data member. More...
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void | CMSChargeHandle_Base::SetDefaultConsidermult (void) |
| Assign default value to Considermult data member. More...
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TConsidermult | CMSChargeHandle_Base::GetConsidermult (void) const |
| Get the Considermult member data. More...
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void | CMSChargeHandle_Base::SetConsidermult (TConsidermult value) |
| Assign a value to Considermult data member. More...
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TConsidermult & | CMSChargeHandle_Base::SetConsidermult (void) |
| Assign a value to Considermult data member. More...
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bool | CMSChargeHandle_Base::IsSetPlusone (void) const |
| what % of peaks below precursor needed to call as +1 Check if a value has been assigned to Plusone data member. More...
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bool | CMSChargeHandle_Base::CanGetPlusone (void) const |
| Check if it is safe to call GetPlusone method. More...
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void | CMSChargeHandle_Base::ResetPlusone (void) |
| Reset Plusone data member. More...
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TPlusone | CMSChargeHandle_Base::GetPlusone (void) const |
| Get the Plusone member data. More...
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void | CMSChargeHandle_Base::SetPlusone (TPlusone value) |
| Assign a value to Plusone data member. More...
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TPlusone & | CMSChargeHandle_Base::SetPlusone (void) |
| Assign a value to Plusone data member. More...
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bool | CMSChargeHandle_Base::IsSetMaxproductcharge (void) const |
| maximum product ion charge Check if a value has been assigned to Maxproductcharge data member. More...
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bool | CMSChargeHandle_Base::CanGetMaxproductcharge (void) const |
| Check if it is safe to call GetMaxproductcharge method. More...
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void | CMSChargeHandle_Base::ResetMaxproductcharge (void) |
| Reset Maxproductcharge data member. More...
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TMaxproductcharge | CMSChargeHandle_Base::GetMaxproductcharge (void) const |
| Get the Maxproductcharge member data. More...
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void | CMSChargeHandle_Base::SetMaxproductcharge (TMaxproductcharge value) |
| Assign a value to Maxproductcharge data member. More...
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TMaxproductcharge & | CMSChargeHandle_Base::SetMaxproductcharge (void) |
| Assign a value to Maxproductcharge data member. More...
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bool | CMSChargeHandle_Base::IsSetProdlesspre (void) const |
| product charge always less thanor equal to precursor? Check if a value has been assigned to Prodlesspre data member. More...
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bool | CMSChargeHandle_Base::CanGetProdlesspre (void) const |
| Check if it is safe to call GetProdlesspre method. More...
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void | CMSChargeHandle_Base::ResetProdlesspre (void) |
| Reset Prodlesspre data member. More...
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TProdlesspre | CMSChargeHandle_Base::GetProdlesspre (void) const |
| Get the Prodlesspre member data. More...
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void | CMSChargeHandle_Base::SetProdlesspre (TProdlesspre value) |
| Assign a value to Prodlesspre data member. More...
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TProdlesspre & | CMSChargeHandle_Base::SetProdlesspre (void) |
| Assign a value to Prodlesspre data member. More...
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bool | CMSChargeHandle_Base::IsSetNegative (void) const |
| negative ion search if -1, positive ion if 1 Check if a value has been assigned to Negative data member. More...
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bool | CMSChargeHandle_Base::CanGetNegative (void) const |
| Check if it is safe to call GetNegative method. More...
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void | CMSChargeHandle_Base::ResetNegative (void) |
| Reset Negative data member. More...
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void | CMSChargeHandle_Base::SetDefaultNegative (void) |
| Assign default value to Negative data member. More...
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TNegative | CMSChargeHandle_Base::GetNegative (void) const |
| Get the Negative member data. More...
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void | CMSChargeHandle_Base::SetNegative (TNegative value) |
| Assign a value to Negative data member. More...
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TNegative & | CMSChargeHandle_Base::SetNegative (void) |
| Assign a value to Negative data member. More...
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virtual void | CMSChargeHandle_Base::Reset (void) |
| Reset the whole object. More...
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| CMSChargeHandle_Base::CMSChargeHandle_Base (const CMSChargeHandle_Base &) |
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CMSChargeHandle_Base & | CMSChargeHandle_Base::operator= (const CMSChargeHandle_Base &) |
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| CMSHits_Base::CMSHits_Base (void) |
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virtual | CMSHits_Base::~CMSHits_Base (void) |
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| CMSHits_Base::DECLARE_INTERNAL_TYPE_INFO () |
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bool | CMSHits_Base::IsSetEvalue (void) const |
| E-value (expect value) Check if a value has been assigned to Evalue data member. More...
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bool | CMSHits_Base::CanGetEvalue (void) const |
| Check if it is safe to call GetEvalue method. More...
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void | CMSHits_Base::ResetEvalue (void) |
| Reset Evalue data member. More...
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TEvalue | CMSHits_Base::GetEvalue (void) const |
| Get the Evalue member data. More...
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void | CMSHits_Base::SetEvalue (TEvalue value) |
| Assign a value to Evalue data member. More...
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TEvalue & | CMSHits_Base::SetEvalue (void) |
| Assign a value to Evalue data member. More...
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bool | CMSHits_Base::IsSetPvalue (void) const |
| P-value (probability value) Check if a value has been assigned to Pvalue data member. More...
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bool | CMSHits_Base::CanGetPvalue (void) const |
| Check if it is safe to call GetPvalue method. More...
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void | CMSHits_Base::ResetPvalue (void) |
| Reset Pvalue data member. More...
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TPvalue | CMSHits_Base::GetPvalue (void) const |
| Get the Pvalue member data. More...
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void | CMSHits_Base::SetPvalue (TPvalue value) |
| Assign a value to Pvalue data member. More...
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TPvalue & | CMSHits_Base::SetPvalue (void) |
| Assign a value to Pvalue data member. More...
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bool | CMSHits_Base::IsSetCharge (void) const |
| the charge state used in search. More...
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bool | CMSHits_Base::CanGetCharge (void) const |
| Check if it is safe to call GetCharge method. More...
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void | CMSHits_Base::ResetCharge (void) |
| Reset Charge data member. More...
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TCharge | CMSHits_Base::GetCharge (void) const |
| Get the Charge member data. More...
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void | CMSHits_Base::SetCharge (TCharge value) |
| Assign a value to Charge data member. More...
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TCharge & | CMSHits_Base::SetCharge (void) |
| Assign a value to Charge data member. More...
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bool | CMSHits_Base::IsSetPephits (void) const |
| peptides that match this hit Check if a value has been assigned to Pephits data member. More...
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bool | CMSHits_Base::CanGetPephits (void) const |
| Check if it is safe to call GetPephits method. More...
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void | CMSHits_Base::ResetPephits (void) |
| Reset Pephits data member. More...
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const TPephits & | CMSHits_Base::GetPephits (void) const |
| Get the Pephits member data. More...
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TPephits & | CMSHits_Base::SetPephits (void) |
| Assign a value to Pephits data member. More...
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bool | CMSHits_Base::IsSetMzhits (void) const |
| ions hit Check if a value has been assigned to Mzhits data member. More...
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bool | CMSHits_Base::CanGetMzhits (void) const |
| Check if it is safe to call GetMzhits method. More...
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void | CMSHits_Base::ResetMzhits (void) |
| Reset Mzhits data member. More...
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const TMzhits & | CMSHits_Base::GetMzhits (void) const |
| Get the Mzhits member data. More...
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TMzhits & | CMSHits_Base::SetMzhits (void) |
| Assign a value to Mzhits data member. More...
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bool | CMSHits_Base::IsSetPepstring (void) const |
| the peptide sequence Check if a value has been assigned to Pepstring data member. More...
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bool | CMSHits_Base::CanGetPepstring (void) const |
| Check if it is safe to call GetPepstring method. More...
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void | CMSHits_Base::ResetPepstring (void) |
| Reset Pepstring data member. More...
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const TPepstring & | CMSHits_Base::GetPepstring (void) const |
| Get the Pepstring member data. More...
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void | CMSHits_Base::SetPepstring (const TPepstring &value) |
| Assign a value to Pepstring data member. More...
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void | CMSHits_Base::SetPepstring (TPepstring &&value) |
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TPepstring & | CMSHits_Base::SetPepstring (void) |
| Assign a value to Pepstring data member. More...
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bool | CMSHits_Base::IsSetMass (void) const |
| scaled experimental mass of peptide in Da Check if a value has been assigned to Mass data member. More...
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bool | CMSHits_Base::CanGetMass (void) const |
| Check if it is safe to call GetMass method. More...
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void | CMSHits_Base::ResetMass (void) |
| Reset Mass data member. More...
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TMass | CMSHits_Base::GetMass (void) const |
| Get the Mass member data. More...
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void | CMSHits_Base::SetMass (TMass value) |
| Assign a value to Mass data member. More...
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TMass & | CMSHits_Base::SetMass (void) |
| Assign a value to Mass data member. More...
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bool | CMSHits_Base::IsSetMods (void) const |
| modifications to sequence Check if a value has been assigned to Mods data member. More...
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bool | CMSHits_Base::CanGetMods (void) const |
| Check if it is safe to call GetMods method. More...
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void | CMSHits_Base::ResetMods (void) |
| Reset Mods data member. More...
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const TMods & | CMSHits_Base::GetMods (void) const |
| Get the Mods member data. More...
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TMods & | CMSHits_Base::SetMods (void) |
| Assign a value to Mods data member. More...
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bool | CMSHits_Base::IsSetPepstart (void) const |
| AA before the peptide (depricated) Check if a value has been assigned to Pepstart data member. More...
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bool | CMSHits_Base::CanGetPepstart (void) const |
| Check if it is safe to call GetPepstart method. More...
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void | CMSHits_Base::ResetPepstart (void) |
| Reset Pepstart data member. More...
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const TPepstart & | CMSHits_Base::GetPepstart (void) const |
| Get the Pepstart member data. More...
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void | CMSHits_Base::SetPepstart (const TPepstart &value) |
| Assign a value to Pepstart data member. More...
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void | CMSHits_Base::SetPepstart (TPepstart &&value) |
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TPepstart & | CMSHits_Base::SetPepstart (void) |
| Assign a value to Pepstart data member. More...
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bool | CMSHits_Base::IsSetPepstop (void) const |
| AA after the peptide (depricated) Check if a value has been assigned to Pepstop data member. More...
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bool | CMSHits_Base::CanGetPepstop (void) const |
| Check if it is safe to call GetPepstop method. More...
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void | CMSHits_Base::ResetPepstop (void) |
| Reset Pepstop data member. More...
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const TPepstop & | CMSHits_Base::GetPepstop (void) const |
| Get the Pepstop member data. More...
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void | CMSHits_Base::SetPepstop (const TPepstop &value) |
| Assign a value to Pepstop data member. More...
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void | CMSHits_Base::SetPepstop (TPepstop &&value) |
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TPepstop & | CMSHits_Base::SetPepstop (void) |
| Assign a value to Pepstop data member. More...
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bool | CMSHits_Base::IsSetProtlength (void) const |
| length of protein hit (depricated) Check if a value has been assigned to Protlength data member. More...
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bool | CMSHits_Base::CanGetProtlength (void) const |
| Check if it is safe to call GetProtlength method. More...
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void | CMSHits_Base::ResetProtlength (void) |
| Reset Protlength data member. More...
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TProtlength | CMSHits_Base::GetProtlength (void) const |
| Get the Protlength member data. More...
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void | CMSHits_Base::SetProtlength (TProtlength value) |
| Assign a value to Protlength data member. More...
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TProtlength & | CMSHits_Base::SetProtlength (void) |
| Assign a value to Protlength data member. More...
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bool | CMSHits_Base::IsSetTheomass (void) const |
| scaled theoretical mass of peptide hit Check if a value has been assigned to Theomass data member. More...
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bool | CMSHits_Base::CanGetTheomass (void) const |
| Check if it is safe to call GetTheomass method. More...
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void | CMSHits_Base::ResetTheomass (void) |
| Reset Theomass data member. More...
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TTheomass | CMSHits_Base::GetTheomass (void) const |
| Get the Theomass member data. More...
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void | CMSHits_Base::SetTheomass (TTheomass value) |
| Assign a value to Theomass data member. More...
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TTheomass & | CMSHits_Base::SetTheomass (void) |
| Assign a value to Theomass data member. More...
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bool | CMSHits_Base::IsSetOid (void) const |
| blast library oid (depricated) Check if a value has been assigned to Oid data member. More...
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bool | CMSHits_Base::CanGetOid (void) const |
| Check if it is safe to call GetOid method. More...
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void | CMSHits_Base::ResetOid (void) |
| Reset Oid data member. More...
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TOid | CMSHits_Base::GetOid (void) const |
| Get the Oid member data. More...
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void | CMSHits_Base::SetOid (TOid value) |
| Assign a value to Oid data member. More...
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TOid & | CMSHits_Base::SetOid (void) |
| Assign a value to Oid data member. More...
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bool | CMSHits_Base::IsSetScores (void) const |
| optional scores (for library search) Check if a value has been assigned to Scores data member. More...
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bool | CMSHits_Base::CanGetScores (void) const |
| Check if it is safe to call GetScores method. More...
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void | CMSHits_Base::ResetScores (void) |
| Reset Scores data member. More...
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const TScores & | CMSHits_Base::GetScores (void) const |
| Get the Scores member data. More...
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TScores & | CMSHits_Base::SetScores (void) |
| Assign a value to Scores data member. More...
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bool | CMSHits_Base::IsSetLibaccession (void) const |
| library search accesssion Check if a value has been assigned to Libaccession data member. More...
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bool | CMSHits_Base::CanGetLibaccession (void) const |
| Check if it is safe to call GetLibaccession method. More...
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void | CMSHits_Base::ResetLibaccession (void) |
| Reset Libaccession data member. More...
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const TLibaccession & | CMSHits_Base::GetLibaccession (void) const |
| Get the Libaccession member data. More...
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void | CMSHits_Base::SetLibaccession (const TLibaccession &value) |
| Assign a value to Libaccession data member. More...
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void | CMSHits_Base::SetLibaccession (TLibaccession &&value) |
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TLibaccession & | CMSHits_Base::SetLibaccession (void) |
| Assign a value to Libaccession data member. More...
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virtual void | CMSHits_Base::Reset (void) |
| Reset the whole object. More...
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| CMSHits_Base::CMSHits_Base (const CMSHits_Base &) |
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CMSHits_Base & | CMSHits_Base::operator= (const CMSHits_Base &) |
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| CMSHitSet::CMSHitSet (void) |
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| CMSHitSet::~CMSHitSet (void) |
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| CMSHitSet::CMSHitSet (const CMSHitSet &value) |
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CMSHitSet & | CMSHitSet::operator= (const CMSHitSet &value) |
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| CMSHitSet_Base::CMSHitSet_Base (void) |
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virtual | CMSHitSet_Base::~CMSHitSet_Base (void) |
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| CMSHitSet_Base::DECLARE_INTERNAL_TYPE_INFO () |
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bool | CMSHitSet_Base::IsSetNumber (void) const |
| unique number of spectrum Check if a value has been assigned to Number data member. More...
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bool | CMSHitSet_Base::CanGetNumber (void) const |
| Check if it is safe to call GetNumber method. More...
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void | CMSHitSet_Base::ResetNumber (void) |
| Reset Number data member. More...
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TNumber | CMSHitSet_Base::GetNumber (void) const |
| Get the Number member data. More...
|
|
void | CMSHitSet_Base::SetNumber (TNumber value) |
| Assign a value to Number data member. More...
|
|
TNumber & | CMSHitSet_Base::SetNumber (void) |
| Assign a value to Number data member. More...
|
|
bool | CMSHitSet_Base::IsSetError (void) const |
| error, if any Check if a value has been assigned to Error data member. More...
|
|
bool | CMSHitSet_Base::CanGetError (void) const |
| Check if it is safe to call GetError method. More...
|
|
void | CMSHitSet_Base::ResetError (void) |
| Reset Error data member. More...
|
|
TError | CMSHitSet_Base::GetError (void) const |
| Get the Error member data. More...
|
|
void | CMSHitSet_Base::SetError (TError value) |
| Assign a value to Error data member. More...
|
|
TError & | CMSHitSet_Base::SetError (void) |
| Assign a value to Error data member. More...
|
|
bool | CMSHitSet_Base::IsSetHits (void) const |
| set of hit to spectrum Check if a value has been assigned to Hits data member. More...
|
|
bool | CMSHitSet_Base::CanGetHits (void) const |
| Check if it is safe to call GetHits method. More...
|
|
void | CMSHitSet_Base::ResetHits (void) |
| Reset Hits data member. More...
|
|
const THits & | CMSHitSet_Base::GetHits (void) const |
| Get the Hits member data. More...
|
|
THits & | CMSHitSet_Base::SetHits (void) |
| Assign a value to Hits data member. More...
|
|
bool | CMSHitSet_Base::IsSetIds (void) const |
| filenames or other ids of spectra searched Check if a value has been assigned to Ids data member. More...
|
|
bool | CMSHitSet_Base::CanGetIds (void) const |
| Check if it is safe to call GetIds method. More...
|
|
void | CMSHitSet_Base::ResetIds (void) |
| Reset Ids data member. More...
|
|
const TIds & | CMSHitSet_Base::GetIds (void) const |
| Get the Ids member data. More...
|
|
TIds & | CMSHitSet_Base::SetIds (void) |
| Assign a value to Ids data member. More...
|
|
bool | CMSHitSet_Base::IsSetNamevalue (void) const |
| extra info: retention times, etc. More...
|
|
bool | CMSHitSet_Base::CanGetNamevalue (void) const |
| Check if it is safe to call GetNamevalue method. More...
|
|
void | CMSHitSet_Base::ResetNamevalue (void) |
| Reset Namevalue data member. More...
|
|
const TNamevalue & | CMSHitSet_Base::GetNamevalue (void) const |
| Get the Namevalue member data. More...
|
|
TNamevalue & | CMSHitSet_Base::SetNamevalue (void) |
| Assign a value to Namevalue data member. More...
|
|
bool | CMSHitSet_Base::IsSetSettingid (void) const |
| id of the search setting used Check if a value has been assigned to Settingid data member. More...
|
|
bool | CMSHitSet_Base::CanGetSettingid (void) const |
| Check if it is safe to call GetSettingid method. More...
|
|
void | CMSHitSet_Base::ResetSettingid (void) |
| Reset Settingid data member. More...
|
|
TSettingid | CMSHitSet_Base::GetSettingid (void) const |
| Get the Settingid member data. More...
|
|
void | CMSHitSet_Base::SetSettingid (TSettingid value) |
| Assign a value to Settingid data member. More...
|
|
TSettingid & | CMSHitSet_Base::SetSettingid (void) |
| Assign a value to Settingid data member. More...
|
|
bool | CMSHitSet_Base::IsSetUserannotation (void) const |
| allows users to flag certain Check if a value has been assigned to Userannotation data member. More...
|
|
bool | CMSHitSet_Base::CanGetUserannotation (void) const |
| Check if it is safe to call GetUserannotation method. More...
|
|
void | CMSHitSet_Base::ResetUserannotation (void) |
| Reset Userannotation data member. More...
|
|
TUserannotation | CMSHitSet_Base::GetUserannotation (void) const |
| Get the Userannotation member data. More...
|
|
void | CMSHitSet_Base::SetUserannotation (TUserannotation value) |
| Assign a value to Userannotation data member. More...
|
|
TUserannotation & | CMSHitSet_Base::SetUserannotation (void) |
| Assign a value to Userannotation data member. More...
|
|
virtual void | CMSHitSet_Base::Reset (void) |
| Reset the whole object. More...
|
|
| CMSHitSet_Base::CMSHitSet_Base (const CMSHitSet_Base &) |
|
CMSHitSet_Base & | CMSHitSet_Base::operator= (const CMSHitSet_Base &) |
|
| CMSImmonium::CMSImmonium (void) |
|
| CMSImmonium::~CMSImmonium (void) |
|
| CMSImmonium::CMSImmonium (const CMSImmonium &value) |
|
CMSImmonium & | CMSImmonium::operator= (const CMSImmonium &value) |
|
| CMSImmonium_Base::CMSImmonium_Base (void) |
|
virtual | CMSImmonium_Base::~CMSImmonium_Base (void) |
|
| CMSImmonium_Base::DECLARE_INTERNAL_TYPE_INFO () |
|
bool | CMSImmonium_Base::IsSetParent (void) const |
| parent amino acid Check if a value has been assigned to Parent data member. More...
|
|
bool | CMSImmonium_Base::CanGetParent (void) const |
| Check if it is safe to call GetParent method. More...
|
|
void | CMSImmonium_Base::ResetParent (void) |
| Reset Parent data member. More...
|
|
const TParent & | CMSImmonium_Base::GetParent (void) const |
| Get the Parent member data. More...
|
|
void | CMSImmonium_Base::SetParent (const TParent &value) |
| Assign a value to Parent data member. More...
|
|
void | CMSImmonium_Base::SetParent (TParent &&value) |
|
TParent & | CMSImmonium_Base::SetParent (void) |
| Assign a value to Parent data member. More...
|
|
bool | CMSImmonium_Base::IsSetProduct (void) const |
| product ion code Check if a value has been assigned to Product data member. More...
|
|
bool | CMSImmonium_Base::CanGetProduct (void) const |
| Check if it is safe to call GetProduct method. More...
|
|
void | CMSImmonium_Base::ResetProduct (void) |
| Reset Product data member. More...
|
|
const TProduct & | CMSImmonium_Base::GetProduct (void) const |
| Get the Product member data. More...
|
|
void | CMSImmonium_Base::SetProduct (const TProduct &value) |
| Assign a value to Product data member. More...
|
|
void | CMSImmonium_Base::SetProduct (TProduct &&value) |
|
TProduct & | CMSImmonium_Base::SetProduct (void) |
| Assign a value to Product data member. More...
|
|
virtual void | CMSImmonium_Base::Reset (void) |
| Reset the whole object. More...
|
|
| CMSImmonium_Base::CMSImmonium_Base (const CMSImmonium_Base &) |
|
CMSImmonium_Base & | CMSImmonium_Base::operator= (const CMSImmonium_Base &) |
|
| CMSInFile::CMSInFile (void) |
|
| CMSInFile::~CMSInFile (void) |
|
| CMSInFile::CMSInFile (const CMSInFile &value) |
|
CMSInFile & | CMSInFile::operator= (const CMSInFile &value) |
|
| CMSInFile_Base::CMSInFile_Base (void) |
|
virtual | CMSInFile_Base::~CMSInFile_Base (void) |
|
| CMSInFile_Base::DECLARE_INTERNAL_TYPE_INFO () |
|
bool | CMSInFile_Base::IsSetInfile (void) const |
| input file name Check if a value has been assigned to Infile data member. More...
|
|
bool | CMSInFile_Base::CanGetInfile (void) const |
| Check if it is safe to call GetInfile method. More...
|
|
void | CMSInFile_Base::ResetInfile (void) |
| Reset Infile data member. More...
|
|
const TInfile & | CMSInFile_Base::GetInfile (void) const |
| Get the Infile member data. More...
|
|
void | CMSInFile_Base::SetInfile (const TInfile &value) |
| Assign a value to Infile data member. More...
|
|
void | CMSInFile_Base::SetInfile (TInfile &&value) |
|
TInfile & | CMSInFile_Base::SetInfile (void) |
| Assign a value to Infile data member. More...
|
|
bool | CMSInFile_Base::IsSetInfiletype (void) const |
| input file type Check if a value has been assigned to Infiletype data member. More...
|
|
bool | CMSInFile_Base::CanGetInfiletype (void) const |
| Check if it is safe to call GetInfiletype method. More...
|
|
void | CMSInFile_Base::ResetInfiletype (void) |
| Reset Infiletype data member. More...
|
|
TInfiletype | CMSInFile_Base::GetInfiletype (void) const |
| Get the Infiletype member data. More...
|
|
void | CMSInFile_Base::SetInfiletype (TInfiletype value) |
| Assign a value to Infiletype data member. More...
|
|
TInfiletype & | CMSInFile_Base::SetInfiletype (void) |
| Assign a value to Infiletype data member. More...
|
|
virtual void | CMSInFile_Base::Reset (void) |
| Reset the whole object. More...
|
|
| CMSInFile_Base::CMSInFile_Base (const CMSInFile_Base &) |
|
CMSInFile_Base & | CMSInFile_Base::operator= (const CMSInFile_Base &) |
|
| CMSIon::CMSIon (void) |
|
| CMSIon::~CMSIon (void) |
|
| CMSIon::CMSIon (const CMSIon &value) |
|
CMSIon & | CMSIon::operator= (const CMSIon &value) |
|
| CMSIon_Base::CMSIon_Base (void) |
|
virtual | CMSIon_Base::~CMSIon_Base (void) |
|
| CMSIon_Base::DECLARE_INTERNAL_TYPE_INFO () |
|
bool | CMSIon_Base::IsSetNeutralloss (void) const |
| is this peak a neutral loss? Check if a value has been assigned to Neutralloss data member. More...
|
|
bool | CMSIon_Base::CanGetNeutralloss (void) const |
| Check if it is safe to call GetNeutralloss method. More...
|
|
void | CMSIon_Base::ResetNeutralloss (void) |
| Reset Neutralloss data member. More...
|
|
TNeutralloss | CMSIon_Base::GetNeutralloss (void) const |
| Get the Neutralloss member data. More...
|
|
void | CMSIon_Base::SetNeutralloss (TNeutralloss value) |
| Assign a value to Neutralloss data member. More...
|
|
TNeutralloss & | CMSIon_Base::SetNeutralloss (void) |
| Assign a value to Neutralloss data member. More...
|
|
bool | CMSIon_Base::IsSetIsotope (void) const |
| isotopic composition of peak Check if a value has been assigned to Isotope data member. More...
|
|
bool | CMSIon_Base::CanGetIsotope (void) const |
| Check if it is safe to call GetIsotope method. More...
|
|
void | CMSIon_Base::ResetIsotope (void) |
| Reset Isotope data member. More...
|
|
TIsotope | CMSIon_Base::GetIsotope (void) const |
| Get the Isotope member data. More...
|
|
void | CMSIon_Base::SetIsotope (TIsotope value) |
| Assign a value to Isotope data member. More...
|
|
TIsotope & | CMSIon_Base::SetIsotope (void) |
| Assign a value to Isotope data member. More...
|
|
bool | CMSIon_Base::IsSetInternal (void) const |
| if iontype is internal, this is the internal sequence Check if a value has been assigned to Internal data member. More...
|
|
bool | CMSIon_Base::CanGetInternal (void) const |
| Check if it is safe to call GetInternal method. More...
|
|
void | CMSIon_Base::ResetInternal (void) |
| Reset Internal data member. More...
|
|
const TInternal & | CMSIon_Base::GetInternal (void) const |
| Get the Internal member data. More...
|
|
void | CMSIon_Base::SetInternal (const TInternal &value) |
| Assign a value to Internal data member. More...
|
|
void | CMSIon_Base::SetInternal (TInternal &&value) |
|
TInternal & | CMSIon_Base::SetInternal (void) |
| Assign a value to Internal data member. More...
|
|
bool | CMSIon_Base::IsSetImmonium (void) const |
| if iontype is immonium, show characteristics Check if a value has been assigned to Immonium data member. More...
|
|
bool | CMSIon_Base::CanGetImmonium (void) const |
| Check if it is safe to call GetImmonium method. More...
|
|
void | CMSIon_Base::ResetImmonium (void) |
| Reset Immonium data member. More...
|
|
const TImmonium & | CMSIon_Base::GetImmonium (void) const |
| Get the Immonium member data. More...
|
|
void | CMSIon_Base::SetImmonium (TImmonium &value) |
| Assign a value to Immonium data member. More...
|
|
TImmonium & | CMSIon_Base::SetImmonium (void) |
| Assign a value to Immonium data member. More...
|
|
virtual void | CMSIon_Base::Reset (void) |
| Reset the whole object. More...
|
|
| CMSIon_Base::CMSIon_Base (const CMSIon_Base &) |
|
CMSIon_Base & | CMSIon_Base::operator= (const CMSIon_Base &) |
|
| CMSIonAnnot::CMSIonAnnot (void) |
|
| CMSIonAnnot::~CMSIonAnnot (void) |
|
| CMSIonAnnot::CMSIonAnnot (const CMSIonAnnot &value) |
|
CMSIonAnnot & | CMSIonAnnot::operator= (const CMSIonAnnot &value) |
|
| CMSIonAnnot_Base::CMSIonAnnot_Base (void) |
|
virtual | CMSIonAnnot_Base::~CMSIonAnnot_Base (void) |
|
| CMSIonAnnot_Base::DECLARE_INTERNAL_TYPE_INFO () |
|
bool | CMSIonAnnot_Base::IsSetSuspect (void) const |
| is this peak suspect? Check if a value has been assigned to Suspect data member. More...
|
|
bool | CMSIonAnnot_Base::CanGetSuspect (void) const |
| Check if it is safe to call GetSuspect method. More...
|
|
void | CMSIonAnnot_Base::ResetSuspect (void) |
| Reset Suspect data member. More...
|
|
TSuspect | CMSIonAnnot_Base::GetSuspect (void) const |
| Get the Suspect member data. More...
|
|
void | CMSIonAnnot_Base::SetSuspect (TSuspect value) |
| Assign a value to Suspect data member. More...
|
|
TSuspect & | CMSIonAnnot_Base::SetSuspect (void) |
| Assign a value to Suspect data member. More...
|
|
bool | CMSIonAnnot_Base::IsSetMassdiff (void) const |
| what is the difference in mass from library spectrum? Check if a value has been assigned to Massdiff data member. More...
|
|
bool | CMSIonAnnot_Base::CanGetMassdiff (void) const |
| Check if it is safe to call GetMassdiff method. More...
|
|
void | CMSIonAnnot_Base::ResetMassdiff (void) |
| Reset Massdiff data member. More...
|
|
TMassdiff | CMSIonAnnot_Base::GetMassdiff (void) const |
| Get the Massdiff member data. More...
|
|
void | CMSIonAnnot_Base::SetMassdiff (TMassdiff value) |
| Assign a value to Massdiff data member. More...
|
|
TMassdiff & | CMSIonAnnot_Base::SetMassdiff (void) |
| Assign a value to Massdiff data member. More...
|
|
bool | CMSIonAnnot_Base::IsSetMissingisotope (void) const |
| are the lower mass peaks missing? Check if a value has been assigned to Missingisotope data member. More...
|
|
bool | CMSIonAnnot_Base::CanGetMissingisotope (void) const |
| Check if it is safe to call GetMissingisotope method. More...
|
|
void | CMSIonAnnot_Base::ResetMissingisotope (void) |
| Reset Missingisotope data member. More...
|
|
TMissingisotope | CMSIonAnnot_Base::GetMissingisotope (void) const |
| Get the Missingisotope member data. More...
|
|
void | CMSIonAnnot_Base::SetMissingisotope (TMissingisotope value) |
| Assign a value to Missingisotope data member. More...
|
|
TMissingisotope & | CMSIonAnnot_Base::SetMissingisotope (void) |
| Assign a value to Missingisotope data member. More...
|
|
virtual void | CMSIonAnnot_Base::Reset (void) |
| Reset the whole object. More...
|
|
| CMSIonAnnot_Base::CMSIonAnnot_Base (const CMSIonAnnot_Base &) |
|
CMSIonAnnot_Base & | CMSIonAnnot_Base::operator= (const CMSIonAnnot_Base &) |
|
| CMSIterativeSettings::CMSIterativeSettings (void) |
|
| CMSIterativeSettings::~CMSIterativeSettings (void) |
|
| CMSIterativeSettings::CMSIterativeSettings (const CMSIterativeSettings &value) |
|
CMSIterativeSettings & | CMSIterativeSettings::operator= (const CMSIterativeSettings &value) |
|
| CMSIterativeSettings_Base::CMSIterativeSettings_Base (void) |
|
virtual | CMSIterativeSettings_Base::~CMSIterativeSettings_Base (void) |
|
| CMSIterativeSettings_Base::DECLARE_INTERNAL_TYPE_INFO () |
|
bool | CMSIterativeSettings_Base::IsSetResearchthresh (void) const |
| e-val threshold for re-searching spectra, 0 = always re-search Check if a value has been assigned to Researchthresh data member. More...
|
|
bool | CMSIterativeSettings_Base::CanGetResearchthresh (void) const |
| Check if it is safe to call GetResearchthresh method. More...
|
|
void | CMSIterativeSettings_Base::ResetResearchthresh (void) |
| Reset Researchthresh data member. More...
|
|
TResearchthresh | CMSIterativeSettings_Base::GetResearchthresh (void) const |
| Get the Researchthresh member data. More...
|
|
void | CMSIterativeSettings_Base::SetResearchthresh (TResearchthresh value) |
| Assign a value to Researchthresh data member. More...
|
|
TResearchthresh & | CMSIterativeSettings_Base::SetResearchthresh (void) |
| Assign a value to Researchthresh data member. More...
|
|
bool | CMSIterativeSettings_Base::IsSetSubsetthresh (void) const |
| e-val threshold for picking sequence subset, 0 = all sequences Check if a value has been assigned to Subsetthresh data member. More...
|
|
bool | CMSIterativeSettings_Base::CanGetSubsetthresh (void) const |
| Check if it is safe to call GetSubsetthresh method. More...
|
|
void | CMSIterativeSettings_Base::ResetSubsetthresh (void) |
| Reset Subsetthresh data member. More...
|
|
TSubsetthresh | CMSIterativeSettings_Base::GetSubsetthresh (void) const |
| Get the Subsetthresh member data. More...
|
|
void | CMSIterativeSettings_Base::SetSubsetthresh (TSubsetthresh value) |
| Assign a value to Subsetthresh data member. More...
|
|
TSubsetthresh & | CMSIterativeSettings_Base::SetSubsetthresh (void) |
| Assign a value to Subsetthresh data member. More...
|
|
bool | CMSIterativeSettings_Base::IsSetReplacethresh (void) const |
| e-val threshold for replacing hitset, 0 = only if better Check if a value has been assigned to Replacethresh data member. More...
|
|
bool | CMSIterativeSettings_Base::CanGetReplacethresh (void) const |
| Check if it is safe to call GetReplacethresh method. More...
|
|
void | CMSIterativeSettings_Base::ResetReplacethresh (void) |
| Reset Replacethresh data member. More...
|
|
TReplacethresh | CMSIterativeSettings_Base::GetReplacethresh (void) const |
| Get the Replacethresh member data. More...
|
|
void | CMSIterativeSettings_Base::SetReplacethresh (TReplacethresh value) |
| Assign a value to Replacethresh data member. More...
|
|
TReplacethresh & | CMSIterativeSettings_Base::SetReplacethresh (void) |
| Assign a value to Replacethresh data member. More...
|
|
virtual void | CMSIterativeSettings_Base::Reset (void) |
| Reset the whole object. More...
|
|
| CMSIterativeSettings_Base::CMSIterativeSettings_Base (const CMSIterativeSettings_Base &) |
|
CMSIterativeSettings_Base & | CMSIterativeSettings_Base::operator= (const CMSIterativeSettings_Base &) |
|
| CMSLibrarySettings::CMSLibrarySettings (void) |
|
| CMSLibrarySettings::~CMSLibrarySettings (void) |
|
| CMSLibrarySettings::CMSLibrarySettings (const CMSLibrarySettings &value) |
|
CMSLibrarySettings & | CMSLibrarySettings::operator= (const CMSLibrarySettings &value) |
|
| CMSLibrarySettings_Base::CMSLibrarySettings_Base (void) |
|
virtual | CMSLibrarySettings_Base::~CMSLibrarySettings_Base (void) |
|
| CMSLibrarySettings_Base::DECLARE_INTERNAL_TYPE_INFO () |
|
bool | CMSLibrarySettings_Base::IsSetLibnames (void) const |
| names of search libraries Check if a value has been assigned to Libnames data member. More...
|
|
bool | CMSLibrarySettings_Base::CanGetLibnames (void) const |
| Check if it is safe to call GetLibnames method. More...
|
|
void | CMSLibrarySettings_Base::ResetLibnames (void) |
| Reset Libnames data member. More...
|
|
const TLibnames & | CMSLibrarySettings_Base::GetLibnames (void) const |
| Get the Libnames member data. More...
|
|
TLibnames & | CMSLibrarySettings_Base::SetLibnames (void) |
| Assign a value to Libnames data member. More...
|
|
bool | CMSLibrarySettings_Base::IsSetPresearch (void) const |
| should there be a restriction on precursor mass? Check if a value has been assigned to Presearch data member. More...
|
|
bool | CMSLibrarySettings_Base::CanGetPresearch (void) const |
| Check if it is safe to call GetPresearch method. More...
|
|
void | CMSLibrarySettings_Base::ResetPresearch (void) |
| Reset Presearch data member. More...
|
|
TPresearch | CMSLibrarySettings_Base::GetPresearch (void) const |
| Get the Presearch member data. More...
|
|
void | CMSLibrarySettings_Base::SetPresearch (TPresearch value) |
| Assign a value to Presearch data member. More...
|
|
TPresearch & | CMSLibrarySettings_Base::SetPresearch (void) |
| Assign a value to Presearch data member. More...
|
|
bool | CMSLibrarySettings_Base::IsSetUseomssascore (void) const |
| use the omssa score? Check if a value has been assigned to Useomssascore data member. More...
|
|
bool | CMSLibrarySettings_Base::CanGetUseomssascore (void) const |
| Check if it is safe to call GetUseomssascore method. More...
|
|
void | CMSLibrarySettings_Base::ResetUseomssascore (void) |
| Reset Useomssascore data member. More...
|
|
TUseomssascore | CMSLibrarySettings_Base::GetUseomssascore (void) const |
| Get the Useomssascore member data. More...
|
|
void | CMSLibrarySettings_Base::SetUseomssascore (TUseomssascore value) |
| Assign a value to Useomssascore data member. More...
|
|
TUseomssascore & | CMSLibrarySettings_Base::SetUseomssascore (void) |
| Assign a value to Useomssascore data member. More...
|
|
bool | CMSLibrarySettings_Base::IsSetUsereplicatescore (void) const |
| use the number of replicates score? Check if a value has been assigned to Usereplicatescore data member. More...
|
|
bool | CMSLibrarySettings_Base::CanGetUsereplicatescore (void) const |
| Check if it is safe to call GetUsereplicatescore method. More...
|
|
void | CMSLibrarySettings_Base::ResetUsereplicatescore (void) |
| Reset Usereplicatescore data member. More...
|
|
TUsereplicatescore | CMSLibrarySettings_Base::GetUsereplicatescore (void) const |
| Get the Usereplicatescore member data. More...
|
|
void | CMSLibrarySettings_Base::SetUsereplicatescore (TUsereplicatescore value) |
| Assign a value to Usereplicatescore data member. More...
|
|
TUsereplicatescore & | CMSLibrarySettings_Base::SetUsereplicatescore (void) |
| Assign a value to Usereplicatescore data member. More...
|
|
bool | CMSLibrarySettings_Base::IsSetQtofscore (void) const |
| use the qtof score? Check if a value has been assigned to Qtofscore data member. More...
|
|
bool | CMSLibrarySettings_Base::CanGetQtofscore (void) const |
| Check if it is safe to call GetQtofscore method. More...
|
|
void | CMSLibrarySettings_Base::ResetQtofscore (void) |
| Reset Qtofscore data member. More...
|
|
TQtofscore | CMSLibrarySettings_Base::GetQtofscore (void) const |
| Get the Qtofscore member data. More...
|
|
void | CMSLibrarySettings_Base::SetQtofscore (TQtofscore value) |
| Assign a value to Qtofscore data member. More...
|
|
TQtofscore & | CMSLibrarySettings_Base::SetQtofscore (void) |
| Assign a value to Qtofscore data member. More...
|
|
virtual void | CMSLibrarySettings_Base::Reset (void) |
| Reset the whole object. More...
|
|
| CMSLibrarySettings_Base::CMSLibrarySettings_Base (const CMSLibrarySettings_Base &) |
|
CMSLibrarySettings_Base & | CMSLibrarySettings_Base::operator= (const CMSLibrarySettings_Base &) |
|
| CMSMassSet::CMSMassSet (void) |
|
| CMSMassSet::~CMSMassSet (void) |
|
| CMSMassSet::CMSMassSet (const CMSMassSet &value) |
|
CMSMassSet & | CMSMassSet::operator= (const CMSMassSet &value) |
|
| CMSMassSet_Base::CMSMassSet_Base (void) |
|
virtual | CMSMassSet_Base::~CMSMassSet_Base (void) |
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| CMSMassSet_Base::DECLARE_INTERNAL_TYPE_INFO () |
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bool | CMSMassSet_Base::IsSetMonomass (void) const |
| Check if a value has been assigned to Monomass data member. More...
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bool | CMSMassSet_Base::CanGetMonomass (void) const |
| Check if it is safe to call GetMonomass method. More...
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void | CMSMassSet_Base::ResetMonomass (void) |
| Reset Monomass data member. More...
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TMonomass | CMSMassSet_Base::GetMonomass (void) const |
| Get the Monomass member data. More...
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void | CMSMassSet_Base::SetMonomass (TMonomass value) |
| Assign a value to Monomass data member. More...
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TMonomass & | CMSMassSet_Base::SetMonomass (void) |
| Assign a value to Monomass data member. More...
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bool | CMSMassSet_Base::IsSetAveragemass (void) const |
| Check if a value has been assigned to Averagemass data member. More...
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bool | CMSMassSet_Base::CanGetAveragemass (void) const |
| Check if it is safe to call GetAveragemass method. More...
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void | CMSMassSet_Base::ResetAveragemass (void) |
| Reset Averagemass data member. More...
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TAveragemass | CMSMassSet_Base::GetAveragemass (void) const |
| Get the Averagemass member data. More...
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void | CMSMassSet_Base::SetAveragemass (TAveragemass value) |
| Assign a value to Averagemass data member. More...
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TAveragemass & | CMSMassSet_Base::SetAveragemass (void) |
| Assign a value to Averagemass data member. More...
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bool | CMSMassSet_Base::IsSetN15mass (void) const |
| Check if a value has been assigned to N15mass data member. More...
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bool | CMSMassSet_Base::CanGetN15mass (void) const |
| Check if it is safe to call GetN15mass method. More...
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void | CMSMassSet_Base::ResetN15mass (void) |
| Reset N15mass data member. More...
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TN15mass | CMSMassSet_Base::GetN15mass (void) const |
| Get the N15mass member data. More...
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void | CMSMassSet_Base::SetN15mass (TN15mass value) |
| Assign a value to N15mass data member. More...
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TN15mass & | CMSMassSet_Base::SetN15mass (void) |
| Assign a value to N15mass data member. More...
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virtual void | CMSMassSet_Base::Reset (void) |
| Reset the whole object. More...
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| CMSMassSet_Base::CMSMassSet_Base (const CMSMassSet_Base &) |
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CMSMassSet_Base & | CMSMassSet_Base::operator= (const CMSMassSet_Base &) |
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| CMSModHit::CMSModHit (void) |
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| CMSModHit::~CMSModHit (void) |
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| CMSModHit::CMSModHit (const CMSModHit &value) |
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CMSModHit & | CMSModHit::operator= (const CMSModHit &value) |
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| CMSModHit_Base::CMSModHit_Base (void) |
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virtual | CMSModHit_Base::~CMSModHit_Base (void) |
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| CMSModHit_Base::DECLARE_INTERNAL_TYPE_INFO () |
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bool | CMSModHit_Base::IsSetSite (void) const |
| the position in the peptide Check if a value has been assigned to Site data member. More...
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bool | CMSModHit_Base::CanGetSite (void) const |
| Check if it is safe to call GetSite method. More...
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void | CMSModHit_Base::ResetSite (void) |
| Reset Site data member. More...
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TSite | CMSModHit_Base::GetSite (void) const |
| Get the Site member data. More...
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void | CMSModHit_Base::SetSite (TSite value) |
| Assign a value to Site data member. More...
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TSite & | CMSModHit_Base::SetSite (void) |
| Assign a value to Site data member. More...
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bool | CMSModHit_Base::IsSetModtype (void) const |
| the type of modification Check if a value has been assigned to Modtype data member. More...
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bool | CMSModHit_Base::CanGetModtype (void) const |
| Check if it is safe to call GetModtype method. More...
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void | CMSModHit_Base::ResetModtype (void) |
| Reset Modtype data member. More...
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TModtype | CMSModHit_Base::GetModtype (void) const |
| Get the Modtype member data. More...
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void | CMSModHit_Base::SetModtype (TModtype value) |
| Assign a value to Modtype data member. More...
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TModtype & | CMSModHit_Base::SetModtype (void) |
| Assign a value to Modtype data member. More...
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virtual void | CMSModHit_Base::Reset (void) |
| Reset the whole object. More...
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| CMSModHit_Base::CMSModHit_Base (const CMSModHit_Base &) |
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CMSModHit_Base & | CMSModHit_Base::operator= (const CMSModHit_Base &) |
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| CMSModSpec::CMSModSpec (void) |
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| CMSModSpec::~CMSModSpec (void) |
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| CMSModSpec::CMSModSpec (const CMSModSpec &value) |
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CMSModSpec & | CMSModSpec::operator= (const CMSModSpec &value) |
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| CMSModSpec_Base::CMSModSpec_Base (void) |
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virtual | CMSModSpec_Base::~CMSModSpec_Base (void) |
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| CMSModSpec_Base::DECLARE_INTERNAL_TYPE_INFO () |
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bool | CMSModSpec_Base::IsSetMod (void) const |
| what is the mod Check if a value has been assigned to Mod data member. More...
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bool | CMSModSpec_Base::CanGetMod (void) const |
| Check if it is safe to call GetMod method. More...
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void | CMSModSpec_Base::ResetMod (void) |
| Reset Mod data member. More...
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TMod | CMSModSpec_Base::GetMod (void) const |
| Get the Mod member data. More...
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void | CMSModSpec_Base::SetMod (TMod value) |
| Assign a value to Mod data member. More...
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TMod & | CMSModSpec_Base::SetMod (void) |
| Assign a value to Mod data member. More...
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bool | CMSModSpec_Base::IsSetType (void) const |
| modification type Check if a value has been assigned to Type data member. More...
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bool | CMSModSpec_Base::CanGetType (void) const |
| Check if it is safe to call GetType method. More...
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void | CMSModSpec_Base::ResetType (void) |
| Reset Type data member. More...
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TType | CMSModSpec_Base::GetType (void) const |
| Get the Type member data. More...
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void | CMSModSpec_Base::SetType (TType value) |
| Assign a value to Type data member. More...
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TType & | CMSModSpec_Base::SetType (void) |
| Assign a value to Type data member. More...
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bool | CMSModSpec_Base::IsSetName (void) const |
| friendly name of mod Check if a value has been assigned to Name data member. More...
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bool | CMSModSpec_Base::CanGetName (void) const |
| Check if it is safe to call GetName method. More...
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void | CMSModSpec_Base::ResetName (void) |
| Reset Name data member. More...
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const TName & | CMSModSpec_Base::GetName (void) const |
| Get the Name member data. More...
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void | CMSModSpec_Base::SetName (const TName &value) |
| Assign a value to Name data member. More...
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void | CMSModSpec_Base::SetName (TName &&value) |
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TName & | CMSModSpec_Base::SetName (void) |
| Assign a value to Name data member. More...
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bool | CMSModSpec_Base::IsSetMonomass (void) const |
| monoisotopic mass Check if a value has been assigned to Monomass data member. More...
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bool | CMSModSpec_Base::CanGetMonomass (void) const |
| Check if it is safe to call GetMonomass method. More...
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void | CMSModSpec_Base::ResetMonomass (void) |
| Reset Monomass data member. More...
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TMonomass | CMSModSpec_Base::GetMonomass (void) const |
| Get the Monomass member data. More...
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void | CMSModSpec_Base::SetMonomass (TMonomass value) |
| Assign a value to Monomass data member. More...
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TMonomass & | CMSModSpec_Base::SetMonomass (void) |
| Assign a value to Monomass data member. More...
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bool | CMSModSpec_Base::IsSetAveragemass (void) const |
| average mass Check if a value has been assigned to Averagemass data member. More...
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bool | CMSModSpec_Base::CanGetAveragemass (void) const |
| Check if it is safe to call GetAveragemass method. More...
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void | CMSModSpec_Base::ResetAveragemass (void) |
| Reset Averagemass data member. More...
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TAveragemass | CMSModSpec_Base::GetAveragemass (void) const |
| Get the Averagemass member data. More...
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void | CMSModSpec_Base::SetAveragemass (TAveragemass value) |
| Assign a value to Averagemass data member. More...
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TAveragemass & | CMSModSpec_Base::SetAveragemass (void) |
| Assign a value to Averagemass data member. More...
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bool | CMSModSpec_Base::IsSetN15mass (void) const |
| monoisotopic n15 mass Check if a value has been assigned to N15mass data member. More...
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bool | CMSModSpec_Base::CanGetN15mass (void) const |
| Check if it is safe to call GetN15mass method. More...
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void | CMSModSpec_Base::ResetN15mass (void) |
| Reset N15mass data member. More...
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TN15mass | CMSModSpec_Base::GetN15mass (void) const |
| Get the N15mass member data. More...
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void | CMSModSpec_Base::SetN15mass (TN15mass value) |
| Assign a value to N15mass data member. More...
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TN15mass & | CMSModSpec_Base::SetN15mass (void) |
| Assign a value to N15mass data member. More...
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bool | CMSModSpec_Base::IsSetResidues (void) const |
| residues to apply mod to Check if a value has been assigned to Residues data member. More...
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bool | CMSModSpec_Base::CanGetResidues (void) const |
| Check if it is safe to call GetResidues method. More...
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void | CMSModSpec_Base::ResetResidues (void) |
| Reset Residues data member. More...
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const TResidues & | CMSModSpec_Base::GetResidues (void) const |
| Get the Residues member data. More...
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TResidues & | CMSModSpec_Base::SetResidues (void) |
| Assign a value to Residues data member. More...
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bool | CMSModSpec_Base::IsSetNeutralloss (void) const |
| loss after precursor mass determination Check if a value has been assigned to Neutralloss data member. More...
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bool | CMSModSpec_Base::CanGetNeutralloss (void) const |
| Check if it is safe to call GetNeutralloss method. More...
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void | CMSModSpec_Base::ResetNeutralloss (void) |
| Reset Neutralloss data member. More...
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const TNeutralloss & | CMSModSpec_Base::GetNeutralloss (void) const |
| Get the Neutralloss member data. More...
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void | CMSModSpec_Base::SetNeutralloss (TNeutralloss &value) |
| Assign a value to Neutralloss data member. More...
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TNeutralloss & | CMSModSpec_Base::SetNeutralloss (void) |
| Assign a value to Neutralloss data member. More...
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bool | CMSModSpec_Base::IsSetUnimod (void) const |
| the equivalent Unimod Accession number Check if a value has been assigned to Unimod data member. More...
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bool | CMSModSpec_Base::CanGetUnimod (void) const |
| Check if it is safe to call GetUnimod method. More...
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void | CMSModSpec_Base::ResetUnimod (void) |
| Reset Unimod data member. More...
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TUnimod | CMSModSpec_Base::GetUnimod (void) const |
| Get the Unimod member data. More...
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void | CMSModSpec_Base::SetUnimod (TUnimod value) |
| Assign a value to Unimod data member. More...
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TUnimod & | CMSModSpec_Base::SetUnimod (void) |
| Assign a value to Unimod data member. More...
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bool | CMSModSpec_Base::IsSetPsi_ms (void) const |
| the PSI-MS equivalent name Check if a value has been assigned to Psi_ms data member. More...
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bool | CMSModSpec_Base::CanGetPsi_ms (void) const |
| Check if it is safe to call GetPsi_ms method. More...
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void | CMSModSpec_Base::ResetPsi_ms (void) |
| Reset Psi_ms data member. More...
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const TPsi_ms & | CMSModSpec_Base::GetPsi_ms (void) const |
| Get the Psi_ms member data. More...
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void | CMSModSpec_Base::SetPsi_ms (const TPsi_ms &value) |
| Assign a value to Psi_ms data member. More...
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void | CMSModSpec_Base::SetPsi_ms (TPsi_ms &&value) |
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TPsi_ms & | CMSModSpec_Base::SetPsi_ms (void) |
| Assign a value to Psi_ms data member. More...
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virtual void | CMSModSpec_Base::Reset (void) |
| Reset the whole object. More...
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| CMSModSpec_Base::CMSModSpec_Base (const CMSModSpec_Base &) |
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CMSModSpec_Base & | CMSModSpec_Base::operator= (const CMSModSpec_Base &) |
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| CMSModSpecSet_Base::CMSModSpecSet_Base (void) |
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virtual | CMSModSpecSet_Base::~CMSModSpecSet_Base (void) |
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| CMSModSpecSet_Base::DECLARE_INTERNAL_TYPE_INFO () |
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bool | CMSModSpecSet_Base::IsSet (void) const |
| Check if a value has been assigned to data member. More...
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bool | CMSModSpecSet_Base::CanGet (void) const |
| Check if it is safe to call Get method. More...
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void | CMSModSpecSet_Base::Reset (void) |
| Reset data member. More...
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const Tdata & | CMSModSpecSet_Base::Get (void) const |
| Get the member data. More...
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Tdata & | CMSModSpecSet_Base::Set (void) |
| Assign a value to data member. More...
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| CMSModSpecSet_Base::operator const Tdata & (void) const |
| Conversion operator to 'const Tdata' type. More...
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| CMSModSpecSet_Base::operator Tdata & (void) |
| Conversion operator to 'Tdata' type. More...
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| CMSModSpecSet_Base::CMSModSpecSet_Base (const CMSModSpecSet_Base &) |
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CMSModSpecSet_Base & | CMSModSpecSet_Base::operator= (const CMSModSpecSet_Base &) |
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| CMSMZHit::CMSMZHit (void) |
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| CMSMZHit::~CMSMZHit (void) |
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| CMSMZHit::CMSMZHit (const CMSMZHit &value) |
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CMSMZHit & | CMSMZHit::operator= (const CMSMZHit &value) |
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| CMSMZHit_Base::CMSMZHit_Base (void) |
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virtual | CMSMZHit_Base::~CMSMZHit_Base (void) |
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| CMSMZHit_Base::DECLARE_INTERNAL_TYPE_INFO () |
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bool | CMSMZHit_Base::IsSetIon (void) const |
| ion type, e.g. More...
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bool | CMSMZHit_Base::CanGetIon (void) const |
| Check if it is safe to call GetIon method. More...
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void | CMSMZHit_Base::ResetIon (void) |
| Reset Ion data member. More...
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TIon | CMSMZHit_Base::GetIon (void) const |
| Get the Ion member data. More...
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void | CMSMZHit_Base::SetIon (TIon value) |
| Assign a value to Ion data member. More...
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TIon & | CMSMZHit_Base::SetIon (void) |
| Assign a value to Ion data member. More...
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bool | CMSMZHit_Base::IsSetCharge (void) const |
| ion charge Check if a value has been assigned to Charge data member. More...
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bool | CMSMZHit_Base::CanGetCharge (void) const |
| Check if it is safe to call GetCharge method. More...
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void | CMSMZHit_Base::ResetCharge (void) |
| Reset Charge data member. More...
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TCharge | CMSMZHit_Base::GetCharge (void) const |
| Get the Charge member data. More...
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void | CMSMZHit_Base::SetCharge (TCharge value) |
| Assign a value to Charge data member. More...
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TCharge & | CMSMZHit_Base::SetCharge (void) |
| Assign a value to Charge data member. More...
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bool | CMSMZHit_Base::IsSetNumber (void) const |
| the sequential number of the ion Check if a value has been assigned to Number data member. More...
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bool | CMSMZHit_Base::CanGetNumber (void) const |
| Check if it is safe to call GetNumber method. More...
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void | CMSMZHit_Base::ResetNumber (void) |
| Reset Number data member. More...
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TNumber | CMSMZHit_Base::GetNumber (void) const |
| Get the Number member data. More...
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void | CMSMZHit_Base::SetNumber (TNumber value) |
| Assign a value to Number data member. More...
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TNumber & | CMSMZHit_Base::SetNumber (void) |
| Assign a value to Number data member. More...
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bool | CMSMZHit_Base::IsSetMz (void) const |
| scaled m/z value in Da Check if a value has been assigned to Mz data member. More...
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bool | CMSMZHit_Base::CanGetMz (void) const |
| Check if it is safe to call GetMz method. More...
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void | CMSMZHit_Base::ResetMz (void) |
| Reset Mz data member. More...
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TMz | CMSMZHit_Base::GetMz (void) const |
| Get the Mz member data. More...
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void | CMSMZHit_Base::SetMz (TMz value) |
| Assign a value to Mz data member. More...
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TMz & | CMSMZHit_Base::SetMz (void) |
| Assign a value to Mz data member. More...
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bool | CMSMZHit_Base::IsSetIndex (void) const |
| the index of the peak in the original spectrum Check if a value has been assigned to Index data member. More...
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bool | CMSMZHit_Base::CanGetIndex (void) const |
| Check if it is safe to call GetIndex method. More...
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void | CMSMZHit_Base::ResetIndex (void) |
| Reset Index data member. More...
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TIndex | CMSMZHit_Base::GetIndex (void) const |
| Get the Index member data. More...
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void | CMSMZHit_Base::SetIndex (TIndex value) |
| Assign a value to Index data member. More...
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TIndex & | CMSMZHit_Base::SetIndex (void) |
| Assign a value to Index data member. More...
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bool | CMSMZHit_Base::IsSetMoreion (void) const |
| more information about the ion type Check if a value has been assigned to Moreion data member. More...
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bool | CMSMZHit_Base::CanGetMoreion (void) const |
| Check if it is safe to call GetMoreion method. More...
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void | CMSMZHit_Base::ResetMoreion (void) |
| Reset Moreion data member. More...
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const TMoreion & | CMSMZHit_Base::GetMoreion (void) const |
| Get the Moreion member data. More...
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void | CMSMZHit_Base::SetMoreion (TMoreion &value) |
| Assign a value to Moreion data member. More...
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TMoreion & | CMSMZHit_Base::SetMoreion (void) |
| Assign a value to Moreion data member. More...
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bool | CMSMZHit_Base::IsSetAnnotation (void) const |
| annotations on the ion Check if a value has been assigned to Annotation data member. More...
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bool | CMSMZHit_Base::CanGetAnnotation (void) const |
| Check if it is safe to call GetAnnotation method. More...
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void | CMSMZHit_Base::ResetAnnotation (void) |
| Reset Annotation data member. More...
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const TAnnotation & | CMSMZHit_Base::GetAnnotation (void) const |
| Get the Annotation member data. More...
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void | CMSMZHit_Base::SetAnnotation (TAnnotation &value) |
| Assign a value to Annotation data member. More...
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TAnnotation & | CMSMZHit_Base::SetAnnotation (void) |
| Assign a value to Annotation data member. More...
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virtual void | CMSMZHit_Base::Reset (void) |
| Reset the whole object. More...
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| CMSMZHit_Base::CMSMZHit_Base (const CMSMZHit_Base &) |
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CMSMZHit_Base & | CMSMZHit_Base::operator= (const CMSMZHit_Base &) |
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| CMSOutFile::CMSOutFile (void) |
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| CMSOutFile::~CMSOutFile (void) |
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| CMSOutFile::CMSOutFile (const CMSOutFile &value) |
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CMSOutFile & | CMSOutFile::operator= (const CMSOutFile &value) |
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| CMSOutFile_Base::CMSOutFile_Base (void) |
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virtual | CMSOutFile_Base::~CMSOutFile_Base (void) |
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| CMSOutFile_Base::DECLARE_INTERNAL_TYPE_INFO () |
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bool | CMSOutFile_Base::IsSetOutfile (void) const |
| output file name Check if a value has been assigned to Outfile data member. More...
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bool | CMSOutFile_Base::CanGetOutfile (void) const |
| Check if it is safe to call GetOutfile method. More...
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void | CMSOutFile_Base::ResetOutfile (void) |
| Reset Outfile data member. More...
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const TOutfile & | CMSOutFile_Base::GetOutfile (void) const |
| Get the Outfile member data. More...
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void | CMSOutFile_Base::SetOutfile (const TOutfile &value) |
| Assign a value to Outfile data member. More...
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void | CMSOutFile_Base::SetOutfile (TOutfile &&value) |
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TOutfile & | CMSOutFile_Base::SetOutfile (void) |
| Assign a value to Outfile data member. More...
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bool | CMSOutFile_Base::IsSetOutfiletype (void) const |
| output file type Check if a value has been assigned to Outfiletype data member. More...
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bool | CMSOutFile_Base::CanGetOutfiletype (void) const |
| Check if it is safe to call GetOutfiletype method. More...
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void | CMSOutFile_Base::ResetOutfiletype (void) |
| Reset Outfiletype data member. More...
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TOutfiletype | CMSOutFile_Base::GetOutfiletype (void) const |
| Get the Outfiletype member data. More...
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void | CMSOutFile_Base::SetOutfiletype (TOutfiletype value) |
| Assign a value to Outfiletype data member. More...
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TOutfiletype & | CMSOutFile_Base::SetOutfiletype (void) |
| Assign a value to Outfiletype data member. More...
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bool | CMSOutFile_Base::IsSetIncluderequest (void) const |
| should the output include the request? Check if a value has been assigned to Includerequest data member. More...
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bool | CMSOutFile_Base::CanGetIncluderequest (void) const |
| Check if it is safe to call GetIncluderequest method. More...
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void | CMSOutFile_Base::ResetIncluderequest (void) |
| Reset Includerequest data member. More...
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TIncluderequest | CMSOutFile_Base::GetIncluderequest (void) const |
| Get the Includerequest member data. More...
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void | CMSOutFile_Base::SetIncluderequest (TIncluderequest value) |
| Assign a value to Includerequest data member. More...
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TIncluderequest & | CMSOutFile_Base::SetIncluderequest (void) |
| Assign a value to Includerequest data member. More...
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virtual void | CMSOutFile_Base::Reset (void) |
| Reset the whole object. More...
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| CMSOutFile_Base::CMSOutFile_Base (const CMSOutFile_Base &) |
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CMSOutFile_Base & | CMSOutFile_Base::operator= (const CMSOutFile_Base &) |
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| CMSPepHit::CMSPepHit (void) |
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| CMSPepHit::~CMSPepHit (void) |
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| CMSPepHit::CMSPepHit (const CMSPepHit &value) |
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CMSPepHit & | CMSPepHit::operator= (const CMSPepHit &value) |
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| CMSPepHit_Base::CMSPepHit_Base (void) |
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virtual | CMSPepHit_Base::~CMSPepHit_Base (void) |
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| CMSPepHit_Base::DECLARE_INTERNAL_TYPE_INFO () |
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bool | CMSPepHit_Base::IsSetStart (void) const |
| start position (inclusive) in sequence Check if a value has been assigned to Start data member. More...
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bool | CMSPepHit_Base::CanGetStart (void) const |
| Check if it is safe to call GetStart method. More...
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void | CMSPepHit_Base::ResetStart (void) |
| Reset Start data member. More...
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TStart | CMSPepHit_Base::GetStart (void) const |
| Get the Start member data. More...
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void | CMSPepHit_Base::SetStart (TStart value) |
| Assign a value to Start data member. More...
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TStart & | CMSPepHit_Base::SetStart (void) |
| Assign a value to Start data member. More...
|
|
bool | CMSPepHit_Base::IsSetStop (void) const |
| stop position (inclusive) in sequence Check if a value has been assigned to Stop data member. More...
|
|
bool | CMSPepHit_Base::CanGetStop (void) const |
| Check if it is safe to call GetStop method. More...
|
|
void | CMSPepHit_Base::ResetStop (void) |
| Reset Stop data member. More...
|
|
TStop | CMSPepHit_Base::GetStop (void) const |
| Get the Stop member data. More...
|
|
void | CMSPepHit_Base::SetStop (TStop value) |
| Assign a value to Stop data member. More...
|
|
TStop & | CMSPepHit_Base::SetStop (void) |
| Assign a value to Stop data member. More...
|
|
bool | CMSPepHit_Base::IsSetGi (void) const |
| genbank identifier Check if a value has been assigned to Gi data member. More...
|
|
bool | CMSPepHit_Base::CanGetGi (void) const |
| Check if it is safe to call GetGi method. More...
|
|
void | CMSPepHit_Base::ResetGi (void) |
| Reset Gi data member. More...
|
|
TGi | CMSPepHit_Base::GetGi (void) const |
| Get the Gi member data. More...
|
|
void | CMSPepHit_Base::SetGi (TGi value) |
| Assign a value to Gi data member. More...
|
|
TGi & | CMSPepHit_Base::SetGi (void) |
| Assign a value to Gi data member. More...
|
|
bool | CMSPepHit_Base::IsSetAccession (void) const |
| sequence accession Check if a value has been assigned to Accession data member. More...
|
|
bool | CMSPepHit_Base::CanGetAccession (void) const |
| Check if it is safe to call GetAccession method. More...
|
|
void | CMSPepHit_Base::ResetAccession (void) |
| Reset Accession data member. More...
|
|
const TAccession & | CMSPepHit_Base::GetAccession (void) const |
| Get the Accession member data. More...
|
|
void | CMSPepHit_Base::SetAccession (const TAccession &value) |
| Assign a value to Accession data member. More...
|
|
void | CMSPepHit_Base::SetAccession (TAccession &&value) |
|
TAccession & | CMSPepHit_Base::SetAccession (void) |
| Assign a value to Accession data member. More...
|
|
bool | CMSPepHit_Base::IsSetDefline (void) const |
| sequence description Check if a value has been assigned to Defline data member. More...
|
|
bool | CMSPepHit_Base::CanGetDefline (void) const |
| Check if it is safe to call GetDefline method. More...
|
|
void | CMSPepHit_Base::ResetDefline (void) |
| Reset Defline data member. More...
|
|
const TDefline & | CMSPepHit_Base::GetDefline (void) const |
| Get the Defline member data. More...
|
|
void | CMSPepHit_Base::SetDefline (const TDefline &value) |
| Assign a value to Defline data member. More...
|
|
void | CMSPepHit_Base::SetDefline (TDefline &&value) |
|
TDefline & | CMSPepHit_Base::SetDefline (void) |
| Assign a value to Defline data member. More...
|
|
bool | CMSPepHit_Base::IsSetProtlength (void) const |
| length of protein Check if a value has been assigned to Protlength data member. More...
|
|
bool | CMSPepHit_Base::CanGetProtlength (void) const |
| Check if it is safe to call GetProtlength method. More...
|
|
void | CMSPepHit_Base::ResetProtlength (void) |
| Reset Protlength data member. More...
|
|
TProtlength | CMSPepHit_Base::GetProtlength (void) const |
| Get the Protlength member data. More...
|
|
void | CMSPepHit_Base::SetProtlength (TProtlength value) |
| Assign a value to Protlength data member. More...
|
|
TProtlength & | CMSPepHit_Base::SetProtlength (void) |
| Assign a value to Protlength data member. More...
|
|
bool | CMSPepHit_Base::IsSetOid (void) const |
| blast library oid Check if a value has been assigned to Oid data member. More...
|
|
bool | CMSPepHit_Base::CanGetOid (void) const |
| Check if it is safe to call GetOid method. More...
|
|
void | CMSPepHit_Base::ResetOid (void) |
| Reset Oid data member. More...
|
|
TOid | CMSPepHit_Base::GetOid (void) const |
| Get the Oid member data. More...
|
|
void | CMSPepHit_Base::SetOid (TOid value) |
| Assign a value to Oid data member. More...
|
|
TOid & | CMSPepHit_Base::SetOid (void) |
| Assign a value to Oid data member. More...
|
|
bool | CMSPepHit_Base::IsSetReversed (void) const |
| reversed sequence Check if a value has been assigned to Reversed data member. More...
|
|
bool | CMSPepHit_Base::CanGetReversed (void) const |
| Check if it is safe to call GetReversed method. More...
|
|
void | CMSPepHit_Base::ResetReversed (void) |
| Reset Reversed data member. More...
|
|
TReversed | CMSPepHit_Base::GetReversed (void) const |
| Get the Reversed member data. More...
|
|
void | CMSPepHit_Base::SetReversed (TReversed value) |
| Assign a value to Reversed data member. More...
|
|
TReversed & | CMSPepHit_Base::SetReversed (void) |
| Assign a value to Reversed data member. More...
|
|
bool | CMSPepHit_Base::IsSetPepstart (void) const |
| AA before the peptide Check if a value has been assigned to Pepstart data member. More...
|
|
bool | CMSPepHit_Base::CanGetPepstart (void) const |
| Check if it is safe to call GetPepstart method. More...
|
|
void | CMSPepHit_Base::ResetPepstart (void) |
| Reset Pepstart data member. More...
|
|
const TPepstart & | CMSPepHit_Base::GetPepstart (void) const |
| Get the Pepstart member data. More...
|
|
void | CMSPepHit_Base::SetPepstart (const TPepstart &value) |
| Assign a value to Pepstart data member. More...
|
|
void | CMSPepHit_Base::SetPepstart (TPepstart &&value) |
|
TPepstart & | CMSPepHit_Base::SetPepstart (void) |
| Assign a value to Pepstart data member. More...
|
|
bool | CMSPepHit_Base::IsSetPepstop (void) const |
| AA after the peptide Check if a value has been assigned to Pepstop data member. More...
|
|
bool | CMSPepHit_Base::CanGetPepstop (void) const |
| Check if it is safe to call GetPepstop method. More...
|
|
void | CMSPepHit_Base::ResetPepstop (void) |
| Reset Pepstop data member. More...
|
|
const TPepstop & | CMSPepHit_Base::GetPepstop (void) const |
| Get the Pepstop member data. More...
|
|
void | CMSPepHit_Base::SetPepstop (const TPepstop &value) |
| Assign a value to Pepstop data member. More...
|
|
void | CMSPepHit_Base::SetPepstop (TPepstop &&value) |
|
TPepstop & | CMSPepHit_Base::SetPepstop (void) |
| Assign a value to Pepstop data member. More...
|
|
virtual void | CMSPepHit_Base::Reset (void) |
| Reset the whole object. More...
|
|
| CMSPepHit_Base::CMSPepHit_Base (const CMSPepHit_Base &) |
|
CMSPepHit_Base & | CMSPepHit_Base::operator= (const CMSPepHit_Base &) |
|
| CMSRequest_Base::CMSRequest_Base (void) |
|
virtual | CMSRequest_Base::~CMSRequest_Base (void) |
|
| CMSRequest_Base::DECLARE_INTERNAL_TYPE_INFO () |
|
bool | CMSRequest_Base::IsSetSpectra (void) const |
| the set of spectra Check if a value has been assigned to Spectra data member. More...
|
|
bool | CMSRequest_Base::CanGetSpectra (void) const |
| Check if it is safe to call GetSpectra method. More...
|
|
void | CMSRequest_Base::ResetSpectra (void) |
| Reset Spectra data member. More...
|
|
const TSpectra & | CMSRequest_Base::GetSpectra (void) const |
| Get the Spectra member data. More...
|
|
void | CMSRequest_Base::SetSpectra (TSpectra &value) |
| Assign a value to Spectra data member. More...
|
|
TSpectra & | CMSRequest_Base::SetSpectra (void) |
| Assign a value to Spectra data member. More...
|
|
bool | CMSRequest_Base::IsSetSettings (void) const |
| the search settings Check if a value has been assigned to Settings data member. More...
|
|
bool | CMSRequest_Base::CanGetSettings (void) const |
| Check if it is safe to call GetSettings method. More...
|
|
void | CMSRequest_Base::ResetSettings (void) |
| Reset Settings data member. More...
|
|
const TSettings & | CMSRequest_Base::GetSettings (void) const |
| Get the Settings member data. More...
|
|
void | CMSRequest_Base::SetSettings (TSettings &value) |
| Assign a value to Settings data member. More...
|
|
TSettings & | CMSRequest_Base::SetSettings (void) |
| Assign a value to Settings data member. More...
|
|
bool | CMSRequest_Base::IsSetRid (void) const |
| request id Check if a value has been assigned to Rid data member. More...
|
|
bool | CMSRequest_Base::CanGetRid (void) const |
| Check if it is safe to call GetRid method. More...
|
|
void | CMSRequest_Base::ResetRid (void) |
| Reset Rid data member. More...
|
|
const TRid & | CMSRequest_Base::GetRid (void) const |
| Get the Rid member data. More...
|
|
void | CMSRequest_Base::SetRid (const TRid &value) |
| Assign a value to Rid data member. More...
|
|
void | CMSRequest_Base::SetRid (TRid &&value) |
|
TRid & | CMSRequest_Base::SetRid (void) |
| Assign a value to Rid data member. More...
|
|
bool | CMSRequest_Base::IsSetMoresettings (void) const |
| additional search runs Check if a value has been assigned to Moresettings data member. More...
|
|
bool | CMSRequest_Base::CanGetMoresettings (void) const |
| Check if it is safe to call GetMoresettings method. More...
|
|
void | CMSRequest_Base::ResetMoresettings (void) |
| Reset Moresettings data member. More...
|
|
const TMoresettings & | CMSRequest_Base::GetMoresettings (void) const |
| Get the Moresettings member data. More...
|
|
void | CMSRequest_Base::SetMoresettings (TMoresettings &value) |
| Assign a value to Moresettings data member. More...
|
|
TMoresettings & | CMSRequest_Base::SetMoresettings (void) |
| Assign a value to Moresettings data member. More...
|
|
bool | CMSRequest_Base::IsSetModset (void) const |
| list of mods that can be used in search Check if a value has been assigned to Modset data member. More...
|
|
bool | CMSRequest_Base::CanGetModset (void) const |
| Check if it is safe to call GetModset method. More...
|
|
void | CMSRequest_Base::ResetModset (void) |
| Reset Modset data member. More...
|
|
const TModset & | CMSRequest_Base::GetModset (void) const |
| Get the Modset member data. More...
|
|
void | CMSRequest_Base::SetModset (TModset &value) |
| Assign a value to Modset data member. More...
|
|
TModset & | CMSRequest_Base::SetModset (void) |
| Assign a value to Modset data member. More...
|
|
virtual void | CMSRequest_Base::Reset (void) |
| Reset the whole object. More...
|
|
| CMSRequest_Base::CMSRequest_Base (const CMSRequest_Base &) |
|
CMSRequest_Base & | CMSRequest_Base::operator= (const CMSRequest_Base &) |
|
| CMSResponse_Base::CMSResponse_Base (void) |
|
virtual | CMSResponse_Base::~CMSResponse_Base (void) |
|
| CMSResponse_Base::DECLARE_INTERNAL_TYPE_INFO () |
|
bool | CMSResponse_Base::IsSetHitsets (void) const |
| hits grouped by spectrum Check if a value has been assigned to Hitsets data member. More...
|
|
bool | CMSResponse_Base::CanGetHitsets (void) const |
| Check if it is safe to call GetHitsets method. More...
|
|
void | CMSResponse_Base::ResetHitsets (void) |
| Reset Hitsets data member. More...
|
|
const THitsets & | CMSResponse_Base::GetHitsets (void) const |
| Get the Hitsets member data. More...
|
|
THitsets & | CMSResponse_Base::SetHitsets (void) |
| Assign a value to Hitsets data member. More...
|
|
bool | CMSResponse_Base::IsSetScale (void) const |
| scale to change m/z float to integer Check if a value has been assigned to Scale data member. More...
|
|
bool | CMSResponse_Base::CanGetScale (void) const |
| Check if it is safe to call GetScale method. More...
|
|
void | CMSResponse_Base::ResetScale (void) |
| Reset Scale data member. More...
|
|
void | CMSResponse_Base::SetDefaultScale (void) |
| Assign default value to Scale data member. More...
|
|
TScale | CMSResponse_Base::GetScale (void) const |
| Get the Scale member data. More...
|
|
void | CMSResponse_Base::SetScale (TScale value) |
| Assign a value to Scale data member. More...
|
|
TScale & | CMSResponse_Base::SetScale (void) |
| Assign a value to Scale data member. More...
|
|
bool | CMSResponse_Base::IsSetRid (void) const |
| request id Check if a value has been assigned to Rid data member. More...
|
|
bool | CMSResponse_Base::CanGetRid (void) const |
| Check if it is safe to call GetRid method. More...
|
|
void | CMSResponse_Base::ResetRid (void) |
| Reset Rid data member. More...
|
|
const TRid & | CMSResponse_Base::GetRid (void) const |
| Get the Rid member data. More...
|
|
void | CMSResponse_Base::SetRid (const TRid &value) |
| Assign a value to Rid data member. More...
|
|
void | CMSResponse_Base::SetRid (TRid &&value) |
|
TRid & | CMSResponse_Base::SetRid (void) |
| Assign a value to Rid data member. More...
|
|
bool | CMSResponse_Base::IsSetError (void) const |
| error response Check if a value has been assigned to Error data member. More...
|
|
bool | CMSResponse_Base::CanGetError (void) const |
| Check if it is safe to call GetError method. More...
|
|
void | CMSResponse_Base::ResetError (void) |
| Reset Error data member. More...
|
|
TError | CMSResponse_Base::GetError (void) const |
| Get the Error member data. More...
|
|
void | CMSResponse_Base::SetError (TError value) |
| Assign a value to Error data member. More...
|
|
TError & | CMSResponse_Base::SetError (void) |
| Assign a value to Error data member. More...
|
|
bool | CMSResponse_Base::IsSetVersion (void) const |
| version of OMSSA Check if a value has been assigned to Version data member. More...
|
|
bool | CMSResponse_Base::CanGetVersion (void) const |
| Check if it is safe to call GetVersion method. More...
|
|
void | CMSResponse_Base::ResetVersion (void) |
| Reset Version data member. More...
|
|
const TVersion & | CMSResponse_Base::GetVersion (void) const |
| Get the Version member data. More...
|
|
void | CMSResponse_Base::SetVersion (const TVersion &value) |
| Assign a value to Version data member. More...
|
|
void | CMSResponse_Base::SetVersion (TVersion &&value) |
|
TVersion & | CMSResponse_Base::SetVersion (void) |
| Assign a value to Version data member. More...
|
|
bool | CMSResponse_Base::IsSetEmail (void) const |
| email address for notification Check if a value has been assigned to Email data member. More...
|
|
bool | CMSResponse_Base::CanGetEmail (void) const |
| Check if it is safe to call GetEmail method. More...
|
|
void | CMSResponse_Base::ResetEmail (void) |
| Reset Email data member. More...
|
|
const TEmail & | CMSResponse_Base::GetEmail (void) const |
| Get the Email member data. More...
|
|
void | CMSResponse_Base::SetEmail (const TEmail &value) |
| Assign a value to Email data member. More...
|
|
void | CMSResponse_Base::SetEmail (TEmail &&value) |
|
TEmail & | CMSResponse_Base::SetEmail (void) |
| Assign a value to Email data member. More...
|
|
bool | CMSResponse_Base::IsSetDbversion (void) const |
| version of db searched (usually size) Check if a value has been assigned to Dbversion data member. More...
|
|
bool | CMSResponse_Base::CanGetDbversion (void) const |
| Check if it is safe to call GetDbversion method. More...
|
|
void | CMSResponse_Base::ResetDbversion (void) |
| Reset Dbversion data member. More...
|
|
TDbversion | CMSResponse_Base::GetDbversion (void) const |
| Get the Dbversion member data. More...
|
|
void | CMSResponse_Base::SetDbversion (TDbversion value) |
| Assign a value to Dbversion data member. More...
|
|
TDbversion & | CMSResponse_Base::SetDbversion (void) |
| Assign a value to Dbversion data member. More...
|
|
bool | CMSResponse_Base::IsSetBioseqs (void) const |
| sequences found in search Check if a value has been assigned to Bioseqs data member. More...
|
|
bool | CMSResponse_Base::CanGetBioseqs (void) const |
| Check if it is safe to call GetBioseqs method. More...
|
|
void | CMSResponse_Base::ResetBioseqs (void) |
| Reset Bioseqs data member. More...
|
|
const TBioseqs & | CMSResponse_Base::GetBioseqs (void) const |
| Get the Bioseqs member data. More...
|
|
void | CMSResponse_Base::SetBioseqs (TBioseqs &value) |
| Assign a value to Bioseqs data member. More...
|
|
TBioseqs & | CMSResponse_Base::SetBioseqs (void) |
| Assign a value to Bioseqs data member. More...
|
|
virtual void | CMSResponse_Base::Reset (void) |
| Reset the whole object. More...
|
|
| CMSResponse_Base::CMSResponse_Base (const CMSResponse_Base &) |
|
CMSResponse_Base & | CMSResponse_Base::operator= (const CMSResponse_Base &) |
|
| CMSScoreSet::CMSScoreSet (void) |
|
| CMSScoreSet::~CMSScoreSet (void) |
|
| CMSScoreSet::CMSScoreSet (const CMSScoreSet &value) |
|
CMSScoreSet & | CMSScoreSet::operator= (const CMSScoreSet &value) |
|
| CMSScoreSet_Base::CMSScoreSet_Base (void) |
|
virtual | CMSScoreSet_Base::~CMSScoreSet_Base (void) |
|
| CMSScoreSet_Base::DECLARE_INTERNAL_TYPE_INFO () |
|
bool | CMSScoreSet_Base::IsSetName (void) const |
| Check if a value has been assigned to Name data member. More...
|
|
bool | CMSScoreSet_Base::CanGetName (void) const |
| Check if it is safe to call GetName method. More...
|
|
void | CMSScoreSet_Base::ResetName (void) |
| Reset Name data member. More...
|
|
const TName & | CMSScoreSet_Base::GetName (void) const |
| Get the Name member data. More...
|
|
void | CMSScoreSet_Base::SetName (const TName &value) |
| Assign a value to Name data member. More...
|
|
void | CMSScoreSet_Base::SetName (TName &&value) |
|
TName & | CMSScoreSet_Base::SetName (void) |
| Assign a value to Name data member. More...
|
|
bool | CMSScoreSet_Base::IsSetValue (void) const |
| Check if a value has been assigned to Value data member. More...
|
|
bool | CMSScoreSet_Base::CanGetValue (void) const |
| Check if it is safe to call GetValue method. More...
|
|
void | CMSScoreSet_Base::ResetValue (void) |
| Reset Value data member. More...
|
|
TValue | CMSScoreSet_Base::GetValue (void) const |
| Get the Value member data. More...
|
|
void | CMSScoreSet_Base::SetValue (TValue value) |
| Assign a value to Value data member. More...
|
|
TValue & | CMSScoreSet_Base::SetValue (void) |
| Assign a value to Value data member. More...
|
|
virtual void | CMSScoreSet_Base::Reset (void) |
| Reset the whole object. More...
|
|
| CMSScoreSet_Base::CMSScoreSet_Base (const CMSScoreSet_Base &) |
|
CMSScoreSet_Base & | CMSScoreSet_Base::operator= (const CMSScoreSet_Base &) |
|
| CMSSearch_Base::CMSSearch_Base (void) |
|
virtual | CMSSearch_Base::~CMSSearch_Base (void) |
|
| CMSSearch_Base::DECLARE_INTERNAL_TYPE_INFO () |
|
bool | CMSSearch_Base::IsSetRequest (void) const |
| Check if a value has been assigned to Request data member. More...
|
|
bool | CMSSearch_Base::CanGetRequest (void) const |
| Check if it is safe to call GetRequest method. More...
|
|
void | CMSSearch_Base::ResetRequest (void) |
| Reset Request data member. More...
|
|
const TRequest & | CMSSearch_Base::GetRequest (void) const |
| Get the Request member data. More...
|
|
TRequest & | CMSSearch_Base::SetRequest (void) |
| Assign a value to Request data member. More...
|
|
bool | CMSSearch_Base::IsSetResponse (void) const |
| Check if a value has been assigned to Response data member. More...
|
|
bool | CMSSearch_Base::CanGetResponse (void) const |
| Check if it is safe to call GetResponse method. More...
|
|
void | CMSSearch_Base::ResetResponse (void) |
| Reset Response data member. More...
|
|
const TResponse & | CMSSearch_Base::GetResponse (void) const |
| Get the Response member data. More...
|
|
TResponse & | CMSSearch_Base::SetResponse (void) |
| Assign a value to Response data member. More...
|
|
virtual void | CMSSearch_Base::Reset (void) |
| Reset the whole object. More...
|
|
| CMSSearch_Base::CMSSearch_Base (const CMSSearch_Base &) |
|
CMSSearch_Base & | CMSSearch_Base::operator= (const CMSSearch_Base &) |
|
| CMSSearchSettings_Base::CMSSearchSettings_Base (void) |
|
virtual | CMSSearchSettings_Base::~CMSSearchSettings_Base (void) |
|
| CMSSearchSettings_Base::DECLARE_INTERNAL_TYPE_INFO () |
|
bool | CMSSearchSettings_Base::IsSetPrecursorsearchtype (void) const |
| average or monoisotopic? Check if a value has been assigned to Precursorsearchtype data member. More...
|
|
bool | CMSSearchSettings_Base::CanGetPrecursorsearchtype (void) const |
| Check if it is safe to call GetPrecursorsearchtype method. More...
|
|
void | CMSSearchSettings_Base::ResetPrecursorsearchtype (void) |
| Reset Precursorsearchtype data member. More...
|
|
TPrecursorsearchtype | CMSSearchSettings_Base::GetPrecursorsearchtype (void) const |
| Get the Precursorsearchtype member data. More...
|
|
void | CMSSearchSettings_Base::SetPrecursorsearchtype (TPrecursorsearchtype value) |
| Assign a value to Precursorsearchtype data member. More...
|
|
TPrecursorsearchtype & | CMSSearchSettings_Base::SetPrecursorsearchtype (void) |
| Assign a value to Precursorsearchtype data member. More...
|
|
bool | CMSSearchSettings_Base::IsSetProductsearchtype (void) const |
| average or monoisotopic? Check if a value has been assigned to Productsearchtype data member. More...
|
|
bool | CMSSearchSettings_Base::CanGetProductsearchtype (void) const |
| Check if it is safe to call GetProductsearchtype method. More...
|
|
void | CMSSearchSettings_Base::ResetProductsearchtype (void) |
| Reset Productsearchtype data member. More...
|
|
TProductsearchtype | CMSSearchSettings_Base::GetProductsearchtype (void) const |
| Get the Productsearchtype member data. More...
|
|
void | CMSSearchSettings_Base::SetProductsearchtype (TProductsearchtype value) |
| Assign a value to Productsearchtype data member. More...
|
|
TProductsearchtype & | CMSSearchSettings_Base::SetProductsearchtype (void) |
| Assign a value to Productsearchtype data member. More...
|
|
bool | CMSSearchSettings_Base::IsSetIonstosearch (void) const |
| which ions to search? Check if a value has been assigned to Ionstosearch data member. More...
|
|
bool | CMSSearchSettings_Base::CanGetIonstosearch (void) const |
| Check if it is safe to call GetIonstosearch method. More...
|
|
void | CMSSearchSettings_Base::ResetIonstosearch (void) |
| Reset Ionstosearch data member. More...
|
|
const TIonstosearch & | CMSSearchSettings_Base::GetIonstosearch (void) const |
| Get the Ionstosearch member data. More...
|
|
TIonstosearch & | CMSSearchSettings_Base::SetIonstosearch (void) |
| Assign a value to Ionstosearch data member. More...
|
|
bool | CMSSearchSettings_Base::IsSetPeptol (void) const |
| peptide mass tolerance Check if a value has been assigned to Peptol data member. More...
|
|
bool | CMSSearchSettings_Base::CanGetPeptol (void) const |
| Check if it is safe to call GetPeptol method. More...
|
|
void | CMSSearchSettings_Base::ResetPeptol (void) |
| Reset Peptol data member. More...
|
|
TPeptol | CMSSearchSettings_Base::GetPeptol (void) const |
| Get the Peptol member data. More...
|
|
void | CMSSearchSettings_Base::SetPeptol (TPeptol value) |
| Assign a value to Peptol data member. More...
|
|
TPeptol & | CMSSearchSettings_Base::SetPeptol (void) |
| Assign a value to Peptol data member. More...
|
|
bool | CMSSearchSettings_Base::IsSetMsmstol (void) const |
| msms mass tolerance Check if a value has been assigned to Msmstol data member. More...
|
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bool | CMSSearchSettings_Base::CanGetMsmstol (void) const |
| Check if it is safe to call GetMsmstol method. More...
|
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void | CMSSearchSettings_Base::ResetMsmstol (void) |
| Reset Msmstol data member. More...
|
|
TMsmstol | CMSSearchSettings_Base::GetMsmstol (void) const |
| Get the Msmstol member data. More...
|
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void | CMSSearchSettings_Base::SetMsmstol (TMsmstol value) |
| Assign a value to Msmstol data member. More...
|
|
TMsmstol & | CMSSearchSettings_Base::SetMsmstol (void) |
| Assign a value to Msmstol data member. More...
|
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bool | CMSSearchSettings_Base::IsSetZdep (void) const |
| what is the charge dependence of the mass tolerance? Check if a value has been assigned to Zdep data member. More...
|
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bool | CMSSearchSettings_Base::CanGetZdep (void) const |
| Check if it is safe to call GetZdep method. More...
|
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void | CMSSearchSettings_Base::ResetZdep (void) |
| Reset Zdep data member. More...
|
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TZdep | CMSSearchSettings_Base::GetZdep (void) const |
| Get the Zdep member data. More...
|
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void | CMSSearchSettings_Base::SetZdep (TZdep value) |
| Assign a value to Zdep data member. More...
|
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TZdep & | CMSSearchSettings_Base::SetZdep (void) |
| Assign a value to Zdep data member. More...
|
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bool | CMSSearchSettings_Base::IsSetCutoff (void) const |
| evalue cutoff next 3 fields define intensity fraction below which peaks will be discard Check if a value has been assigned to Cutoff data member. More...
|
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bool | CMSSearchSettings_Base::CanGetCutoff (void) const |
| Check if it is safe to call GetCutoff method. More...
|
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void | CMSSearchSettings_Base::ResetCutoff (void) |
| Reset Cutoff data member. More...
|
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TCutoff | CMSSearchSettings_Base::GetCutoff (void) const |
| Get the Cutoff member data. More...
|
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void | CMSSearchSettings_Base::SetCutoff (TCutoff value) |
| Assign a value to Cutoff data member. More...
|
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TCutoff & | CMSSearchSettings_Base::SetCutoff (void) |
| Assign a value to Cutoff data member. More...
|
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bool | CMSSearchSettings_Base::IsSetCutlo (void) const |
| the start of the cutoff, fraction of most intense peak Check if a value has been assigned to Cutlo data member. More...
|
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bool | CMSSearchSettings_Base::CanGetCutlo (void) const |
| Check if it is safe to call GetCutlo method. More...
|
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void | CMSSearchSettings_Base::ResetCutlo (void) |
| Reset Cutlo data member. More...
|
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TCutlo | CMSSearchSettings_Base::GetCutlo (void) const |
| Get the Cutlo member data. More...
|
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void | CMSSearchSettings_Base::SetCutlo (TCutlo value) |
| Assign a value to Cutlo data member. More...
|
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TCutlo & | CMSSearchSettings_Base::SetCutlo (void) |
| Assign a value to Cutlo data member. More...
|
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bool | CMSSearchSettings_Base::IsSetCuthi (void) const |
| the end of the cutoff Check if a value has been assigned to Cuthi data member. More...
|
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bool | CMSSearchSettings_Base::CanGetCuthi (void) const |
| Check if it is safe to call GetCuthi method. More...
|
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void | CMSSearchSettings_Base::ResetCuthi (void) |
| Reset Cuthi data member. More...
|
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TCuthi | CMSSearchSettings_Base::GetCuthi (void) const |
| Get the Cuthi member data. More...
|
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void | CMSSearchSettings_Base::SetCuthi (TCuthi value) |
| Assign a value to Cuthi data member. More...
|
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TCuthi & | CMSSearchSettings_Base::SetCuthi (void) |
| Assign a value to Cuthi data member. More...
|
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bool | CMSSearchSettings_Base::IsSetCutinc (void) const |
| the increment of the cutoff Check if a value has been assigned to Cutinc data member. More...
|
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bool | CMSSearchSettings_Base::CanGetCutinc (void) const |
| Check if it is safe to call GetCutinc method. More...
|
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void | CMSSearchSettings_Base::ResetCutinc (void) |
| Reset Cutinc data member. More...
|
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TCutinc | CMSSearchSettings_Base::GetCutinc (void) const |
| Get the Cutinc member data. More...
|
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void | CMSSearchSettings_Base::SetCutinc (TCutinc value) |
| Assign a value to Cutinc data member. More...
|
|
TCutinc & | CMSSearchSettings_Base::SetCutinc (void) |
| Assign a value to Cutinc data member. More...
|
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bool | CMSSearchSettings_Base::IsSetSinglewin (void) const |
| the size of the single charge filtering window Check if a value has been assigned to Singlewin data member. More...
|
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bool | CMSSearchSettings_Base::CanGetSinglewin (void) const |
| Check if it is safe to call GetSinglewin method. More...
|
|
void | CMSSearchSettings_Base::ResetSinglewin (void) |
| Reset Singlewin data member. More...
|
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TSinglewin | CMSSearchSettings_Base::GetSinglewin (void) const |
| Get the Singlewin member data. More...
|
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void | CMSSearchSettings_Base::SetSinglewin (TSinglewin value) |
| Assign a value to Singlewin data member. More...
|
|
TSinglewin & | CMSSearchSettings_Base::SetSinglewin (void) |
| Assign a value to Singlewin data member. More...
|
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bool | CMSSearchSettings_Base::IsSetDoublewin (void) const |
| the size of the double charge filtering window Check if a value has been assigned to Doublewin data member. More...
|
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bool | CMSSearchSettings_Base::CanGetDoublewin (void) const |
| Check if it is safe to call GetDoublewin method. More...
|
|
void | CMSSearchSettings_Base::ResetDoublewin (void) |
| Reset Doublewin data member. More...
|
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TDoublewin | CMSSearchSettings_Base::GetDoublewin (void) const |
| Get the Doublewin member data. More...
|
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void | CMSSearchSettings_Base::SetDoublewin (TDoublewin value) |
| Assign a value to Doublewin data member. More...
|
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TDoublewin & | CMSSearchSettings_Base::SetDoublewin (void) |
| Assign a value to Doublewin data member. More...
|
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bool | CMSSearchSettings_Base::IsSetSinglenum (void) const |
| the number of peaks allowed in the single window Check if a value has been assigned to Singlenum data member. More...
|
|
bool | CMSSearchSettings_Base::CanGetSinglenum (void) const |
| Check if it is safe to call GetSinglenum method. More...
|
|
void | CMSSearchSettings_Base::ResetSinglenum (void) |
| Reset Singlenum data member. More...
|
|
TSinglenum | CMSSearchSettings_Base::GetSinglenum (void) const |
| Get the Singlenum member data. More...
|
|
void | CMSSearchSettings_Base::SetSinglenum (TSinglenum value) |
| Assign a value to Singlenum data member. More...
|
|
TSinglenum & | CMSSearchSettings_Base::SetSinglenum (void) |
| Assign a value to Singlenum data member. More...
|
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bool | CMSSearchSettings_Base::IsSetDoublenum (void) const |
| the number of peaks allowed in the double window Check if a value has been assigned to Doublenum data member. More...
|
|
bool | CMSSearchSettings_Base::CanGetDoublenum (void) const |
| Check if it is safe to call GetDoublenum method. More...
|
|
void | CMSSearchSettings_Base::ResetDoublenum (void) |
| Reset Doublenum data member. More...
|
|
TDoublenum | CMSSearchSettings_Base::GetDoublenum (void) const |
| Get the Doublenum member data. More...
|
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void | CMSSearchSettings_Base::SetDoublenum (TDoublenum value) |
| Assign a value to Doublenum data member. More...
|
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TDoublenum & | CMSSearchSettings_Base::SetDoublenum (void) |
| Assign a value to Doublenum data member. More...
|
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bool | CMSSearchSettings_Base::IsSetFixed (void) const |
| fixed PTM's Check if a value has been assigned to Fixed data member. More...
|
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bool | CMSSearchSettings_Base::CanGetFixed (void) const |
| Check if it is safe to call GetFixed method. More...
|
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void | CMSSearchSettings_Base::ResetFixed (void) |
| Reset Fixed data member. More...
|
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const TFixed & | CMSSearchSettings_Base::GetFixed (void) const |
| Get the Fixed member data. More...
|
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TFixed & | CMSSearchSettings_Base::SetFixed (void) |
| Assign a value to Fixed data member. More...
|
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bool | CMSSearchSettings_Base::IsSetVariable (void) const |
| variable PTM's Check if a value has been assigned to Variable data member. More...
|
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bool | CMSSearchSettings_Base::CanGetVariable (void) const |
| Check if it is safe to call GetVariable method. More...
|
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void | CMSSearchSettings_Base::ResetVariable (void) |
| Reset Variable data member. More...
|
|
const TVariable & | CMSSearchSettings_Base::GetVariable (void) const |
| Get the Variable member data. More...
|
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TVariable & | CMSSearchSettings_Base::SetVariable (void) |
| Assign a value to Variable data member. More...
|
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bool | CMSSearchSettings_Base::IsSetEnzyme (void) const |
| digestion enzyme Check if a value has been assigned to Enzyme data member. More...
|
|
bool | CMSSearchSettings_Base::CanGetEnzyme (void) const |
| Check if it is safe to call GetEnzyme method. More...
|
|
void | CMSSearchSettings_Base::ResetEnzyme (void) |
| Reset Enzyme data member. More...
|
|
TEnzyme | CMSSearchSettings_Base::GetEnzyme (void) const |
| Get the Enzyme member data. More...
|
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void | CMSSearchSettings_Base::SetEnzyme (TEnzyme value) |
| Assign a value to Enzyme data member. More...
|
|
TEnzyme & | CMSSearchSettings_Base::SetEnzyme (void) |
| Assign a value to Enzyme data member. More...
|
|
bool | CMSSearchSettings_Base::IsSetMissedcleave (void) const |
| number of missed cleaves allowed Check if a value has been assigned to Missedcleave data member. More...
|
|
bool | CMSSearchSettings_Base::CanGetMissedcleave (void) const |
| Check if it is safe to call GetMissedcleave method. More...
|
|
void | CMSSearchSettings_Base::ResetMissedcleave (void) |
| Reset Missedcleave data member. More...
|
|
TMissedcleave | CMSSearchSettings_Base::GetMissedcleave (void) const |
| Get the Missedcleave member data. More...
|
|
void | CMSSearchSettings_Base::SetMissedcleave (TMissedcleave value) |
| Assign a value to Missedcleave data member. More...
|
|
TMissedcleave & | CMSSearchSettings_Base::SetMissedcleave (void) |
| Assign a value to Missedcleave data member. More...
|
|
bool | CMSSearchSettings_Base::IsSetHitlistlen (void) const |
| the number of hits kept in memory for a spectrum Check if a value has been assigned to Hitlistlen data member. More...
|
|
bool | CMSSearchSettings_Base::CanGetHitlistlen (void) const |
| Check if it is safe to call GetHitlistlen method. More...
|
|
void | CMSSearchSettings_Base::ResetHitlistlen (void) |
| Reset Hitlistlen data member. More...
|
|
void | CMSSearchSettings_Base::SetDefaultHitlistlen (void) |
| Assign default value to Hitlistlen data member. More...
|
|
THitlistlen | CMSSearchSettings_Base::GetHitlistlen (void) const |
| Get the Hitlistlen member data. More...
|
|
void | CMSSearchSettings_Base::SetHitlistlen (THitlistlen value) |
| Assign a value to Hitlistlen data member. More...
|
|
THitlistlen & | CMSSearchSettings_Base::SetHitlistlen (void) |
| Assign a value to Hitlistlen data member. More...
|
|
bool | CMSSearchSettings_Base::IsSetDb (void) const |
| sequence set to search, e.g. More...
|
|
bool | CMSSearchSettings_Base::CanGetDb (void) const |
| Check if it is safe to call GetDb method. More...
|
|
void | CMSSearchSettings_Base::ResetDb (void) |
| Reset Db data member. More...
|
|
const TDb & | CMSSearchSettings_Base::GetDb (void) const |
| Get the Db member data. More...
|
|
void | CMSSearchSettings_Base::SetDb (const TDb &value) |
| Assign a value to Db data member. More...
|
|
void | CMSSearchSettings_Base::SetDb (TDb &&value) |
|
TDb & | CMSSearchSettings_Base::SetDb (void) |
| Assign a value to Db data member. More...
|
|
bool | CMSSearchSettings_Base::IsSetTophitnum (void) const |
| number of m/z to consider in first pass Check if a value has been assigned to Tophitnum data member. More...
|
|
bool | CMSSearchSettings_Base::CanGetTophitnum (void) const |
| Check if it is safe to call GetTophitnum method. More...
|
|
void | CMSSearchSettings_Base::ResetTophitnum (void) |
| Reset Tophitnum data member. More...
|
|
TTophitnum | CMSSearchSettings_Base::GetTophitnum (void) const |
| Get the Tophitnum member data. More...
|
|
void | CMSSearchSettings_Base::SetTophitnum (TTophitnum value) |
| Assign a value to Tophitnum data member. More...
|
|
TTophitnum & | CMSSearchSettings_Base::SetTophitnum (void) |
| Assign a value to Tophitnum data member. More...
|
|
bool | CMSSearchSettings_Base::IsSetMinhit (void) const |
| minimum number of m/z values for a valid hit Check if a value has been assigned to Minhit data member. More...
|
|
bool | CMSSearchSettings_Base::CanGetMinhit (void) const |
| Check if it is safe to call GetMinhit method. More...
|
|
void | CMSSearchSettings_Base::ResetMinhit (void) |
| Reset Minhit data member. More...
|
|
void | CMSSearchSettings_Base::SetDefaultMinhit (void) |
| Assign default value to Minhit data member. More...
|
|
TMinhit | CMSSearchSettings_Base::GetMinhit (void) const |
| Get the Minhit member data. More...
|
|
void | CMSSearchSettings_Base::SetMinhit (TMinhit value) |
| Assign a value to Minhit data member. More...
|
|
TMinhit & | CMSSearchSettings_Base::SetMinhit (void) |
| Assign a value to Minhit data member. More...
|
|
bool | CMSSearchSettings_Base::IsSetMinspectra (void) const |
| minimum number of m/z for a valid spectra Check if a value has been assigned to Minspectra data member. More...
|
|
bool | CMSSearchSettings_Base::CanGetMinspectra (void) const |
| Check if it is safe to call GetMinspectra method. More...
|
|
void | CMSSearchSettings_Base::ResetMinspectra (void) |
| Reset Minspectra data member. More...
|
|
void | CMSSearchSettings_Base::SetDefaultMinspectra (void) |
| Assign default value to Minspectra data member. More...
|
|
TMinspectra | CMSSearchSettings_Base::GetMinspectra (void) const |
| Get the Minspectra member data. More...
|
|
void | CMSSearchSettings_Base::SetMinspectra (TMinspectra value) |
| Assign a value to Minspectra data member. More...
|
|
TMinspectra & | CMSSearchSettings_Base::SetMinspectra (void) |
| Assign a value to Minspectra data member. More...
|
|
bool | CMSSearchSettings_Base::IsSetScale (void) const |
| scale for m/z float to integer Check if a value has been assigned to Scale data member. More...
|
|
bool | CMSSearchSettings_Base::CanGetScale (void) const |
| Check if it is safe to call GetScale method. More...
|
|
void | CMSSearchSettings_Base::ResetScale (void) |
| Reset Scale data member. More...
|
|
void | CMSSearchSettings_Base::SetDefaultScale (void) |
| Assign default value to Scale data member. More...
|
|
TScale | CMSSearchSettings_Base::GetScale (void) const |
| Get the Scale member data. More...
|
|
void | CMSSearchSettings_Base::SetScale (TScale value) |
| Assign a value to Scale data member. More...
|
|
TScale & | CMSSearchSettings_Base::SetScale (void) |
| Assign a value to Scale data member. More...
|
|
bool | CMSSearchSettings_Base::IsSetMaxmods (void) const |
| maximum number of mass ladders per database peptide Check if a value has been assigned to Maxmods data member. More...
|
|
bool | CMSSearchSettings_Base::CanGetMaxmods (void) const |
| Check if it is safe to call GetMaxmods method. More...
|
|
void | CMSSearchSettings_Base::ResetMaxmods (void) |
| Reset Maxmods data member. More...
|
|
void | CMSSearchSettings_Base::SetDefaultMaxmods (void) |
| Assign default value to Maxmods data member. More...
|
|
TMaxmods | CMSSearchSettings_Base::GetMaxmods (void) const |
| Get the Maxmods member data. More...
|
|
void | CMSSearchSettings_Base::SetMaxmods (TMaxmods value) |
| Assign a value to Maxmods data member. More...
|
|
TMaxmods & | CMSSearchSettings_Base::SetMaxmods (void) |
| Assign a value to Maxmods data member. More...
|
|
bool | CMSSearchSettings_Base::IsSetTaxids (void) const |
| taxa to limit search Check if a value has been assigned to Taxids data member. More...
|
|
bool | CMSSearchSettings_Base::CanGetTaxids (void) const |
| Check if it is safe to call GetTaxids method. More...
|
|
void | CMSSearchSettings_Base::ResetTaxids (void) |
| Reset Taxids data member. More...
|
|
const TTaxids & | CMSSearchSettings_Base::GetTaxids (void) const |
| Get the Taxids member data. More...
|
|
TTaxids & | CMSSearchSettings_Base::SetTaxids (void) |
| Assign a value to Taxids data member. More...
|
|
bool | CMSSearchSettings_Base::IsSetChargehandling (void) const |
| how to deal with charges Check if a value has been assigned to Chargehandling data member. More...
|
|
bool | CMSSearchSettings_Base::CanGetChargehandling (void) const |
| Check if it is safe to call GetChargehandling method. More...
|
|
void | CMSSearchSettings_Base::ResetChargehandling (void) |
| Reset Chargehandling data member. More...
|
|
const TChargehandling & | CMSSearchSettings_Base::GetChargehandling (void) const |
| Get the Chargehandling member data. More...
|
|
void | CMSSearchSettings_Base::SetChargehandling (TChargehandling &value) |
| Assign a value to Chargehandling data member. More...
|
|
TChargehandling & | CMSSearchSettings_Base::SetChargehandling (void) |
| Assign a value to Chargehandling data member. More...
|
|
bool | CMSSearchSettings_Base::IsSetUsermods (void) const |
| user defined modifications Check if a value has been assigned to Usermods data member. More...
|
|
bool | CMSSearchSettings_Base::CanGetUsermods (void) const |
| Check if it is safe to call GetUsermods method. More...
|
|
void | CMSSearchSettings_Base::ResetUsermods (void) |
| Reset Usermods data member. More...
|
|
const TUsermods & | CMSSearchSettings_Base::GetUsermods (void) const |
| Get the Usermods member data. More...
|
|
void | CMSSearchSettings_Base::SetUsermods (TUsermods &value) |
| Assign a value to Usermods data member. More...
|
|
TUsermods & | CMSSearchSettings_Base::SetUsermods (void) |
| Assign a value to Usermods data member. More...
|
|
bool | CMSSearchSettings_Base::IsSetPseudocount (void) const |
| min number of counts per precursor bin Check if a value has been assigned to Pseudocount data member. More...
|
|
bool | CMSSearchSettings_Base::CanGetPseudocount (void) const |
| Check if it is safe to call GetPseudocount method. More...
|
|
void | CMSSearchSettings_Base::ResetPseudocount (void) |
| Reset Pseudocount data member. More...
|
|
void | CMSSearchSettings_Base::SetDefaultPseudocount (void) |
| Assign default value to Pseudocount data member. More...
|
|
TPseudocount | CMSSearchSettings_Base::GetPseudocount (void) const |
| Get the Pseudocount member data. More...
|
|
void | CMSSearchSettings_Base::SetPseudocount (TPseudocount value) |
| Assign a value to Pseudocount data member. More...
|
|
TPseudocount & | CMSSearchSettings_Base::SetPseudocount (void) |
| Assign a value to Pseudocount data member. More...
|
|
bool | CMSSearchSettings_Base::IsSetSearchb1 (void) const |
| should b1 product be in search (1=no, 0=yes) Check if a value has been assigned to Searchb1 data member. More...
|
|
bool | CMSSearchSettings_Base::CanGetSearchb1 (void) const |
| Check if it is safe to call GetSearchb1 method. More...
|
|
void | CMSSearchSettings_Base::ResetSearchb1 (void) |
| Reset Searchb1 data member. More...
|
|
void | CMSSearchSettings_Base::SetDefaultSearchb1 (void) |
| Assign default value to Searchb1 data member. More...
|
|
TSearchb1 | CMSSearchSettings_Base::GetSearchb1 (void) const |
| Get the Searchb1 member data. More...
|
|
void | CMSSearchSettings_Base::SetSearchb1 (TSearchb1 value) |
| Assign a value to Searchb1 data member. More...
|
|
TSearchb1 & | CMSSearchSettings_Base::SetSearchb1 (void) |
| Assign a value to Searchb1 data member. More...
|
|
bool | CMSSearchSettings_Base::IsSetSearchctermproduct (void) const |
| should c terminus ion be searched (1=no, 0=yes) Check if a value has been assigned to Searchctermproduct data member. More...
|
|
bool | CMSSearchSettings_Base::CanGetSearchctermproduct (void) const |
| Check if it is safe to call GetSearchctermproduct method. More...
|
|
void | CMSSearchSettings_Base::ResetSearchctermproduct (void) |
| Reset Searchctermproduct data member. More...
|
|
void | CMSSearchSettings_Base::SetDefaultSearchctermproduct (void) |
| Assign default value to Searchctermproduct data member. More...
|
|
TSearchctermproduct | CMSSearchSettings_Base::GetSearchctermproduct (void) const |
| Get the Searchctermproduct member data. More...
|
|
void | CMSSearchSettings_Base::SetSearchctermproduct (TSearchctermproduct value) |
| Assign a value to Searchctermproduct data member. More...
|
|
TSearchctermproduct & | CMSSearchSettings_Base::SetSearchctermproduct (void) |
| Assign a value to Searchctermproduct data member. More...
|
|
bool | CMSSearchSettings_Base::IsSetMaxproductions (void) const |
| max number of ions in each series (0=all) Check if a value has been assigned to Maxproductions data member. More...
|
|
bool | CMSSearchSettings_Base::CanGetMaxproductions (void) const |
| Check if it is safe to call GetMaxproductions method. More...
|
|
void | CMSSearchSettings_Base::ResetMaxproductions (void) |
| Reset Maxproductions data member. More...
|
|
void | CMSSearchSettings_Base::SetDefaultMaxproductions (void) |
| Assign default value to Maxproductions data member. More...
|
|
TMaxproductions | CMSSearchSettings_Base::GetMaxproductions (void) const |
| Get the Maxproductions member data. More...
|
|
void | CMSSearchSettings_Base::SetMaxproductions (TMaxproductions value) |
| Assign a value to Maxproductions data member. More...
|
|
TMaxproductions & | CMSSearchSettings_Base::SetMaxproductions (void) |
| Assign a value to Maxproductions data member. More...
|
|
bool | CMSSearchSettings_Base::IsSetMinnoenzyme (void) const |
| min number of AA in peptide for noenzyme search Check if a value has been assigned to Minnoenzyme data member. More...
|
|
bool | CMSSearchSettings_Base::CanGetMinnoenzyme (void) const |
| Check if it is safe to call GetMinnoenzyme method. More...
|
|
void | CMSSearchSettings_Base::ResetMinnoenzyme (void) |
| Reset Minnoenzyme data member. More...
|
|
void | CMSSearchSettings_Base::SetDefaultMinnoenzyme (void) |
| Assign default value to Minnoenzyme data member. More...
|
|
TMinnoenzyme | CMSSearchSettings_Base::GetMinnoenzyme (void) const |
| Get the Minnoenzyme member data. More...
|
|
void | CMSSearchSettings_Base::SetMinnoenzyme (TMinnoenzyme value) |
| Assign a value to Minnoenzyme data member. More...
|
|
TMinnoenzyme & | CMSSearchSettings_Base::SetMinnoenzyme (void) |
| Assign a value to Minnoenzyme data member. More...
|
|
bool | CMSSearchSettings_Base::IsSetMaxnoenzyme (void) const |
| max number of AA in peptide for noenzyme search (0=none) Check if a value has been assigned to Maxnoenzyme data member. More...
|
|
bool | CMSSearchSettings_Base::CanGetMaxnoenzyme (void) const |
| Check if it is safe to call GetMaxnoenzyme method. More...
|
|
void | CMSSearchSettings_Base::ResetMaxnoe |