Code generated by DATATOOL from 'omssa.asn' (module 'OMSSA')

Collaboration diagram for Code generated by DATATOOL from 'omssa.asn' (module 'OMSSA'):

Classes
class	CMSBioseq
	CMSBioseq –. More...
class	CMSBioseq_Base
	bioseq container More...
class	CMSBioseqSet_Base
	CMSBioseqSet_Base –. More...
class	CMSChargeHandle
	CMSChargeHandle –. More...
class	CMSChargeHandle_Base
	How to handle precursor charge. More...
class	CMSHits_Base
	hits to a given spectrum More...
class	CMSHitSet
	CMSHitSet –. More...
class	CMSHitSet_Base
	contains a set of hits to a single spectrum More...
class	CMSImmonium
	CMSImmonium –. More...
class	CMSImmonium_Base
	type of immonium ion More...
class	CMSInFile
	CMSInFile –. More...
class	CMSInFile_Base
	CMSInFile_Base –. More...
class	CMSIon
	CMSIon –. More...
class	CMSIon_Base
	ion type at a finer level than ion series More...
class	CMSIonAnnot
	CMSIonAnnot –. More...
class	CMSIonAnnot_Base
	annotated comments about the ion More...
class	CMSIterativeSettings
	CMSIterativeSettings –. More...
class	CMSIterativeSettings_Base
	Iterative search settings. More...
class	CMSLibrarySettings
	CMSLibrarySettings –. More...
class	CMSLibrarySettings_Base
	Library search settings. More...
class	CMSMassSet
	CMSMassSet –. More...
class	CMSMassSet_Base
	mass container More...
class	CMSModHit
	CMSModHit –. More...
class	CMSModHit_Base
	modifications to a hit peptide More...
class	CMSModSpec
	CMSModSpec –. More...
class	CMSModSpec_Base
	Modification Definition. More...
class	CMSModSpecSet_Base
	Holds a set of modifications. More...
class	CMSMZHit
	CMSMZHit –. More...
class	CMSMZHit_Base
	defines a particular ion More...
class	CMSOutFile
	CMSOutFile –. More...
class	CMSOutFile_Base
	CMSOutFile_Base –. More...
class	CMSPepHit
	CMSPepHit –. More...
class	CMSPepHit_Base
	contains information about sequences with identical peptide sequences More...
class	CMSRequest_Base
	The search request that is given to the OMSSA algorithm. More...
class	CMSResponse_Base
	search results More...
class	CMSScoreSet
	CMSScoreSet –. More...
class	CMSScoreSet_Base
	sets of scores More...
class	CMSSearch_Base
	holds both search requests and responses More...
class	CMSSearchSettings_Base
	Generic search settings. More...
class	CMSSearchSettingsSet
	CMSSearchSettingsSet –. More...
class	CMSSearchSettingsSet_Base
	CMSSearchSettingsSet_Base –. More...
class	CMSSpectrum
	CMSSpectrum –. More...
class	CMSSpectrum_Base
	Holds a single spectrum. More...
class	CMSSpectrumset
	CMSSpectrumset –. More...
class	CMSSpectrumset_Base
	Holds a set of spectra. More...
class	CNameValue
	CNameValue –. More...
class	CNameValue_Base
	Generic holder for experimental info. More...

Typedefs
typedef CMSBioseq_Base	CMSBioseq::Tparent
typedef CSerialObject	CMSBioseq_Base::Tparent
typedef int	CMSBioseq_Base::TOid
typedef CBioseq	CMSBioseq_Base::TSeq
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CMSBioseq_Base::TmemberIndex
typedef CSerialObject	CMSBioseqSet_Base::Tparent
typedef list< CRef< CMSBioseq > >	CMSBioseqSet_Base::Tdata
typedef CMSChargeHandle_Base	CMSChargeHandle::Tparent
typedef CSerialObject	CMSChargeHandle_Base::Tparent
typedef int	CMSChargeHandle_Base::TCalcplusone
typedef int	CMSChargeHandle_Base::TCalccharge
typedef int	CMSChargeHandle_Base::TMincharge
typedef int	CMSChargeHandle_Base::TMaxcharge
typedef int	CMSChargeHandle_Base::TConsidermult
typedef double	CMSChargeHandle_Base::TPlusone
typedef int	CMSChargeHandle_Base::TMaxproductcharge
typedef bool	CMSChargeHandle_Base::TProdlesspre
typedef int	CMSChargeHandle_Base::TNegative
typedef Tparent::CMemberIndex< E_memberIndex, 10 >	CMSChargeHandle_Base::TmemberIndex
typedef CSerialObject	CMSHits_Base::Tparent
typedef double	CMSHits_Base::TEvalue
typedef double	CMSHits_Base::TPvalue
typedef int	CMSHits_Base::TCharge
typedef list< CRef< CMSPepHit > >	CMSHits_Base::TPephits
typedef list< CRef< CMSMZHit > >	CMSHits_Base::TMzhits
typedef string	CMSHits_Base::TPepstring
typedef int	CMSHits_Base::TMass
typedef list< CRef< CMSModHit > >	CMSHits_Base::TMods
typedef string	CMSHits_Base::TPepstart
typedef string	CMSHits_Base::TPepstop
typedef int	CMSHits_Base::TProtlength
typedef int	CMSHits_Base::TTheomass
typedef int	CMSHits_Base::TOid
typedef list< CRef< CMSScoreSet > >	CMSHits_Base::TScores
typedef string	CMSHits_Base::TLibaccession
typedef Tparent::CMemberIndex< E_memberIndex, 16 >	CMSHits_Base::TmemberIndex
typedef CMSHitSet_Base	CMSHitSet::Tparent
typedef CSerialObject	CMSHitSet_Base::Tparent
typedef int	CMSHitSet_Base::TNumber
typedef int	CMSHitSet_Base::TError
typedef vector< CRef< CMSHits > >	CMSHitSet_Base::THits
typedef list< string >	CMSHitSet_Base::TIds
typedef list< CRef< CNameValue > >	CMSHitSet_Base::TNamevalue
typedef int	CMSHitSet_Base::TSettingid
typedef int	CMSHitSet_Base::TUserannotation
typedef Tparent::CMemberIndex< E_memberIndex, 8 >	CMSHitSet_Base::TmemberIndex
typedef CMSImmonium_Base	CMSImmonium::Tparent
typedef CSerialObject	CMSImmonium_Base::Tparent
typedef string	CMSImmonium_Base::TParent
typedef string	CMSImmonium_Base::TProduct
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CMSImmonium_Base::TmemberIndex
typedef CMSInFile_Base	CMSInFile::Tparent
typedef CSerialObject	CMSInFile_Base::Tparent
typedef string	CMSInFile_Base::TInfile
typedef int	CMSInFile_Base::TInfiletype
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CMSInFile_Base::TmemberIndex
typedef CMSIon_Base	CMSIon::Tparent
typedef CSerialObject	CMSIon_Base::Tparent
typedef int	CMSIon_Base::TNeutralloss
typedef int	CMSIon_Base::TIsotope
typedef string	CMSIon_Base::TInternal
typedef CMSImmonium	CMSIon_Base::TImmonium
typedef Tparent::CMemberIndex< E_memberIndex, 5 >	CMSIon_Base::TmemberIndex
typedef CMSIonAnnot_Base	CMSIonAnnot::Tparent
typedef CSerialObject	CMSIonAnnot_Base::Tparent
typedef bool	CMSIonAnnot_Base::TSuspect
typedef double	CMSIonAnnot_Base::TMassdiff
typedef bool	CMSIonAnnot_Base::TMissingisotope
typedef Tparent::CMemberIndex< E_memberIndex, 4 >	CMSIonAnnot_Base::TmemberIndex
typedef CMSIterativeSettings_Base	CMSIterativeSettings::Tparent
typedef CSerialObject	CMSIterativeSettings_Base::Tparent
typedef double	CMSIterativeSettings_Base::TResearchthresh
typedef double	CMSIterativeSettings_Base::TSubsetthresh
typedef double	CMSIterativeSettings_Base::TReplacethresh
typedef Tparent::CMemberIndex< E_memberIndex, 4 >	CMSIterativeSettings_Base::TmemberIndex
typedef CMSLibrarySettings_Base	CMSLibrarySettings::Tparent
typedef CSerialObject	CMSLibrarySettings_Base::Tparent
typedef list< string >	CMSLibrarySettings_Base::TLibnames
typedef bool	CMSLibrarySettings_Base::TPresearch
typedef bool	CMSLibrarySettings_Base::TUseomssascore
typedef bool	CMSLibrarySettings_Base::TUsereplicatescore
typedef bool	CMSLibrarySettings_Base::TQtofscore
typedef Tparent::CMemberIndex< E_memberIndex, 6 >	CMSLibrarySettings_Base::TmemberIndex
typedef CMSMassSet_Base	CMSMassSet::Tparent
typedef CSerialObject	CMSMassSet_Base::Tparent
typedef double	CMSMassSet_Base::TMonomass
typedef double	CMSMassSet_Base::TAveragemass
typedef double	CMSMassSet_Base::TN15mass
typedef Tparent::CMemberIndex< E_memberIndex, 4 >	CMSMassSet_Base::TmemberIndex
typedef CMSModHit_Base	CMSModHit::Tparent
typedef CSerialObject	CMSModHit_Base::Tparent
typedef int	CMSModHit_Base::TSite
typedef int	CMSModHit_Base::TModtype
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CMSModHit_Base::TmemberIndex
typedef CMSModSpec_Base	CMSModSpec::Tparent
typedef CSerialObject	CMSModSpec_Base::Tparent
typedef int	CMSModSpec_Base::TMod
typedef int	CMSModSpec_Base::TType
typedef string	CMSModSpec_Base::TName
typedef double	CMSModSpec_Base::TMonomass
typedef double	CMSModSpec_Base::TAveragemass
typedef double	CMSModSpec_Base::TN15mass
typedef list< string >	CMSModSpec_Base::TResidues
typedef CMSMassSet	CMSModSpec_Base::TNeutralloss
typedef int	CMSModSpec_Base::TUnimod
typedef string	CMSModSpec_Base::TPsi_ms
typedef Tparent::CMemberIndex< E_memberIndex, 11 >	CMSModSpec_Base::TmemberIndex
typedef CSerialObject	CMSModSpecSet_Base::Tparent
typedef list< CRef< CMSModSpec > >	CMSModSpecSet_Base::Tdata
typedef CMSMZHit_Base	CMSMZHit::Tparent
typedef CSerialObject	CMSMZHit_Base::Tparent
typedef int	CMSMZHit_Base::TIon
typedef int	CMSMZHit_Base::TCharge
typedef int	CMSMZHit_Base::TNumber
typedef int	CMSMZHit_Base::TMz
typedef int	CMSMZHit_Base::TIndex
typedef CMSIon	CMSMZHit_Base::TMoreion
typedef CMSIonAnnot	CMSMZHit_Base::TAnnotation
typedef Tparent::CMemberIndex< E_memberIndex, 8 >	CMSMZHit_Base::TmemberIndex
typedef CMSOutFile_Base	CMSOutFile::Tparent
typedef CSerialObject	CMSOutFile_Base::Tparent
typedef string	CMSOutFile_Base::TOutfile
typedef int	CMSOutFile_Base::TOutfiletype
typedef bool	CMSOutFile_Base::TIncluderequest
typedef Tparent::CMemberIndex< E_memberIndex, 4 >	CMSOutFile_Base::TmemberIndex
typedef CMSPepHit_Base	CMSPepHit::Tparent
typedef CSerialObject	CMSPepHit_Base::Tparent
typedef int	CMSPepHit_Base::TStart
typedef int	CMSPepHit_Base::TStop
typedef NCBI_NS_NCBI::TGi	CMSPepHit_Base::TGi
typedef string	CMSPepHit_Base::TAccession
typedef string	CMSPepHit_Base::TDefline
typedef int	CMSPepHit_Base::TProtlength
typedef int	CMSPepHit_Base::TOid
typedef bool	CMSPepHit_Base::TReversed
typedef string	CMSPepHit_Base::TPepstart
typedef string	CMSPepHit_Base::TPepstop
typedef Tparent::CMemberIndex< E_memberIndex, 11 >	CMSPepHit_Base::TmemberIndex
typedef CSerialObject	CMSRequest_Base::Tparent
typedef CMSSpectrumset	CMSRequest_Base::TSpectra
typedef CMSSearchSettings	CMSRequest_Base::TSettings
typedef string	CMSRequest_Base::TRid
typedef CMSSearchSettingsSet	CMSRequest_Base::TMoresettings
typedef CMSModSpecSet	CMSRequest_Base::TModset
typedef Tparent::CMemberIndex< E_memberIndex, 6 >	CMSRequest_Base::TmemberIndex
typedef CSerialObject	CMSResponse_Base::Tparent
typedef vector< CRef< CMSHitSet > >	CMSResponse_Base::THitsets
typedef int	CMSResponse_Base::TScale
typedef string	CMSResponse_Base::TRid
typedef int	CMSResponse_Base::TError
typedef string	CMSResponse_Base::TVersion
typedef string	CMSResponse_Base::TEmail
typedef int	CMSResponse_Base::TDbversion
typedef CMSBioseqSet	CMSResponse_Base::TBioseqs
typedef Tparent::CMemberIndex< E_memberIndex, 9 >	CMSResponse_Base::TmemberIndex
typedef CMSScoreSet_Base	CMSScoreSet::Tparent
typedef CSerialObject	CMSScoreSet_Base::Tparent
typedef string	CMSScoreSet_Base::TName
typedef double	CMSScoreSet_Base::TValue
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CMSScoreSet_Base::TmemberIndex
typedef CSerialObject	CMSSearch_Base::Tparent
typedef list< CRef< CMSRequest > >	CMSSearch_Base::TRequest
typedef list< CRef< CMSResponse > >	CMSSearch_Base::TResponse
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CMSSearch_Base::TmemberIndex
typedef CSerialObject	CMSSearchSettings_Base::Tparent
typedef int	CMSSearchSettings_Base::TPrecursorsearchtype
typedef int	CMSSearchSettings_Base::TProductsearchtype
typedef list< int >	CMSSearchSettings_Base::TIonstosearch
typedef double	CMSSearchSettings_Base::TPeptol
typedef double	CMSSearchSettings_Base::TMsmstol
typedef int	CMSSearchSettings_Base::TZdep
typedef double	CMSSearchSettings_Base::TCutoff
typedef double	CMSSearchSettings_Base::TCutlo
typedef double	CMSSearchSettings_Base::TCuthi
typedef double	CMSSearchSettings_Base::TCutinc
typedef int	CMSSearchSettings_Base::TSinglewin
typedef int	CMSSearchSettings_Base::TDoublewin
typedef int	CMSSearchSettings_Base::TSinglenum
typedef int	CMSSearchSettings_Base::TDoublenum
typedef list< int >	CMSSearchSettings_Base::TFixed
typedef list< int >	CMSSearchSettings_Base::TVariable
typedef int	CMSSearchSettings_Base::TEnzyme
typedef int	CMSSearchSettings_Base::TMissedcleave
typedef int	CMSSearchSettings_Base::THitlistlen
typedef string	CMSSearchSettings_Base::TDb
typedef int	CMSSearchSettings_Base::TTophitnum
typedef int	CMSSearchSettings_Base::TMinhit
typedef int	CMSSearchSettings_Base::TMinspectra
typedef int	CMSSearchSettings_Base::TScale
typedef int	CMSSearchSettings_Base::TMaxmods
typedef list< int >	CMSSearchSettings_Base::TTaxids
typedef CMSChargeHandle	CMSSearchSettings_Base::TChargehandling
typedef CMSModSpecSet	CMSSearchSettings_Base::TUsermods
typedef int	CMSSearchSettings_Base::TPseudocount
typedef int	CMSSearchSettings_Base::TSearchb1
typedef int	CMSSearchSettings_Base::TSearchctermproduct
typedef int	CMSSearchSettings_Base::TMaxproductions
typedef int	CMSSearchSettings_Base::TMinnoenzyme
typedef int	CMSSearchSettings_Base::TMaxnoenzyme
typedef double	CMSSearchSettings_Base::TExactmass
typedef int	CMSSearchSettings_Base::TSettingid
typedef CMSIterativeSettings	CMSSearchSettings_Base::TIterativesettings
typedef int	CMSSearchSettings_Base::TPrecursorcull
typedef list< CRef< CMSInFile > >	CMSSearchSettings_Base::TInfiles
typedef list< CRef< CMSOutFile > >	CMSSearchSettings_Base::TOutfiles
typedef int	CMSSearchSettings_Base::TNocorrelationscore
typedef double	CMSSearchSettings_Base::TProbfollowingion
typedef bool	CMSSearchSettings_Base::TNmethionine
typedef double	CMSSearchSettings_Base::TAutomassadjust
typedef double	CMSSearchSettings_Base::TLomasscutoff
typedef CMSLibrarySettings	CMSSearchSettings_Base::TLibsearchsettings
typedef list< int >	CMSSearchSettings_Base::TNoprolineions
typedef bool	CMSSearchSettings_Base::TReversesearch
typedef list< CRef< CNameValue > >	CMSSearchSettings_Base::TOthersettings
typedef int	CMSSearchSettings_Base::TNumisotopes
typedef bool	CMSSearchSettings_Base::TPepppm
typedef bool	CMSSearchSettings_Base::TMsmsppm
typedef int	CMSSearchSettings_Base::TReportedhitcount
typedef Tparent::CMemberIndex< E_memberIndex, 54 >	CMSSearchSettings_Base::TmemberIndex
typedef CMSSearchSettingsSet_Base	CMSSearchSettingsSet::Tparent
typedef CSerialObject	CMSSearchSettingsSet_Base::Tparent
typedef list< CRef< CMSSearchSettings > >	CMSSearchSettingsSet_Base::Tdata
typedef CMSSpectrum_Base	CMSSpectrum::Tparent
typedef CSerialObject	CMSSpectrum_Base::Tparent
typedef int	CMSSpectrum_Base::TNumber
typedef list< int >	CMSSpectrum_Base::TCharge
typedef int	CMSSpectrum_Base::TPrecursormz
typedef vector< int >	CMSSpectrum_Base::TMz
typedef vector< int >	CMSSpectrum_Base::TAbundance
typedef double	CMSSpectrum_Base::TIscale
typedef list< string >	CMSSpectrum_Base::TIds
typedef list< CRef< CNameValue > >	CMSSpectrum_Base::TNamevalue
typedef Tparent::CMemberIndex< E_memberIndex, 9 >	CMSSpectrum_Base::TmemberIndex
typedef CMSSpectrumset_Base	CMSSpectrumset::Tparent
typedef CSerialObject	CMSSpectrumset_Base::Tparent
typedef list< CRef< CMSSpectrum > >	CMSSpectrumset_Base::Tdata
typedef CNameValue_Base	CNameValue::Tparent
typedef CSerialObject	CNameValue_Base::Tparent
typedef string	CNameValue_Base::TName
typedef string	CNameValue_Base::TValue
typedef Tparent::CMemberIndex< E_memberIndex, 3 >	CNameValue_Base::TmemberIndex

Enumerations
enum class	CMSBioseq_Base::E_memberIndex { CMSBioseq_Base::e__allMandatory = 0 , CMSBioseq_Base::e_oid , CMSBioseq_Base::e_seq }
enum	EMSCalcCharge { eMSCalcCharge_calculate = 0 , eMSCalcCharge_usefile = 1 , eMSCalcCharge_userange = 2 }
	user instructions on whether to believe charges in input file More...
enum	EMSCalcPlusOne { eMSCalcPlusOne_dontcalc = 0 , eMSCalcPlusOne_calc = 1 }
	How is charge to be handled? Some input files are not clear on this. More...
enum class	CMSChargeHandle_Base::E_memberIndex {   CMSChargeHandle_Base::e__allMandatory = 0 , CMSChargeHandle_Base::e_calcplusone , CMSChargeHandle_Base::e_calccharge , CMSChargeHandle_Base::e_mincharge ,   CMSChargeHandle_Base::e_maxcharge , CMSChargeHandle_Base::e_considermult , CMSChargeHandle_Base::e_plusone , CMSChargeHandle_Base::e_maxproductcharge ,   CMSChargeHandle_Base::e_prodlesspre , CMSChargeHandle_Base::e_negative }
enum	EMSEnzymes {   eMSEnzymes_trypsin = 0 , eMSEnzymes_argc = 1 , eMSEnzymes_cnbr = 2 , eMSEnzymes_chymotrypsin = 3 ,   eMSEnzymes_formicacid = 4 , eMSEnzymes_lysc = 5 , eMSEnzymes_lysc_p = 6 , eMSEnzymes_pepsin_a = 7 ,   eMSEnzymes_tryp_cnbr = 8 , eMSEnzymes_tryp_chymo = 9 , eMSEnzymes_trypsin_p = 10 , eMSEnzymes_whole_protein = 11 ,   eMSEnzymes_aspn = 12 , eMSEnzymes_gluc = 13 , eMSEnzymes_aspngluc = 14 , eMSEnzymes_top_down = 15 ,   eMSEnzymes_semi_tryptic = 16 , eMSEnzymes_no_enzyme = 17 , eMSEnzymes_chymotrypsin_p = 18 , eMSEnzymes_aspn_de = 19 ,   eMSEnzymes_gluc_de = 20 , eMSEnzymes_lysn = 21 , eMSEnzymes_thermolysin_p = 22 , eMSEnzymes_semi_chymotrypsin = 23 ,   eMSEnzymes_semi_gluc = 24 , eMSEnzymes_max = 25 , eMSEnzymes_none = 255 }
	enumerate enzymes More...
enum	EMSHitError { eMSHitError_none = 0 , eMSHitError_generalerr = 1 , eMSHitError_unable2read = 2 , eMSHitError_notenuffpeaks = 3 }
	error return for a particular spectrum's hitset More...
enum class	CMSHits_Base::E_memberIndex {   CMSHits_Base::e__allMandatory = 0 , CMSHits_Base::e_evalue , CMSHits_Base::e_pvalue , CMSHits_Base::e_charge ,   CMSHits_Base::e_pephits , CMSHits_Base::e_mzhits , CMSHits_Base::e_pepstring , CMSHits_Base::e_mass ,   CMSHits_Base::e_mods , CMSHits_Base::e_pepstart , CMSHits_Base::e_pepstop , CMSHits_Base::e_protlength ,   CMSHits_Base::e_theomass , CMSHits_Base::e_oid , CMSHits_Base::e_scores , CMSHits_Base::e_libaccession }
enum class	CMSHitSet_Base::E_memberIndex {   CMSHitSet_Base::e__allMandatory = 0 , CMSHitSet_Base::e_number , CMSHitSet_Base::e_error , CMSHitSet_Base::e_hits ,   CMSHitSet_Base::e_ids , CMSHitSet_Base::e_namevalue , CMSHitSet_Base::e_settingid , CMSHitSet_Base::e_userannotation }
enum class	CMSImmonium_Base::E_memberIndex { CMSImmonium_Base::e__allMandatory = 0 , CMSImmonium_Base::e_parent , CMSImmonium_Base::e_product }
enum class	CMSInFile_Base::E_memberIndex { CMSInFile_Base::e__allMandatory = 0 , CMSInFile_Base::e_infile , CMSInFile_Base::e_infiletype }
enum class	CMSIon_Base::E_memberIndex {   CMSIon_Base::e__allMandatory = 0 , CMSIon_Base::e_neutralloss , CMSIon_Base::e_isotope , CMSIon_Base::e_internal ,   CMSIon_Base::e_immonium }
enum class	CMSIonAnnot_Base::E_memberIndex { CMSIonAnnot_Base::e__allMandatory = 0 , CMSIonAnnot_Base::e_suspect , CMSIonAnnot_Base::e_massdiff , CMSIonAnnot_Base::e_missingisotope }
enum	EMSIonIsotopicType {   eMSIonIsotopicType_monoisotopic = 0 , eMSIonIsotopicType_c13 = 1 , eMSIonIsotopicType_c13two = 2 , eMSIonIsotopicType_c13three = 3 ,   eMSIonIsotopicType_c13four = 4 }
	iosotopic type of ion More...
enum	EMSIonNeutralLoss { eMSIonNeutralLoss_water = 0 , eMSIonNeutralLoss_ammonia = 1 }
	types of neutral loss More...
enum	EMSIonType {   eMSIonType_a = 0 , eMSIonType_b = 1 , eMSIonType_c = 2 , eMSIonType_x = 3 ,   eMSIonType_y = 4 , eMSIonType_z = 5 , eMSIonType_parent = 6 , eMSIonType_internal = 7 ,   eMSIonType_immonium = 8 , eMSIonType_unknown = 9 , eMSIonType_adot = 10 , eMSIonType_x_CO2 = 11 ,   eMSIonType_adot_CO2 = 12 , eMSIonType_max = 13 }
	enumeration of ion types More...
enum class	CMSIterativeSettings_Base::E_memberIndex { CMSIterativeSettings_Base::e__allMandatory = 0 , CMSIterativeSettings_Base::e_researchthresh , CMSIterativeSettings_Base::e_subsetthresh , CMSIterativeSettings_Base::e_replacethresh }
enum class	CMSLibrarySettings_Base::E_memberIndex {   CMSLibrarySettings_Base::e__allMandatory = 0 , CMSLibrarySettings_Base::e_libnames , CMSLibrarySettings_Base::e_presearch , CMSLibrarySettings_Base::e_useomssascore ,   CMSLibrarySettings_Base::e_usereplicatescore , CMSLibrarySettings_Base::e_qtofscore }
enum class	CMSMassSet_Base::E_memberIndex { CMSMassSet_Base::e__allMandatory = 0 , CMSMassSet_Base::e_monomass , CMSMassSet_Base::e_averagemass , CMSMassSet_Base::e_n15mass }
enum	EMSMod {   eMSMod_methylk = 0 , eMSMod_oxym = 1 , eMSMod_carboxymethylc = 2 , eMSMod_carbamidomethylc = 3 ,   eMSMod_deamidationkq = 4 , eMSMod_propionamidec = 5 , eMSMod_phosphorylations = 6 , eMSMod_phosphorylationt = 7 ,   eMSMod_phosphorylationy = 8 , eMSMod_ntermmcleave = 9 , eMSMod_ntermacetyl = 10 , eMSMod_ntermmethyl = 11 ,   eMSMod_ntermtrimethyl = 12 , eMSMod_methythiold = 13 , eMSMod_methylq = 14 , eMSMod_trimethylk = 15 ,   eMSMod_methyld = 16 , eMSMod_methyle = 17 , eMSMod_ctermpepmethyl = 18 , eMSMod_trideuteromethyld = 19 ,   eMSMod_trideuteromethyle = 20 , eMSMod_ctermpeptrideuteromethyl = 21 , eMSMod_nformylmet = 22 , eMSMod_twoamino3oxobutanoicacid = 23 ,   eMSMod_acetylk = 24 , eMSMod_ctermamide = 25 , eMSMod_bmethylthiold = 26 , eMSMod_carbamidomethylk = 27 ,   eMSMod_carbamidometylh = 28 , eMSMod_carbamidomethyld = 29 , eMSMod_carbamidomethyle = 30 , eMSMod_carbamylk = 31 ,   eMSMod_ntermcarbamyl = 32 , eMSMod_citrullinationr = 33 , eMSMod_cysteicacidc = 34 , eMSMod_diiodinationy = 35 ,   eMSMod_dimethylk = 36 , eMSMod_dimethylr = 37 , eMSMod_ntermpepdimethyl = 38 , eMSMod_dihydroxyf = 39 ,   eMSMod_thioacetylk = 40 , eMSMod_ntermpeptioacetyl = 41 , eMSMod_farnesylationc = 42 , eMSMod_formylk = 43 ,   eMSMod_ntermpepformyl = 44 , eMSMod_formylkynureninw = 45 , eMSMod_phef = 46 , eMSMod_gammacarboxyld = 47 ,   eMSMod_gammacarboxyle = 48 , eMSMod_geranylgeranylc = 49 , eMSMod_ntermpepglucuronylg = 50 , eMSMod_glutathionec = 51 ,   eMSMod_glyglyk = 52 , eMSMod_guanidinationk = 53 , eMSMod_his2asnh = 54 , eMSMod_his2asph = 55 ,   eMSMod_ctermpephsem = 56 , eMSMod_ctermpephselactm = 57 , eMSMod_hydroxykynureninw = 58 , eMSMod_hydroxylationd = 59 ,   eMSMod_hydroxylationk = 60 , eMSMod_hydroxylationn = 61 , eMSMod_hydroxylationp = 62 , eMSMod_hydroxylationf = 63 ,   eMSMod_hydroxylationy = 64 , eMSMod_iodinationy = 65 , eMSMod_kynureninw = 66 , eMSMod_lipoylk = 67 ,   eMSMod_ctermpepmeester = 68 , eMSMod_meesterd = 69 , eMSMod_meestere = 70 , eMSMod_meesters = 71 ,   eMSMod_meestery = 72 , eMSMod_methylc = 73 , eMSMod_methylh = 74 , eMSMod_methyln = 75 ,   eMSMod_ntermpepmethyl = 76 , eMSMod_methylr = 77 , eMSMod_ntermpepmyristoyeylationg = 78 , eMSMod_ntermpepmyristoyl4hg = 79 ,   eMSMod_ntermpepmyristoylationg = 80 , eMSMod_myristoylationk = 81 , eMSMod_ntermformyl = 82 , eMSMod_nemc = 83 ,   eMSMod_nipcam = 84 , eMSMod_nitrow = 85 , eMSMod_nitroy = 86 , eMSMod_ctermpepo18 = 87 ,   eMSMod_ctermpepdio18 = 88 , eMSMod_oxyh = 89 , eMSMod_oxyw = 90 , eMSMod_ppantetheines = 91 ,   eMSMod_palmitoylationc = 92 , eMSMod_palmitoylationk = 93 , eMSMod_palmitoylations = 94 , eMSMod_palmitoylationt = 95 ,   eMSMod_phospholosss = 96 , eMSMod_phospholosst = 97 , eMSMod_phospholossy = 98 , eMSMod_phosphoneutrallossc = 99 ,   eMSMod_phosphoneutrallossd = 100 , eMSMod_phosphoneutrallossh = 101 , eMSMod_propionylk = 102 , eMSMod_ntermpeppropionyl = 103 ,   eMSMod_propionylheavyk = 104 , eMSMod_ntermpeppropionylheavy = 105 , eMSMod_pyridylk = 106 , eMSMod_ntermpeppyridyl = 107 ,   eMSMod_ntermpeppyrocmc = 108 , eMSMod_ntermpeppyroe = 109 , eMSMod_ntermpeppyroq = 110 , eMSMod_pyroglutamicp = 111 ,   eMSMod_spyridylethylc = 112 , eMSMod_semetm = 113 , eMSMod_sulfationy = 114 , eMSMod_suphonem = 115 ,   eMSMod_triiodinationy = 116 , eMSMod_trimethylationr = 117 , eMSMod_ntermpeptripalmitatec = 118 , eMSMod_usermod1 = 119 ,   eMSMod_usermod2 = 120 , eMSMod_usermod3 = 121 , eMSMod_usermod4 = 122 , eMSMod_usermod5 = 123 ,   eMSMod_usermod6 = 124 , eMSMod_usermod7 = 125 , eMSMod_usermod8 = 126 , eMSMod_usermod9 = 127 ,   eMSMod_usermod10 = 128 , eMSMod_icatlight = 129 , eMSMod_icatheavy = 130 , eMSMod_camthiopropanoylk = 131 ,   eMSMod_phosphoneutrallosss = 132 , eMSMod_phosphoneutrallosst = 133 , eMSMod_phosphoetdlosss = 134 , eMSMod_phosphoetdlosst = 135 ,   eMSMod_arg_13c6 = 136 , eMSMod_arg_13c6_15n4 = 137 , eMSMod_lys_13c6 = 138 , eMSMod_oxy18 = 139 ,   eMSMod_beta_elim_s = 140 , eMSMod_beta_elim_t = 141 , eMSMod_usermod11 = 142 , eMSMod_usermod12 = 143 ,   eMSMod_usermod13 = 144 , eMSMod_usermod14 = 145 , eMSMod_usermod15 = 146 , eMSMod_usermod16 = 147 ,   eMSMod_usermod17 = 148 , eMSMod_usermod18 = 149 , eMSMod_usermod19 = 150 , eMSMod_usermod20 = 151 ,   eMSMod_usermod21 = 152 , eMSMod_usermod22 = 153 , eMSMod_usermod23 = 154 , eMSMod_usermod24 = 155 ,   eMSMod_usermod25 = 156 , eMSMod_usermod26 = 157 , eMSMod_usermod27 = 158 , eMSMod_usermod28 = 159 ,   eMSMod_usermod29 = 160 , eMSMod_usermod30 = 161 , eMSMod_sulfinicacid = 162 , eMSMod_arg2orn = 163 ,   eMSMod_dehydro = 164 , eMSMod_carboxykynurenin = 165 , eMSMod_sumoylation = 166 , eMSMod_iTRAQ114nterm = 167 ,   eMSMod_iTRAQ114K = 168 , eMSMod_iTRAQ114Y = 169 , eMSMod_iTRAQ115nterm = 170 , eMSMod_iTRAQ115K = 171 ,   eMSMod_iTRAQ115Y = 172 , eMSMod_iTRAQ116nterm = 173 , eMSMod_iTRAQ116K = 174 , eMSMod_iTRAQ116Y = 175 ,   eMSMod_iTRAQ117nterm = 176 , eMSMod_iTRAQ117K = 177 , eMSMod_iTRAQ117Y = 178 , eMSMod_mmts = 179 ,   eMSMod_lys_2H4 = 180 , eMSMod_lys_13C615N2 = 181 , eMSMod_hexNAcN = 182 , eMSMod_dHexHexNAcN = 183 ,   eMSMod_hexNAcS = 184 , eMSMod_hexNAcT = 185 , eMSMod_mod186 = 186 , eMSMod_mod187 = 187 ,   eMSMod_mod188 = 188 , eMSMod_mod189 = 189 , eMSMod_mod190 = 190 , eMSMod_mod191 = 191 ,   eMSMod_mod192 = 192 , eMSMod_mod193 = 193 , eMSMod_mod194 = 194 , eMSMod_mod195 = 195 ,   eMSMod_mod196 = 196 , eMSMod_mod197 = 197 , eMSMod_mod198 = 198 , eMSMod_mod199 = 199 ,   eMSMod_mod200 = 200 , eMSMod_mod201 = 201 , eMSMod_mod202 = 202 , eMSMod_mod203 = 203 ,   eMSMod_mod204 = 204 , eMSMod_mod205 = 205 , eMSMod_mod206 = 206 , eMSMod_mod207 = 207 ,   eMSMod_mod208 = 208 , eMSMod_mod209 = 209 , eMSMod_mod210 = 210 , eMSMod_mod211 = 211 ,   eMSMod_mod212 = 212 , eMSMod_mod213 = 213 , eMSMod_mod214 = 214 , eMSMod_mod215 = 215 ,   eMSMod_mod216 = 216 , eMSMod_mod217 = 217 , eMSMod_mod218 = 218 , eMSMod_mod219 = 219 ,   eMSMod_mod220 = 220 , eMSMod_mod221 = 221 , eMSMod_mod222 = 222 , eMSMod_mod223 = 223 ,   eMSMod_mod224 = 224 , eMSMod_mod225 = 225 , eMSMod_mod226 = 226 , eMSMod_mod227 = 227 ,   eMSMod_mod228 = 228 , eMSMod_mod229 = 229 , eMSMod_mod230 = 230 , eMSMod_max = 231 ,   eMSMod_unknown = 9999 , eMSMod_none = 10000 }
	enumerate modifications More...
enum class	CMSModHit_Base::E_memberIndex { CMSModHit_Base::e__allMandatory = 0 , CMSModHit_Base::e_site , CMSModHit_Base::e_modtype }
enum class	CMSModSpec_Base::E_memberIndex {   CMSModSpec_Base::e__allMandatory = 0 , CMSModSpec_Base::e_mod , CMSModSpec_Base::e_type , CMSModSpec_Base::e_name ,   CMSModSpec_Base::e_monomass , CMSModSpec_Base::e_averagemass , CMSModSpec_Base::e_n15mass , CMSModSpec_Base::e_residues ,   CMSModSpec_Base::e_neutralloss , CMSModSpec_Base::e_unimod , CMSModSpec_Base::e_psi_ms }
enum	EMSModType {   eMSModType_modaa = 0 , eMSModType_modn = 1 , eMSModType_modnaa = 2 , eMSModType_modc = 3 ,   eMSModType_modcaa = 4 , eMSModType_modnp = 5 , eMSModType_modnpaa = 6 , eMSModType_modcp = 7 ,   eMSModType_modcpaa = 8 , eMSModType_modmax = 9 }
	enumerate modification types More...
enum class	CMSMZHit_Base::E_memberIndex {   CMSMZHit_Base::e__allMandatory = 0 , CMSMZHit_Base::e_ion , CMSMZHit_Base::e_charge , CMSMZHit_Base::e_number ,   CMSMZHit_Base::e_mz , CMSMZHit_Base::e_index , CMSMZHit_Base::e_moreion , CMSMZHit_Base::e_annotation }
enum class	CMSOutFile_Base::E_memberIndex { CMSOutFile_Base::e__allMandatory = 0 , CMSOutFile_Base::e_outfile , CMSOutFile_Base::e_outfiletype , CMSOutFile_Base::e_includerequest }
enum class	CMSPepHit_Base::E_memberIndex {   CMSPepHit_Base::e__allMandatory = 0 , CMSPepHit_Base::e_start , CMSPepHit_Base::e_stop , CMSPepHit_Base::e_gi ,   CMSPepHit_Base::e_accession , CMSPepHit_Base::e_defline , CMSPepHit_Base::e_protlength , CMSPepHit_Base::e_oid ,   CMSPepHit_Base::e_reversed , CMSPepHit_Base::e_pepstart , CMSPepHit_Base::e_pepstop }
enum class	CMSRequest_Base::E_memberIndex {   CMSRequest_Base::e__allMandatory = 0 , CMSRequest_Base::e_spectra , CMSRequest_Base::e_settings , CMSRequest_Base::e_rid ,   CMSRequest_Base::e_moresettings , CMSRequest_Base::e_modset }
enum class	CMSResponse_Base::E_memberIndex {   CMSResponse_Base::e__allMandatory = 0 , CMSResponse_Base::e_hitsets , CMSResponse_Base::e_scale , CMSResponse_Base::e_rid ,   CMSResponse_Base::e_error , CMSResponse_Base::e_version , CMSResponse_Base::e_email , CMSResponse_Base::e_dbversion ,   CMSResponse_Base::e_bioseqs }
enum	EMSResponseError { eMSResponseError_none = 0 , eMSResponseError_generalerr = 1 , eMSResponseError_noblastdb = 2 , eMSResponseError_noinput = 3 }
	error return for the entire response More...
enum class	CMSScoreSet_Base::E_memberIndex { CMSScoreSet_Base::e__allMandatory = 0 , CMSScoreSet_Base::e_name , CMSScoreSet_Base::e_value }
enum class	CMSSearch_Base::E_memberIndex { CMSSearch_Base::e__allMandatory = 0 , CMSSearch_Base::e_request , CMSSearch_Base::e_response }
enum class	CMSSearchSettings_Base::E_memberIndex {   CMSSearchSettings_Base::e__allMandatory = 0 , CMSSearchSettings_Base::e_precursorsearchtype , CMSSearchSettings_Base::e_productsearchtype , CMSSearchSettings_Base::e_ionstosearch ,   CMSSearchSettings_Base::e_peptol , CMSSearchSettings_Base::e_msmstol , CMSSearchSettings_Base::e_zdep , CMSSearchSettings_Base::e_cutoff ,   CMSSearchSettings_Base::e_cutlo , CMSSearchSettings_Base::e_cuthi , CMSSearchSettings_Base::e_cutinc , CMSSearchSettings_Base::e_singlewin ,   CMSSearchSettings_Base::e_doublewin , CMSSearchSettings_Base::e_singlenum , CMSSearchSettings_Base::e_doublenum , CMSSearchSettings_Base::e_fixed ,   CMSSearchSettings_Base::e_variable , CMSSearchSettings_Base::e_enzyme , CMSSearchSettings_Base::e_missedcleave , CMSSearchSettings_Base::e_hitlistlen ,   CMSSearchSettings_Base::e_db , CMSSearchSettings_Base::e_tophitnum , CMSSearchSettings_Base::e_minhit , CMSSearchSettings_Base::e_minspectra ,   CMSSearchSettings_Base::e_scale , CMSSearchSettings_Base::e_maxmods , CMSSearchSettings_Base::e_taxids , CMSSearchSettings_Base::e_chargehandling ,   CMSSearchSettings_Base::e_usermods , CMSSearchSettings_Base::e_pseudocount , CMSSearchSettings_Base::e_searchb1 , CMSSearchSettings_Base::e_searchctermproduct ,   CMSSearchSettings_Base::e_maxproductions , CMSSearchSettings_Base::e_minnoenzyme , CMSSearchSettings_Base::e_maxnoenzyme , CMSSearchSettings_Base::e_exactmass ,   CMSSearchSettings_Base::e_settingid , CMSSearchSettings_Base::e_iterativesettings , CMSSearchSettings_Base::e_precursorcull , CMSSearchSettings_Base::e_infiles ,   CMSSearchSettings_Base::e_outfiles , CMSSearchSettings_Base::e_nocorrelationscore , CMSSearchSettings_Base::e_probfollowingion , CMSSearchSettings_Base::e_nmethionine ,   CMSSearchSettings_Base::e_automassadjust , CMSSearchSettings_Base::e_lomasscutoff , CMSSearchSettings_Base::e_libsearchsettings , CMSSearchSettings_Base::e_noprolineions ,   CMSSearchSettings_Base::e_reversesearch , CMSSearchSettings_Base::e_othersettings , CMSSearchSettings_Base::e_numisotopes , CMSSearchSettings_Base::e_pepppm ,   CMSSearchSettings_Base::e_msmsppm , CMSSearchSettings_Base::e_reportedhitcount }
enum	EMSSearchType {   eMSSearchType_monoisotopic = 0 , eMSSearchType_average = 1 , eMSSearchType_monon15 = 2 , eMSSearchType_exact = 3 ,   eMSSearchType_multiisotope = 4 , eMSSearchType_max = 5 }
	what type of atomic mass to use More...
enum	EMSSerialDataFormat {   eMSSerialDataFormat_none = 0 , eMSSerialDataFormat_asntext = 1 , eMSSerialDataFormat_asnbinary = 2 , eMSSerialDataFormat_xml = 3 ,   eMSSerialDataFormat_csv = 4 , eMSSerialDataFormat_pepxml = 5 , eMSSerialDataFormat_xmlbz2 = 6 }
	Access to EMSSerialDataFormat's attributes (values, names) as defined in spec. More...
enum class	CMSSpectrum_Base::E_memberIndex {   CMSSpectrum_Base::e__allMandatory = 0 , CMSSpectrum_Base::e_number , CMSSpectrum_Base::e_charge , CMSSpectrum_Base::e_precursormz ,   CMSSpectrum_Base::e_mz , CMSSpectrum_Base::e_abundance , CMSSpectrum_Base::e_iscale , CMSSpectrum_Base::e_ids ,   CMSSpectrum_Base::e_namevalue }
enum	EMSSpectrumFileType {   eMSSpectrumFileType_dta = 0 , eMSSpectrumFileType_dtablank = 1 , eMSSpectrumFileType_dtaxml = 2 , eMSSpectrumFileType_asc = 3 ,   eMSSpectrumFileType_pkl = 4 , eMSSpectrumFileType_pks = 5 , eMSSpectrumFileType_sciex = 6 , eMSSpectrumFileType_mgf = 7 ,   eMSSpectrumFileType_unknown = 8 , eMSSpectrumFileType_oms = 9 , eMSSpectrumFileType_omx = 10 , eMSSpectrumFileType_xml = 11 ,   eMSSpectrumFileType_omxbz2 = 12 }
	Access to EMSSpectrumFileType's attributes (values, names) as defined in spec. More...
enum	EMSUserAnnot { eMSUserAnnot_none = 0 , eMSUserAnnot_delete = 1 , eMSUserAnnot_flag = 2 }
	MSHitSet annotation by end user. More...
enum	EMSZdependence { eMSZdependence_independent = 0 , eMSZdependence_linearwithz = 1 , eMSZdependence_max = 2 }
	what is the charge dependence of the mass tolerance? More...
enum class	CNameValue_Base::E_memberIndex { CNameValue_Base::e__allMandatory = 0 , CNameValue_Base::e_name , CNameValue_Base::e_value }

Functions
	CMSBioseq::CMSBioseq (void)
	CMSBioseq::~CMSBioseq (void)
	CMSBioseq::CMSBioseq (const CMSBioseq &value)
CMSBioseq &	CMSBioseq::operator= (const CMSBioseq &value)
	CMSBioseq_Base::CMSBioseq_Base (void)
virtual	CMSBioseq_Base::~CMSBioseq_Base (void)
	CMSBioseq_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSBioseq_Base::IsSetOid (void) const
	blast library oid Check if a value has been assigned to Oid data member. More...
bool	CMSBioseq_Base::CanGetOid (void) const
	Check if it is safe to call GetOid method. More...
void	CMSBioseq_Base::ResetOid (void)
	Reset Oid data member. More...
TOid	CMSBioseq_Base::GetOid (void) const
	Get the Oid member data. More...
void	CMSBioseq_Base::SetOid (TOid value)
	Assign a value to Oid data member. More...
TOid &	CMSBioseq_Base::SetOid (void)
	Assign a value to Oid data member. More...
bool	CMSBioseq_Base::IsSetSeq (void) const
	Check if a value has been assigned to Seq data member. More...
bool	CMSBioseq_Base::CanGetSeq (void) const
	Check if it is safe to call GetSeq method. More...
void	CMSBioseq_Base::ResetSeq (void)
	Reset Seq data member. More...
const TSeq &	CMSBioseq_Base::GetSeq (void) const
	Get the Seq member data. More...
void	CMSBioseq_Base::SetSeq (TSeq &value)
	Assign a value to Seq data member. More...
TSeq &	CMSBioseq_Base::SetSeq (void)
	Assign a value to Seq data member. More...
virtual void	CMSBioseq_Base::Reset (void)
	Reset the whole object. More...
	CMSBioseq_Base::CMSBioseq_Base (const CMSBioseq_Base &)
CMSBioseq_Base &	CMSBioseq_Base::operator= (const CMSBioseq_Base &)
	CMSBioseqSet_Base::CMSBioseqSet_Base (void)
virtual	CMSBioseqSet_Base::~CMSBioseqSet_Base (void)
	CMSBioseqSet_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSBioseqSet_Base::IsSet (void) const
	Check if a value has been assigned to data member. More...
bool	CMSBioseqSet_Base::CanGet (void) const
	Check if it is safe to call Get method. More...
void	CMSBioseqSet_Base::Reset (void)
	Reset data member. More...
const Tdata &	CMSBioseqSet_Base::Get (void) const
	Get the member data. More...
Tdata &	CMSBioseqSet_Base::Set (void)
	Assign a value to data member. More...
	CMSBioseqSet_Base::operator const Tdata & (void) const
	Conversion operator to 'const Tdata' type. More...
	CMSBioseqSet_Base::operator Tdata & (void)
	Conversion operator to 'Tdata' type. More...
	CMSBioseqSet_Base::CMSBioseqSet_Base (const CMSBioseqSet_Base &)
CMSBioseqSet_Base &	CMSBioseqSet_Base::operator= (const CMSBioseqSet_Base &)
	CMSChargeHandle::CMSChargeHandle (void)
	CMSChargeHandle::~CMSChargeHandle (void)
	CMSChargeHandle::CMSChargeHandle (const CMSChargeHandle &value)
CMSChargeHandle &	CMSChargeHandle::operator= (const CMSChargeHandle &value)
	CMSChargeHandle_Base::CMSChargeHandle_Base (void)
virtual	CMSChargeHandle_Base::~CMSChargeHandle_Base (void)
	CMSChargeHandle_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSChargeHandle_Base::IsSetCalcplusone (void) const
	do we guess charge one? Check if a value has been assigned to Calcplusone data member. More...
bool	CMSChargeHandle_Base::CanGetCalcplusone (void) const
	Check if it is safe to call GetCalcplusone method. More...
void	CMSChargeHandle_Base::ResetCalcplusone (void)
	Reset Calcplusone data member. More...
void	CMSChargeHandle_Base::SetDefaultCalcplusone (void)
	Assign default value to Calcplusone data member. More...
TCalcplusone	CMSChargeHandle_Base::GetCalcplusone (void) const
	Get the Calcplusone member data. More...
void	CMSChargeHandle_Base::SetCalcplusone (TCalcplusone value)
	Assign a value to Calcplusone data member. More...
TCalcplusone &	CMSChargeHandle_Base::SetCalcplusone (void)
	Assign a value to Calcplusone data member. More...
bool	CMSChargeHandle_Base::IsSetCalccharge (void) const
	how do we handle charges? Check if a value has been assigned to Calccharge data member. More...
bool	CMSChargeHandle_Base::CanGetCalccharge (void) const
	Check if it is safe to call GetCalccharge method. More...
void	CMSChargeHandle_Base::ResetCalccharge (void)
	Reset Calccharge data member. More...
void	CMSChargeHandle_Base::SetDefaultCalccharge (void)
	Assign default value to Calccharge data member. More...
TCalccharge	CMSChargeHandle_Base::GetCalccharge (void) const
	Get the Calccharge member data. More...
void	CMSChargeHandle_Base::SetCalccharge (TCalccharge value)
	Assign a value to Calccharge data member. More...
TCalccharge &	CMSChargeHandle_Base::SetCalccharge (void)
	Assign a value to Calccharge data member. More...
bool	CMSChargeHandle_Base::IsSetMincharge (void) const
	if userange, what is the min? Check if a value has been assigned to Mincharge data member. More...
bool	CMSChargeHandle_Base::CanGetMincharge (void) const
	Check if it is safe to call GetMincharge method. More...
void	CMSChargeHandle_Base::ResetMincharge (void)
	Reset Mincharge data member. More...
void	CMSChargeHandle_Base::SetDefaultMincharge (void)
	Assign default value to Mincharge data member. More...
TMincharge	CMSChargeHandle_Base::GetMincharge (void) const
	Get the Mincharge member data. More...
void	CMSChargeHandle_Base::SetMincharge (TMincharge value)
	Assign a value to Mincharge data member. More...
TMincharge &	CMSChargeHandle_Base::SetMincharge (void)
	Assign a value to Mincharge data member. More...
bool	CMSChargeHandle_Base::IsSetMaxcharge (void) const
	if userange, what is the max? Check if a value has been assigned to Maxcharge data member. More...
bool	CMSChargeHandle_Base::CanGetMaxcharge (void) const
	Check if it is safe to call GetMaxcharge method. More...
void	CMSChargeHandle_Base::ResetMaxcharge (void)
	Reset Maxcharge data member. More...
void	CMSChargeHandle_Base::SetDefaultMaxcharge (void)
	Assign default value to Maxcharge data member. More...
TMaxcharge	CMSChargeHandle_Base::GetMaxcharge (void) const
	Get the Maxcharge member data. More...
void	CMSChargeHandle_Base::SetMaxcharge (TMaxcharge value)
	Assign a value to Maxcharge data member. More...
TMaxcharge &	CMSChargeHandle_Base::SetMaxcharge (void)
	Assign a value to Maxcharge data member. More...
bool	CMSChargeHandle_Base::IsSetConsidermult (void) const
	at which precursor charge to consider +2 ions? Check if a value has been assigned to Considermult data member. More...
bool	CMSChargeHandle_Base::CanGetConsidermult (void) const
	Check if it is safe to call GetConsidermult method. More...
void	CMSChargeHandle_Base::ResetConsidermult (void)
	Reset Considermult data member. More...
void	CMSChargeHandle_Base::SetDefaultConsidermult (void)
	Assign default value to Considermult data member. More...
TConsidermult	CMSChargeHandle_Base::GetConsidermult (void) const
	Get the Considermult member data. More...
void	CMSChargeHandle_Base::SetConsidermult (TConsidermult value)
	Assign a value to Considermult data member. More...
TConsidermult &	CMSChargeHandle_Base::SetConsidermult (void)
	Assign a value to Considermult data member. More...
bool	CMSChargeHandle_Base::IsSetPlusone (void) const
	what % of peaks below precursor needed to call as +1 Check if a value has been assigned to Plusone data member. More...
bool	CMSChargeHandle_Base::CanGetPlusone (void) const
	Check if it is safe to call GetPlusone method. More...
void	CMSChargeHandle_Base::ResetPlusone (void)
	Reset Plusone data member. More...
TPlusone	CMSChargeHandle_Base::GetPlusone (void) const
	Get the Plusone member data. More...
void	CMSChargeHandle_Base::SetPlusone (TPlusone value)
	Assign a value to Plusone data member. More...
TPlusone &	CMSChargeHandle_Base::SetPlusone (void)
	Assign a value to Plusone data member. More...
bool	CMSChargeHandle_Base::IsSetMaxproductcharge (void) const
	maximum product ion charge Check if a value has been assigned to Maxproductcharge data member. More...
bool	CMSChargeHandle_Base::CanGetMaxproductcharge (void) const
	Check if it is safe to call GetMaxproductcharge method. More...
void	CMSChargeHandle_Base::ResetMaxproductcharge (void)
	Reset Maxproductcharge data member. More...
TMaxproductcharge	CMSChargeHandle_Base::GetMaxproductcharge (void) const
	Get the Maxproductcharge member data. More...
void	CMSChargeHandle_Base::SetMaxproductcharge (TMaxproductcharge value)
	Assign a value to Maxproductcharge data member. More...
TMaxproductcharge &	CMSChargeHandle_Base::SetMaxproductcharge (void)
	Assign a value to Maxproductcharge data member. More...
bool	CMSChargeHandle_Base::IsSetProdlesspre (void) const
	product charge always less thanor equal to precursor? Check if a value has been assigned to Prodlesspre data member. More...
bool	CMSChargeHandle_Base::CanGetProdlesspre (void) const
	Check if it is safe to call GetProdlesspre method. More...
void	CMSChargeHandle_Base::ResetProdlesspre (void)
	Reset Prodlesspre data member. More...
TProdlesspre	CMSChargeHandle_Base::GetProdlesspre (void) const
	Get the Prodlesspre member data. More...
void	CMSChargeHandle_Base::SetProdlesspre (TProdlesspre value)
	Assign a value to Prodlesspre data member. More...
TProdlesspre &	CMSChargeHandle_Base::SetProdlesspre (void)
	Assign a value to Prodlesspre data member. More...
bool	CMSChargeHandle_Base::IsSetNegative (void) const
	negative ion search if -1, positive ion if 1 Check if a value has been assigned to Negative data member. More...
bool	CMSChargeHandle_Base::CanGetNegative (void) const
	Check if it is safe to call GetNegative method. More...
void	CMSChargeHandle_Base::ResetNegative (void)
	Reset Negative data member. More...
void	CMSChargeHandle_Base::SetDefaultNegative (void)
	Assign default value to Negative data member. More...
TNegative	CMSChargeHandle_Base::GetNegative (void) const
	Get the Negative member data. More...
void	CMSChargeHandle_Base::SetNegative (TNegative value)
	Assign a value to Negative data member. More...
TNegative &	CMSChargeHandle_Base::SetNegative (void)
	Assign a value to Negative data member. More...
virtual void	CMSChargeHandle_Base::Reset (void)
	Reset the whole object. More...
	CMSChargeHandle_Base::CMSChargeHandle_Base (const CMSChargeHandle_Base &)
CMSChargeHandle_Base &	CMSChargeHandle_Base::operator= (const CMSChargeHandle_Base &)
	CMSHits_Base::CMSHits_Base (void)
virtual	CMSHits_Base::~CMSHits_Base (void)
	CMSHits_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSHits_Base::IsSetEvalue (void) const
	E-value (expect value) Check if a value has been assigned to Evalue data member. More...
bool	CMSHits_Base::CanGetEvalue (void) const
	Check if it is safe to call GetEvalue method. More...
void	CMSHits_Base::ResetEvalue (void)
	Reset Evalue data member. More...
TEvalue	CMSHits_Base::GetEvalue (void) const
	Get the Evalue member data. More...
void	CMSHits_Base::SetEvalue (TEvalue value)
	Assign a value to Evalue data member. More...
TEvalue &	CMSHits_Base::SetEvalue (void)
	Assign a value to Evalue data member. More...
bool	CMSHits_Base::IsSetPvalue (void) const
	P-value (probability value) Check if a value has been assigned to Pvalue data member. More...
bool	CMSHits_Base::CanGetPvalue (void) const
	Check if it is safe to call GetPvalue method. More...
void	CMSHits_Base::ResetPvalue (void)
	Reset Pvalue data member. More...
TPvalue	CMSHits_Base::GetPvalue (void) const
	Get the Pvalue member data. More...
void	CMSHits_Base::SetPvalue (TPvalue value)
	Assign a value to Pvalue data member. More...
TPvalue &	CMSHits_Base::SetPvalue (void)
	Assign a value to Pvalue data member. More...
bool	CMSHits_Base::IsSetCharge (void) const
	the charge state used in search. More...
bool	CMSHits_Base::CanGetCharge (void) const
	Check if it is safe to call GetCharge method. More...
void	CMSHits_Base::ResetCharge (void)
	Reset Charge data member. More...
TCharge	CMSHits_Base::GetCharge (void) const
	Get the Charge member data. More...
void	CMSHits_Base::SetCharge (TCharge value)
	Assign a value to Charge data member. More...
TCharge &	CMSHits_Base::SetCharge (void)
	Assign a value to Charge data member. More...
bool	CMSHits_Base::IsSetPephits (void) const
	peptides that match this hit Check if a value has been assigned to Pephits data member. More...
bool	CMSHits_Base::CanGetPephits (void) const
	Check if it is safe to call GetPephits method. More...
void	CMSHits_Base::ResetPephits (void)
	Reset Pephits data member. More...
const TPephits &	CMSHits_Base::GetPephits (void) const
	Get the Pephits member data. More...
TPephits &	CMSHits_Base::SetPephits (void)
	Assign a value to Pephits data member. More...
bool	CMSHits_Base::IsSetMzhits (void) const
	ions hit Check if a value has been assigned to Mzhits data member. More...
bool	CMSHits_Base::CanGetMzhits (void) const
	Check if it is safe to call GetMzhits method. More...
void	CMSHits_Base::ResetMzhits (void)
	Reset Mzhits data member. More...
const TMzhits &	CMSHits_Base::GetMzhits (void) const
	Get the Mzhits member data. More...
TMzhits &	CMSHits_Base::SetMzhits (void)
	Assign a value to Mzhits data member. More...
bool	CMSHits_Base::IsSetPepstring (void) const
	the peptide sequence Check if a value has been assigned to Pepstring data member. More...
bool	CMSHits_Base::CanGetPepstring (void) const
	Check if it is safe to call GetPepstring method. More...
void	CMSHits_Base::ResetPepstring (void)
	Reset Pepstring data member. More...
const TPepstring &	CMSHits_Base::GetPepstring (void) const
	Get the Pepstring member data. More...
void	CMSHits_Base::SetPepstring (const TPepstring &value)
	Assign a value to Pepstring data member. More...
void	CMSHits_Base::SetPepstring (TPepstring &&value)
TPepstring &	CMSHits_Base::SetPepstring (void)
	Assign a value to Pepstring data member. More...
bool	CMSHits_Base::IsSetMass (void) const
	scaled experimental mass of peptide in Da Check if a value has been assigned to Mass data member. More...
bool	CMSHits_Base::CanGetMass (void) const
	Check if it is safe to call GetMass method. More...
void	CMSHits_Base::ResetMass (void)
	Reset Mass data member. More...
TMass	CMSHits_Base::GetMass (void) const
	Get the Mass member data. More...
void	CMSHits_Base::SetMass (TMass value)
	Assign a value to Mass data member. More...
TMass &	CMSHits_Base::SetMass (void)
	Assign a value to Mass data member. More...
bool	CMSHits_Base::IsSetMods (void) const
	modifications to sequence Check if a value has been assigned to Mods data member. More...
bool	CMSHits_Base::CanGetMods (void) const
	Check if it is safe to call GetMods method. More...
void	CMSHits_Base::ResetMods (void)
	Reset Mods data member. More...
const TMods &	CMSHits_Base::GetMods (void) const
	Get the Mods member data. More...
TMods &	CMSHits_Base::SetMods (void)
	Assign a value to Mods data member. More...
bool	CMSHits_Base::IsSetPepstart (void) const
	AA before the peptide (depricated) Check if a value has been assigned to Pepstart data member. More...
bool	CMSHits_Base::CanGetPepstart (void) const
	Check if it is safe to call GetPepstart method. More...
void	CMSHits_Base::ResetPepstart (void)
	Reset Pepstart data member. More...
const TPepstart &	CMSHits_Base::GetPepstart (void) const
	Get the Pepstart member data. More...
void	CMSHits_Base::SetPepstart (const TPepstart &value)
	Assign a value to Pepstart data member. More...
void	CMSHits_Base::SetPepstart (TPepstart &&value)
TPepstart &	CMSHits_Base::SetPepstart (void)
	Assign a value to Pepstart data member. More...
bool	CMSHits_Base::IsSetPepstop (void) const
	AA after the peptide (depricated) Check if a value has been assigned to Pepstop data member. More...
bool	CMSHits_Base::CanGetPepstop (void) const
	Check if it is safe to call GetPepstop method. More...
void	CMSHits_Base::ResetPepstop (void)
	Reset Pepstop data member. More...
const TPepstop &	CMSHits_Base::GetPepstop (void) const
	Get the Pepstop member data. More...
void	CMSHits_Base::SetPepstop (const TPepstop &value)
	Assign a value to Pepstop data member. More...
void	CMSHits_Base::SetPepstop (TPepstop &&value)
TPepstop &	CMSHits_Base::SetPepstop (void)
	Assign a value to Pepstop data member. More...
bool	CMSHits_Base::IsSetProtlength (void) const
	length of protein hit (depricated) Check if a value has been assigned to Protlength data member. More...
bool	CMSHits_Base::CanGetProtlength (void) const
	Check if it is safe to call GetProtlength method. More...
void	CMSHits_Base::ResetProtlength (void)
	Reset Protlength data member. More...
TProtlength	CMSHits_Base::GetProtlength (void) const
	Get the Protlength member data. More...
void	CMSHits_Base::SetProtlength (TProtlength value)
	Assign a value to Protlength data member. More...
TProtlength &	CMSHits_Base::SetProtlength (void)
	Assign a value to Protlength data member. More...
bool	CMSHits_Base::IsSetTheomass (void) const
	scaled theoretical mass of peptide hit Check if a value has been assigned to Theomass data member. More...
bool	CMSHits_Base::CanGetTheomass (void) const
	Check if it is safe to call GetTheomass method. More...
void	CMSHits_Base::ResetTheomass (void)
	Reset Theomass data member. More...
TTheomass	CMSHits_Base::GetTheomass (void) const
	Get the Theomass member data. More...
void	CMSHits_Base::SetTheomass (TTheomass value)
	Assign a value to Theomass data member. More...
TTheomass &	CMSHits_Base::SetTheomass (void)
	Assign a value to Theomass data member. More...
bool	CMSHits_Base::IsSetOid (void) const
	blast library oid (depricated) Check if a value has been assigned to Oid data member. More...
bool	CMSHits_Base::CanGetOid (void) const
	Check if it is safe to call GetOid method. More...
void	CMSHits_Base::ResetOid (void)
	Reset Oid data member. More...
TOid	CMSHits_Base::GetOid (void) const
	Get the Oid member data. More...
void	CMSHits_Base::SetOid (TOid value)
	Assign a value to Oid data member. More...
TOid &	CMSHits_Base::SetOid (void)
	Assign a value to Oid data member. More...
bool	CMSHits_Base::IsSetScores (void) const
	optional scores (for library search) Check if a value has been assigned to Scores data member. More...
bool	CMSHits_Base::CanGetScores (void) const
	Check if it is safe to call GetScores method. More...
void	CMSHits_Base::ResetScores (void)
	Reset Scores data member. More...
const TScores &	CMSHits_Base::GetScores (void) const
	Get the Scores member data. More...
TScores &	CMSHits_Base::SetScores (void)
	Assign a value to Scores data member. More...
bool	CMSHits_Base::IsSetLibaccession (void) const
	library search accesssion Check if a value has been assigned to Libaccession data member. More...
bool	CMSHits_Base::CanGetLibaccession (void) const
	Check if it is safe to call GetLibaccession method. More...
void	CMSHits_Base::ResetLibaccession (void)
	Reset Libaccession data member. More...
const TLibaccession &	CMSHits_Base::GetLibaccession (void) const
	Get the Libaccession member data. More...
void	CMSHits_Base::SetLibaccession (const TLibaccession &value)
	Assign a value to Libaccession data member. More...
void	CMSHits_Base::SetLibaccession (TLibaccession &&value)
TLibaccession &	CMSHits_Base::SetLibaccession (void)
	Assign a value to Libaccession data member. More...
virtual void	CMSHits_Base::Reset (void)
	Reset the whole object. More...
	CMSHits_Base::CMSHits_Base (const CMSHits_Base &)
CMSHits_Base &	CMSHits_Base::operator= (const CMSHits_Base &)
	CMSHitSet::CMSHitSet (void)
	CMSHitSet::~CMSHitSet (void)
	CMSHitSet::CMSHitSet (const CMSHitSet &value)
CMSHitSet &	CMSHitSet::operator= (const CMSHitSet &value)
	CMSHitSet_Base::CMSHitSet_Base (void)
virtual	CMSHitSet_Base::~CMSHitSet_Base (void)
	CMSHitSet_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSHitSet_Base::IsSetNumber (void) const
	unique number of spectrum Check if a value has been assigned to Number data member. More...
bool	CMSHitSet_Base::CanGetNumber (void) const
	Check if it is safe to call GetNumber method. More...
void	CMSHitSet_Base::ResetNumber (void)
	Reset Number data member. More...
TNumber	CMSHitSet_Base::GetNumber (void) const
	Get the Number member data. More...
void	CMSHitSet_Base::SetNumber (TNumber value)
	Assign a value to Number data member. More...
TNumber &	CMSHitSet_Base::SetNumber (void)
	Assign a value to Number data member. More...
bool	CMSHitSet_Base::IsSetError (void) const
	error, if any Check if a value has been assigned to Error data member. More...
bool	CMSHitSet_Base::CanGetError (void) const
	Check if it is safe to call GetError method. More...
void	CMSHitSet_Base::ResetError (void)
	Reset Error data member. More...
TError	CMSHitSet_Base::GetError (void) const
	Get the Error member data. More...
void	CMSHitSet_Base::SetError (TError value)
	Assign a value to Error data member. More...
TError &	CMSHitSet_Base::SetError (void)
	Assign a value to Error data member. More...
bool	CMSHitSet_Base::IsSetHits (void) const
	set of hit to spectrum Check if a value has been assigned to Hits data member. More...
bool	CMSHitSet_Base::CanGetHits (void) const
	Check if it is safe to call GetHits method. More...
void	CMSHitSet_Base::ResetHits (void)
	Reset Hits data member. More...
const THits &	CMSHitSet_Base::GetHits (void) const
	Get the Hits member data. More...
THits &	CMSHitSet_Base::SetHits (void)
	Assign a value to Hits data member. More...
bool	CMSHitSet_Base::IsSetIds (void) const
	filenames or other ids of spectra searched Check if a value has been assigned to Ids data member. More...
bool	CMSHitSet_Base::CanGetIds (void) const
	Check if it is safe to call GetIds method. More...
void	CMSHitSet_Base::ResetIds (void)
	Reset Ids data member. More...
const TIds &	CMSHitSet_Base::GetIds (void) const
	Get the Ids member data. More...
TIds &	CMSHitSet_Base::SetIds (void)
	Assign a value to Ids data member. More...
bool	CMSHitSet_Base::IsSetNamevalue (void) const
	extra info: retention times, etc. More...
bool	CMSHitSet_Base::CanGetNamevalue (void) const
	Check if it is safe to call GetNamevalue method. More...
void	CMSHitSet_Base::ResetNamevalue (void)
	Reset Namevalue data member. More...
const TNamevalue &	CMSHitSet_Base::GetNamevalue (void) const
	Get the Namevalue member data. More...
TNamevalue &	CMSHitSet_Base::SetNamevalue (void)
	Assign a value to Namevalue data member. More...
bool	CMSHitSet_Base::IsSetSettingid (void) const
	id of the search setting used Check if a value has been assigned to Settingid data member. More...
bool	CMSHitSet_Base::CanGetSettingid (void) const
	Check if it is safe to call GetSettingid method. More...
void	CMSHitSet_Base::ResetSettingid (void)
	Reset Settingid data member. More...
TSettingid	CMSHitSet_Base::GetSettingid (void) const
	Get the Settingid member data. More...
void	CMSHitSet_Base::SetSettingid (TSettingid value)
	Assign a value to Settingid data member. More...
TSettingid &	CMSHitSet_Base::SetSettingid (void)
	Assign a value to Settingid data member. More...
bool	CMSHitSet_Base::IsSetUserannotation (void) const
	allows users to flag certain Check if a value has been assigned to Userannotation data member. More...
bool	CMSHitSet_Base::CanGetUserannotation (void) const
	Check if it is safe to call GetUserannotation method. More...
void	CMSHitSet_Base::ResetUserannotation (void)
	Reset Userannotation data member. More...
TUserannotation	CMSHitSet_Base::GetUserannotation (void) const
	Get the Userannotation member data. More...
void	CMSHitSet_Base::SetUserannotation (TUserannotation value)
	Assign a value to Userannotation data member. More...
TUserannotation &	CMSHitSet_Base::SetUserannotation (void)
	Assign a value to Userannotation data member. More...
virtual void	CMSHitSet_Base::Reset (void)
	Reset the whole object. More...
	CMSHitSet_Base::CMSHitSet_Base (const CMSHitSet_Base &)
CMSHitSet_Base &	CMSHitSet_Base::operator= (const CMSHitSet_Base &)
	CMSImmonium::CMSImmonium (void)
	CMSImmonium::~CMSImmonium (void)
	CMSImmonium::CMSImmonium (const CMSImmonium &value)
CMSImmonium &	CMSImmonium::operator= (const CMSImmonium &value)
	CMSImmonium_Base::CMSImmonium_Base (void)
virtual	CMSImmonium_Base::~CMSImmonium_Base (void)
	CMSImmonium_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSImmonium_Base::IsSetParent (void) const
	parent amino acid Check if a value has been assigned to Parent data member. More...
bool	CMSImmonium_Base::CanGetParent (void) const
	Check if it is safe to call GetParent method. More...
void	CMSImmonium_Base::ResetParent (void)
	Reset Parent data member. More...
const TParent &	CMSImmonium_Base::GetParent (void) const
	Get the Parent member data. More...
void	CMSImmonium_Base::SetParent (const TParent &value)
	Assign a value to Parent data member. More...
void	CMSImmonium_Base::SetParent (TParent &&value)
TParent &	CMSImmonium_Base::SetParent (void)
	Assign a value to Parent data member. More...
bool	CMSImmonium_Base::IsSetProduct (void) const
	product ion code Check if a value has been assigned to Product data member. More...
bool	CMSImmonium_Base::CanGetProduct (void) const
	Check if it is safe to call GetProduct method. More...
void	CMSImmonium_Base::ResetProduct (void)
	Reset Product data member. More...
const TProduct &	CMSImmonium_Base::GetProduct (void) const
	Get the Product member data. More...
void	CMSImmonium_Base::SetProduct (const TProduct &value)
	Assign a value to Product data member. More...
void	CMSImmonium_Base::SetProduct (TProduct &&value)
TProduct &	CMSImmonium_Base::SetProduct (void)
	Assign a value to Product data member. More...
virtual void	CMSImmonium_Base::Reset (void)
	Reset the whole object. More...
	CMSImmonium_Base::CMSImmonium_Base (const CMSImmonium_Base &)
CMSImmonium_Base &	CMSImmonium_Base::operator= (const CMSImmonium_Base &)
	CMSInFile::CMSInFile (void)
	CMSInFile::~CMSInFile (void)
	CMSInFile::CMSInFile (const CMSInFile &value)
CMSInFile &	CMSInFile::operator= (const CMSInFile &value)
	CMSInFile_Base::CMSInFile_Base (void)
virtual	CMSInFile_Base::~CMSInFile_Base (void)
	CMSInFile_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSInFile_Base::IsSetInfile (void) const
	input file name Check if a value has been assigned to Infile data member. More...
bool	CMSInFile_Base::CanGetInfile (void) const
	Check if it is safe to call GetInfile method. More...
void	CMSInFile_Base::ResetInfile (void)
	Reset Infile data member. More...
const TInfile &	CMSInFile_Base::GetInfile (void) const
	Get the Infile member data. More...
void	CMSInFile_Base::SetInfile (const TInfile &value)
	Assign a value to Infile data member. More...
void	CMSInFile_Base::SetInfile (TInfile &&value)
TInfile &	CMSInFile_Base::SetInfile (void)
	Assign a value to Infile data member. More...
bool	CMSInFile_Base::IsSetInfiletype (void) const
	input file type Check if a value has been assigned to Infiletype data member. More...
bool	CMSInFile_Base::CanGetInfiletype (void) const
	Check if it is safe to call GetInfiletype method. More...
void	CMSInFile_Base::ResetInfiletype (void)
	Reset Infiletype data member. More...
TInfiletype	CMSInFile_Base::GetInfiletype (void) const
	Get the Infiletype member data. More...
void	CMSInFile_Base::SetInfiletype (TInfiletype value)
	Assign a value to Infiletype data member. More...
TInfiletype &	CMSInFile_Base::SetInfiletype (void)
	Assign a value to Infiletype data member. More...
virtual void	CMSInFile_Base::Reset (void)
	Reset the whole object. More...
	CMSInFile_Base::CMSInFile_Base (const CMSInFile_Base &)
CMSInFile_Base &	CMSInFile_Base::operator= (const CMSInFile_Base &)
	CMSIon::CMSIon (void)
	CMSIon::~CMSIon (void)
	CMSIon::CMSIon (const CMSIon &value)
CMSIon &	CMSIon::operator= (const CMSIon &value)
	CMSIon_Base::CMSIon_Base (void)
virtual	CMSIon_Base::~CMSIon_Base (void)
	CMSIon_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSIon_Base::IsSetNeutralloss (void) const
	is this peak a neutral loss? Check if a value has been assigned to Neutralloss data member. More...
bool	CMSIon_Base::CanGetNeutralloss (void) const
	Check if it is safe to call GetNeutralloss method. More...
void	CMSIon_Base::ResetNeutralloss (void)
	Reset Neutralloss data member. More...
TNeutralloss	CMSIon_Base::GetNeutralloss (void) const
	Get the Neutralloss member data. More...
void	CMSIon_Base::SetNeutralloss (TNeutralloss value)
	Assign a value to Neutralloss data member. More...
TNeutralloss &	CMSIon_Base::SetNeutralloss (void)
	Assign a value to Neutralloss data member. More...
bool	CMSIon_Base::IsSetIsotope (void) const
	isotopic composition of peak Check if a value has been assigned to Isotope data member. More...
bool	CMSIon_Base::CanGetIsotope (void) const
	Check if it is safe to call GetIsotope method. More...
void	CMSIon_Base::ResetIsotope (void)
	Reset Isotope data member. More...
TIsotope	CMSIon_Base::GetIsotope (void) const
	Get the Isotope member data. More...
void	CMSIon_Base::SetIsotope (TIsotope value)
	Assign a value to Isotope data member. More...
TIsotope &	CMSIon_Base::SetIsotope (void)
	Assign a value to Isotope data member. More...
bool	CMSIon_Base::IsSetInternal (void) const
	if iontype is internal, this is the internal sequence Check if a value has been assigned to Internal data member. More...
bool	CMSIon_Base::CanGetInternal (void) const
	Check if it is safe to call GetInternal method. More...
void	CMSIon_Base::ResetInternal (void)
	Reset Internal data member. More...
const TInternal &	CMSIon_Base::GetInternal (void) const
	Get the Internal member data. More...
void	CMSIon_Base::SetInternal (const TInternal &value)
	Assign a value to Internal data member. More...
void	CMSIon_Base::SetInternal (TInternal &&value)
TInternal &	CMSIon_Base::SetInternal (void)
	Assign a value to Internal data member. More...
bool	CMSIon_Base::IsSetImmonium (void) const
	if iontype is immonium, show characteristics Check if a value has been assigned to Immonium data member. More...
bool	CMSIon_Base::CanGetImmonium (void) const
	Check if it is safe to call GetImmonium method. More...
void	CMSIon_Base::ResetImmonium (void)
	Reset Immonium data member. More...
const TImmonium &	CMSIon_Base::GetImmonium (void) const
	Get the Immonium member data. More...
void	CMSIon_Base::SetImmonium (TImmonium &value)
	Assign a value to Immonium data member. More...
TImmonium &	CMSIon_Base::SetImmonium (void)
	Assign a value to Immonium data member. More...
virtual void	CMSIon_Base::Reset (void)
	Reset the whole object. More...
	CMSIon_Base::CMSIon_Base (const CMSIon_Base &)
CMSIon_Base &	CMSIon_Base::operator= (const CMSIon_Base &)
	CMSIonAnnot::CMSIonAnnot (void)
	CMSIonAnnot::~CMSIonAnnot (void)
	CMSIonAnnot::CMSIonAnnot (const CMSIonAnnot &value)
CMSIonAnnot &	CMSIonAnnot::operator= (const CMSIonAnnot &value)
	CMSIonAnnot_Base::CMSIonAnnot_Base (void)
virtual	CMSIonAnnot_Base::~CMSIonAnnot_Base (void)
	CMSIonAnnot_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSIonAnnot_Base::IsSetSuspect (void) const
	is this peak suspect? Check if a value has been assigned to Suspect data member. More...
bool	CMSIonAnnot_Base::CanGetSuspect (void) const
	Check if it is safe to call GetSuspect method. More...
void	CMSIonAnnot_Base::ResetSuspect (void)
	Reset Suspect data member. More...
TSuspect	CMSIonAnnot_Base::GetSuspect (void) const
	Get the Suspect member data. More...
void	CMSIonAnnot_Base::SetSuspect (TSuspect value)
	Assign a value to Suspect data member. More...
TSuspect &	CMSIonAnnot_Base::SetSuspect (void)
	Assign a value to Suspect data member. More...
bool	CMSIonAnnot_Base::IsSetMassdiff (void) const
	what is the difference in mass from library spectrum? Check if a value has been assigned to Massdiff data member. More...
bool	CMSIonAnnot_Base::CanGetMassdiff (void) const
	Check if it is safe to call GetMassdiff method. More...
void	CMSIonAnnot_Base::ResetMassdiff (void)
	Reset Massdiff data member. More...
TMassdiff	CMSIonAnnot_Base::GetMassdiff (void) const
	Get the Massdiff member data. More...
void	CMSIonAnnot_Base::SetMassdiff (TMassdiff value)
	Assign a value to Massdiff data member. More...
TMassdiff &	CMSIonAnnot_Base::SetMassdiff (void)
	Assign a value to Massdiff data member. More...
bool	CMSIonAnnot_Base::IsSetMissingisotope (void) const
	are the lower mass peaks missing? Check if a value has been assigned to Missingisotope data member. More...
bool	CMSIonAnnot_Base::CanGetMissingisotope (void) const
	Check if it is safe to call GetMissingisotope method. More...
void	CMSIonAnnot_Base::ResetMissingisotope (void)
	Reset Missingisotope data member. More...
TMissingisotope	CMSIonAnnot_Base::GetMissingisotope (void) const
	Get the Missingisotope member data. More...
void	CMSIonAnnot_Base::SetMissingisotope (TMissingisotope value)
	Assign a value to Missingisotope data member. More...
TMissingisotope &	CMSIonAnnot_Base::SetMissingisotope (void)
	Assign a value to Missingisotope data member. More...
virtual void	CMSIonAnnot_Base::Reset (void)
	Reset the whole object. More...
	CMSIonAnnot_Base::CMSIonAnnot_Base (const CMSIonAnnot_Base &)
CMSIonAnnot_Base &	CMSIonAnnot_Base::operator= (const CMSIonAnnot_Base &)
	CMSIterativeSettings::CMSIterativeSettings (void)
	CMSIterativeSettings::~CMSIterativeSettings (void)
	CMSIterativeSettings::CMSIterativeSettings (const CMSIterativeSettings &value)
CMSIterativeSettings &	CMSIterativeSettings::operator= (const CMSIterativeSettings &value)
	CMSIterativeSettings_Base::CMSIterativeSettings_Base (void)
virtual	CMSIterativeSettings_Base::~CMSIterativeSettings_Base (void)
	CMSIterativeSettings_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSIterativeSettings_Base::IsSetResearchthresh (void) const
	e-val threshold for re-searching spectra, 0 = always re-search Check if a value has been assigned to Researchthresh data member. More...
bool	CMSIterativeSettings_Base::CanGetResearchthresh (void) const
	Check if it is safe to call GetResearchthresh method. More...
void	CMSIterativeSettings_Base::ResetResearchthresh (void)
	Reset Researchthresh data member. More...
TResearchthresh	CMSIterativeSettings_Base::GetResearchthresh (void) const
	Get the Researchthresh member data. More...
void	CMSIterativeSettings_Base::SetResearchthresh (TResearchthresh value)
	Assign a value to Researchthresh data member. More...
TResearchthresh &	CMSIterativeSettings_Base::SetResearchthresh (void)
	Assign a value to Researchthresh data member. More...
bool	CMSIterativeSettings_Base::IsSetSubsetthresh (void) const
	e-val threshold for picking sequence subset, 0 = all sequences Check if a value has been assigned to Subsetthresh data member. More...
bool	CMSIterativeSettings_Base::CanGetSubsetthresh (void) const
	Check if it is safe to call GetSubsetthresh method. More...
void	CMSIterativeSettings_Base::ResetSubsetthresh (void)
	Reset Subsetthresh data member. More...
TSubsetthresh	CMSIterativeSettings_Base::GetSubsetthresh (void) const
	Get the Subsetthresh member data. More...
void	CMSIterativeSettings_Base::SetSubsetthresh (TSubsetthresh value)
	Assign a value to Subsetthresh data member. More...
TSubsetthresh &	CMSIterativeSettings_Base::SetSubsetthresh (void)
	Assign a value to Subsetthresh data member. More...
bool	CMSIterativeSettings_Base::IsSetReplacethresh (void) const
	e-val threshold for replacing hitset, 0 = only if better Check if a value has been assigned to Replacethresh data member. More...
bool	CMSIterativeSettings_Base::CanGetReplacethresh (void) const
	Check if it is safe to call GetReplacethresh method. More...
void	CMSIterativeSettings_Base::ResetReplacethresh (void)
	Reset Replacethresh data member. More...
TReplacethresh	CMSIterativeSettings_Base::GetReplacethresh (void) const
	Get the Replacethresh member data. More...
void	CMSIterativeSettings_Base::SetReplacethresh (TReplacethresh value)
	Assign a value to Replacethresh data member. More...
TReplacethresh &	CMSIterativeSettings_Base::SetReplacethresh (void)
	Assign a value to Replacethresh data member. More...
virtual void	CMSIterativeSettings_Base::Reset (void)
	Reset the whole object. More...
	CMSIterativeSettings_Base::CMSIterativeSettings_Base (const CMSIterativeSettings_Base &)
CMSIterativeSettings_Base &	CMSIterativeSettings_Base::operator= (const CMSIterativeSettings_Base &)
	CMSLibrarySettings::CMSLibrarySettings (void)
	CMSLibrarySettings::~CMSLibrarySettings (void)
	CMSLibrarySettings::CMSLibrarySettings (const CMSLibrarySettings &value)
CMSLibrarySettings &	CMSLibrarySettings::operator= (const CMSLibrarySettings &value)
	CMSLibrarySettings_Base::CMSLibrarySettings_Base (void)
virtual	CMSLibrarySettings_Base::~CMSLibrarySettings_Base (void)
	CMSLibrarySettings_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSLibrarySettings_Base::IsSetLibnames (void) const
	names of search libraries Check if a value has been assigned to Libnames data member. More...
bool	CMSLibrarySettings_Base::CanGetLibnames (void) const
	Check if it is safe to call GetLibnames method. More...
void	CMSLibrarySettings_Base::ResetLibnames (void)
	Reset Libnames data member. More...
const TLibnames &	CMSLibrarySettings_Base::GetLibnames (void) const
	Get the Libnames member data. More...
TLibnames &	CMSLibrarySettings_Base::SetLibnames (void)
	Assign a value to Libnames data member. More...
bool	CMSLibrarySettings_Base::IsSetPresearch (void) const
	should there be a restriction on precursor mass? Check if a value has been assigned to Presearch data member. More...
bool	CMSLibrarySettings_Base::CanGetPresearch (void) const
	Check if it is safe to call GetPresearch method. More...
void	CMSLibrarySettings_Base::ResetPresearch (void)
	Reset Presearch data member. More...
TPresearch	CMSLibrarySettings_Base::GetPresearch (void) const
	Get the Presearch member data. More...
void	CMSLibrarySettings_Base::SetPresearch (TPresearch value)
	Assign a value to Presearch data member. More...
TPresearch &	CMSLibrarySettings_Base::SetPresearch (void)
	Assign a value to Presearch data member. More...
bool	CMSLibrarySettings_Base::IsSetUseomssascore (void) const
	use the omssa score? Check if a value has been assigned to Useomssascore data member. More...
bool	CMSLibrarySettings_Base::CanGetUseomssascore (void) const
	Check if it is safe to call GetUseomssascore method. More...
void	CMSLibrarySettings_Base::ResetUseomssascore (void)
	Reset Useomssascore data member. More...
TUseomssascore	CMSLibrarySettings_Base::GetUseomssascore (void) const
	Get the Useomssascore member data. More...
void	CMSLibrarySettings_Base::SetUseomssascore (TUseomssascore value)
	Assign a value to Useomssascore data member. More...
TUseomssascore &	CMSLibrarySettings_Base::SetUseomssascore (void)
	Assign a value to Useomssascore data member. More...
bool	CMSLibrarySettings_Base::IsSetUsereplicatescore (void) const
	use the number of replicates score? Check if a value has been assigned to Usereplicatescore data member. More...
bool	CMSLibrarySettings_Base::CanGetUsereplicatescore (void) const
	Check if it is safe to call GetUsereplicatescore method. More...
void	CMSLibrarySettings_Base::ResetUsereplicatescore (void)
	Reset Usereplicatescore data member. More...
TUsereplicatescore	CMSLibrarySettings_Base::GetUsereplicatescore (void) const
	Get the Usereplicatescore member data. More...
void	CMSLibrarySettings_Base::SetUsereplicatescore (TUsereplicatescore value)
	Assign a value to Usereplicatescore data member. More...
TUsereplicatescore &	CMSLibrarySettings_Base::SetUsereplicatescore (void)
	Assign a value to Usereplicatescore data member. More...
bool	CMSLibrarySettings_Base::IsSetQtofscore (void) const
	use the qtof score? Check if a value has been assigned to Qtofscore data member. More...
bool	CMSLibrarySettings_Base::CanGetQtofscore (void) const
	Check if it is safe to call GetQtofscore method. More...
void	CMSLibrarySettings_Base::ResetQtofscore (void)
	Reset Qtofscore data member. More...
TQtofscore	CMSLibrarySettings_Base::GetQtofscore (void) const
	Get the Qtofscore member data. More...
void	CMSLibrarySettings_Base::SetQtofscore (TQtofscore value)
	Assign a value to Qtofscore data member. More...
TQtofscore &	CMSLibrarySettings_Base::SetQtofscore (void)
	Assign a value to Qtofscore data member. More...
virtual void	CMSLibrarySettings_Base::Reset (void)
	Reset the whole object. More...
	CMSLibrarySettings_Base::CMSLibrarySettings_Base (const CMSLibrarySettings_Base &)
CMSLibrarySettings_Base &	CMSLibrarySettings_Base::operator= (const CMSLibrarySettings_Base &)
	CMSMassSet::CMSMassSet (void)
	CMSMassSet::~CMSMassSet (void)
	CMSMassSet::CMSMassSet (const CMSMassSet &value)
CMSMassSet &	CMSMassSet::operator= (const CMSMassSet &value)
	CMSMassSet_Base::CMSMassSet_Base (void)
virtual	CMSMassSet_Base::~CMSMassSet_Base (void)
	CMSMassSet_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSMassSet_Base::IsSetMonomass (void) const
	Check if a value has been assigned to Monomass data member. More...
bool	CMSMassSet_Base::CanGetMonomass (void) const
	Check if it is safe to call GetMonomass method. More...
void	CMSMassSet_Base::ResetMonomass (void)
	Reset Monomass data member. More...
TMonomass	CMSMassSet_Base::GetMonomass (void) const
	Get the Monomass member data. More...
void	CMSMassSet_Base::SetMonomass (TMonomass value)
	Assign a value to Monomass data member. More...
TMonomass &	CMSMassSet_Base::SetMonomass (void)
	Assign a value to Monomass data member. More...
bool	CMSMassSet_Base::IsSetAveragemass (void) const
	Check if a value has been assigned to Averagemass data member. More...
bool	CMSMassSet_Base::CanGetAveragemass (void) const
	Check if it is safe to call GetAveragemass method. More...
void	CMSMassSet_Base::ResetAveragemass (void)
	Reset Averagemass data member. More...
TAveragemass	CMSMassSet_Base::GetAveragemass (void) const
	Get the Averagemass member data. More...
void	CMSMassSet_Base::SetAveragemass (TAveragemass value)
	Assign a value to Averagemass data member. More...
TAveragemass &	CMSMassSet_Base::SetAveragemass (void)
	Assign a value to Averagemass data member. More...
bool	CMSMassSet_Base::IsSetN15mass (void) const
	Check if a value has been assigned to N15mass data member. More...
bool	CMSMassSet_Base::CanGetN15mass (void) const
	Check if it is safe to call GetN15mass method. More...
void	CMSMassSet_Base::ResetN15mass (void)
	Reset N15mass data member. More...
TN15mass	CMSMassSet_Base::GetN15mass (void) const
	Get the N15mass member data. More...
void	CMSMassSet_Base::SetN15mass (TN15mass value)
	Assign a value to N15mass data member. More...
TN15mass &	CMSMassSet_Base::SetN15mass (void)
	Assign a value to N15mass data member. More...
virtual void	CMSMassSet_Base::Reset (void)
	Reset the whole object. More...
	CMSMassSet_Base::CMSMassSet_Base (const CMSMassSet_Base &)
CMSMassSet_Base &	CMSMassSet_Base::operator= (const CMSMassSet_Base &)
	CMSModHit::CMSModHit (void)
	CMSModHit::~CMSModHit (void)
	CMSModHit::CMSModHit (const CMSModHit &value)
CMSModHit &	CMSModHit::operator= (const CMSModHit &value)
	CMSModHit_Base::CMSModHit_Base (void)
virtual	CMSModHit_Base::~CMSModHit_Base (void)
	CMSModHit_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSModHit_Base::IsSetSite (void) const
	the position in the peptide Check if a value has been assigned to Site data member. More...
bool	CMSModHit_Base::CanGetSite (void) const
	Check if it is safe to call GetSite method. More...
void	CMSModHit_Base::ResetSite (void)
	Reset Site data member. More...
TSite	CMSModHit_Base::GetSite (void) const
	Get the Site member data. More...
void	CMSModHit_Base::SetSite (TSite value)
	Assign a value to Site data member. More...
TSite &	CMSModHit_Base::SetSite (void)
	Assign a value to Site data member. More...
bool	CMSModHit_Base::IsSetModtype (void) const
	the type of modification Check if a value has been assigned to Modtype data member. More...
bool	CMSModHit_Base::CanGetModtype (void) const
	Check if it is safe to call GetModtype method. More...
void	CMSModHit_Base::ResetModtype (void)
	Reset Modtype data member. More...
TModtype	CMSModHit_Base::GetModtype (void) const
	Get the Modtype member data. More...
void	CMSModHit_Base::SetModtype (TModtype value)
	Assign a value to Modtype data member. More...
TModtype &	CMSModHit_Base::SetModtype (void)
	Assign a value to Modtype data member. More...
virtual void	CMSModHit_Base::Reset (void)
	Reset the whole object. More...
	CMSModHit_Base::CMSModHit_Base (const CMSModHit_Base &)
CMSModHit_Base &	CMSModHit_Base::operator= (const CMSModHit_Base &)
	CMSModSpec::CMSModSpec (void)
	CMSModSpec::~CMSModSpec (void)
	CMSModSpec::CMSModSpec (const CMSModSpec &value)
CMSModSpec &	CMSModSpec::operator= (const CMSModSpec &value)
	CMSModSpec_Base::CMSModSpec_Base (void)
virtual	CMSModSpec_Base::~CMSModSpec_Base (void)
	CMSModSpec_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSModSpec_Base::IsSetMod (void) const
	what is the mod Check if a value has been assigned to Mod data member. More...
bool	CMSModSpec_Base::CanGetMod (void) const
	Check if it is safe to call GetMod method. More...
void	CMSModSpec_Base::ResetMod (void)
	Reset Mod data member. More...
TMod	CMSModSpec_Base::GetMod (void) const
	Get the Mod member data. More...
void	CMSModSpec_Base::SetMod (TMod value)
	Assign a value to Mod data member. More...
TMod &	CMSModSpec_Base::SetMod (void)
	Assign a value to Mod data member. More...
bool	CMSModSpec_Base::IsSetType (void) const
	modification type Check if a value has been assigned to Type data member. More...
bool	CMSModSpec_Base::CanGetType (void) const
	Check if it is safe to call GetType method. More...
void	CMSModSpec_Base::ResetType (void)
	Reset Type data member. More...
TType	CMSModSpec_Base::GetType (void) const
	Get the Type member data. More...
void	CMSModSpec_Base::SetType (TType value)
	Assign a value to Type data member. More...
TType &	CMSModSpec_Base::SetType (void)
	Assign a value to Type data member. More...
bool	CMSModSpec_Base::IsSetName (void) const
	friendly name of mod Check if a value has been assigned to Name data member. More...
bool	CMSModSpec_Base::CanGetName (void) const
	Check if it is safe to call GetName method. More...
void	CMSModSpec_Base::ResetName (void)
	Reset Name data member. More...
const TName &	CMSModSpec_Base::GetName (void) const
	Get the Name member data. More...
void	CMSModSpec_Base::SetName (const TName &value)
	Assign a value to Name data member. More...
void	CMSModSpec_Base::SetName (TName &&value)
TName &	CMSModSpec_Base::SetName (void)
	Assign a value to Name data member. More...
bool	CMSModSpec_Base::IsSetMonomass (void) const
	monoisotopic mass Check if a value has been assigned to Monomass data member. More...
bool	CMSModSpec_Base::CanGetMonomass (void) const
	Check if it is safe to call GetMonomass method. More...
void	CMSModSpec_Base::ResetMonomass (void)
	Reset Monomass data member. More...
TMonomass	CMSModSpec_Base::GetMonomass (void) const
	Get the Monomass member data. More...
void	CMSModSpec_Base::SetMonomass (TMonomass value)
	Assign a value to Monomass data member. More...
TMonomass &	CMSModSpec_Base::SetMonomass (void)
	Assign a value to Monomass data member. More...
bool	CMSModSpec_Base::IsSetAveragemass (void) const
	average mass Check if a value has been assigned to Averagemass data member. More...
bool	CMSModSpec_Base::CanGetAveragemass (void) const
	Check if it is safe to call GetAveragemass method. More...
void	CMSModSpec_Base::ResetAveragemass (void)
	Reset Averagemass data member. More...
TAveragemass	CMSModSpec_Base::GetAveragemass (void) const
	Get the Averagemass member data. More...
void	CMSModSpec_Base::SetAveragemass (TAveragemass value)
	Assign a value to Averagemass data member. More...
TAveragemass &	CMSModSpec_Base::SetAveragemass (void)
	Assign a value to Averagemass data member. More...
bool	CMSModSpec_Base::IsSetN15mass (void) const
	monoisotopic n15 mass Check if a value has been assigned to N15mass data member. More...
bool	CMSModSpec_Base::CanGetN15mass (void) const
	Check if it is safe to call GetN15mass method. More...
void	CMSModSpec_Base::ResetN15mass (void)
	Reset N15mass data member. More...
TN15mass	CMSModSpec_Base::GetN15mass (void) const
	Get the N15mass member data. More...
void	CMSModSpec_Base::SetN15mass (TN15mass value)
	Assign a value to N15mass data member. More...
TN15mass &	CMSModSpec_Base::SetN15mass (void)
	Assign a value to N15mass data member. More...
bool	CMSModSpec_Base::IsSetResidues (void) const
	residues to apply mod to Check if a value has been assigned to Residues data member. More...
bool	CMSModSpec_Base::CanGetResidues (void) const
	Check if it is safe to call GetResidues method. More...
void	CMSModSpec_Base::ResetResidues (void)
	Reset Residues data member. More...
const TResidues &	CMSModSpec_Base::GetResidues (void) const
	Get the Residues member data. More...
TResidues &	CMSModSpec_Base::SetResidues (void)
	Assign a value to Residues data member. More...
bool	CMSModSpec_Base::IsSetNeutralloss (void) const
	loss after precursor mass determination Check if a value has been assigned to Neutralloss data member. More...
bool	CMSModSpec_Base::CanGetNeutralloss (void) const
	Check if it is safe to call GetNeutralloss method. More...
void	CMSModSpec_Base::ResetNeutralloss (void)
	Reset Neutralloss data member. More...
const TNeutralloss &	CMSModSpec_Base::GetNeutralloss (void) const
	Get the Neutralloss member data. More...
void	CMSModSpec_Base::SetNeutralloss (TNeutralloss &value)
	Assign a value to Neutralloss data member. More...
TNeutralloss &	CMSModSpec_Base::SetNeutralloss (void)
	Assign a value to Neutralloss data member. More...
bool	CMSModSpec_Base::IsSetUnimod (void) const
	the equivalent Unimod Accession number Check if a value has been assigned to Unimod data member. More...
bool	CMSModSpec_Base::CanGetUnimod (void) const
	Check if it is safe to call GetUnimod method. More...
void	CMSModSpec_Base::ResetUnimod (void)
	Reset Unimod data member. More...
TUnimod	CMSModSpec_Base::GetUnimod (void) const
	Get the Unimod member data. More...
void	CMSModSpec_Base::SetUnimod (TUnimod value)
	Assign a value to Unimod data member. More...
TUnimod &	CMSModSpec_Base::SetUnimod (void)
	Assign a value to Unimod data member. More...
bool	CMSModSpec_Base::IsSetPsi_ms (void) const
	the PSI-MS equivalent name Check if a value has been assigned to Psi_ms data member. More...
bool	CMSModSpec_Base::CanGetPsi_ms (void) const
	Check if it is safe to call GetPsi_ms method. More...
void	CMSModSpec_Base::ResetPsi_ms (void)
	Reset Psi_ms data member. More...
const TPsi_ms &	CMSModSpec_Base::GetPsi_ms (void) const
	Get the Psi_ms member data. More...
void	CMSModSpec_Base::SetPsi_ms (const TPsi_ms &value)
	Assign a value to Psi_ms data member. More...
void	CMSModSpec_Base::SetPsi_ms (TPsi_ms &&value)
TPsi_ms &	CMSModSpec_Base::SetPsi_ms (void)
	Assign a value to Psi_ms data member. More...
virtual void	CMSModSpec_Base::Reset (void)
	Reset the whole object. More...
	CMSModSpec_Base::CMSModSpec_Base (const CMSModSpec_Base &)
CMSModSpec_Base &	CMSModSpec_Base::operator= (const CMSModSpec_Base &)
	CMSModSpecSet_Base::CMSModSpecSet_Base (void)
virtual	CMSModSpecSet_Base::~CMSModSpecSet_Base (void)
	CMSModSpecSet_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSModSpecSet_Base::IsSet (void) const
	Check if a value has been assigned to data member. More...
bool	CMSModSpecSet_Base::CanGet (void) const
	Check if it is safe to call Get method. More...
void	CMSModSpecSet_Base::Reset (void)
	Reset data member. More...
const Tdata &	CMSModSpecSet_Base::Get (void) const
	Get the member data. More...
Tdata &	CMSModSpecSet_Base::Set (void)
	Assign a value to data member. More...
	CMSModSpecSet_Base::operator const Tdata & (void) const
	Conversion operator to 'const Tdata' type. More...
	CMSModSpecSet_Base::operator Tdata & (void)
	Conversion operator to 'Tdata' type. More...
	CMSModSpecSet_Base::CMSModSpecSet_Base (const CMSModSpecSet_Base &)
CMSModSpecSet_Base &	CMSModSpecSet_Base::operator= (const CMSModSpecSet_Base &)
	CMSMZHit::CMSMZHit (void)
	CMSMZHit::~CMSMZHit (void)
	CMSMZHit::CMSMZHit (const CMSMZHit &value)
CMSMZHit &	CMSMZHit::operator= (const CMSMZHit &value)
	CMSMZHit_Base::CMSMZHit_Base (void)
virtual	CMSMZHit_Base::~CMSMZHit_Base (void)
	CMSMZHit_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSMZHit_Base::IsSetIon (void) const
	ion type, e.g. More...
bool	CMSMZHit_Base::CanGetIon (void) const
	Check if it is safe to call GetIon method. More...
void	CMSMZHit_Base::ResetIon (void)
	Reset Ion data member. More...
TIon	CMSMZHit_Base::GetIon (void) const
	Get the Ion member data. More...
void	CMSMZHit_Base::SetIon (TIon value)
	Assign a value to Ion data member. More...
TIon &	CMSMZHit_Base::SetIon (void)
	Assign a value to Ion data member. More...
bool	CMSMZHit_Base::IsSetCharge (void) const
	ion charge Check if a value has been assigned to Charge data member. More...
bool	CMSMZHit_Base::CanGetCharge (void) const
	Check if it is safe to call GetCharge method. More...
void	CMSMZHit_Base::ResetCharge (void)
	Reset Charge data member. More...
TCharge	CMSMZHit_Base::GetCharge (void) const
	Get the Charge member data. More...
void	CMSMZHit_Base::SetCharge (TCharge value)
	Assign a value to Charge data member. More...
TCharge &	CMSMZHit_Base::SetCharge (void)
	Assign a value to Charge data member. More...
bool	CMSMZHit_Base::IsSetNumber (void) const
	the sequential number of the ion Check if a value has been assigned to Number data member. More...
bool	CMSMZHit_Base::CanGetNumber (void) const
	Check if it is safe to call GetNumber method. More...
void	CMSMZHit_Base::ResetNumber (void)
	Reset Number data member. More...
TNumber	CMSMZHit_Base::GetNumber (void) const
	Get the Number member data. More...
void	CMSMZHit_Base::SetNumber (TNumber value)
	Assign a value to Number data member. More...
TNumber &	CMSMZHit_Base::SetNumber (void)
	Assign a value to Number data member. More...
bool	CMSMZHit_Base::IsSetMz (void) const
	scaled m/z value in Da Check if a value has been assigned to Mz data member. More...
bool	CMSMZHit_Base::CanGetMz (void) const
	Check if it is safe to call GetMz method. More...
void	CMSMZHit_Base::ResetMz (void)
	Reset Mz data member. More...
TMz	CMSMZHit_Base::GetMz (void) const
	Get the Mz member data. More...
void	CMSMZHit_Base::SetMz (TMz value)
	Assign a value to Mz data member. More...
TMz &	CMSMZHit_Base::SetMz (void)
	Assign a value to Mz data member. More...
bool	CMSMZHit_Base::IsSetIndex (void) const
	the index of the peak in the original spectrum Check if a value has been assigned to Index data member. More...
bool	CMSMZHit_Base::CanGetIndex (void) const
	Check if it is safe to call GetIndex method. More...
void	CMSMZHit_Base::ResetIndex (void)
	Reset Index data member. More...
TIndex	CMSMZHit_Base::GetIndex (void) const
	Get the Index member data. More...
void	CMSMZHit_Base::SetIndex (TIndex value)
	Assign a value to Index data member. More...
TIndex &	CMSMZHit_Base::SetIndex (void)
	Assign a value to Index data member. More...
bool	CMSMZHit_Base::IsSetMoreion (void) const
	more information about the ion type Check if a value has been assigned to Moreion data member. More...
bool	CMSMZHit_Base::CanGetMoreion (void) const
	Check if it is safe to call GetMoreion method. More...
void	CMSMZHit_Base::ResetMoreion (void)
	Reset Moreion data member. More...
const TMoreion &	CMSMZHit_Base::GetMoreion (void) const
	Get the Moreion member data. More...
void	CMSMZHit_Base::SetMoreion (TMoreion &value)
	Assign a value to Moreion data member. More...
TMoreion &	CMSMZHit_Base::SetMoreion (void)
	Assign a value to Moreion data member. More...
bool	CMSMZHit_Base::IsSetAnnotation (void) const
	annotations on the ion Check if a value has been assigned to Annotation data member. More...
bool	CMSMZHit_Base::CanGetAnnotation (void) const
	Check if it is safe to call GetAnnotation method. More...
void	CMSMZHit_Base::ResetAnnotation (void)
	Reset Annotation data member. More...
const TAnnotation &	CMSMZHit_Base::GetAnnotation (void) const
	Get the Annotation member data. More...
void	CMSMZHit_Base::SetAnnotation (TAnnotation &value)
	Assign a value to Annotation data member. More...
TAnnotation &	CMSMZHit_Base::SetAnnotation (void)
	Assign a value to Annotation data member. More...
virtual void	CMSMZHit_Base::Reset (void)
	Reset the whole object. More...
	CMSMZHit_Base::CMSMZHit_Base (const CMSMZHit_Base &)
CMSMZHit_Base &	CMSMZHit_Base::operator= (const CMSMZHit_Base &)
	CMSOutFile::CMSOutFile (void)
	CMSOutFile::~CMSOutFile (void)
	CMSOutFile::CMSOutFile (const CMSOutFile &value)
CMSOutFile &	CMSOutFile::operator= (const CMSOutFile &value)
	CMSOutFile_Base::CMSOutFile_Base (void)
virtual	CMSOutFile_Base::~CMSOutFile_Base (void)
	CMSOutFile_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSOutFile_Base::IsSetOutfile (void) const
	output file name Check if a value has been assigned to Outfile data member. More...
bool	CMSOutFile_Base::CanGetOutfile (void) const
	Check if it is safe to call GetOutfile method. More...
void	CMSOutFile_Base::ResetOutfile (void)
	Reset Outfile data member. More...
const TOutfile &	CMSOutFile_Base::GetOutfile (void) const
	Get the Outfile member data. More...
void	CMSOutFile_Base::SetOutfile (const TOutfile &value)
	Assign a value to Outfile data member. More...
void	CMSOutFile_Base::SetOutfile (TOutfile &&value)
TOutfile &	CMSOutFile_Base::SetOutfile (void)
	Assign a value to Outfile data member. More...
bool	CMSOutFile_Base::IsSetOutfiletype (void) const
	output file type Check if a value has been assigned to Outfiletype data member. More...
bool	CMSOutFile_Base::CanGetOutfiletype (void) const
	Check if it is safe to call GetOutfiletype method. More...
void	CMSOutFile_Base::ResetOutfiletype (void)
	Reset Outfiletype data member. More...
TOutfiletype	CMSOutFile_Base::GetOutfiletype (void) const
	Get the Outfiletype member data. More...
void	CMSOutFile_Base::SetOutfiletype (TOutfiletype value)
	Assign a value to Outfiletype data member. More...
TOutfiletype &	CMSOutFile_Base::SetOutfiletype (void)
	Assign a value to Outfiletype data member. More...
bool	CMSOutFile_Base::IsSetIncluderequest (void) const
	should the output include the request? Check if a value has been assigned to Includerequest data member. More...
bool	CMSOutFile_Base::CanGetIncluderequest (void) const
	Check if it is safe to call GetIncluderequest method. More...
void	CMSOutFile_Base::ResetIncluderequest (void)
	Reset Includerequest data member. More...
TIncluderequest	CMSOutFile_Base::GetIncluderequest (void) const
	Get the Includerequest member data. More...
void	CMSOutFile_Base::SetIncluderequest (TIncluderequest value)
	Assign a value to Includerequest data member. More...
TIncluderequest &	CMSOutFile_Base::SetIncluderequest (void)
	Assign a value to Includerequest data member. More...
virtual void	CMSOutFile_Base::Reset (void)
	Reset the whole object. More...
	CMSOutFile_Base::CMSOutFile_Base (const CMSOutFile_Base &)
CMSOutFile_Base &	CMSOutFile_Base::operator= (const CMSOutFile_Base &)
	CMSPepHit::CMSPepHit (void)
	CMSPepHit::~CMSPepHit (void)
	CMSPepHit::CMSPepHit (const CMSPepHit &value)
CMSPepHit &	CMSPepHit::operator= (const CMSPepHit &value)
	CMSPepHit_Base::CMSPepHit_Base (void)
virtual	CMSPepHit_Base::~CMSPepHit_Base (void)
	CMSPepHit_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSPepHit_Base::IsSetStart (void) const
	start position (inclusive) in sequence Check if a value has been assigned to Start data member. More...
bool	CMSPepHit_Base::CanGetStart (void) const
	Check if it is safe to call GetStart method. More...
void	CMSPepHit_Base::ResetStart (void)
	Reset Start data member. More...
TStart	CMSPepHit_Base::GetStart (void) const
	Get the Start member data. More...
void	CMSPepHit_Base::SetStart (TStart value)
	Assign a value to Start data member. More...
TStart &	CMSPepHit_Base::SetStart (void)
	Assign a value to Start data member. More...
bool	CMSPepHit_Base::IsSetStop (void) const
	stop position (inclusive) in sequence Check if a value has been assigned to Stop data member. More...
bool	CMSPepHit_Base::CanGetStop (void) const
	Check if it is safe to call GetStop method. More...
void	CMSPepHit_Base::ResetStop (void)
	Reset Stop data member. More...
TStop	CMSPepHit_Base::GetStop (void) const
	Get the Stop member data. More...
void	CMSPepHit_Base::SetStop (TStop value)
	Assign a value to Stop data member. More...
TStop &	CMSPepHit_Base::SetStop (void)
	Assign a value to Stop data member. More...
bool	CMSPepHit_Base::IsSetGi (void) const
	genbank identifier Check if a value has been assigned to Gi data member. More...
bool	CMSPepHit_Base::CanGetGi (void) const
	Check if it is safe to call GetGi method. More...
void	CMSPepHit_Base::ResetGi (void)
	Reset Gi data member. More...
TGi	CMSPepHit_Base::GetGi (void) const
	Get the Gi member data. More...
void	CMSPepHit_Base::SetGi (TGi value)
	Assign a value to Gi data member. More...
TGi &	CMSPepHit_Base::SetGi (void)
	Assign a value to Gi data member. More...
bool	CMSPepHit_Base::IsSetAccession (void) const
	sequence accession Check if a value has been assigned to Accession data member. More...
bool	CMSPepHit_Base::CanGetAccession (void) const
	Check if it is safe to call GetAccession method. More...
void	CMSPepHit_Base::ResetAccession (void)
	Reset Accession data member. More...
const TAccession &	CMSPepHit_Base::GetAccession (void) const
	Get the Accession member data. More...
void	CMSPepHit_Base::SetAccession (const TAccession &value)
	Assign a value to Accession data member. More...
void	CMSPepHit_Base::SetAccession (TAccession &&value)
TAccession &	CMSPepHit_Base::SetAccession (void)
	Assign a value to Accession data member. More...
bool	CMSPepHit_Base::IsSetDefline (void) const
	sequence description Check if a value has been assigned to Defline data member. More...
bool	CMSPepHit_Base::CanGetDefline (void) const
	Check if it is safe to call GetDefline method. More...
void	CMSPepHit_Base::ResetDefline (void)
	Reset Defline data member. More...
const TDefline &	CMSPepHit_Base::GetDefline (void) const
	Get the Defline member data. More...
void	CMSPepHit_Base::SetDefline (const TDefline &value)
	Assign a value to Defline data member. More...
void	CMSPepHit_Base::SetDefline (TDefline &&value)
TDefline &	CMSPepHit_Base::SetDefline (void)
	Assign a value to Defline data member. More...
bool	CMSPepHit_Base::IsSetProtlength (void) const
	length of protein Check if a value has been assigned to Protlength data member. More...
bool	CMSPepHit_Base::CanGetProtlength (void) const
	Check if it is safe to call GetProtlength method. More...
void	CMSPepHit_Base::ResetProtlength (void)
	Reset Protlength data member. More...
TProtlength	CMSPepHit_Base::GetProtlength (void) const
	Get the Protlength member data. More...
void	CMSPepHit_Base::SetProtlength (TProtlength value)
	Assign a value to Protlength data member. More...
TProtlength &	CMSPepHit_Base::SetProtlength (void)
	Assign a value to Protlength data member. More...
bool	CMSPepHit_Base::IsSetOid (void) const
	blast library oid Check if a value has been assigned to Oid data member. More...
bool	CMSPepHit_Base::CanGetOid (void) const
	Check if it is safe to call GetOid method. More...
void	CMSPepHit_Base::ResetOid (void)
	Reset Oid data member. More...
TOid	CMSPepHit_Base::GetOid (void) const
	Get the Oid member data. More...
void	CMSPepHit_Base::SetOid (TOid value)
	Assign a value to Oid data member. More...
TOid &	CMSPepHit_Base::SetOid (void)
	Assign a value to Oid data member. More...
bool	CMSPepHit_Base::IsSetReversed (void) const
	reversed sequence Check if a value has been assigned to Reversed data member. More...
bool	CMSPepHit_Base::CanGetReversed (void) const
	Check if it is safe to call GetReversed method. More...
void	CMSPepHit_Base::ResetReversed (void)
	Reset Reversed data member. More...
TReversed	CMSPepHit_Base::GetReversed (void) const
	Get the Reversed member data. More...
void	CMSPepHit_Base::SetReversed (TReversed value)
	Assign a value to Reversed data member. More...
TReversed &	CMSPepHit_Base::SetReversed (void)
	Assign a value to Reversed data member. More...
bool	CMSPepHit_Base::IsSetPepstart (void) const
	AA before the peptide Check if a value has been assigned to Pepstart data member. More...
bool	CMSPepHit_Base::CanGetPepstart (void) const
	Check if it is safe to call GetPepstart method. More...
void	CMSPepHit_Base::ResetPepstart (void)
	Reset Pepstart data member. More...
const TPepstart &	CMSPepHit_Base::GetPepstart (void) const
	Get the Pepstart member data. More...
void	CMSPepHit_Base::SetPepstart (const TPepstart &value)
	Assign a value to Pepstart data member. More...
void	CMSPepHit_Base::SetPepstart (TPepstart &&value)
TPepstart &	CMSPepHit_Base::SetPepstart (void)
	Assign a value to Pepstart data member. More...
bool	CMSPepHit_Base::IsSetPepstop (void) const
	AA after the peptide Check if a value has been assigned to Pepstop data member. More...
bool	CMSPepHit_Base::CanGetPepstop (void) const
	Check if it is safe to call GetPepstop method. More...
void	CMSPepHit_Base::ResetPepstop (void)
	Reset Pepstop data member. More...
const TPepstop &	CMSPepHit_Base::GetPepstop (void) const
	Get the Pepstop member data. More...
void	CMSPepHit_Base::SetPepstop (const TPepstop &value)
	Assign a value to Pepstop data member. More...
void	CMSPepHit_Base::SetPepstop (TPepstop &&value)
TPepstop &	CMSPepHit_Base::SetPepstop (void)
	Assign a value to Pepstop data member. More...
virtual void	CMSPepHit_Base::Reset (void)
	Reset the whole object. More...
	CMSPepHit_Base::CMSPepHit_Base (const CMSPepHit_Base &)
CMSPepHit_Base &	CMSPepHit_Base::operator= (const CMSPepHit_Base &)
	CMSRequest_Base::CMSRequest_Base (void)
virtual	CMSRequest_Base::~CMSRequest_Base (void)
	CMSRequest_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSRequest_Base::IsSetSpectra (void) const
	the set of spectra Check if a value has been assigned to Spectra data member. More...
bool	CMSRequest_Base::CanGetSpectra (void) const
	Check if it is safe to call GetSpectra method. More...
void	CMSRequest_Base::ResetSpectra (void)
	Reset Spectra data member. More...
const TSpectra &	CMSRequest_Base::GetSpectra (void) const
	Get the Spectra member data. More...
void	CMSRequest_Base::SetSpectra (TSpectra &value)
	Assign a value to Spectra data member. More...
TSpectra &	CMSRequest_Base::SetSpectra (void)
	Assign a value to Spectra data member. More...
bool	CMSRequest_Base::IsSetSettings (void) const
	the search settings Check if a value has been assigned to Settings data member. More...
bool	CMSRequest_Base::CanGetSettings (void) const
	Check if it is safe to call GetSettings method. More...
void	CMSRequest_Base::ResetSettings (void)
	Reset Settings data member. More...
const TSettings &	CMSRequest_Base::GetSettings (void) const
	Get the Settings member data. More...
void	CMSRequest_Base::SetSettings (TSettings &value)
	Assign a value to Settings data member. More...
TSettings &	CMSRequest_Base::SetSettings (void)
	Assign a value to Settings data member. More...
bool	CMSRequest_Base::IsSetRid (void) const
	request id Check if a value has been assigned to Rid data member. More...
bool	CMSRequest_Base::CanGetRid (void) const
	Check if it is safe to call GetRid method. More...
void	CMSRequest_Base::ResetRid (void)
	Reset Rid data member. More...
const TRid &	CMSRequest_Base::GetRid (void) const
	Get the Rid member data. More...
void	CMSRequest_Base::SetRid (const TRid &value)
	Assign a value to Rid data member. More...
void	CMSRequest_Base::SetRid (TRid &&value)
TRid &	CMSRequest_Base::SetRid (void)
	Assign a value to Rid data member. More...
bool	CMSRequest_Base::IsSetMoresettings (void) const
	additional search runs Check if a value has been assigned to Moresettings data member. More...
bool	CMSRequest_Base::CanGetMoresettings (void) const
	Check if it is safe to call GetMoresettings method. More...
void	CMSRequest_Base::ResetMoresettings (void)
	Reset Moresettings data member. More...
const TMoresettings &	CMSRequest_Base::GetMoresettings (void) const
	Get the Moresettings member data. More...
void	CMSRequest_Base::SetMoresettings (TMoresettings &value)
	Assign a value to Moresettings data member. More...
TMoresettings &	CMSRequest_Base::SetMoresettings (void)
	Assign a value to Moresettings data member. More...
bool	CMSRequest_Base::IsSetModset (void) const
	list of mods that can be used in search Check if a value has been assigned to Modset data member. More...
bool	CMSRequest_Base::CanGetModset (void) const
	Check if it is safe to call GetModset method. More...
void	CMSRequest_Base::ResetModset (void)
	Reset Modset data member. More...
const TModset &	CMSRequest_Base::GetModset (void) const
	Get the Modset member data. More...
void	CMSRequest_Base::SetModset (TModset &value)
	Assign a value to Modset data member. More...
TModset &	CMSRequest_Base::SetModset (void)
	Assign a value to Modset data member. More...
virtual void	CMSRequest_Base::Reset (void)
	Reset the whole object. More...
	CMSRequest_Base::CMSRequest_Base (const CMSRequest_Base &)
CMSRequest_Base &	CMSRequest_Base::operator= (const CMSRequest_Base &)
	CMSResponse_Base::CMSResponse_Base (void)
virtual	CMSResponse_Base::~CMSResponse_Base (void)
	CMSResponse_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSResponse_Base::IsSetHitsets (void) const
	hits grouped by spectrum Check if a value has been assigned to Hitsets data member. More...
bool	CMSResponse_Base::CanGetHitsets (void) const
	Check if it is safe to call GetHitsets method. More...
void	CMSResponse_Base::ResetHitsets (void)
	Reset Hitsets data member. More...
const THitsets &	CMSResponse_Base::GetHitsets (void) const
	Get the Hitsets member data. More...
THitsets &	CMSResponse_Base::SetHitsets (void)
	Assign a value to Hitsets data member. More...
bool	CMSResponse_Base::IsSetScale (void) const
	scale to change m/z float to integer Check if a value has been assigned to Scale data member. More...
bool	CMSResponse_Base::CanGetScale (void) const
	Check if it is safe to call GetScale method. More...
void	CMSResponse_Base::ResetScale (void)
	Reset Scale data member. More...
void	CMSResponse_Base::SetDefaultScale (void)
	Assign default value to Scale data member. More...
TScale	CMSResponse_Base::GetScale (void) const
	Get the Scale member data. More...
void	CMSResponse_Base::SetScale (TScale value)
	Assign a value to Scale data member. More...
TScale &	CMSResponse_Base::SetScale (void)
	Assign a value to Scale data member. More...
bool	CMSResponse_Base::IsSetRid (void) const
	request id Check if a value has been assigned to Rid data member. More...
bool	CMSResponse_Base::CanGetRid (void) const
	Check if it is safe to call GetRid method. More...
void	CMSResponse_Base::ResetRid (void)
	Reset Rid data member. More...
const TRid &	CMSResponse_Base::GetRid (void) const
	Get the Rid member data. More...
void	CMSResponse_Base::SetRid (const TRid &value)
	Assign a value to Rid data member. More...
void	CMSResponse_Base::SetRid (TRid &&value)
TRid &	CMSResponse_Base::SetRid (void)
	Assign a value to Rid data member. More...
bool	CMSResponse_Base::IsSetError (void) const
	error response Check if a value has been assigned to Error data member. More...
bool	CMSResponse_Base::CanGetError (void) const
	Check if it is safe to call GetError method. More...
void	CMSResponse_Base::ResetError (void)
	Reset Error data member. More...
TError	CMSResponse_Base::GetError (void) const
	Get the Error member data. More...
void	CMSResponse_Base::SetError (TError value)
	Assign a value to Error data member. More...
TError &	CMSResponse_Base::SetError (void)
	Assign a value to Error data member. More...
bool	CMSResponse_Base::IsSetVersion (void) const
	version of OMSSA Check if a value has been assigned to Version data member. More...
bool	CMSResponse_Base::CanGetVersion (void) const
	Check if it is safe to call GetVersion method. More...
void	CMSResponse_Base::ResetVersion (void)
	Reset Version data member. More...
const TVersion &	CMSResponse_Base::GetVersion (void) const
	Get the Version member data. More...
void	CMSResponse_Base::SetVersion (const TVersion &value)
	Assign a value to Version data member. More...
void	CMSResponse_Base::SetVersion (TVersion &&value)
TVersion &	CMSResponse_Base::SetVersion (void)
	Assign a value to Version data member. More...
bool	CMSResponse_Base::IsSetEmail (void) const
	email address for notification Check if a value has been assigned to Email data member. More...
bool	CMSResponse_Base::CanGetEmail (void) const
	Check if it is safe to call GetEmail method. More...
void	CMSResponse_Base::ResetEmail (void)
	Reset Email data member. More...
const TEmail &	CMSResponse_Base::GetEmail (void) const
	Get the Email member data. More...
void	CMSResponse_Base::SetEmail (const TEmail &value)
	Assign a value to Email data member. More...
void	CMSResponse_Base::SetEmail (TEmail &&value)
TEmail &	CMSResponse_Base::SetEmail (void)
	Assign a value to Email data member. More...
bool	CMSResponse_Base::IsSetDbversion (void) const
	version of db searched (usually size) Check if a value has been assigned to Dbversion data member. More...
bool	CMSResponse_Base::CanGetDbversion (void) const
	Check if it is safe to call GetDbversion method. More...
void	CMSResponse_Base::ResetDbversion (void)
	Reset Dbversion data member. More...
TDbversion	CMSResponse_Base::GetDbversion (void) const
	Get the Dbversion member data. More...
void	CMSResponse_Base::SetDbversion (TDbversion value)
	Assign a value to Dbversion data member. More...
TDbversion &	CMSResponse_Base::SetDbversion (void)
	Assign a value to Dbversion data member. More...
bool	CMSResponse_Base::IsSetBioseqs (void) const
	sequences found in search Check if a value has been assigned to Bioseqs data member. More...
bool	CMSResponse_Base::CanGetBioseqs (void) const
	Check if it is safe to call GetBioseqs method. More...
void	CMSResponse_Base::ResetBioseqs (void)
	Reset Bioseqs data member. More...
const TBioseqs &	CMSResponse_Base::GetBioseqs (void) const
	Get the Bioseqs member data. More...
void	CMSResponse_Base::SetBioseqs (TBioseqs &value)
	Assign a value to Bioseqs data member. More...
TBioseqs &	CMSResponse_Base::SetBioseqs (void)
	Assign a value to Bioseqs data member. More...
virtual void	CMSResponse_Base::Reset (void)
	Reset the whole object. More...
	CMSResponse_Base::CMSResponse_Base (const CMSResponse_Base &)
CMSResponse_Base &	CMSResponse_Base::operator= (const CMSResponse_Base &)
	CMSScoreSet::CMSScoreSet (void)
	CMSScoreSet::~CMSScoreSet (void)
	CMSScoreSet::CMSScoreSet (const CMSScoreSet &value)
CMSScoreSet &	CMSScoreSet::operator= (const CMSScoreSet &value)
	CMSScoreSet_Base::CMSScoreSet_Base (void)
virtual	CMSScoreSet_Base::~CMSScoreSet_Base (void)
	CMSScoreSet_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSScoreSet_Base::IsSetName (void) const
	Check if a value has been assigned to Name data member. More...
bool	CMSScoreSet_Base::CanGetName (void) const
	Check if it is safe to call GetName method. More...
void	CMSScoreSet_Base::ResetName (void)
	Reset Name data member. More...
const TName &	CMSScoreSet_Base::GetName (void) const
	Get the Name member data. More...
void	CMSScoreSet_Base::SetName (const TName &value)
	Assign a value to Name data member. More...
void	CMSScoreSet_Base::SetName (TName &&value)
TName &	CMSScoreSet_Base::SetName (void)
	Assign a value to Name data member. More...
bool	CMSScoreSet_Base::IsSetValue (void) const
	Check if a value has been assigned to Value data member. More...
bool	CMSScoreSet_Base::CanGetValue (void) const
	Check if it is safe to call GetValue method. More...
void	CMSScoreSet_Base::ResetValue (void)
	Reset Value data member. More...
TValue	CMSScoreSet_Base::GetValue (void) const
	Get the Value member data. More...
void	CMSScoreSet_Base::SetValue (TValue value)
	Assign a value to Value data member. More...
TValue &	CMSScoreSet_Base::SetValue (void)
	Assign a value to Value data member. More...
virtual void	CMSScoreSet_Base::Reset (void)
	Reset the whole object. More...
	CMSScoreSet_Base::CMSScoreSet_Base (const CMSScoreSet_Base &)
CMSScoreSet_Base &	CMSScoreSet_Base::operator= (const CMSScoreSet_Base &)
	CMSSearch_Base::CMSSearch_Base (void)
virtual	CMSSearch_Base::~CMSSearch_Base (void)
	CMSSearch_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSSearch_Base::IsSetRequest (void) const
	Check if a value has been assigned to Request data member. More...
bool	CMSSearch_Base::CanGetRequest (void) const
	Check if it is safe to call GetRequest method. More...
void	CMSSearch_Base::ResetRequest (void)
	Reset Request data member. More...
const TRequest &	CMSSearch_Base::GetRequest (void) const
	Get the Request member data. More...
TRequest &	CMSSearch_Base::SetRequest (void)
	Assign a value to Request data member. More...
bool	CMSSearch_Base::IsSetResponse (void) const
	Check if a value has been assigned to Response data member. More...
bool	CMSSearch_Base::CanGetResponse (void) const
	Check if it is safe to call GetResponse method. More...
void	CMSSearch_Base::ResetResponse (void)
	Reset Response data member. More...
const TResponse &	CMSSearch_Base::GetResponse (void) const
	Get the Response member data. More...
TResponse &	CMSSearch_Base::SetResponse (void)
	Assign a value to Response data member. More...
virtual void	CMSSearch_Base::Reset (void)
	Reset the whole object. More...
	CMSSearch_Base::CMSSearch_Base (const CMSSearch_Base &)
CMSSearch_Base &	CMSSearch_Base::operator= (const CMSSearch_Base &)
	CMSSearchSettings_Base::CMSSearchSettings_Base (void)
virtual	CMSSearchSettings_Base::~CMSSearchSettings_Base (void)
	CMSSearchSettings_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSSearchSettings_Base::IsSetPrecursorsearchtype (void) const
	average or monoisotopic? Check if a value has been assigned to Precursorsearchtype data member. More...
bool	CMSSearchSettings_Base::CanGetPrecursorsearchtype (void) const
	Check if it is safe to call GetPrecursorsearchtype method. More...
void	CMSSearchSettings_Base::ResetPrecursorsearchtype (void)
	Reset Precursorsearchtype data member. More...
TPrecursorsearchtype	CMSSearchSettings_Base::GetPrecursorsearchtype (void) const
	Get the Precursorsearchtype member data. More...
void	CMSSearchSettings_Base::SetPrecursorsearchtype (TPrecursorsearchtype value)
	Assign a value to Precursorsearchtype data member. More...
TPrecursorsearchtype &	CMSSearchSettings_Base::SetPrecursorsearchtype (void)
	Assign a value to Precursorsearchtype data member. More...
bool	CMSSearchSettings_Base::IsSetProductsearchtype (void) const
	average or monoisotopic? Check if a value has been assigned to Productsearchtype data member. More...
bool	CMSSearchSettings_Base::CanGetProductsearchtype (void) const
	Check if it is safe to call GetProductsearchtype method. More...
void	CMSSearchSettings_Base::ResetProductsearchtype (void)
	Reset Productsearchtype data member. More...
TProductsearchtype	CMSSearchSettings_Base::GetProductsearchtype (void) const
	Get the Productsearchtype member data. More...
void	CMSSearchSettings_Base::SetProductsearchtype (TProductsearchtype value)
	Assign a value to Productsearchtype data member. More...
TProductsearchtype &	CMSSearchSettings_Base::SetProductsearchtype (void)
	Assign a value to Productsearchtype data member. More...
bool	CMSSearchSettings_Base::IsSetIonstosearch (void) const
	which ions to search? Check if a value has been assigned to Ionstosearch data member. More...
bool	CMSSearchSettings_Base::CanGetIonstosearch (void) const
	Check if it is safe to call GetIonstosearch method. More...
void	CMSSearchSettings_Base::ResetIonstosearch (void)
	Reset Ionstosearch data member. More...
const TIonstosearch &	CMSSearchSettings_Base::GetIonstosearch (void) const
	Get the Ionstosearch member data. More...
TIonstosearch &	CMSSearchSettings_Base::SetIonstosearch (void)
	Assign a value to Ionstosearch data member. More...
bool	CMSSearchSettings_Base::IsSetPeptol (void) const
	peptide mass tolerance Check if a value has been assigned to Peptol data member. More...
bool	CMSSearchSettings_Base::CanGetPeptol (void) const
	Check if it is safe to call GetPeptol method. More...
void	CMSSearchSettings_Base::ResetPeptol (void)
	Reset Peptol data member. More...
TPeptol	CMSSearchSettings_Base::GetPeptol (void) const
	Get the Peptol member data. More...
void	CMSSearchSettings_Base::SetPeptol (TPeptol value)
	Assign a value to Peptol data member. More...
TPeptol &	CMSSearchSettings_Base::SetPeptol (void)
	Assign a value to Peptol data member. More...
bool	CMSSearchSettings_Base::IsSetMsmstol (void) const
	msms mass tolerance Check if a value has been assigned to Msmstol data member. More...
bool	CMSSearchSettings_Base::CanGetMsmstol (void) const
	Check if it is safe to call GetMsmstol method. More...
void	CMSSearchSettings_Base::ResetMsmstol (void)
	Reset Msmstol data member. More...
TMsmstol	CMSSearchSettings_Base::GetMsmstol (void) const
	Get the Msmstol member data. More...
void	CMSSearchSettings_Base::SetMsmstol (TMsmstol value)
	Assign a value to Msmstol data member. More...
TMsmstol &	CMSSearchSettings_Base::SetMsmstol (void)
	Assign a value to Msmstol data member. More...
bool	CMSSearchSettings_Base::IsSetZdep (void) const
	what is the charge dependence of the mass tolerance? Check if a value has been assigned to Zdep data member. More...
bool	CMSSearchSettings_Base::CanGetZdep (void) const
	Check if it is safe to call GetZdep method. More...
void	CMSSearchSettings_Base::ResetZdep (void)
	Reset Zdep data member. More...
TZdep	CMSSearchSettings_Base::GetZdep (void) const
	Get the Zdep member data. More...
void	CMSSearchSettings_Base::SetZdep (TZdep value)
	Assign a value to Zdep data member. More...
TZdep &	CMSSearchSettings_Base::SetZdep (void)
	Assign a value to Zdep data member. More...
bool	CMSSearchSettings_Base::IsSetCutoff (void) const
	evalue cutoff next 3 fields define intensity fraction below which peaks will be discard Check if a value has been assigned to Cutoff data member. More...
bool	CMSSearchSettings_Base::CanGetCutoff (void) const
	Check if it is safe to call GetCutoff method. More...
void	CMSSearchSettings_Base::ResetCutoff (void)
	Reset Cutoff data member. More...
TCutoff	CMSSearchSettings_Base::GetCutoff (void) const
	Get the Cutoff member data. More...
void	CMSSearchSettings_Base::SetCutoff (TCutoff value)
	Assign a value to Cutoff data member. More...
TCutoff &	CMSSearchSettings_Base::SetCutoff (void)
	Assign a value to Cutoff data member. More...
bool	CMSSearchSettings_Base::IsSetCutlo (void) const
	the start of the cutoff, fraction of most intense peak Check if a value has been assigned to Cutlo data member. More...
bool	CMSSearchSettings_Base::CanGetCutlo (void) const
	Check if it is safe to call GetCutlo method. More...
void	CMSSearchSettings_Base::ResetCutlo (void)
	Reset Cutlo data member. More...
TCutlo	CMSSearchSettings_Base::GetCutlo (void) const
	Get the Cutlo member data. More...
void	CMSSearchSettings_Base::SetCutlo (TCutlo value)
	Assign a value to Cutlo data member. More...
TCutlo &	CMSSearchSettings_Base::SetCutlo (void)
	Assign a value to Cutlo data member. More...
bool	CMSSearchSettings_Base::IsSetCuthi (void) const
	the end of the cutoff Check if a value has been assigned to Cuthi data member. More...
bool	CMSSearchSettings_Base::CanGetCuthi (void) const
	Check if it is safe to call GetCuthi method. More...
void	CMSSearchSettings_Base::ResetCuthi (void)
	Reset Cuthi data member. More...
TCuthi	CMSSearchSettings_Base::GetCuthi (void) const
	Get the Cuthi member data. More...
void	CMSSearchSettings_Base::SetCuthi (TCuthi value)
	Assign a value to Cuthi data member. More...
TCuthi &	CMSSearchSettings_Base::SetCuthi (void)
	Assign a value to Cuthi data member. More...
bool	CMSSearchSettings_Base::IsSetCutinc (void) const
	the increment of the cutoff Check if a value has been assigned to Cutinc data member. More...
bool	CMSSearchSettings_Base::CanGetCutinc (void) const
	Check if it is safe to call GetCutinc method. More...
void	CMSSearchSettings_Base::ResetCutinc (void)
	Reset Cutinc data member. More...
TCutinc	CMSSearchSettings_Base::GetCutinc (void) const
	Get the Cutinc member data. More...
void	CMSSearchSettings_Base::SetCutinc (TCutinc value)
	Assign a value to Cutinc data member. More...
TCutinc &	CMSSearchSettings_Base::SetCutinc (void)
	Assign a value to Cutinc data member. More...
bool	CMSSearchSettings_Base::IsSetSinglewin (void) const
	the size of the single charge filtering window Check if a value has been assigned to Singlewin data member. More...
bool	CMSSearchSettings_Base::CanGetSinglewin (void) const
	Check if it is safe to call GetSinglewin method. More...
void	CMSSearchSettings_Base::ResetSinglewin (void)
	Reset Singlewin data member. More...
TSinglewin	CMSSearchSettings_Base::GetSinglewin (void) const
	Get the Singlewin member data. More...
void	CMSSearchSettings_Base::SetSinglewin (TSinglewin value)
	Assign a value to Singlewin data member. More...
TSinglewin &	CMSSearchSettings_Base::SetSinglewin (void)
	Assign a value to Singlewin data member. More...
bool	CMSSearchSettings_Base::IsSetDoublewin (void) const
	the size of the double charge filtering window Check if a value has been assigned to Doublewin data member. More...
bool	CMSSearchSettings_Base::CanGetDoublewin (void) const
	Check if it is safe to call GetDoublewin method. More...
void	CMSSearchSettings_Base::ResetDoublewin (void)
	Reset Doublewin data member. More...
TDoublewin	CMSSearchSettings_Base::GetDoublewin (void) const
	Get the Doublewin member data. More...
void	CMSSearchSettings_Base::SetDoublewin (TDoublewin value)
	Assign a value to Doublewin data member. More...
TDoublewin &	CMSSearchSettings_Base::SetDoublewin (void)
	Assign a value to Doublewin data member. More...
bool	CMSSearchSettings_Base::IsSetSinglenum (void) const
	the number of peaks allowed in the single window Check if a value has been assigned to Singlenum data member. More...
bool	CMSSearchSettings_Base::CanGetSinglenum (void) const
	Check if it is safe to call GetSinglenum method. More...
void	CMSSearchSettings_Base::ResetSinglenum (void)
	Reset Singlenum data member. More...
TSinglenum	CMSSearchSettings_Base::GetSinglenum (void) const
	Get the Singlenum member data. More...
void	CMSSearchSettings_Base::SetSinglenum (TSinglenum value)
	Assign a value to Singlenum data member. More...
TSinglenum &	CMSSearchSettings_Base::SetSinglenum (void)
	Assign a value to Singlenum data member. More...
bool	CMSSearchSettings_Base::IsSetDoublenum (void) const
	the number of peaks allowed in the double window Check if a value has been assigned to Doublenum data member. More...
bool	CMSSearchSettings_Base::CanGetDoublenum (void) const
	Check if it is safe to call GetDoublenum method. More...
void	CMSSearchSettings_Base::ResetDoublenum (void)
	Reset Doublenum data member. More...
TDoublenum	CMSSearchSettings_Base::GetDoublenum (void) const
	Get the Doublenum member data. More...
void	CMSSearchSettings_Base::SetDoublenum (TDoublenum value)
	Assign a value to Doublenum data member. More...
TDoublenum &	CMSSearchSettings_Base::SetDoublenum (void)
	Assign a value to Doublenum data member. More...
bool	CMSSearchSettings_Base::IsSetFixed (void) const
	fixed PTM's Check if a value has been assigned to Fixed data member. More...
bool	CMSSearchSettings_Base::CanGetFixed (void) const
	Check if it is safe to call GetFixed method. More...
void	CMSSearchSettings_Base::ResetFixed (void)
	Reset Fixed data member. More...
const TFixed &	CMSSearchSettings_Base::GetFixed (void) const
	Get the Fixed member data. More...
TFixed &	CMSSearchSettings_Base::SetFixed (void)
	Assign a value to Fixed data member. More...
bool	CMSSearchSettings_Base::IsSetVariable (void) const
	variable PTM's Check if a value has been assigned to Variable data member. More...
bool	CMSSearchSettings_Base::CanGetVariable (void) const
	Check if it is safe to call GetVariable method. More...
void	CMSSearchSettings_Base::ResetVariable (void)
	Reset Variable data member. More...
const TVariable &	CMSSearchSettings_Base::GetVariable (void) const
	Get the Variable member data. More...
TVariable &	CMSSearchSettings_Base::SetVariable (void)
	Assign a value to Variable data member. More...
bool	CMSSearchSettings_Base::IsSetEnzyme (void) const
	digestion enzyme Check if a value has been assigned to Enzyme data member. More...
bool	CMSSearchSettings_Base::CanGetEnzyme (void) const
	Check if it is safe to call GetEnzyme method. More...
void	CMSSearchSettings_Base::ResetEnzyme (void)
	Reset Enzyme data member. More...
TEnzyme	CMSSearchSettings_Base::GetEnzyme (void) const
	Get the Enzyme member data. More...
void	CMSSearchSettings_Base::SetEnzyme (TEnzyme value)
	Assign a value to Enzyme data member. More...
TEnzyme &	CMSSearchSettings_Base::SetEnzyme (void)
	Assign a value to Enzyme data member. More...
bool	CMSSearchSettings_Base::IsSetMissedcleave (void) const
	number of missed cleaves allowed Check if a value has been assigned to Missedcleave data member. More...
bool	CMSSearchSettings_Base::CanGetMissedcleave (void) const
	Check if it is safe to call GetMissedcleave method. More...
void	CMSSearchSettings_Base::ResetMissedcleave (void)
	Reset Missedcleave data member. More...
TMissedcleave	CMSSearchSettings_Base::GetMissedcleave (void) const
	Get the Missedcleave member data. More...
void	CMSSearchSettings_Base::SetMissedcleave (TMissedcleave value)
	Assign a value to Missedcleave data member. More...
TMissedcleave &	CMSSearchSettings_Base::SetMissedcleave (void)
	Assign a value to Missedcleave data member. More...
bool	CMSSearchSettings_Base::IsSetHitlistlen (void) const
	the number of hits kept in memory for a spectrum Check if a value has been assigned to Hitlistlen data member. More...
bool	CMSSearchSettings_Base::CanGetHitlistlen (void) const
	Check if it is safe to call GetHitlistlen method. More...
void	CMSSearchSettings_Base::ResetHitlistlen (void)
	Reset Hitlistlen data member. More...
void	CMSSearchSettings_Base::SetDefaultHitlistlen (void)
	Assign default value to Hitlistlen data member. More...
THitlistlen	CMSSearchSettings_Base::GetHitlistlen (void) const
	Get the Hitlistlen member data. More...
void	CMSSearchSettings_Base::SetHitlistlen (THitlistlen value)
	Assign a value to Hitlistlen data member. More...
THitlistlen &	CMSSearchSettings_Base::SetHitlistlen (void)
	Assign a value to Hitlistlen data member. More...
bool	CMSSearchSettings_Base::IsSetDb (void) const
	sequence set to search, e.g. More...
bool	CMSSearchSettings_Base::CanGetDb (void) const
	Check if it is safe to call GetDb method. More...
void	CMSSearchSettings_Base::ResetDb (void)
	Reset Db data member. More...
const TDb &	CMSSearchSettings_Base::GetDb (void) const
	Get the Db member data. More...
void	CMSSearchSettings_Base::SetDb (const TDb &value)
	Assign a value to Db data member. More...
void	CMSSearchSettings_Base::SetDb (TDb &&value)
TDb &	CMSSearchSettings_Base::SetDb (void)
	Assign a value to Db data member. More...
bool	CMSSearchSettings_Base::IsSetTophitnum (void) const
	number of m/z to consider in first pass Check if a value has been assigned to Tophitnum data member. More...
bool	CMSSearchSettings_Base::CanGetTophitnum (void) const
	Check if it is safe to call GetTophitnum method. More...
void	CMSSearchSettings_Base::ResetTophitnum (void)
	Reset Tophitnum data member. More...
TTophitnum	CMSSearchSettings_Base::GetTophitnum (void) const
	Get the Tophitnum member data. More...
void	CMSSearchSettings_Base::SetTophitnum (TTophitnum value)
	Assign a value to Tophitnum data member. More...
TTophitnum &	CMSSearchSettings_Base::SetTophitnum (void)
	Assign a value to Tophitnum data member. More...
bool	CMSSearchSettings_Base::IsSetMinhit (void) const
	minimum number of m/z values for a valid hit Check if a value has been assigned to Minhit data member. More...
bool	CMSSearchSettings_Base::CanGetMinhit (void) const
	Check if it is safe to call GetMinhit method. More...
void	CMSSearchSettings_Base::ResetMinhit (void)
	Reset Minhit data member. More...
void	CMSSearchSettings_Base::SetDefaultMinhit (void)
	Assign default value to Minhit data member. More...
TMinhit	CMSSearchSettings_Base::GetMinhit (void) const
	Get the Minhit member data. More...
void	CMSSearchSettings_Base::SetMinhit (TMinhit value)
	Assign a value to Minhit data member. More...
TMinhit &	CMSSearchSettings_Base::SetMinhit (void)
	Assign a value to Minhit data member. More...
bool	CMSSearchSettings_Base::IsSetMinspectra (void) const
	minimum number of m/z for a valid spectra Check if a value has been assigned to Minspectra data member. More...
bool	CMSSearchSettings_Base::CanGetMinspectra (void) const
	Check if it is safe to call GetMinspectra method. More...
void	CMSSearchSettings_Base::ResetMinspectra (void)
	Reset Minspectra data member. More...
void	CMSSearchSettings_Base::SetDefaultMinspectra (void)
	Assign default value to Minspectra data member. More...
TMinspectra	CMSSearchSettings_Base::GetMinspectra (void) const
	Get the Minspectra member data. More...
void	CMSSearchSettings_Base::SetMinspectra (TMinspectra value)
	Assign a value to Minspectra data member. More...
TMinspectra &	CMSSearchSettings_Base::SetMinspectra (void)
	Assign a value to Minspectra data member. More...
bool	CMSSearchSettings_Base::IsSetScale (void) const
	scale for m/z float to integer Check if a value has been assigned to Scale data member. More...
bool	CMSSearchSettings_Base::CanGetScale (void) const
	Check if it is safe to call GetScale method. More...
void	CMSSearchSettings_Base::ResetScale (void)
	Reset Scale data member. More...
void	CMSSearchSettings_Base::SetDefaultScale (void)
	Assign default value to Scale data member. More...
TScale	CMSSearchSettings_Base::GetScale (void) const
	Get the Scale member data. More...
void	CMSSearchSettings_Base::SetScale (TScale value)
	Assign a value to Scale data member. More...
TScale &	CMSSearchSettings_Base::SetScale (void)
	Assign a value to Scale data member. More...
bool	CMSSearchSettings_Base::IsSetMaxmods (void) const
	maximum number of mass ladders per database peptide Check if a value has been assigned to Maxmods data member. More...
bool	CMSSearchSettings_Base::CanGetMaxmods (void) const
	Check if it is safe to call GetMaxmods method. More...
void	CMSSearchSettings_Base::ResetMaxmods (void)
	Reset Maxmods data member. More...
void	CMSSearchSettings_Base::SetDefaultMaxmods (void)
	Assign default value to Maxmods data member. More...
TMaxmods	CMSSearchSettings_Base::GetMaxmods (void) const
	Get the Maxmods member data. More...
void	CMSSearchSettings_Base::SetMaxmods (TMaxmods value)
	Assign a value to Maxmods data member. More...
TMaxmods &	CMSSearchSettings_Base::SetMaxmods (void)
	Assign a value to Maxmods data member. More...
bool	CMSSearchSettings_Base::IsSetTaxids (void) const
	taxa to limit search Check if a value has been assigned to Taxids data member. More...
bool	CMSSearchSettings_Base::CanGetTaxids (void) const
	Check if it is safe to call GetTaxids method. More...
void	CMSSearchSettings_Base::ResetTaxids (void)
	Reset Taxids data member. More...
const TTaxids &	CMSSearchSettings_Base::GetTaxids (void) const
	Get the Taxids member data. More...
TTaxids &	CMSSearchSettings_Base::SetTaxids (void)
	Assign a value to Taxids data member. More...
bool	CMSSearchSettings_Base::IsSetChargehandling (void) const
	how to deal with charges Check if a value has been assigned to Chargehandling data member. More...
bool	CMSSearchSettings_Base::CanGetChargehandling (void) const
	Check if it is safe to call GetChargehandling method. More...
void	CMSSearchSettings_Base::ResetChargehandling (void)
	Reset Chargehandling data member. More...
const TChargehandling &	CMSSearchSettings_Base::GetChargehandling (void) const
	Get the Chargehandling member data. More...
void	CMSSearchSettings_Base::SetChargehandling (TChargehandling &value)
	Assign a value to Chargehandling data member. More...
TChargehandling &	CMSSearchSettings_Base::SetChargehandling (void)
	Assign a value to Chargehandling data member. More...
bool	CMSSearchSettings_Base::IsSetUsermods (void) const
	user defined modifications Check if a value has been assigned to Usermods data member. More...
bool	CMSSearchSettings_Base::CanGetUsermods (void) const
	Check if it is safe to call GetUsermods method. More...
void	CMSSearchSettings_Base::ResetUsermods (void)
	Reset Usermods data member. More...
const TUsermods &	CMSSearchSettings_Base::GetUsermods (void) const
	Get the Usermods member data. More...
void	CMSSearchSettings_Base::SetUsermods (TUsermods &value)
	Assign a value to Usermods data member. More...
TUsermods &	CMSSearchSettings_Base::SetUsermods (void)
	Assign a value to Usermods data member. More...
bool	CMSSearchSettings_Base::IsSetPseudocount (void) const
	min number of counts per precursor bin Check if a value has been assigned to Pseudocount data member. More...
bool	CMSSearchSettings_Base::CanGetPseudocount (void) const
	Check if it is safe to call GetPseudocount method. More...
void	CMSSearchSettings_Base::ResetPseudocount (void)
	Reset Pseudocount data member. More...
void	CMSSearchSettings_Base::SetDefaultPseudocount (void)
	Assign default value to Pseudocount data member. More...
TPseudocount	CMSSearchSettings_Base::GetPseudocount (void) const
	Get the Pseudocount member data. More...
void	CMSSearchSettings_Base::SetPseudocount (TPseudocount value)
	Assign a value to Pseudocount data member. More...
TPseudocount &	CMSSearchSettings_Base::SetPseudocount (void)
	Assign a value to Pseudocount data member. More...
bool	CMSSearchSettings_Base::IsSetSearchb1 (void) const
	should b1 product be in search (1=no, 0=yes) Check if a value has been assigned to Searchb1 data member. More...
bool	CMSSearchSettings_Base::CanGetSearchb1 (void) const
	Check if it is safe to call GetSearchb1 method. More...
void	CMSSearchSettings_Base::ResetSearchb1 (void)
	Reset Searchb1 data member. More...
void	CMSSearchSettings_Base::SetDefaultSearchb1 (void)
	Assign default value to Searchb1 data member. More...
TSearchb1	CMSSearchSettings_Base::GetSearchb1 (void) const
	Get the Searchb1 member data. More...
void	CMSSearchSettings_Base::SetSearchb1 (TSearchb1 value)
	Assign a value to Searchb1 data member. More...
TSearchb1 &	CMSSearchSettings_Base::SetSearchb1 (void)
	Assign a value to Searchb1 data member. More...
bool	CMSSearchSettings_Base::IsSetSearchctermproduct (void) const
	should c terminus ion be searched (1=no, 0=yes) Check if a value has been assigned to Searchctermproduct data member. More...
bool	CMSSearchSettings_Base::CanGetSearchctermproduct (void) const
	Check if it is safe to call GetSearchctermproduct method. More...
void	CMSSearchSettings_Base::ResetSearchctermproduct (void)
	Reset Searchctermproduct data member. More...
void	CMSSearchSettings_Base::SetDefaultSearchctermproduct (void)
	Assign default value to Searchctermproduct data member. More...
TSearchctermproduct	CMSSearchSettings_Base::GetSearchctermproduct (void) const
	Get the Searchctermproduct member data. More...
void	CMSSearchSettings_Base::SetSearchctermproduct (TSearchctermproduct value)
	Assign a value to Searchctermproduct data member. More...
TSearchctermproduct &	CMSSearchSettings_Base::SetSearchctermproduct (void)
	Assign a value to Searchctermproduct data member. More...
bool	CMSSearchSettings_Base::IsSetMaxproductions (void) const
	max number of ions in each series (0=all) Check if a value has been assigned to Maxproductions data member. More...
bool	CMSSearchSettings_Base::CanGetMaxproductions (void) const
	Check if it is safe to call GetMaxproductions method. More...
void	CMSSearchSettings_Base::ResetMaxproductions (void)
	Reset Maxproductions data member. More...
void	CMSSearchSettings_Base::SetDefaultMaxproductions (void)
	Assign default value to Maxproductions data member. More...
TMaxproductions	CMSSearchSettings_Base::GetMaxproductions (void) const
	Get the Maxproductions member data. More...
void	CMSSearchSettings_Base::SetMaxproductions (TMaxproductions value)
	Assign a value to Maxproductions data member. More...
TMaxproductions &	CMSSearchSettings_Base::SetMaxproductions (void)
	Assign a value to Maxproductions data member. More...
bool	CMSSearchSettings_Base::IsSetMinnoenzyme (void) const
	min number of AA in peptide for noenzyme search Check if a value has been assigned to Minnoenzyme data member. More...
bool	CMSSearchSettings_Base::CanGetMinnoenzyme (void) const
	Check if it is safe to call GetMinnoenzyme method. More...
void	CMSSearchSettings_Base::ResetMinnoenzyme (void)
	Reset Minnoenzyme data member. More...
void	CMSSearchSettings_Base::SetDefaultMinnoenzyme (void)
	Assign default value to Minnoenzyme data member. More...
TMinnoenzyme	CMSSearchSettings_Base::GetMinnoenzyme (void) const
	Get the Minnoenzyme member data. More...
void	CMSSearchSettings_Base::SetMinnoenzyme (TMinnoenzyme value)
	Assign a value to Minnoenzyme data member. More...
TMinnoenzyme &	CMSSearchSettings_Base::SetMinnoenzyme (void)
	Assign a value to Minnoenzyme data member. More...
bool	CMSSearchSettings_Base::IsSetMaxnoenzyme (void) const
	max number of AA in peptide for noenzyme search (0=none) Check if a value has been assigned to Maxnoenzyme data member. More...
bool	CMSSearchSettings_Base::CanGetMaxnoenzyme (void) const
	Check if it is safe to call GetMaxnoenzyme method. More...
void	CMSSearchSettings_Base::ResetMaxnoenzyme (void)
	Reset Maxnoenzyme data member. More...
void	CMSSearchSettings_Base::SetDefaultMaxnoenzyme (void)
	Assign default value to Maxnoenzyme data member. More...
TMaxnoenzyme	CMSSearchSettings_Base::GetMaxnoenzyme (void) const
	Get the Maxnoenzyme member data. More...
void	CMSSearchSettings_Base::SetMaxnoenzyme (TMaxnoenzyme value)
	Assign a value to Maxnoenzyme data member. More...
TMaxnoenzyme &	CMSSearchSettings_Base::SetMaxnoenzyme (void)
	Assign a value to Maxnoenzyme data member. More...
bool	CMSSearchSettings_Base::IsSetExactmass (void) const
	the threshold in Da for adding neutron Check if a value has been assigned to Exactmass data member. More...
bool	CMSSearchSettings_Base::CanGetExactmass (void) const
	Check if it is safe to call GetExactmass method. More...
void	CMSSearchSettings_Base::ResetExactmass (void)
	Reset Exactmass data member. More...
TExactmass	CMSSearchSettings_Base::GetExactmass (void) const
	Get the Exactmass member data. More...
void	CMSSearchSettings_Base::SetExactmass (TExactmass value)
	Assign a value to Exactmass data member. More...
TExactmass &	CMSSearchSettings_Base::SetExactmass (void)
	Assign a value to Exactmass data member. More...
bool	CMSSearchSettings_Base::IsSetSettingid (void) const
	id of the search settings Check if a value has been assigned to Settingid data member. More...
bool	CMSSearchSettings_Base::CanGetSettingid (void) const
	Check if it is safe to call GetSettingid method. More...
void	CMSSearchSettings_Base::ResetSettingid (void)
	Reset Settingid data member. More...
TSettingid	CMSSearchSettings_Base::GetSettingid (void) const
	Get the Settingid member data. More...
void	CMSSearchSettings_Base::SetSettingid (TSettingid value)
	Assign a value to Settingid data member. More...
TSettingid &	CMSSearchSettings_Base::SetSettingid (void)
	Assign a value to Settingid data member. More...
bool	CMSSearchSettings_Base::IsSetIterativesettings (void) const
	iterative search settings Check if a value has been assigned to Iterativesettings data member. More...
bool	CMSSearchSettings_Base::CanGetIterativesettings (void) const
	Check if it is safe to call GetIterativesettings method. More...
void	CMSSearchSettings_Base::ResetIterativesettings (void)
	Reset Iterativesettings data member. More...
const TIterativesettings &	CMSSearchSettings_Base::GetIterativesettings (void) const
	Get the Iterativesettings member data. More...
void	CMSSearchSettings_Base::SetIterativesettings (TIterativesettings &value)
	Assign a value to Iterativesettings data member. More...
TIterativesettings &	CMSSearchSettings_Base::SetIterativesettings (void)
	Assign a value to Iterativesettings data member. More...
bool	CMSSearchSettings_Base::IsSetPrecursorcull (void) const
	turn on aggressive precursor culling for ETD (0=none) Check if a value has been assigned to Precursorcull data member. More...
bool	CMSSearchSettings_Base::CanGetPrecursorcull (void) const
	Check if it is safe to call GetPrecursorcull method. More...
void	CMSSearchSettings_Base::ResetPrecursorcull (void)
	Reset Precursorcull data member. More...
TPrecursorcull	CMSSearchSettings_Base::GetPrecursorcull (void) const
	Get the Precursorcull member data. More...
void	CMSSearchSettings_Base::SetPrecursorcull (TPrecursorcull value)
	Assign a value to Precursorcull data member. More...
TPrecursorcull &	CMSSearchSettings_Base::SetPrecursorcull (void)
	Assign a value to Precursorcull data member. More...
bool	CMSSearchSettings_Base::IsSetInfiles (void) const
	input files Check if a value has been assigned to Infiles data member. More...
bool	CMSSearchSettings_Base::CanGetInfiles (void) const
	Check if it is safe to call GetInfiles method. More...
void	CMSSearchSettings_Base::ResetInfiles (void)
	Reset Infiles data member. More...
const TInfiles &	CMSSearchSettings_Base::GetInfiles (void) const
	Get the Infiles member data. More...
TInfiles &	CMSSearchSettings_Base::SetInfiles (void)
	Assign a value to Infiles data member. More...
bool	CMSSearchSettings_Base::IsSetOutfiles (void) const
	output files Check if a value has been assigned to Outfiles data member. More...
bool	CMSSearchSettings_Base::CanGetOutfiles (void) const
	Check if it is safe to call GetOutfiles method. More...
void	CMSSearchSettings_Base::ResetOutfiles (void)
	Reset Outfiles data member. More...
const TOutfiles &	CMSSearchSettings_Base::GetOutfiles (void) const
	Get the Outfiles member data. More...
TOutfiles &	CMSSearchSettings_Base::SetOutfiles (void)
	Assign a value to Outfiles data member. More...
bool	CMSSearchSettings_Base::IsSetNocorrelationscore (void) const
	turn on correlation score (1=nocorr) Check if a value has been assigned to Nocorrelationscore data member. More...
bool	CMSSearchSettings_Base::CanGetNocorrelationscore (void) const
	Check if it is safe to call GetNocorrelationscore method. More...
void	CMSSearchSettings_Base::ResetNocorrelationscore (void)
	Reset Nocorrelationscore data member. More...
TNocorrelationscore	CMSSearchSettings_Base::GetNocorrelationscore (void) const
	Get the Nocorrelationscore member data. More...
void	CMSSearchSettings_Base::SetNocorrelationscore (TNocorrelationscore value)
	Assign a value to Nocorrelationscore data member. More...
TNocorrelationscore &	CMSSearchSettings_Base::SetNocorrelationscore (void)
	Assign a value to Nocorrelationscore data member. More...
bool	CMSSearchSettings_Base::IsSetProbfollowingion (void) const
	probability of a consecutive ion (used in correlation) Check if a value has been assigned to Probfollowingion data member. More...
bool	CMSSearchSettings_Base::CanGetProbfollowingion (void) const
	Check if it is safe to call GetProbfollowingion method. More...
void	CMSSearchSettings_Base::ResetProbfollowingion (void)
	Reset Probfollowingion data member. More...
TProbfollowingion	CMSSearchSettings_Base::GetProbfollowingion (void) const
	Get the Probfollowingion member data. More...
void	CMSSearchSettings_Base::SetProbfollowingion (TProbfollowingion value)
	Assign a value to Probfollowingion data member. More...
TProbfollowingion &	CMSSearchSettings_Base::SetProbfollowingion (void)
	Assign a value to Probfollowingion data member. More...
bool	CMSSearchSettings_Base::IsSetNmethionine (void) const
	should nmethionine be cleaved? Check if a value has been assigned to Nmethionine data member. More...
bool	CMSSearchSettings_Base::CanGetNmethionine (void) const
	Check if it is safe to call GetNmethionine method. More...
void	CMSSearchSettings_Base::ResetNmethionine (void)
	Reset Nmethionine data member. More...
TNmethionine	CMSSearchSettings_Base::GetNmethionine (void) const
	Get the Nmethionine member data. More...
void	CMSSearchSettings_Base::SetNmethionine (TNmethionine value)
	Assign a value to Nmethionine data member. More...
TNmethionine &	CMSSearchSettings_Base::SetNmethionine (void)
	Assign a value to Nmethionine data member. More...
bool	CMSSearchSettings_Base::IsSetAutomassadjust (void) const
	fraction allowable adjustment of product mass tolerance Check if a value has been assigned to Automassadjust data member. More...
bool	CMSSearchSettings_Base::CanGetAutomassadjust (void) const
	Check if it is safe to call GetAutomassadjust method. More...
void	CMSSearchSettings_Base::ResetAutomassadjust (void)
	Reset Automassadjust data member. More...
TAutomassadjust	CMSSearchSettings_Base::GetAutomassadjust (void) const
	Get the Automassadjust member data. More...
void	CMSSearchSettings_Base::SetAutomassadjust (TAutomassadjust value)
	Assign a value to Automassadjust data member. More...
TAutomassadjust &	CMSSearchSettings_Base::SetAutomassadjust (void)
	Assign a value to Automassadjust data member. More...
bool	CMSSearchSettings_Base::IsSetLomasscutoff (void) const
	low mass filter in Daltons, unscaled Check if a value has been assigned to Lomasscutoff data member. More...
bool	CMSSearchSettings_Base::CanGetLomasscutoff (void) const
	Check if it is safe to call GetLomasscutoff method. More...
void	CMSSearchSettings_Base::ResetLomasscutoff (void)
	Reset Lomasscutoff data member. More...
TLomasscutoff	CMSSearchSettings_Base::GetLomasscutoff (void) const
	Get the Lomasscutoff member data. More...
void	CMSSearchSettings_Base::SetLomasscutoff (TLomasscutoff value)
	Assign a value to Lomasscutoff data member. More...
TLomasscutoff &	CMSSearchSettings_Base::SetLomasscutoff (void)
	Assign a value to Lomasscutoff data member. More...
bool	CMSSearchSettings_Base::IsSetLibsearchsettings (void) const
	library search settings Check if a value has been assigned to Libsearchsettings data member. More...
bool	CMSSearchSettings_Base::CanGetLibsearchsettings (void) const
	Check if it is safe to call GetLibsearchsettings method. More...
void	CMSSearchSettings_Base::ResetLibsearchsettings (void)
	Reset Libsearchsettings data member. More...
const TLibsearchsettings &	CMSSearchSettings_Base::GetLibsearchsettings (void) const
	Get the Libsearchsettings member data. More...
void	CMSSearchSettings_Base::SetLibsearchsettings (TLibsearchsettings &value)
	Assign a value to Libsearchsettings data member. More...
TLibsearchsettings &	CMSSearchSettings_Base::SetLibsearchsettings (void)
	Assign a value to Libsearchsettings data member. More...
bool	CMSSearchSettings_Base::IsSetNoprolineions (void) const
	which ions to use no proline rule Check if a value has been assigned to Noprolineions data member. More...
bool	CMSSearchSettings_Base::CanGetNoprolineions (void) const
	Check if it is safe to call GetNoprolineions method. More...
void	CMSSearchSettings_Base::ResetNoprolineions (void)
	Reset Noprolineions data member. More...
const TNoprolineions &	CMSSearchSettings_Base::GetNoprolineions (void) const
	Get the Noprolineions member data. More...
TNoprolineions &	CMSSearchSettings_Base::SetNoprolineions (void)
	Assign a value to Noprolineions data member. More...
bool	CMSSearchSettings_Base::IsSetReversesearch (void) const
	do reverse search Check if a value has been assigned to Reversesearch data member. More...
bool	CMSSearchSettings_Base::CanGetReversesearch (void) const
	Check if it is safe to call GetReversesearch method. More...
void	CMSSearchSettings_Base::ResetReversesearch (void)
	Reset Reversesearch data member. More...
TReversesearch	CMSSearchSettings_Base::GetReversesearch (void) const
	Get the Reversesearch member data. More...
void	CMSSearchSettings_Base::SetReversesearch (TReversesearch value)
	Assign a value to Reversesearch data member. More...
TReversesearch &	CMSSearchSettings_Base::SetReversesearch (void)
	Assign a value to Reversesearch data member. More...
bool	CMSSearchSettings_Base::IsSetOthersettings (void) const
	extra search settings Check if a value has been assigned to Othersettings data member. More...
bool	CMSSearchSettings_Base::CanGetOthersettings (void) const
	Check if it is safe to call GetOthersettings method. More...
void	CMSSearchSettings_Base::ResetOthersettings (void)
	Reset Othersettings data member. More...
const TOthersettings &	CMSSearchSettings_Base::GetOthersettings (void) const
	Get the Othersettings member data. More...
TOthersettings &	CMSSearchSettings_Base::SetOthersettings (void)
	Assign a value to Othersettings data member. More...
bool	CMSSearchSettings_Base::IsSetNumisotopes (void) const
	number of isotopic peaks to search when using MSSearchType multiisotope Check if a value has been assigned to Numisotopes data member. More...
bool	CMSSearchSettings_Base::CanGetNumisotopes (void) const
	Check if it is safe to call GetNumisotopes method. More...
void	CMSSearchSettings_Base::ResetNumisotopes (void)
	Reset Numisotopes data member. More...
TNumisotopes	CMSSearchSettings_Base::GetNumisotopes (void) const
	Get the Numisotopes member data. More...
void	CMSSearchSettings_Base::SetNumisotopes (TNumisotopes value)
	Assign a value to Numisotopes data member. More...
TNumisotopes &	CMSSearchSettings_Base::SetNumisotopes (void)
	Assign a value to Numisotopes data member. More...
bool	CMSSearchSettings_Base::IsSetPepppm (void) const
	search precursor as ppm Check if a value has been assigned to Pepppm data member. More...
bool	CMSSearchSettings_Base::CanGetPepppm (void) const
	Check if it is safe to call GetPepppm method. More...
void	CMSSearchSettings_Base::ResetPepppm (void)
	Reset Pepppm data member. More...
TPepppm	CMSSearchSettings_Base::GetPepppm (void) const
	Get the Pepppm member data. More...
void	CMSSearchSettings_Base::SetPepppm (TPepppm value)
	Assign a value to Pepppm data member. More...
TPepppm &	CMSSearchSettings_Base::SetPepppm (void)
	Assign a value to Pepppm data member. More...
bool	CMSSearchSettings_Base::IsSetMsmsppm (void) const
	search product as ppm Check if a value has been assigned to Msmsppm data member. More...
bool	CMSSearchSettings_Base::CanGetMsmsppm (void) const
	Check if it is safe to call GetMsmsppm method. More...
void	CMSSearchSettings_Base::ResetMsmsppm (void)
	Reset Msmsppm data member. More...
TMsmsppm	CMSSearchSettings_Base::GetMsmsppm (void) const
	Get the Msmsppm member data. More...
void	CMSSearchSettings_Base::SetMsmsppm (TMsmsppm value)
	Assign a value to Msmsppm data member. More...
TMsmsppm &	CMSSearchSettings_Base::SetMsmsppm (void)
	Assign a value to Msmsppm data member. More...
bool	CMSSearchSettings_Base::IsSetReportedhitcount (void) const
	the maximum number of hits to report per spectrum, 0=all Check if a value has been assigned to Reportedhitcount data member. More...
bool	CMSSearchSettings_Base::CanGetReportedhitcount (void) const
	Check if it is safe to call GetReportedhitcount method. More...
void	CMSSearchSettings_Base::ResetReportedhitcount (void)
	Reset Reportedhitcount data member. More...
TReportedhitcount	CMSSearchSettings_Base::GetReportedhitcount (void) const
	Get the Reportedhitcount member data. More...
void	CMSSearchSettings_Base::SetReportedhitcount (TReportedhitcount value)
	Assign a value to Reportedhitcount data member. More...
TReportedhitcount &	CMSSearchSettings_Base::SetReportedhitcount (void)
	Assign a value to Reportedhitcount data member. More...
virtual void	CMSSearchSettings_Base::Reset (void)
	Reset the whole object. More...
	CMSSearchSettings_Base::CMSSearchSettings_Base (const CMSSearchSettings_Base &)
CMSSearchSettings_Base &	CMSSearchSettings_Base::operator= (const CMSSearchSettings_Base &)
	CMSSearchSettingsSet::CMSSearchSettingsSet (void)
	CMSSearchSettingsSet::~CMSSearchSettingsSet (void)
	CMSSearchSettingsSet::CMSSearchSettingsSet (const CMSSearchSettingsSet &value)
CMSSearchSettingsSet &	CMSSearchSettingsSet::operator= (const CMSSearchSettingsSet &value)
	CMSSearchSettingsSet_Base::CMSSearchSettingsSet_Base (void)
virtual	CMSSearchSettingsSet_Base::~CMSSearchSettingsSet_Base (void)
	CMSSearchSettingsSet_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSSearchSettingsSet_Base::IsSet (void) const
	Check if a value has been assigned to data member. More...
bool	CMSSearchSettingsSet_Base::CanGet (void) const
	Check if it is safe to call Get method. More...
void	CMSSearchSettingsSet_Base::Reset (void)
	Reset data member. More...
const Tdata &	CMSSearchSettingsSet_Base::Get (void) const
	Get the member data. More...
Tdata &	CMSSearchSettingsSet_Base::Set (void)
	Assign a value to data member. More...
	CMSSearchSettingsSet_Base::operator const Tdata & (void) const
	Conversion operator to 'const Tdata' type. More...
	CMSSearchSettingsSet_Base::operator Tdata & (void)
	Conversion operator to 'Tdata' type. More...
	CMSSearchSettingsSet_Base::CMSSearchSettingsSet_Base (const CMSSearchSettingsSet_Base &)
CMSSearchSettingsSet_Base &	CMSSearchSettingsSet_Base::operator= (const CMSSearchSettingsSet_Base &)
	CMSSpectrum::CMSSpectrum (void)
	CMSSpectrum::~CMSSpectrum (void)
	CMSSpectrum::CMSSpectrum (const CMSSpectrum &value)
CMSSpectrum &	CMSSpectrum::operator= (const CMSSpectrum &value)
	CMSSpectrum_Base::CMSSpectrum_Base (void)
virtual	CMSSpectrum_Base::~CMSSpectrum_Base (void)
	CMSSpectrum_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSSpectrum_Base::IsSetNumber (void) const
	unique number of spectrum Check if a value has been assigned to Number data member. More...
bool	CMSSpectrum_Base::CanGetNumber (void) const
	Check if it is safe to call GetNumber method. More...
void	CMSSpectrum_Base::ResetNumber (void)
	Reset Number data member. More...
TNumber	CMSSpectrum_Base::GetNumber (void) const
	Get the Number member data. More...
void	CMSSpectrum_Base::SetNumber (TNumber value)
	Assign a value to Number data member. More...
TNumber &	CMSSpectrum_Base::SetNumber (void)
	Assign a value to Number data member. More...
bool	CMSSpectrum_Base::IsSetCharge (void) const
	may be more than one if unknown Check if a value has been assigned to Charge data member. More...
bool	CMSSpectrum_Base::CanGetCharge (void) const
	Check if it is safe to call GetCharge method. More...
void	CMSSpectrum_Base::ResetCharge (void)
	Reset Charge data member. More...
const TCharge &	CMSSpectrum_Base::GetCharge (void) const
	Get the Charge member data. More...
TCharge &	CMSSpectrum_Base::SetCharge (void)
	Assign a value to Charge data member. More...
bool	CMSSpectrum_Base::IsSetPrecursormz (void) const
	scaled precursor m/z, scale is in MSSearchSettings Check if a value has been assigned to Precursormz data member. More...
bool	CMSSpectrum_Base::CanGetPrecursormz (void) const
	Check if it is safe to call GetPrecursormz method. More...
void	CMSSpectrum_Base::ResetPrecursormz (void)
	Reset Precursormz data member. More...
TPrecursormz	CMSSpectrum_Base::GetPrecursormz (void) const
	Get the Precursormz member data. More...
void	CMSSpectrum_Base::SetPrecursormz (TPrecursormz value)
	Assign a value to Precursormz data member. More...
TPrecursormz &	CMSSpectrum_Base::SetPrecursormz (void)
	Assign a value to Precursormz data member. More...
bool	CMSSpectrum_Base::IsSetMz (void) const
	scaled product m/z Check if a value has been assigned to Mz data member. More...
bool	CMSSpectrum_Base::CanGetMz (void) const
	Check if it is safe to call GetMz method. More...
void	CMSSpectrum_Base::ResetMz (void)
	Reset Mz data member. More...
const TMz &	CMSSpectrum_Base::GetMz (void) const
	Get the Mz member data. More...
TMz &	CMSSpectrum_Base::SetMz (void)
	Assign a value to Mz data member. More...
bool	CMSSpectrum_Base::IsSetAbundance (void) const
	scaled product abundance Check if a value has been assigned to Abundance data member. More...
bool	CMSSpectrum_Base::CanGetAbundance (void) const
	Check if it is safe to call GetAbundance method. More...
void	CMSSpectrum_Base::ResetAbundance (void)
	Reset Abundance data member. More...
const TAbundance &	CMSSpectrum_Base::GetAbundance (void) const
	Get the Abundance member data. More...
TAbundance &	CMSSpectrum_Base::SetAbundance (void)
	Assign a value to Abundance data member. More...
bool	CMSSpectrum_Base::IsSetIscale (void) const
	abundance scale, float to integer Check if a value has been assigned to Iscale data member. More...
bool	CMSSpectrum_Base::CanGetIscale (void) const
	Check if it is safe to call GetIscale method. More...
void	CMSSpectrum_Base::ResetIscale (void)
	Reset Iscale data member. More...
TIscale	CMSSpectrum_Base::GetIscale (void) const
	Get the Iscale member data. More...
void	CMSSpectrum_Base::SetIscale (TIscale value)
	Assign a value to Iscale data member. More...
TIscale &	CMSSpectrum_Base::SetIscale (void)
	Assign a value to Iscale data member. More...
bool	CMSSpectrum_Base::IsSetIds (void) const
	ids/filenames Check if a value has been assigned to Ids data member. More...
bool	CMSSpectrum_Base::CanGetIds (void) const
	Check if it is safe to call GetIds method. More...
void	CMSSpectrum_Base::ResetIds (void)
	Reset Ids data member. More...
const TIds &	CMSSpectrum_Base::GetIds (void) const
	Get the Ids member data. More...
TIds &	CMSSpectrum_Base::SetIds (void)
	Assign a value to Ids data member. More...
bool	CMSSpectrum_Base::IsSetNamevalue (void) const
	extra info: retention times, etc. More...
bool	CMSSpectrum_Base::CanGetNamevalue (void) const
	Check if it is safe to call GetNamevalue method. More...
void	CMSSpectrum_Base::ResetNamevalue (void)
	Reset Namevalue data member. More...
const TNamevalue &	CMSSpectrum_Base::GetNamevalue (void) const
	Get the Namevalue member data. More...
TNamevalue &	CMSSpectrum_Base::SetNamevalue (void)
	Assign a value to Namevalue data member. More...
virtual void	CMSSpectrum_Base::Reset (void)
	Reset the whole object. More...
	CMSSpectrum_Base::CMSSpectrum_Base (const CMSSpectrum_Base &)
CMSSpectrum_Base &	CMSSpectrum_Base::operator= (const CMSSpectrum_Base &)
	CMSSpectrumset::CMSSpectrumset (void)
	CMSSpectrumset::~CMSSpectrumset (void)
	CMSSpectrumset::CMSSpectrumset (const CMSSpectrumset &value)
CMSSpectrumset &	CMSSpectrumset::operator= (const CMSSpectrumset &value)
	CMSSpectrumset_Base::CMSSpectrumset_Base (void)
virtual	CMSSpectrumset_Base::~CMSSpectrumset_Base (void)
	CMSSpectrumset_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CMSSpectrumset_Base::IsSet (void) const
	Check if a value has been assigned to data member. More...
bool	CMSSpectrumset_Base::CanGet (void) const
	Check if it is safe to call Get method. More...
void	CMSSpectrumset_Base::Reset (void)
	Reset data member. More...
const Tdata &	CMSSpectrumset_Base::Get (void) const
	Get the member data. More...
Tdata &	CMSSpectrumset_Base::Set (void)
	Assign a value to data member. More...
	CMSSpectrumset_Base::operator const Tdata & (void) const
	Conversion operator to 'const Tdata' type. More...
	CMSSpectrumset_Base::operator Tdata & (void)
	Conversion operator to 'Tdata' type. More...
	CMSSpectrumset_Base::CMSSpectrumset_Base (const CMSSpectrumset_Base &)
CMSSpectrumset_Base &	CMSSpectrumset_Base::operator= (const CMSSpectrumset_Base &)
	CNameValue::CNameValue (void)
	CNameValue::~CNameValue (void)
	CNameValue::CNameValue (const CNameValue &value)
CNameValue &	CNameValue::operator= (const CNameValue &value)
	CNameValue_Base::CNameValue_Base (void)
virtual	CNameValue_Base::~CNameValue_Base (void)
	CNameValue_Base::DECLARE_INTERNAL_TYPE_INFO ()
bool	CNameValue_Base::IsSetName (void) const
	Check if a value has been assigned to Name data member. More...
bool	CNameValue_Base::CanGetName (void) const
	Check if it is safe to call GetName method. More...
void	CNameValue_Base::ResetName (void)
	Reset Name data member. More...
const TName &	CNameValue_Base::GetName (void) const
	Get the Name member data. More...
void	CNameValue_Base::SetName (const TName &value)
	Assign a value to Name data member. More...
void	CNameValue_Base::SetName (TName &&value)
TName &	CNameValue_Base::SetName (void)
	Assign a value to Name data member. More...
bool	CNameValue_Base::IsSetValue (void) const
	Check if a value has been assigned to Value data member. More...
bool	CNameValue_Base::CanGetValue (void) const
	Check if it is safe to call GetValue method. More...
void	CNameValue_Base::ResetValue (void)
	Reset Value data member. More...
const TValue &	CNameValue_Base::GetValue (void) const
	Get the Value member data. More...
void	CNameValue_Base::SetValue (const TValue &value)
	Assign a value to Value data member. More...
void	CNameValue_Base::SetValue (TValue &&value)
TValue &	CNameValue_Base::SetValue (void)
	Assign a value to Value data member. More...
virtual void	CNameValue_Base::Reset (void)
	Reset the whole object. More...
	CNameValue_Base::CNameValue_Base (const CNameValue_Base &)
CNameValue_Base &	CNameValue_Base::operator= (const CNameValue_Base &)

Variables
Uint4	CMSBioseq_Base::m_set_State [1]
int	CMSBioseq_Base::m_Oid
CRef< TSeq >	CMSBioseq_Base::m_Seq
Uint4	CMSBioseqSet_Base::m_set_State [1]
list< CRef< CMSBioseq > >	CMSBioseqSet_Base::m_data
Uint4	CMSChargeHandle_Base::m_set_State [1]
int	CMSChargeHandle_Base::m_Calcplusone
int	CMSChargeHandle_Base::m_Calccharge
int	CMSChargeHandle_Base::m_Mincharge
int	CMSChargeHandle_Base::m_Maxcharge
int	CMSChargeHandle_Base::m_Considermult
double	CMSChargeHandle_Base::m_Plusone
int	CMSChargeHandle_Base::m_Maxproductcharge
bool	CMSChargeHandle_Base::m_Prodlesspre
int	CMSChargeHandle_Base::m_Negative
Uint4	CMSHits_Base::m_set_State [1]
double	CMSHits_Base::m_Evalue
double	CMSHits_Base::m_Pvalue
int	CMSHits_Base::m_Charge
list< CRef< CMSPepHit > >	CMSHits_Base::m_Pephits
list< CRef< CMSMZHit > >	CMSHits_Base::m_Mzhits
string	CMSHits_Base::m_Pepstring
int	CMSHits_Base::m_Mass
list< CRef< CMSModHit > >	CMSHits_Base::m_Mods
string	CMSHits_Base::m_Pepstart
string	CMSHits_Base::m_Pepstop
int	CMSHits_Base::m_Protlength
int	CMSHits_Base::m_Theomass
int	CMSHits_Base::m_Oid
list< CRef< CMSScoreSet > >	CMSHits_Base::m_Scores
string	CMSHits_Base::m_Libaccession
Uint4	CMSHitSet_Base::m_set_State [1]
int	CMSHitSet_Base::m_Number
int	CMSHitSet_Base::m_Error
vector< CRef< CMSHits > >	CMSHitSet_Base::m_Hits
list< string >	CMSHitSet_Base::m_Ids
list< CRef< CNameValue > >	CMSHitSet_Base::m_Namevalue
int	CMSHitSet_Base::m_Settingid
int	CMSHitSet_Base::m_Userannotation
Uint4	CMSImmonium_Base::m_set_State [1]
string	CMSImmonium_Base::m_Parent
string	CMSImmonium_Base::m_Product
Uint4	CMSInFile_Base::m_set_State [1]
string	CMSInFile_Base::m_Infile
int	CMSInFile_Base::m_Infiletype
Uint4	CMSIon_Base::m_set_State [1]
int	CMSIon_Base::m_Neutralloss
int	CMSIon_Base::m_Isotope
string	CMSIon_Base::m_Internal
CRef< TImmonium >	CMSIon_Base::m_Immonium
Uint4	CMSIonAnnot_Base::m_set_State [1]
bool	CMSIonAnnot_Base::m_Suspect
double	CMSIonAnnot_Base::m_Massdiff
bool	CMSIonAnnot_Base::m_Missingisotope
Uint4	CMSIterativeSettings_Base::m_set_State [1]
double	CMSIterativeSettings_Base::m_Researchthresh
double	CMSIterativeSettings_Base::m_Subsetthresh
double	CMSIterativeSettings_Base::m_Replacethresh
Uint4	CMSLibrarySettings_Base::m_set_State [1]
list< string >	CMSLibrarySettings_Base::m_Libnames
bool	CMSLibrarySettings_Base::m_Presearch
bool	CMSLibrarySettings_Base::m_Useomssascore
bool	CMSLibrarySettings_Base::m_Usereplicatescore
bool	CMSLibrarySettings_Base::m_Qtofscore
Uint4	CMSMassSet_Base::m_set_State [1]
double	CMSMassSet_Base::m_Monomass
double	CMSMassSet_Base::m_Averagemass
double	CMSMassSet_Base::m_N15mass
Uint4	CMSModHit_Base::m_set_State [1]
int	CMSModHit_Base::m_Site
int	CMSModHit_Base::m_Modtype
Uint4	CMSModSpec_Base::m_set_State [1]
int	CMSModSpec_Base::m_Mod
int	CMSModSpec_Base::m_Type
string	CMSModSpec_Base::m_Name
double	CMSModSpec_Base::m_Monomass
double	CMSModSpec_Base::m_Averagemass
double	CMSModSpec_Base::m_N15mass
list< string >	CMSModSpec_Base::m_Residues
CRef< TNeutralloss >	CMSModSpec_Base::m_Neutralloss
int	CMSModSpec_Base::m_Unimod
string	CMSModSpec_Base::m_Psi_ms
Uint4	CMSModSpecSet_Base::m_set_State [1]
list< CRef< CMSModSpec > >	CMSModSpecSet_Base::m_data
Uint4	CMSMZHit_Base::m_set_State [1]
int	CMSMZHit_Base::m_Ion
int	CMSMZHit_Base::m_Charge
int	CMSMZHit_Base::m_Number
int	CMSMZHit_Base::m_Mz
int	CMSMZHit_Base::m_Index
CRef< TMoreion >	CMSMZHit_Base::m_Moreion
CRef< TAnnotation >	CMSMZHit_Base::m_Annotation
Uint4	CMSOutFile_Base::m_set_State [1]
string	CMSOutFile_Base::m_Outfile
int	CMSOutFile_Base::m_Outfiletype
bool	CMSOutFile_Base::m_Includerequest
Uint4	CMSPepHit_Base::m_set_State [1]
int	CMSPepHit_Base::m_Start
int	CMSPepHit_Base::m_Stop
ncbi::TIntId	CMSPepHit_Base::m_Gi
string	CMSPepHit_Base::m_Accession
string	CMSPepHit_Base::m_Defline
int	CMSPepHit_Base::m_Protlength
int	CMSPepHit_Base::m_Oid
bool	CMSPepHit_Base::m_Reversed
string	CMSPepHit_Base::m_Pepstart
string	CMSPepHit_Base::m_Pepstop
Uint4	CMSRequest_Base::m_set_State [1]
CRef< TSpectra >	CMSRequest_Base::m_Spectra
CRef< TSettings >	CMSRequest_Base::m_Settings
string	CMSRequest_Base::m_Rid
CRef< TMoresettings >	CMSRequest_Base::m_Moresettings
CRef< TModset >	CMSRequest_Base::m_Modset
Uint4	CMSResponse_Base::m_set_State [1]
vector< CRef< CMSHitSet > >	CMSResponse_Base::m_Hitsets
int	CMSResponse_Base::m_Scale
string	CMSResponse_Base::m_Rid
int	CMSResponse_Base::m_Error
string	CMSResponse_Base::m_Version
string	CMSResponse_Base::m_Email
int	CMSResponse_Base::m_Dbversion
CRef< TBioseqs >	CMSResponse_Base::m_Bioseqs
Uint4	CMSScoreSet_Base::m_set_State [1]
string	CMSScoreSet_Base::m_Name
double	CMSScoreSet_Base::m_Value
Uint4	CMSSearch_Base::m_set_State [1]
list< CRef< CMSRequest > >	CMSSearch_Base::m_Request
list< CRef< CMSResponse > >	CMSSearch_Base::m_Response
Uint4	CMSSearchSettings_Base::m_set_State [4]
int	CMSSearchSettings_Base::m_Precursorsearchtype
int	CMSSearchSettings_Base::m_Productsearchtype
list< int >	CMSSearchSettings_Base::m_Ionstosearch
double	CMSSearchSettings_Base::m_Peptol
double	CMSSearchSettings_Base::m_Msmstol
int	CMSSearchSettings_Base::m_Zdep
double	CMSSearchSettings_Base::m_Cutoff
double	CMSSearchSettings_Base::m_Cutlo
double	CMSSearchSettings_Base::m_Cuthi
double	CMSSearchSettings_Base::m_Cutinc
int	CMSSearchSettings_Base::m_Singlewin
int	CMSSearchSettings_Base::m_Doublewin
int	CMSSearchSettings_Base::m_Singlenum
int	CMSSearchSettings_Base::m_Doublenum
list< int >	CMSSearchSettings_Base::m_Fixed
list< int >	CMSSearchSettings_Base::m_Variable
int	CMSSearchSettings_Base::m_Enzyme
int	CMSSearchSettings_Base::m_Missedcleave
int	CMSSearchSettings_Base::m_Hitlistlen
string	CMSSearchSettings_Base::m_Db
int	CMSSearchSettings_Base::m_Tophitnum
int	CMSSearchSettings_Base::m_Minhit
int	CMSSearchSettings_Base::m_Minspectra
int	CMSSearchSettings_Base::m_Scale
int	CMSSearchSettings_Base::m_Maxmods
list< int >	CMSSearchSettings_Base::m_Taxids
CRef< TChargehandling >	CMSSearchSettings_Base::m_Chargehandling
CRef< TUsermods >	CMSSearchSettings_Base::m_Usermods
int	CMSSearchSettings_Base::m_Pseudocount
int	CMSSearchSettings_Base::m_Searchb1
int	CMSSearchSettings_Base::m_Searchctermproduct
int	CMSSearchSettings_Base::m_Maxproductions
int	CMSSearchSettings_Base::m_Minnoenzyme
int	CMSSearchSettings_Base::m_Maxnoenzyme
double	CMSSearchSettings_Base::m_Exactmass
int	CMSSearchSettings_Base::m_Settingid
CRef< TIterativesettings >	CMSSearchSettings_Base::m_Iterativesettings
int	CMSSearchSettings_Base::m_Precursorcull
list< CRef< CMSInFile > >	CMSSearchSettings_Base::m_Infiles
list< CRef< CMSOutFile > >	CMSSearchSettings_Base::m_Outfiles
int	CMSSearchSettings_Base::m_Nocorrelationscore
double	CMSSearchSettings_Base::m_Probfollowingion
bool	CMSSearchSettings_Base::m_Nmethionine
double	CMSSearchSettings_Base::m_Automassadjust
double	CMSSearchSettings_Base::m_Lomasscutoff
CRef< TLibsearchsettings >	CMSSearchSettings_Base::m_Libsearchsettings
list< int >	CMSSearchSettings_Base::m_Noprolineions
bool	CMSSearchSettings_Base::m_Reversesearch
list< CRef< CNameValue > >	CMSSearchSettings_Base::m_Othersettings
int	CMSSearchSettings_Base::m_Numisotopes
bool	CMSSearchSettings_Base::m_Pepppm
bool	CMSSearchSettings_Base::m_Msmsppm
int	CMSSearchSettings_Base::m_Reportedhitcount
Uint4	CMSSearchSettingsSet_Base::m_set_State [1]
list< CRef< CMSSearchSettings > >	CMSSearchSettingsSet_Base::m_data
Uint4	CMSSpectrum_Base::m_set_State [1]
int	CMSSpectrum_Base::m_Number
list< int >	CMSSpectrum_Base::m_Charge
int	CMSSpectrum_Base::m_Precursormz
vector< int >	CMSSpectrum_Base::m_Mz
vector< int >	CMSSpectrum_Base::m_Abundance
double	CMSSpectrum_Base::m_Iscale
list< string >	CMSSpectrum_Base::m_Ids
list< CRef< CNameValue > >	CMSSpectrum_Base::m_Namevalue
Uint4	CMSSpectrumset_Base::m_set_State [1]
list< CRef< CMSSpectrum > >	CMSSpectrumset_Base::m_data
Uint4	CNameValue_Base::m_set_State [1]
string	CNameValue_Base::m_Name
string	CNameValue_Base::m_Value

Detailed Description

Typedef Documentation

TAbundance

typedef vector< int > CMSSpectrum_Base::TAbundance

Definition at line 96 of file MSSpectrum_.hpp.

TAccession

typedef string CMSPepHit_Base::TAccession

Definition at line 90 of file MSPepHit_.hpp.

TAnnotation

typedef CMSIonAnnot CMSMZHit_Base::TAnnotation

Definition at line 97 of file MSMZHit_.hpp.

TAutomassadjust

typedef double CMSSearchSettings_Base::TAutomassadjust

Definition at line 145 of file MSSearchSettings_.hpp.

TAveragemass [1/2]

typedef double CMSMassSet_Base::TAveragemass

Definition at line 83 of file MSMassSet_.hpp.

TAveragemass [2/2]

typedef double CMSModSpec_Base::TAveragemass

Definition at line 97 of file MSModSpec_.hpp.

TBioseqs

typedef CMSBioseqSet CMSResponse_Base::TBioseqs

Definition at line 100 of file MSResponse_.hpp.

TCalccharge

typedef int CMSChargeHandle_Base::TCalccharge

Definition at line 88 of file MSChargeHandle_.hpp.

TCalcplusone

typedef int CMSChargeHandle_Base::TCalcplusone

Definition at line 87 of file MSChargeHandle_.hpp.

TCharge [1/3]

typedef int CMSHits_Base::TCharge

Definition at line 96 of file MSHits_.hpp.

TCharge [2/3]

typedef int CMSMZHit_Base::TCharge

Definition at line 92 of file MSMZHit_.hpp.

TCharge [3/3]

typedef list< int > CMSSpectrum_Base::TCharge

Definition at line 93 of file MSSpectrum_.hpp.

TChargehandling

typedef CMSChargeHandle CMSSearchSettings_Base::TChargehandling

Definition at line 128 of file MSSearchSettings_.hpp.

TConsidermult

typedef int CMSChargeHandle_Base::TConsidermult

Definition at line 91 of file MSChargeHandle_.hpp.

TCuthi

typedef double CMSSearchSettings_Base::TCuthi

Definition at line 110 of file MSSearchSettings_.hpp.

TCutinc

typedef double CMSSearchSettings_Base::TCutinc

Definition at line 111 of file MSSearchSettings_.hpp.

TCutlo

typedef double CMSSearchSettings_Base::TCutlo

Definition at line 109 of file MSSearchSettings_.hpp.

TCutoff

typedef double CMSSearchSettings_Base::TCutoff

Definition at line 108 of file MSSearchSettings_.hpp.

Tdata [1/4]

typedef list< CRef< CMSBioseq > > CMSBioseqSet_Base::Tdata

Definition at line 89 of file MSBioseqSet_.hpp.

Tdata [2/4]

typedef list< CRef< CMSModSpec > > CMSModSpecSet_Base::Tdata

Definition at line 90 of file MSModSpecSet_.hpp.

Tdata [3/4]

typedef list< CRef< CMSSearchSettings > > CMSSearchSettingsSet_Base::Tdata

Definition at line 89 of file MSSearchSettingsSet_.hpp.

Tdata [4/4]

typedef list< CRef< CMSSpectrum > > CMSSpectrumset_Base::Tdata

Definition at line 90 of file MSSpectrumset_.hpp.

TDb

typedef string CMSSearchSettings_Base::TDb

Definition at line 121 of file MSSearchSettings_.hpp.

TDbversion

typedef int CMSResponse_Base::TDbversion

Definition at line 99 of file MSResponse_.hpp.

TDefline

typedef string CMSPepHit_Base::TDefline

Definition at line 91 of file MSPepHit_.hpp.

TDoublenum

typedef int CMSSearchSettings_Base::TDoublenum

Definition at line 115 of file MSSearchSettings_.hpp.

TDoublewin

typedef int CMSSearchSettings_Base::TDoublewin

Definition at line 113 of file MSSearchSettings_.hpp.

TEmail

typedef string CMSResponse_Base::TEmail

Definition at line 98 of file MSResponse_.hpp.

TEnzyme

typedef int CMSSearchSettings_Base::TEnzyme

Definition at line 118 of file MSSearchSettings_.hpp.

TError [1/2]

typedef int CMSHitSet_Base::TError

Definition at line 96 of file MSHitSet_.hpp.

TError [2/2]

typedef int CMSResponse_Base::TError

Definition at line 96 of file MSResponse_.hpp.

TEvalue

typedef double CMSHits_Base::TEvalue

Definition at line 94 of file MSHits_.hpp.

TExactmass

typedef double CMSSearchSettings_Base::TExactmass

Definition at line 136 of file MSSearchSettings_.hpp.

TFixed

typedef list< int > CMSSearchSettings_Base::TFixed

Definition at line 116 of file MSSearchSettings_.hpp.

TGi

typedef NCBI_NS_NCBI::TGi CMSPepHit_Base::TGi

Definition at line 89 of file MSPepHit_.hpp.

THitlistlen

typedef int CMSSearchSettings_Base::THitlistlen

Definition at line 120 of file MSSearchSettings_.hpp.

THits

typedef vector< CRef< CMSHits > > CMSHitSet_Base::THits

Definition at line 97 of file MSHitSet_.hpp.

THitsets

typedef vector< CRef< CMSHitSet > > CMSResponse_Base::THitsets

Definition at line 93 of file MSResponse_.hpp.

TIds [1/2]

typedef list< string > CMSHitSet_Base::TIds

Definition at line 98 of file MSHitSet_.hpp.

TIds [2/2]

typedef list< string > CMSSpectrum_Base::TIds

Definition at line 98 of file MSSpectrum_.hpp.

TImmonium

typedef CMSImmonium CMSIon_Base::TImmonium

Definition at line 95 of file MSIon_.hpp.

TIncluderequest

typedef bool CMSOutFile_Base::TIncluderequest

Definition at line 88 of file MSOutFile_.hpp.

TIndex

typedef int CMSMZHit_Base::TIndex

Definition at line 95 of file MSMZHit_.hpp.

TInfile

typedef string CMSInFile_Base::TInfile

Definition at line 86 of file MSInFile_.hpp.

TInfiles

typedef list< CRef< CMSInFile > > CMSSearchSettings_Base::TInfiles

Definition at line 140 of file MSSearchSettings_.hpp.

TInfiletype

typedef int CMSInFile_Base::TInfiletype

Definition at line 87 of file MSInFile_.hpp.

TInternal

typedef string CMSIon_Base::TInternal

Definition at line 94 of file MSIon_.hpp.

TIon

typedef int CMSMZHit_Base::TIon

Definition at line 91 of file MSMZHit_.hpp.

TIonstosearch

typedef list< int > CMSSearchSettings_Base::TIonstosearch

Definition at line 104 of file MSSearchSettings_.hpp.

TIscale

typedef double CMSSpectrum_Base::TIscale

Definition at line 97 of file MSSpectrum_.hpp.

TIsotope

typedef int CMSIon_Base::TIsotope

Definition at line 93 of file MSIon_.hpp.

TIterativesettings

typedef CMSIterativeSettings CMSSearchSettings_Base::TIterativesettings

Definition at line 138 of file MSSearchSettings_.hpp.

TLibaccession

typedef string CMSHits_Base::TLibaccession

Definition at line 108 of file MSHits_.hpp.

TLibnames

typedef list< string > CMSLibrarySettings_Base::TLibnames

Definition at line 87 of file MSLibrarySettings_.hpp.

TLibsearchsettings

typedef CMSLibrarySettings CMSSearchSettings_Base::TLibsearchsettings

Definition at line 147 of file MSSearchSettings_.hpp.

TLomasscutoff

typedef double CMSSearchSettings_Base::TLomasscutoff

Definition at line 146 of file MSSearchSettings_.hpp.

TMass

typedef int CMSHits_Base::TMass

Definition at line 100 of file MSHits_.hpp.

TMassdiff

typedef double CMSIonAnnot_Base::TMassdiff

Definition at line 83 of file MSIonAnnot_.hpp.

TMaxcharge

typedef int CMSChargeHandle_Base::TMaxcharge

Definition at line 90 of file MSChargeHandle_.hpp.

TMaxmods

typedef int CMSSearchSettings_Base::TMaxmods

Definition at line 126 of file MSSearchSettings_.hpp.

TMaxnoenzyme

typedef int CMSSearchSettings_Base::TMaxnoenzyme

Definition at line 135 of file MSSearchSettings_.hpp.

TMaxproductcharge

typedef int CMSChargeHandle_Base::TMaxproductcharge

Definition at line 93 of file MSChargeHandle_.hpp.

TMaxproductions

typedef int CMSSearchSettings_Base::TMaxproductions

Definition at line 133 of file MSSearchSettings_.hpp.

TmemberIndex [1/23]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CMSBioseq_Base::TmemberIndex

Definition at line 95 of file MSBioseq_.hpp.

TmemberIndex [2/23]

typedef Tparent::CMemberIndex<E_memberIndex, 10> CMSChargeHandle_Base::TmemberIndex

Definition at line 110 of file MSChargeHandle_.hpp.

TmemberIndex [3/23]

typedef Tparent::CMemberIndex<E_memberIndex, 16> CMSHits_Base::TmemberIndex

Definition at line 129 of file MSHits_.hpp.

TmemberIndex [4/23]

typedef Tparent::CMemberIndex<E_memberIndex, 8> CMSHitSet_Base::TmemberIndex

Definition at line 114 of file MSHitSet_.hpp.

TmemberIndex [5/23]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CMSImmonium_Base::TmemberIndex

Definition at line 95 of file MSImmonium_.hpp.

TmemberIndex [6/23]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CMSInFile_Base::TmemberIndex

Definition at line 95 of file MSInFile_.hpp.

TmemberIndex [7/23]

typedef Tparent::CMemberIndex<E_memberIndex, 5> CMSIon_Base::TmemberIndex

Definition at line 105 of file MSIon_.hpp.

TmemberIndex [8/23]

typedef Tparent::CMemberIndex<E_memberIndex, 4> CMSIonAnnot_Base::TmemberIndex

Definition at line 93 of file MSIonAnnot_.hpp.

TmemberIndex [9/23]

typedef Tparent::CMemberIndex<E_memberIndex, 4> CMSIterativeSettings_Base::TmemberIndex

Definition at line 93 of file MSIterativeSettings_.hpp.

TmemberIndex [10/23]

typedef Tparent::CMemberIndex<E_memberIndex, 6> CMSLibrarySettings_Base::TmemberIndex

Definition at line 102 of file MSLibrarySettings_.hpp.

TmemberIndex [11/23]

typedef Tparent::CMemberIndex<E_memberIndex, 4> CMSMassSet_Base::TmemberIndex

Definition at line 93 of file MSMassSet_.hpp.

TmemberIndex [12/23]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CMSModHit_Base::TmemberIndex

Definition at line 95 of file MSModHit_.hpp.

TmemberIndex [13/23]

typedef Tparent::CMemberIndex<E_memberIndex, 11> CMSModSpec_Base::TmemberIndex

Definition at line 118 of file MSModSpec_.hpp.

TmemberIndex [14/23]

typedef Tparent::CMemberIndex<E_memberIndex, 8> CMSMZHit_Base::TmemberIndex

Definition at line 110 of file MSMZHit_.hpp.

TmemberIndex [15/23]

typedef Tparent::CMemberIndex<E_memberIndex, 4> CMSOutFile_Base::TmemberIndex

Definition at line 97 of file MSOutFile_.hpp.

TmemberIndex [16/23]

typedef Tparent::CMemberIndex<E_memberIndex, 11> CMSPepHit_Base::TmemberIndex

Definition at line 112 of file MSPepHit_.hpp.

TmemberIndex [17/23]

typedef Tparent::CMemberIndex<E_memberIndex, 6> CMSRequest_Base::TmemberIndex

Definition at line 108 of file MSRequest_.hpp.

TmemberIndex [18/23]

typedef Tparent::CMemberIndex<E_memberIndex, 9> CMSResponse_Base::TmemberIndex

Definition at line 114 of file MSResponse_.hpp.

TmemberIndex [19/23]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CMSScoreSet_Base::TmemberIndex

Definition at line 95 of file MSScoreSet_.hpp.

TmemberIndex [20/23]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CMSSearch_Base::TmemberIndex

Definition at line 100 of file MSSearch_.hpp.

TmemberIndex [21/23]

typedef Tparent::CMemberIndex<E_memberIndex, 54> CMSSearchSettings_Base::TmemberIndex

Definition at line 213 of file MSSearchSettings_.hpp.

TmemberIndex [22/23]

typedef Tparent::CMemberIndex<E_memberIndex, 9> CMSSpectrum_Base::TmemberIndex

Definition at line 113 of file MSSpectrum_.hpp.

TmemberIndex [23/23]

typedef Tparent::CMemberIndex<E_memberIndex, 3> CNameValue_Base::TmemberIndex

Definition at line 95 of file NameValue_.hpp.

TMincharge

typedef int CMSChargeHandle_Base::TMincharge

Definition at line 89 of file MSChargeHandle_.hpp.

TMinhit

typedef int CMSSearchSettings_Base::TMinhit

Definition at line 123 of file MSSearchSettings_.hpp.

TMinnoenzyme

typedef int CMSSearchSettings_Base::TMinnoenzyme

Definition at line 134 of file MSSearchSettings_.hpp.

TMinspectra

typedef int CMSSearchSettings_Base::TMinspectra

Definition at line 124 of file MSSearchSettings_.hpp.

TMissedcleave

typedef int CMSSearchSettings_Base::TMissedcleave

Definition at line 119 of file MSSearchSettings_.hpp.

TMissingisotope

typedef bool CMSIonAnnot_Base::TMissingisotope

Definition at line 84 of file MSIonAnnot_.hpp.

TMod

typedef int CMSModSpec_Base::TMod

Definition at line 93 of file MSModSpec_.hpp.

TMods

typedef list< CRef< CMSModHit > > CMSHits_Base::TMods

Definition at line 101 of file MSHits_.hpp.

TModset

typedef CMSModSpecSet CMSRequest_Base::TModset

Definition at line 97 of file MSRequest_.hpp.

TModtype

typedef int CMSModHit_Base::TModtype

Definition at line 87 of file MSModHit_.hpp.

TMonomass [1/2]

typedef double CMSMassSet_Base::TMonomass

Definition at line 82 of file MSMassSet_.hpp.

TMonomass [2/2]

typedef double CMSModSpec_Base::TMonomass

Definition at line 96 of file MSModSpec_.hpp.

TMoreion

typedef CMSIon CMSMZHit_Base::TMoreion

Definition at line 96 of file MSMZHit_.hpp.

TMoresettings

typedef CMSSearchSettingsSet CMSRequest_Base::TMoresettings

Definition at line 96 of file MSRequest_.hpp.

TMsmsppm

typedef bool CMSSearchSettings_Base::TMsmsppm

Definition at line 153 of file MSSearchSettings_.hpp.

TMsmstol

typedef double CMSSearchSettings_Base::TMsmstol

Definition at line 106 of file MSSearchSettings_.hpp.

TMz [1/2]

typedef int CMSMZHit_Base::TMz

Definition at line 94 of file MSMZHit_.hpp.

TMz [2/2]

typedef vector< int > CMSSpectrum_Base::TMz

Definition at line 95 of file MSSpectrum_.hpp.

TMzhits

typedef list< CRef< CMSMZHit > > CMSHits_Base::TMzhits

Definition at line 98 of file MSHits_.hpp.

TN15mass [1/2]

typedef double CMSMassSet_Base::TN15mass

Definition at line 84 of file MSMassSet_.hpp.

TN15mass [2/2]

typedef double CMSModSpec_Base::TN15mass

Definition at line 98 of file MSModSpec_.hpp.

TName [1/3]

typedef string CMSModSpec_Base::TName

Definition at line 95 of file MSModSpec_.hpp.

TName [2/3]

typedef string CMSScoreSet_Base::TName

Definition at line 86 of file MSScoreSet_.hpp.

TName [3/3]

typedef string CNameValue_Base::TName

Definition at line 86 of file NameValue_.hpp.

TNamevalue [1/2]

typedef list< CRef< CNameValue > > CMSHitSet_Base::TNamevalue

Definition at line 99 of file MSHitSet_.hpp.

TNamevalue [2/2]

typedef list< CRef< CNameValue > > CMSSpectrum_Base::TNamevalue

Definition at line 99 of file MSSpectrum_.hpp.

TNegative

typedef int CMSChargeHandle_Base::TNegative

Definition at line 95 of file MSChargeHandle_.hpp.

TNeutralloss [1/2]

typedef int CMSIon_Base::TNeutralloss

Definition at line 92 of file MSIon_.hpp.

TNeutralloss [2/2]

typedef CMSMassSet CMSModSpec_Base::TNeutralloss

Definition at line 100 of file MSModSpec_.hpp.

TNmethionine

typedef bool CMSSearchSettings_Base::TNmethionine

Definition at line 144 of file MSSearchSettings_.hpp.

TNocorrelationscore

typedef int CMSSearchSettings_Base::TNocorrelationscore

Definition at line 142 of file MSSearchSettings_.hpp.

TNoprolineions

typedef list< int > CMSSearchSettings_Base::TNoprolineions

Definition at line 148 of file MSSearchSettings_.hpp.

TNumber [1/3]

typedef int CMSHitSet_Base::TNumber

Definition at line 95 of file MSHitSet_.hpp.

TNumber [2/3]

typedef int CMSMZHit_Base::TNumber

Definition at line 93 of file MSMZHit_.hpp.

TNumber [3/3]

typedef int CMSSpectrum_Base::TNumber

Definition at line 92 of file MSSpectrum_.hpp.

TNumisotopes

typedef int CMSSearchSettings_Base::TNumisotopes

Definition at line 151 of file MSSearchSettings_.hpp.

TOid [1/3]

typedef int CMSBioseq_Base::TOid

Definition at line 86 of file MSBioseq_.hpp.

TOid [2/3]

typedef int CMSHits_Base::TOid

Definition at line 106 of file MSHits_.hpp.

TOid [3/3]

typedef int CMSPepHit_Base::TOid

Definition at line 93 of file MSPepHit_.hpp.

TOthersettings

typedef list< CRef< CNameValue > > CMSSearchSettings_Base::TOthersettings

Definition at line 150 of file MSSearchSettings_.hpp.

TOutfile

typedef string CMSOutFile_Base::TOutfile

Definition at line 86 of file MSOutFile_.hpp.

TOutfiles

typedef list< CRef< CMSOutFile > > CMSSearchSettings_Base::TOutfiles

Definition at line 141 of file MSSearchSettings_.hpp.

TOutfiletype

typedef int CMSOutFile_Base::TOutfiletype

Definition at line 87 of file MSOutFile_.hpp.

Tparent [1/47]

typedef CMSBioseq_Base CMSBioseq::Tparent

private

Definition at line 67 of file MSBioseq.hpp.

Tparent [2/47]

typedef CSerialObject CMSBioseq_Base::Tparent

private

Definition at line 75 of file MSBioseq_.hpp.

Tparent [3/47]

typedef CSerialObject CMSBioseqSet_Base::Tparent

private

Definition at line 78 of file MSBioseqSet_.hpp.

Tparent [4/47]

typedef CMSChargeHandle_Base CMSChargeHandle::Tparent

private

Definition at line 67 of file MSChargeHandle.hpp.

Tparent [5/47]

typedef CSerialObject CMSChargeHandle_Base::Tparent

private

Definition at line 76 of file MSChargeHandle_.hpp.

Tparent [6/47]

typedef CSerialObject CMSHits_Base::Tparent

private

Definition at line 83 of file MSHits_.hpp.

Tparent [7/47]

typedef CMSHitSet_Base CMSHitSet::Tparent

private

Definition at line 67 of file MSHitSet.hpp.

Tparent [8/47]

typedef CSerialObject CMSHitSet_Base::Tparent

private

Definition at line 84 of file MSHitSet_.hpp.

Tparent [9/47]

typedef CMSImmonium_Base CMSImmonium::Tparent

private

Definition at line 67 of file MSImmonium.hpp.

Tparent [10/47]

typedef CSerialObject CMSImmonium_Base::Tparent

private

Definition at line 75 of file MSImmonium_.hpp.

TParent

typedef string CMSImmonium_Base::TParent

Definition at line 86 of file MSImmonium_.hpp.

Tparent [11/47]

typedef CMSInFile_Base CMSInFile::Tparent

private

Definition at line 67 of file MSInFile.hpp.

Tparent [12/47]

typedef CSerialObject CMSInFile_Base::Tparent

private

Definition at line 75 of file MSInFile_.hpp.

Tparent [13/47]

typedef CMSIon_Base CMSIon::Tparent

private

Definition at line 67 of file MSIon.hpp.

Tparent [14/47]

typedef CSerialObject CMSIon_Base::Tparent

private

Definition at line 81 of file MSIon_.hpp.

Tparent [15/47]

typedef CMSIonAnnot_Base CMSIonAnnot::Tparent

private

Definition at line 67 of file MSIonAnnot.hpp.

Tparent [16/47]

typedef CSerialObject CMSIonAnnot_Base::Tparent

private

Definition at line 71 of file MSIonAnnot_.hpp.

Tparent [17/47]

typedef CMSIterativeSettings_Base CMSIterativeSettings::Tparent

private

Definition at line 67 of file MSIterativeSettings.hpp.

Tparent [18/47]

typedef CSerialObject CMSIterativeSettings_Base::Tparent

private

Definition at line 71 of file MSIterativeSettings_.hpp.

Tparent [19/47]

typedef CMSLibrarySettings_Base CMSLibrarySettings::Tparent

private

Definition at line 67 of file MSLibrarySettings.hpp.

Tparent [20/47]

typedef CSerialObject CMSLibrarySettings_Base::Tparent

private

Definition at line 76 of file MSLibrarySettings_.hpp.

Tparent [21/47]

typedef CMSMassSet_Base CMSMassSet::Tparent

private

Definition at line 67 of file MSMassSet.hpp.

Tparent [22/47]

typedef CSerialObject CMSMassSet_Base::Tparent

private

Definition at line 71 of file MSMassSet_.hpp.

Tparent [23/47]

typedef CMSModHit_Base CMSModHit::Tparent

private

Definition at line 67 of file MSModHit.hpp.

Tparent [24/47]

typedef CSerialObject CMSModHit_Base::Tparent

private

Definition at line 75 of file MSModHit_.hpp.

Tparent [25/47]

typedef CMSModSpec_Base CMSModSpec::Tparent

private

Definition at line 67 of file MSModSpec.hpp.

Tparent [26/47]

typedef CSerialObject CMSModSpec_Base::Tparent

private

Definition at line 82 of file MSModSpec_.hpp.

Tparent [27/47]

typedef CSerialObject CMSModSpecSet_Base::Tparent

private

Definition at line 79 of file MSModSpecSet_.hpp.

Tparent [28/47]

typedef CMSMZHit_Base CMSMZHit::Tparent

private

Definition at line 67 of file MSMZHit.hpp.

Tparent [29/47]

typedef CSerialObject CMSMZHit_Base::Tparent

private

Definition at line 80 of file MSMZHit_.hpp.

Tparent [30/47]

typedef CMSOutFile_Base CMSOutFile::Tparent

private

Definition at line 67 of file MSOutFile.hpp.

Tparent [31/47]

typedef CSerialObject CMSOutFile_Base::Tparent

private

Definition at line 75 of file MSOutFile_.hpp.

Tparent [32/47]

typedef CMSPepHit_Base CMSPepHit::Tparent

private

Definition at line 67 of file MSPepHit.hpp.

Tparent [33/47]

typedef CSerialObject CMSPepHit_Base::Tparent

private

Definition at line 76 of file MSPepHit_.hpp.

Tparent [34/47]

typedef CSerialObject CMSRequest_Base::Tparent

private

Definition at line 82 of file MSRequest_.hpp.

Tparent [35/47]

typedef CSerialObject CMSResponse_Base::Tparent

private

Definition at line 82 of file MSResponse_.hpp.

Tparent [36/47]

typedef CMSScoreSet_Base CMSScoreSet::Tparent

private

Definition at line 67 of file MSScoreSet.hpp.

Tparent [37/47]

typedef CSerialObject CMSScoreSet_Base::Tparent

private

Definition at line 75 of file MSScoreSet_.hpp.

Tparent [38/47]

typedef CSerialObject CMSSearch_Base::Tparent

private

Definition at line 80 of file MSSearch_.hpp.

Tparent [39/47]

typedef CSerialObject CMSSearchSettings_Base::Tparent

private

Definition at line 91 of file MSSearchSettings_.hpp.

Tparent [40/47]

typedef CMSSearchSettingsSet_Base CMSSearchSettingsSet::Tparent

private

Definition at line 67 of file MSSearchSettingsSet.hpp.

Tparent [41/47]

typedef CSerialObject CMSSearchSettingsSet_Base::Tparent

private

Definition at line 78 of file MSSearchSettingsSet_.hpp.

Tparent [42/47]

typedef CMSSpectrum_Base CMSSpectrum::Tparent

private

Definition at line 67 of file MSSpectrum.hpp.

Tparent [43/47]

typedef CSerialObject CMSSpectrum_Base::Tparent

private

Definition at line 81 of file MSSpectrum_.hpp.

Tparent [44/47]

typedef CMSSpectrumset_Base CMSSpectrumset::Tparent

private

Definition at line 67 of file MSSpectrumset.hpp.

Tparent [45/47]

typedef CSerialObject CMSSpectrumset_Base::Tparent

private

Definition at line 79 of file MSSpectrumset_.hpp.

Tparent [46/47]

typedef CNameValue_Base CNameValue::Tparent

private

Definition at line 67 of file NameValue.hpp.

Tparent [47/47]

typedef CSerialObject CNameValue_Base::Tparent

private

Definition at line 75 of file NameValue_.hpp.

TPephits

typedef list< CRef< CMSPepHit > > CMSHits_Base::TPephits

Definition at line 97 of file MSHits_.hpp.

TPepppm

typedef bool CMSSearchSettings_Base::TPepppm

Definition at line 152 of file MSSearchSettings_.hpp.

TPepstart [1/2]

typedef string CMSHits_Base::TPepstart

Definition at line 102 of file MSHits_.hpp.

TPepstart [2/2]

typedef string CMSPepHit_Base::TPepstart

Definition at line 95 of file MSPepHit_.hpp.

TPepstop [1/2]

typedef string CMSHits_Base::TPepstop

Definition at line 103 of file MSHits_.hpp.

TPepstop [2/2]

typedef string CMSPepHit_Base::TPepstop

Definition at line 96 of file MSPepHit_.hpp.

TPepstring

typedef string CMSHits_Base::TPepstring

Definition at line 99 of file MSHits_.hpp.

TPeptol

typedef double CMSSearchSettings_Base::TPeptol

Definition at line 105 of file MSSearchSettings_.hpp.

TPlusone

typedef double CMSChargeHandle_Base::TPlusone

Definition at line 92 of file MSChargeHandle_.hpp.

TPrecursorcull

typedef int CMSSearchSettings_Base::TPrecursorcull

Definition at line 139 of file MSSearchSettings_.hpp.

TPrecursormz

typedef int CMSSpectrum_Base::TPrecursormz

Definition at line 94 of file MSSpectrum_.hpp.

TPrecursorsearchtype

typedef int CMSSearchSettings_Base::TPrecursorsearchtype

Definition at line 102 of file MSSearchSettings_.hpp.

TPresearch

typedef bool CMSLibrarySettings_Base::TPresearch

Definition at line 88 of file MSLibrarySettings_.hpp.

TProbfollowingion

typedef double CMSSearchSettings_Base::TProbfollowingion

Definition at line 143 of file MSSearchSettings_.hpp.

TProdlesspre

typedef bool CMSChargeHandle_Base::TProdlesspre

Definition at line 94 of file MSChargeHandle_.hpp.

TProduct

typedef string CMSImmonium_Base::TProduct

Definition at line 87 of file MSImmonium_.hpp.

TProductsearchtype

typedef int CMSSearchSettings_Base::TProductsearchtype

Definition at line 103 of file MSSearchSettings_.hpp.

TProtlength [1/2]

typedef int CMSHits_Base::TProtlength

Definition at line 104 of file MSHits_.hpp.

TProtlength [2/2]

typedef int CMSPepHit_Base::TProtlength

Definition at line 92 of file MSPepHit_.hpp.

TPseudocount

typedef int CMSSearchSettings_Base::TPseudocount

Definition at line 130 of file MSSearchSettings_.hpp.

TPsi_ms

typedef string CMSModSpec_Base::TPsi_ms

Definition at line 102 of file MSModSpec_.hpp.

TPvalue

typedef double CMSHits_Base::TPvalue

Definition at line 95 of file MSHits_.hpp.

TQtofscore

typedef bool CMSLibrarySettings_Base::TQtofscore

Definition at line 91 of file MSLibrarySettings_.hpp.

TReplacethresh

typedef double CMSIterativeSettings_Base::TReplacethresh

Definition at line 84 of file MSIterativeSettings_.hpp.

TReportedhitcount

typedef int CMSSearchSettings_Base::TReportedhitcount

Definition at line 154 of file MSSearchSettings_.hpp.

TRequest

typedef list< CRef< CMSRequest > > CMSSearch_Base::TRequest

Definition at line 91 of file MSSearch_.hpp.

TResearchthresh

typedef double CMSIterativeSettings_Base::TResearchthresh

Definition at line 82 of file MSIterativeSettings_.hpp.

TResidues

typedef list< string > CMSModSpec_Base::TResidues

Definition at line 99 of file MSModSpec_.hpp.

TResponse

typedef list< CRef< CMSResponse > > CMSSearch_Base::TResponse

Definition at line 92 of file MSSearch_.hpp.

TReversed

typedef bool CMSPepHit_Base::TReversed

Definition at line 94 of file MSPepHit_.hpp.

TReversesearch

typedef bool CMSSearchSettings_Base::TReversesearch

Definition at line 149 of file MSSearchSettings_.hpp.

TRid [1/2]

typedef string CMSRequest_Base::TRid

Definition at line 95 of file MSRequest_.hpp.

TRid [2/2]

typedef string CMSResponse_Base::TRid

Definition at line 95 of file MSResponse_.hpp.

TScale [1/2]

typedef int CMSResponse_Base::TScale

Definition at line 94 of file MSResponse_.hpp.

TScale [2/2]

typedef int CMSSearchSettings_Base::TScale

Definition at line 125 of file MSSearchSettings_.hpp.

TScores

typedef list< CRef< CMSScoreSet > > CMSHits_Base::TScores

Definition at line 107 of file MSHits_.hpp.

TSearchb1

typedef int CMSSearchSettings_Base::TSearchb1

Definition at line 131 of file MSSearchSettings_.hpp.

TSearchctermproduct

typedef int CMSSearchSettings_Base::TSearchctermproduct

Definition at line 132 of file MSSearchSettings_.hpp.

TSeq

typedef CBioseq CMSBioseq_Base::TSeq

Definition at line 87 of file MSBioseq_.hpp.

TSettingid [1/2]

typedef int CMSHitSet_Base::TSettingid

Definition at line 100 of file MSHitSet_.hpp.

TSettingid [2/2]

typedef int CMSSearchSettings_Base::TSettingid

Definition at line 137 of file MSSearchSettings_.hpp.

TSettings

typedef CMSSearchSettings CMSRequest_Base::TSettings

Definition at line 94 of file MSRequest_.hpp.

TSinglenum

typedef int CMSSearchSettings_Base::TSinglenum

Definition at line 114 of file MSSearchSettings_.hpp.

TSinglewin

typedef int CMSSearchSettings_Base::TSinglewin

Definition at line 112 of file MSSearchSettings_.hpp.

TSite

typedef int CMSModHit_Base::TSite

Definition at line 86 of file MSModHit_.hpp.

TSpectra

typedef CMSSpectrumset CMSRequest_Base::TSpectra

Definition at line 93 of file MSRequest_.hpp.

TStart

typedef int CMSPepHit_Base::TStart

Definition at line 87 of file MSPepHit_.hpp.

TStop

typedef int CMSPepHit_Base::TStop

Definition at line 88 of file MSPepHit_.hpp.

TSubsetthresh

typedef double CMSIterativeSettings_Base::TSubsetthresh

Definition at line 83 of file MSIterativeSettings_.hpp.

TSuspect

typedef bool CMSIonAnnot_Base::TSuspect

Definition at line 82 of file MSIonAnnot_.hpp.

TTaxids

typedef list< int > CMSSearchSettings_Base::TTaxids

Definition at line 127 of file MSSearchSettings_.hpp.

TTheomass

typedef int CMSHits_Base::TTheomass

Definition at line 105 of file MSHits_.hpp.

TTophitnum

typedef int CMSSearchSettings_Base::TTophitnum

Definition at line 122 of file MSSearchSettings_.hpp.

TType

typedef int CMSModSpec_Base::TType

Definition at line 94 of file MSModSpec_.hpp.

TUnimod

typedef int CMSModSpec_Base::TUnimod

Definition at line 101 of file MSModSpec_.hpp.

TUseomssascore

typedef bool CMSLibrarySettings_Base::TUseomssascore

Definition at line 89 of file MSLibrarySettings_.hpp.

TUserannotation

typedef int CMSHitSet_Base::TUserannotation

Definition at line 101 of file MSHitSet_.hpp.

TUsereplicatescore

typedef bool CMSLibrarySettings_Base::TUsereplicatescore

Definition at line 90 of file MSLibrarySettings_.hpp.

TUsermods

typedef CMSModSpecSet CMSSearchSettings_Base::TUsermods

Definition at line 129 of file MSSearchSettings_.hpp.

TValue [1/2]

typedef double CMSScoreSet_Base::TValue

Definition at line 87 of file MSScoreSet_.hpp.

TValue [2/2]

typedef string CNameValue_Base::TValue

Definition at line 87 of file NameValue_.hpp.

TVariable

typedef list< int > CMSSearchSettings_Base::TVariable

Definition at line 117 of file MSSearchSettings_.hpp.

TVersion

typedef string CMSResponse_Base::TVersion

Definition at line 97 of file MSResponse_.hpp.

TZdep

typedef int CMSSearchSettings_Base::TZdep

Definition at line 107 of file MSSearchSettings_.hpp.

Enumeration Type Documentation

E_memberIndex [1/23]

enum CMSBioseq_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_oid
e_seq

Definition at line 90 of file MSBioseq_.hpp.

E_memberIndex [2/23]

enum CMSChargeHandle_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_calcplusone
e_calccharge
e_mincharge
e_maxcharge
e_considermult
e_plusone
e_maxproductcharge
e_prodlesspre
e_negative

Definition at line 98 of file MSChargeHandle_.hpp.

E_memberIndex [3/23]

enum CMSHits_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_evalue
e_pvalue
e_charge
e_pephits
e_mzhits
e_pepstring
e_mass
e_mods
e_pepstart
e_pepstop
e_protlength
e_theomass
e_oid
e_scores
e_libaccession

Definition at line 111 of file MSHits_.hpp.

E_memberIndex [4/23]

enum CMSHitSet_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_number
e_error
e_hits
e_ids
e_namevalue
e_settingid
e_userannotation

Definition at line 104 of file MSHitSet_.hpp.

E_memberIndex [5/23]

enum CMSImmonium_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_parent
e_product

Definition at line 90 of file MSImmonium_.hpp.

E_memberIndex [6/23]

enum CMSInFile_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_infile
e_infiletype

Definition at line 90 of file MSInFile_.hpp.

E_memberIndex [7/23]

enum CMSIon_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_neutralloss
e_isotope
e_internal
e_immonium

Definition at line 98 of file MSIon_.hpp.

E_memberIndex [8/23]

enum CMSIonAnnot_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_suspect
e_massdiff
e_missingisotope

Definition at line 87 of file MSIonAnnot_.hpp.

E_memberIndex [9/23]

enum CMSIterativeSettings_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_researchthresh
e_subsetthresh
e_replacethresh

Definition at line 87 of file MSIterativeSettings_.hpp.

E_memberIndex [10/23]

enum CMSLibrarySettings_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_libnames
e_presearch
e_useomssascore
e_usereplicatescore
e_qtofscore

Definition at line 94 of file MSLibrarySettings_.hpp.

E_memberIndex [11/23]

enum CMSMassSet_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_monomass
e_averagemass
e_n15mass

Definition at line 87 of file MSMassSet_.hpp.

E_memberIndex [12/23]

enum CMSModHit_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_site
e_modtype

Definition at line 90 of file MSModHit_.hpp.

E_memberIndex [13/23]

enum CMSModSpec_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_mod
e_type
e_name
e_monomass
e_averagemass
e_n15mass
e_residues
e_neutralloss
e_unimod
e_psi_ms

Definition at line 105 of file MSModSpec_.hpp.

E_memberIndex [14/23]

enum CMSMZHit_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_ion
e_charge
e_number
e_mz
e_index
e_moreion
e_annotation

Definition at line 100 of file MSMZHit_.hpp.

E_memberIndex [15/23]

enum CMSOutFile_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_outfile
e_outfiletype
e_includerequest

Definition at line 91 of file MSOutFile_.hpp.

E_memberIndex [16/23]

enum CMSPepHit_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_start
e_stop
e_gi
e_accession
e_defline
e_protlength
e_oid
e_reversed
e_pepstart
e_pepstop

Definition at line 99 of file MSPepHit_.hpp.

E_memberIndex [17/23]

enum CMSRequest_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_spectra
e_settings
e_rid
e_moresettings
e_modset

Definition at line 100 of file MSRequest_.hpp.

E_memberIndex [18/23]

enum CMSResponse_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_hitsets
e_scale
e_rid
e_error
e_version
e_email
e_dbversion
e_bioseqs

Definition at line 103 of file MSResponse_.hpp.

E_memberIndex [19/23]

enum CMSScoreSet_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_name
e_value

Definition at line 90 of file MSScoreSet_.hpp.

E_memberIndex [20/23]

enum CMSSearch_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_request
e_response

Definition at line 95 of file MSSearch_.hpp.

E_memberIndex [21/23]

enum CMSSearchSettings_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_precursorsearchtype
e_productsearchtype
e_ionstosearch
e_peptol
e_msmstol
e_zdep
e_cutoff
e_cutlo
e_cuthi
e_cutinc
e_singlewin
e_doublewin
e_singlenum
e_doublenum
e_fixed
e_variable
e_enzyme
e_missedcleave
e_hitlistlen
e_db
e_tophitnum
e_minhit
e_minspectra
e_scale
e_maxmods
e_taxids
e_chargehandling
e_usermods
e_pseudocount
e_searchb1
e_searchctermproduct
e_maxproductions
e_minnoenzyme
e_maxnoenzyme
e_exactmass
e_settingid
e_iterativesettings
e_precursorcull
e_infiles
e_outfiles
e_nocorrelationscore
e_probfollowingion
e_nmethionine
e_automassadjust
e_lomasscutoff
e_libsearchsettings
e_noprolineions
e_reversesearch
e_othersettings
e_numisotopes
e_pepppm
e_msmsppm
e_reportedhitcount

Definition at line 157 of file MSSearchSettings_.hpp.

E_memberIndex [22/23]

enum CMSSpectrum_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_number
e_charge
e_precursormz
e_mz
e_abundance
e_iscale
e_ids
e_namevalue

Definition at line 102 of file MSSpectrum_.hpp.

E_memberIndex [23/23]

enum CNameValue_Base::E_memberIndex

strong

Enumerator
e__allMandatory
e_name
e_value

Definition at line 90 of file NameValue_.hpp.

EMSCalcCharge

enum EMSCalcCharge

user instructions on whether to believe charges in input file

Access to EMSCalcCharge's attributes (values, names) as defined in spec.

Enumerator
eMSCalcCharge_calculate	guess the charge(s) from the data
eMSCalcCharge_usefile	use what the input file says
eMSCalcCharge_userange	use the charge range specified

Definition at line 64 of file MSCalcCharge_.hpp.

EMSCalcPlusOne

enum EMSCalcPlusOne

How is charge to be handled? Some input files are not clear on this.

Access to EMSCalcPlusOne's attributes (values, names) as defined in spec.

For example, a dta file only specifies one charge, even though the charge is not really known.

Enumerator
eMSCalcPlusOne_dontcalc	don't guess charge one
eMSCalcPlusOne_calc	guess charge one

Definition at line 66 of file MSCalcPlusOne_.hpp.

EMSEnzymes

enum EMSEnzymes

enumerate enzymes

Access to EMSEnzymes's attributes (values, names) as defined in spec.

Enumerator
eMSEnzymes_trypsin
eMSEnzymes_argc
eMSEnzymes_cnbr
eMSEnzymes_chymotrypsin
eMSEnzymes_formicacid
eMSEnzymes_lysc
eMSEnzymes_lysc_p
eMSEnzymes_pepsin_a
eMSEnzymes_tryp_cnbr
eMSEnzymes_tryp_chymo
eMSEnzymes_trypsin_p
eMSEnzymes_whole_protein
eMSEnzymes_aspn
eMSEnzymes_gluc
eMSEnzymes_aspngluc
eMSEnzymes_top_down
eMSEnzymes_semi_tryptic
eMSEnzymes_no_enzyme
eMSEnzymes_chymotrypsin_p
eMSEnzymes_aspn_de
eMSEnzymes_gluc_de
eMSEnzymes_lysn
eMSEnzymes_thermolysin_p
eMSEnzymes_semi_chymotrypsin
eMSEnzymes_semi_gluc
eMSEnzymes_max
eMSEnzymes_none

Definition at line 64 of file MSEnzymes_.hpp.

EMSHitError

enum EMSHitError

error return for a particular spectrum's hitset

Access to EMSHitError's attributes (values, names) as defined in spec.

Enumerator
eMSHitError_none
eMSHitError_generalerr
eMSHitError_unable2read	can't read the spectrum
eMSHitError_notenuffpeaks	not enough peaks to search

Definition at line 64 of file MSHitError_.hpp.

EMSIonIsotopicType

enum EMSIonIsotopicType

iosotopic type of ion

Access to EMSIonIsotopicType's attributes (values, names) as defined in spec.

Enumerator
eMSIonIsotopicType_monoisotopic	no c13s in molecule
eMSIonIsotopicType_c13	one c13 in molecule
eMSIonIsotopicType_c13two	two c13s in molecule, and so on...
eMSIonIsotopicType_c13three
eMSIonIsotopicType_c13four

Definition at line 64 of file MSIonIsotopicType_.hpp.

EMSIonNeutralLoss

enum EMSIonNeutralLoss

types of neutral loss

Access to EMSIonNeutralLoss's attributes (values, names) as defined in spec.

Enumerator
eMSIonNeutralLoss_water	minus 18 Da
eMSIonNeutralLoss_ammonia	minus 17 Da

Definition at line 64 of file MSIonNeutralLoss_.hpp.

EMSIonType

enum EMSIonType

enumeration of ion types

Access to EMSIonType's attributes (values, names) as defined in spec.

Enumerator
eMSIonType_a
eMSIonType_b
eMSIonType_c
eMSIonType_x
eMSIonType_y
eMSIonType_z	actually zdot
eMSIonType_parent
eMSIonType_internal
eMSIonType_immonium
eMSIonType_unknown
eMSIonType_adot
eMSIonType_x_CO2
eMSIonType_adot_CO2
eMSIonType_max

Definition at line 64 of file MSIonType_.hpp.

EMSMod

enum EMSMod

enumerate modifications

Access to EMSMod's attributes (values, names) as defined in spec.

Enumerator
eMSMod_methylk	methylation of K
eMSMod_oxym	oxidation of methionine
eMSMod_carboxymethylc	carboxymethyl cysteine
eMSMod_carbamidomethylc	carbamidomethyl cysteine
eMSMod_deamidationkq	deamidation of K and Q
eMSMod_propionamidec	propionamide cysteine
eMSMod_phosphorylations	phosphorylation of S
eMSMod_phosphorylationt	phosphorylation of T
eMSMod_phosphorylationy	phosphorylation of Y
eMSMod_ntermmcleave	N terminal methionine cleavage.
eMSMod_ntermacetyl	N terminal protein acetyl.
eMSMod_ntermmethyl	N terminal protein methyl.
eMSMod_ntermtrimethyl	N terminal protein trimethyl.
eMSMod_methythiold	beta methythiolation of D
eMSMod_methylq	methylation of Q
eMSMod_trimethylk	trimethylation of K
eMSMod_methyld	methylation of D
eMSMod_methyle	methylation of E
eMSMod_ctermpepmethyl	C terminal methylation.
eMSMod_trideuteromethyld	trideuteromethylation of D
eMSMod_trideuteromethyle	trideuteromethylation of E
eMSMod_ctermpeptrideuteromethyl	C terminal trideuteromethylation.
eMSMod_nformylmet
eMSMod_twoamino3oxobutanoicacid
eMSMod_acetylk
eMSMod_ctermamide
eMSMod_bmethylthiold
eMSMod_carbamidomethylk
eMSMod_carbamidometylh
eMSMod_carbamidomethyld
eMSMod_carbamidomethyle
eMSMod_carbamylk
eMSMod_ntermcarbamyl
eMSMod_citrullinationr
eMSMod_cysteicacidc
eMSMod_diiodinationy
eMSMod_dimethylk
eMSMod_dimethylr
eMSMod_ntermpepdimethyl
eMSMod_dihydroxyf
eMSMod_thioacetylk
eMSMod_ntermpeptioacetyl
eMSMod_farnesylationc
eMSMod_formylk
eMSMod_ntermpepformyl
eMSMod_formylkynureninw
eMSMod_phef
eMSMod_gammacarboxyld
eMSMod_gammacarboxyle
eMSMod_geranylgeranylc
eMSMod_ntermpepglucuronylg
eMSMod_glutathionec
eMSMod_glyglyk
eMSMod_guanidinationk
eMSMod_his2asnh
eMSMod_his2asph
eMSMod_ctermpephsem
eMSMod_ctermpephselactm
eMSMod_hydroxykynureninw
eMSMod_hydroxylationd
eMSMod_hydroxylationk
eMSMod_hydroxylationn
eMSMod_hydroxylationp
eMSMod_hydroxylationf
eMSMod_hydroxylationy
eMSMod_iodinationy
eMSMod_kynureninw
eMSMod_lipoylk
eMSMod_ctermpepmeester
eMSMod_meesterd
eMSMod_meestere
eMSMod_meesters
eMSMod_meestery
eMSMod_methylc
eMSMod_methylh
eMSMod_methyln
eMSMod_ntermpepmethyl
eMSMod_methylr
eMSMod_ntermpepmyristoyeylationg
eMSMod_ntermpepmyristoyl4hg
eMSMod_ntermpepmyristoylationg
eMSMod_myristoylationk
eMSMod_ntermformyl
eMSMod_nemc
eMSMod_nipcam
eMSMod_nitrow
eMSMod_nitroy
eMSMod_ctermpepo18
eMSMod_ctermpepdio18
eMSMod_oxyh
eMSMod_oxyw
eMSMod_ppantetheines
eMSMod_palmitoylationc
eMSMod_palmitoylationk
eMSMod_palmitoylations
eMSMod_palmitoylationt
eMSMod_phospholosss
eMSMod_phospholosst
eMSMod_phospholossy
eMSMod_phosphoneutrallossc
eMSMod_phosphoneutrallossd
eMSMod_phosphoneutrallossh
eMSMod_propionylk
eMSMod_ntermpeppropionyl
eMSMod_propionylheavyk
eMSMod_ntermpeppropionylheavy
eMSMod_pyridylk
eMSMod_ntermpeppyridyl
eMSMod_ntermpeppyrocmc
eMSMod_ntermpeppyroe
eMSMod_ntermpeppyroq
eMSMod_pyroglutamicp
eMSMod_spyridylethylc
eMSMod_semetm
eMSMod_sulfationy
eMSMod_suphonem
eMSMod_triiodinationy
eMSMod_trimethylationr
eMSMod_ntermpeptripalmitatec
eMSMod_usermod1	start of user defined mods
eMSMod_usermod2
eMSMod_usermod3
eMSMod_usermod4
eMSMod_usermod5
eMSMod_usermod6
eMSMod_usermod7
eMSMod_usermod8
eMSMod_usermod9
eMSMod_usermod10	end of user defined mods
eMSMod_icatlight
eMSMod_icatheavy
eMSMod_camthiopropanoylk
eMSMod_phosphoneutrallosss
eMSMod_phosphoneutrallosst
eMSMod_phosphoetdlosss
eMSMod_phosphoetdlosst
eMSMod_arg_13c6
eMSMod_arg_13c6_15n4
eMSMod_lys_13c6
eMSMod_oxy18
eMSMod_beta_elim_s
eMSMod_beta_elim_t
eMSMod_usermod11
eMSMod_usermod12
eMSMod_usermod13
eMSMod_usermod14
eMSMod_usermod15
eMSMod_usermod16
eMSMod_usermod17
eMSMod_usermod18
eMSMod_usermod19
eMSMod_usermod20
eMSMod_usermod21
eMSMod_usermod22
eMSMod_usermod23
eMSMod_usermod24
eMSMod_usermod25
eMSMod_usermod26
eMSMod_usermod27
eMSMod_usermod28
eMSMod_usermod29
eMSMod_usermod30
eMSMod_sulfinicacid
eMSMod_arg2orn
eMSMod_dehydro
eMSMod_carboxykynurenin
eMSMod_sumoylation
eMSMod_iTRAQ114nterm
eMSMod_iTRAQ114K
eMSMod_iTRAQ114Y
eMSMod_iTRAQ115nterm
eMSMod_iTRAQ115K
eMSMod_iTRAQ115Y
eMSMod_iTRAQ116nterm
eMSMod_iTRAQ116K
eMSMod_iTRAQ116Y
eMSMod_iTRAQ117nterm
eMSMod_iTRAQ117K
eMSMod_iTRAQ117Y
eMSMod_mmts
eMSMod_lys_2H4
eMSMod_lys_13C615N2
eMSMod_hexNAcN
eMSMod_dHexHexNAcN
eMSMod_hexNAcS
eMSMod_hexNAcT
eMSMod_mod186
eMSMod_mod187
eMSMod_mod188
eMSMod_mod189
eMSMod_mod190
eMSMod_mod191
eMSMod_mod192
eMSMod_mod193
eMSMod_mod194
eMSMod_mod195
eMSMod_mod196
eMSMod_mod197
eMSMod_mod198
eMSMod_mod199
eMSMod_mod200
eMSMod_mod201
eMSMod_mod202
eMSMod_mod203
eMSMod_mod204
eMSMod_mod205
eMSMod_mod206
eMSMod_mod207
eMSMod_mod208
eMSMod_mod209
eMSMod_mod210
eMSMod_mod211
eMSMod_mod212
eMSMod_mod213
eMSMod_mod214
eMSMod_mod215
eMSMod_mod216
eMSMod_mod217
eMSMod_mod218
eMSMod_mod219
eMSMod_mod220
eMSMod_mod221
eMSMod_mod222
eMSMod_mod223
eMSMod_mod224
eMSMod_mod225
eMSMod_mod226
eMSMod_mod227
eMSMod_mod228
eMSMod_mod229
eMSMod_mod230
eMSMod_max	maximum number of mods
eMSMod_unknown	modification of unknown type
eMSMod_none

Definition at line 64 of file MSMod_.hpp.

EMSModType

enum EMSModType

enumerate modification types

Access to EMSModType's attributes (values, names) as defined in spec.

Enumerator
eMSModType_modaa	at particular amino acids
eMSModType_modn	at the N terminus of a protein
eMSModType_modnaa	at the N terminus of a protein at particular amino acids
eMSModType_modc	at the C terminus of a protein
eMSModType_modcaa	at the C terminus of a protein at particular amino acids
eMSModType_modnp	at the N terminus of a peptide
eMSModType_modnpaa	at the N terminus of a peptide at particular amino acids
eMSModType_modcp	at the C terminus of a peptide
eMSModType_modcpaa	at the C terminus of a peptide at particular amino acids
eMSModType_modmax	the max number of modification types

Definition at line 64 of file MSModType_.hpp.

EMSResponseError

enum EMSResponseError

error return for the entire response

Access to EMSResponseError's attributes (values, names) as defined in spec.

Enumerator
eMSResponseError_none
eMSResponseError_generalerr
eMSResponseError_noblastdb	unable to open blast library
eMSResponseError_noinput	input missing

Definition at line 64 of file MSResponseError_.hpp.

EMSSearchType

enum EMSSearchType

what type of atomic mass to use

Access to EMSSearchType's attributes (values, names) as defined in spec.

Enumerator
eMSSearchType_monoisotopic
eMSSearchType_average
eMSSearchType_monon15
eMSSearchType_exact
eMSSearchType_multiisotope
eMSSearchType_max

Definition at line 64 of file MSSearchType_.hpp.

EMSSerialDataFormat

enum EMSSerialDataFormat

Access to EMSSerialDataFormat's attributes (values, names) as defined in spec.

Enumerator
eMSSerialDataFormat_none
eMSSerialDataFormat_asntext	open ASN.1 text format
eMSSerialDataFormat_asnbinary	open ASN.1 binary format
eMSSerialDataFormat_xml	open XML format
eMSSerialDataFormat_csv	csv (excel)
eMSSerialDataFormat_pepxml	pepXML format
eMSSerialDataFormat_xmlbz2	bzip2 XML format

Definition at line 63 of file MSSerialDataFormat_.hpp.

EMSSpectrumFileType

enum EMSSpectrumFileType

Access to EMSSpectrumFileType's attributes (values, names) as defined in spec.

Enumerator
eMSSpectrumFileType_dta
eMSSpectrumFileType_dtablank
eMSSpectrumFileType_dtaxml
eMSSpectrumFileType_asc
eMSSpectrumFileType_pkl
eMSSpectrumFileType_pks
eMSSpectrumFileType_sciex
eMSSpectrumFileType_mgf
eMSSpectrumFileType_unknown
eMSSpectrumFileType_oms	asn.1 binary for iterative search
eMSSpectrumFileType_omx	xml for iterative search
eMSSpectrumFileType_xml	xml MSRequest
eMSSpectrumFileType_omxbz2	bzip2 omx file

Definition at line 63 of file MSSpectrumFileType_.hpp.

EMSUserAnnot

enum EMSUserAnnot

MSHitSet annotation by end user.

Access to EMSUserAnnot's attributes (values, names) as defined in spec.

Enumerator
eMSUserAnnot_none
eMSUserAnnot_delete
eMSUserAnnot_flag

Definition at line 64 of file MSUserAnnot_.hpp.

EMSZdependence

enum EMSZdependence

what is the charge dependence of the mass tolerance?

Access to EMSZdependence's attributes (values, names) as defined in spec.

Enumerator
eMSZdependence_independent	mass tol. invariant with charge
eMSZdependence_linearwithz	mass tol. scales with charge
eMSZdependence_max

Definition at line 64 of file MSZdependence_.hpp.

Function Documentation

CanGet() [1/4]

bool CMSBioseqSet_Base::CanGet ( void  ) const

inline

Check if it is safe to call Get method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 158 of file MSBioseqSet_.hpp.

CanGet() [2/4]

bool CMSModSpecSet_Base::CanGet ( void  ) const

inline

Check if it is safe to call Get method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 159 of file MSModSpecSet_.hpp.

Referenced by CMSModSpecSet::Append().

CanGet() [3/4]

bool CMSSearchSettingsSet_Base::CanGet ( void  ) const

inline

Check if it is safe to call Get method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 158 of file MSSearchSettingsSet_.hpp.

CanGet() [4/4]

bool CMSSpectrumset_Base::CanGet ( void  ) const

inline

Check if it is safe to call Get method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 159 of file MSSpectrumset_.hpp.

CanGetAbundance()

bool CMSSpectrum_Base::CanGetAbundance ( void  ) const

inline

Check if it is safe to call GetAbundance method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 573 of file MSSpectrum_.hpp.

CanGetAccession()

bool CMSPepHit_Base::CanGetAccession ( void  ) const

inline

Check if it is safe to call GetAccession method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 681 of file MSPepHit_.hpp.

References CMSPepHit_Base::IsSetAccession().

Referenced by CMSPepHit_Base::GetAccession().

CanGetAnnotation()

bool CMSMZHit_Base::CanGetAnnotation ( void  ) const

inline

Check if it is safe to call GetAnnotation method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 673 of file MSMZHit_.hpp.

References CMSMZHit_Base::IsSetAnnotation().

Referenced by CMSMZHit_Base::GetAnnotation().

CanGetAutomassadjust()

bool CMSSearchSettings_Base::CanGetAutomassadjust ( void  ) const

inline

Check if it is safe to call GetAutomassadjust method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 4148 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetAutomassadjust().

Referenced by CMSSearchSettings_Base::GetAutomassadjust(), and CMSSearchSettings::Validate().

CanGetAveragemass() [1/2]

bool CMSMassSet_Base::CanGetAveragemass ( void  ) const

inline

Check if it is safe to call GetAveragemass method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 288 of file MSMassSet_.hpp.

References CMSMassSet_Base::IsSetAveragemass().

Referenced by CMSMassSet_Base::GetAveragemass().

CanGetAveragemass() [2/2]

bool CMSModSpec_Base::CanGetAveragemass ( void  ) const

inline

Check if it is safe to call GetAveragemass method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 726 of file MSModSpec_.hpp.

References CMSModSpec_Base::IsSetAveragemass().

Referenced by CMSModSpec_Base::GetAveragemass().

CanGetBioseqs()

bool CMSResponse_Base::CanGetBioseqs ( void  ) const

inline

Check if it is safe to call GetBioseqs method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 770 of file MSResponse_.hpp.

References CMSResponse_Base::IsSetBioseqs().

Referenced by CMSResponse_Base::GetBioseqs().

CanGetCalccharge()

bool CMSChargeHandle_Base::CanGetCalccharge ( void  ) const

inline

Check if it is safe to call GetCalccharge method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 563 of file MSChargeHandle_.hpp.

Referenced by CMSSearchSettings::Validate().

CanGetCalcplusone()

bool CMSChargeHandle_Base::CanGetCalcplusone ( void  ) const

inline

Check if it is safe to call GetCalcplusone method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 513 of file MSChargeHandle_.hpp.

Referenced by CMSSearchSettings::Validate().

CanGetCharge() [1/3]

bool CMSHits_Base::CanGetCharge ( void  ) const

inline

Check if it is safe to call GetCharge method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 822 of file MSHits_.hpp.

References CMSHits_Base::IsSetCharge().

Referenced by CMSHits_Base::GetCharge().

CanGetCharge() [2/3]

bool CMSMZHit_Base::CanGetCharge ( void  ) const

inline

Check if it is safe to call GetCharge method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 464 of file MSMZHit_.hpp.

References CMSMZHit_Base::IsSetCharge().

Referenced by CMSMZHit_Base::GetCharge().

CanGetCharge() [3/3]

bool CMSSpectrum_Base::CanGetCharge ( void  ) const

inline

Check if it is safe to call GetCharge method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 476 of file MSSpectrum_.hpp.

CanGetChargehandling()

bool CMSSearchSettings_Base::CanGetChargehandling ( void  ) const

inline

Check if it is safe to call GetChargehandling method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3453 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetChargehandling().

Referenced by CMSSearchSettings_Base::GetChargehandling().

CanGetConsidermult()

bool CMSChargeHandle_Base::CanGetConsidermult ( void  ) const

inline

Check if it is safe to call GetConsidermult method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 713 of file MSChargeHandle_.hpp.

Referenced by CMSSearchSettings::Validate().

CanGetCuthi()

bool CMSSearchSettings_Base::CanGetCuthi ( void  ) const

inline

Check if it is safe to call GetCuthi method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2658 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetCuthi().

Referenced by CMSSearchSettings_Base::GetCuthi(), and CMSSearchSettings::Validate().

CanGetCutinc()

bool CMSSearchSettings_Base::CanGetCutinc ( void  ) const

inline

Check if it is safe to call GetCutinc method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2705 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetCutinc().

Referenced by CMSSearchSettings_Base::GetCutinc(), and CMSSearchSettings::Validate().

CanGetCutlo()

bool CMSSearchSettings_Base::CanGetCutlo ( void  ) const

inline

Check if it is safe to call GetCutlo method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2611 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetCutlo().

Referenced by CMSSearchSettings_Base::GetCutlo(), and CMSSearchSettings::Validate().

CanGetCutoff()

bool CMSSearchSettings_Base::CanGetCutoff ( void  ) const

inline

Check if it is safe to call GetCutoff method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2564 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetCutoff().

Referenced by CMSSearchSettings_Base::GetCutoff().

CanGetDb()

bool CMSSearchSettings_Base::CanGetDb ( void  ) const

inline

Check if it is safe to call GetDb method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3134 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetDb().

Referenced by CMSSearchSettings_Base::GetDb(), and CMSSearchSettings::Validate().

CanGetDbversion()

bool CMSResponse_Base::CanGetDbversion ( void  ) const

inline

Check if it is safe to call GetDbversion method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 723 of file MSResponse_.hpp.

References CMSResponse_Base::IsSetDbversion().

Referenced by CMSResponse_Base::GetDbversion().

CanGetDefline()

bool CMSPepHit_Base::CanGetDefline ( void  ) const

inline

Check if it is safe to call GetDefline method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 728 of file MSPepHit_.hpp.

References CMSPepHit_Base::IsSetDefline().

Referenced by CMSPepHit_Base::GetDefline().

CanGetDoublenum()

bool CMSSearchSettings_Base::CanGetDoublenum ( void  ) const

inline

Check if it is safe to call GetDoublenum method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2893 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetDoublenum().

Referenced by CMSSearchSettings_Base::GetDoublenum(), and CMSSearchSettings::Validate().

CanGetDoublewin()

bool CMSSearchSettings_Base::CanGetDoublewin ( void  ) const

inline

Check if it is safe to call GetDoublewin method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2799 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetDoublewin().

Referenced by CMSSearchSettings_Base::GetDoublewin(), and CMSSearchSettings::Validate().

CanGetEmail()

bool CMSResponse_Base::CanGetEmail ( void  ) const

inline

Check if it is safe to call GetEmail method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 676 of file MSResponse_.hpp.

References CMSResponse_Base::IsSetEmail().

Referenced by CMSResponse_Base::GetEmail().

CanGetEnzyme()

bool CMSSearchSettings_Base::CanGetEnzyme ( void  ) const

inline

Check if it is safe to call GetEnzyme method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2990 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetEnzyme().

Referenced by CMSSearchSettings_Base::GetEnzyme(), and CMSSearchSettings::Validate().

CanGetError() [1/2]

bool CMSHitSet_Base::CanGetError ( void  ) const

inline

Check if it is safe to call GetError method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 450 of file MSHitSet_.hpp.

References CMSHitSet_Base::IsSetError().

Referenced by CMSHitSet_Base::GetError().

CanGetError() [2/2]

bool CMSResponse_Base::CanGetError ( void  ) const

inline

Check if it is safe to call GetError method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 582 of file MSResponse_.hpp.

References CMSResponse_Base::IsSetError().

Referenced by CMSResponse_Base::GetError(), and CMSResponse::PrintCSV().

CanGetEvalue()

bool CMSHits_Base::CanGetEvalue ( void  ) const

inline

Check if it is safe to call GetEvalue method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 728 of file MSHits_.hpp.

References CMSHits_Base::IsSetEvalue().

Referenced by CMSHits_Base::GetEvalue().

CanGetExactmass()

bool CMSSearchSettings_Base::CanGetExactmass ( void  ) const

inline

Check if it is safe to call GetExactmass method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3795 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetExactmass().

Referenced by CMSSearchSettings_Base::GetExactmass(), and CMSSearchSettings::Validate().

CanGetFixed()

bool CMSSearchSettings_Base::CanGetFixed ( void  ) const

inline

Check if it is safe to call GetFixed method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2940 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings::Validate().

CanGetGi()

bool CMSPepHit_Base::CanGetGi ( void  ) const

inline

Check if it is safe to call GetGi method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 634 of file MSPepHit_.hpp.

References CMSPepHit_Base::IsSetGi().

Referenced by CMSPepHit_Base::GetGi().

CanGetHitlistlen()

bool CMSSearchSettings_Base::CanGetHitlistlen ( void  ) const

inline

Check if it is safe to call GetHitlistlen method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3084 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings::Validate().

CanGetHits()

bool CMSHitSet_Base::CanGetHits ( void  ) const

inline

Check if it is safe to call GetHits method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 497 of file MSHitSet_.hpp.

CanGetHitsets()

bool CMSResponse_Base::CanGetHitsets ( void  ) const

inline

Check if it is safe to call GetHitsets method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 460 of file MSResponse_.hpp.

Referenced by CMSResponse::PrintCSV().

CanGetIds() [1/2]

bool CMSHitSet_Base::CanGetIds ( void  ) const

inline

Check if it is safe to call GetIds method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 522 of file MSHitSet_.hpp.

CanGetIds() [2/2]

bool CMSSpectrum_Base::CanGetIds ( void  ) const

inline

Check if it is safe to call GetIds method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 645 of file MSSpectrum_.hpp.

Referenced by CMSPeak::ReadAndProcess().

CanGetImmonium()

bool CMSIon_Base::CanGetImmonium ( void  ) const

inline

Check if it is safe to call GetImmonium method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 437 of file MSIon_.hpp.

References CMSIon_Base::IsSetImmonium().

Referenced by CMSIon_Base::GetImmonium().

CanGetIncluderequest()

bool CMSOutFile_Base::CanGetIncluderequest ( void  ) const

inline

Check if it is safe to call GetIncluderequest method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 343 of file MSOutFile_.hpp.

References CMSOutFile_Base::IsSetIncluderequest().

Referenced by CMSOutFile_Base::GetIncluderequest().

CanGetIndex()

bool CMSMZHit_Base::CanGetIndex ( void  ) const

inline

Check if it is safe to call GetIndex method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 605 of file MSMZHit_.hpp.

References CMSMZHit_Base::IsSetIndex().

Referenced by CMSMZHit_Base::GetIndex().

CanGetInfile()

bool CMSInFile_Base::CanGetInfile ( void  ) const

inline

Check if it is safe to call GetInfile method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 208 of file MSInFile_.hpp.

References CMSInFile_Base::IsSetInfile().

Referenced by CMSInFile_Base::GetInfile().

CanGetInfiles()

bool CMSSearchSettings_Base::CanGetInfiles ( void  ) const

inline

Check if it is safe to call GetInfiles method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3957 of file MSSearchSettings_.hpp.

CanGetInfiletype()

bool CMSInFile_Base::CanGetInfiletype ( void  ) const

inline

Check if it is safe to call GetInfiletype method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 255 of file MSInFile_.hpp.

References CMSInFile_Base::IsSetInfiletype().

Referenced by CMSInFile_Base::GetInfiletype().

CanGetInternal()

bool CMSIon_Base::CanGetInternal ( void  ) const

inline

Check if it is safe to call GetInternal method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 390 of file MSIon_.hpp.

References CMSIon_Base::IsSetInternal().

Referenced by CMSIon_Base::GetInternal().

CanGetIon()

bool CMSMZHit_Base::CanGetIon ( void  ) const

inline

Check if it is safe to call GetIon method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 417 of file MSMZHit_.hpp.

References CMSMZHit_Base::IsSetIon().

Referenced by CMSMZHit_Base::GetIon().

CanGetIonstosearch()

bool CMSSearchSettings_Base::CanGetIonstosearch ( void  ) const

inline

Check if it is safe to call GetIonstosearch method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2398 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings::Validate().

CanGetIscale()

bool CMSSpectrum_Base::CanGetIscale ( void  ) const

inline

Check if it is safe to call GetIscale method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 598 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::IsSetIscale().

Referenced by CMSSpectrum_Base::GetIscale().

CanGetIsotope()

bool CMSIon_Base::CanGetIsotope ( void  ) const

inline

Check if it is safe to call GetIsotope method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 343 of file MSIon_.hpp.

References CMSIon_Base::IsSetIsotope().

Referenced by CMSIon_Base::GetIsotope().

CanGetIterativesettings()

bool CMSSearchSettings_Base::CanGetIterativesettings ( void  ) const

inline

Check if it is safe to call GetIterativesettings method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3889 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetIterativesettings().

Referenced by CMSSearchSettings_Base::GetIterativesettings().

CanGetLibaccession()

bool CMSHits_Base::CanGetLibaccession ( void  ) const

inline

Check if it is safe to call GetLibaccession method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1298 of file MSHits_.hpp.

References CMSHits_Base::IsSetLibaccession().

Referenced by CMSHits_Base::GetLibaccession().

CanGetLibnames()

bool CMSLibrarySettings_Base::CanGetLibnames ( void  ) const

inline

Check if it is safe to call GetLibnames method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 325 of file MSLibrarySettings_.hpp.

CanGetLibsearchsettings()

bool CMSSearchSettings_Base::CanGetLibsearchsettings ( void  ) const

inline

Check if it is safe to call GetLibsearchsettings method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 4242 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetLibsearchsettings().

Referenced by CMSSearchSettings_Base::GetLibsearchsettings().

CanGetLomasscutoff()

bool CMSSearchSettings_Base::CanGetLomasscutoff ( void  ) const

inline

Check if it is safe to call GetLomasscutoff method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 4195 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetLomasscutoff().

Referenced by CMSSearchSettings_Base::GetLomasscutoff().

CanGetMass()

bool CMSHits_Base::CanGetMass ( void  ) const

inline

Check if it is safe to call GetMass method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 966 of file MSHits_.hpp.

References CMSHits_Base::IsSetMass().

Referenced by CMSHits_Base::GetMass().

CanGetMassdiff()

bool CMSIonAnnot_Base::CanGetMassdiff ( void  ) const

inline

Check if it is safe to call GetMassdiff method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 291 of file MSIonAnnot_.hpp.

References CMSIonAnnot_Base::IsSetMassdiff().

Referenced by CMSIonAnnot_Base::GetMassdiff().

CanGetMaxcharge()

bool CMSChargeHandle_Base::CanGetMaxcharge ( void  ) const

inline

Check if it is safe to call GetMaxcharge method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 663 of file MSChargeHandle_.hpp.

Referenced by CMSSearchSettings::Validate().

CanGetMaxmods()

bool CMSSearchSettings_Base::CanGetMaxmods ( void  ) const

inline

Check if it is safe to call GetMaxmods method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3378 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings::Validate().

CanGetMaxnoenzyme()

bool CMSSearchSettings_Base::CanGetMaxnoenzyme ( void  ) const

inline

Check if it is safe to call GetMaxnoenzyme method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3745 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings::Validate().

CanGetMaxproductcharge()

bool CMSChargeHandle_Base::CanGetMaxproductcharge ( void  ) const

inline

Check if it is safe to call GetMaxproductcharge method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 810 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::IsSetMaxproductcharge().

Referenced by CMSChargeHandle_Base::GetMaxproductcharge(), and CMSSearchSettings::Validate().

CanGetMaxproductions()

bool CMSSearchSettings_Base::CanGetMaxproductions ( void  ) const

inline

Check if it is safe to call GetMaxproductions method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3645 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings::Validate().

CanGetMincharge()

bool CMSChargeHandle_Base::CanGetMincharge ( void  ) const

inline

Check if it is safe to call GetMincharge method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 613 of file MSChargeHandle_.hpp.

Referenced by CMSSearchSettings::Validate().

CanGetMinhit()

bool CMSSearchSettings_Base::CanGetMinhit ( void  ) const

inline

Check if it is safe to call GetMinhit method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3228 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings::Validate().

CanGetMinnoenzyme()

bool CMSSearchSettings_Base::CanGetMinnoenzyme ( void  ) const

inline

Check if it is safe to call GetMinnoenzyme method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3695 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings::Validate().

CanGetMinspectra()

bool CMSSearchSettings_Base::CanGetMinspectra ( void  ) const

inline

Check if it is safe to call GetMinspectra method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3278 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings::Validate().

CanGetMissedcleave()

bool CMSSearchSettings_Base::CanGetMissedcleave ( void  ) const

inline

Check if it is safe to call GetMissedcleave method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3037 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetMissedcleave().

Referenced by CMSSearchSettings_Base::GetMissedcleave(), and CMSSearchSettings::Validate().

CanGetMissingisotope()

bool CMSIonAnnot_Base::CanGetMissingisotope ( void  ) const

inline

Check if it is safe to call GetMissingisotope method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 338 of file MSIonAnnot_.hpp.

References CMSIonAnnot_Base::IsSetMissingisotope().

Referenced by CMSIonAnnot_Base::GetMissingisotope().

CanGetMod()

bool CMSModSpec_Base::CanGetMod ( void  ) const

inline

Check if it is safe to call GetMod method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 538 of file MSModSpec_.hpp.

References CMSModSpec_Base::IsSetMod().

Referenced by CMSModSpec_Base::GetMod().

CanGetMods()

bool CMSHits_Base::CanGetMods ( void  ) const

inline

Check if it is safe to call GetMods method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1013 of file MSHits_.hpp.

Referenced by CMSHits::MakeModString().

CanGetModset()

bool CMSRequest_Base::CanGetModset ( void  ) const

inline

Check if it is safe to call GetModset method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 466 of file MSRequest_.hpp.

References CMSRequest_Base::IsSetModset().

Referenced by CMSRequest_Base::GetModset().

CanGetModtype()

bool CMSModHit_Base::CanGetModtype ( void  ) const

inline

Check if it is safe to call GetModtype method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 254 of file MSModHit_.hpp.

References CMSModHit_Base::IsSetModtype().

Referenced by CMSModHit_Base::GetModtype().

CanGetMonomass() [1/2]

bool CMSMassSet_Base::CanGetMonomass ( void  ) const

inline

Check if it is safe to call GetMonomass method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 241 of file MSMassSet_.hpp.

References CMSMassSet_Base::IsSetMonomass().

Referenced by CMSMassSet_Base::GetMonomass().

CanGetMonomass() [2/2]

bool CMSModSpec_Base::CanGetMonomass ( void  ) const

inline

Check if it is safe to call GetMonomass method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 679 of file MSModSpec_.hpp.

References CMSModSpec_Base::IsSetMonomass().

Referenced by CMSModSpec_Base::GetMonomass().

CanGetMoreion()

bool CMSMZHit_Base::CanGetMoreion ( void  ) const

inline

Check if it is safe to call GetMoreion method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 652 of file MSMZHit_.hpp.

References CMSMZHit_Base::IsSetMoreion().

Referenced by CMSMZHit_Base::GetMoreion().

CanGetMoresettings()

bool CMSRequest_Base::CanGetMoresettings ( void  ) const

inline

Check if it is safe to call GetMoresettings method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 445 of file MSRequest_.hpp.

References CMSRequest_Base::IsSetMoresettings().

Referenced by CMSRequest_Base::GetMoresettings(), and CMSRequest::GetSettingsById().

CanGetMsmsppm()

bool CMSSearchSettings_Base::CanGetMsmsppm ( void  ) const

inline

Check if it is safe to call GetMsmsppm method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 4454 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetMsmsppm().

Referenced by CMSSearchSettings_Base::GetMsmsppm().

CanGetMsmstol()

bool CMSSearchSettings_Base::CanGetMsmstol ( void  ) const

inline

Check if it is safe to call GetMsmstol method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2470 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetMsmstol().

Referenced by CMSSearchSettings_Base::GetMsmstol(), and CMSSearchSettings::Validate().

CanGetMz() [1/2]

bool CMSMZHit_Base::CanGetMz ( void  ) const

inline

Check if it is safe to call GetMz method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 558 of file MSMZHit_.hpp.

References CMSMZHit_Base::IsSetMz().

Referenced by CMSMZHit_Base::GetMz().

CanGetMz() [2/2]

bool CMSSpectrum_Base::CanGetMz ( void  ) const

inline

Check if it is safe to call GetMz method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 548 of file MSSpectrum_.hpp.

CanGetMzhits()

bool CMSHits_Base::CanGetMzhits ( void  ) const

inline

Check if it is safe to call GetMzhits method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 894 of file MSHits_.hpp.

CanGetN15mass() [1/2]

bool CMSMassSet_Base::CanGetN15mass ( void  ) const

inline

Check if it is safe to call GetN15mass method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 335 of file MSMassSet_.hpp.

References CMSMassSet_Base::IsSetN15mass().

Referenced by CMSMassSet_Base::GetN15mass().

CanGetN15mass() [2/2]

bool CMSModSpec_Base::CanGetN15mass ( void  ) const

inline

Check if it is safe to call GetN15mass method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 773 of file MSModSpec_.hpp.

References CMSModSpec_Base::IsSetN15mass().

Referenced by CMSModSpec_Base::GetN15mass().

CanGetName() [1/3]

bool CMSModSpec_Base::CanGetName ( void  ) const

inline

Check if it is safe to call GetName method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 632 of file MSModSpec_.hpp.

References CMSModSpec_Base::IsSetName().

Referenced by CMSModSpec_Base::GetName().

CanGetName() [2/3]

bool CMSScoreSet_Base::CanGetName ( void  ) const

inline

Check if it is safe to call GetName method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 206 of file MSScoreSet_.hpp.

References CMSScoreSet_Base::IsSetName().

Referenced by CMSScoreSet_Base::GetName().

CanGetName() [3/3]

bool CNameValue_Base::CanGetName ( void  ) const

inline

Check if it is safe to call GetName method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 207 of file NameValue_.hpp.

References CNameValue_Base::IsSetName().

Referenced by CNameValue_Base::GetName().

CanGetNamevalue() [1/2]

bool CMSHitSet_Base::CanGetNamevalue ( void  ) const

inline

Check if it is safe to call GetNamevalue method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 547 of file MSHitSet_.hpp.

CanGetNamevalue() [2/2]

bool CMSSpectrum_Base::CanGetNamevalue ( void  ) const

inline

Check if it is safe to call GetNamevalue method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 670 of file MSSpectrum_.hpp.

CanGetNegative()

bool CMSChargeHandle_Base::CanGetNegative ( void  ) const

inline

Check if it is safe to call GetNegative method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 904 of file MSChargeHandle_.hpp.

CanGetNeutralloss() [1/2]

bool CMSIon_Base::CanGetNeutralloss ( void  ) const

inline

Check if it is safe to call GetNeutralloss method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 296 of file MSIon_.hpp.

References CMSIon_Base::IsSetNeutralloss().

Referenced by CMSIon_Base::GetNeutralloss().

CanGetNeutralloss() [2/2]

bool CMSModSpec_Base::CanGetNeutralloss ( void  ) const

inline

Check if it is safe to call GetNeutralloss method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 845 of file MSModSpec_.hpp.

References CMSModSpec_Base::IsSetNeutralloss().

Referenced by CMSModSpec_Base::GetNeutralloss().

CanGetNmethionine()

bool CMSSearchSettings_Base::CanGetNmethionine ( void  ) const

inline

Check if it is safe to call GetNmethionine method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 4101 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetNmethionine().

Referenced by CMSSearchSettings_Base::GetNmethionine().

CanGetNocorrelationscore()

bool CMSSearchSettings_Base::CanGetNocorrelationscore ( void  ) const

inline

Check if it is safe to call GetNocorrelationscore method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 4007 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetNocorrelationscore().

Referenced by CMSSearchSettings_Base::GetNocorrelationscore(), and CMSSearchSettings::Validate().

CanGetNoprolineions()

bool CMSSearchSettings_Base::CanGetNoprolineions ( void  ) const

inline

Check if it is safe to call GetNoprolineions method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 4263 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings::Validate().

CanGetNumber() [1/3]

bool CMSHitSet_Base::CanGetNumber ( void  ) const

inline

Check if it is safe to call GetNumber method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 403 of file MSHitSet_.hpp.

References CMSHitSet_Base::IsSetNumber().

Referenced by CMSHitSet_Base::GetNumber().

CanGetNumber() [2/3]

bool CMSMZHit_Base::CanGetNumber ( void  ) const

inline

Check if it is safe to call GetNumber method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 511 of file MSMZHit_.hpp.

References CMSMZHit_Base::IsSetNumber().

Referenced by CMSMZHit_Base::GetNumber().

CanGetNumber() [3/3]

bool CMSSpectrum_Base::CanGetNumber ( void  ) const

inline

Check if it is safe to call GetNumber method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 429 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::IsSetNumber().

Referenced by CMSSpectrum_Base::GetNumber(), and CMSPeak::ReadAndProcess().

CanGetNumisotopes()

bool CMSSearchSettings_Base::CanGetNumisotopes ( void  ) const

inline

Check if it is safe to call GetNumisotopes method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 4360 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetNumisotopes().

Referenced by CMSSearchSettings_Base::GetNumisotopes(), and CMSSearchSettings::Validate().

CanGetOid() [1/3]

bool CMSBioseq_Base::CanGetOid ( void  ) const

inline

Check if it is safe to call GetOid method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 206 of file MSBioseq_.hpp.

References CMSBioseq_Base::IsSetOid().

Referenced by CMSBioseq_Base::GetOid().

CanGetOid() [2/3]

bool CMSHits_Base::CanGetOid ( void  ) const

inline

Check if it is safe to call GetOid method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1226 of file MSHits_.hpp.

References CMSHits_Base::IsSetOid().

Referenced by CMSHits_Base::GetOid().

CanGetOid() [3/3]

bool CMSPepHit_Base::CanGetOid ( void  ) const

inline

Check if it is safe to call GetOid method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 822 of file MSPepHit_.hpp.

References CMSPepHit_Base::IsSetOid().

Referenced by CMSPepHit_Base::GetOid().

CanGetOthersettings()

bool CMSSearchSettings_Base::CanGetOthersettings ( void  ) const

inline

Check if it is safe to call GetOthersettings method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 4335 of file MSSearchSettings_.hpp.

CanGetOutfile()

bool CMSOutFile_Base::CanGetOutfile ( void  ) const

inline

Check if it is safe to call GetOutfile method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 249 of file MSOutFile_.hpp.

References CMSOutFile_Base::IsSetOutfile().

Referenced by CMSOutFile_Base::GetOutfile().

CanGetOutfiles()

bool CMSSearchSettings_Base::CanGetOutfiles ( void  ) const

inline

Check if it is safe to call GetOutfiles method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3982 of file MSSearchSettings_.hpp.

CanGetOutfiletype()

bool CMSOutFile_Base::CanGetOutfiletype ( void  ) const

inline

Check if it is safe to call GetOutfiletype method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 296 of file MSOutFile_.hpp.

References CMSOutFile_Base::IsSetOutfiletype().

Referenced by CMSOutFile_Base::GetOutfiletype().

CanGetParent()

bool CMSImmonium_Base::CanGetParent ( void  ) const

inline

Check if it is safe to call GetParent method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 209 of file MSImmonium_.hpp.

References CMSImmonium_Base::IsSetParent().

Referenced by CMSImmonium_Base::GetParent().

CanGetPephits()

bool CMSHits_Base::CanGetPephits ( void  ) const

inline

Check if it is safe to call GetPephits method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 869 of file MSHits_.hpp.

CanGetPepppm()

bool CMSSearchSettings_Base::CanGetPepppm ( void  ) const

inline

Check if it is safe to call GetPepppm method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 4407 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetPepppm().

Referenced by CMSSearchSettings_Base::GetPepppm().

CanGetPepstart() [1/2]

bool CMSHits_Base::CanGetPepstart ( void  ) const

inline

Check if it is safe to call GetPepstart method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1038 of file MSHits_.hpp.

References CMSHits_Base::IsSetPepstart().

Referenced by CMSHits_Base::GetPepstart().

CanGetPepstart() [2/2]

bool CMSPepHit_Base::CanGetPepstart ( void  ) const

inline

Check if it is safe to call GetPepstart method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 916 of file MSPepHit_.hpp.

References CMSPepHit_Base::IsSetPepstart().

Referenced by CMSPepHit_Base::GetPepstart().

CanGetPepstop() [1/2]

bool CMSHits_Base::CanGetPepstop ( void  ) const

inline

Check if it is safe to call GetPepstop method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1085 of file MSHits_.hpp.

References CMSHits_Base::IsSetPepstop().

Referenced by CMSHits_Base::GetPepstop().

CanGetPepstop() [2/2]

bool CMSPepHit_Base::CanGetPepstop ( void  ) const

inline

Check if it is safe to call GetPepstop method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 963 of file MSPepHit_.hpp.

References CMSPepHit_Base::IsSetPepstop().

Referenced by CMSPepHit_Base::GetPepstop().

CanGetPepstring()

bool CMSHits_Base::CanGetPepstring ( void  ) const

inline

Check if it is safe to call GetPepstring method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 919 of file MSHits_.hpp.

References CMSHits_Base::IsSetPepstring().

Referenced by CMSHits_Base::GetPepstring(), and CMSHits::MakePepString().

CanGetPeptol()

bool CMSSearchSettings_Base::CanGetPeptol ( void  ) const

inline

Check if it is safe to call GetPeptol method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2423 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetPeptol().

Referenced by CMSSearchSettings_Base::GetPeptol(), and CMSSearchSettings::Validate().

CanGetPlusone()

bool CMSChargeHandle_Base::CanGetPlusone ( void  ) const

inline

Check if it is safe to call GetPlusone method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 763 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::IsSetPlusone().

Referenced by CMSChargeHandle_Base::GetPlusone(), and CMSSearchSettings::Validate().

CanGetPrecursorcull()

bool CMSSearchSettings_Base::CanGetPrecursorcull ( void  ) const

inline

Check if it is safe to call GetPrecursorcull method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3910 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetPrecursorcull().

Referenced by CMSSearchSettings_Base::GetPrecursorcull(), and CMSSearchSettings::Validate().

CanGetPrecursormz()

bool CMSSpectrum_Base::CanGetPrecursormz ( void  ) const

inline

Check if it is safe to call GetPrecursormz method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 501 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::IsSetPrecursormz().

Referenced by CMSSpectrum_Base::GetPrecursormz().

CanGetPrecursorsearchtype()

bool CMSSearchSettings_Base::CanGetPrecursorsearchtype ( void  ) const

inline

Check if it is safe to call GetPrecursorsearchtype method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2304 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetPrecursorsearchtype().

Referenced by CMSSearchSettings_Base::GetPrecursorsearchtype(), and CMSSearchSettings::Validate().

CanGetPresearch()

bool CMSLibrarySettings_Base::CanGetPresearch ( void  ) const

inline

Check if it is safe to call GetPresearch method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 350 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::IsSetPresearch().

Referenced by CMSLibrarySettings_Base::GetPresearch().

CanGetProbfollowingion()

bool CMSSearchSettings_Base::CanGetProbfollowingion ( void  ) const

inline

Check if it is safe to call GetProbfollowingion method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 4054 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetProbfollowingion().

Referenced by CMSSearchSettings_Base::GetProbfollowingion(), and CMSSearchSettings::Validate().

CanGetProdlesspre()

bool CMSChargeHandle_Base::CanGetProdlesspre ( void  ) const

inline

Check if it is safe to call GetProdlesspre method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 857 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::IsSetProdlesspre().

Referenced by CMSChargeHandle_Base::GetProdlesspre().

CanGetProduct()

bool CMSImmonium_Base::CanGetProduct ( void  ) const

inline

Check if it is safe to call GetProduct method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 256 of file MSImmonium_.hpp.

References CMSImmonium_Base::IsSetProduct().

Referenced by CMSImmonium_Base::GetProduct().

CanGetProductsearchtype()

bool CMSSearchSettings_Base::CanGetProductsearchtype ( void  ) const

inline

Check if it is safe to call GetProductsearchtype method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2351 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetProductsearchtype().

Referenced by CMSSearchSettings_Base::GetProductsearchtype(), and CMSSearchSettings::Validate().

CanGetProtlength() [1/2]

bool CMSHits_Base::CanGetProtlength ( void  ) const

inline

Check if it is safe to call GetProtlength method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1132 of file MSHits_.hpp.

References CMSHits_Base::IsSetProtlength().

Referenced by CMSHits_Base::GetProtlength().

CanGetProtlength() [2/2]

bool CMSPepHit_Base::CanGetProtlength ( void  ) const

inline

Check if it is safe to call GetProtlength method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 775 of file MSPepHit_.hpp.

References CMSPepHit_Base::IsSetProtlength().

Referenced by CMSPepHit_Base::GetProtlength().

CanGetPseudocount()

bool CMSSearchSettings_Base::CanGetPseudocount ( void  ) const

inline

Check if it is safe to call GetPseudocount method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3495 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings::Validate().

CanGetPsi_ms()

bool CMSModSpec_Base::CanGetPsi_ms ( void  ) const

inline

Check if it is safe to call GetPsi_ms method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 913 of file MSModSpec_.hpp.

References CMSModSpec_Base::IsSetPsi_ms().

Referenced by CMSModSpec_Base::GetPsi_ms().

CanGetPvalue()

bool CMSHits_Base::CanGetPvalue ( void  ) const

inline

Check if it is safe to call GetPvalue method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 775 of file MSHits_.hpp.

References CMSHits_Base::IsSetPvalue().

Referenced by CMSHits_Base::GetPvalue().

CanGetQtofscore()

bool CMSLibrarySettings_Base::CanGetQtofscore ( void  ) const

inline

Check if it is safe to call GetQtofscore method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 491 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::IsSetQtofscore().

Referenced by CMSLibrarySettings_Base::GetQtofscore().

CanGetReplacethresh()

bool CMSIterativeSettings_Base::CanGetReplacethresh ( void  ) const

inline

Check if it is safe to call GetReplacethresh method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 338 of file MSIterativeSettings_.hpp.

References CMSIterativeSettings_Base::IsSetReplacethresh().

Referenced by CMSIterativeSettings_Base::GetReplacethresh(), and CMSSearchSettings::Validate().

CanGetReportedhitcount()

bool CMSSearchSettings_Base::CanGetReportedhitcount ( void  ) const

inline

Check if it is safe to call GetReportedhitcount method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 4501 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetReportedhitcount().

Referenced by CMSSearchSettings_Base::GetReportedhitcount(), and CMSSearchSettings::Validate().

CanGetRequest()

bool CMSSearch_Base::CanGetRequest ( void  ) const

inline

Check if it is safe to call GetRequest method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 198 of file MSSearch_.hpp.

Referenced by COmssa2pepxmlApplication::Run().

CanGetResearchthresh()

bool CMSIterativeSettings_Base::CanGetResearchthresh ( void  ) const

inline

Check if it is safe to call GetResearchthresh method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 244 of file MSIterativeSettings_.hpp.

References CMSIterativeSettings_Base::IsSetResearchthresh().

Referenced by CMSIterativeSettings_Base::GetResearchthresh(), and CMSSearchSettings::Validate().

CanGetResidues()

bool CMSModSpec_Base::CanGetResidues ( void  ) const

inline

Check if it is safe to call GetResidues method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 820 of file MSModSpec_.hpp.

CanGetResponse()

bool CMSSearch_Base::CanGetResponse ( void  ) const

inline

Check if it is safe to call GetResponse method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 223 of file MSSearch_.hpp.

CanGetReversed()

bool CMSPepHit_Base::CanGetReversed ( void  ) const

inline

Check if it is safe to call GetReversed method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 869 of file MSPepHit_.hpp.

References CMSPepHit_Base::IsSetReversed().

Referenced by CMSPepHit_Base::GetReversed().

CanGetReversesearch()

bool CMSSearchSettings_Base::CanGetReversesearch ( void  ) const

inline

Check if it is safe to call GetReversesearch method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 4288 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetReversesearch().

Referenced by CMSSearchSettings_Base::GetReversesearch().

CanGetRid() [1/2]

bool CMSRequest_Base::CanGetRid ( void  ) const

inline

Check if it is safe to call GetRid method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 398 of file MSRequest_.hpp.

References CMSRequest_Base::IsSetRid().

Referenced by CMSRequest_Base::GetRid().

CanGetRid() [2/2]

bool CMSResponse_Base::CanGetRid ( void  ) const

inline

Check if it is safe to call GetRid method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 535 of file MSResponse_.hpp.

References CMSResponse_Base::IsSetRid().

Referenced by CMSResponse_Base::GetRid().

CanGetScale() [1/2]

bool CMSResponse_Base::CanGetScale ( void  ) const

inline

Check if it is safe to call GetScale method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 485 of file MSResponse_.hpp.

Referenced by CMSResponse::PrintCSV().

CanGetScale() [2/2]

bool CMSSearchSettings_Base::CanGetScale ( void  ) const

inline

Check if it is safe to call GetScale method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3328 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings::Validate().

CanGetScores()

bool CMSHits_Base::CanGetScores ( void  ) const

inline

Check if it is safe to call GetScores method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1273 of file MSHits_.hpp.

CanGetSearchb1()

bool CMSSearchSettings_Base::CanGetSearchb1 ( void  ) const

inline

Check if it is safe to call GetSearchb1 method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3545 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings::Validate().

CanGetSearchctermproduct()

bool CMSSearchSettings_Base::CanGetSearchctermproduct ( void  ) const

inline

Check if it is safe to call GetSearchctermproduct method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3595 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings::Validate().

CanGetSeq()

bool CMSBioseq_Base::CanGetSeq ( void  ) const

inline

Check if it is safe to call GetSeq method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 253 of file MSBioseq_.hpp.

CanGetSettingid() [1/2]

bool CMSHitSet_Base::CanGetSettingid ( void  ) const

inline

Check if it is safe to call GetSettingid method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 572 of file MSHitSet_.hpp.

References CMSHitSet_Base::IsSetSettingid().

Referenced by CMSHitSet_Base::GetSettingid().

CanGetSettingid() [2/2]

bool CMSSearchSettings_Base::CanGetSettingid ( void  ) const

inline

Check if it is safe to call GetSettingid method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3842 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetSettingid().

Referenced by CMSSearchSettings_Base::GetSettingid().

CanGetSettings()

bool CMSRequest_Base::CanGetSettings ( void  ) const

inline

Check if it is safe to call GetSettings method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 368 of file MSRequest_.hpp.

Referenced by CMSRequest::GetSettingsById().

CanGetSinglenum()

bool CMSSearchSettings_Base::CanGetSinglenum ( void  ) const

inline

Check if it is safe to call GetSinglenum method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2846 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetSinglenum().

Referenced by CMSSearchSettings_Base::GetSinglenum(), and CMSSearchSettings::Validate().

CanGetSinglewin()

bool CMSSearchSettings_Base::CanGetSinglewin ( void  ) const

inline

Check if it is safe to call GetSinglewin method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2752 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetSinglewin().

Referenced by CMSSearchSettings_Base::GetSinglewin(), and CMSSearchSettings::Validate().

CanGetSite()

bool CMSModHit_Base::CanGetSite ( void  ) const

inline

Check if it is safe to call GetSite method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 207 of file MSModHit_.hpp.

References CMSModHit_Base::IsSetSite().

Referenced by CMSModHit_Base::GetSite().

CanGetSpectra()

bool CMSRequest_Base::CanGetSpectra ( void  ) const

inline

Check if it is safe to call GetSpectra method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 338 of file MSRequest_.hpp.

CanGetStart()

bool CMSPepHit_Base::CanGetStart ( void  ) const

inline

Check if it is safe to call GetStart method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 540 of file MSPepHit_.hpp.

References CMSPepHit_Base::IsSetStart().

Referenced by CMSPepHit_Base::GetStart().

CanGetStop()

bool CMSPepHit_Base::CanGetStop ( void  ) const

inline

Check if it is safe to call GetStop method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 587 of file MSPepHit_.hpp.

References CMSPepHit_Base::IsSetStop().

Referenced by CMSPepHit_Base::GetStop().

CanGetSubsetthresh()

bool CMSIterativeSettings_Base::CanGetSubsetthresh ( void  ) const

inline

Check if it is safe to call GetSubsetthresh method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 291 of file MSIterativeSettings_.hpp.

References CMSIterativeSettings_Base::IsSetSubsetthresh().

Referenced by CMSIterativeSettings_Base::GetSubsetthresh(), and CMSSearchSettings::Validate().

CanGetSuspect()

bool CMSIonAnnot_Base::CanGetSuspect ( void  ) const

inline

Check if it is safe to call GetSuspect method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 244 of file MSIonAnnot_.hpp.

References CMSIonAnnot_Base::IsSetSuspect().

Referenced by CMSIonAnnot_Base::GetSuspect().

CanGetTaxids()

bool CMSSearchSettings_Base::CanGetTaxids ( void  ) const

inline

Check if it is safe to call GetTaxids method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3428 of file MSSearchSettings_.hpp.

CanGetTheomass()

bool CMSHits_Base::CanGetTheomass ( void  ) const

inline

Check if it is safe to call GetTheomass method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 1179 of file MSHits_.hpp.

References CMSHits_Base::IsSetTheomass().

Referenced by CMSHits_Base::GetTheomass().

CanGetTophitnum()

bool CMSSearchSettings_Base::CanGetTophitnum ( void  ) const

inline

Check if it is safe to call GetTophitnum method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3181 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetTophitnum().

Referenced by CMSSearchSettings_Base::GetTophitnum(), and CMSSearchSettings::Validate().

CanGetType()

bool CMSModSpec_Base::CanGetType ( void  ) const

inline

Check if it is safe to call GetType method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 585 of file MSModSpec_.hpp.

References CMSModSpec_Base::IsSetType().

Referenced by CMSModSpec_Base::GetType().

CanGetUnimod()

bool CMSModSpec_Base::CanGetUnimod ( void  ) const

inline

Check if it is safe to call GetUnimod method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 866 of file MSModSpec_.hpp.

References CMSModSpec_Base::IsSetUnimod().

Referenced by CMSModSpec_Base::GetUnimod().

CanGetUseomssascore()

bool CMSLibrarySettings_Base::CanGetUseomssascore ( void  ) const

inline

Check if it is safe to call GetUseomssascore method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 397 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::IsSetUseomssascore().

Referenced by CMSLibrarySettings_Base::GetUseomssascore().

CanGetUserannotation()

bool CMSHitSet_Base::CanGetUserannotation ( void  ) const

inline

Check if it is safe to call GetUserannotation method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 619 of file MSHitSet_.hpp.

References CMSHitSet_Base::IsSetUserannotation().

Referenced by CMSHitSet_Base::GetUserannotation().

CanGetUsereplicatescore()

bool CMSLibrarySettings_Base::CanGetUsereplicatescore ( void  ) const

inline

Check if it is safe to call GetUsereplicatescore method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 444 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::IsSetUsereplicatescore().

Referenced by CMSLibrarySettings_Base::GetUsereplicatescore().

CanGetUsermods()

bool CMSSearchSettings_Base::CanGetUsermods ( void  ) const

inline

Check if it is safe to call GetUsermods method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 3474 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetUsermods().

Referenced by CMSSearchSettings_Base::GetUsermods().

CanGetValue() [1/2]

bool CMSScoreSet_Base::CanGetValue ( void  ) const

inline

Check if it is safe to call GetValue method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 253 of file MSScoreSet_.hpp.

References CMSScoreSet_Base::IsSetValue().

Referenced by CMSScoreSet_Base::GetValue().

CanGetValue() [2/2]

bool CNameValue_Base::CanGetValue ( void  ) const

inline

Check if it is safe to call GetValue method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 254 of file NameValue_.hpp.

References CNameValue_Base::IsSetValue().

Referenced by CNameValue_Base::GetValue().

CanGetVariable()

bool CMSSearchSettings_Base::CanGetVariable ( void  ) const

inline

Check if it is safe to call GetVariable method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2965 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings::Validate().

CanGetVersion()

bool CMSResponse_Base::CanGetVersion ( void  ) const

inline

Check if it is safe to call GetVersion method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 629 of file MSResponse_.hpp.

References CMSResponse_Base::IsSetVersion().

Referenced by CMSResponse_Base::GetVersion().

CanGetZdep()

bool CMSSearchSettings_Base::CanGetZdep ( void  ) const

inline

Check if it is safe to call GetZdep method.

Returns

• true, if the data member is getatable.
• false, otherwise.

Definition at line 2517 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetZdep().

Referenced by CMSSearchSettings_Base::GetZdep(), and CMSSearchSettings::Validate().

CMSBioseq() [1/2]

CMSBioseq::CMSBioseq ( const CMSBioseq &  value )

private

CMSBioseq() [2/2]

CMSBioseq::CMSBioseq ( void  )

inline

Definition at line 86 of file MSBioseq.hpp.

CMSBioseq_Base() [1/2]

CMSBioseq_Base::CMSBioseq_Base ( const CMSBioseq_Base &  )

private

CMSBioseq_Base() [2/2]

END_CLASS_INFO CMSBioseq_Base::CMSBioseq_Base

(

void

)

Definition at line 83 of file MSBioseq_.cpp.

References CObject::IsAllocatedInPool(), CMSBioseq_Base::m_set_State, and CMSBioseq_Base::ResetSeq().

CMSBioseqSet_Base() [1/2]

CMSBioseqSet_Base::CMSBioseqSet_Base ( const CMSBioseqSet_Base &  )

private

CMSBioseqSet_Base() [2/2]

END_CLASS_INFO CMSBioseqSet_Base::CMSBioseqSet_Base

(

void

)

Definition at line 68 of file MSBioseqSet_.cpp.

References CMSBioseqSet_Base::m_set_State.

CMSChargeHandle() [1/2]

CMSChargeHandle::CMSChargeHandle ( const CMSChargeHandle &  value )

private

CMSChargeHandle() [2/2]

CMSChargeHandle::CMSChargeHandle ( void  )

inline

Definition at line 86 of file MSChargeHandle.hpp.

CMSChargeHandle_Base() [1/2]

CMSChargeHandle_Base::CMSChargeHandle_Base ( const CMSChargeHandle_Base &  )

private

CMSChargeHandle_Base() [2/2]

END_CLASS_INFO CMSChargeHandle_Base::CMSChargeHandle_Base

(

void

)

Definition at line 82 of file MSChargeHandle_.cpp.

References CMSChargeHandle_Base::m_set_State.

CMSHits_Base() [1/2]

CMSHits_Base::CMSHits_Base ( const CMSHits_Base &  )

private

CMSHits_Base() [2/2]

END_CLASS_INFO CMSHits_Base::CMSHits_Base

(

void

)

Definition at line 146 of file MSHits_.cpp.

References CMSHits_Base::m_set_State.

CMSHitSet() [1/2]

CMSHitSet::CMSHitSet ( const CMSHitSet &  value )

private

CMSHitSet() [2/2]

CMSHitSet::CMSHitSet ( void  )

inline

Definition at line 86 of file MSHitSet.hpp.

CMSHitSet_Base() [1/2]

CMSHitSet_Base::CMSHitSet_Base ( const CMSHitSet_Base &  )

private

CMSHitSet_Base() [2/2]

END_CLASS_INFO CMSHitSet_Base::CMSHitSet_Base

(

void

)

Definition at line 98 of file MSHitSet_.cpp.

References CMSHitSet_Base::m_set_State.

CMSImmonium() [1/2]

CMSImmonium::CMSImmonium ( const CMSImmonium &  value )

private

CMSImmonium() [2/2]

CMSImmonium::CMSImmonium ( void  )

inline

Definition at line 86 of file MSImmonium.hpp.

CMSImmonium_Base() [1/2]

CMSImmonium_Base::CMSImmonium_Base ( const CMSImmonium_Base &  )

private

CMSImmonium_Base() [2/2]

END_CLASS_INFO CMSImmonium_Base::CMSImmonium_Base

(

void

)

Definition at line 80 of file MSImmonium_.cpp.

References CMSImmonium_Base::m_set_State.

CMSInFile() [1/2]

CMSInFile::CMSInFile ( const CMSInFile &  value )

private

CMSInFile() [2/2]

CMSInFile::CMSInFile ( void  )

inline

Definition at line 86 of file MSInFile.hpp.

CMSInFile_Base() [1/2]

CMSInFile_Base::CMSInFile_Base ( const CMSInFile_Base &  )

private

CMSInFile_Base() [2/2]

END_CLASS_INFO CMSInFile_Base::CMSInFile_Base

(

void

)

Definition at line 74 of file MSInFile_.cpp.

References CMSInFile_Base::m_set_State.

CMSIon() [1/2]

CMSIon::CMSIon ( const CMSIon &  value )

private

CMSIon() [2/2]

CMSIon::CMSIon ( void  )

inline

Definition at line 86 of file MSIon.hpp.

CMSIon_Base() [1/2]

CMSIon_Base::CMSIon_Base ( const CMSIon_Base &  )

private

CMSIon_Base() [2/2]

END_CLASS_INFO CMSIon_Base::CMSIon_Base

(

void

)

Definition at line 96 of file MSIon_.cpp.

References CMSIon_Base::m_set_State.

CMSIonAnnot() [1/2]

CMSIonAnnot::CMSIonAnnot ( const CMSIonAnnot &  value )

private

CMSIonAnnot() [2/2]

CMSIonAnnot::CMSIonAnnot ( void  )

inline

Definition at line 86 of file MSIonAnnot.hpp.

CMSIonAnnot_Base() [1/2]

CMSIonAnnot_Base::CMSIonAnnot_Base ( const CMSIonAnnot_Base &  )

private

CMSIonAnnot_Base() [2/2]

END_CLASS_INFO CMSIonAnnot_Base::CMSIonAnnot_Base

(

void

)

Definition at line 70 of file MSIonAnnot_.cpp.

References CMSIonAnnot_Base::m_set_State.

CMSIterativeSettings() [1/2]

CMSIterativeSettings::CMSIterativeSettings ( const CMSIterativeSettings &  value )

private

CMSIterativeSettings() [2/2]

CMSIterativeSettings::CMSIterativeSettings ( void  )

inline

Definition at line 86 of file MSIterativeSettings.hpp.

CMSIterativeSettings_Base() [1/2]

CMSIterativeSettings_Base::CMSIterativeSettings_Base ( const CMSIterativeSettings_Base &  )

private

CMSIterativeSettings_Base() [2/2]

END_CLASS_INFO CMSIterativeSettings_Base::CMSIterativeSettings_Base

(

void

)

Definition at line 70 of file MSIterativeSettings_.cpp.

References CMSIterativeSettings_Base::m_set_State.

CMSLibrarySettings() [1/2]

CMSLibrarySettings::CMSLibrarySettings ( const CMSLibrarySettings &  value )

private

CMSLibrarySettings() [2/2]

CMSLibrarySettings::CMSLibrarySettings ( void  )

inline

Definition at line 86 of file MSLibrarySettings.hpp.

CMSLibrarySettings_Base() [1/2]

CMSLibrarySettings_Base::CMSLibrarySettings_Base ( const CMSLibrarySettings_Base &  )

private

CMSLibrarySettings_Base() [2/2]

END_CLASS_INFO CMSLibrarySettings_Base::CMSLibrarySettings_Base

(

void

)

Definition at line 80 of file MSLibrarySettings_.cpp.

References CMSLibrarySettings_Base::m_set_State.

CMSMassSet() [1/2]

CMSMassSet::CMSMassSet ( const CMSMassSet &  value )

private

CMSMassSet() [2/2]

CMSMassSet::CMSMassSet ( void  )

inline

Definition at line 86 of file MSMassSet.hpp.

CMSMassSet_Base() [1/2]

CMSMassSet_Base::CMSMassSet_Base ( const CMSMassSet_Base &  )

private

CMSMassSet_Base() [2/2]

END_CLASS_INFO CMSMassSet_Base::CMSMassSet_Base

(

void

)

Definition at line 70 of file MSMassSet_.cpp.

References CMSMassSet_Base::m_set_State.

CMSModHit() [1/2]

CMSModHit::CMSModHit ( const CMSModHit &  value )

private

CMSModHit() [2/2]

CMSModHit::CMSModHit ( void  )

inline

Definition at line 86 of file MSModHit.hpp.

CMSModHit_Base() [1/2]

CMSModHit_Base::CMSModHit_Base ( const CMSModHit_Base &  )

private

CMSModHit_Base() [2/2]

END_CLASS_INFO CMSModHit_Base::CMSModHit_Base

(

void

)

Definition at line 68 of file MSModHit_.cpp.

References CMSModHit_Base::m_set_State.

CMSModSpec() [1/2]

CMSModSpec::CMSModSpec ( const CMSModSpec &  value )

private

CMSModSpec() [2/2]

CMSModSpec::CMSModSpec ( void  )

inline

Definition at line 86 of file MSModSpec.hpp.

CMSModSpec_Base() [1/2]

CMSModSpec_Base::CMSModSpec_Base ( const CMSModSpec_Base &  )

private

CMSModSpec_Base() [2/2]

END_CLASS_INFO CMSModSpec_Base::CMSModSpec_Base

(

void

)

Definition at line 120 of file MSModSpec_.cpp.

References CMSModSpec_Base::m_set_State.

CMSModSpecSet_Base() [1/2]

CMSModSpecSet_Base::CMSModSpecSet_Base ( const CMSModSpecSet_Base &  )

private

CMSModSpecSet_Base() [2/2]

END_CLASS_INFO CMSModSpecSet_Base::CMSModSpecSet_Base

(

void

)

Definition at line 68 of file MSModSpecSet_.cpp.

References CMSModSpecSet_Base::m_set_State.

CMSMZHit() [1/2]

CMSMZHit::CMSMZHit ( const CMSMZHit &  value )

private

CMSMZHit() [2/2]

CMSMZHit::CMSMZHit ( void  )

inline

Definition at line 86 of file MSMZHit.hpp.

CMSMZHit_Base() [1/2]

CMSMZHit_Base::CMSMZHit_Base ( const CMSMZHit_Base &  )

private

CMSMZHit_Base() [2/2]

END_CLASS_INFO CMSMZHit_Base::CMSMZHit_Base

(

void

)

Definition at line 114 of file MSMZHit_.cpp.

References CMSMZHit_Base::m_set_State.

CMSOutFile() [1/2]

CMSOutFile::CMSOutFile ( const CMSOutFile &  value )

private

CMSOutFile() [2/2]

CMSOutFile::CMSOutFile ( void  )

inline

Definition at line 86 of file MSOutFile.hpp.

CMSOutFile_Base() [1/2]

CMSOutFile_Base::CMSOutFile_Base ( const CMSOutFile_Base &  )

private

CMSOutFile_Base() [2/2]

END_CLASS_INFO CMSOutFile_Base::CMSOutFile_Base

(

void

)

Definition at line 76 of file MSOutFile_.cpp.

References CMSOutFile_Base::m_set_State.

CMSPepHit() [1/2]

CMSPepHit::CMSPepHit ( const CMSPepHit &  value )

private

CMSPepHit() [2/2]

CMSPepHit::CMSPepHit ( void  )

inline

Definition at line 86 of file MSPepHit.hpp.

CMSPepHit_Base() [1/2]

CMSPepHit_Base::CMSPepHit_Base ( const CMSPepHit_Base &  )

private

CMSPepHit_Base() [2/2]

END_CLASS_INFO CMSPepHit_Base::CMSPepHit_Base

(

void

)

Definition at line 108 of file MSPepHit_.cpp.

References CMSPepHit_Base::m_set_State.

CMSRequest_Base() [1/2]

CMSRequest_Base::CMSRequest_Base ( const CMSRequest_Base &  )

private

CMSRequest_Base() [2/2]

END_CLASS_INFO CMSRequest_Base::CMSRequest_Base

(

void

)

Definition at line 146 of file MSRequest_.cpp.

References CObject::IsAllocatedInPool(), CMSRequest_Base::m_set_State, CMSRequest_Base::ResetSettings(), and CMSRequest_Base::ResetSpectra().

CMSResponse_Base() [1/2]

CMSResponse_Base::CMSResponse_Base ( const CMSResponse_Base &  )

private

CMSResponse_Base() [2/2]

END_CLASS_INFO CMSResponse_Base::CMSResponse_Base

(

void

)

Definition at line 123 of file MSResponse_.cpp.

References CMSResponse_Base::m_set_State.

CMSScoreSet() [1/2]

CMSScoreSet::CMSScoreSet ( const CMSScoreSet &  value )

private

CMSScoreSet() [2/2]

CMSScoreSet::CMSScoreSet ( void  )

inline

Definition at line 86 of file MSScoreSet.hpp.

CMSScoreSet_Base() [1/2]

CMSScoreSet_Base::CMSScoreSet_Base ( const CMSScoreSet_Base &  )

private

CMSScoreSet_Base() [2/2]

END_CLASS_INFO CMSScoreSet_Base::CMSScoreSet_Base

(

void

)

Definition at line 74 of file MSScoreSet_.cpp.

References CMSScoreSet_Base::m_set_State.

CMSSearch_Base() [1/2]

CMSSearch_Base::CMSSearch_Base ( const CMSSearch_Base &  )

private

CMSSearch_Base() [2/2]

END_CLASS_INFO CMSSearch_Base::CMSSearch_Base

(

void

)

Definition at line 82 of file MSSearch_.cpp.

References CMSSearch_Base::m_set_State.

CMSSearchSettings_Base() [1/2]

CMSSearchSettings_Base::CMSSearchSettings_Base ( const CMSSearchSettings_Base &  )

private

CMSSearchSettings_Base() [2/2]

END_CLASS_INFO CMSSearchSettings_Base::CMSSearchSettings_Base

(

void

)

Definition at line 299 of file MSSearchSettings_.cpp.

References CMSSearchSettings_Base::m_set_State.

CMSSearchSettingsSet() [1/2]

CMSSearchSettingsSet::CMSSearchSettingsSet ( const CMSSearchSettingsSet &  value )

private

CMSSearchSettingsSet() [2/2]

CMSSearchSettingsSet::CMSSearchSettingsSet ( void  )

inline

Definition at line 86 of file MSSearchSettingsSet.hpp.

CMSSearchSettingsSet_Base() [1/2]

CMSSearchSettingsSet_Base::CMSSearchSettingsSet_Base ( const CMSSearchSettingsSet_Base &  )

private

CMSSearchSettingsSet_Base() [2/2]

END_CLASS_INFO CMSSearchSettingsSet_Base::CMSSearchSettingsSet_Base

(

void

)

Definition at line 68 of file MSSearchSettingsSet_.cpp.

References CMSSearchSettingsSet_Base::m_set_State.

CMSSpectrum() [1/2]

CMSSpectrum::CMSSpectrum ( const CMSSpectrum &  value )

private

CMSSpectrum() [2/2]

CMSSpectrum::CMSSpectrum ( void  )

inline

Definition at line 86 of file MSSpectrum.hpp.

CMSSpectrum_Base() [1/2]

CMSSpectrum_Base::CMSSpectrum_Base ( const CMSSpectrum_Base &  )

private

CMSSpectrum_Base() [2/2]

END_CLASS_INFO CMSSpectrum_Base::CMSSpectrum_Base

(

void

)

Definition at line 111 of file MSSpectrum_.cpp.

References CMSSpectrum_Base::m_set_State.

CMSSpectrumset() [1/2]

CMSSpectrumset::CMSSpectrumset ( const CMSSpectrumset &  value )

private

CMSSpectrumset() [2/2]

CMSSpectrumset::CMSSpectrumset ( void  )

inline

Definition at line 86 of file MSSpectrumset.hpp.

CMSSpectrumset_Base() [1/2]

CMSSpectrumset_Base::CMSSpectrumset_Base ( const CMSSpectrumset_Base &  )

private

CMSSpectrumset_Base() [2/2]

END_CLASS_INFO CMSSpectrumset_Base::CMSSpectrumset_Base

(

void

)

Definition at line 68 of file MSSpectrumset_.cpp.

References CMSSpectrumset_Base::m_set_State.

CNameValue() [1/2]

CNameValue::CNameValue ( const CNameValue &  value )

private

CNameValue() [2/2]

CNameValue::CNameValue ( void  )

inline

Definition at line 86 of file NameValue.hpp.

CNameValue_Base() [1/2]

CNameValue_Base::CNameValue_Base ( const CNameValue_Base &  )

private

CNameValue_Base() [2/2]

END_CLASS_INFO CNameValue_Base::CNameValue_Base

(

void

)

Definition at line 80 of file NameValue_.cpp.

References CNameValue_Base::m_set_State.

DECLARE_INTERNAL_TYPE_INFO() [1/27]

CMSBioseq_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [2/27]

CMSBioseqSet_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [3/27]

CMSChargeHandle_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [4/27]

CMSHits_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [5/27]

CMSHitSet_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [6/27]

CMSImmonium_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [7/27]

CMSInFile_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [8/27]

CMSIon_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [9/27]

CMSIonAnnot_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [10/27]

CMSIterativeSettings_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [11/27]

CMSLibrarySettings_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [12/27]

CMSMassSet_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [13/27]

CMSModHit_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [14/27]

CMSModSpec_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [15/27]

CMSModSpecSet_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [16/27]

CMSMZHit_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [17/27]

CMSOutFile_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [18/27]

CMSPepHit_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [19/27]

CMSRequest_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [20/27]

CMSResponse_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [21/27]

CMSScoreSet_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [22/27]

CMSSearch_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [23/27]

CMSSearchSettings_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [24/27]

CMSSearchSettingsSet_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [25/27]

CMSSpectrum_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [26/27]

CMSSpectrumset_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

DECLARE_INTERNAL_TYPE_INFO() [27/27]

CNameValue_Base::DECLARE_INTERNAL_TYPE_INFO

(

)

Get() [1/4]

const CMSBioseqSet_Base::Tdata & CMSBioseqSet_Base::Get ( void  ) const

inline

Get the member data.

Returns

Reference to the member data.

Definition at line 164 of file MSBioseqSet_.hpp.

References CMSBioseqSet_Base::m_data.

Referenced by CMSBioseqSet::GetBioseqByOid().

Get() [2/4]

const CMSModSpecSet_Base::Tdata & CMSModSpecSet_Base::Get ( void  ) const

inline

Get the member data.

Returns

Reference to the member data.

Definition at line 165 of file MSModSpecSet_.hpp.

References CMSModSpecSet_Base::m_data.

Referenced by CMSModSpecSet::Append(), and CMSModSpecSet::CreateArrays().

Get() [3/4]

const CMSSearchSettingsSet_Base::Tdata & CMSSearchSettingsSet_Base::Get ( void  ) const

inline

Get the member data.

Returns

Reference to the member data.

Definition at line 164 of file MSSearchSettingsSet_.hpp.

References CMSSearchSettingsSet_Base::m_data.

Get() [4/4]

const CMSSpectrumset_Base::Tdata & CMSSpectrumset_Base::Get ( void  ) const

inline

Get the member data.

Returns

Reference to the member data.

Definition at line 165 of file MSSpectrumset_.hpp.

References CMSSpectrumset_Base::m_data.

GetAbundance()

const CMSSpectrum_Base::TAbundance & CMSSpectrum_Base::GetAbundance ( void  ) const

inline

Get the Abundance member data.

Returns

Reference to the member data.

Definition at line 579 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_Abundance.

Referenced by CMSPeak::Read().

GetAccession()

const CMSPepHit_Base::TAccession & CMSPepHit_Base::GetAccession ( void  ) const

inline

Get the Accession member data.

Returns

Reference to the member data.

Definition at line 687 of file MSPepHit_.hpp.

References CMSPepHit_Base::CanGetAccession(), CMSPepHit_Base::m_Accession, and CSerialObject::ThrowUnassigned().

GetAnnotation()

const CMSMZHit_Base::TAnnotation & CMSMZHit_Base::GetAnnotation ( void  ) const

inline

Get the Annotation member data.

Returns

Reference to the member data.

Definition at line 679 of file MSMZHit_.hpp.

References CMSMZHit_Base::CanGetAnnotation(), CMSMZHit_Base::m_Annotation, and CSerialObject::ThrowUnassigned().

GetAutomassadjust()

CMSSearchSettings_Base::TAutomassadjust CMSSearchSettings_Base::GetAutomassadjust ( void  ) const

inline

Get the Automassadjust member data.

Returns

Copy of the member data.

Definition at line 4161 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetAutomassadjust(), CMSSearchSettings_Base::m_Automassadjust, and CSerialObject::ThrowUnassigned().

Referenced by CMSSearchSettings::Validate().

GetAveragemass() [1/2]

CMSMassSet_Base::TAveragemass CMSMassSet_Base::GetAveragemass ( void  ) const

inline

Get the Averagemass member data.

Returns

Copy of the member data.

Definition at line 301 of file MSMassSet_.hpp.

References CMSMassSet_Base::CanGetAveragemass(), CMSMassSet_Base::m_Averagemass, and CSerialObject::ThrowUnassigned().

GetAveragemass() [2/2]

CMSModSpec_Base::TAveragemass CMSModSpec_Base::GetAveragemass ( void  ) const

inline

Get the Averagemass member data.

Returns

Copy of the member data.

Definition at line 739 of file MSModSpec_.hpp.

References CMSModSpec_Base::CanGetAveragemass(), CMSModSpec_Base::m_Averagemass, and CSerialObject::ThrowUnassigned().

GetBioseqs()

const CMSResponse_Base::TBioseqs & CMSResponse_Base::GetBioseqs ( void  ) const

inline

Get the Bioseqs member data.

Returns

Reference to the member data.

Definition at line 776 of file MSResponse_.hpp.

References CMSResponse_Base::CanGetBioseqs(), CMSResponse_Base::m_Bioseqs, and CSerialObject::ThrowUnassigned().

GetCalccharge()

CMSChargeHandle_Base::TCalccharge CMSChargeHandle_Base::GetCalccharge ( void  ) const

inline

Get the Calccharge member data.

Returns

Copy of the member data.

Definition at line 582 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_Calccharge.

Referenced by CMSPeak::SetComputedCharge(), and CMSSearchSettings::Validate().

GetCalcplusone()

CMSChargeHandle_Base::TCalcplusone CMSChargeHandle_Base::GetCalcplusone ( void  ) const

inline

Get the Calcplusone member data.

Returns

Copy of the member data.

Definition at line 532 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_Calcplusone.

Referenced by CMSPeak::SetComputedCharge(), and CMSSearchSettings::Validate().

GetCharge() [1/3]

CMSHits_Base::TCharge CMSHits_Base::GetCharge ( void  ) const

inline

Get the Charge member data.

Returns

Copy of the member data.

Definition at line 835 of file MSHits_.hpp.

References CMSHits_Base::CanGetCharge(), CMSHits_Base::m_Charge, and CSerialObject::ThrowUnassigned().

GetCharge() [2/3]

CMSMZHit_Base::TCharge CMSMZHit_Base::GetCharge ( void  ) const

inline

Get the Charge member data.

Returns

Copy of the member data.

Definition at line 477 of file MSMZHit_.hpp.

References CMSMZHit_Base::CanGetCharge(), CMSMZHit_Base::m_Charge, and CSerialObject::ThrowUnassigned().

GetCharge() [3/3]

const CMSSpectrum_Base::TCharge & CMSSpectrum_Base::GetCharge ( void  ) const

inline

Get the Charge member data.

Returns

Reference to the member data.

Definition at line 482 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_Charge.

Referenced by CMSPeak::SetComputedCharge().

GetChargehandling()

const CMSSearchSettings_Base::TChargehandling & CMSSearchSettings_Base::GetChargehandling ( void  ) const

inline

Get the Chargehandling member data.

Returns

Reference to the member data.

Definition at line 3459 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetChargehandling(), CMSSearchSettings_Base::m_Chargehandling, and CSerialObject::ThrowUnassigned().

Referenced by CLadder::CreateLadder(), CMSPeak::CullChargeAndWhich(), CMSPeak::ReadAndProcess(), and CMSSearchSettings::Validate().

GetConsidermult()

CMSChargeHandle_Base::TConsidermult CMSChargeHandle_Base::GetConsidermult ( void  ) const

inline

Get the Considermult member data.

Returns

Copy of the member data.

Definition at line 732 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_Considermult.

Referenced by CMSPeak::SetComputedCharge(), and CMSSearchSettings::Validate().

GetCuthi()

CMSSearchSettings_Base::TCuthi CMSSearchSettings_Base::GetCuthi ( void  ) const

inline

Get the Cuthi member data.

Returns

Copy of the member data.

Definition at line 2671 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetCuthi(), CMSSearchSettings_Base::m_Cuthi, and CSerialObject::ThrowUnassigned().

Referenced by CMSSearchSettings::Validate().

GetCutinc()

CMSSearchSettings_Base::TCutinc CMSSearchSettings_Base::GetCutinc ( void  ) const

inline

Get the Cutinc member data.

Returns

Copy of the member data.

Definition at line 2718 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetCutinc(), CMSSearchSettings_Base::m_Cutinc, and CSerialObject::ThrowUnassigned().

Referenced by CMSSearchSettings::Validate().

GetCutlo()

CMSSearchSettings_Base::TCutlo CMSSearchSettings_Base::GetCutlo ( void  ) const

inline

Get the Cutlo member data.

Returns

Copy of the member data.

Definition at line 2624 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetCutlo(), CMSSearchSettings_Base::m_Cutlo, and CSerialObject::ThrowUnassigned().

Referenced by CMSPeak::SmartCull(), and CMSSearchSettings::Validate().

GetCutoff()

CMSSearchSettings_Base::TCutoff CMSSearchSettings_Base::GetCutoff ( void  ) const

inline

Get the Cutoff member data.

Returns

Copy of the member data.

Definition at line 2577 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetCutoff(), CMSSearchSettings_Base::m_Cutoff, and CSerialObject::ThrowUnassigned().

GetDb()

const CMSSearchSettings_Base::TDb & CMSSearchSettings_Base::GetDb ( void  ) const

inline

Get the Db member data.

Returns

Reference to the member data.

Definition at line 3140 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetDb(), CMSSearchSettings_Base::m_Db, and CSerialObject::ThrowUnassigned().

Referenced by COMSSA::Run(), and CMSSearchSettings::Validate().

GetDbversion()

CMSResponse_Base::TDbversion CMSResponse_Base::GetDbversion ( void  ) const

inline

Get the Dbversion member data.

Returns

Copy of the member data.

Definition at line 736 of file MSResponse_.hpp.

References CMSResponse_Base::CanGetDbversion(), CMSResponse_Base::m_Dbversion, and CSerialObject::ThrowUnassigned().

GetDefline()

const CMSPepHit_Base::TDefline & CMSPepHit_Base::GetDefline ( void  ) const

inline

Get the Defline member data.

Returns

Reference to the member data.

Definition at line 734 of file MSPepHit_.hpp.

References CMSPepHit_Base::CanGetDefline(), CMSPepHit_Base::m_Defline, and CSerialObject::ThrowUnassigned().

GetDoublenum()

CMSSearchSettings_Base::TDoublenum CMSSearchSettings_Base::GetDoublenum ( void  ) const

inline

Get the Doublenum member data.

Returns

Copy of the member data.

Definition at line 2906 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetDoublenum(), CMSSearchSettings_Base::m_Doublenum, and CSerialObject::ThrowUnassigned().

Referenced by CMSPeak::SmartCull(), and CMSSearchSettings::Validate().

GetDoublewin()

CMSSearchSettings_Base::TDoublewin CMSSearchSettings_Base::GetDoublewin ( void  ) const

inline

Get the Doublewin member data.

Returns

Copy of the member data.

Definition at line 2812 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetDoublewin(), CMSSearchSettings_Base::m_Doublewin, and CSerialObject::ThrowUnassigned().

Referenced by CMSPeak::SmartCull(), and CMSSearchSettings::Validate().

GetEmail()

const CMSResponse_Base::TEmail & CMSResponse_Base::GetEmail ( void  ) const

inline

Get the Email member data.

Returns

Reference to the member data.

Definition at line 682 of file MSResponse_.hpp.

References CMSResponse_Base::CanGetEmail(), CMSResponse_Base::m_Email, and CSerialObject::ThrowUnassigned().

GetEnzyme()

CMSSearchSettings_Base::TEnzyme CMSSearchSettings_Base::GetEnzyme ( void  ) const

inline

Get the Enzyme member data.

Returns

Copy of the member data.

Definition at line 3003 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetEnzyme(), CMSSearchSettings_Base::m_Enzyme, and CSerialObject::ThrowUnassigned().

Referenced by CMSSearchSettings::Validate().

GetError() [1/2]

CMSHitSet_Base::TError CMSHitSet_Base::GetError ( void  ) const

inline

Get the Error member data.

Returns

Copy of the member data.

Definition at line 463 of file MSHitSet_.hpp.

References CMSHitSet_Base::CanGetError(), CMSHitSet_Base::m_Error, and CSerialObject::ThrowUnassigned().

GetError() [2/2]

CMSResponse_Base::TError CMSResponse_Base::GetError ( void  ) const

inline

Get the Error member data.

Returns

Copy of the member data.

Definition at line 595 of file MSResponse_.hpp.

References CMSResponse_Base::CanGetError(), CMSResponse_Base::m_Error, and CSerialObject::ThrowUnassigned().

GetEvalue()

CMSHits_Base::TEvalue CMSHits_Base::GetEvalue ( void  ) const

inline

Get the Evalue member data.

Returns

Copy of the member data.

Definition at line 741 of file MSHits_.hpp.

References CMSHits_Base::CanGetEvalue(), CMSHits_Base::m_Evalue, and CSerialObject::ThrowUnassigned().

GetExactmass()

CMSSearchSettings_Base::TExactmass CMSSearchSettings_Base::GetExactmass ( void  ) const

inline

Get the Exactmass member data.

Returns

Copy of the member data.

Definition at line 3808 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetExactmass(), CMSSearchSettings_Base::m_Exactmass, and CSerialObject::ThrowUnassigned().

Referenced by CLadder::CreateLadder(), and CMSSearchSettings::Validate().

GetFixed()

const CMSSearchSettings_Base::TFixed & CMSSearchSettings_Base::GetFixed ( void  ) const

inline

Get the Fixed member data.

Returns

Reference to the member data.

Definition at line 2946 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Fixed.

Referenced by CMSSearchSettings::Validate().

GetGi()

CMSPepHit_Base::TGi CMSPepHit_Base::GetGi ( void  ) const

inline

Get the Gi member data.

Returns

Copy of the member data.

Definition at line 647 of file MSPepHit_.hpp.

References CMSPepHit_Base::CanGetGi(), CMSPepHit_Base::m_Gi, and CSerialObject::ThrowUnassigned().

GetHitlistlen()

CMSSearchSettings_Base::THitlistlen CMSSearchSettings_Base::GetHitlistlen ( void  ) const

inline

Get the Hitlistlen member data.

Returns

Copy of the member data.

Definition at line 3103 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Hitlistlen.

Referenced by CMSSearchSettings::Validate().

GetHits()

const CMSHitSet_Base::THits & CMSHitSet_Base::GetHits ( void  ) const

inline

Get the Hits member data.

Returns

Reference to the member data.

Definition at line 503 of file MSHitSet_.hpp.

References CMSHitSet_Base::m_Hits.

GetHitsets()

const CMSResponse_Base::THitsets & CMSResponse_Base::GetHitsets ( void  ) const

inline

Get the Hitsets member data.

Returns

Reference to the member data.

Definition at line 466 of file MSResponse_.hpp.

References CMSResponse_Base::m_Hitsets.

Referenced by CMSResponse::FindHitSet(), CMSResponse::GetOidsBelowThreshold(), CMSResponse::PrintCSV(), and CReadresult::Run().

GetIds() [1/2]

const CMSHitSet_Base::TIds & CMSHitSet_Base::GetIds ( void  ) const

inline

Get the Ids member data.

Returns

Reference to the member data.

Definition at line 528 of file MSHitSet_.hpp.

References CMSHitSet_Base::m_Ids.

GetIds() [2/2]

const CMSSpectrum_Base::TIds & CMSSpectrum_Base::GetIds ( void  ) const

inline

Get the Ids member data.

Returns

Reference to the member data.

Definition at line 651 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_Ids.

Referenced by CMSPeak::ReadAndProcess().

GetImmonium()

const CMSIon_Base::TImmonium & CMSIon_Base::GetImmonium ( void  ) const

inline

Get the Immonium member data.

Returns

Reference to the member data.

Definition at line 443 of file MSIon_.hpp.

References CMSIon_Base::CanGetImmonium(), CMSIon_Base::m_Immonium, and CSerialObject::ThrowUnassigned().

GetIncluderequest()

CMSOutFile_Base::TIncluderequest CMSOutFile_Base::GetIncluderequest ( void  ) const

inline

Get the Includerequest member data.

Returns

Copy of the member data.

Definition at line 356 of file MSOutFile_.hpp.

References CMSOutFile_Base::CanGetIncluderequest(), CMSOutFile_Base::m_Includerequest, and CSerialObject::ThrowUnassigned().

GetIndex()

CMSMZHit_Base::TIndex CMSMZHit_Base::GetIndex ( void  ) const

inline

Get the Index member data.

Returns

Copy of the member data.

Definition at line 618 of file MSMZHit_.hpp.

References CMSMZHit_Base::CanGetIndex(), CMSMZHit_Base::m_Index, and CSerialObject::ThrowUnassigned().

GetInfile()

const CMSInFile_Base::TInfile & CMSInFile_Base::GetInfile ( void  ) const

inline

Get the Infile member data.

Returns

Reference to the member data.

Definition at line 214 of file MSInFile_.hpp.

References CMSInFile_Base::CanGetInfile(), CMSInFile_Base::m_Infile, and CSerialObject::ThrowUnassigned().

GetInfiles()

const CMSSearchSettings_Base::TInfiles & CMSSearchSettings_Base::GetInfiles ( void  ) const

inline

Get the Infiles member data.

Returns

Reference to the member data.

Definition at line 3963 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Infiles.

Referenced by COMSSA::Run().

GetInfiletype()

CMSInFile_Base::TInfiletype CMSInFile_Base::GetInfiletype ( void  ) const

inline

Get the Infiletype member data.

Returns

Copy of the member data.

Definition at line 268 of file MSInFile_.hpp.

References CMSInFile_Base::CanGetInfiletype(), CMSInFile_Base::m_Infiletype, and CSerialObject::ThrowUnassigned().

GetInternal()

const CMSIon_Base::TInternal & CMSIon_Base::GetInternal ( void  ) const

inline

Get the Internal member data.

Returns

Reference to the member data.

Definition at line 396 of file MSIon_.hpp.

References CMSIon_Base::CanGetInternal(), CMSIon_Base::m_Internal, and CSerialObject::ThrowUnassigned().

GetIon()

CMSMZHit_Base::TIon CMSMZHit_Base::GetIon ( void  ) const

inline

Get the Ion member data.

Returns

Copy of the member data.

Definition at line 430 of file MSMZHit_.hpp.

References CMSMZHit_Base::CanGetIon(), CMSMZHit_Base::m_Ion, and CSerialObject::ThrowUnassigned().

GetIonstosearch()

const CMSSearchSettings_Base::TIonstosearch & CMSSearchSettings_Base::GetIonstosearch ( void  ) const

inline

Get the Ionstosearch member data.

Returns

Reference to the member data.

Definition at line 2404 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Ionstosearch.

Referenced by CMSSearchSettings::Validate().

GetIscale()

CMSSpectrum_Base::TIscale CMSSpectrum_Base::GetIscale ( void  ) const

inline

Get the Iscale member data.

Returns

Copy of the member data.

Definition at line 611 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::CanGetIscale(), CMSSpectrum_Base::m_Iscale, and CSerialObject::ThrowUnassigned().

GetIsotope()

CMSIon_Base::TIsotope CMSIon_Base::GetIsotope ( void  ) const

inline

Get the Isotope member data.

Returns

Copy of the member data.

Definition at line 356 of file MSIon_.hpp.

References CMSIon_Base::CanGetIsotope(), CMSIon_Base::m_Isotope, and CSerialObject::ThrowUnassigned().

GetIterativesettings()

const CMSSearchSettings_Base::TIterativesettings & CMSSearchSettings_Base::GetIterativesettings ( void  ) const

inline

Get the Iterativesettings member data.

Returns

Reference to the member data.

Definition at line 3895 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetIterativesettings(), CMSSearchSettings_Base::m_Iterativesettings, and CSerialObject::ThrowUnassigned().

Referenced by CMSSearchSettings::Validate().

GetLibaccession()

const CMSHits_Base::TLibaccession & CMSHits_Base::GetLibaccession ( void  ) const

inline

Get the Libaccession member data.

Returns

Reference to the member data.

Definition at line 1304 of file MSHits_.hpp.

References CMSHits_Base::CanGetLibaccession(), CMSHits_Base::m_Libaccession, and CSerialObject::ThrowUnassigned().

GetLibnames()

const CMSLibrarySettings_Base::TLibnames & CMSLibrarySettings_Base::GetLibnames ( void  ) const

inline

Get the Libnames member data.

Returns

Reference to the member data.

Definition at line 331 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::m_Libnames.

GetLibsearchsettings()

const CMSSearchSettings_Base::TLibsearchsettings & CMSSearchSettings_Base::GetLibsearchsettings ( void  ) const

inline

Get the Libsearchsettings member data.

Returns

Reference to the member data.

Definition at line 4248 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetLibsearchsettings(), CMSSearchSettings_Base::m_Libsearchsettings, and CSerialObject::ThrowUnassigned().

GetLomasscutoff()

CMSSearchSettings_Base::TLomasscutoff CMSSearchSettings_Base::GetLomasscutoff ( void  ) const

inline

Get the Lomasscutoff member data.

Returns

Copy of the member data.

Definition at line 4208 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetLomasscutoff(), CMSSearchSettings_Base::m_Lomasscutoff, and CSerialObject::ThrowUnassigned().

GetMass()

CMSHits_Base::TMass CMSHits_Base::GetMass ( void  ) const

inline

Get the Mass member data.

Returns

Copy of the member data.

Definition at line 979 of file MSHits_.hpp.

References CMSHits_Base::CanGetMass(), CMSHits_Base::m_Mass, and CSerialObject::ThrowUnassigned().

GetMassdiff()

CMSIonAnnot_Base::TMassdiff CMSIonAnnot_Base::GetMassdiff ( void  ) const

inline

Get the Massdiff member data.

Returns

Copy of the member data.

Definition at line 304 of file MSIonAnnot_.hpp.

References CMSIonAnnot_Base::CanGetMassdiff(), CMSIonAnnot_Base::m_Massdiff, and CSerialObject::ThrowUnassigned().

GetMaxcharge()

CMSChargeHandle_Base::TMaxcharge CMSChargeHandle_Base::GetMaxcharge ( void  ) const

inline

Get the Maxcharge member data.

Returns

Copy of the member data.

Definition at line 682 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_Maxcharge.

Referenced by CMSPeak::SetComputedCharge(), and CMSSearchSettings::Validate().

GetMaxmods()

CMSSearchSettings_Base::TMaxmods CMSSearchSettings_Base::GetMaxmods ( void  ) const

inline

Get the Maxmods member data.

Returns

Copy of the member data.

Definition at line 3397 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Maxmods.

Referenced by CMSSearchSettings::Validate().

GetMaxnoenzyme()

CMSSearchSettings_Base::TMaxnoenzyme CMSSearchSettings_Base::GetMaxnoenzyme ( void  ) const

inline

Get the Maxnoenzyme member data.

Returns

Copy of the member data.

Definition at line 3764 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Maxnoenzyme.

Referenced by CMSSearchSettings::Validate().

GetMaxproductcharge()

CMSChargeHandle_Base::TMaxproductcharge CMSChargeHandle_Base::GetMaxproductcharge ( void  ) const

inline

Get the Maxproductcharge member data.

Returns

Copy of the member data.

Definition at line 823 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::CanGetMaxproductcharge(), CMSChargeHandle_Base::m_Maxproductcharge, and CSerialObject::ThrowUnassigned().

Referenced by CMSSearchSettings::Validate().

GetMaxproductions()

CMSSearchSettings_Base::TMaxproductions CMSSearchSettings_Base::GetMaxproductions ( void  ) const

inline

Get the Maxproductions member data.

Returns

Copy of the member data.

Definition at line 3664 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Maxproductions.

Referenced by CMSSearchSettings::Validate().

GetMincharge()

CMSChargeHandle_Base::TMincharge CMSChargeHandle_Base::GetMincharge ( void  ) const

inline

Get the Mincharge member data.

Returns

Copy of the member data.

Definition at line 632 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_Mincharge.

Referenced by CMSPeak::SetComputedCharge(), and CMSSearchSettings::Validate().

GetMinhit()

CMSSearchSettings_Base::TMinhit CMSSearchSettings_Base::GetMinhit ( void  ) const

inline

Get the Minhit member data.

Returns

Copy of the member data.

Definition at line 3247 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Minhit.

Referenced by CMSPeak::ReadAndProcess(), and CMSSearchSettings::Validate().

GetMinnoenzyme()

CMSSearchSettings_Base::TMinnoenzyme CMSSearchSettings_Base::GetMinnoenzyme ( void  ) const

inline

Get the Minnoenzyme member data.

Returns

Copy of the member data.

Definition at line 3714 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Minnoenzyme.

Referenced by CSearch< LEGACY, NHITS >::Search(), and CMSSearchSettings::Validate().

GetMinspectra()

CMSSearchSettings_Base::TMinspectra CMSSearchSettings_Base::GetMinspectra ( void  ) const

inline

Get the Minspectra member data.

Returns

Copy of the member data.

Definition at line 3297 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Minspectra.

Referenced by CMSPeak::ReadAndProcess(), and CMSSearchSettings::Validate().

GetMissedcleave()

CMSSearchSettings_Base::TMissedcleave CMSSearchSettings_Base::GetMissedcleave ( void  ) const

inline

Get the Missedcleave member data.

Returns

Copy of the member data.

Definition at line 3050 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetMissedcleave(), CMSSearchSettings_Base::m_Missedcleave, and CSerialObject::ThrowUnassigned().

Referenced by CMSSearchSettings::Validate().

GetMissingisotope()

CMSIonAnnot_Base::TMissingisotope CMSIonAnnot_Base::GetMissingisotope ( void  ) const

inline

Get the Missingisotope member data.

Returns

Copy of the member data.

Definition at line 351 of file MSIonAnnot_.hpp.

References CMSIonAnnot_Base::CanGetMissingisotope(), CMSIonAnnot_Base::m_Missingisotope, and CSerialObject::ThrowUnassigned().

GetMod()

CMSModSpec_Base::TMod CMSModSpec_Base::GetMod ( void  ) const

inline

Get the Mod member data.

Returns

Copy of the member data.

Definition at line 551 of file MSModSpec_.hpp.

References CMSModSpec_Base::CanGetMod(), CMSModSpec_Base::m_Mod, and CSerialObject::ThrowUnassigned().

GetMods()

const CMSHits_Base::TMods & CMSHits_Base::GetMods ( void  ) const

inline

Get the Mods member data.

Returns

Reference to the member data.

Definition at line 1019 of file MSHits_.hpp.

References CMSHits_Base::m_Mods.

Referenced by CMSHits::MakeModString(), and CMSHits::MakePepString().

GetModset()

const CMSRequest_Base::TModset & CMSRequest_Base::GetModset ( void  ) const

inline

Get the Modset member data.

Returns

Reference to the member data.

Definition at line 472 of file MSRequest_.hpp.

References CMSRequest_Base::CanGetModset(), CMSRequest_Base::m_Modset, and CSerialObject::ThrowUnassigned().

GetModtype()

CMSModHit_Base::TModtype CMSModHit_Base::GetModtype ( void  ) const

inline

Get the Modtype member data.

Returns

Copy of the member data.

Definition at line 267 of file MSModHit_.hpp.

References CMSModHit_Base::CanGetModtype(), CMSModHit_Base::m_Modtype, and CSerialObject::ThrowUnassigned().

GetMonomass() [1/2]

CMSMassSet_Base::TMonomass CMSMassSet_Base::GetMonomass ( void  ) const

inline

Get the Monomass member data.

Returns

Copy of the member data.

Definition at line 254 of file MSMassSet_.hpp.

References CMSMassSet_Base::CanGetMonomass(), CMSMassSet_Base::m_Monomass, and CSerialObject::ThrowUnassigned().

GetMonomass() [2/2]

CMSModSpec_Base::TMonomass CMSModSpec_Base::GetMonomass ( void  ) const

inline

Get the Monomass member data.

Returns

Copy of the member data.

Definition at line 692 of file MSModSpec_.hpp.

References CMSModSpec_Base::CanGetMonomass(), CMSModSpec_Base::m_Monomass, and CSerialObject::ThrowUnassigned().

GetMoreion()

const CMSMZHit_Base::TMoreion & CMSMZHit_Base::GetMoreion ( void  ) const

inline

Get the Moreion member data.

Returns

Reference to the member data.

Definition at line 658 of file MSMZHit_.hpp.

References CMSMZHit_Base::CanGetMoreion(), CMSMZHit_Base::m_Moreion, and CSerialObject::ThrowUnassigned().

GetMoresettings()

const CMSRequest_Base::TMoresettings & CMSRequest_Base::GetMoresettings ( void  ) const

inline

Get the Moresettings member data.

Returns

Reference to the member data.

Definition at line 451 of file MSRequest_.hpp.

References CMSRequest_Base::CanGetMoresettings(), CMSRequest_Base::m_Moresettings, and CSerialObject::ThrowUnassigned().

Referenced by CMSRequest::GetSettingsById().

GetMsmsppm()

CMSSearchSettings_Base::TMsmsppm CMSSearchSettings_Base::GetMsmsppm ( void  ) const

inline

Get the Msmsppm member data.

Returns

Copy of the member data.

Definition at line 4467 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetMsmsppm(), CMSSearchSettings_Base::m_Msmsppm, and CSerialObject::ThrowUnassigned().

GetMsmstol()

CMSSearchSettings_Base::TMsmstol CMSSearchSettings_Base::GetMsmstol ( void  ) const

inline

Get the Msmstol member data.

Returns

Copy of the member data.

Definition at line 2483 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetMsmstol(), CMSSearchSettings_Base::m_Msmstol, and CSerialObject::ThrowUnassigned().

Referenced by CMSPeak::Read(), and CMSSearchSettings::Validate().

GetMz() [1/2]

CMSMZHit_Base::TMz CMSMZHit_Base::GetMz ( void  ) const

inline

Get the Mz member data.

Returns

Copy of the member data.

Definition at line 571 of file MSMZHit_.hpp.

References CMSMZHit_Base::CanGetMz(), CMSMZHit_Base::m_Mz, and CSerialObject::ThrowUnassigned().

GetMz() [2/2]

const CMSSpectrum_Base::TMz & CMSSpectrum_Base::GetMz ( void  ) const

inline

Get the Mz member data.

Returns

Reference to the member data.

Definition at line 554 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_Mz.

Referenced by CMSPeak::Read().

GetMzhits()

const CMSHits_Base::TMzhits & CMSHits_Base::GetMzhits ( void  ) const

inline

Get the Mzhits member data.

Returns

Reference to the member data.

Definition at line 900 of file MSHits_.hpp.

References CMSHits_Base::m_Mzhits.

GetN15mass() [1/2]

CMSMassSet_Base::TN15mass CMSMassSet_Base::GetN15mass ( void  ) const

inline

Get the N15mass member data.

Returns

Copy of the member data.

Definition at line 348 of file MSMassSet_.hpp.

References CMSMassSet_Base::CanGetN15mass(), CMSMassSet_Base::m_N15mass, and CSerialObject::ThrowUnassigned().

GetN15mass() [2/2]

CMSModSpec_Base::TN15mass CMSModSpec_Base::GetN15mass ( void  ) const

inline

Get the N15mass member data.

Returns

Copy of the member data.

Definition at line 786 of file MSModSpec_.hpp.

References CMSModSpec_Base::CanGetN15mass(), CMSModSpec_Base::m_N15mass, and CSerialObject::ThrowUnassigned().

GetName() [1/3]

const CMSModSpec_Base::TName & CMSModSpec_Base::GetName ( void  ) const

inline

Get the Name member data.

Returns

Reference to the member data.

Definition at line 638 of file MSModSpec_.hpp.

References CMSModSpec_Base::CanGetName(), CMSModSpec_Base::m_Name, and CSerialObject::ThrowUnassigned().

GetName() [2/3]

const CMSScoreSet_Base::TName & CMSScoreSet_Base::GetName ( void  ) const

inline

Get the Name member data.

Returns

Reference to the member data.

Definition at line 212 of file MSScoreSet_.hpp.

References CMSScoreSet_Base::CanGetName(), CMSScoreSet_Base::m_Name, and CSerialObject::ThrowUnassigned().

GetName() [3/3]

const CNameValue_Base::TName & CNameValue_Base::GetName ( void  ) const

inline

Get the Name member data.

Returns

Reference to the member data.

Definition at line 213 of file NameValue_.hpp.

References CNameValue_Base::CanGetName(), CNameValue_Base::m_Name, and CSerialObject::ThrowUnassigned().

GetNamevalue() [1/2]

const CMSHitSet_Base::TNamevalue & CMSHitSet_Base::GetNamevalue ( void  ) const

inline

Get the Namevalue member data.

Returns

Reference to the member data.

Definition at line 553 of file MSHitSet_.hpp.

References CMSHitSet_Base::m_Namevalue.

GetNamevalue() [2/2]

const CMSSpectrum_Base::TNamevalue & CMSSpectrum_Base::GetNamevalue ( void  ) const

inline

Get the Namevalue member data.

Returns

Reference to the member data.

Definition at line 676 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_Namevalue.

GetNegative()

CMSChargeHandle_Base::TNegative CMSChargeHandle_Base::GetNegative ( void  ) const

inline

Get the Negative member data.

Returns

Copy of the member data.

Definition at line 923 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_Negative.

Referenced by CLadder::CreateLadder(), CMSPeak::CullChargeAndWhich(), and CMSSearchSettings::Validate().

GetNeutralloss() [1/2]

CMSIon_Base::TNeutralloss CMSIon_Base::GetNeutralloss ( void  ) const

inline

Get the Neutralloss member data.

Returns

Copy of the member data.

Definition at line 309 of file MSIon_.hpp.

References CMSIon_Base::CanGetNeutralloss(), CMSIon_Base::m_Neutralloss, and CSerialObject::ThrowUnassigned().

GetNeutralloss() [2/2]

const CMSModSpec_Base::TNeutralloss & CMSModSpec_Base::GetNeutralloss ( void  ) const

inline

Get the Neutralloss member data.

Returns

Reference to the member data.

Definition at line 851 of file MSModSpec_.hpp.

References CMSModSpec_Base::CanGetNeutralloss(), CMSModSpec_Base::m_Neutralloss, and CSerialObject::ThrowUnassigned().

GetNmethionine()

CMSSearchSettings_Base::TNmethionine CMSSearchSettings_Base::GetNmethionine ( void  ) const

inline

Get the Nmethionine member data.

Returns

Copy of the member data.

Definition at line 4114 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetNmethionine(), CMSSearchSettings_Base::m_Nmethionine, and CSerialObject::ThrowUnassigned().

Referenced by CSearch< LEGACY, NHITS >::Search().

GetNocorrelationscore()

CMSSearchSettings_Base::TNocorrelationscore CMSSearchSettings_Base::GetNocorrelationscore ( void  ) const

inline

Get the Nocorrelationscore member data.

Returns

Copy of the member data.

Definition at line 4020 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetNocorrelationscore(), CMSSearchSettings_Base::m_Nocorrelationscore, and CSerialObject::ThrowUnassigned().

Referenced by CMSSearchSettings::Validate().

GetNoprolineions()

const CMSSearchSettings_Base::TNoprolineions & CMSSearchSettings_Base::GetNoprolineions ( void  ) const

inline

Get the Noprolineions member data.

Returns

Reference to the member data.

Definition at line 4269 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Noprolineions.

Referenced by CMSSearchSettings::Validate().

GetNumber() [1/3]

CMSHitSet_Base::TNumber CMSHitSet_Base::GetNumber ( void  ) const

inline

Get the Number member data.

Returns

Copy of the member data.

Definition at line 416 of file MSHitSet_.hpp.

References CMSHitSet_Base::CanGetNumber(), CMSHitSet_Base::m_Number, and CSerialObject::ThrowUnassigned().

GetNumber() [2/3]

CMSMZHit_Base::TNumber CMSMZHit_Base::GetNumber ( void  ) const

inline

Get the Number member data.

Returns

Copy of the member data.

Definition at line 524 of file MSMZHit_.hpp.

References CMSMZHit_Base::CanGetNumber(), CMSMZHit_Base::m_Number, and CSerialObject::ThrowUnassigned().

GetNumber() [3/3]

CMSSpectrum_Base::TNumber CMSSpectrum_Base::GetNumber ( void  ) const

inline

Get the Number member data.

Returns

Copy of the member data.

Definition at line 442 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::CanGetNumber(), CMSSpectrum_Base::m_Number, and CSerialObject::ThrowUnassigned().

Referenced by CMSPeak::ReadAndProcess(), and CMSPeak::SetComputedCharge().

GetNumisotopes()

CMSSearchSettings_Base::TNumisotopes CMSSearchSettings_Base::GetNumisotopes ( void  ) const

inline

Get the Numisotopes member data.

Returns

Copy of the member data.

Definition at line 4373 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetNumisotopes(), CMSSearchSettings_Base::m_Numisotopes, and CSerialObject::ThrowUnassigned().

Referenced by CMSSearchSettings::Validate().

GetOid() [1/3]

CMSBioseq_Base::TOid CMSBioseq_Base::GetOid ( void  ) const

inline

Get the Oid member data.

Returns

Copy of the member data.

Definition at line 219 of file MSBioseq_.hpp.

References CMSBioseq_Base::CanGetOid(), CMSBioseq_Base::m_Oid, and CSerialObject::ThrowUnassigned().

GetOid() [2/3]

CMSHits_Base::TOid CMSHits_Base::GetOid ( void  ) const

inline

Get the Oid member data.

Returns

Copy of the member data.

Definition at line 1239 of file MSHits_.hpp.

References CMSHits_Base::CanGetOid(), CMSHits_Base::m_Oid, and CSerialObject::ThrowUnassigned().

GetOid() [3/3]

CMSPepHit_Base::TOid CMSPepHit_Base::GetOid ( void  ) const

inline

Get the Oid member data.

Returns

Copy of the member data.

Definition at line 835 of file MSPepHit_.hpp.

References CMSPepHit_Base::CanGetOid(), CMSPepHit_Base::m_Oid, and CSerialObject::ThrowUnassigned().

GetOthersettings()

const CMSSearchSettings_Base::TOthersettings & CMSSearchSettings_Base::GetOthersettings ( void  ) const

inline

Get the Othersettings member data.

Returns

Reference to the member data.

Definition at line 4341 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Othersettings.

GetOutfile()

const CMSOutFile_Base::TOutfile & CMSOutFile_Base::GetOutfile ( void  ) const

inline

Get the Outfile member data.

Returns

Reference to the member data.

Definition at line 255 of file MSOutFile_.hpp.

References CMSOutFile_Base::CanGetOutfile(), CMSOutFile_Base::m_Outfile, and CSerialObject::ThrowUnassigned().

GetOutfiles()

const CMSSearchSettings_Base::TOutfiles & CMSSearchSettings_Base::GetOutfiles ( void  ) const

inline

Get the Outfiles member data.

Returns

Reference to the member data.

Definition at line 3988 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Outfiles.

Referenced by COMSSA::Run().

GetOutfiletype()

CMSOutFile_Base::TOutfiletype CMSOutFile_Base::GetOutfiletype ( void  ) const

inline

Get the Outfiletype member data.

Returns

Copy of the member data.

Definition at line 309 of file MSOutFile_.hpp.

References CMSOutFile_Base::CanGetOutfiletype(), CMSOutFile_Base::m_Outfiletype, and CSerialObject::ThrowUnassigned().

GetParent()

const CMSImmonium_Base::TParent & CMSImmonium_Base::GetParent ( void  ) const

inline

Get the Parent member data.

Returns

Reference to the member data.

Definition at line 215 of file MSImmonium_.hpp.

References CMSImmonium_Base::CanGetParent(), CMSImmonium_Base::m_Parent, and CSerialObject::ThrowUnassigned().

GetPephits()

const CMSHits_Base::TPephits & CMSHits_Base::GetPephits ( void  ) const

inline

Get the Pephits member data.

Returns

Reference to the member data.

Definition at line 875 of file MSHits_.hpp.

References CMSHits_Base::m_Pephits.

GetPepppm()

CMSSearchSettings_Base::TPepppm CMSSearchSettings_Base::GetPepppm ( void  ) const

inline

Get the Pepppm member data.

Returns

Copy of the member data.

Definition at line 4420 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetPepppm(), CMSSearchSettings_Base::m_Pepppm, and CSerialObject::ThrowUnassigned().

GetPepstart() [1/2]

const CMSHits_Base::TPepstart & CMSHits_Base::GetPepstart ( void  ) const

inline

Get the Pepstart member data.

Returns

Reference to the member data.

Definition at line 1044 of file MSHits_.hpp.

References CMSHits_Base::CanGetPepstart(), CMSHits_Base::m_Pepstart, and CSerialObject::ThrowUnassigned().

GetPepstart() [2/2]

const CMSPepHit_Base::TPepstart & CMSPepHit_Base::GetPepstart ( void  ) const

inline

Get the Pepstart member data.

Returns

Reference to the member data.

Definition at line 922 of file MSPepHit_.hpp.

References CMSPepHit_Base::CanGetPepstart(), CMSPepHit_Base::m_Pepstart, and CSerialObject::ThrowUnassigned().

GetPepstop() [1/2]

const CMSHits_Base::TPepstop & CMSHits_Base::GetPepstop ( void  ) const

inline

Get the Pepstop member data.

Returns

Reference to the member data.

Definition at line 1091 of file MSHits_.hpp.

References CMSHits_Base::CanGetPepstop(), CMSHits_Base::m_Pepstop, and CSerialObject::ThrowUnassigned().

GetPepstop() [2/2]

const CMSPepHit_Base::TPepstop & CMSPepHit_Base::GetPepstop ( void  ) const

inline

Get the Pepstop member data.

Returns

Reference to the member data.

Definition at line 969 of file MSPepHit_.hpp.

References CMSPepHit_Base::CanGetPepstop(), CMSPepHit_Base::m_Pepstop, and CSerialObject::ThrowUnassigned().

GetPepstring()

const CMSHits_Base::TPepstring & CMSHits_Base::GetPepstring ( void  ) const

inline

Get the Pepstring member data.

Returns

Reference to the member data.

Definition at line 925 of file MSHits_.hpp.

References CMSHits_Base::CanGetPepstring(), CMSHits_Base::m_Pepstring, and CSerialObject::ThrowUnassigned().

Referenced by CMSHits::MakePepString().

GetPeptol()

CMSSearchSettings_Base::TPeptol CMSSearchSettings_Base::GetPeptol ( void  ) const

inline

Get the Peptol member data.

Returns

Copy of the member data.

Definition at line 2436 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetPeptol(), CMSSearchSettings_Base::m_Peptol, and CSerialObject::ThrowUnassigned().

Referenced by CMSPeak::Read(), and CMSSearchSettings::Validate().

GetPlusone()

CMSChargeHandle_Base::TPlusone CMSChargeHandle_Base::GetPlusone ( void  ) const

inline

Get the Plusone member data.

Returns

Copy of the member data.

Definition at line 776 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::CanGetPlusone(), CMSChargeHandle_Base::m_Plusone, and CSerialObject::ThrowUnassigned().

Referenced by CMSPeak::SetComputedCharge(), and CMSSearchSettings::Validate().

GetPrecursorcull()

CMSSearchSettings_Base::TPrecursorcull CMSSearchSettings_Base::GetPrecursorcull ( void  ) const

inline

Get the Precursorcull member data.

Returns

Copy of the member data.

Definition at line 3923 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetPrecursorcull(), CMSSearchSettings_Base::m_Precursorcull, and CSerialObject::ThrowUnassigned().

Referenced by CMSPeak::CullChargeAndWhich(), and CMSSearchSettings::Validate().

GetPrecursormz()

CMSSpectrum_Base::TPrecursormz CMSSpectrum_Base::GetPrecursormz ( void  ) const

inline

Get the Precursormz member data.

Returns

Copy of the member data.

Definition at line 514 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::CanGetPrecursormz(), CMSSpectrum_Base::m_Precursormz, and CSerialObject::ThrowUnassigned().

Referenced by CMSPeak::Read().

GetPrecursorsearchtype()

CMSSearchSettings_Base::TPrecursorsearchtype CMSSearchSettings_Base::GetPrecursorsearchtype ( void  ) const

inline

Get the Precursorsearchtype member data.

Returns

Copy of the member data.

Definition at line 2317 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetPrecursorsearchtype(), CMSSearchSettings_Base::m_Precursorsearchtype, and CSerialObject::ThrowUnassigned().

Referenced by CMSSearchSettings::Validate().

GetPresearch()

CMSLibrarySettings_Base::TPresearch CMSLibrarySettings_Base::GetPresearch ( void  ) const

inline

Get the Presearch member data.

Returns

Copy of the member data.

Definition at line 363 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::CanGetPresearch(), CMSLibrarySettings_Base::m_Presearch, and CSerialObject::ThrowUnassigned().

GetProbfollowingion()

CMSSearchSettings_Base::TProbfollowingion CMSSearchSettings_Base::GetProbfollowingion ( void  ) const

inline

Get the Probfollowingion member data.

Returns

Copy of the member data.

Definition at line 4067 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetProbfollowingion(), CMSSearchSettings_Base::m_Probfollowingion, and CSerialObject::ThrowUnassigned().

Referenced by CMSSearchSettings::Validate().

GetProdlesspre()

CMSChargeHandle_Base::TProdlesspre CMSChargeHandle_Base::GetProdlesspre ( void  ) const

inline

Get the Prodlesspre member data.

Returns

Copy of the member data.

Definition at line 870 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::CanGetProdlesspre(), CMSChargeHandle_Base::m_Prodlesspre, and CSerialObject::ThrowUnassigned().

GetProduct()

const CMSImmonium_Base::TProduct & CMSImmonium_Base::GetProduct ( void  ) const

inline

Get the Product member data.

Returns

Reference to the member data.

Definition at line 262 of file MSImmonium_.hpp.

References CMSImmonium_Base::CanGetProduct(), CMSImmonium_Base::m_Product, and CSerialObject::ThrowUnassigned().

GetProductsearchtype()

CMSSearchSettings_Base::TProductsearchtype CMSSearchSettings_Base::GetProductsearchtype ( void  ) const

inline

Get the Productsearchtype member data.

Returns

Copy of the member data.

Definition at line 2364 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetProductsearchtype(), CMSSearchSettings_Base::m_Productsearchtype, and CSerialObject::ThrowUnassigned().

Referenced by CLadder::CreateLadder(), and CMSSearchSettings::Validate().

GetProtlength() [1/2]

CMSHits_Base::TProtlength CMSHits_Base::GetProtlength ( void  ) const

inline

Get the Protlength member data.

Returns

Copy of the member data.

Definition at line 1145 of file MSHits_.hpp.

References CMSHits_Base::CanGetProtlength(), CMSHits_Base::m_Protlength, and CSerialObject::ThrowUnassigned().

GetProtlength() [2/2]

CMSPepHit_Base::TProtlength CMSPepHit_Base::GetProtlength ( void  ) const

inline

Get the Protlength member data.

Returns

Copy of the member data.

Definition at line 788 of file MSPepHit_.hpp.

References CMSPepHit_Base::CanGetProtlength(), CMSPepHit_Base::m_Protlength, and CSerialObject::ThrowUnassigned().

GetPseudocount()

CMSSearchSettings_Base::TPseudocount CMSSearchSettings_Base::GetPseudocount ( void  ) const

inline

Get the Pseudocount member data.

Returns

Copy of the member data.

Definition at line 3514 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Pseudocount.

Referenced by CMSSearchSettings::Validate().

GetPsi_ms()

const CMSModSpec_Base::TPsi_ms & CMSModSpec_Base::GetPsi_ms ( void  ) const

inline

Get the Psi_ms member data.

Returns

Reference to the member data.

Definition at line 919 of file MSModSpec_.hpp.

References CMSModSpec_Base::CanGetPsi_ms(), CMSModSpec_Base::m_Psi_ms, and CSerialObject::ThrowUnassigned().

GetPvalue()

CMSHits_Base::TPvalue CMSHits_Base::GetPvalue ( void  ) const

inline

Get the Pvalue member data.

Returns

Copy of the member data.

Definition at line 788 of file MSHits_.hpp.

References CMSHits_Base::CanGetPvalue(), CMSHits_Base::m_Pvalue, and CSerialObject::ThrowUnassigned().

GetQtofscore()

CMSLibrarySettings_Base::TQtofscore CMSLibrarySettings_Base::GetQtofscore ( void  ) const

inline

Get the Qtofscore member data.

Returns

Copy of the member data.

Definition at line 504 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::CanGetQtofscore(), CMSLibrarySettings_Base::m_Qtofscore, and CSerialObject::ThrowUnassigned().

GetReplacethresh()

CMSIterativeSettings_Base::TReplacethresh CMSIterativeSettings_Base::GetReplacethresh ( void  ) const

inline

Get the Replacethresh member data.

Returns

Copy of the member data.

Definition at line 351 of file MSIterativeSettings_.hpp.

References CMSIterativeSettings_Base::CanGetReplacethresh(), CMSIterativeSettings_Base::m_Replacethresh, and CSerialObject::ThrowUnassigned().

Referenced by CMSSearchSettings::Validate().

GetReportedhitcount()

CMSSearchSettings_Base::TReportedhitcount CMSSearchSettings_Base::GetReportedhitcount ( void  ) const

inline

Get the Reportedhitcount member data.

Returns

Copy of the member data.

Definition at line 4514 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetReportedhitcount(), CMSSearchSettings_Base::m_Reportedhitcount, and CSerialObject::ThrowUnassigned().

Referenced by CMSSearchSettings::Validate().

GetRequest()

const CMSSearch_Base::TRequest & CMSSearch_Base::GetRequest ( void  ) const

inline

Get the Request member data.

Returns

Reference to the member data.

Definition at line 204 of file MSSearch_.hpp.

References CMSSearch_Base::m_Request.

Referenced by COMSSASearch::AppendSearch(), COMSSASearch::CheckLibraryNameAndSize(), CPepXML::ConvertFromOMSSA(), CPepXML::ConvertModifications(), COMSSASearch::FindMinMaxSearchSettingId(), COMSSASearch::FindMinMaxSpectrumNumber(), and COMSSASearch::RenumberSearchSettingId().

GetResearchthresh()

CMSIterativeSettings_Base::TResearchthresh CMSIterativeSettings_Base::GetResearchthresh ( void  ) const

inline

Get the Researchthresh member data.

Returns

Copy of the member data.

Definition at line 257 of file MSIterativeSettings_.hpp.

References CMSIterativeSettings_Base::CanGetResearchthresh(), CMSIterativeSettings_Base::m_Researchthresh, and CSerialObject::ThrowUnassigned().

Referenced by CMSSearchSettings::Validate().

GetResidues()

const CMSModSpec_Base::TResidues & CMSModSpec_Base::GetResidues ( void  ) const

inline

Get the Residues member data.

Returns

Reference to the member data.

Definition at line 826 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_Residues.

GetResponse()

const CMSSearch_Base::TResponse & CMSSearch_Base::GetResponse ( void  ) const

inline

Get the Response member data.

Returns

Reference to the member data.

Definition at line 229 of file MSSearch_.hpp.

References CMSSearch_Base::m_Response.

Referenced by COMSSASearch::AppendSearch(), COMSSASearch::CheckLibraryNameAndSize(), and CPepXML::ConvertFromOMSSA().

GetReversed()

CMSPepHit_Base::TReversed CMSPepHit_Base::GetReversed ( void  ) const

inline

Get the Reversed member data.

Returns

Copy of the member data.

Definition at line 882 of file MSPepHit_.hpp.

References CMSPepHit_Base::CanGetReversed(), CMSPepHit_Base::m_Reversed, and CSerialObject::ThrowUnassigned().

GetReversesearch()

CMSSearchSettings_Base::TReversesearch CMSSearchSettings_Base::GetReversesearch ( void  ) const

inline

Get the Reversesearch member data.

Returns

Copy of the member data.

Definition at line 4301 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetReversesearch(), CMSSearchSettings_Base::m_Reversesearch, and CSerialObject::ThrowUnassigned().

GetRid() [1/2]

const CMSRequest_Base::TRid & CMSRequest_Base::GetRid ( void  ) const

inline

Get the Rid member data.

Returns

Reference to the member data.

Definition at line 404 of file MSRequest_.hpp.

References CMSRequest_Base::CanGetRid(), CMSRequest_Base::m_Rid, and CSerialObject::ThrowUnassigned().

GetRid() [2/2]

const CMSResponse_Base::TRid & CMSResponse_Base::GetRid ( void  ) const

inline

Get the Rid member data.

Returns

Reference to the member data.

Definition at line 541 of file MSResponse_.hpp.

References CMSResponse_Base::CanGetRid(), CMSResponse_Base::m_Rid, and CSerialObject::ThrowUnassigned().

GetScale() [1/2]

CMSResponse_Base::TScale CMSResponse_Base::GetScale ( void  ) const

inline

Get the Scale member data.

Returns

Copy of the member data.

Definition at line 504 of file MSResponse_.hpp.

References CMSResponse_Base::m_Scale.

Referenced by CMSResponse::PrintCSV().

GetScale() [2/2]

CMSSearchSettings_Base::TScale CMSSearchSettings_Base::GetScale ( void  ) const

inline

Get the Scale member data.

Returns

Copy of the member data.

Definition at line 3347 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Scale.

Referenced by CMSSearchSettings::Validate().

GetScores()

const CMSHits_Base::TScores & CMSHits_Base::GetScores ( void  ) const

inline

Get the Scores member data.

Returns

Reference to the member data.

Definition at line 1279 of file MSHits_.hpp.

References CMSHits_Base::m_Scores.

GetSearchb1()

CMSSearchSettings_Base::TSearchb1 CMSSearchSettings_Base::GetSearchb1 ( void  ) const

inline

Get the Searchb1 member data.

Returns

Copy of the member data.

Definition at line 3564 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Searchb1.

Referenced by CLadder::CreateLadder(), and CMSSearchSettings::Validate().

GetSearchctermproduct()

CMSSearchSettings_Base::TSearchctermproduct CMSSearchSettings_Base::GetSearchctermproduct ( void  ) const

inline

Get the Searchctermproduct member data.

Returns

Copy of the member data.

Definition at line 3614 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Searchctermproduct.

Referenced by CLadder::CreateLadder(), and CMSSearchSettings::Validate().

GetSeq()

const CMSBioseq_Base::TSeq & CMSBioseq_Base::GetSeq ( void  ) const

inline

Get the Seq member data.

Returns

Reference to the member data.

Definition at line 259 of file MSBioseq_.hpp.

References CMSBioseq_Base::m_Seq, and CMSBioseq_Base::ResetSeq().

GetSettingid() [1/2]

CMSHitSet_Base::TSettingid CMSHitSet_Base::GetSettingid ( void  ) const

inline

Get the Settingid member data.

Returns

Copy of the member data.

Definition at line 585 of file MSHitSet_.hpp.

References CMSHitSet_Base::CanGetSettingid(), CMSHitSet_Base::m_Settingid, and CSerialObject::ThrowUnassigned().

GetSettingid() [2/2]

CMSSearchSettings_Base::TSettingid CMSSearchSettings_Base::GetSettingid ( void  ) const

inline

Get the Settingid member data.

Returns

Copy of the member data.

Definition at line 3855 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetSettingid(), CMSSearchSettings_Base::m_Settingid, and CSerialObject::ThrowUnassigned().

Referenced by COMSSASearch::FindMinMaxForOneSetting().

GetSettings()

const CMSRequest_Base::TSettings & CMSRequest_Base::GetSettings ( void  ) const

inline

Get the Settings member data.

Returns

Reference to the member data.

Definition at line 374 of file MSRequest_.hpp.

References CMSRequest_Base::m_Settings, and CMSRequest_Base::ResetSettings().

Referenced by CMSRequest::GetSettingsById().

GetSinglenum()

CMSSearchSettings_Base::TSinglenum CMSSearchSettings_Base::GetSinglenum ( void  ) const

inline

Get the Singlenum member data.

Returns

Copy of the member data.

Definition at line 2859 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetSinglenum(), CMSSearchSettings_Base::m_Singlenum, and CSerialObject::ThrowUnassigned().

Referenced by CMSPeak::SmartCull(), and CMSSearchSettings::Validate().

GetSinglewin()

CMSSearchSettings_Base::TSinglewin CMSSearchSettings_Base::GetSinglewin ( void  ) const

inline

Get the Singlewin member data.

Returns

Copy of the member data.

Definition at line 2765 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetSinglewin(), CMSSearchSettings_Base::m_Singlewin, and CSerialObject::ThrowUnassigned().

Referenced by CMSPeak::SmartCull(), and CMSSearchSettings::Validate().

GetSite()

CMSModHit_Base::TSite CMSModHit_Base::GetSite ( void  ) const

inline

Get the Site member data.

Returns

Copy of the member data.

Definition at line 220 of file MSModHit_.hpp.

References CMSModHit_Base::CanGetSite(), CMSModHit_Base::m_Site, and CSerialObject::ThrowUnassigned().

GetSpectra()

const CMSRequest_Base::TSpectra & CMSRequest_Base::GetSpectra ( void  ) const

inline

Get the Spectra member data.

Returns

Reference to the member data.

Definition at line 344 of file MSRequest_.hpp.

References CMSRequest_Base::m_Spectra, and CMSRequest_Base::ResetSpectra().

GetStart()

CMSPepHit_Base::TStart CMSPepHit_Base::GetStart ( void  ) const

inline

Get the Start member data.

Returns

Copy of the member data.

Definition at line 553 of file MSPepHit_.hpp.

References CMSPepHit_Base::CanGetStart(), CMSPepHit_Base::m_Start, and CSerialObject::ThrowUnassigned().

GetStop()

CMSPepHit_Base::TStop CMSPepHit_Base::GetStop ( void  ) const

inline

Get the Stop member data.

Returns

Copy of the member data.

Definition at line 600 of file MSPepHit_.hpp.

References CMSPepHit_Base::CanGetStop(), CMSPepHit_Base::m_Stop, and CSerialObject::ThrowUnassigned().

GetSubsetthresh()

CMSIterativeSettings_Base::TSubsetthresh CMSIterativeSettings_Base::GetSubsetthresh ( void  ) const

inline

Get the Subsetthresh member data.

Returns

Copy of the member data.

Definition at line 304 of file MSIterativeSettings_.hpp.

References CMSIterativeSettings_Base::CanGetSubsetthresh(), CMSIterativeSettings_Base::m_Subsetthresh, and CSerialObject::ThrowUnassigned().

Referenced by CMSSearchSettings::Validate().

GetSuspect()

CMSIonAnnot_Base::TSuspect CMSIonAnnot_Base::GetSuspect ( void  ) const

inline

Get the Suspect member data.

Returns

Copy of the member data.

Definition at line 257 of file MSIonAnnot_.hpp.

References CMSIonAnnot_Base::CanGetSuspect(), CMSIonAnnot_Base::m_Suspect, and CSerialObject::ThrowUnassigned().

GetTaxids()

const CMSSearchSettings_Base::TTaxids & CMSSearchSettings_Base::GetTaxids ( void  ) const

inline

Get the Taxids member data.

Returns

Reference to the member data.

Definition at line 3434 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Taxids.

Referenced by CMSSearchSettings::Validate().

GetTheomass()

CMSHits_Base::TTheomass CMSHits_Base::GetTheomass ( void  ) const

inline

Get the Theomass member data.

Returns

Copy of the member data.

Definition at line 1192 of file MSHits_.hpp.

References CMSHits_Base::CanGetTheomass(), CMSHits_Base::m_Theomass, and CSerialObject::ThrowUnassigned().

GetTophitnum()

CMSSearchSettings_Base::TTophitnum CMSSearchSettings_Base::GetTophitnum ( void  ) const

inline

Get the Tophitnum member data.

Returns

Copy of the member data.

Definition at line 3194 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetTophitnum(), CMSSearchSettings_Base::m_Tophitnum, and CSerialObject::ThrowUnassigned().

Referenced by CMSPeak::CullAll(), and CMSSearchSettings::Validate().

GetType()

CMSModSpec_Base::TType CMSModSpec_Base::GetType ( void  ) const

inline

Get the Type member data.

Returns

Copy of the member data.

Definition at line 598 of file MSModSpec_.hpp.

References CMSModSpec_Base::CanGetType(), CMSModSpec_Base::m_Type, and CSerialObject::ThrowUnassigned().

GetUnimod()

CMSModSpec_Base::TUnimod CMSModSpec_Base::GetUnimod ( void  ) const

inline

Get the Unimod member data.

Returns

Copy of the member data.

Definition at line 879 of file MSModSpec_.hpp.

References CMSModSpec_Base::CanGetUnimod(), CMSModSpec_Base::m_Unimod, and CSerialObject::ThrowUnassigned().

GetUseomssascore()

CMSLibrarySettings_Base::TUseomssascore CMSLibrarySettings_Base::GetUseomssascore ( void  ) const

inline

Get the Useomssascore member data.

Returns

Copy of the member data.

Definition at line 410 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::CanGetUseomssascore(), CMSLibrarySettings_Base::m_Useomssascore, and CSerialObject::ThrowUnassigned().

GetUserannotation()

CMSHitSet_Base::TUserannotation CMSHitSet_Base::GetUserannotation ( void  ) const

inline

Get the Userannotation member data.

Returns

Copy of the member data.

Definition at line 632 of file MSHitSet_.hpp.

References CMSHitSet_Base::CanGetUserannotation(), CMSHitSet_Base::m_Userannotation, and CSerialObject::ThrowUnassigned().

GetUsereplicatescore()

CMSLibrarySettings_Base::TUsereplicatescore CMSLibrarySettings_Base::GetUsereplicatescore ( void  ) const

inline

Get the Usereplicatescore member data.

Returns

Copy of the member data.

Definition at line 457 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::CanGetUsereplicatescore(), CMSLibrarySettings_Base::m_Usereplicatescore, and CSerialObject::ThrowUnassigned().

GetUsermods()

const CMSSearchSettings_Base::TUsermods & CMSSearchSettings_Base::GetUsermods ( void  ) const

inline

Get the Usermods member data.

Returns

Reference to the member data.

Definition at line 3480 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetUsermods(), CMSSearchSettings_Base::m_Usermods, and CSerialObject::ThrowUnassigned().

GetValue() [1/2]

CMSScoreSet_Base::TValue CMSScoreSet_Base::GetValue ( void  ) const

inline

Get the Value member data.

Returns

Copy of the member data.

Definition at line 266 of file MSScoreSet_.hpp.

References CMSScoreSet_Base::CanGetValue(), CMSScoreSet_Base::m_Value, and CSerialObject::ThrowUnassigned().

GetValue() [2/2]

const CNameValue_Base::TValue & CNameValue_Base::GetValue ( void  ) const

inline

Get the Value member data.

Returns

Reference to the member data.

Definition at line 260 of file NameValue_.hpp.

References CNameValue_Base::CanGetValue(), CNameValue_Base::m_Value, and CSerialObject::ThrowUnassigned().

GetVariable()

const CMSSearchSettings_Base::TVariable & CMSSearchSettings_Base::GetVariable ( void  ) const

inline

Get the Variable member data.

Returns

Reference to the member data.

Definition at line 2971 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Variable.

Referenced by CMSSearchSettings::Validate().

GetVersion()

const CMSResponse_Base::TVersion & CMSResponse_Base::GetVersion ( void  ) const

inline

Get the Version member data.

Returns

Reference to the member data.

Definition at line 635 of file MSResponse_.hpp.

References CMSResponse_Base::CanGetVersion(), CMSResponse_Base::m_Version, and CSerialObject::ThrowUnassigned().

GetZdep()

CMSSearchSettings_Base::TZdep CMSSearchSettings_Base::GetZdep ( void  ) const

inline

Get the Zdep member data.

Returns

Copy of the member data.

Definition at line 2530 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::CanGetZdep(), CMSSearchSettings_Base::m_Zdep, and CSerialObject::ThrowUnassigned().

Referenced by CMSSearchSettings::Validate().

IsSet() [1/4]

bool CMSBioseqSet_Base::IsSet ( void  ) const

inline

Check if a value has been assigned to data member.

Data member is mandatory; its type is defined as 'typedef list< CRef< CMSBioseq > > Tdata'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 152 of file MSBioseqSet_.hpp.

References CMSBioseqSet_Base::m_set_State.

IsSet() [2/4]

bool CMSModSpecSet_Base::IsSet ( void  ) const

inline

Check if a value has been assigned to data member.

Data member is mandatory; its type is defined as 'typedef list< CRef< CMSModSpec > > Tdata'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 153 of file MSModSpecSet_.hpp.

References CMSModSpecSet_Base::m_set_State.

IsSet() [3/4]

bool CMSSearchSettingsSet_Base::IsSet ( void  ) const

inline

Check if a value has been assigned to data member.

Data member is mandatory; its type is defined as 'typedef list< CRef< CMSSearchSettings > > Tdata'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 152 of file MSSearchSettingsSet_.hpp.

References CMSSearchSettingsSet_Base::m_set_State.

IsSet() [4/4]

bool CMSSpectrumset_Base::IsSet ( void  ) const

inline

Check if a value has been assigned to data member.

Data member is mandatory; its type is defined as 'typedef list< CRef< CMSSpectrum > > Tdata'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 153 of file MSSpectrumset_.hpp.

References CMSSpectrumset_Base::m_set_State.

IsSetAbundance()

bool CMSSpectrum_Base::IsSetAbundance ( void  ) const

inline

scaled product abundance Check if a value has been assigned to Abundance data member.

Data member Abundance is mandatory; its type is defined as 'typedef vector< int > TAbundance'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 567 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_set_State.

IsSetAccession()

bool CMSPepHit_Base::IsSetAccession ( void  ) const

inline

sequence accession Check if a value has been assigned to Accession data member.

Data member Accession is optional; its type is defined as 'typedef string TAccession'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 675 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_set_State.

Referenced by CMSPepHit_Base::CanGetAccession(), and CMSPepHit_Base::SetAccession().

IsSetAnnotation()

bool CMSMZHit_Base::IsSetAnnotation ( void  ) const

inline

annotations on the ion Check if a value has been assigned to Annotation data member.

Data member Annotation is optional; its type is defined as 'typedef CMSIonAnnot TAnnotation'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 667 of file MSMZHit_.hpp.

References CMSMZHit_Base::m_Annotation.

Referenced by CMSMZHit_Base::CanGetAnnotation().

IsSetAutomassadjust()

bool CMSSearchSettings_Base::IsSetAutomassadjust ( void  ) const

inline

fraction allowable adjustment of product mass tolerance Check if a value has been assigned to Automassadjust data member.

Data member Automassadjust is optional; its type is defined as 'typedef double TAutomassadjust'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 4142 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetAutomassadjust(), and CMSSearchSettings_Base::SetAutomassadjust().

IsSetAveragemass() [1/2]

bool CMSMassSet_Base::IsSetAveragemass ( void  ) const

inline

Check if a value has been assigned to Averagemass data member.

Data member Averagemass is mandatory; its type is defined as 'typedef double TAveragemass'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 282 of file MSMassSet_.hpp.

References CMSMassSet_Base::m_set_State.

Referenced by CMSMassSet_Base::CanGetAveragemass(), and CMSMassSet_Base::SetAveragemass().

IsSetAveragemass() [2/2]

bool CMSModSpec_Base::IsSetAveragemass ( void  ) const

inline

average mass Check if a value has been assigned to Averagemass data member.

Data member Averagemass is mandatory; its type is defined as 'typedef double TAveragemass'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 720 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_set_State.

Referenced by CMSModSpec_Base::CanGetAveragemass(), and CMSModSpec_Base::SetAveragemass().

IsSetBioseqs()

bool CMSResponse_Base::IsSetBioseqs ( void  ) const

inline

sequences found in search Check if a value has been assigned to Bioseqs data member.

Data member Bioseqs is optional; its type is defined as 'typedef CMSBioseqSet TBioseqs'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 764 of file MSResponse_.hpp.

References CMSResponse_Base::m_Bioseqs.

Referenced by CMSResponse_Base::CanGetBioseqs().

IsSetCalccharge()

bool CMSChargeHandle_Base::IsSetCalccharge ( void  ) const

inline

how do we handle charges? Check if a value has been assigned to Calccharge data member.

Data member Calccharge is optional with default 2; its type is defined as 'typedef int TCalccharge'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 557 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_set_State.

Referenced by CMSChargeHandle_Base::SetCalccharge().

IsSetCalcplusone()

bool CMSChargeHandle_Base::IsSetCalcplusone ( void  ) const

inline

do we guess charge one? Check if a value has been assigned to Calcplusone data member.

Data member Calcplusone is optional with default 1; its type is defined as 'typedef int TCalcplusone'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 507 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_set_State.

Referenced by CMSChargeHandle_Base::SetCalcplusone().

IsSetCharge() [1/3]

bool CMSHits_Base::IsSetCharge ( void  ) const

inline

the charge state used in search.

-1 == not +1 Check if a value has been assigned to Charge data member.

Data member Charge is mandatory; its type is defined as 'typedef int TCharge'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 816 of file MSHits_.hpp.

References CMSHits_Base::m_set_State.

Referenced by CMSHits_Base::CanGetCharge(), and CMSHits_Base::SetCharge().

IsSetCharge() [2/3]

bool CMSMZHit_Base::IsSetCharge ( void  ) const

inline

ion charge Check if a value has been assigned to Charge data member.

Data member Charge is mandatory; its type is defined as 'typedef int TCharge'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 458 of file MSMZHit_.hpp.

References CMSMZHit_Base::m_set_State.

Referenced by CMSMZHit_Base::CanGetCharge(), and CMSMZHit_Base::SetCharge().

IsSetCharge() [3/3]

bool CMSSpectrum_Base::IsSetCharge ( void  ) const

inline

may be more than one if unknown Check if a value has been assigned to Charge data member.

Data member Charge is mandatory; its type is defined as 'typedef list< int > TCharge'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 470 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_set_State.

IsSetChargehandling()

bool CMSSearchSettings_Base::IsSetChargehandling ( void  ) const

inline

how to deal with charges Check if a value has been assigned to Chargehandling data member.

Data member Chargehandling is optional; its type is defined as 'typedef CMSChargeHandle TChargehandling'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3447 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Chargehandling.

Referenced by CMSSearchSettings_Base::CanGetChargehandling(), and CMSSearchSettings::Validate().

IsSetConsidermult()

bool CMSChargeHandle_Base::IsSetConsidermult ( void  ) const

inline

at which precursor charge to consider +2 ions? Check if a value has been assigned to Considermult data member.

Data member Considermult is optional with default 3; its type is defined as 'typedef int TConsidermult'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 707 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_set_State.

Referenced by CMSChargeHandle_Base::SetConsidermult().

IsSetCuthi()

bool CMSSearchSettings_Base::IsSetCuthi ( void  ) const

inline

the end of the cutoff Check if a value has been assigned to Cuthi data member.

Data member Cuthi is mandatory; its type is defined as 'typedef double TCuthi'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2652 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetCuthi(), and CMSSearchSettings_Base::SetCuthi().

IsSetCutinc()

bool CMSSearchSettings_Base::IsSetCutinc ( void  ) const

inline

the increment of the cutoff Check if a value has been assigned to Cutinc data member.

Data member Cutinc is mandatory; its type is defined as 'typedef double TCutinc'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2699 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetCutinc(), and CMSSearchSettings_Base::SetCutinc().

IsSetCutlo()

bool CMSSearchSettings_Base::IsSetCutlo ( void  ) const

inline

the start of the cutoff, fraction of most intense peak Check if a value has been assigned to Cutlo data member.

Data member Cutlo is mandatory; its type is defined as 'typedef double TCutlo'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2605 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetCutlo(), and CMSSearchSettings_Base::SetCutlo().

IsSetCutoff()

bool CMSSearchSettings_Base::IsSetCutoff ( void  ) const

inline

evalue cutoff next 3 fields define intensity fraction below which peaks will be discard Check if a value has been assigned to Cutoff data member.

Data member Cutoff is mandatory; its type is defined as 'typedef double TCutoff'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2558 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetCutoff(), and CMSSearchSettings_Base::SetCutoff().

IsSetDb()

bool CMSSearchSettings_Base::IsSetDb ( void  ) const

inline

sequence set to search, e.g.

"nr" Check if a value has been assigned to Db data member.

Data member Db is mandatory; its type is defined as 'typedef string TDb'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3128 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetDb(), and CMSSearchSettings_Base::SetDb().

IsSetDbversion()

bool CMSResponse_Base::IsSetDbversion ( void  ) const

inline

version of db searched (usually size) Check if a value has been assigned to Dbversion data member.

Data member Dbversion is optional; its type is defined as 'typedef int TDbversion'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 717 of file MSResponse_.hpp.

References CMSResponse_Base::m_set_State.

Referenced by CMSResponse_Base::CanGetDbversion(), and CMSResponse_Base::SetDbversion().

IsSetDefline()

bool CMSPepHit_Base::IsSetDefline ( void  ) const

inline

sequence description Check if a value has been assigned to Defline data member.

Data member Defline is optional; its type is defined as 'typedef string TDefline'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 722 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_set_State.

Referenced by CMSPepHit_Base::CanGetDefline(), and CMSPepHit_Base::SetDefline().

IsSetDoublenum()

bool CMSSearchSettings_Base::IsSetDoublenum ( void  ) const

inline

the number of peaks allowed in the double window Check if a value has been assigned to Doublenum data member.

Data member Doublenum is mandatory; its type is defined as 'typedef int TDoublenum'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2887 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetDoublenum(), and CMSSearchSettings_Base::SetDoublenum().

IsSetDoublewin()

bool CMSSearchSettings_Base::IsSetDoublewin ( void  ) const

inline

the size of the double charge filtering window Check if a value has been assigned to Doublewin data member.

Data member Doublewin is mandatory; its type is defined as 'typedef int TDoublewin'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2793 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetDoublewin(), and CMSSearchSettings_Base::SetDoublewin().

IsSetEmail()

bool CMSResponse_Base::IsSetEmail ( void  ) const

inline

email address for notification Check if a value has been assigned to Email data member.

Data member Email is optional; its type is defined as 'typedef string TEmail'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 670 of file MSResponse_.hpp.

References CMSResponse_Base::m_set_State.

Referenced by CMSResponse_Base::CanGetEmail(), and CMSResponse_Base::SetEmail().

IsSetEnzyme()

bool CMSSearchSettings_Base::IsSetEnzyme ( void  ) const

inline

digestion enzyme Check if a value has been assigned to Enzyme data member.

Data member Enzyme is mandatory; its type is defined as 'typedef int TEnzyme'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2984 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetEnzyme(), and CMSSearchSettings_Base::SetEnzyme().

IsSetError() [1/2]

bool CMSHitSet_Base::IsSetError ( void  ) const

inline

error, if any Check if a value has been assigned to Error data member.

Data member Error is optional; its type is defined as 'typedef int TError'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 444 of file MSHitSet_.hpp.

References CMSHitSet_Base::m_set_State.

Referenced by CMSHitSet_Base::CanGetError(), and CMSHitSet_Base::SetError().

IsSetError() [2/2]

bool CMSResponse_Base::IsSetError ( void  ) const

inline

error response Check if a value has been assigned to Error data member.

Data member Error is optional; its type is defined as 'typedef int TError'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 576 of file MSResponse_.hpp.

References CMSResponse_Base::m_set_State.

Referenced by CMSResponse_Base::CanGetError(), and CMSResponse_Base::SetError().

IsSetEvalue()

bool CMSHits_Base::IsSetEvalue ( void  ) const

inline

E-value (expect value) Check if a value has been assigned to Evalue data member.

Data member Evalue is mandatory; its type is defined as 'typedef double TEvalue'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 722 of file MSHits_.hpp.

References CMSHits_Base::m_set_State.

Referenced by CMSHits_Base::CanGetEvalue(), and CMSHits_Base::SetEvalue().

IsSetExactmass()

bool CMSSearchSettings_Base::IsSetExactmass ( void  ) const

inline

the threshold in Da for adding neutron Check if a value has been assigned to Exactmass data member.

Data member Exactmass is optional; its type is defined as 'typedef double TExactmass'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3789 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetExactmass(), and CMSSearchSettings_Base::SetExactmass().

IsSetFixed()

bool CMSSearchSettings_Base::IsSetFixed ( void  ) const

inline

fixed PTM's Check if a value has been assigned to Fixed data member.

Data member Fixed is mandatory; its type is defined as 'typedef list< int > TFixed'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2934 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

IsSetGi()

bool CMSPepHit_Base::IsSetGi ( void  ) const

inline

genbank identifier Check if a value has been assigned to Gi data member.

Data member Gi is optional; its type is defined as 'typedef NCBI_NS_NCBI::TGi TGi'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 628 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_set_State.

Referenced by CMSPepHit_Base::CanGetGi(), and CMSPepHit_Base::SetGi().

IsSetHitlistlen()

bool CMSSearchSettings_Base::IsSetHitlistlen ( void  ) const

inline

the number of hits kept in memory for a spectrum Check if a value has been assigned to Hitlistlen data member.

Data member Hitlistlen is optional with default 25; its type is defined as 'typedef int THitlistlen'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3078 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::SetHitlistlen().

IsSetHits()

bool CMSHitSet_Base::IsSetHits ( void  ) const

inline

set of hit to spectrum Check if a value has been assigned to Hits data member.

Data member Hits is optional; its type is defined as 'typedef vector< CRef< CMSHits > > THits'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 491 of file MSHitSet_.hpp.

References CMSHitSet_Base::m_set_State.

IsSetHitsets()

bool CMSResponse_Base::IsSetHitsets ( void  ) const

inline

hits grouped by spectrum Check if a value has been assigned to Hitsets data member.

Data member Hitsets is mandatory; its type is defined as 'typedef vector< CRef< CMSHitSet > > THitsets'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 454 of file MSResponse_.hpp.

References CMSResponse_Base::m_set_State.

IsSetIds() [1/2]

bool CMSHitSet_Base::IsSetIds ( void  ) const

inline

filenames or other ids of spectra searched Check if a value has been assigned to Ids data member.

Data member Ids is optional; its type is defined as 'typedef list< string > TIds'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 516 of file MSHitSet_.hpp.

References CMSHitSet_Base::m_set_State.

IsSetIds() [2/2]

bool CMSSpectrum_Base::IsSetIds ( void  ) const

inline

ids/filenames Check if a value has been assigned to Ids data member.

Data member Ids is optional; its type is defined as 'typedef list< string > TIds'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 639 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_set_State.

IsSetImmonium()

bool CMSIon_Base::IsSetImmonium ( void  ) const

inline

if iontype is immonium, show characteristics Check if a value has been assigned to Immonium data member.

Data member Immonium is optional; its type is defined as 'typedef CMSImmonium TImmonium'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 431 of file MSIon_.hpp.

References CMSIon_Base::m_Immonium.

Referenced by CMSIon_Base::CanGetImmonium().

IsSetIncluderequest()

bool CMSOutFile_Base::IsSetIncluderequest ( void  ) const

inline

should the output include the request? Check if a value has been assigned to Includerequest data member.

Data member Includerequest is mandatory; its type is defined as 'typedef bool TIncluderequest'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 337 of file MSOutFile_.hpp.

References CMSOutFile_Base::m_set_State.

Referenced by CMSOutFile_Base::CanGetIncluderequest(), and CMSOutFile_Base::SetIncluderequest().

IsSetIndex()

bool CMSMZHit_Base::IsSetIndex ( void  ) const

inline

the index of the peak in the original spectrum Check if a value has been assigned to Index data member.

Data member Index is optional; its type is defined as 'typedef int TIndex'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 599 of file MSMZHit_.hpp.

References CMSMZHit_Base::m_set_State.

Referenced by CMSMZHit_Base::CanGetIndex(), and CMSMZHit_Base::SetIndex().

IsSetInfile()

bool CMSInFile_Base::IsSetInfile ( void  ) const

inline

input file name Check if a value has been assigned to Infile data member.

Data member Infile is mandatory; its type is defined as 'typedef string TInfile'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 202 of file MSInFile_.hpp.

References CMSInFile_Base::m_set_State.

Referenced by CMSInFile_Base::CanGetInfile(), and CMSInFile_Base::SetInfile().

IsSetInfiles()

bool CMSSearchSettings_Base::IsSetInfiles ( void  ) const

inline

input files Check if a value has been assigned to Infiles data member.

Data member Infiles is optional; its type is defined as 'typedef list< CRef< CMSInFile > > TInfiles'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3951 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

IsSetInfiletype()

bool CMSInFile_Base::IsSetInfiletype ( void  ) const

inline

input file type Check if a value has been assigned to Infiletype data member.

Data member Infiletype is mandatory; its type is defined as 'typedef int TInfiletype'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 249 of file MSInFile_.hpp.

References CMSInFile_Base::m_set_State.

Referenced by CMSInFile_Base::CanGetInfiletype(), and CMSInFile_Base::SetInfiletype().

IsSetInternal()

bool CMSIon_Base::IsSetInternal ( void  ) const

inline

if iontype is internal, this is the internal sequence Check if a value has been assigned to Internal data member.

Data member Internal is optional; its type is defined as 'typedef string TInternal'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 384 of file MSIon_.hpp.

References CMSIon_Base::m_set_State.

Referenced by CMSIon_Base::CanGetInternal(), and CMSIon_Base::SetInternal().

IsSetIon()

bool CMSMZHit_Base::IsSetIon ( void  ) const

inline

ion type, e.g.

b Check if a value has been assigned to Ion data member.

Data member Ion is mandatory; its type is defined as 'typedef int TIon'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 411 of file MSMZHit_.hpp.

References CMSMZHit_Base::m_set_State.

Referenced by CMSMZHit_Base::CanGetIon(), and CMSMZHit_Base::SetIon().

IsSetIonstosearch()

bool CMSSearchSettings_Base::IsSetIonstosearch ( void  ) const

inline

which ions to search? Check if a value has been assigned to Ionstosearch data member.

Data member Ionstosearch is mandatory; its type is defined as 'typedef list< int > TIonstosearch'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2392 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

IsSetIscale()

bool CMSSpectrum_Base::IsSetIscale ( void  ) const

inline

abundance scale, float to integer Check if a value has been assigned to Iscale data member.

Data member Iscale is mandatory; its type is defined as 'typedef double TIscale'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 592 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_set_State.

Referenced by CMSSpectrum_Base::CanGetIscale(), and CMSSpectrum_Base::SetIscale().

IsSetIsotope()

bool CMSIon_Base::IsSetIsotope ( void  ) const

inline

isotopic composition of peak Check if a value has been assigned to Isotope data member.

Data member Isotope is optional; its type is defined as 'typedef int TIsotope'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 337 of file MSIon_.hpp.

References CMSIon_Base::m_set_State.

Referenced by CMSIon_Base::CanGetIsotope(), and CMSIon_Base::SetIsotope().

IsSetIterativesettings()

bool CMSSearchSettings_Base::IsSetIterativesettings ( void  ) const

inline

iterative search settings Check if a value has been assigned to Iterativesettings data member.

Data member Iterativesettings is optional; its type is defined as 'typedef CMSIterativeSettings TIterativesettings'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3883 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Iterativesettings.

Referenced by CMSSearchSettings_Base::CanGetIterativesettings(), and CMSSearchSettings::Validate().

IsSetLibaccession()

bool CMSHits_Base::IsSetLibaccession ( void  ) const

inline

library search accesssion Check if a value has been assigned to Libaccession data member.

Data member Libaccession is optional; its type is defined as 'typedef string TLibaccession'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1292 of file MSHits_.hpp.

References CMSHits_Base::m_set_State.

Referenced by CMSHits_Base::CanGetLibaccession(), and CMSHits_Base::SetLibaccession().

IsSetLibnames()

bool CMSLibrarySettings_Base::IsSetLibnames ( void  ) const

inline

names of search libraries Check if a value has been assigned to Libnames data member.

Data member Libnames is mandatory; its type is defined as 'typedef list< string > TLibnames'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 319 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::m_set_State.

IsSetLibsearchsettings()

bool CMSSearchSettings_Base::IsSetLibsearchsettings ( void  ) const

inline

library search settings Check if a value has been assigned to Libsearchsettings data member.

Data member Libsearchsettings is optional; its type is defined as 'typedef CMSLibrarySettings TLibsearchsettings'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 4236 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Libsearchsettings.

Referenced by CMSSearchSettings_Base::CanGetLibsearchsettings().

IsSetLomasscutoff()

bool CMSSearchSettings_Base::IsSetLomasscutoff ( void  ) const

inline

low mass filter in Daltons, unscaled Check if a value has been assigned to Lomasscutoff data member.

Data member Lomasscutoff is optional; its type is defined as 'typedef double TLomasscutoff'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 4189 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetLomasscutoff(), and CMSSearchSettings_Base::SetLomasscutoff().

IsSetMass()

bool CMSHits_Base::IsSetMass ( void  ) const

inline

scaled experimental mass of peptide in Da Check if a value has been assigned to Mass data member.

Data member Mass is optional; its type is defined as 'typedef int TMass'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 960 of file MSHits_.hpp.

References CMSHits_Base::m_set_State.

Referenced by CMSHits_Base::CanGetMass(), and CMSHits_Base::SetMass().

IsSetMassdiff()

bool CMSIonAnnot_Base::IsSetMassdiff ( void  ) const

inline

what is the difference in mass from library spectrum? Check if a value has been assigned to Massdiff data member.

Data member Massdiff is optional; its type is defined as 'typedef double TMassdiff'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 285 of file MSIonAnnot_.hpp.

References CMSIonAnnot_Base::m_set_State.

Referenced by CMSIonAnnot_Base::CanGetMassdiff(), and CMSIonAnnot_Base::SetMassdiff().

IsSetMaxcharge()

bool CMSChargeHandle_Base::IsSetMaxcharge ( void  ) const

inline

if userange, what is the max? Check if a value has been assigned to Maxcharge data member.

Data member Maxcharge is optional with default 3; its type is defined as 'typedef int TMaxcharge'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 657 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_set_State.

Referenced by CMSChargeHandle_Base::SetMaxcharge().

IsSetMaxmods()

bool CMSSearchSettings_Base::IsSetMaxmods ( void  ) const

inline

maximum number of mass ladders per database peptide Check if a value has been assigned to Maxmods data member.

Data member Maxmods is optional with default 64; its type is defined as 'typedef int TMaxmods'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3372 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::SetMaxmods().

IsSetMaxnoenzyme()

bool CMSSearchSettings_Base::IsSetMaxnoenzyme ( void  ) const

inline

max number of AA in peptide for noenzyme search (0=none) Check if a value has been assigned to Maxnoenzyme data member.

Data member Maxnoenzyme is optional with default 0; its type is defined as 'typedef int TMaxnoenzyme'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3739 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::SetMaxnoenzyme().

IsSetMaxproductcharge()

bool CMSChargeHandle_Base::IsSetMaxproductcharge ( void  ) const

inline

maximum product ion charge Check if a value has been assigned to Maxproductcharge data member.

Data member Maxproductcharge is optional; its type is defined as 'typedef int TMaxproductcharge'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 804 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_set_State.

Referenced by CMSChargeHandle_Base::CanGetMaxproductcharge(), and CMSChargeHandle_Base::SetMaxproductcharge().

IsSetMaxproductions()

bool CMSSearchSettings_Base::IsSetMaxproductions ( void  ) const

inline

max number of ions in each series (0=all) Check if a value has been assigned to Maxproductions data member.

Data member Maxproductions is optional with default 0; its type is defined as 'typedef int TMaxproductions'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3639 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::SetMaxproductions().

IsSetMincharge()

bool CMSChargeHandle_Base::IsSetMincharge ( void  ) const

inline

if userange, what is the min? Check if a value has been assigned to Mincharge data member.

Data member Mincharge is optional with default 2; its type is defined as 'typedef int TMincharge'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 607 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_set_State.

Referenced by CMSChargeHandle_Base::SetMincharge().

IsSetMinhit()

bool CMSSearchSettings_Base::IsSetMinhit ( void  ) const

inline

minimum number of m/z values for a valid hit Check if a value has been assigned to Minhit data member.

Data member Minhit is optional with default 2; its type is defined as 'typedef int TMinhit'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3222 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::SetMinhit().

IsSetMinnoenzyme()

bool CMSSearchSettings_Base::IsSetMinnoenzyme ( void  ) const

inline

min number of AA in peptide for noenzyme search Check if a value has been assigned to Minnoenzyme data member.

Data member Minnoenzyme is optional with default 4; its type is defined as 'typedef int TMinnoenzyme'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3689 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::SetMinnoenzyme().

IsSetMinspectra()

bool CMSSearchSettings_Base::IsSetMinspectra ( void  ) const

inline

minimum number of m/z for a valid spectra Check if a value has been assigned to Minspectra data member.

Data member Minspectra is optional with default 4; its type is defined as 'typedef int TMinspectra'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3272 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::SetMinspectra().

IsSetMissedcleave()

bool CMSSearchSettings_Base::IsSetMissedcleave ( void  ) const

inline

number of missed cleaves allowed Check if a value has been assigned to Missedcleave data member.

Data member Missedcleave is mandatory; its type is defined as 'typedef int TMissedcleave'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3031 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetMissedcleave(), and CMSSearchSettings_Base::SetMissedcleave().

IsSetMissingisotope()

bool CMSIonAnnot_Base::IsSetMissingisotope ( void  ) const

inline

are the lower mass peaks missing? Check if a value has been assigned to Missingisotope data member.

Data member Missingisotope is optional; its type is defined as 'typedef bool TMissingisotope'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 332 of file MSIonAnnot_.hpp.

References CMSIonAnnot_Base::m_set_State.

Referenced by CMSIonAnnot_Base::CanGetMissingisotope(), and CMSIonAnnot_Base::SetMissingisotope().

IsSetMod()

bool CMSModSpec_Base::IsSetMod ( void  ) const

inline

what is the mod Check if a value has been assigned to Mod data member.

Data member Mod is mandatory; its type is defined as 'typedef int TMod'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 532 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_set_State.

Referenced by CMSModSpec_Base::CanGetMod(), and CMSModSpec_Base::SetMod().

IsSetMods()

bool CMSHits_Base::IsSetMods ( void  ) const

inline

modifications to sequence Check if a value has been assigned to Mods data member.

Data member Mods is optional; its type is defined as 'typedef list< CRef< CMSModHit > > TMods'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1007 of file MSHits_.hpp.

References CMSHits_Base::m_set_State.

IsSetModset()

bool CMSRequest_Base::IsSetModset ( void  ) const

inline

list of mods that can be used in search Check if a value has been assigned to Modset data member.

Data member Modset is optional; its type is defined as 'typedef CMSModSpecSet TModset'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 460 of file MSRequest_.hpp.

References CMSRequest_Base::m_Modset.

Referenced by CMSRequest_Base::CanGetModset().

IsSetModtype()

bool CMSModHit_Base::IsSetModtype ( void  ) const

inline

the type of modification Check if a value has been assigned to Modtype data member.

Data member Modtype is mandatory; its type is defined as 'typedef int TModtype'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 248 of file MSModHit_.hpp.

References CMSModHit_Base::m_set_State.

Referenced by CMSModHit_Base::CanGetModtype(), and CMSModHit_Base::SetModtype().

IsSetMonomass() [1/2]

bool CMSMassSet_Base::IsSetMonomass ( void  ) const

inline

Check if a value has been assigned to Monomass data member.

Data member Monomass is mandatory; its type is defined as 'typedef double TMonomass'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 235 of file MSMassSet_.hpp.

References CMSMassSet_Base::m_set_State.

Referenced by CMSMassSet_Base::CanGetMonomass(), and CMSMassSet_Base::SetMonomass().

IsSetMonomass() [2/2]

bool CMSModSpec_Base::IsSetMonomass ( void  ) const

inline

monoisotopic mass Check if a value has been assigned to Monomass data member.

Data member Monomass is mandatory; its type is defined as 'typedef double TMonomass'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 673 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_set_State.

Referenced by CMSModSpec_Base::CanGetMonomass(), and CMSModSpec_Base::SetMonomass().

IsSetMoreion()

bool CMSMZHit_Base::IsSetMoreion ( void  ) const

inline

more information about the ion type Check if a value has been assigned to Moreion data member.

Data member Moreion is optional; its type is defined as 'typedef CMSIon TMoreion'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 646 of file MSMZHit_.hpp.

References CMSMZHit_Base::m_Moreion.

Referenced by CMSMZHit_Base::CanGetMoreion().

IsSetMoresettings()

bool CMSRequest_Base::IsSetMoresettings ( void  ) const

inline

additional search runs Check if a value has been assigned to Moresettings data member.

Data member Moresettings is optional; its type is defined as 'typedef CMSSearchSettingsSet TMoresettings'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 439 of file MSRequest_.hpp.

References CMSRequest_Base::m_Moresettings.

Referenced by CMSRequest_Base::CanGetMoresettings().

IsSetMsmsppm()

bool CMSSearchSettings_Base::IsSetMsmsppm ( void  ) const

inline

search product as ppm Check if a value has been assigned to Msmsppm data member.

Data member Msmsppm is optional; its type is defined as 'typedef bool TMsmsppm'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 4448 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetMsmsppm(), and CMSSearchSettings_Base::SetMsmsppm().

IsSetMsmstol()

bool CMSSearchSettings_Base::IsSetMsmstol ( void  ) const

inline

msms mass tolerance Check if a value has been assigned to Msmstol data member.

Data member Msmstol is mandatory; its type is defined as 'typedef double TMsmstol'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2464 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetMsmstol(), and CMSSearchSettings_Base::SetMsmstol().

IsSetMz() [1/2]

bool CMSMZHit_Base::IsSetMz ( void  ) const

inline

scaled m/z value in Da Check if a value has been assigned to Mz data member.

Data member Mz is mandatory; its type is defined as 'typedef int TMz'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 552 of file MSMZHit_.hpp.

References CMSMZHit_Base::m_set_State.

Referenced by CMSMZHit_Base::CanGetMz(), and CMSMZHit_Base::SetMz().

IsSetMz() [2/2]

bool CMSSpectrum_Base::IsSetMz ( void  ) const

inline

scaled product m/z Check if a value has been assigned to Mz data member.

Data member Mz is mandatory; its type is defined as 'typedef vector< int > TMz'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 542 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_set_State.

IsSetMzhits()

bool CMSHits_Base::IsSetMzhits ( void  ) const

inline

ions hit Check if a value has been assigned to Mzhits data member.

Data member Mzhits is optional; its type is defined as 'typedef list< CRef< CMSMZHit > > TMzhits'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 888 of file MSHits_.hpp.

References CMSHits_Base::m_set_State.

IsSetN15mass() [1/2]

bool CMSMassSet_Base::IsSetN15mass ( void  ) const

inline

Check if a value has been assigned to N15mass data member.

Data member N15mass is mandatory; its type is defined as 'typedef double TN15mass'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 329 of file MSMassSet_.hpp.

References CMSMassSet_Base::m_set_State.

Referenced by CMSMassSet_Base::CanGetN15mass(), and CMSMassSet_Base::SetN15mass().

IsSetN15mass() [2/2]

bool CMSModSpec_Base::IsSetN15mass ( void  ) const

inline

monoisotopic n15 mass Check if a value has been assigned to N15mass data member.

Data member N15mass is mandatory; its type is defined as 'typedef double TN15mass'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 767 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_set_State.

Referenced by CMSModSpec_Base::CanGetN15mass(), and CMSModSpec_Base::SetN15mass().

IsSetName() [1/3]

bool CMSModSpec_Base::IsSetName ( void  ) const

inline

friendly name of mod Check if a value has been assigned to Name data member.

Data member Name is mandatory; its type is defined as 'typedef string TName'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 626 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_set_State.

Referenced by CMSModSpec_Base::CanGetName(), and CMSModSpec_Base::SetName().

IsSetName() [2/3]

bool CMSScoreSet_Base::IsSetName ( void  ) const

inline

Check if a value has been assigned to Name data member.

Data member Name is mandatory; its type is defined as 'typedef string TName'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 200 of file MSScoreSet_.hpp.

References CMSScoreSet_Base::m_set_State.

Referenced by CMSScoreSet_Base::CanGetName(), and CMSScoreSet_Base::SetName().

IsSetName() [3/3]

bool CNameValue_Base::IsSetName ( void  ) const

inline

Check if a value has been assigned to Name data member.

Data member Name is mandatory; its type is defined as 'typedef string TName'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 201 of file NameValue_.hpp.

References CNameValue_Base::m_set_State.

Referenced by CNameValue_Base::CanGetName(), and CNameValue_Base::SetName().

IsSetNamevalue() [1/2]

bool CMSHitSet_Base::IsSetNamevalue ( void  ) const

inline

extra info: retention times, etc.

Check if a value has been assigned to Namevalue data member.

Data member Namevalue is optional; its type is defined as 'typedef list< CRef< CNameValue > > TNamevalue'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 541 of file MSHitSet_.hpp.

References CMSHitSet_Base::m_set_State.

IsSetNamevalue() [2/2]

bool CMSSpectrum_Base::IsSetNamevalue ( void  ) const

inline

extra info: retention times, etc.

Check if a value has been assigned to Namevalue data member.

Data member Namevalue is optional; its type is defined as 'typedef list< CRef< CNameValue > > TNamevalue'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 664 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_set_State.

IsSetNegative()

bool CMSChargeHandle_Base::IsSetNegative ( void  ) const

inline

negative ion search if -1, positive ion if 1 Check if a value has been assigned to Negative data member.

Data member Negative is optional with default 1; its type is defined as 'typedef int TNegative'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 898 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_set_State.

Referenced by CMSChargeHandle_Base::SetNegative().

IsSetNeutralloss() [1/2]

bool CMSIon_Base::IsSetNeutralloss ( void  ) const

inline

is this peak a neutral loss? Check if a value has been assigned to Neutralloss data member.

Data member Neutralloss is optional; its type is defined as 'typedef int TNeutralloss'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 290 of file MSIon_.hpp.

References CMSIon_Base::m_set_State.

Referenced by CMSIon_Base::CanGetNeutralloss(), and CMSIon_Base::SetNeutralloss().

IsSetNeutralloss() [2/2]

bool CMSModSpec_Base::IsSetNeutralloss ( void  ) const

inline

loss after precursor mass determination Check if a value has been assigned to Neutralloss data member.

Data member Neutralloss is optional; its type is defined as 'typedef CMSMassSet TNeutralloss'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 839 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_Neutralloss.

Referenced by CMSModSpec_Base::CanGetNeutralloss().

IsSetNmethionine()

bool CMSSearchSettings_Base::IsSetNmethionine ( void  ) const

inline

should nmethionine be cleaved? Check if a value has been assigned to Nmethionine data member.

Data member Nmethionine is optional; its type is defined as 'typedef bool TNmethionine'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 4095 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetNmethionine(), and CMSSearchSettings_Base::SetNmethionine().

IsSetNocorrelationscore()

bool CMSSearchSettings_Base::IsSetNocorrelationscore ( void  ) const

inline

turn on correlation score (1=nocorr) Check if a value has been assigned to Nocorrelationscore data member.

Data member Nocorrelationscore is optional; its type is defined as 'typedef int TNocorrelationscore'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 4001 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetNocorrelationscore(), and CMSSearchSettings_Base::SetNocorrelationscore().

IsSetNoprolineions()

bool CMSSearchSettings_Base::IsSetNoprolineions ( void  ) const

inline

which ions to use no proline rule Check if a value has been assigned to Noprolineions data member.

Data member Noprolineions is optional; its type is defined as 'typedef list< int > TNoprolineions'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 4257 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

IsSetNumber() [1/3]

bool CMSHitSet_Base::IsSetNumber ( void  ) const

inline

unique number of spectrum Check if a value has been assigned to Number data member.

Data member Number is mandatory; its type is defined as 'typedef int TNumber'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 397 of file MSHitSet_.hpp.

References CMSHitSet_Base::m_set_State.

Referenced by CMSHitSet_Base::CanGetNumber(), and CMSHitSet_Base::SetNumber().

IsSetNumber() [2/3]

bool CMSMZHit_Base::IsSetNumber ( void  ) const

inline

the sequential number of the ion Check if a value has been assigned to Number data member.

Data member Number is mandatory; its type is defined as 'typedef int TNumber'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 505 of file MSMZHit_.hpp.

References CMSMZHit_Base::m_set_State.

Referenced by CMSMZHit_Base::CanGetNumber(), and CMSMZHit_Base::SetNumber().

IsSetNumber() [3/3]

bool CMSSpectrum_Base::IsSetNumber ( void  ) const

inline

unique number of spectrum Check if a value has been assigned to Number data member.

Data member Number is mandatory; its type is defined as 'typedef int TNumber'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 423 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_set_State.

Referenced by CMSSpectrum_Base::CanGetNumber(), and CMSSpectrum_Base::SetNumber().

IsSetNumisotopes()

bool CMSSearchSettings_Base::IsSetNumisotopes ( void  ) const

inline

number of isotopic peaks to search when using MSSearchType multiisotope Check if a value has been assigned to Numisotopes data member.

Data member Numisotopes is optional; its type is defined as 'typedef int TNumisotopes'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 4354 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetNumisotopes(), and CMSSearchSettings_Base::SetNumisotopes().

IsSetOid() [1/3]

bool CMSBioseq_Base::IsSetOid ( void  ) const

inline

blast library oid Check if a value has been assigned to Oid data member.

Data member Oid is mandatory; its type is defined as 'typedef int TOid'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 200 of file MSBioseq_.hpp.

References CMSBioseq_Base::m_set_State.

Referenced by CMSBioseq_Base::CanGetOid(), and CMSBioseq_Base::SetOid().

IsSetOid() [2/3]

bool CMSHits_Base::IsSetOid ( void  ) const

inline

blast library oid (depricated) Check if a value has been assigned to Oid data member.

Data member Oid is optional; its type is defined as 'typedef int TOid'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1220 of file MSHits_.hpp.

References CMSHits_Base::m_set_State.

Referenced by CMSHits_Base::CanGetOid(), and CMSHits_Base::SetOid().

IsSetOid() [3/3]

bool CMSPepHit_Base::IsSetOid ( void  ) const

inline

blast library oid Check if a value has been assigned to Oid data member.

Data member Oid is optional; its type is defined as 'typedef int TOid'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 816 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_set_State.

Referenced by CMSPepHit_Base::CanGetOid(), and CMSPepHit_Base::SetOid().

IsSetOthersettings()

bool CMSSearchSettings_Base::IsSetOthersettings ( void  ) const

inline

extra search settings Check if a value has been assigned to Othersettings data member.

Data member Othersettings is optional; its type is defined as 'typedef list< CRef< CNameValue > > TOthersettings'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 4329 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

IsSetOutfile()

bool CMSOutFile_Base::IsSetOutfile ( void  ) const

inline

output file name Check if a value has been assigned to Outfile data member.

Data member Outfile is mandatory; its type is defined as 'typedef string TOutfile'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 243 of file MSOutFile_.hpp.

References CMSOutFile_Base::m_set_State.

Referenced by CMSOutFile_Base::CanGetOutfile(), and CMSOutFile_Base::SetOutfile().

IsSetOutfiles()

bool CMSSearchSettings_Base::IsSetOutfiles ( void  ) const

inline

output files Check if a value has been assigned to Outfiles data member.

Data member Outfiles is optional; its type is defined as 'typedef list< CRef< CMSOutFile > > TOutfiles'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3976 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

IsSetOutfiletype()

bool CMSOutFile_Base::IsSetOutfiletype ( void  ) const

inline

output file type Check if a value has been assigned to Outfiletype data member.

Data member Outfiletype is mandatory; its type is defined as 'typedef int TOutfiletype'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 290 of file MSOutFile_.hpp.

References CMSOutFile_Base::m_set_State.

Referenced by CMSOutFile_Base::CanGetOutfiletype(), and CMSOutFile_Base::SetOutfiletype().

IsSetParent()

bool CMSImmonium_Base::IsSetParent ( void  ) const

inline

parent amino acid Check if a value has been assigned to Parent data member.

Data member Parent is mandatory; its type is defined as 'typedef string TParent'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 203 of file MSImmonium_.hpp.

References CMSImmonium_Base::m_set_State.

Referenced by CMSImmonium_Base::CanGetParent(), and CMSImmonium_Base::SetParent().

IsSetPephits()

bool CMSHits_Base::IsSetPephits ( void  ) const

inline

peptides that match this hit Check if a value has been assigned to Pephits data member.

Data member Pephits is mandatory; its type is defined as 'typedef list< CRef< CMSPepHit > > TPephits'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 863 of file MSHits_.hpp.

References CMSHits_Base::m_set_State.

IsSetPepppm()

bool CMSSearchSettings_Base::IsSetPepppm ( void  ) const

inline

search precursor as ppm Check if a value has been assigned to Pepppm data member.

Data member Pepppm is optional; its type is defined as 'typedef bool TPepppm'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 4401 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetPepppm(), and CMSSearchSettings_Base::SetPepppm().

IsSetPepstart() [1/2]

bool CMSHits_Base::IsSetPepstart ( void  ) const

inline

AA before the peptide (depricated) Check if a value has been assigned to Pepstart data member.

Data member Pepstart is optional; its type is defined as 'typedef string TPepstart'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1032 of file MSHits_.hpp.

References CMSHits_Base::m_set_State.

Referenced by CMSHits_Base::CanGetPepstart(), and CMSHits_Base::SetPepstart().

IsSetPepstart() [2/2]

bool CMSPepHit_Base::IsSetPepstart ( void  ) const

inline

AA before the peptide Check if a value has been assigned to Pepstart data member.

Data member Pepstart is optional; its type is defined as 'typedef string TPepstart'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 910 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_set_State.

Referenced by CMSPepHit_Base::CanGetPepstart(), and CMSPepHit_Base::SetPepstart().

IsSetPepstop() [1/2]

bool CMSHits_Base::IsSetPepstop ( void  ) const

inline

AA after the peptide (depricated) Check if a value has been assigned to Pepstop data member.

Data member Pepstop is optional; its type is defined as 'typedef string TPepstop'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1079 of file MSHits_.hpp.

References CMSHits_Base::m_set_State.

Referenced by CMSHits_Base::CanGetPepstop(), and CMSHits_Base::SetPepstop().

IsSetPepstop() [2/2]

bool CMSPepHit_Base::IsSetPepstop ( void  ) const

inline

AA after the peptide Check if a value has been assigned to Pepstop data member.

Data member Pepstop is optional; its type is defined as 'typedef string TPepstop'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 957 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_set_State.

Referenced by CMSPepHit_Base::CanGetPepstop(), and CMSPepHit_Base::SetPepstop().

IsSetPepstring()

bool CMSHits_Base::IsSetPepstring ( void  ) const

inline

the peptide sequence Check if a value has been assigned to Pepstring data member.

Data member Pepstring is optional; its type is defined as 'typedef string TPepstring'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 913 of file MSHits_.hpp.

References CMSHits_Base::m_set_State.

Referenced by CMSHits_Base::CanGetPepstring(), and CMSHits_Base::SetPepstring().

IsSetPeptol()

bool CMSSearchSettings_Base::IsSetPeptol ( void  ) const

inline

peptide mass tolerance Check if a value has been assigned to Peptol data member.

Data member Peptol is mandatory; its type is defined as 'typedef double TPeptol'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2417 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetPeptol(), and CMSSearchSettings_Base::SetPeptol().

IsSetPlusone()

bool CMSChargeHandle_Base::IsSetPlusone ( void  ) const

inline

what % of peaks below precursor needed to call as +1 Check if a value has been assigned to Plusone data member.

Data member Plusone is mandatory; its type is defined as 'typedef double TPlusone'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 757 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_set_State.

Referenced by CMSChargeHandle_Base::CanGetPlusone(), and CMSChargeHandle_Base::SetPlusone().

IsSetPrecursorcull()

bool CMSSearchSettings_Base::IsSetPrecursorcull ( void  ) const

inline

turn on aggressive precursor culling for ETD (0=none) Check if a value has been assigned to Precursorcull data member.

Data member Precursorcull is optional; its type is defined as 'typedef int TPrecursorcull'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3904 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetPrecursorcull(), and CMSSearchSettings_Base::SetPrecursorcull().

IsSetPrecursormz()

bool CMSSpectrum_Base::IsSetPrecursormz ( void  ) const

inline

scaled precursor m/z, scale is in MSSearchSettings Check if a value has been assigned to Precursormz data member.

Data member Precursormz is mandatory; its type is defined as 'typedef int TPrecursormz'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 495 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_set_State.

Referenced by CMSSpectrum_Base::CanGetPrecursormz(), and CMSSpectrum_Base::SetPrecursormz().

IsSetPrecursorsearchtype()

bool CMSSearchSettings_Base::IsSetPrecursorsearchtype ( void  ) const

inline

average or monoisotopic? Check if a value has been assigned to Precursorsearchtype data member.

Data member Precursorsearchtype is mandatory; its type is defined as 'typedef int TPrecursorsearchtype'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2298 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetPrecursorsearchtype(), and CMSSearchSettings_Base::SetPrecursorsearchtype().

IsSetPresearch()

bool CMSLibrarySettings_Base::IsSetPresearch ( void  ) const

inline

should there be a restriction on precursor mass? Check if a value has been assigned to Presearch data member.

Data member Presearch is mandatory; its type is defined as 'typedef bool TPresearch'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 344 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::m_set_State.

Referenced by CMSLibrarySettings_Base::CanGetPresearch(), and CMSLibrarySettings_Base::SetPresearch().

IsSetProbfollowingion()

bool CMSSearchSettings_Base::IsSetProbfollowingion ( void  ) const

inline

probability of a consecutive ion (used in correlation) Check if a value has been assigned to Probfollowingion data member.

Data member Probfollowingion is optional; its type is defined as 'typedef double TProbfollowingion'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 4048 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetProbfollowingion(), and CMSSearchSettings_Base::SetProbfollowingion().

IsSetProdlesspre()

bool CMSChargeHandle_Base::IsSetProdlesspre ( void  ) const

inline

product charge always less thanor equal to precursor? Check if a value has been assigned to Prodlesspre data member.

Data member Prodlesspre is optional; its type is defined as 'typedef bool TProdlesspre'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 851 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_set_State.

Referenced by CMSChargeHandle_Base::CanGetProdlesspre(), and CMSChargeHandle_Base::SetProdlesspre().

IsSetProduct()

bool CMSImmonium_Base::IsSetProduct ( void  ) const

inline

product ion code Check if a value has been assigned to Product data member.

Data member Product is optional; its type is defined as 'typedef string TProduct'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 250 of file MSImmonium_.hpp.

References CMSImmonium_Base::m_set_State.

Referenced by CMSImmonium_Base::CanGetProduct(), and CMSImmonium_Base::SetProduct().

IsSetProductsearchtype()

bool CMSSearchSettings_Base::IsSetProductsearchtype ( void  ) const

inline

average or monoisotopic? Check if a value has been assigned to Productsearchtype data member.

Data member Productsearchtype is mandatory; its type is defined as 'typedef int TProductsearchtype'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2345 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetProductsearchtype(), and CMSSearchSettings_Base::SetProductsearchtype().

IsSetProtlength() [1/2]

bool CMSHits_Base::IsSetProtlength ( void  ) const

inline

length of protein hit (depricated) Check if a value has been assigned to Protlength data member.

Data member Protlength is optional; its type is defined as 'typedef int TProtlength'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1126 of file MSHits_.hpp.

References CMSHits_Base::m_set_State.

Referenced by CMSHits_Base::CanGetProtlength(), and CMSHits_Base::SetProtlength().

IsSetProtlength() [2/2]

bool CMSPepHit_Base::IsSetProtlength ( void  ) const

inline

length of protein Check if a value has been assigned to Protlength data member.

Data member Protlength is optional; its type is defined as 'typedef int TProtlength'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 769 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_set_State.

Referenced by CMSPepHit_Base::CanGetProtlength(), and CMSPepHit_Base::SetProtlength().

IsSetPseudocount()

bool CMSSearchSettings_Base::IsSetPseudocount ( void  ) const

inline

min number of counts per precursor bin Check if a value has been assigned to Pseudocount data member.

Data member Pseudocount is optional with default 1; its type is defined as 'typedef int TPseudocount'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3489 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::SetPseudocount().

IsSetPsi_ms()

bool CMSModSpec_Base::IsSetPsi_ms ( void  ) const

inline

the PSI-MS equivalent name Check if a value has been assigned to Psi_ms data member.

Data member Psi_ms is optional; its type is defined as 'typedef string TPsi_ms'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 907 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_set_State.

Referenced by CMSModSpec_Base::CanGetPsi_ms(), and CMSModSpec_Base::SetPsi_ms().

IsSetPvalue()

bool CMSHits_Base::IsSetPvalue ( void  ) const

inline

P-value (probability value) Check if a value has been assigned to Pvalue data member.

Data member Pvalue is mandatory; its type is defined as 'typedef double TPvalue'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 769 of file MSHits_.hpp.

References CMSHits_Base::m_set_State.

Referenced by CMSHits_Base::CanGetPvalue(), and CMSHits_Base::SetPvalue().

IsSetQtofscore()

bool CMSLibrarySettings_Base::IsSetQtofscore ( void  ) const

inline

use the qtof score? Check if a value has been assigned to Qtofscore data member.

Data member Qtofscore is mandatory; its type is defined as 'typedef bool TQtofscore'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 485 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::m_set_State.

Referenced by CMSLibrarySettings_Base::CanGetQtofscore(), and CMSLibrarySettings_Base::SetQtofscore().

IsSetReplacethresh()

bool CMSIterativeSettings_Base::IsSetReplacethresh ( void  ) const

inline

e-val threshold for replacing hitset, 0 = only if better Check if a value has been assigned to Replacethresh data member.

Data member Replacethresh is mandatory; its type is defined as 'typedef double TReplacethresh'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 332 of file MSIterativeSettings_.hpp.

References CMSIterativeSettings_Base::m_set_State.

Referenced by CMSIterativeSettings_Base::CanGetReplacethresh(), and CMSIterativeSettings_Base::SetReplacethresh().

IsSetReportedhitcount()

bool CMSSearchSettings_Base::IsSetReportedhitcount ( void  ) const

inline

the maximum number of hits to report per spectrum, 0=all Check if a value has been assigned to Reportedhitcount data member.

Data member Reportedhitcount is optional; its type is defined as 'typedef int TReportedhitcount'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 4495 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetReportedhitcount(), and CMSSearchSettings_Base::SetReportedhitcount().

IsSetRequest()

bool CMSSearch_Base::IsSetRequest ( void  ) const

inline

Check if a value has been assigned to Request data member.

Data member Request is optional; its type is defined as 'typedef list< CRef< CMSRequest > > TRequest'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 192 of file MSSearch_.hpp.

References CMSSearch_Base::m_set_State.

IsSetResearchthresh()

bool CMSIterativeSettings_Base::IsSetResearchthresh ( void  ) const

inline

e-val threshold for re-searching spectra, 0 = always re-search Check if a value has been assigned to Researchthresh data member.

Data member Researchthresh is mandatory; its type is defined as 'typedef double TResearchthresh'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 238 of file MSIterativeSettings_.hpp.

References CMSIterativeSettings_Base::m_set_State.

Referenced by CMSIterativeSettings_Base::CanGetResearchthresh(), and CMSIterativeSettings_Base::SetResearchthresh().

IsSetResidues()

bool CMSModSpec_Base::IsSetResidues ( void  ) const

inline

residues to apply mod to Check if a value has been assigned to Residues data member.

Data member Residues is optional; its type is defined as 'typedef list< string > TResidues'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 814 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_set_State.

IsSetResponse()

bool CMSSearch_Base::IsSetResponse ( void  ) const

inline

Check if a value has been assigned to Response data member.

Data member Response is optional; its type is defined as 'typedef list< CRef< CMSResponse > > TResponse'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 217 of file MSSearch_.hpp.

References CMSSearch_Base::m_set_State.

IsSetReversed()

bool CMSPepHit_Base::IsSetReversed ( void  ) const

inline

reversed sequence Check if a value has been assigned to Reversed data member.

Data member Reversed is optional; its type is defined as 'typedef bool TReversed'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 863 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_set_State.

Referenced by CMSPepHit_Base::CanGetReversed(), and CMSPepHit_Base::SetReversed().

IsSetReversesearch()

bool CMSSearchSettings_Base::IsSetReversesearch ( void  ) const

inline

do reverse search Check if a value has been assigned to Reversesearch data member.

Data member Reversesearch is optional; its type is defined as 'typedef bool TReversesearch'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 4282 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetReversesearch(), and CMSSearchSettings_Base::SetReversesearch().

IsSetRid() [1/2]

bool CMSRequest_Base::IsSetRid ( void  ) const

inline

request id Check if a value has been assigned to Rid data member.

Data member Rid is optional; its type is defined as 'typedef string TRid'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 392 of file MSRequest_.hpp.

References CMSRequest_Base::m_set_State.

Referenced by CMSRequest_Base::CanGetRid(), and CMSRequest_Base::SetRid().

IsSetRid() [2/2]

bool CMSResponse_Base::IsSetRid ( void  ) const

inline

request id Check if a value has been assigned to Rid data member.

Data member Rid is optional; its type is defined as 'typedef string TRid'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 529 of file MSResponse_.hpp.

References CMSResponse_Base::m_set_State.

Referenced by CMSResponse_Base::CanGetRid(), and CMSResponse_Base::SetRid().

IsSetScale() [1/2]

bool CMSResponse_Base::IsSetScale ( void  ) const

inline

scale to change m/z float to integer Check if a value has been assigned to Scale data member.

Data member Scale is optional with default 100; its type is defined as 'typedef int TScale'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 479 of file MSResponse_.hpp.

References CMSResponse_Base::m_set_State.

Referenced by CMSResponse_Base::SetScale().

IsSetScale() [2/2]

bool CMSSearchSettings_Base::IsSetScale ( void  ) const

inline

scale for m/z float to integer Check if a value has been assigned to Scale data member.

Data member Scale is optional with default 100; its type is defined as 'typedef int TScale'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3322 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::SetScale().

IsSetScores()

bool CMSHits_Base::IsSetScores ( void  ) const

inline

optional scores (for library search) Check if a value has been assigned to Scores data member.

Data member Scores is optional; its type is defined as 'typedef list< CRef< CMSScoreSet > > TScores'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1267 of file MSHits_.hpp.

References CMSHits_Base::m_set_State.

IsSetSearchb1()

bool CMSSearchSettings_Base::IsSetSearchb1 ( void  ) const

inline

should b1 product be in search (1=no, 0=yes) Check if a value has been assigned to Searchb1 data member.

Data member Searchb1 is optional with default 0; its type is defined as 'typedef int TSearchb1'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3539 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::SetSearchb1().

IsSetSearchctermproduct()

bool CMSSearchSettings_Base::IsSetSearchctermproduct ( void  ) const

inline

should c terminus ion be searched (1=no, 0=yes) Check if a value has been assigned to Searchctermproduct data member.

Data member Searchctermproduct is optional with default 0; its type is defined as 'typedef int TSearchctermproduct'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3589 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::SetSearchctermproduct().

IsSetSeq()

bool CMSBioseq_Base::IsSetSeq ( void  ) const

inline

Check if a value has been assigned to Seq data member.

Data member Seq is mandatory; its type is defined as 'typedef CBioseq TSeq'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 247 of file MSBioseq_.hpp.

References CMSBioseq_Base::m_Seq.

IsSetSettingid() [1/2]

bool CMSHitSet_Base::IsSetSettingid ( void  ) const

inline

id of the search setting used Check if a value has been assigned to Settingid data member.

Data member Settingid is optional; its type is defined as 'typedef int TSettingid'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 566 of file MSHitSet_.hpp.

References CMSHitSet_Base::m_set_State.

Referenced by CMSHitSet_Base::CanGetSettingid(), and CMSHitSet_Base::SetSettingid().

IsSetSettingid() [2/2]

bool CMSSearchSettings_Base::IsSetSettingid ( void  ) const

inline

id of the search settings Check if a value has been assigned to Settingid data member.

Data member Settingid is optional; its type is defined as 'typedef int TSettingid'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3836 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetSettingid(), and CMSSearchSettings_Base::SetSettingid().

IsSetSettings()

bool CMSRequest_Base::IsSetSettings ( void  ) const

inline

the search settings Check if a value has been assigned to Settings data member.

Data member Settings is mandatory; its type is defined as 'typedef CMSSearchSettings TSettings'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 362 of file MSRequest_.hpp.

References CMSRequest_Base::m_Settings.

IsSetSinglenum()

bool CMSSearchSettings_Base::IsSetSinglenum ( void  ) const

inline

the number of peaks allowed in the single window Check if a value has been assigned to Singlenum data member.

Data member Singlenum is mandatory; its type is defined as 'typedef int TSinglenum'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2840 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetSinglenum(), and CMSSearchSettings_Base::SetSinglenum().

IsSetSinglewin()

bool CMSSearchSettings_Base::IsSetSinglewin ( void  ) const

inline

the size of the single charge filtering window Check if a value has been assigned to Singlewin data member.

Data member Singlewin is mandatory; its type is defined as 'typedef int TSinglewin'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2746 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetSinglewin(), and CMSSearchSettings_Base::SetSinglewin().

IsSetSite()

bool CMSModHit_Base::IsSetSite ( void  ) const

inline

the position in the peptide Check if a value has been assigned to Site data member.

Data member Site is mandatory; its type is defined as 'typedef int TSite'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 201 of file MSModHit_.hpp.

References CMSModHit_Base::m_set_State.

Referenced by CMSModHit_Base::CanGetSite(), and CMSModHit_Base::SetSite().

IsSetSpectra()

bool CMSRequest_Base::IsSetSpectra ( void  ) const

inline

the set of spectra Check if a value has been assigned to Spectra data member.

Data member Spectra is mandatory; its type is defined as 'typedef CMSSpectrumset TSpectra'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 332 of file MSRequest_.hpp.

References CMSRequest_Base::m_Spectra.

IsSetStart()

bool CMSPepHit_Base::IsSetStart ( void  ) const

inline

start position (inclusive) in sequence Check if a value has been assigned to Start data member.

Data member Start is mandatory; its type is defined as 'typedef int TStart'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 534 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_set_State.

Referenced by CMSPepHit_Base::CanGetStart(), and CMSPepHit_Base::SetStart().

IsSetStop()

bool CMSPepHit_Base::IsSetStop ( void  ) const

inline

stop position (inclusive) in sequence Check if a value has been assigned to Stop data member.

Data member Stop is mandatory; its type is defined as 'typedef int TStop'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 581 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_set_State.

Referenced by CMSPepHit_Base::CanGetStop(), and CMSPepHit_Base::SetStop().

IsSetSubsetthresh()

bool CMSIterativeSettings_Base::IsSetSubsetthresh ( void  ) const

inline

e-val threshold for picking sequence subset, 0 = all sequences Check if a value has been assigned to Subsetthresh data member.

Data member Subsetthresh is mandatory; its type is defined as 'typedef double TSubsetthresh'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 285 of file MSIterativeSettings_.hpp.

References CMSIterativeSettings_Base::m_set_State.

Referenced by CMSIterativeSettings_Base::CanGetSubsetthresh(), and CMSIterativeSettings_Base::SetSubsetthresh().

IsSetSuspect()

bool CMSIonAnnot_Base::IsSetSuspect ( void  ) const

inline

is this peak suspect? Check if a value has been assigned to Suspect data member.

Data member Suspect is optional; its type is defined as 'typedef bool TSuspect'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 238 of file MSIonAnnot_.hpp.

References CMSIonAnnot_Base::m_set_State.

Referenced by CMSIonAnnot_Base::CanGetSuspect(), and CMSIonAnnot_Base::SetSuspect().

IsSetTaxids()

bool CMSSearchSettings_Base::IsSetTaxids ( void  ) const

inline

taxa to limit search Check if a value has been assigned to Taxids data member.

Data member Taxids is optional; its type is defined as 'typedef list< int > TTaxids'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3422 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings::Validate().

IsSetTheomass()

bool CMSHits_Base::IsSetTheomass ( void  ) const

inline

scaled theoretical mass of peptide hit Check if a value has been assigned to Theomass data member.

Data member Theomass is optional; its type is defined as 'typedef int TTheomass'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 1173 of file MSHits_.hpp.

References CMSHits_Base::m_set_State.

Referenced by CMSHits_Base::CanGetTheomass(), and CMSHits_Base::SetTheomass().

IsSetTophitnum()

bool CMSSearchSettings_Base::IsSetTophitnum ( void  ) const

inline

number of m/z to consider in first pass Check if a value has been assigned to Tophitnum data member.

Data member Tophitnum is mandatory; its type is defined as 'typedef int TTophitnum'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3175 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetTophitnum(), and CMSSearchSettings_Base::SetTophitnum().

IsSetType()

bool CMSModSpec_Base::IsSetType ( void  ) const

inline

modification type Check if a value has been assigned to Type data member.

Data member Type is mandatory; its type is defined as 'typedef int TType'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 579 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_set_State.

Referenced by CMSModSpec_Base::CanGetType(), and CMSModSpec_Base::SetType().

IsSetUnimod()

bool CMSModSpec_Base::IsSetUnimod ( void  ) const

inline

the equivalent Unimod Accession number Check if a value has been assigned to Unimod data member.

Data member Unimod is optional; its type is defined as 'typedef int TUnimod'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 860 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_set_State.

Referenced by CMSModSpec_Base::CanGetUnimod(), and CMSModSpec_Base::SetUnimod().

IsSetUseomssascore()

bool CMSLibrarySettings_Base::IsSetUseomssascore ( void  ) const

inline

use the omssa score? Check if a value has been assigned to Useomssascore data member.

Data member Useomssascore is mandatory; its type is defined as 'typedef bool TUseomssascore'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 391 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::m_set_State.

Referenced by CMSLibrarySettings_Base::CanGetUseomssascore(), and CMSLibrarySettings_Base::SetUseomssascore().

IsSetUserannotation()

bool CMSHitSet_Base::IsSetUserannotation ( void  ) const

inline

allows users to flag certain Check if a value has been assigned to Userannotation data member.

Data member Userannotation is optional; its type is defined as 'typedef int TUserannotation'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 613 of file MSHitSet_.hpp.

References CMSHitSet_Base::m_set_State.

Referenced by CMSHitSet_Base::CanGetUserannotation(), and CMSHitSet_Base::SetUserannotation().

IsSetUsereplicatescore()

bool CMSLibrarySettings_Base::IsSetUsereplicatescore ( void  ) const

inline

use the number of replicates score? Check if a value has been assigned to Usereplicatescore data member.

Data member Usereplicatescore is mandatory; its type is defined as 'typedef bool TUsereplicatescore'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 438 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::m_set_State.

Referenced by CMSLibrarySettings_Base::CanGetUsereplicatescore(), and CMSLibrarySettings_Base::SetUsereplicatescore().

IsSetUsermods()

bool CMSSearchSettings_Base::IsSetUsermods ( void  ) const

inline

user defined modifications Check if a value has been assigned to Usermods data member.

Data member Usermods is optional; its type is defined as 'typedef CMSModSpecSet TUsermods'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 3468 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Usermods.

Referenced by CMSSearchSettings_Base::CanGetUsermods().

IsSetValue() [1/2]

bool CMSScoreSet_Base::IsSetValue ( void  ) const

inline

Check if a value has been assigned to Value data member.

Data member Value is mandatory; its type is defined as 'typedef double TValue'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 247 of file MSScoreSet_.hpp.

References CMSScoreSet_Base::m_set_State.

Referenced by CMSScoreSet_Base::CanGetValue(), and CMSScoreSet_Base::SetValue().

IsSetValue() [2/2]

bool CNameValue_Base::IsSetValue ( void  ) const

inline

Check if a value has been assigned to Value data member.

Data member Value is mandatory; its type is defined as 'typedef string TValue'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 248 of file NameValue_.hpp.

References CNameValue_Base::m_set_State.

Referenced by CNameValue_Base::CanGetValue(), and CNameValue_Base::SetValue().

IsSetVariable()

bool CMSSearchSettings_Base::IsSetVariable ( void  ) const

inline

variable PTM's Check if a value has been assigned to Variable data member.

Data member Variable is mandatory; its type is defined as 'typedef list< int > TVariable'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2959 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

IsSetVersion()

bool CMSResponse_Base::IsSetVersion ( void  ) const

inline

version of OMSSA Check if a value has been assigned to Version data member.

Data member Version is optional; its type is defined as 'typedef string TVersion'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 623 of file MSResponse_.hpp.

References CMSResponse_Base::m_set_State.

Referenced by CMSResponse_Base::CanGetVersion(), and CMSResponse_Base::SetVersion().

IsSetZdep()

bool CMSSearchSettings_Base::IsSetZdep ( void  ) const

inline

what is the charge dependence of the mass tolerance? Check if a value has been assigned to Zdep data member.

Data member Zdep is mandatory; its type is defined as 'typedef int TZdep'

Returns

• true, if a value has been assigned.
• false, otherwise.

Definition at line 2511 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::CanGetZdep(), and CMSSearchSettings_Base::SetZdep().

operator const Tdata &() [1/4]

CMSBioseqSet_Base::operator const CMSBioseqSet_Base::Tdata & ( void  ) const

inline

Conversion operator to 'const Tdata' type.

Definition at line 177 of file MSBioseqSet_.hpp.

operator const Tdata &() [2/4]

CMSModSpecSet_Base::operator const CMSModSpecSet_Base::Tdata & ( void  ) const

inline

Conversion operator to 'const Tdata' type.

Definition at line 178 of file MSModSpecSet_.hpp.

operator const Tdata &() [3/4]

CMSSearchSettingsSet_Base::operator const CMSSearchSettingsSet_Base::Tdata & ( void  ) const

inline

Conversion operator to 'const Tdata' type.

Definition at line 177 of file MSSearchSettingsSet_.hpp.

operator const Tdata &() [4/4]

CMSSpectrumset_Base::operator const CMSSpectrumset_Base::Tdata & ( void  ) const

inline

Conversion operator to 'const Tdata' type.

Definition at line 178 of file MSSpectrumset_.hpp.

operator Tdata &() [1/4]

CMSBioseqSet_Base::operator CMSBioseqSet_Base::Tdata & ( void  )

inline

Conversion operator to 'Tdata' type.

Definition at line 183 of file MSBioseqSet_.hpp.

operator Tdata &() [2/4]

CMSModSpecSet_Base::operator CMSModSpecSet_Base::Tdata & ( void  )

inline

Conversion operator to 'Tdata' type.

Definition at line 184 of file MSModSpecSet_.hpp.

operator Tdata &() [3/4]

CMSSearchSettingsSet_Base::operator CMSSearchSettingsSet_Base::Tdata & ( void  )

inline

Conversion operator to 'Tdata' type.

Definition at line 183 of file MSSearchSettingsSet_.hpp.

operator Tdata &() [4/4]

CMSSpectrumset_Base::operator CMSSpectrumset_Base::Tdata & ( void  )

inline

Conversion operator to 'Tdata' type.

Definition at line 184 of file MSSpectrumset_.hpp.

operator=() [1/47]

CMSBioseq& CMSBioseq::operator= ( const CMSBioseq &  value )

private

operator=() [2/47]

CMSBioseq_Base& CMSBioseq_Base::operator= ( const CMSBioseq_Base &  )

private

operator=() [3/47]

CMSBioseqSet_Base& CMSBioseqSet_Base::operator= ( const CMSBioseqSet_Base &  )

private

operator=() [4/47]

CMSChargeHandle& CMSChargeHandle::operator= ( const CMSChargeHandle &  value )

private

operator=() [5/47]

CMSChargeHandle_Base& CMSChargeHandle_Base::operator= ( const CMSChargeHandle_Base &  )

private

operator=() [6/47]

CMSHits_Base& CMSHits_Base::operator= ( const CMSHits_Base &  )

private

operator=() [7/47]

CMSHitSet& CMSHitSet::operator= ( const CMSHitSet &  value )

private

operator=() [8/47]

CMSHitSet_Base& CMSHitSet_Base::operator= ( const CMSHitSet_Base &  )

private

operator=() [9/47]

CMSImmonium& CMSImmonium::operator= ( const CMSImmonium &  value )

private

operator=() [10/47]

CMSImmonium_Base& CMSImmonium_Base::operator= ( const CMSImmonium_Base &  )

private

operator=() [11/47]

CMSInFile& CMSInFile::operator= ( const CMSInFile &  value )

private

operator=() [12/47]

CMSInFile_Base& CMSInFile_Base::operator= ( const CMSInFile_Base &  )

private

operator=() [13/47]

CMSIon& CMSIon::operator= ( const CMSIon &  value )

private

operator=() [14/47]

CMSIon_Base& CMSIon_Base::operator= ( const CMSIon_Base &  )

private

operator=() [15/47]

CMSIonAnnot& CMSIonAnnot::operator= ( const CMSIonAnnot &  value )

private

operator=() [16/47]

CMSIonAnnot_Base& CMSIonAnnot_Base::operator= ( const CMSIonAnnot_Base &  )

private

operator=() [17/47]

CMSIterativeSettings& CMSIterativeSettings::operator= ( const CMSIterativeSettings &  value )

private

operator=() [18/47]

CMSIterativeSettings_Base& CMSIterativeSettings_Base::operator= ( const CMSIterativeSettings_Base &  )

private

operator=() [19/47]

CMSLibrarySettings& CMSLibrarySettings::operator= ( const CMSLibrarySettings &  value )

private

operator=() [20/47]

CMSLibrarySettings_Base& CMSLibrarySettings_Base::operator= ( const CMSLibrarySettings_Base &  )

private

operator=() [21/47]

CMSMassSet& CMSMassSet::operator= ( const CMSMassSet &  value )

private

operator=() [22/47]

CMSMassSet_Base& CMSMassSet_Base::operator= ( const CMSMassSet_Base &  )

private

operator=() [23/47]

CMSModHit& CMSModHit::operator= ( const CMSModHit &  value )

private

operator=() [24/47]

CMSModHit_Base& CMSModHit_Base::operator= ( const CMSModHit_Base &  )

private

operator=() [25/47]

CMSModSpec& CMSModSpec::operator= ( const CMSModSpec &  value )

private

operator=() [26/47]

CMSModSpec_Base& CMSModSpec_Base::operator= ( const CMSModSpec_Base &  )

private

operator=() [27/47]

CMSModSpecSet_Base& CMSModSpecSet_Base::operator= ( const CMSModSpecSet_Base &  )

private

operator=() [28/47]

CMSMZHit& CMSMZHit::operator= ( const CMSMZHit &  value )

private

operator=() [29/47]

CMSMZHit_Base& CMSMZHit_Base::operator= ( const CMSMZHit_Base &  )

private

operator=() [30/47]

CMSOutFile& CMSOutFile::operator= ( const CMSOutFile &  value )

private

operator=() [31/47]

CMSOutFile_Base& CMSOutFile_Base::operator= ( const CMSOutFile_Base &  )

private

operator=() [32/47]

CMSPepHit& CMSPepHit::operator= ( const CMSPepHit &  value )

private

operator=() [33/47]

CMSPepHit_Base& CMSPepHit_Base::operator= ( const CMSPepHit_Base &  )

private

operator=() [34/47]

CMSRequest_Base& CMSRequest_Base::operator= ( const CMSRequest_Base &  )

private

operator=() [35/47]

CMSResponse_Base& CMSResponse_Base::operator= ( const CMSResponse_Base &  )

private

operator=() [36/47]

CMSScoreSet& CMSScoreSet::operator= ( const CMSScoreSet &  value )

private

operator=() [37/47]

CMSScoreSet_Base& CMSScoreSet_Base::operator= ( const CMSScoreSet_Base &  )

private

operator=() [38/47]

CMSSearch_Base& CMSSearch_Base::operator= ( const CMSSearch_Base &  )

private

operator=() [39/47]

CMSSearchSettings_Base& CMSSearchSettings_Base::operator= ( const CMSSearchSettings_Base &  )

private

operator=() [40/47]

CMSSearchSettingsSet& CMSSearchSettingsSet::operator= ( const CMSSearchSettingsSet &  value )

private

operator=() [41/47]

CMSSearchSettingsSet_Base& CMSSearchSettingsSet_Base::operator= ( const CMSSearchSettingsSet_Base &  )

private

operator=() [42/47]

CMSSpectrum& CMSSpectrum::operator= ( const CMSSpectrum &  value )

private

operator=() [43/47]

CMSSpectrum_Base& CMSSpectrum_Base::operator= ( const CMSSpectrum_Base &  )

private

operator=() [44/47]

CMSSpectrumset& CMSSpectrumset::operator= ( const CMSSpectrumset &  value )

private

operator=() [45/47]

CMSSpectrumset_Base& CMSSpectrumset_Base::operator= ( const CMSSpectrumset_Base &  )

private

operator=() [46/47]

CNameValue& CNameValue::operator= ( const CNameValue &  value )

private

operator=() [47/47]

CNameValue_Base& CNameValue_Base::operator= ( const CNameValue_Base &  )

private

Reset() [1/27]

void CMSBioseq_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 65 of file MSBioseq_.cpp.

References CMSBioseq_Base::ResetOid(), and CMSBioseq_Base::ResetSeq().

Reset() [2/27]

void CMSBioseqSet_Base::Reset

(

void

)

Reset data member.

Definition at line 51 of file MSBioseqSet_.cpp.

References CMSBioseqSet_Base::m_data, and CMSBioseqSet_Base::m_set_State.

Reset() [3/27]

void CMSChargeHandle_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 50 of file MSChargeHandle_.cpp.

References CMSChargeHandle_Base::ResetCalccharge(), CMSChargeHandle_Base::ResetCalcplusone(), CMSChargeHandle_Base::ResetConsidermult(), CMSChargeHandle_Base::ResetMaxcharge(), CMSChargeHandle_Base::ResetMaxproductcharge(), CMSChargeHandle_Base::ResetMincharge(), CMSChargeHandle_Base::ResetNegative(), CMSChargeHandle_Base::ResetPlusone(), and CMSChargeHandle_Base::ResetProdlesspre().

Reset() [4/27]

void CMSHits_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 102 of file MSHits_.cpp.

References CMSHits_Base::ResetCharge(), CMSHits_Base::ResetEvalue(), CMSHits_Base::ResetLibaccession(), CMSHits_Base::ResetMass(), CMSHits_Base::ResetMods(), CMSHits_Base::ResetMzhits(), CMSHits_Base::ResetOid(), CMSHits_Base::ResetPephits(), CMSHits_Base::ResetPepstart(), CMSHits_Base::ResetPepstop(), CMSHits_Base::ResetPepstring(), CMSHits_Base::ResetProtlength(), CMSHits_Base::ResetPvalue(), CMSHits_Base::ResetScores(), and CMSHits_Base::ResetTheomass().

Reset() [5/27]

void CMSHitSet_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 70 of file MSHitSet_.cpp.

References CMSHitSet_Base::ResetError(), CMSHitSet_Base::ResetHits(), CMSHitSet_Base::ResetIds(), CMSHitSet_Base::ResetNamevalue(), CMSHitSet_Base::ResetNumber(), CMSHitSet_Base::ResetSettingid(), and CMSHitSet_Base::ResetUserannotation().

Reset() [6/27]

void CMSImmonium_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 62 of file MSImmonium_.cpp.

References CMSImmonium_Base::ResetParent(), and CMSImmonium_Base::ResetProduct().

Reset() [7/27]

void CMSInFile_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 56 of file MSInFile_.cpp.

References CMSInFile_Base::ResetInfile(), and CMSInFile_Base::ResetInfiletype().

Reset() [8/27]

void CMSIon_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 74 of file MSIon_.cpp.

References CMSIon_Base::ResetImmonium(), CMSIon_Base::ResetInternal(), CMSIon_Base::ResetIsotope(), and CMSIon_Base::ResetNeutralloss().

Reset() [9/27]

void CMSIonAnnot_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 50 of file MSIonAnnot_.cpp.

References CMSIonAnnot_Base::ResetMassdiff(), CMSIonAnnot_Base::ResetMissingisotope(), and CMSIonAnnot_Base::ResetSuspect().

Reset() [10/27]

void CMSIterativeSettings_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 50 of file MSIterativeSettings_.cpp.

References CMSIterativeSettings_Base::ResetReplacethresh(), CMSIterativeSettings_Base::ResetResearchthresh(), and CMSIterativeSettings_Base::ResetSubsetthresh().

Reset() [11/27]

void CMSLibrarySettings_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 56 of file MSLibrarySettings_.cpp.

References CMSLibrarySettings_Base::ResetLibnames(), CMSLibrarySettings_Base::ResetPresearch(), CMSLibrarySettings_Base::ResetQtofscore(), CMSLibrarySettings_Base::ResetUseomssascore(), and CMSLibrarySettings_Base::ResetUsereplicatescore().

Reset() [12/27]

void CMSMassSet_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 50 of file MSMassSet_.cpp.

References CMSMassSet_Base::ResetAveragemass(), CMSMassSet_Base::ResetMonomass(), and CMSMassSet_Base::ResetN15mass().

Reset() [13/27]

void CMSModHit_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 50 of file MSModHit_.cpp.

References CMSModHit_Base::ResetModtype(), and CMSModHit_Base::ResetSite().

Reset() [14/27]

void CMSModSpec_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 86 of file MSModSpec_.cpp.

References CMSModSpec_Base::ResetAveragemass(), CMSModSpec_Base::ResetMod(), CMSModSpec_Base::ResetMonomass(), CMSModSpec_Base::ResetN15mass(), CMSModSpec_Base::ResetName(), CMSModSpec_Base::ResetNeutralloss(), CMSModSpec_Base::ResetPsi_ms(), CMSModSpec_Base::ResetResidues(), CMSModSpec_Base::ResetType(), and CMSModSpec_Base::ResetUnimod().

Reset() [15/27]

void CMSModSpecSet_Base::Reset

(

void

)

Reset data member.

Definition at line 51 of file MSModSpecSet_.cpp.

References CMSModSpecSet_Base::m_data, and CMSModSpecSet_Base::m_set_State.

Reset() [16/27]

void CMSMZHit_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 86 of file MSMZHit_.cpp.

References CMSMZHit_Base::ResetAnnotation(), CMSMZHit_Base::ResetCharge(), CMSMZHit_Base::ResetIndex(), CMSMZHit_Base::ResetIon(), CMSMZHit_Base::ResetMoreion(), CMSMZHit_Base::ResetMz(), and CMSMZHit_Base::ResetNumber().

Reset() [17/27]

void CMSOutFile_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 56 of file MSOutFile_.cpp.

References CMSOutFile_Base::ResetIncluderequest(), CMSOutFile_Base::ResetOutfile(), and CMSOutFile_Base::ResetOutfiletype().

Reset() [18/27]

void CMSPepHit_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 74 of file MSPepHit_.cpp.

References CMSPepHit_Base::ResetAccession(), CMSPepHit_Base::ResetDefline(), CMSPepHit_Base::ResetGi(), CMSPepHit_Base::ResetOid(), CMSPepHit_Base::ResetPepstart(), CMSPepHit_Base::ResetPepstop(), CMSPepHit_Base::ResetProtlength(), CMSPepHit_Base::ResetReversed(), CMSPepHit_Base::ResetStart(), and CMSPepHit_Base::ResetStop().

Reset() [19/27]

void CMSRequest_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 122 of file MSRequest_.cpp.

References CMSRequest_Base::ResetModset(), CMSRequest_Base::ResetMoresettings(), CMSRequest_Base::ResetRid(), CMSRequest_Base::ResetSettings(), and CMSRequest_Base::ResetSpectra().

Reset() [20/27]

void CMSResponse_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 93 of file MSResponse_.cpp.

References CMSResponse_Base::ResetBioseqs(), CMSResponse_Base::ResetDbversion(), CMSResponse_Base::ResetEmail(), CMSResponse_Base::ResetError(), CMSResponse_Base::ResetHitsets(), CMSResponse_Base::ResetRid(), CMSResponse_Base::ResetScale(), and CMSResponse_Base::ResetVersion().

Reset() [21/27]

void CMSScoreSet_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 56 of file MSScoreSet_.cpp.

References CMSScoreSet_Base::ResetName(), and CMSScoreSet_Base::ResetValue().

Reset() [22/27]

void CMSSearch_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 64 of file MSSearch_.cpp.

References CMSSearch_Base::ResetRequest(), and CMSSearch_Base::ResetResponse().

Reset() [23/27]

void CMSSearchSettings_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 179 of file MSSearchSettings_.cpp.

References CMSSearchSettings_Base::ResetAutomassadjust(), CMSSearchSettings_Base::ResetChargehandling(), CMSSearchSettings_Base::ResetCuthi(), CMSSearchSettings_Base::ResetCutinc(), CMSSearchSettings_Base::ResetCutlo(), CMSSearchSettings_Base::ResetCutoff(), CMSSearchSettings_Base::ResetDb(), CMSSearchSettings_Base::ResetDoublenum(), CMSSearchSettings_Base::ResetDoublewin(), CMSSearchSettings_Base::ResetEnzyme(), CMSSearchSettings_Base::ResetExactmass(), CMSSearchSettings_Base::ResetFixed(), CMSSearchSettings_Base::ResetHitlistlen(), CMSSearchSettings_Base::ResetInfiles(), CMSSearchSettings_Base::ResetIonstosearch(), CMSSearchSettings_Base::ResetIterativesettings(), CMSSearchSettings_Base::ResetLibsearchsettings(), CMSSearchSettings_Base::ResetLomasscutoff(), CMSSearchSettings_Base::ResetMaxmods(), CMSSearchSettings_Base::ResetMaxnoenzyme(), CMSSearchSettings_Base::ResetMaxproductions(), CMSSearchSettings_Base::ResetMinhit(), CMSSearchSettings_Base::ResetMinnoenzyme(), CMSSearchSettings_Base::ResetMinspectra(), CMSSearchSettings_Base::ResetMissedcleave(), CMSSearchSettings_Base::ResetMsmsppm(), CMSSearchSettings_Base::ResetMsmstol(), CMSSearchSettings_Base::ResetNmethionine(), CMSSearchSettings_Base::ResetNocorrelationscore(), CMSSearchSettings_Base::ResetNoprolineions(), CMSSearchSettings_Base::ResetNumisotopes(), CMSSearchSettings_Base::ResetOthersettings(), CMSSearchSettings_Base::ResetOutfiles(), CMSSearchSettings_Base::ResetPepppm(), CMSSearchSettings_Base::ResetPeptol(), CMSSearchSettings_Base::ResetPrecursorcull(), CMSSearchSettings_Base::ResetPrecursorsearchtype(), CMSSearchSettings_Base::ResetProbfollowingion(), CMSSearchSettings_Base::ResetProductsearchtype(), CMSSearchSettings_Base::ResetPseudocount(), CMSSearchSettings_Base::ResetReportedhitcount(), CMSSearchSettings_Base::ResetReversesearch(), CMSSearchSettings_Base::ResetScale(), CMSSearchSettings_Base::ResetSearchb1(), CMSSearchSettings_Base::ResetSearchctermproduct(), CMSSearchSettings_Base::ResetSettingid(), CMSSearchSettings_Base::ResetSinglenum(), CMSSearchSettings_Base::ResetSinglewin(), CMSSearchSettings_Base::ResetTaxids(), CMSSearchSettings_Base::ResetTophitnum(), CMSSearchSettings_Base::ResetUsermods(), CMSSearchSettings_Base::ResetVariable(), and CMSSearchSettings_Base::ResetZdep().

Reset() [24/27]

void CMSSearchSettingsSet_Base::Reset

(

void

)

Reset data member.

Definition at line 51 of file MSSearchSettingsSet_.cpp.

References CMSSearchSettingsSet_Base::m_data, and CMSSearchSettingsSet_Base::m_set_State.

Reset() [25/27]

void CMSSpectrum_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 81 of file MSSpectrum_.cpp.

References CMSSpectrum_Base::ResetAbundance(), CMSSpectrum_Base::ResetCharge(), CMSSpectrum_Base::ResetIds(), CMSSpectrum_Base::ResetIscale(), CMSSpectrum_Base::ResetMz(), CMSSpectrum_Base::ResetNamevalue(), CMSSpectrum_Base::ResetNumber(), and CMSSpectrum_Base::ResetPrecursormz().

Reset() [26/27]

void CMSSpectrumset_Base::Reset

(

void

)

Reset data member.

Definition at line 51 of file MSSpectrumset_.cpp.

References CMSSpectrumset_Base::m_data, and CMSSpectrumset_Base::m_set_State.

Reset() [27/27]

void CNameValue_Base::Reset ( void  )

virtual

Reset the whole object.

Definition at line 62 of file NameValue_.cpp.

References CNameValue_Base::ResetName(), and CNameValue_Base::ResetValue().

ResetAbundance()

void CMSSpectrum_Base::ResetAbundance

(

void

)

Reset Abundance data member.

Definition at line 63 of file MSSpectrum_.cpp.

References CMSSpectrum_Base::m_Abundance, and CMSSpectrum_Base::m_set_State.

Referenced by CMSSpectrum_Base::Reset().

ResetAccession()

void CMSPepHit_Base::ResetAccession

(

void

)

Reset Accession data member.

Definition at line 50 of file MSPepHit_.cpp.

References CMSPepHit_Base::m_Accession, and CMSPepHit_Base::m_set_State.

Referenced by CMSPepHit_Base::Reset().

ResetAnnotation()

void CMSMZHit_Base::ResetAnnotation

(

void

)

Reset Annotation data member.

Definition at line 69 of file MSMZHit_.cpp.

References CMSMZHit_Base::m_Annotation.

Referenced by CMSMZHit_Base::Reset().

ResetAutomassadjust()

void CMSSearchSettings_Base::ResetAutomassadjust ( void  )

inline

Reset Automassadjust data member.

Definition at line 4154 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Automassadjust, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetAveragemass() [1/2]

void CMSMassSet_Base::ResetAveragemass ( void  )

inline

Reset Averagemass data member.

Definition at line 294 of file MSMassSet_.hpp.

References CMSMassSet_Base::m_Averagemass, and CMSMassSet_Base::m_set_State.

Referenced by CMSMassSet_Base::Reset().

ResetAveragemass() [2/2]

void CMSModSpec_Base::ResetAveragemass ( void  )

inline

Reset Averagemass data member.

Definition at line 732 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_Averagemass, and CMSModSpec_Base::m_set_State.

Referenced by CMSModSpec_Base::Reset().

ResetBioseqs()

void CMSResponse_Base::ResetBioseqs

(

void

)

Reset Bioseqs data member.

Definition at line 76 of file MSResponse_.cpp.

References CMSResponse_Base::m_Bioseqs.

Referenced by CMSResponse_Base::Reset().

ResetCalccharge()

void CMSChargeHandle_Base::ResetCalccharge ( void  )

inline

Reset Calccharge data member.

Definition at line 569 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_Calccharge, and CMSChargeHandle_Base::m_set_State.

Referenced by CMSChargeHandle_Base::Reset(), and CMSChargeHandle_Base::SetDefaultCalccharge().

ResetCalcplusone()

void CMSChargeHandle_Base::ResetCalcplusone ( void  )

inline

Reset Calcplusone data member.

Definition at line 519 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_Calcplusone, and CMSChargeHandle_Base::m_set_State.

Referenced by CMSChargeHandle_Base::Reset(), and CMSChargeHandle_Base::SetDefaultCalcplusone().

ResetCharge() [1/3]

void CMSHits_Base::ResetCharge ( void  )

inline

Reset Charge data member.

Definition at line 828 of file MSHits_.hpp.

References CMSHits_Base::m_Charge, and CMSHits_Base::m_set_State.

Referenced by CMSHits_Base::Reset().

ResetCharge() [2/3]

void CMSMZHit_Base::ResetCharge ( void  )

inline

Reset Charge data member.

Definition at line 470 of file MSMZHit_.hpp.

References CMSMZHit_Base::m_Charge, and CMSMZHit_Base::m_set_State.

Referenced by CMSMZHit_Base::Reset().

ResetCharge() [3/3]

void CMSSpectrum_Base::ResetCharge

(

void

)

Reset Charge data member.

Definition at line 51 of file MSSpectrum_.cpp.

References CMSSpectrum_Base::m_Charge, and CMSSpectrum_Base::m_set_State.

Referenced by CMSSpectrum_Base::Reset().

ResetChargehandling()

void CMSSearchSettings_Base::ResetChargehandling

(

void

)

Reset Chargehandling data member.

Definition at line 87 of file MSSearchSettings_.cpp.

References CMSSearchSettings_Base::m_Chargehandling.

Referenced by CMSSearchSettings_Base::Reset().

ResetConsidermult()

void CMSChargeHandle_Base::ResetConsidermult ( void  )

inline

Reset Considermult data member.

Definition at line 719 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_Considermult, and CMSChargeHandle_Base::m_set_State.

Referenced by CMSChargeHandle_Base::Reset(), and CMSChargeHandle_Base::SetDefaultConsidermult().

ResetCuthi()

void CMSSearchSettings_Base::ResetCuthi ( void  )

inline

Reset Cuthi data member.

Definition at line 2664 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Cuthi, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetCutinc()

void CMSSearchSettings_Base::ResetCutinc ( void  )

inline

Reset Cutinc data member.

Definition at line 2711 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Cutinc, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetCutlo()

void CMSSearchSettings_Base::ResetCutlo ( void  )

inline

Reset Cutlo data member.

Definition at line 2617 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Cutlo, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetCutoff()

void CMSSearchSettings_Base::ResetCutoff ( void  )

inline

Reset Cutoff data member.

Definition at line 2570 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Cutoff, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetDb()

void CMSSearchSettings_Base::ResetDb

(

void

)

Reset Db data member.

Definition at line 75 of file MSSearchSettings_.cpp.

References CMSSearchSettings_Base::m_Db, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetDbversion()

void CMSResponse_Base::ResetDbversion ( void  )

inline

Reset Dbversion data member.

Definition at line 729 of file MSResponse_.hpp.

References CMSResponse_Base::m_Dbversion, and CMSResponse_Base::m_set_State.

Referenced by CMSResponse_Base::Reset().

ResetDefline()

void CMSPepHit_Base::ResetDefline

(

void

)

Reset Defline data member.

Definition at line 56 of file MSPepHit_.cpp.

References CMSPepHit_Base::m_Defline, and CMSPepHit_Base::m_set_State.

Referenced by CMSPepHit_Base::Reset().

ResetDoublenum()

void CMSSearchSettings_Base::ResetDoublenum ( void  )

inline

Reset Doublenum data member.

Definition at line 2899 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Doublenum, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetDoublewin()

void CMSSearchSettings_Base::ResetDoublewin ( void  )

inline

Reset Doublewin data member.

Definition at line 2805 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Doublewin, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetEmail()

void CMSResponse_Base::ResetEmail

(

void

)

Reset Email data member.

Definition at line 70 of file MSResponse_.cpp.

References CMSResponse_Base::m_Email, and CMSResponse_Base::m_set_State.

Referenced by CMSResponse_Base::Reset().

ResetEnzyme()

void CMSSearchSettings_Base::ResetEnzyme ( void  )

inline

Reset Enzyme data member.

Definition at line 2996 of file MSSearchSettings_.hpp.

References int, CMSSearchSettings_Base::m_Enzyme, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetError() [1/2]

void CMSHitSet_Base::ResetError ( void  )

inline

Reset Error data member.

Definition at line 456 of file MSHitSet_.hpp.

References int, CMSHitSet_Base::m_Error, and CMSHitSet_Base::m_set_State.

Referenced by CMSHitSet_Base::Reset().

ResetError() [2/2]

void CMSResponse_Base::ResetError ( void  )

inline

Reset Error data member.

Definition at line 588 of file MSResponse_.hpp.

References int, CMSResponse_Base::m_Error, and CMSResponse_Base::m_set_State.

Referenced by CMSResponse_Base::Reset().

ResetEvalue()

void CMSHits_Base::ResetEvalue ( void  )

inline

Reset Evalue data member.

Definition at line 734 of file MSHits_.hpp.

References CMSHits_Base::m_Evalue, and CMSHits_Base::m_set_State.

Referenced by CMSHits_Base::Reset().

ResetExactmass()

void CMSSearchSettings_Base::ResetExactmass ( void  )

inline

Reset Exactmass data member.

Definition at line 3801 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Exactmass, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetFixed()

void CMSSearchSettings_Base::ResetFixed

(

void

)

Reset Fixed data member.

Definition at line 63 of file MSSearchSettings_.cpp.

References CMSSearchSettings_Base::m_Fixed, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetGi()

void CMSPepHit_Base::ResetGi ( void  )

inline

Reset Gi data member.

Definition at line 640 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_Gi, and CMSPepHit_Base::m_set_State.

Referenced by CMSPepHit_Base::Reset().

ResetHitlistlen()

void CMSSearchSettings_Base::ResetHitlistlen ( void  )

inline

Reset Hitlistlen data member.

Definition at line 3090 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Hitlistlen, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset(), and CMSSearchSettings_Base::SetDefaultHitlistlen().

ResetHits()

void CMSHitSet_Base::ResetHits

(

void

)

Reset Hits data member.

Definition at line 52 of file MSHitSet_.cpp.

References CMSHitSet_Base::m_Hits, and CMSHitSet_Base::m_set_State.

Referenced by CMSHitSet_Base::Reset().

ResetHitsets()

void CMSResponse_Base::ResetHitsets

(

void

)

Reset Hitsets data member.

Definition at line 52 of file MSResponse_.cpp.

References CMSResponse_Base::m_Hitsets, and CMSResponse_Base::m_set_State.

Referenced by CMSResponse_Base::Reset().

ResetIds() [1/2]

void CMSHitSet_Base::ResetIds

(

void

)

Reset Ids data member.

Definition at line 58 of file MSHitSet_.cpp.

References CMSHitSet_Base::m_Ids, and CMSHitSet_Base::m_set_State.

Referenced by CMSHitSet_Base::Reset().

ResetIds() [2/2]

void CMSSpectrum_Base::ResetIds

(

void

)

Reset Ids data member.

Definition at line 69 of file MSSpectrum_.cpp.

References CMSSpectrum_Base::m_Ids, and CMSSpectrum_Base::m_set_State.

Referenced by CMSSpectrum_Base::Reset().

ResetImmonium()

void CMSIon_Base::ResetImmonium

(

void

)

Reset Immonium data member.

Definition at line 57 of file MSIon_.cpp.

References CMSIon_Base::m_Immonium.

Referenced by CMSIon_Base::Reset().

ResetIncluderequest()

void CMSOutFile_Base::ResetIncluderequest ( void  )

inline

Reset Includerequest data member.

Definition at line 349 of file MSOutFile_.hpp.

References CMSOutFile_Base::m_Includerequest, and CMSOutFile_Base::m_set_State.

Referenced by CMSOutFile_Base::Reset().

ResetIndex()

void CMSMZHit_Base::ResetIndex ( void  )

inline

Reset Index data member.

Definition at line 611 of file MSMZHit_.hpp.

References CMSMZHit_Base::m_Index, and CMSMZHit_Base::m_set_State.

Referenced by CMSMZHit_Base::Reset().

ResetInfile()

void CMSInFile_Base::ResetInfile

(

void

)

Reset Infile data member.

Definition at line 50 of file MSInFile_.cpp.

References CMSInFile_Base::m_Infile, and CMSInFile_Base::m_set_State.

Referenced by CMSInFile_Base::Reset().

ResetInfiles()

void CMSSearchSettings_Base::ResetInfiles

(

void

)

Reset Infiles data member.

Definition at line 138 of file MSSearchSettings_.cpp.

References CMSSearchSettings_Base::m_Infiles, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetInfiletype()

void CMSInFile_Base::ResetInfiletype ( void  )

inline

Reset Infiletype data member.

Definition at line 261 of file MSInFile_.hpp.

References int, CMSInFile_Base::m_Infiletype, and CMSInFile_Base::m_set_State.

Referenced by CMSInFile_Base::Reset().

ResetInternal()

void CMSIon_Base::ResetInternal

(

void

)

Reset Internal data member.

Definition at line 51 of file MSIon_.cpp.

References CMSIon_Base::m_Internal, and CMSIon_Base::m_set_State.

Referenced by CMSIon_Base::Reset().

ResetIon()

void CMSMZHit_Base::ResetIon ( void  )

inline

Reset Ion data member.

Definition at line 423 of file MSMZHit_.hpp.

References int, CMSMZHit_Base::m_Ion, and CMSMZHit_Base::m_set_State.

Referenced by CMSMZHit_Base::Reset().

ResetIonstosearch()

void CMSSearchSettings_Base::ResetIonstosearch

(

void

)

Reset Ionstosearch data member.

Definition at line 57 of file MSSearchSettings_.cpp.

References CMSSearchSettings_Base::m_Ionstosearch, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetIscale()

void CMSSpectrum_Base::ResetIscale ( void  )

inline

Reset Iscale data member.

Definition at line 604 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_Iscale, and CMSSpectrum_Base::m_set_State.

Referenced by CMSSpectrum_Base::Reset().

ResetIsotope()

void CMSIon_Base::ResetIsotope ( void  )

inline

Reset Isotope data member.

Definition at line 349 of file MSIon_.hpp.

References int, CMSIon_Base::m_Isotope, and CMSIon_Base::m_set_State.

Referenced by CMSIon_Base::Reset().

ResetIterativesettings()

void CMSSearchSettings_Base::ResetIterativesettings

(

void

)

Reset Iterativesettings data member.

Definition at line 121 of file MSSearchSettings_.cpp.

References CMSSearchSettings_Base::m_Iterativesettings.

Referenced by CMSSearchSettings_Base::Reset().

ResetLibaccession()

void CMSHits_Base::ResetLibaccession

(

void

)

Reset Libaccession data member.

Definition at line 96 of file MSHits_.cpp.

References CMSHits_Base::m_Libaccession, and CMSHits_Base::m_set_State.

Referenced by CMSHits_Base::Reset().

ResetLibnames()

void CMSLibrarySettings_Base::ResetLibnames

(

void

)

Reset Libnames data member.

Definition at line 50 of file MSLibrarySettings_.cpp.

References CMSLibrarySettings_Base::m_Libnames, and CMSLibrarySettings_Base::m_set_State.

Referenced by CMSLibrarySettings_Base::Reset().

ResetLibsearchsettings()

void CMSSearchSettings_Base::ResetLibsearchsettings

(

void

)

Reset Libsearchsettings data member.

Definition at line 150 of file MSSearchSettings_.cpp.

References CMSSearchSettings_Base::m_Libsearchsettings.

Referenced by CMSSearchSettings_Base::Reset().

ResetLomasscutoff()

void CMSSearchSettings_Base::ResetLomasscutoff ( void  )

inline

Reset Lomasscutoff data member.

Definition at line 4201 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Lomasscutoff, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetMass()

void CMSHits_Base::ResetMass ( void  )

inline

Reset Mass data member.

Definition at line 972 of file MSHits_.hpp.

References CMSHits_Base::m_Mass, and CMSHits_Base::m_set_State.

Referenced by CMSHits_Base::Reset().

ResetMassdiff()

void CMSIonAnnot_Base::ResetMassdiff ( void  )

inline

Reset Massdiff data member.

Definition at line 297 of file MSIonAnnot_.hpp.

References CMSIonAnnot_Base::m_Massdiff, and CMSIonAnnot_Base::m_set_State.

Referenced by CMSIonAnnot_Base::Reset().

ResetMaxcharge()

void CMSChargeHandle_Base::ResetMaxcharge ( void  )

inline

Reset Maxcharge data member.

Definition at line 669 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_Maxcharge, and CMSChargeHandle_Base::m_set_State.

Referenced by CMSChargeHandle_Base::Reset(), and CMSChargeHandle_Base::SetDefaultMaxcharge().

ResetMaxmods()

void CMSSearchSettings_Base::ResetMaxmods ( void  )

inline

Reset Maxmods data member.

Definition at line 3384 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Maxmods, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset(), and CMSSearchSettings_Base::SetDefaultMaxmods().

ResetMaxnoenzyme()

void CMSSearchSettings_Base::ResetMaxnoenzyme ( void  )

inline

Reset Maxnoenzyme data member.

Definition at line 3751 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Maxnoenzyme, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset(), and CMSSearchSettings_Base::SetDefaultMaxnoenzyme().

ResetMaxproductcharge()

void CMSChargeHandle_Base::ResetMaxproductcharge ( void  )

inline

Reset Maxproductcharge data member.

Definition at line 816 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_Maxproductcharge, and CMSChargeHandle_Base::m_set_State.

Referenced by CMSChargeHandle_Base::Reset().

ResetMaxproductions()

void CMSSearchSettings_Base::ResetMaxproductions ( void  )

inline

Reset Maxproductions data member.

Definition at line 3651 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Maxproductions, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset(), and CMSSearchSettings_Base::SetDefaultMaxproductions().

ResetMincharge()

void CMSChargeHandle_Base::ResetMincharge ( void  )

inline

Reset Mincharge data member.

Definition at line 619 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_Mincharge, and CMSChargeHandle_Base::m_set_State.

Referenced by CMSChargeHandle_Base::Reset(), and CMSChargeHandle_Base::SetDefaultMincharge().

ResetMinhit()

void CMSSearchSettings_Base::ResetMinhit ( void  )

inline

Reset Minhit data member.

Definition at line 3234 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Minhit, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset(), and CMSSearchSettings_Base::SetDefaultMinhit().

ResetMinnoenzyme()

void CMSSearchSettings_Base::ResetMinnoenzyme ( void  )

inline

Reset Minnoenzyme data member.

Definition at line 3701 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Minnoenzyme, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset(), and CMSSearchSettings_Base::SetDefaultMinnoenzyme().

ResetMinspectra()

void CMSSearchSettings_Base::ResetMinspectra ( void  )

inline

Reset Minspectra data member.

Definition at line 3284 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Minspectra, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset(), and CMSSearchSettings_Base::SetDefaultMinspectra().

ResetMissedcleave()

void CMSSearchSettings_Base::ResetMissedcleave ( void  )

inline

Reset Missedcleave data member.

Definition at line 3043 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Missedcleave, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetMissingisotope()

void CMSIonAnnot_Base::ResetMissingisotope ( void  )

inline

Reset Missingisotope data member.

Definition at line 344 of file MSIonAnnot_.hpp.

References CMSIonAnnot_Base::m_Missingisotope, and CMSIonAnnot_Base::m_set_State.

Referenced by CMSIonAnnot_Base::Reset().

ResetMod()

void CMSModSpec_Base::ResetMod ( void  )

inline

Reset Mod data member.

Definition at line 544 of file MSModSpec_.hpp.

References int, CMSModSpec_Base::m_Mod, and CMSModSpec_Base::m_set_State.

Referenced by CMSModSpec_Base::Reset().

ResetMods()

void CMSHits_Base::ResetMods

(

void

)

Reset Mods data member.

Definition at line 72 of file MSHits_.cpp.

References CMSHits_Base::m_Mods, and CMSHits_Base::m_set_State.

Referenced by CMSHits_Base::Reset().

ResetModset()

void CMSRequest_Base::ResetModset

(

void

)

Reset Modset data member.

Definition at line 105 of file MSRequest_.cpp.

References CMSRequest_Base::m_Modset.

Referenced by CMSRequest_Base::Reset().

ResetModtype()

void CMSModHit_Base::ResetModtype ( void  )

inline

Reset Modtype data member.

Definition at line 260 of file MSModHit_.hpp.

References int, CMSModHit_Base::m_Modtype, and CMSModHit_Base::m_set_State.

Referenced by CMSModHit_Base::Reset().

ResetMonomass() [1/2]

void CMSMassSet_Base::ResetMonomass ( void  )

inline

Reset Monomass data member.

Definition at line 247 of file MSMassSet_.hpp.

References CMSMassSet_Base::m_Monomass, and CMSMassSet_Base::m_set_State.

Referenced by CMSMassSet_Base::Reset().

ResetMonomass() [2/2]

void CMSModSpec_Base::ResetMonomass ( void  )

inline

Reset Monomass data member.

Definition at line 685 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_Monomass, and CMSModSpec_Base::m_set_State.

Referenced by CMSModSpec_Base::Reset().

ResetMoreion()

void CMSMZHit_Base::ResetMoreion

(

void

)

Reset Moreion data member.

Definition at line 52 of file MSMZHit_.cpp.

References CMSMZHit_Base::m_Moreion.

Referenced by CMSMZHit_Base::Reset().

ResetMoresettings()

void CMSRequest_Base::ResetMoresettings

(

void

)

Reset Moresettings data member.

Definition at line 88 of file MSRequest_.cpp.

References CMSRequest_Base::m_Moresettings.

Referenced by CMSRequest_Base::Reset().

ResetMsmsppm()

void CMSSearchSettings_Base::ResetMsmsppm ( void  )

inline

Reset Msmsppm data member.

Definition at line 4460 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Msmsppm, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetMsmstol()

void CMSSearchSettings_Base::ResetMsmstol ( void  )

inline

Reset Msmstol data member.

Definition at line 2476 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Msmstol, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetMz() [1/2]

void CMSMZHit_Base::ResetMz ( void  )

inline

Reset Mz data member.

Definition at line 564 of file MSMZHit_.hpp.

References CMSMZHit_Base::m_Mz, and CMSMZHit_Base::m_set_State.

Referenced by CMSMZHit_Base::Reset().

ResetMz() [2/2]

void CMSSpectrum_Base::ResetMz

(

void

)

Reset Mz data member.

Definition at line 57 of file MSSpectrum_.cpp.

References CMSSpectrum_Base::m_Mz, and CMSSpectrum_Base::m_set_State.

Referenced by CMSSpectrum_Base::Reset().

ResetMzhits()

void CMSHits_Base::ResetMzhits

(

void

)

Reset Mzhits data member.

Definition at line 60 of file MSHits_.cpp.

References CMSHits_Base::m_Mzhits, and CMSHits_Base::m_set_State.

Referenced by CMSHits_Base::Reset().

ResetN15mass() [1/2]

void CMSMassSet_Base::ResetN15mass ( void  )

inline

Reset N15mass data member.

Definition at line 341 of file MSMassSet_.hpp.

References CMSMassSet_Base::m_N15mass, and CMSMassSet_Base::m_set_State.

Referenced by CMSMassSet_Base::Reset().

ResetN15mass() [2/2]

void CMSModSpec_Base::ResetN15mass ( void  )

inline

Reset N15mass data member.

Definition at line 779 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_N15mass, and CMSModSpec_Base::m_set_State.

Referenced by CMSModSpec_Base::Reset().

ResetName() [1/3]

void CMSModSpec_Base::ResetName

(

void

)

Reset Name data member.

Definition at line 51 of file MSModSpec_.cpp.

References CMSModSpec_Base::m_Name, and CMSModSpec_Base::m_set_State.

Referenced by CMSModSpec_Base::Reset().

ResetName() [2/3]

void CMSScoreSet_Base::ResetName

(

void

)

Reset Name data member.

Definition at line 50 of file MSScoreSet_.cpp.

References CMSScoreSet_Base::m_Name, and CMSScoreSet_Base::m_set_State.

Referenced by CMSScoreSet_Base::Reset().

ResetName() [3/3]

void CNameValue_Base::ResetName

(

void

)

Reset Name data member.

Definition at line 50 of file NameValue_.cpp.

References CNameValue_Base::m_Name, and CNameValue_Base::m_set_State.

Referenced by CNameValue_Base::Reset().

ResetNamevalue() [1/2]

void CMSHitSet_Base::ResetNamevalue

(

void

)

Reset Namevalue data member.

Definition at line 64 of file MSHitSet_.cpp.

References CMSHitSet_Base::m_Namevalue, and CMSHitSet_Base::m_set_State.

Referenced by CMSHitSet_Base::Reset().

ResetNamevalue() [2/2]

void CMSSpectrum_Base::ResetNamevalue

(

void

)

Reset Namevalue data member.

Definition at line 75 of file MSSpectrum_.cpp.

References CMSSpectrum_Base::m_Namevalue, and CMSSpectrum_Base::m_set_State.

Referenced by CMSSpectrum_Base::Reset().

ResetNegative()

void CMSChargeHandle_Base::ResetNegative ( void  )

inline

Reset Negative data member.

Definition at line 910 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_Negative, and CMSChargeHandle_Base::m_set_State.

Referenced by CMSChargeHandle_Base::Reset(), and CMSChargeHandle_Base::SetDefaultNegative().

ResetNeutralloss() [1/2]

void CMSIon_Base::ResetNeutralloss ( void  )

inline

Reset Neutralloss data member.

Definition at line 302 of file MSIon_.hpp.

References int, CMSIon_Base::m_Neutralloss, and CMSIon_Base::m_set_State.

Referenced by CMSIon_Base::Reset().

ResetNeutralloss() [2/2]

void CMSModSpec_Base::ResetNeutralloss

(

void

)

Reset Neutralloss data member.

Definition at line 63 of file MSModSpec_.cpp.

References CMSModSpec_Base::m_Neutralloss.

Referenced by CMSModSpec_Base::Reset().

ResetNmethionine()

void CMSSearchSettings_Base::ResetNmethionine ( void  )

inline

Reset Nmethionine data member.

Definition at line 4107 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Nmethionine, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetNocorrelationscore()

void CMSSearchSettings_Base::ResetNocorrelationscore ( void  )

inline

Reset Nocorrelationscore data member.

Definition at line 4013 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Nocorrelationscore, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetNoprolineions()

void CMSSearchSettings_Base::ResetNoprolineions

(

void

)

Reset Noprolineions data member.

Definition at line 167 of file MSSearchSettings_.cpp.

References CMSSearchSettings_Base::m_Noprolineions, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetNumber() [1/3]

void CMSHitSet_Base::ResetNumber ( void  )

inline

Reset Number data member.

Definition at line 409 of file MSHitSet_.hpp.

References CMSHitSet_Base::m_Number, and CMSHitSet_Base::m_set_State.

Referenced by CMSHitSet_Base::Reset().

ResetNumber() [2/3]

void CMSMZHit_Base::ResetNumber ( void  )

inline

Reset Number data member.

Definition at line 517 of file MSMZHit_.hpp.

References CMSMZHit_Base::m_Number, and CMSMZHit_Base::m_set_State.

Referenced by CMSMZHit_Base::Reset().

ResetNumber() [3/3]

void CMSSpectrum_Base::ResetNumber ( void  )

inline

Reset Number data member.

Definition at line 435 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_Number, and CMSSpectrum_Base::m_set_State.

Referenced by CMSSpectrum_Base::Reset().

ResetNumisotopes()

void CMSSearchSettings_Base::ResetNumisotopes ( void  )

inline

Reset Numisotopes data member.

Definition at line 4366 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Numisotopes, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetOid() [1/3]

void CMSBioseq_Base::ResetOid ( void  )

inline

Reset Oid data member.

Definition at line 212 of file MSBioseq_.hpp.

References CMSBioseq_Base::m_Oid, and CMSBioseq_Base::m_set_State.

Referenced by CMSBioseq_Base::Reset().

ResetOid() [2/3]

void CMSHits_Base::ResetOid ( void  )

inline

Reset Oid data member.

Definition at line 1232 of file MSHits_.hpp.

References CMSHits_Base::m_Oid, and CMSHits_Base::m_set_State.

Referenced by CMSHits_Base::Reset().

ResetOid() [3/3]

void CMSPepHit_Base::ResetOid ( void  )

inline

Reset Oid data member.

Definition at line 828 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_Oid, and CMSPepHit_Base::m_set_State.

Referenced by CMSPepHit_Base::Reset().

ResetOthersettings()

void CMSSearchSettings_Base::ResetOthersettings

(

void

)

Reset Othersettings data member.

Definition at line 173 of file MSSearchSettings_.cpp.

References CMSSearchSettings_Base::m_Othersettings, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetOutfile()

void CMSOutFile_Base::ResetOutfile

(

void

)

Reset Outfile data member.

Definition at line 50 of file MSOutFile_.cpp.

References CMSOutFile_Base::m_Outfile, and CMSOutFile_Base::m_set_State.

Referenced by CMSOutFile_Base::Reset().

ResetOutfiles()

void CMSSearchSettings_Base::ResetOutfiles

(

void

)

Reset Outfiles data member.

Definition at line 144 of file MSSearchSettings_.cpp.

References CMSSearchSettings_Base::m_Outfiles, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetOutfiletype()

void CMSOutFile_Base::ResetOutfiletype ( void  )

inline

Reset Outfiletype data member.

Definition at line 302 of file MSOutFile_.hpp.

References int, CMSOutFile_Base::m_Outfiletype, and CMSOutFile_Base::m_set_State.

Referenced by CMSOutFile_Base::Reset().

ResetParent()

void CMSImmonium_Base::ResetParent

(

void

)

Reset Parent data member.

Definition at line 50 of file MSImmonium_.cpp.

References CMSImmonium_Base::m_Parent, and CMSImmonium_Base::m_set_State.

Referenced by CMSImmonium_Base::Reset().

ResetPephits()

void CMSHits_Base::ResetPephits

(

void

)

Reset Pephits data member.

Definition at line 54 of file MSHits_.cpp.

References CMSHits_Base::m_Pephits, and CMSHits_Base::m_set_State.

Referenced by CMSHits_Base::Reset().

ResetPepppm()

void CMSSearchSettings_Base::ResetPepppm ( void  )

inline

Reset Pepppm data member.

Definition at line 4413 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Pepppm, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetPepstart() [1/2]

void CMSHits_Base::ResetPepstart

(

void

)

Reset Pepstart data member.

Definition at line 78 of file MSHits_.cpp.

References CMSHits_Base::m_Pepstart, and CMSHits_Base::m_set_State.

Referenced by CMSHits_Base::Reset().

ResetPepstart() [2/2]

void CMSPepHit_Base::ResetPepstart

(

void

)

Reset Pepstart data member.

Definition at line 62 of file MSPepHit_.cpp.

References CMSPepHit_Base::m_Pepstart, and CMSPepHit_Base::m_set_State.

Referenced by CMSPepHit_Base::Reset().

ResetPepstop() [1/2]

void CMSHits_Base::ResetPepstop

(

void

)

Reset Pepstop data member.

Definition at line 84 of file MSHits_.cpp.

References CMSHits_Base::m_Pepstop, and CMSHits_Base::m_set_State.

Referenced by CMSHits_Base::Reset().

ResetPepstop() [2/2]

void CMSPepHit_Base::ResetPepstop

(

void

)

Reset Pepstop data member.

Definition at line 68 of file MSPepHit_.cpp.

References CMSPepHit_Base::m_Pepstop, and CMSPepHit_Base::m_set_State.

Referenced by CMSPepHit_Base::Reset().

ResetPepstring()

void CMSHits_Base::ResetPepstring

(

void

)

Reset Pepstring data member.

Definition at line 66 of file MSHits_.cpp.

References CMSHits_Base::m_Pepstring, and CMSHits_Base::m_set_State.

Referenced by CMSHits_Base::Reset().

ResetPeptol()

void CMSSearchSettings_Base::ResetPeptol ( void  )

inline

Reset Peptol data member.

Definition at line 2429 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Peptol, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetPlusone()

void CMSChargeHandle_Base::ResetPlusone ( void  )

inline

Reset Plusone data member.

Definition at line 769 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_Plusone, and CMSChargeHandle_Base::m_set_State.

Referenced by CMSChargeHandle_Base::Reset().

ResetPrecursorcull()

void CMSSearchSettings_Base::ResetPrecursorcull ( void  )

inline

Reset Precursorcull data member.

Definition at line 3916 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Precursorcull, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetPrecursormz()

void CMSSpectrum_Base::ResetPrecursormz ( void  )

inline

Reset Precursormz data member.

Definition at line 507 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_Precursormz, and CMSSpectrum_Base::m_set_State.

Referenced by CMSSpectrum_Base::Reset().

ResetPrecursorsearchtype()

void CMSSearchSettings_Base::ResetPrecursorsearchtype ( void  )

inline

Reset Precursorsearchtype data member.

Definition at line 2310 of file MSSearchSettings_.hpp.

References int, CMSSearchSettings_Base::m_Precursorsearchtype, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetPresearch()

void CMSLibrarySettings_Base::ResetPresearch ( void  )

inline

Reset Presearch data member.

Definition at line 356 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::m_Presearch, and CMSLibrarySettings_Base::m_set_State.

Referenced by CMSLibrarySettings_Base::Reset().

ResetProbfollowingion()

void CMSSearchSettings_Base::ResetProbfollowingion ( void  )

inline

Reset Probfollowingion data member.

Definition at line 4060 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Probfollowingion, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetProdlesspre()

void CMSChargeHandle_Base::ResetProdlesspre ( void  )

inline

Reset Prodlesspre data member.

Definition at line 863 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_Prodlesspre, and CMSChargeHandle_Base::m_set_State.

Referenced by CMSChargeHandle_Base::Reset().

ResetProduct()

void CMSImmonium_Base::ResetProduct

(

void

)

Reset Product data member.

Definition at line 56 of file MSImmonium_.cpp.

References CMSImmonium_Base::m_Product, and CMSImmonium_Base::m_set_State.

Referenced by CMSImmonium_Base::Reset().

ResetProductsearchtype()

void CMSSearchSettings_Base::ResetProductsearchtype ( void  )

inline

Reset Productsearchtype data member.

Definition at line 2357 of file MSSearchSettings_.hpp.

References int, CMSSearchSettings_Base::m_Productsearchtype, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetProtlength() [1/2]

void CMSHits_Base::ResetProtlength ( void  )

inline

Reset Protlength data member.

Definition at line 1138 of file MSHits_.hpp.

References CMSHits_Base::m_Protlength, and CMSHits_Base::m_set_State.

Referenced by CMSHits_Base::Reset().

ResetProtlength() [2/2]

void CMSPepHit_Base::ResetProtlength ( void  )

inline

Reset Protlength data member.

Definition at line 781 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_Protlength, and CMSPepHit_Base::m_set_State.

Referenced by CMSPepHit_Base::Reset().

ResetPseudocount()

void CMSSearchSettings_Base::ResetPseudocount ( void  )

inline

Reset Pseudocount data member.

Definition at line 3501 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Pseudocount, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset(), and CMSSearchSettings_Base::SetDefaultPseudocount().

ResetPsi_ms()

void CMSModSpec_Base::ResetPsi_ms

(

void

)

Reset Psi_ms data member.

Definition at line 80 of file MSModSpec_.cpp.

References CMSModSpec_Base::m_Psi_ms, and CMSModSpec_Base::m_set_State.

Referenced by CMSModSpec_Base::Reset().

ResetPvalue()

void CMSHits_Base::ResetPvalue ( void  )

inline

Reset Pvalue data member.

Definition at line 781 of file MSHits_.hpp.

References CMSHits_Base::m_Pvalue, and CMSHits_Base::m_set_State.

Referenced by CMSHits_Base::Reset().

ResetQtofscore()

void CMSLibrarySettings_Base::ResetQtofscore ( void  )

inline

Reset Qtofscore data member.

Definition at line 497 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::m_Qtofscore, and CMSLibrarySettings_Base::m_set_State.

Referenced by CMSLibrarySettings_Base::Reset().

ResetReplacethresh()

void CMSIterativeSettings_Base::ResetReplacethresh ( void  )

inline

Reset Replacethresh data member.

Definition at line 344 of file MSIterativeSettings_.hpp.

References CMSIterativeSettings_Base::m_Replacethresh, and CMSIterativeSettings_Base::m_set_State.

Referenced by CMSIterativeSettings_Base::Reset().

ResetReportedhitcount()

void CMSSearchSettings_Base::ResetReportedhitcount ( void  )

inline

Reset Reportedhitcount data member.

Definition at line 4507 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Reportedhitcount, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetRequest()

void CMSSearch_Base::ResetRequest

(

void

)

Reset Request data member.

Definition at line 52 of file MSSearch_.cpp.

References CMSSearch_Base::m_Request, and CMSSearch_Base::m_set_State.

Referenced by CMSSearch_Base::Reset().

ResetResearchthresh()

void CMSIterativeSettings_Base::ResetResearchthresh ( void  )

inline

Reset Researchthresh data member.

Definition at line 250 of file MSIterativeSettings_.hpp.

References CMSIterativeSettings_Base::m_Researchthresh, and CMSIterativeSettings_Base::m_set_State.

Referenced by CMSIterativeSettings_Base::Reset().

ResetResidues()

void CMSModSpec_Base::ResetResidues

(

void

)

Reset Residues data member.

Definition at line 57 of file MSModSpec_.cpp.

References CMSModSpec_Base::m_Residues, and CMSModSpec_Base::m_set_State.

Referenced by CMSModSpec_Base::Reset().

ResetResponse()

void CMSSearch_Base::ResetResponse

(

void

)

Reset Response data member.

Definition at line 58 of file MSSearch_.cpp.

References CMSSearch_Base::m_Response, and CMSSearch_Base::m_set_State.

Referenced by CMSSearch_Base::Reset().

ResetReversed()

void CMSPepHit_Base::ResetReversed ( void  )

inline

Reset Reversed data member.

Definition at line 875 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_Reversed, and CMSPepHit_Base::m_set_State.

Referenced by CMSPepHit_Base::Reset().

ResetReversesearch()

void CMSSearchSettings_Base::ResetReversesearch ( void  )

inline

Reset Reversesearch data member.

Definition at line 4294 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Reversesearch, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset().

ResetRid() [1/2]

void CMSRequest_Base::ResetRid

(

void

)

Reset Rid data member.

Definition at line 82 of file MSRequest_.cpp.

References CMSRequest_Base::m_Rid, and CMSRequest_Base::m_set_State.

Referenced by CMSRequest_Base::Reset().

ResetRid() [2/2]

void CMSResponse_Base::ResetRid

(

void

)

Reset Rid data member.

Definition at line 58 of file MSResponse_.cpp.

References CMSResponse_Base::m_Rid, and CMSResponse_Base::m_set_State.

Referenced by CMSResponse_Base::Reset().

ResetScale() [1/2]

void CMSResponse_Base::ResetScale ( void  )

inline

Reset Scale data member.

Definition at line 491 of file MSResponse_.hpp.

References CMSResponse_Base::m_Scale, and CMSResponse_Base::m_set_State.

Referenced by CMSResponse_Base::Reset(), and CMSResponse_Base::SetDefaultScale().

ResetScale() [2/2]

void CMSSearchSettings_Base::ResetScale ( void  )

inline

Reset Scale data member.

Definition at line 3334 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Scale, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset(), and CMSSearchSettings_Base::SetDefaultScale().

ResetScores()

void CMSHits_Base::ResetScores

(

void

)

Reset Scores data member.

Definition at line 90 of file MSHits_.cpp.

References CMSHits_Base::m_Scores, and CMSHits_Base::m_set_State.

Referenced by CMSHits_Base::Reset().

ResetSearchb1()

void CMSSearchSettings_Base::ResetSearchb1 ( void  )

inline

Reset Searchb1 data member.

Definition at line 3551 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Searchb1, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset(), and CMSSearchSettings_Base::SetDefaultSearchb1().

ResetSearchctermproduct()

void CMSSearchSettings_Base::ResetSearchctermproduct ( void  )

inline

Reset Searchctermproduct data member.

Definition at line 3601 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Searchctermproduct, and CMSSearchSettings_Base::m_set_State.

Referenced by CMSSearchSettings_Base::Reset(), and CMSSearchSettings_Base::SetDefaultSearchctermproduct().

ResetSeq()

void CMSBioseq_Base::ResetSeq

(

void

)

Reset Seq data member.

Definition at line 51 of file MSBioseq_.cpp.

References CMSBioseq_Base::m_Seq.

Referenced by CMSBioseq_Base::CMSBioseq_Base(), CMSBioseq_Base::GetSeq(), CMSBioseq_Base::Reset(), and CMSBioseq_Base::SetSeq().

ResetSettingid() [1/2]

void CMSHitSet_Base::ResetSettingid ( void  )

inline

Reset Settingid data member.

Definition at line 578 of file MSHitSet_.hpp.

References CMSHitSet_Base::m_set_State, and CMSHitSet_Base::m_Settingid.

Referenced by CMSHitSet_Base::Reset().

ResetSettingid() [2/2]

void CMSSearchSettings_Base::ResetSettingid ( void  )

inline

Reset Settingid data member.

Definition at line 3848 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State, and CMSSearchSettings_Base::m_Settingid.

Referenced by CMSSearchSettings_Base::Reset().

ResetSettings()

void CMSRequest_Base::ResetSettings

(

void

)

Reset Settings data member.

Definition at line 68 of file MSRequest_.cpp.

References CMSRequest_Base::m_Settings.

Referenced by CMSRequest_Base::CMSRequest_Base(), CMSRequest_Base::GetSettings(), CMSRequest_Base::Reset(), and CMSRequest_Base::SetSettings().

ResetSinglenum()

void CMSSearchSettings_Base::ResetSinglenum ( void  )

inline

Reset Singlenum data member.

Definition at line 2852 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State, and CMSSearchSettings_Base::m_Singlenum.

Referenced by CMSSearchSettings_Base::Reset().

ResetSinglewin()

void CMSSearchSettings_Base::ResetSinglewin ( void  )

inline

Reset Singlewin data member.

Definition at line 2758 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State, and CMSSearchSettings_Base::m_Singlewin.

Referenced by CMSSearchSettings_Base::Reset().

ResetSite()

void CMSModHit_Base::ResetSite ( void  )

inline

Reset Site data member.

Definition at line 213 of file MSModHit_.hpp.

References CMSModHit_Base::m_set_State, and CMSModHit_Base::m_Site.

Referenced by CMSModHit_Base::Reset().

ResetSpectra()

void CMSRequest_Base::ResetSpectra

(

void

)

Reset Spectra data member.

Definition at line 54 of file MSRequest_.cpp.

References CMSRequest_Base::m_Spectra.

Referenced by CMSRequest_Base::CMSRequest_Base(), CMSRequest_Base::GetSpectra(), CMSRequest_Base::Reset(), and CMSRequest_Base::SetSpectra().

ResetStart()

void CMSPepHit_Base::ResetStart ( void  )

inline

Reset Start data member.

Definition at line 546 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_set_State, and CMSPepHit_Base::m_Start.

Referenced by CMSPepHit_Base::Reset().

ResetStop()

void CMSPepHit_Base::ResetStop ( void  )

inline

Reset Stop data member.

Definition at line 593 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_set_State, and CMSPepHit_Base::m_Stop.

Referenced by CMSPepHit_Base::Reset().

ResetSubsetthresh()

void CMSIterativeSettings_Base::ResetSubsetthresh ( void  )

inline

Reset Subsetthresh data member.

Definition at line 297 of file MSIterativeSettings_.hpp.

References CMSIterativeSettings_Base::m_set_State, and CMSIterativeSettings_Base::m_Subsetthresh.

Referenced by CMSIterativeSettings_Base::Reset().

ResetSuspect()

void CMSIonAnnot_Base::ResetSuspect ( void  )

inline

Reset Suspect data member.

Definition at line 250 of file MSIonAnnot_.hpp.

References CMSIonAnnot_Base::m_set_State, and CMSIonAnnot_Base::m_Suspect.

Referenced by CMSIonAnnot_Base::Reset().

ResetTaxids()

void CMSSearchSettings_Base::ResetTaxids

(

void

)

Reset Taxids data member.

Definition at line 81 of file MSSearchSettings_.cpp.

References CMSSearchSettings_Base::m_set_State, and CMSSearchSettings_Base::m_Taxids.

Referenced by CMSSearchSettings_Base::Reset().

ResetTheomass()

void CMSHits_Base::ResetTheomass ( void  )

inline

Reset Theomass data member.

Definition at line 1185 of file MSHits_.hpp.

References CMSHits_Base::m_set_State, and CMSHits_Base::m_Theomass.

Referenced by CMSHits_Base::Reset().

ResetTophitnum()

void CMSSearchSettings_Base::ResetTophitnum ( void  )

inline

Reset Tophitnum data member.

Definition at line 3187 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State, and CMSSearchSettings_Base::m_Tophitnum.

Referenced by CMSSearchSettings_Base::Reset().

ResetType()

void CMSModSpec_Base::ResetType ( void  )

inline

Reset Type data member.

Definition at line 591 of file MSModSpec_.hpp.

References int, CMSModSpec_Base::m_set_State, and CMSModSpec_Base::m_Type.

Referenced by CMSModSpec_Base::Reset().

ResetUnimod()

void CMSModSpec_Base::ResetUnimod ( void  )

inline

Reset Unimod data member.

Definition at line 872 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_set_State, and CMSModSpec_Base::m_Unimod.

Referenced by CMSModSpec_Base::Reset().

ResetUseomssascore()

void CMSLibrarySettings_Base::ResetUseomssascore ( void  )

inline

Reset Useomssascore data member.

Definition at line 403 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::m_set_State, and CMSLibrarySettings_Base::m_Useomssascore.

Referenced by CMSLibrarySettings_Base::Reset().

ResetUserannotation()

void CMSHitSet_Base::ResetUserannotation ( void  )

inline

Reset Userannotation data member.

Definition at line 625 of file MSHitSet_.hpp.

References int, CMSHitSet_Base::m_set_State, and CMSHitSet_Base::m_Userannotation.

Referenced by CMSHitSet_Base::Reset().

ResetUsereplicatescore()

void CMSLibrarySettings_Base::ResetUsereplicatescore ( void  )

inline

Reset Usereplicatescore data member.

Definition at line 450 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::m_set_State, and CMSLibrarySettings_Base::m_Usereplicatescore.

Referenced by CMSLibrarySettings_Base::Reset().

ResetUsermods()

void CMSSearchSettings_Base::ResetUsermods

(

void

)

Reset Usermods data member.

Definition at line 104 of file MSSearchSettings_.cpp.

References CMSSearchSettings_Base::m_Usermods.

Referenced by CMSSearchSettings_Base::Reset().

ResetValue() [1/2]

void CMSScoreSet_Base::ResetValue ( void  )

inline

Reset Value data member.

Definition at line 259 of file MSScoreSet_.hpp.

References CMSScoreSet_Base::m_set_State, and CMSScoreSet_Base::m_Value.

Referenced by CMSScoreSet_Base::Reset().

ResetValue() [2/2]

void CNameValue_Base::ResetValue

(

void

)

Reset Value data member.

Definition at line 56 of file NameValue_.cpp.

References CNameValue_Base::m_set_State, and CNameValue_Base::m_Value.

Referenced by CNameValue_Base::Reset().

ResetVariable()

void CMSSearchSettings_Base::ResetVariable

(

void

)

Reset Variable data member.

Definition at line 69 of file MSSearchSettings_.cpp.

References CMSSearchSettings_Base::m_set_State, and CMSSearchSettings_Base::m_Variable.

Referenced by CMSSearchSettings_Base::Reset().

ResetVersion()

void CMSResponse_Base::ResetVersion

(

void

)

Reset Version data member.

Definition at line 64 of file MSResponse_.cpp.

References CMSResponse_Base::m_set_State, and CMSResponse_Base::m_Version.

Referenced by CMSResponse_Base::Reset().

ResetZdep()

void CMSSearchSettings_Base::ResetZdep ( void  )

inline

Reset Zdep data member.

Definition at line 2523 of file MSSearchSettings_.hpp.

References int, CMSSearchSettings_Base::m_set_State, and CMSSearchSettings_Base::m_Zdep.

Referenced by CMSSearchSettings_Base::Reset().

Set() [1/4]

CMSBioseqSet_Base::Tdata & CMSBioseqSet_Base::Set ( void  )

inline

Assign a value to data member.

Returns

Reference to the data value.

Definition at line 170 of file MSBioseqSet_.hpp.

References CMSBioseqSet_Base::m_data, and CMSBioseqSet_Base::m_set_State.

Set() [2/4]

CMSModSpecSet_Base::Tdata & CMSModSpecSet_Base::Set ( void  )

inline

Assign a value to data member.

Returns

Reference to the data value.

Definition at line 171 of file MSModSpecSet_.hpp.

References CMSModSpecSet_Base::m_data, and CMSModSpecSet_Base::m_set_State.

Referenced by CMSModSpecSet::Append().

Set() [3/4]

CMSSearchSettingsSet_Base::Tdata & CMSSearchSettingsSet_Base::Set ( void  )

inline

Assign a value to data member.

Returns

Reference to the data value.

Definition at line 170 of file MSSearchSettingsSet_.hpp.

References CMSSearchSettingsSet_Base::m_data, and CMSSearchSettingsSet_Base::m_set_State.

Set() [4/4]

CMSSpectrumset_Base::Tdata & CMSSpectrumset_Base::Set ( void  )

inline

Assign a value to data member.

Returns

Reference to the data value.

Definition at line 171 of file MSSpectrumset_.hpp.

References CMSSpectrumset_Base::m_data, and CMSSpectrumset_Base::m_set_State.

Referenced by CSpectrumSet::LoadDTA(), CSpectrumSet::LoadMGF(), CSpectrumSet::LoadMultBlankLineDTA(), and CSpectrumSet::LoadMultDTA().

SetAbundance()

CMSSpectrum_Base::TAbundance & CMSSpectrum_Base::SetAbundance ( void  )

inline

Assign a value to Abundance data member.

Returns

Reference to the data value.

Definition at line 585 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_Abundance, and CMSSpectrum_Base::m_set_State.

SetAccession() [1/3]

void CMSPepHit_Base::SetAccession ( const TAccession &  value )

inline

Assign a value to Accession data member.

Parameters

value

Value to assign

Definition at line 696 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_Accession, CMSPepHit_Base::m_set_State, and rapidjson::value.

Referenced by CSearch< LEGACY, NHITS >::SetResult().

SetAccession() [2/3]

void CMSPepHit_Base::SetAccession ( CMSPepHit_Base::TAccession &&  value )

inline

Definition at line 703 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_Accession, CMSPepHit_Base::m_set_State, and rapidjson::value.

SetAccession() [3/3]

CMSPepHit_Base::TAccession & CMSPepHit_Base::SetAccession ( void  )

inline

Assign a value to Accession data member.

Returns

Reference to the data value.

Definition at line 710 of file MSPepHit_.hpp.

References CMSPepHit_Base::IsSetAccession(), CMSPepHit_Base::m_Accession, CMSPepHit_Base::m_set_State, and CSerialObject::UnassignedString().

SetAnnotation() [1/2]

void CMSMZHit_Base::SetAnnotation

(

CMSMZHit_Base::TAnnotation &

value

)

Assign a value to Annotation data member.

Parameters

value

Reference to value.

Definition at line 74 of file MSMZHit_.cpp.

References CMSMZHit_Base::m_Annotation, and rapidjson::value.

SetAnnotation() [2/2]

CMSMZHit_Base::TAnnotation & CMSMZHit_Base::SetAnnotation

(

void

)

Assign a value to Annotation data member.

Returns

Reference to the data value.

Definition at line 79 of file MSMZHit_.cpp.

References CMSMZHit_Base::m_Annotation.

SetAutomassadjust() [1/2]

void CMSSearchSettings_Base::SetAutomassadjust ( CMSSearchSettings_Base::TAutomassadjust  value )

inline

Assign a value to Automassadjust data member.

Parameters

value

Value to assign

Definition at line 4170 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Automassadjust, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetAutomassadjust() [2/2]

CMSSearchSettings_Base::TAutomassadjust & CMSSearchSettings_Base::SetAutomassadjust ( void  )

inline

Assign a value to Automassadjust data member.

Returns

Reference to the data value.

Definition at line 4177 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetAutomassadjust(), CMSSearchSettings_Base::m_Automassadjust, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetAveragemass() [1/4]

void CMSMassSet_Base::SetAveragemass ( CMSMassSet_Base::TAveragemass  value )

inline

Assign a value to Averagemass data member.

Parameters

value

Value to assign

Definition at line 310 of file MSMassSet_.hpp.

References CMSMassSet_Base::m_Averagemass, CMSMassSet_Base::m_set_State, and rapidjson::value.

SetAveragemass() [2/4]

void CMSModSpec_Base::SetAveragemass ( CMSModSpec_Base::TAveragemass  value )

inline

Assign a value to Averagemass data member.

Parameters

value

Value to assign

Definition at line 748 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_Averagemass, CMSModSpec_Base::m_set_State, and rapidjson::value.

SetAveragemass() [3/4]

CMSMassSet_Base::TAveragemass & CMSMassSet_Base::SetAveragemass ( void  )

inline

Assign a value to Averagemass data member.

Returns

Reference to the data value.

Definition at line 317 of file MSMassSet_.hpp.

References CMSMassSet_Base::IsSetAveragemass(), CMSMassSet_Base::m_Averagemass, CMSMassSet_Base::m_set_State, and CSerialObject::UnassignedByte().

SetAveragemass() [4/4]

CMSModSpec_Base::TAveragemass & CMSModSpec_Base::SetAveragemass ( void  )

inline

Assign a value to Averagemass data member.

Returns

Reference to the data value.

Definition at line 755 of file MSModSpec_.hpp.

References CMSModSpec_Base::IsSetAveragemass(), CMSModSpec_Base::m_Averagemass, CMSModSpec_Base::m_set_State, and CSerialObject::UnassignedByte().

SetBioseqs() [1/2]

void CMSResponse_Base::SetBioseqs

(

CMSResponse_Base::TBioseqs &

value

)

Assign a value to Bioseqs data member.

Parameters

value

Reference to value.

Definition at line 81 of file MSResponse_.cpp.

References CMSResponse_Base::m_Bioseqs, and rapidjson::value.

Referenced by CSearch< LEGACY, NHITS >::WriteBioseqs().

SetBioseqs() [2/2]

CMSResponse_Base::TBioseqs & CMSResponse_Base::SetBioseqs

(

void

)

Assign a value to Bioseqs data member.

Returns

Reference to the data value.

Definition at line 86 of file MSResponse_.cpp.

References CMSResponse_Base::m_Bioseqs.

SetCalccharge() [1/2]

void CMSChargeHandle_Base::SetCalccharge ( CMSChargeHandle_Base::TCalccharge  value )

inline

Assign a value to Calccharge data member.

Parameters

value

Value to assign

Definition at line 588 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_Calccharge, CMSChargeHandle_Base::m_set_State, and rapidjson::value.

SetCalccharge() [2/2]

CMSChargeHandle_Base::TCalccharge & CMSChargeHandle_Base::SetCalccharge ( void  )

inline

Assign a value to Calccharge data member.

Returns

Reference to the data value.

Definition at line 595 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::IsSetCalccharge(), CMSChargeHandle_Base::m_Calccharge, CMSChargeHandle_Base::m_set_State, and CSerialObject::UnassignedByte().

SetCalcplusone() [1/2]

void CMSChargeHandle_Base::SetCalcplusone ( CMSChargeHandle_Base::TCalcplusone  value )

inline

Assign a value to Calcplusone data member.

Parameters

value

Value to assign

Definition at line 538 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_Calcplusone, CMSChargeHandle_Base::m_set_State, and rapidjson::value.

SetCalcplusone() [2/2]

CMSChargeHandle_Base::TCalcplusone & CMSChargeHandle_Base::SetCalcplusone ( void  )

inline

Assign a value to Calcplusone data member.

Returns

Reference to the data value.

Definition at line 545 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::IsSetCalcplusone(), CMSChargeHandle_Base::m_Calcplusone, CMSChargeHandle_Base::m_set_State, and CSerialObject::UnassignedByte().

SetCharge() [1/5]

void CMSHits_Base::SetCharge ( CMSHits_Base::TCharge  value )

inline

Assign a value to Charge data member.

Parameters

value

Value to assign

Definition at line 844 of file MSHits_.hpp.

References CMSHits_Base::m_Charge, CMSHits_Base::m_set_State, and rapidjson::value.

Referenced by CSearch< LEGACY, NHITS >::SetResult().

SetCharge() [2/5]

void CMSMZHit_Base::SetCharge ( CMSMZHit_Base::TCharge  value )

inline

Assign a value to Charge data member.

Parameters

value

Value to assign

Definition at line 486 of file MSMZHit_.hpp.

References CMSMZHit_Base::m_Charge, CMSMZHit_Base::m_set_State, and rapidjson::value.

SetCharge() [3/5]

CMSHits_Base::TCharge & CMSHits_Base::SetCharge ( void  )

inline

Assign a value to Charge data member.

Returns

Reference to the data value.

Definition at line 851 of file MSHits_.hpp.

References CMSHits_Base::IsSetCharge(), CMSHits_Base::m_Charge, CMSHits_Base::m_set_State, and CSerialObject::UnassignedByte().

SetCharge() [4/5]

CMSMZHit_Base::TCharge & CMSMZHit_Base::SetCharge ( void  )

inline

Assign a value to Charge data member.

Returns

Reference to the data value.

Definition at line 493 of file MSMZHit_.hpp.

References CMSMZHit_Base::IsSetCharge(), CMSMZHit_Base::m_Charge, CMSMZHit_Base::m_set_State, and CSerialObject::UnassignedByte().

SetCharge() [5/5]

CMSSpectrum_Base::TCharge & CMSSpectrum_Base::SetCharge ( void  )

inline

Assign a value to Charge data member.

Returns

Reference to the data value.

Definition at line 488 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_Charge, and CMSSpectrum_Base::m_set_State.

SetChargehandling() [1/2]

void CMSSearchSettings_Base::SetChargehandling

(

CMSSearchSettings_Base::TChargehandling &

value

)

Assign a value to Chargehandling data member.

Parameters

value

Reference to value.

Definition at line 92 of file MSSearchSettings_.cpp.

References CMSSearchSettings_Base::m_Chargehandling, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetChargehandling() [2/2]

CMSSearchSettings_Base::TChargehandling & CMSSearchSettings_Base::SetChargehandling

(

void

)

Assign a value to Chargehandling data member.

Returns

Reference to the data value.

Definition at line 97 of file MSSearchSettings_.cpp.

References CMSSearchSettings_Base::m_Chargehandling.

SetConsidermult() [1/2]

void CMSChargeHandle_Base::SetConsidermult ( CMSChargeHandle_Base::TConsidermult  value )

inline

Assign a value to Considermult data member.

Parameters

value

Value to assign

Definition at line 738 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_Considermult, CMSChargeHandle_Base::m_set_State, and rapidjson::value.

SetConsidermult() [2/2]

CMSChargeHandle_Base::TConsidermult & CMSChargeHandle_Base::SetConsidermult ( void  )

inline

Assign a value to Considermult data member.

Returns

Reference to the data value.

Definition at line 745 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::IsSetConsidermult(), CMSChargeHandle_Base::m_Considermult, CMSChargeHandle_Base::m_set_State, and CSerialObject::UnassignedByte().

SetCuthi() [1/2]

void CMSSearchSettings_Base::SetCuthi ( CMSSearchSettings_Base::TCuthi  value )

inline

Assign a value to Cuthi data member.

Parameters

value

Value to assign

Definition at line 2680 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Cuthi, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetCuthi() [2/2]

CMSSearchSettings_Base::TCuthi & CMSSearchSettings_Base::SetCuthi ( void  )

inline

Assign a value to Cuthi data member.

Returns

Reference to the data value.

Definition at line 2687 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetCuthi(), CMSSearchSettings_Base::m_Cuthi, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetCutinc() [1/2]

void CMSSearchSettings_Base::SetCutinc ( CMSSearchSettings_Base::TCutinc  value )

inline

Assign a value to Cutinc data member.

Parameters

value

Value to assign

Definition at line 2727 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Cutinc, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetCutinc() [2/2]

CMSSearchSettings_Base::TCutinc & CMSSearchSettings_Base::SetCutinc ( void  )

inline

Assign a value to Cutinc data member.

Returns

Reference to the data value.

Definition at line 2734 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetCutinc(), CMSSearchSettings_Base::m_Cutinc, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetCutlo() [1/2]

void CMSSearchSettings_Base::SetCutlo ( CMSSearchSettings_Base::TCutlo  value )

inline

Assign a value to Cutlo data member.

Parameters

value

Value to assign

Definition at line 2633 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Cutlo, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetCutlo() [2/2]

CMSSearchSettings_Base::TCutlo & CMSSearchSettings_Base::SetCutlo ( void  )

inline

Assign a value to Cutlo data member.

Returns

Reference to the data value.

Definition at line 2640 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetCutlo(), CMSSearchSettings_Base::m_Cutlo, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetCutoff() [1/2]

void CMSSearchSettings_Base::SetCutoff ( CMSSearchSettings_Base::TCutoff  value )

inline

Assign a value to Cutoff data member.

Parameters

value

Value to assign

Definition at line 2586 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Cutoff, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetCutoff() [2/2]

CMSSearchSettings_Base::TCutoff & CMSSearchSettings_Base::SetCutoff ( void  )

inline

Assign a value to Cutoff data member.

Returns

Reference to the data value.

Definition at line 2593 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetCutoff(), CMSSearchSettings_Base::m_Cutoff, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetDb() [1/3]

void CMSSearchSettings_Base::SetDb ( const TDb &  value )

inline

Assign a value to Db data member.

Parameters

value

Value to assign

Definition at line 3149 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Db, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetDb() [2/3]

void CMSSearchSettings_Base::SetDb ( CMSSearchSettings_Base::TDb &&  value )

inline

Definition at line 3156 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Db, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

SetDb() [3/3]

CMSSearchSettings_Base::TDb & CMSSearchSettings_Base::SetDb ( void  )

inline

Assign a value to Db data member.

Returns

Reference to the data value.

Definition at line 3163 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetDb(), CMSSearchSettings_Base::m_Db, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedString().

SetDbversion() [1/2]

void CMSResponse_Base::SetDbversion ( CMSResponse_Base::TDbversion  value )

inline

Assign a value to Dbversion data member.

Parameters

value

Value to assign

Definition at line 745 of file MSResponse_.hpp.

References CMSResponse_Base::m_Dbversion, CMSResponse_Base::m_set_State, and rapidjson::value.

Referenced by CSearch< LEGACY, NHITS >::SetResult().

SetDbversion() [2/2]

CMSResponse_Base::TDbversion & CMSResponse_Base::SetDbversion ( void  )

inline

Assign a value to Dbversion data member.

Returns

Reference to the data value.

Definition at line 752 of file MSResponse_.hpp.

References CMSResponse_Base::IsSetDbversion(), CMSResponse_Base::m_Dbversion, CMSResponse_Base::m_set_State, and CSerialObject::UnassignedByte().

SetDefaultCalccharge()

void CMSChargeHandle_Base::SetDefaultCalccharge ( void  )

inline

Assign default value to Calccharge data member.

Definition at line 576 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::ResetCalccharge().

SetDefaultCalcplusone()

void CMSChargeHandle_Base::SetDefaultCalcplusone ( void  )

inline

Assign default value to Calcplusone data member.

Definition at line 526 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::ResetCalcplusone().

SetDefaultConsidermult()

void CMSChargeHandle_Base::SetDefaultConsidermult ( void  )

inline

Assign default value to Considermult data member.

Definition at line 726 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::ResetConsidermult().

SetDefaultHitlistlen()

void CMSSearchSettings_Base::SetDefaultHitlistlen ( void  )

inline

Assign default value to Hitlistlen data member.

Definition at line 3097 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::ResetHitlistlen().

SetDefaultMaxcharge()

void CMSChargeHandle_Base::SetDefaultMaxcharge ( void  )

inline

Assign default value to Maxcharge data member.

Definition at line 676 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::ResetMaxcharge().

SetDefaultMaxmods()

void CMSSearchSettings_Base::SetDefaultMaxmods ( void  )

inline

Assign default value to Maxmods data member.

Definition at line 3391 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::ResetMaxmods().

SetDefaultMaxnoenzyme()

void CMSSearchSettings_Base::SetDefaultMaxnoenzyme ( void  )

inline

Assign default value to Maxnoenzyme data member.

Definition at line 3758 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::ResetMaxnoenzyme().

SetDefaultMaxproductions()

void CMSSearchSettings_Base::SetDefaultMaxproductions ( void  )

inline

Assign default value to Maxproductions data member.

Definition at line 3658 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::ResetMaxproductions().

SetDefaultMincharge()

void CMSChargeHandle_Base::SetDefaultMincharge ( void  )

inline

Assign default value to Mincharge data member.

Definition at line 626 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::ResetMincharge().

SetDefaultMinhit()

void CMSSearchSettings_Base::SetDefaultMinhit ( void  )

inline

Assign default value to Minhit data member.

Definition at line 3241 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::ResetMinhit().

SetDefaultMinnoenzyme()

void CMSSearchSettings_Base::SetDefaultMinnoenzyme ( void  )

inline

Assign default value to Minnoenzyme data member.

Definition at line 3708 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::ResetMinnoenzyme().

SetDefaultMinspectra()

void CMSSearchSettings_Base::SetDefaultMinspectra ( void  )

inline

Assign default value to Minspectra data member.

Definition at line 3291 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::ResetMinspectra().

SetDefaultNegative()

void CMSChargeHandle_Base::SetDefaultNegative ( void  )

inline

Assign default value to Negative data member.

Definition at line 917 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::ResetNegative().

SetDefaultPseudocount()

void CMSSearchSettings_Base::SetDefaultPseudocount ( void  )

inline

Assign default value to Pseudocount data member.

Definition at line 3508 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::ResetPseudocount().

SetDefaultScale() [1/2]

void CMSResponse_Base::SetDefaultScale ( void  )

inline

Assign default value to Scale data member.

Definition at line 498 of file MSResponse_.hpp.

References CMSResponse_Base::ResetScale().

SetDefaultScale() [2/2]

void CMSSearchSettings_Base::SetDefaultScale ( void  )

inline

Assign default value to Scale data member.

Definition at line 3341 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::ResetScale().

SetDefaultSearchb1()

void CMSSearchSettings_Base::SetDefaultSearchb1 ( void  )

inline

Assign default value to Searchb1 data member.

Definition at line 3558 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::ResetSearchb1().

SetDefaultSearchctermproduct()

void CMSSearchSettings_Base::SetDefaultSearchctermproduct ( void  )

inline

Assign default value to Searchctermproduct data member.

Definition at line 3608 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::ResetSearchctermproduct().

SetDefline() [1/3]

void CMSPepHit_Base::SetDefline ( const TDefline &  value )

inline

Assign a value to Defline data member.

Parameters

value

Value to assign

Definition at line 743 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_Defline, CMSPepHit_Base::m_set_State, and rapidjson::value.

Referenced by CSearch< LEGACY, NHITS >::SetResult().

SetDefline() [2/3]

void CMSPepHit_Base::SetDefline ( CMSPepHit_Base::TDefline &&  value )

inline

Definition at line 750 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_Defline, CMSPepHit_Base::m_set_State, and rapidjson::value.

SetDefline() [3/3]

CMSPepHit_Base::TDefline & CMSPepHit_Base::SetDefline ( void  )

inline

Assign a value to Defline data member.

Returns

Reference to the data value.

Definition at line 757 of file MSPepHit_.hpp.

References CMSPepHit_Base::IsSetDefline(), CMSPepHit_Base::m_Defline, CMSPepHit_Base::m_set_State, and CSerialObject::UnassignedString().

SetDoublenum() [1/2]

void CMSSearchSettings_Base::SetDoublenum ( CMSSearchSettings_Base::TDoublenum  value )

inline

Assign a value to Doublenum data member.

Parameters

value

Value to assign

Definition at line 2915 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Doublenum, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by CSearch< LEGACY, NHITS >::Search(), and COMSSABase::SetSearchSettings().

SetDoublenum() [2/2]

CMSSearchSettings_Base::TDoublenum & CMSSearchSettings_Base::SetDoublenum ( void  )

inline

Assign a value to Doublenum data member.

Returns

Reference to the data value.

Definition at line 2922 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetDoublenum(), CMSSearchSettings_Base::m_Doublenum, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetDoublewin() [1/2]

void CMSSearchSettings_Base::SetDoublewin ( CMSSearchSettings_Base::TDoublewin  value )

inline

Assign a value to Doublewin data member.

Parameters

value

Value to assign

Definition at line 2821 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Doublewin, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetDoublewin() [2/2]

CMSSearchSettings_Base::TDoublewin & CMSSearchSettings_Base::SetDoublewin ( void  )

inline

Assign a value to Doublewin data member.

Returns

Reference to the data value.

Definition at line 2828 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetDoublewin(), CMSSearchSettings_Base::m_Doublewin, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetEmail() [1/3]

void CMSResponse_Base::SetEmail ( const TEmail &  value )

inline

Assign a value to Email data member.

Parameters

value

Value to assign

Definition at line 691 of file MSResponse_.hpp.

References CMSResponse_Base::m_Email, CMSResponse_Base::m_set_State, and rapidjson::value.

SetEmail() [2/3]

void CMSResponse_Base::SetEmail ( CMSResponse_Base::TEmail &&  value )

inline

Definition at line 698 of file MSResponse_.hpp.

References CMSResponse_Base::m_Email, CMSResponse_Base::m_set_State, and rapidjson::value.

SetEmail() [3/3]

CMSResponse_Base::TEmail & CMSResponse_Base::SetEmail ( void  )

inline

Assign a value to Email data member.

Returns

Reference to the data value.

Definition at line 705 of file MSResponse_.hpp.

References CMSResponse_Base::IsSetEmail(), CMSResponse_Base::m_Email, CMSResponse_Base::m_set_State, and CSerialObject::UnassignedString().

SetEnzyme() [1/2]

void CMSSearchSettings_Base::SetEnzyme ( CMSSearchSettings_Base::TEnzyme  value )

inline

Assign a value to Enzyme data member.

Parameters

value

Value to assign

Definition at line 3012 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Enzyme, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetEnzyme() [2/2]

CMSSearchSettings_Base::TEnzyme & CMSSearchSettings_Base::SetEnzyme ( void  )

inline

Assign a value to Enzyme data member.

Returns

Reference to the data value.

Definition at line 3019 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetEnzyme(), CMSSearchSettings_Base::m_Enzyme, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetError() [1/4]

void CMSHitSet_Base::SetError ( CMSHitSet_Base::TError  value )

inline

Assign a value to Error data member.

Parameters

value

Value to assign

Definition at line 472 of file MSHitSet_.hpp.

References CMSHitSet_Base::m_Error, CMSHitSet_Base::m_set_State, and rapidjson::value.

SetError() [2/4]

void CMSResponse_Base::SetError ( CMSResponse_Base::TError  value )

inline

Assign a value to Error data member.

Parameters

value

Value to assign

Definition at line 604 of file MSResponse_.hpp.

References CMSResponse_Base::m_Error, CMSResponse_Base::m_set_State, and rapidjson::value.

SetError() [3/4]

CMSHitSet_Base::TError & CMSHitSet_Base::SetError ( void  )

inline

Assign a value to Error data member.

Returns

Reference to the data value.

Definition at line 479 of file MSHitSet_.hpp.

References CMSHitSet_Base::IsSetError(), CMSHitSet_Base::m_Error, CMSHitSet_Base::m_set_State, and CSerialObject::UnassignedByte().

SetError() [4/4]

CMSResponse_Base::TError & CMSResponse_Base::SetError ( void  )

inline

Assign a value to Error data member.

Returns

Reference to the data value.

Definition at line 611 of file MSResponse_.hpp.

References CMSResponse_Base::IsSetError(), CMSResponse_Base::m_Error, CMSResponse_Base::m_set_State, and CSerialObject::UnassignedByte().

SetEvalue() [1/2]

void CMSHits_Base::SetEvalue ( CMSHits_Base::TEvalue  value )

inline

Assign a value to Evalue data member.

Parameters

value

Value to assign

Definition at line 750 of file MSHits_.hpp.

References CMSHits_Base::m_Evalue, CMSHits_Base::m_set_State, and rapidjson::value.

Referenced by CSearch< LEGACY, NHITS >::SetResult().

SetEvalue() [2/2]

CMSHits_Base::TEvalue & CMSHits_Base::SetEvalue ( void  )

inline

Assign a value to Evalue data member.

Returns

Reference to the data value.

Definition at line 757 of file MSHits_.hpp.

References CMSHits_Base::IsSetEvalue(), CMSHits_Base::m_Evalue, CMSHits_Base::m_set_State, and CSerialObject::UnassignedByte().

SetExactmass() [1/2]

void CMSSearchSettings_Base::SetExactmass ( CMSSearchSettings_Base::TExactmass  value )

inline

Assign a value to Exactmass data member.

Parameters

value

Value to assign

Definition at line 3817 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Exactmass, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetExactmass() [2/2]

CMSSearchSettings_Base::TExactmass & CMSSearchSettings_Base::SetExactmass ( void  )

inline

Assign a value to Exactmass data member.

Returns

Reference to the data value.

Definition at line 3824 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetExactmass(), CMSSearchSettings_Base::m_Exactmass, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetFixed()

CMSSearchSettings_Base::TFixed & CMSSearchSettings_Base::SetFixed ( void  )

inline

Assign a value to Fixed data member.

Returns

Reference to the data value.

Definition at line 2952 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Fixed, and CMSSearchSettings_Base::m_set_State.

Referenced by COMSSABase::SetSearchSettings().

SetGi() [1/2]

void CMSPepHit_Base::SetGi ( CMSPepHit_Base::TGi  value )

inline

Assign a value to Gi data member.

Parameters

value

Value to assign

Definition at line 656 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_Gi, CMSPepHit_Base::m_set_State, and rapidjson::value.

Referenced by CSearch< LEGACY, NHITS >::SetResult().

SetGi() [2/2]

CMSPepHit_Base::TGi & CMSPepHit_Base::SetGi ( void  )

inline

Assign a value to Gi data member.

Returns

Reference to the data value.

Definition at line 663 of file MSPepHit_.hpp.

References CMSPepHit_Base::IsSetGi(), CMSPepHit_Base::m_Gi, CMSPepHit_Base::m_set_State, and CSerialObject::UnassignedByte().

SetHitlistlen() [1/2]

void CMSSearchSettings_Base::SetHitlistlen ( CMSSearchSettings_Base::THitlistlen  value )

inline

Assign a value to Hitlistlen data member.

Parameters

value

Value to assign

Definition at line 3109 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Hitlistlen, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetHitlistlen() [2/2]

CMSSearchSettings_Base::THitlistlen & CMSSearchSettings_Base::SetHitlistlen ( void  )

inline

Assign a value to Hitlistlen data member.

Returns

Reference to the data value.

Definition at line 3116 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetHitlistlen(), CMSSearchSettings_Base::m_Hitlistlen, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetHits()

CMSHitSet_Base::THits & CMSHitSet_Base::SetHits ( void  )

inline

Assign a value to Hits data member.

Returns

Reference to the data value.

Definition at line 509 of file MSHitSet_.hpp.

References CMSHitSet_Base::m_Hits, and CMSHitSet_Base::m_set_State.

SetHitsets()

CMSResponse_Base::THitsets & CMSResponse_Base::SetHitsets ( void  )

inline

Assign a value to Hitsets data member.

Returns

Reference to the data value.

Definition at line 472 of file MSResponse_.hpp.

References CMSResponse_Base::m_Hitsets, and CMSResponse_Base::m_set_State.

Referenced by CSearch< LEGACY, NHITS >::SetResult().

SetIds() [1/2]

CMSHitSet_Base::TIds & CMSHitSet_Base::SetIds ( void  )

inline

Assign a value to Ids data member.

Returns

Reference to the data value.

Definition at line 534 of file MSHitSet_.hpp.

References CMSHitSet_Base::m_Ids, and CMSHitSet_Base::m_set_State.

SetIds() [2/2]

CMSSpectrum_Base::TIds & CMSSpectrum_Base::SetIds ( void  )

inline

Assign a value to Ids data member.

Returns

Reference to the data value.

Definition at line 657 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_Ids, and CMSSpectrum_Base::m_set_State.

SetImmonium() [1/2]

void CMSIon_Base::SetImmonium

(

CMSIon_Base::TImmonium &

value

)

Assign a value to Immonium data member.

Parameters

value

Reference to value.

Definition at line 62 of file MSIon_.cpp.

References CMSIon_Base::m_Immonium, and rapidjson::value.

SetImmonium() [2/2]

CMSIon_Base::TImmonium & CMSIon_Base::SetImmonium

(

void

)

Assign a value to Immonium data member.

Returns

Reference to the data value.

Definition at line 67 of file MSIon_.cpp.

References CMSIon_Base::m_Immonium.

SetIncluderequest() [1/2]

void CMSOutFile_Base::SetIncluderequest ( CMSOutFile_Base::TIncluderequest  value )

inline

Assign a value to Includerequest data member.

Parameters

value

Value to assign

Definition at line 365 of file MSOutFile_.hpp.

References CMSOutFile_Base::m_Includerequest, CMSOutFile_Base::m_set_State, and rapidjson::value.

SetIncluderequest() [2/2]

CMSOutFile_Base::TIncluderequest & CMSOutFile_Base::SetIncluderequest ( void  )

inline

Assign a value to Includerequest data member.

Returns

Reference to the data value.

Definition at line 372 of file MSOutFile_.hpp.

References CMSOutFile_Base::IsSetIncluderequest(), CMSOutFile_Base::m_Includerequest, CMSOutFile_Base::m_set_State, and CSerialObject::UnassignedByte().

SetIndex() [1/2]

void CMSMZHit_Base::SetIndex ( CMSMZHit_Base::TIndex  value )

inline

Assign a value to Index data member.

Parameters

value

Value to assign

Definition at line 627 of file MSMZHit_.hpp.

References CMSMZHit_Base::m_Index, CMSMZHit_Base::m_set_State, and rapidjson::value.

SetIndex() [2/2]

CMSMZHit_Base::TIndex & CMSMZHit_Base::SetIndex ( void  )

inline

Assign a value to Index data member.

Returns

Reference to the data value.

Definition at line 634 of file MSMZHit_.hpp.

References CMSMZHit_Base::IsSetIndex(), CMSMZHit_Base::m_Index, CMSMZHit_Base::m_set_State, and CSerialObject::UnassignedByte().

SetInfile() [1/3]

void CMSInFile_Base::SetInfile ( const TInfile &  value )

inline

Assign a value to Infile data member.

Parameters

value

Value to assign

Definition at line 223 of file MSInFile_.hpp.

References CMSInFile_Base::m_Infile, CMSInFile_Base::m_set_State, and rapidjson::value.

SetInfile() [2/3]

void CMSInFile_Base::SetInfile ( CMSInFile_Base::TInfile &&  value )

inline

Definition at line 230 of file MSInFile_.hpp.

References CMSInFile_Base::m_Infile, CMSInFile_Base::m_set_State, and rapidjson::value.

SetInfile() [3/3]

CMSInFile_Base::TInfile & CMSInFile_Base::SetInfile ( void  )

inline

Assign a value to Infile data member.

Returns

Reference to the data value.

Definition at line 237 of file MSInFile_.hpp.

References CMSInFile_Base::IsSetInfile(), CMSInFile_Base::m_Infile, CMSInFile_Base::m_set_State, and CSerialObject::UnassignedString().

SetInfiles()

CMSSearchSettings_Base::TInfiles & CMSSearchSettings_Base::SetInfiles ( void  )

inline

Assign a value to Infiles data member.

Returns

Reference to the data value.

Definition at line 3969 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Infiles, and CMSSearchSettings_Base::m_set_State.

Referenced by COMSSABase::SetSearchSettings().

SetInfiletype() [1/2]

void CMSInFile_Base::SetInfiletype ( CMSInFile_Base::TInfiletype  value )

inline

Assign a value to Infiletype data member.

Parameters

value

Value to assign

Definition at line 277 of file MSInFile_.hpp.

References CMSInFile_Base::m_Infiletype, CMSInFile_Base::m_set_State, and rapidjson::value.

SetInfiletype() [2/2]

CMSInFile_Base::TInfiletype & CMSInFile_Base::SetInfiletype ( void  )

inline

Assign a value to Infiletype data member.

Returns

Reference to the data value.

Definition at line 284 of file MSInFile_.hpp.

References CMSInFile_Base::IsSetInfiletype(), CMSInFile_Base::m_Infiletype, CMSInFile_Base::m_set_State, and CSerialObject::UnassignedByte().

SetInternal() [1/3]

void CMSIon_Base::SetInternal ( const TInternal &  value )

inline

Assign a value to Internal data member.

Parameters

value

Value to assign

Definition at line 405 of file MSIon_.hpp.

References CMSIon_Base::m_Internal, CMSIon_Base::m_set_State, and rapidjson::value.

SetInternal() [2/3]

void CMSIon_Base::SetInternal ( CMSIon_Base::TInternal &&  value )

inline

Definition at line 412 of file MSIon_.hpp.

References CMSIon_Base::m_Internal, CMSIon_Base::m_set_State, and rapidjson::value.

SetInternal() [3/3]

CMSIon_Base::TInternal & CMSIon_Base::SetInternal ( void  )

inline

Assign a value to Internal data member.

Returns

Reference to the data value.

Definition at line 419 of file MSIon_.hpp.

References CMSIon_Base::IsSetInternal(), CMSIon_Base::m_Internal, CMSIon_Base::m_set_State, and CSerialObject::UnassignedString().

SetIon() [1/2]

void CMSMZHit_Base::SetIon ( CMSMZHit_Base::TIon  value )

inline

Assign a value to Ion data member.

Parameters

value

Value to assign

Definition at line 439 of file MSMZHit_.hpp.

References CMSMZHit_Base::m_Ion, CMSMZHit_Base::m_set_State, and rapidjson::value.

SetIon() [2/2]

CMSMZHit_Base::TIon & CMSMZHit_Base::SetIon ( void  )

inline

Assign a value to Ion data member.

Returns

Reference to the data value.

Definition at line 446 of file MSMZHit_.hpp.

References CMSMZHit_Base::IsSetIon(), CMSMZHit_Base::m_Ion, CMSMZHit_Base::m_set_State, and CSerialObject::UnassignedByte().

SetIonstosearch()

CMSSearchSettings_Base::TIonstosearch & CMSSearchSettings_Base::SetIonstosearch ( void  )

inline

Assign a value to Ionstosearch data member.

Returns

Reference to the data value.

Definition at line 2410 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Ionstosearch, and CMSSearchSettings_Base::m_set_State.

Referenced by COMSSABase::SetSearchSettings().

SetIscale() [1/2]

void CMSSpectrum_Base::SetIscale ( CMSSpectrum_Base::TIscale  value )

inline

Assign a value to Iscale data member.

Parameters

value

Value to assign

Definition at line 620 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_Iscale, CMSSpectrum_Base::m_set_State, and rapidjson::value.

SetIscale() [2/2]

CMSSpectrum_Base::TIscale & CMSSpectrum_Base::SetIscale ( void  )

inline

Assign a value to Iscale data member.

Returns

Reference to the data value.

Definition at line 627 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::IsSetIscale(), CMSSpectrum_Base::m_Iscale, CMSSpectrum_Base::m_set_State, and CSerialObject::UnassignedByte().

SetIsotope() [1/2]

void CMSIon_Base::SetIsotope ( CMSIon_Base::TIsotope  value )

inline

Assign a value to Isotope data member.

Parameters

value

Value to assign

Definition at line 365 of file MSIon_.hpp.

References CMSIon_Base::m_Isotope, CMSIon_Base::m_set_State, and rapidjson::value.

SetIsotope() [2/2]

CMSIon_Base::TIsotope & CMSIon_Base::SetIsotope ( void  )

inline

Assign a value to Isotope data member.

Returns

Reference to the data value.

Definition at line 372 of file MSIon_.hpp.

References CMSIon_Base::IsSetIsotope(), CMSIon_Base::m_Isotope, CMSIon_Base::m_set_State, and CSerialObject::UnassignedByte().

SetIterativesettings() [1/2]

void CMSSearchSettings_Base::SetIterativesettings

(

CMSSearchSettings_Base::TIterativesettings &

value

)

Assign a value to Iterativesettings data member.

Parameters

value

Reference to value.

Definition at line 126 of file MSSearchSettings_.cpp.

References CMSSearchSettings_Base::m_Iterativesettings, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetIterativesettings() [2/2]

CMSSearchSettings_Base::TIterativesettings & CMSSearchSettings_Base::SetIterativesettings

(

void

)

Assign a value to Iterativesettings data member.

Returns

Reference to the data value.

Definition at line 131 of file MSSearchSettings_.cpp.

References CMSSearchSettings_Base::m_Iterativesettings.

SetLibaccession() [1/3]

void CMSHits_Base::SetLibaccession ( const TLibaccession &  value )

inline

Assign a value to Libaccession data member.

Parameters

value

Value to assign

Definition at line 1313 of file MSHits_.hpp.

References CMSHits_Base::m_Libaccession, CMSHits_Base::m_set_State, and rapidjson::value.

SetLibaccession() [2/3]

void CMSHits_Base::SetLibaccession ( CMSHits_Base::TLibaccession &&  value )

inline

Definition at line 1320 of file MSHits_.hpp.

References CMSHits_Base::m_Libaccession, CMSHits_Base::m_set_State, and rapidjson::value.

SetLibaccession() [3/3]

CMSHits_Base::TLibaccession & CMSHits_Base::SetLibaccession ( void  )

inline

Assign a value to Libaccession data member.

Returns

Reference to the data value.

Definition at line 1327 of file MSHits_.hpp.

References CMSHits_Base::IsSetLibaccession(), CMSHits_Base::m_Libaccession, CMSHits_Base::m_set_State, and CSerialObject::UnassignedString().

SetLibnames()

CMSLibrarySettings_Base::TLibnames & CMSLibrarySettings_Base::SetLibnames ( void  )

inline

Assign a value to Libnames data member.

Returns

Reference to the data value.

Definition at line 337 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::m_Libnames, and CMSLibrarySettings_Base::m_set_State.

SetLibsearchsettings() [1/2]

void CMSSearchSettings_Base::SetLibsearchsettings

(

CMSSearchSettings_Base::TLibsearchsettings &

value

)

Assign a value to Libsearchsettings data member.

Parameters

value

Reference to value.

Definition at line 155 of file MSSearchSettings_.cpp.

References CMSSearchSettings_Base::m_Libsearchsettings, and rapidjson::value.

SetLibsearchsettings() [2/2]

CMSSearchSettings_Base::TLibsearchsettings & CMSSearchSettings_Base::SetLibsearchsettings

(

void

)

Assign a value to Libsearchsettings data member.

Returns

Reference to the data value.

Definition at line 160 of file MSSearchSettings_.cpp.

References CMSSearchSettings_Base::m_Libsearchsettings.

SetLomasscutoff() [1/2]

void CMSSearchSettings_Base::SetLomasscutoff ( CMSSearchSettings_Base::TLomasscutoff  value )

inline

Assign a value to Lomasscutoff data member.

Parameters

value

Value to assign

Definition at line 4217 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Lomasscutoff, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

SetLomasscutoff() [2/2]

CMSSearchSettings_Base::TLomasscutoff & CMSSearchSettings_Base::SetLomasscutoff ( void  )

inline

Assign a value to Lomasscutoff data member.

Returns

Reference to the data value.

Definition at line 4224 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetLomasscutoff(), CMSSearchSettings_Base::m_Lomasscutoff, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetMass() [1/2]

void CMSHits_Base::SetMass ( CMSHits_Base::TMass  value )

inline

Assign a value to Mass data member.

Parameters

value

Value to assign

Definition at line 988 of file MSHits_.hpp.

References CMSHits_Base::m_Mass, CMSHits_Base::m_set_State, and rapidjson::value.

Referenced by CSearch< LEGACY, NHITS >::SetResult().

SetMass() [2/2]

CMSHits_Base::TMass & CMSHits_Base::SetMass ( void  )

inline

Assign a value to Mass data member.

Returns

Reference to the data value.

Definition at line 995 of file MSHits_.hpp.

References CMSHits_Base::IsSetMass(), CMSHits_Base::m_Mass, CMSHits_Base::m_set_State, and CSerialObject::UnassignedByte().

SetMassdiff() [1/2]

void CMSIonAnnot_Base::SetMassdiff ( CMSIonAnnot_Base::TMassdiff  value )

inline

Assign a value to Massdiff data member.

Parameters

value

Value to assign

Definition at line 313 of file MSIonAnnot_.hpp.

References CMSIonAnnot_Base::m_Massdiff, CMSIonAnnot_Base::m_set_State, and rapidjson::value.

SetMassdiff() [2/2]

CMSIonAnnot_Base::TMassdiff & CMSIonAnnot_Base::SetMassdiff ( void  )

inline

Assign a value to Massdiff data member.

Returns

Reference to the data value.

Definition at line 320 of file MSIonAnnot_.hpp.

References CMSIonAnnot_Base::IsSetMassdiff(), CMSIonAnnot_Base::m_Massdiff, CMSIonAnnot_Base::m_set_State, and CSerialObject::UnassignedByte().

SetMaxcharge() [1/2]

void CMSChargeHandle_Base::SetMaxcharge ( CMSChargeHandle_Base::TMaxcharge  value )

inline

Assign a value to Maxcharge data member.

Parameters

value

Value to assign

Definition at line 688 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_Maxcharge, CMSChargeHandle_Base::m_set_State, and rapidjson::value.

SetMaxcharge() [2/2]

CMSChargeHandle_Base::TMaxcharge & CMSChargeHandle_Base::SetMaxcharge ( void  )

inline

Assign a value to Maxcharge data member.

Returns

Reference to the data value.

Definition at line 695 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::IsSetMaxcharge(), CMSChargeHandle_Base::m_Maxcharge, CMSChargeHandle_Base::m_set_State, and CSerialObject::UnassignedByte().

SetMaxmods() [1/2]

void CMSSearchSettings_Base::SetMaxmods ( CMSSearchSettings_Base::TMaxmods  value )

inline

Assign a value to Maxmods data member.

Parameters

value

Value to assign

Definition at line 3403 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Maxmods, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetMaxmods() [2/2]

CMSSearchSettings_Base::TMaxmods & CMSSearchSettings_Base::SetMaxmods ( void  )

inline

Assign a value to Maxmods data member.

Returns

Reference to the data value.

Definition at line 3410 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetMaxmods(), CMSSearchSettings_Base::m_Maxmods, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetMaxnoenzyme() [1/2]

void CMSSearchSettings_Base::SetMaxnoenzyme ( CMSSearchSettings_Base::TMaxnoenzyme  value )

inline

Assign a value to Maxnoenzyme data member.

Parameters

value

Value to assign

Definition at line 3770 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Maxnoenzyme, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetMaxnoenzyme() [2/2]

CMSSearchSettings_Base::TMaxnoenzyme & CMSSearchSettings_Base::SetMaxnoenzyme ( void  )

inline

Assign a value to Maxnoenzyme data member.

Returns

Reference to the data value.

Definition at line 3777 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetMaxnoenzyme(), CMSSearchSettings_Base::m_Maxnoenzyme, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetMaxproductcharge() [1/2]

void CMSChargeHandle_Base::SetMaxproductcharge ( CMSChargeHandle_Base::TMaxproductcharge  value )

inline

Assign a value to Maxproductcharge data member.

Parameters

value

Value to assign

Definition at line 832 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_Maxproductcharge, CMSChargeHandle_Base::m_set_State, and rapidjson::value.

SetMaxproductcharge() [2/2]

CMSChargeHandle_Base::TMaxproductcharge & CMSChargeHandle_Base::SetMaxproductcharge ( void  )

inline

Assign a value to Maxproductcharge data member.

Returns

Reference to the data value.

Definition at line 839 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::IsSetMaxproductcharge(), CMSChargeHandle_Base::m_Maxproductcharge, CMSChargeHandle_Base::m_set_State, and CSerialObject::UnassignedByte().

SetMaxproductions() [1/2]

void CMSSearchSettings_Base::SetMaxproductions ( CMSSearchSettings_Base::TMaxproductions  value )

inline

Assign a value to Maxproductions data member.

Parameters

value

Value to assign

Definition at line 3670 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Maxproductions, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetMaxproductions() [2/2]

CMSSearchSettings_Base::TMaxproductions & CMSSearchSettings_Base::SetMaxproductions ( void  )

inline

Assign a value to Maxproductions data member.

Returns

Reference to the data value.

Definition at line 3677 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetMaxproductions(), CMSSearchSettings_Base::m_Maxproductions, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetMincharge() [1/2]

void CMSChargeHandle_Base::SetMincharge ( CMSChargeHandle_Base::TMincharge  value )

inline

Assign a value to Mincharge data member.

Parameters

value

Value to assign

Definition at line 638 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_Mincharge, CMSChargeHandle_Base::m_set_State, and rapidjson::value.

SetMincharge() [2/2]

CMSChargeHandle_Base::TMincharge & CMSChargeHandle_Base::SetMincharge ( void  )

inline

Assign a value to Mincharge data member.

Returns

Reference to the data value.

Definition at line 645 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::IsSetMincharge(), CMSChargeHandle_Base::m_Mincharge, CMSChargeHandle_Base::m_set_State, and CSerialObject::UnassignedByte().

SetMinhit() [1/2]

void CMSSearchSettings_Base::SetMinhit ( CMSSearchSettings_Base::TMinhit  value )

inline

Assign a value to Minhit data member.

Parameters

value

Value to assign

Definition at line 3253 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Minhit, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetMinhit() [2/2]

CMSSearchSettings_Base::TMinhit & CMSSearchSettings_Base::SetMinhit ( void  )

inline

Assign a value to Minhit data member.

Returns

Reference to the data value.

Definition at line 3260 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetMinhit(), CMSSearchSettings_Base::m_Minhit, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetMinnoenzyme() [1/2]

void CMSSearchSettings_Base::SetMinnoenzyme ( CMSSearchSettings_Base::TMinnoenzyme  value )

inline

Assign a value to Minnoenzyme data member.

Parameters

value

Value to assign

Definition at line 3720 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Minnoenzyme, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetMinnoenzyme() [2/2]

CMSSearchSettings_Base::TMinnoenzyme & CMSSearchSettings_Base::SetMinnoenzyme ( void  )

inline

Assign a value to Minnoenzyme data member.

Returns

Reference to the data value.

Definition at line 3727 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetMinnoenzyme(), CMSSearchSettings_Base::m_Minnoenzyme, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetMinspectra() [1/2]

void CMSSearchSettings_Base::SetMinspectra ( CMSSearchSettings_Base::TMinspectra  value )

inline

Assign a value to Minspectra data member.

Parameters

value

Value to assign

Definition at line 3303 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Minspectra, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetMinspectra() [2/2]

CMSSearchSettings_Base::TMinspectra & CMSSearchSettings_Base::SetMinspectra ( void  )

inline

Assign a value to Minspectra data member.

Returns

Reference to the data value.

Definition at line 3310 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetMinspectra(), CMSSearchSettings_Base::m_Minspectra, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetMissedcleave() [1/2]

void CMSSearchSettings_Base::SetMissedcleave ( CMSSearchSettings_Base::TMissedcleave  value )

inline

Assign a value to Missedcleave data member.

Parameters

value

Value to assign

Definition at line 3059 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Missedcleave, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetMissedcleave() [2/2]

CMSSearchSettings_Base::TMissedcleave & CMSSearchSettings_Base::SetMissedcleave ( void  )

inline

Assign a value to Missedcleave data member.

Returns

Reference to the data value.

Definition at line 3066 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetMissedcleave(), CMSSearchSettings_Base::m_Missedcleave, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetMissingisotope() [1/2]

void CMSIonAnnot_Base::SetMissingisotope ( CMSIonAnnot_Base::TMissingisotope  value )

inline

Assign a value to Missingisotope data member.

Parameters

value

Value to assign

Definition at line 360 of file MSIonAnnot_.hpp.

References CMSIonAnnot_Base::m_Missingisotope, CMSIonAnnot_Base::m_set_State, and rapidjson::value.

SetMissingisotope() [2/2]

CMSIonAnnot_Base::TMissingisotope & CMSIonAnnot_Base::SetMissingisotope ( void  )

inline

Assign a value to Missingisotope data member.

Returns

Reference to the data value.

Definition at line 367 of file MSIonAnnot_.hpp.

References CMSIonAnnot_Base::IsSetMissingisotope(), CMSIonAnnot_Base::m_Missingisotope, CMSIonAnnot_Base::m_set_State, and CSerialObject::UnassignedByte().

SetMod() [1/2]

void CMSModSpec_Base::SetMod ( CMSModSpec_Base::TMod  value )

inline

Assign a value to Mod data member.

Parameters

value

Value to assign

Definition at line 560 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_Mod, CMSModSpec_Base::m_set_State, and rapidjson::value.

SetMod() [2/2]

CMSModSpec_Base::TMod & CMSModSpec_Base::SetMod ( void  )

inline

Assign a value to Mod data member.

Returns

Reference to the data value.

Definition at line 567 of file MSModSpec_.hpp.

References CMSModSpec_Base::IsSetMod(), CMSModSpec_Base::m_Mod, CMSModSpec_Base::m_set_State, and CSerialObject::UnassignedByte().

SetMods()

CMSHits_Base::TMods & CMSHits_Base::SetMods ( void  )

inline

Assign a value to Mods data member.

Returns

Reference to the data value.

Definition at line 1025 of file MSHits_.hpp.

References CMSHits_Base::m_Mods, and CMSHits_Base::m_set_State.

Referenced by CSearch< LEGACY, NHITS >::AddModsToHit().

SetModset() [1/2]

void CMSRequest_Base::SetModset

(

CMSRequest_Base::TModset &

value

)

Assign a value to Modset data member.

Parameters

value

Reference to value.

Definition at line 110 of file MSRequest_.cpp.

References CMSRequest_Base::m_Modset, and rapidjson::value.

SetModset() [2/2]

CMSRequest_Base::TModset & CMSRequest_Base::SetModset

(

void

)

Assign a value to Modset data member.

Returns

Reference to the data value.

Definition at line 115 of file MSRequest_.cpp.

References CMSRequest_Base::m_Modset.

SetModtype() [1/2]

void CMSModHit_Base::SetModtype ( CMSModHit_Base::TModtype  value )

inline

Assign a value to Modtype data member.

Parameters

value

Value to assign

Definition at line 276 of file MSModHit_.hpp.

References CMSModHit_Base::m_Modtype, CMSModHit_Base::m_set_State, and rapidjson::value.

SetModtype() [2/2]

CMSModHit_Base::TModtype & CMSModHit_Base::SetModtype ( void  )

inline

Assign a value to Modtype data member.

Returns

Reference to the data value.

Definition at line 283 of file MSModHit_.hpp.

References CMSModHit_Base::IsSetModtype(), CMSModHit_Base::m_Modtype, CMSModHit_Base::m_set_State, and CSerialObject::UnassignedByte().

SetMonomass() [1/4]

void CMSMassSet_Base::SetMonomass ( CMSMassSet_Base::TMonomass  value )

inline

Assign a value to Monomass data member.

Parameters

value

Value to assign

Definition at line 263 of file MSMassSet_.hpp.

References CMSMassSet_Base::m_Monomass, CMSMassSet_Base::m_set_State, and rapidjson::value.

SetMonomass() [2/4]

void CMSModSpec_Base::SetMonomass ( CMSModSpec_Base::TMonomass  value )

inline

Assign a value to Monomass data member.

Parameters

value

Value to assign

Definition at line 701 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_Monomass, CMSModSpec_Base::m_set_State, and rapidjson::value.

SetMonomass() [3/4]

CMSMassSet_Base::TMonomass & CMSMassSet_Base::SetMonomass ( void  )

inline

Assign a value to Monomass data member.

Returns

Reference to the data value.

Definition at line 270 of file MSMassSet_.hpp.

References CMSMassSet_Base::IsSetMonomass(), CMSMassSet_Base::m_Monomass, CMSMassSet_Base::m_set_State, and CSerialObject::UnassignedByte().

SetMonomass() [4/4]

CMSModSpec_Base::TMonomass & CMSModSpec_Base::SetMonomass ( void  )

inline

Assign a value to Monomass data member.

Returns

Reference to the data value.

Definition at line 708 of file MSModSpec_.hpp.

References CMSModSpec_Base::IsSetMonomass(), CMSModSpec_Base::m_Monomass, CMSModSpec_Base::m_set_State, and CSerialObject::UnassignedByte().

SetMoreion() [1/2]

void CMSMZHit_Base::SetMoreion

(

CMSMZHit_Base::TMoreion &

value

)

Assign a value to Moreion data member.

Parameters

value

Reference to value.

Definition at line 57 of file MSMZHit_.cpp.

References CMSMZHit_Base::m_Moreion, and rapidjson::value.

SetMoreion() [2/2]

CMSMZHit_Base::TMoreion & CMSMZHit_Base::SetMoreion

(

void

)

Assign a value to Moreion data member.

Returns

Reference to the data value.

Definition at line 62 of file MSMZHit_.cpp.

References CMSMZHit_Base::m_Moreion.

SetMoresettings() [1/2]

void CMSRequest_Base::SetMoresettings

(

CMSRequest_Base::TMoresettings &

value

)

Assign a value to Moresettings data member.

Parameters

value

Reference to value.

Definition at line 93 of file MSRequest_.cpp.

References CMSRequest_Base::m_Moresettings, and rapidjson::value.

SetMoresettings() [2/2]

CMSRequest_Base::TMoresettings & CMSRequest_Base::SetMoresettings

(

void

)

Assign a value to Moresettings data member.

Returns

Reference to the data value.

Definition at line 98 of file MSRequest_.cpp.

References CMSRequest_Base::m_Moresettings.

SetMsmsppm() [1/2]

void CMSSearchSettings_Base::SetMsmsppm ( CMSSearchSettings_Base::TMsmsppm  value )

inline

Assign a value to Msmsppm data member.

Parameters

value

Value to assign

Definition at line 4476 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Msmsppm, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

SetMsmsppm() [2/2]

CMSSearchSettings_Base::TMsmsppm & CMSSearchSettings_Base::SetMsmsppm ( void  )

inline

Assign a value to Msmsppm data member.

Returns

Reference to the data value.

Definition at line 4483 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetMsmsppm(), CMSSearchSettings_Base::m_Msmsppm, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetMsmstol() [1/2]

void CMSSearchSettings_Base::SetMsmstol ( CMSSearchSettings_Base::TMsmstol  value )

inline

Assign a value to Msmstol data member.

Parameters

value

Value to assign

Definition at line 2492 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Msmstol, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetMsmstol() [2/2]

CMSSearchSettings_Base::TMsmstol & CMSSearchSettings_Base::SetMsmstol ( void  )

inline

Assign a value to Msmstol data member.

Returns

Reference to the data value.

Definition at line 2499 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetMsmstol(), CMSSearchSettings_Base::m_Msmstol, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetMz() [1/3]

void CMSMZHit_Base::SetMz ( CMSMZHit_Base::TMz  value )

inline

Assign a value to Mz data member.

Parameters

value

Value to assign

Definition at line 580 of file MSMZHit_.hpp.

References CMSMZHit_Base::m_Mz, CMSMZHit_Base::m_set_State, and rapidjson::value.

SetMz() [2/3]

CMSMZHit_Base::TMz & CMSMZHit_Base::SetMz ( void  )

inline

Assign a value to Mz data member.

Returns

Reference to the data value.

Definition at line 587 of file MSMZHit_.hpp.

References CMSMZHit_Base::IsSetMz(), CMSMZHit_Base::m_Mz, CMSMZHit_Base::m_set_State, and CSerialObject::UnassignedByte().

SetMz() [3/3]

CMSSpectrum_Base::TMz & CMSSpectrum_Base::SetMz ( void  )

inline

Assign a value to Mz data member.

Returns

Reference to the data value.

Definition at line 560 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_Mz, and CMSSpectrum_Base::m_set_State.

SetMzhits()

CMSHits_Base::TMzhits & CMSHits_Base::SetMzhits ( void  )

inline

Assign a value to Mzhits data member.

Returns

Reference to the data value.

Definition at line 906 of file MSHits_.hpp.

References CMSHits_Base::m_Mzhits, and CMSHits_Base::m_set_State.

Referenced by CSearch< LEGACY, NHITS >::AddIonsToHit().

SetN15mass() [1/4]

void CMSMassSet_Base::SetN15mass ( CMSMassSet_Base::TN15mass  value )

inline

Assign a value to N15mass data member.

Parameters

value

Value to assign

Definition at line 357 of file MSMassSet_.hpp.

References CMSMassSet_Base::m_N15mass, CMSMassSet_Base::m_set_State, and rapidjson::value.

SetN15mass() [2/4]

void CMSModSpec_Base::SetN15mass ( CMSModSpec_Base::TN15mass  value )

inline

Assign a value to N15mass data member.

Parameters

value

Value to assign

Definition at line 795 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_N15mass, CMSModSpec_Base::m_set_State, and rapidjson::value.

SetN15mass() [3/4]

CMSMassSet_Base::TN15mass & CMSMassSet_Base::SetN15mass ( void  )

inline

Assign a value to N15mass data member.

Returns

Reference to the data value.

Definition at line 364 of file MSMassSet_.hpp.

References CMSMassSet_Base::IsSetN15mass(), CMSMassSet_Base::m_N15mass, CMSMassSet_Base::m_set_State, and CSerialObject::UnassignedByte().

SetN15mass() [4/4]

CMSModSpec_Base::TN15mass & CMSModSpec_Base::SetN15mass ( void  )

inline

Assign a value to N15mass data member.

Returns

Reference to the data value.

Definition at line 802 of file MSModSpec_.hpp.

References CMSModSpec_Base::IsSetN15mass(), CMSModSpec_Base::m_N15mass, CMSModSpec_Base::m_set_State, and CSerialObject::UnassignedByte().

SetName() [1/9]

void CMSModSpec_Base::SetName ( const TName &  value )

inline

Assign a value to Name data member.

Parameters

value

Value to assign

Definition at line 647 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_Name, CMSModSpec_Base::m_set_State, and rapidjson::value.

SetName() [2/9]

void CMSScoreSet_Base::SetName ( const TName &  value )

inline

Assign a value to Name data member.

Parameters

value

Value to assign

Definition at line 221 of file MSScoreSet_.hpp.

References CMSScoreSet_Base::m_Name, CMSScoreSet_Base::m_set_State, and rapidjson::value.

SetName() [3/9]

void CNameValue_Base::SetName ( const TName &  value )

inline

Assign a value to Name data member.

Parameters

value

Value to assign

Definition at line 222 of file NameValue_.hpp.

References CNameValue_Base::m_Name, CNameValue_Base::m_set_State, and rapidjson::value.

SetName() [4/9]

void CMSModSpec_Base::SetName ( CMSModSpec_Base::TName &&  value )

inline

Definition at line 654 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_Name, CMSModSpec_Base::m_set_State, and rapidjson::value.

SetName() [5/9]

void CMSScoreSet_Base::SetName ( CMSScoreSet_Base::TName &&  value )

inline

Definition at line 228 of file MSScoreSet_.hpp.

References CMSScoreSet_Base::m_Name, CMSScoreSet_Base::m_set_State, and rapidjson::value.

SetName() [6/9]

void CNameValue_Base::SetName ( CNameValue_Base::TName &&  value )

inline

Definition at line 229 of file NameValue_.hpp.

References CNameValue_Base::m_Name, CNameValue_Base::m_set_State, and rapidjson::value.

SetName() [7/9]

CMSModSpec_Base::TName & CMSModSpec_Base::SetName ( void  )

inline

Assign a value to Name data member.

Returns

Reference to the data value.

Definition at line 661 of file MSModSpec_.hpp.

References CMSModSpec_Base::IsSetName(), CMSModSpec_Base::m_Name, CMSModSpec_Base::m_set_State, and CSerialObject::UnassignedString().

SetName() [8/9]

CMSScoreSet_Base::TName & CMSScoreSet_Base::SetName ( void  )

inline

Assign a value to Name data member.

Returns

Reference to the data value.

Definition at line 235 of file MSScoreSet_.hpp.

References CMSScoreSet_Base::IsSetName(), CMSScoreSet_Base::m_Name, CMSScoreSet_Base::m_set_State, and CSerialObject::UnassignedString().

SetName() [9/9]

CNameValue_Base::TName & CNameValue_Base::SetName ( void  )

inline

Assign a value to Name data member.

Returns

Reference to the data value.

Definition at line 236 of file NameValue_.hpp.

References CNameValue_Base::IsSetName(), CNameValue_Base::m_Name, CNameValue_Base::m_set_State, and CSerialObject::UnassignedString().

SetNamevalue() [1/2]

CMSHitSet_Base::TNamevalue & CMSHitSet_Base::SetNamevalue ( void  )

inline

Assign a value to Namevalue data member.

Returns

Reference to the data value.

Definition at line 559 of file MSHitSet_.hpp.

References CMSHitSet_Base::m_Namevalue, and CMSHitSet_Base::m_set_State.

SetNamevalue() [2/2]

CMSSpectrum_Base::TNamevalue & CMSSpectrum_Base::SetNamevalue ( void  )

inline

Assign a value to Namevalue data member.

Returns

Reference to the data value.

Definition at line 682 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_Namevalue, and CMSSpectrum_Base::m_set_State.

SetNegative() [1/2]

void CMSChargeHandle_Base::SetNegative ( CMSChargeHandle_Base::TNegative  value )

inline

Assign a value to Negative data member.

Parameters

value

Value to assign

Definition at line 929 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_Negative, CMSChargeHandle_Base::m_set_State, and rapidjson::value.

SetNegative() [2/2]

CMSChargeHandle_Base::TNegative & CMSChargeHandle_Base::SetNegative ( void  )

inline

Assign a value to Negative data member.

Returns

Reference to the data value.

Definition at line 936 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::IsSetNegative(), CMSChargeHandle_Base::m_Negative, CMSChargeHandle_Base::m_set_State, and CSerialObject::UnassignedByte().

SetNeutralloss() [1/4]

void CMSModSpec_Base::SetNeutralloss

(

CMSModSpec_Base::TNeutralloss &

value

)

Assign a value to Neutralloss data member.

Parameters

value

Reference to value.

Definition at line 68 of file MSModSpec_.cpp.

References CMSModSpec_Base::m_Neutralloss, and rapidjson::value.

SetNeutralloss() [2/4]

void CMSIon_Base::SetNeutralloss ( CMSIon_Base::TNeutralloss  value )

inline

Assign a value to Neutralloss data member.

Parameters

value

Value to assign

Definition at line 318 of file MSIon_.hpp.

References CMSIon_Base::m_Neutralloss, CMSIon_Base::m_set_State, and rapidjson::value.

SetNeutralloss() [3/4]

CMSIon_Base::TNeutralloss & CMSIon_Base::SetNeutralloss ( void  )

inline

Assign a value to Neutralloss data member.

Returns

Reference to the data value.

Definition at line 325 of file MSIon_.hpp.

References CMSIon_Base::IsSetNeutralloss(), CMSIon_Base::m_Neutralloss, CMSIon_Base::m_set_State, and CSerialObject::UnassignedByte().

SetNeutralloss() [4/4]

CMSModSpec_Base::TNeutralloss & CMSModSpec_Base::SetNeutralloss

(

void

)

Assign a value to Neutralloss data member.

Returns

Reference to the data value.

Definition at line 73 of file MSModSpec_.cpp.

References CMSModSpec_Base::m_Neutralloss.

SetNmethionine() [1/2]

void CMSSearchSettings_Base::SetNmethionine ( CMSSearchSettings_Base::TNmethionine  value )

inline

Assign a value to Nmethionine data member.

Parameters

value

Value to assign

Definition at line 4123 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Nmethionine, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetNmethionine() [2/2]

CMSSearchSettings_Base::TNmethionine & CMSSearchSettings_Base::SetNmethionine ( void  )

inline

Assign a value to Nmethionine data member.

Returns

Reference to the data value.

Definition at line 4130 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetNmethionine(), CMSSearchSettings_Base::m_Nmethionine, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetNocorrelationscore() [1/2]

void CMSSearchSettings_Base::SetNocorrelationscore ( CMSSearchSettings_Base::TNocorrelationscore  value )

inline

Assign a value to Nocorrelationscore data member.

Parameters

value

Value to assign

Definition at line 4029 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Nocorrelationscore, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetNocorrelationscore() [2/2]

CMSSearchSettings_Base::TNocorrelationscore & CMSSearchSettings_Base::SetNocorrelationscore ( void  )

inline

Assign a value to Nocorrelationscore data member.

Returns

Reference to the data value.

Definition at line 4036 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetNocorrelationscore(), CMSSearchSettings_Base::m_Nocorrelationscore, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetNoprolineions()

CMSSearchSettings_Base::TNoprolineions & CMSSearchSettings_Base::SetNoprolineions ( void  )

inline

Assign a value to Noprolineions data member.

Returns

Reference to the data value.

Definition at line 4275 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Noprolineions, and CMSSearchSettings_Base::m_set_State.

Referenced by COMSSABase::SetSearchSettings().

SetNumber() [1/6]

void CMSHitSet_Base::SetNumber ( CMSHitSet_Base::TNumber  value )

inline

Assign a value to Number data member.

Parameters

value

Value to assign

Definition at line 425 of file MSHitSet_.hpp.

References CMSHitSet_Base::m_Number, CMSHitSet_Base::m_set_State, and rapidjson::value.

SetNumber() [2/6]

void CMSMZHit_Base::SetNumber ( CMSMZHit_Base::TNumber  value )

inline

Assign a value to Number data member.

Parameters

value

Value to assign

Definition at line 533 of file MSMZHit_.hpp.

References CMSMZHit_Base::m_Number, CMSMZHit_Base::m_set_State, and rapidjson::value.

SetNumber() [3/6]

void CMSSpectrum_Base::SetNumber ( CMSSpectrum_Base::TNumber  value )

inline

Assign a value to Number data member.

Parameters

value

Value to assign

Definition at line 451 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_Number, CMSSpectrum_Base::m_set_State, and rapidjson::value.

SetNumber() [4/6]

CMSHitSet_Base::TNumber & CMSHitSet_Base::SetNumber ( void  )

inline

Assign a value to Number data member.

Returns

Reference to the data value.

Definition at line 432 of file MSHitSet_.hpp.

References CMSHitSet_Base::IsSetNumber(), CMSHitSet_Base::m_Number, CMSHitSet_Base::m_set_State, and CSerialObject::UnassignedByte().

SetNumber() [5/6]

CMSMZHit_Base::TNumber & CMSMZHit_Base::SetNumber ( void  )

inline

Assign a value to Number data member.

Returns

Reference to the data value.

Definition at line 540 of file MSMZHit_.hpp.

References CMSMZHit_Base::IsSetNumber(), CMSMZHit_Base::m_Number, CMSMZHit_Base::m_set_State, and CSerialObject::UnassignedByte().

SetNumber() [6/6]

CMSSpectrum_Base::TNumber & CMSSpectrum_Base::SetNumber ( void  )

inline

Assign a value to Number data member.

Returns

Reference to the data value.

Definition at line 458 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::IsSetNumber(), CMSSpectrum_Base::m_Number, CMSSpectrum_Base::m_set_State, and CSerialObject::UnassignedByte().

SetNumisotopes() [1/2]

void CMSSearchSettings_Base::SetNumisotopes ( CMSSearchSettings_Base::TNumisotopes  value )

inline

Assign a value to Numisotopes data member.

Parameters

value

Value to assign

Definition at line 4382 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Numisotopes, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetNumisotopes() [2/2]

CMSSearchSettings_Base::TNumisotopes & CMSSearchSettings_Base::SetNumisotopes ( void  )

inline

Assign a value to Numisotopes data member.

Returns

Reference to the data value.

Definition at line 4389 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetNumisotopes(), CMSSearchSettings_Base::m_Numisotopes, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetOid() [1/6]

void CMSBioseq_Base::SetOid ( CMSBioseq_Base::TOid  value )

inline

Assign a value to Oid data member.

Parameters

value

Value to assign

Definition at line 228 of file MSBioseq_.hpp.

References CMSBioseq_Base::m_Oid, CMSBioseq_Base::m_set_State, and rapidjson::value.

SetOid() [2/6]

void CMSHits_Base::SetOid ( CMSHits_Base::TOid  value )

inline

Assign a value to Oid data member.

Parameters

value

Value to assign

Definition at line 1248 of file MSHits_.hpp.

References CMSHits_Base::m_Oid, CMSHits_Base::m_set_State, and rapidjson::value.

SetOid() [3/6]

void CMSPepHit_Base::SetOid ( CMSPepHit_Base::TOid  value )

inline

Assign a value to Oid data member.

Parameters

value

Value to assign

Definition at line 844 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_Oid, CMSPepHit_Base::m_set_State, and rapidjson::value.

Referenced by CSearch< LEGACY, NHITS >::SetResult().

SetOid() [4/6]

CMSBioseq_Base::TOid & CMSBioseq_Base::SetOid ( void  )

inline

Assign a value to Oid data member.

Returns

Reference to the data value.

Definition at line 235 of file MSBioseq_.hpp.

References CMSBioseq_Base::IsSetOid(), CMSBioseq_Base::m_Oid, CMSBioseq_Base::m_set_State, and CSerialObject::UnassignedByte().

SetOid() [5/6]

CMSHits_Base::TOid & CMSHits_Base::SetOid ( void  )

inline

Assign a value to Oid data member.

Returns

Reference to the data value.

Definition at line 1255 of file MSHits_.hpp.

References CMSHits_Base::IsSetOid(), CMSHits_Base::m_Oid, CMSHits_Base::m_set_State, and CSerialObject::UnassignedByte().

SetOid() [6/6]

CMSPepHit_Base::TOid & CMSPepHit_Base::SetOid ( void  )

inline

Assign a value to Oid data member.

Returns

Reference to the data value.

Definition at line 851 of file MSPepHit_.hpp.

References CMSPepHit_Base::IsSetOid(), CMSPepHit_Base::m_Oid, CMSPepHit_Base::m_set_State, and CSerialObject::UnassignedByte().

SetOthersettings()

CMSSearchSettings_Base::TOthersettings & CMSSearchSettings_Base::SetOthersettings ( void  )

inline

Assign a value to Othersettings data member.

Returns

Reference to the data value.

Definition at line 4347 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Othersettings, and CMSSearchSettings_Base::m_set_State.

SetOutfile() [1/3]

void CMSOutFile_Base::SetOutfile ( const TOutfile &  value )

inline

Assign a value to Outfile data member.

Parameters

value

Value to assign

Definition at line 264 of file MSOutFile_.hpp.

References CMSOutFile_Base::m_Outfile, CMSOutFile_Base::m_set_State, and rapidjson::value.

SetOutfile() [2/3]

void CMSOutFile_Base::SetOutfile ( CMSOutFile_Base::TOutfile &&  value )

inline

Definition at line 271 of file MSOutFile_.hpp.

References CMSOutFile_Base::m_Outfile, CMSOutFile_Base::m_set_State, and rapidjson::value.

SetOutfile() [3/3]

CMSOutFile_Base::TOutfile & CMSOutFile_Base::SetOutfile ( void  )

inline

Assign a value to Outfile data member.

Returns

Reference to the data value.

Definition at line 278 of file MSOutFile_.hpp.

References CMSOutFile_Base::IsSetOutfile(), CMSOutFile_Base::m_Outfile, CMSOutFile_Base::m_set_State, and CSerialObject::UnassignedString().

SetOutfiles()

CMSSearchSettings_Base::TOutfiles & CMSSearchSettings_Base::SetOutfiles ( void  )

inline

Assign a value to Outfiles data member.

Returns

Reference to the data value.

Definition at line 3994 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Outfiles, and CMSSearchSettings_Base::m_set_State.

Referenced by COMSSABase::SetOutFile().

SetOutfiletype() [1/2]

void CMSOutFile_Base::SetOutfiletype ( CMSOutFile_Base::TOutfiletype  value )

inline

Assign a value to Outfiletype data member.

Parameters

value

Value to assign

Definition at line 318 of file MSOutFile_.hpp.

References CMSOutFile_Base::m_Outfiletype, CMSOutFile_Base::m_set_State, and rapidjson::value.

SetOutfiletype() [2/2]

CMSOutFile_Base::TOutfiletype & CMSOutFile_Base::SetOutfiletype ( void  )

inline

Assign a value to Outfiletype data member.

Returns

Reference to the data value.

Definition at line 325 of file MSOutFile_.hpp.

References CMSOutFile_Base::IsSetOutfiletype(), CMSOutFile_Base::m_Outfiletype, CMSOutFile_Base::m_set_State, and CSerialObject::UnassignedByte().

SetParent() [1/3]

void CMSImmonium_Base::SetParent ( const TParent &  value )

inline

Assign a value to Parent data member.

Parameters

value

Value to assign

Definition at line 224 of file MSImmonium_.hpp.

References CMSImmonium_Base::m_Parent, CMSImmonium_Base::m_set_State, and rapidjson::value.

SetParent() [2/3]

void CMSImmonium_Base::SetParent ( CMSImmonium_Base::TParent &&  value )

inline

Definition at line 231 of file MSImmonium_.hpp.

References CMSImmonium_Base::m_Parent, CMSImmonium_Base::m_set_State, and rapidjson::value.

SetParent() [3/3]

CMSImmonium_Base::TParent & CMSImmonium_Base::SetParent ( void  )

inline

Assign a value to Parent data member.

Returns

Reference to the data value.

Definition at line 238 of file MSImmonium_.hpp.

References CMSImmonium_Base::IsSetParent(), CMSImmonium_Base::m_Parent, CMSImmonium_Base::m_set_State, and CSerialObject::UnassignedString().

SetPephits()

CMSHits_Base::TPephits & CMSHits_Base::SetPephits ( void  )

inline

Assign a value to Pephits data member.

Returns

Reference to the data value.

Definition at line 881 of file MSHits_.hpp.

References CMSHits_Base::m_Pephits, and CMSHits_Base::m_set_State.

Referenced by CSearch< LEGACY, NHITS >::SetResult().

SetPepppm() [1/2]

void CMSSearchSettings_Base::SetPepppm ( CMSSearchSettings_Base::TPepppm  value )

inline

Assign a value to Pepppm data member.

Parameters

value

Value to assign

Definition at line 4429 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Pepppm, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetPepppm() [2/2]

CMSSearchSettings_Base::TPepppm & CMSSearchSettings_Base::SetPepppm ( void  )

inline

Assign a value to Pepppm data member.

Returns

Reference to the data value.

Definition at line 4436 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetPepppm(), CMSSearchSettings_Base::m_Pepppm, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetPepstart() [1/6]

void CMSHits_Base::SetPepstart ( const TPepstart &  value )

inline

Assign a value to Pepstart data member.

Parameters

value

Value to assign

Definition at line 1053 of file MSHits_.hpp.

References CMSHits_Base::m_Pepstart, CMSHits_Base::m_set_State, and rapidjson::value.

Referenced by CSearch< LEGACY, NHITS >::SetResult().

SetPepstart() [2/6]

void CMSPepHit_Base::SetPepstart ( const TPepstart &  value )

inline

Assign a value to Pepstart data member.

Parameters

value

Value to assign

Definition at line 931 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_Pepstart, CMSPepHit_Base::m_set_State, and rapidjson::value.

SetPepstart() [3/6]

void CMSHits_Base::SetPepstart ( CMSHits_Base::TPepstart &&  value )

inline

Definition at line 1060 of file MSHits_.hpp.

References CMSHits_Base::m_Pepstart, CMSHits_Base::m_set_State, and rapidjson::value.

SetPepstart() [4/6]

void CMSPepHit_Base::SetPepstart ( CMSPepHit_Base::TPepstart &&  value )

inline

Definition at line 938 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_Pepstart, CMSPepHit_Base::m_set_State, and rapidjson::value.

SetPepstart() [5/6]

CMSHits_Base::TPepstart & CMSHits_Base::SetPepstart ( void  )

inline

Assign a value to Pepstart data member.

Returns

Reference to the data value.

Definition at line 1067 of file MSHits_.hpp.

References CMSHits_Base::IsSetPepstart(), CMSHits_Base::m_Pepstart, CMSHits_Base::m_set_State, and CSerialObject::UnassignedString().

SetPepstart() [6/6]

CMSPepHit_Base::TPepstart & CMSPepHit_Base::SetPepstart ( void  )

inline

Assign a value to Pepstart data member.

Returns

Reference to the data value.

Definition at line 945 of file MSPepHit_.hpp.

References CMSPepHit_Base::IsSetPepstart(), CMSPepHit_Base::m_Pepstart, CMSPepHit_Base::m_set_State, and CSerialObject::UnassignedString().

SetPepstop() [1/6]

void CMSHits_Base::SetPepstop ( const TPepstop &  value )

inline

Assign a value to Pepstop data member.

Parameters

value

Value to assign

Definition at line 1100 of file MSHits_.hpp.

References CMSHits_Base::m_Pepstop, CMSHits_Base::m_set_State, and rapidjson::value.

Referenced by CSearch< LEGACY, NHITS >::SetResult().

SetPepstop() [2/6]

void CMSPepHit_Base::SetPepstop ( const TPepstop &  value )

inline

Assign a value to Pepstop data member.

Parameters

value

Value to assign

Definition at line 978 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_Pepstop, CMSPepHit_Base::m_set_State, and rapidjson::value.

SetPepstop() [3/6]

void CMSHits_Base::SetPepstop ( CMSHits_Base::TPepstop &&  value )

inline

Definition at line 1107 of file MSHits_.hpp.

References CMSHits_Base::m_Pepstop, CMSHits_Base::m_set_State, and rapidjson::value.

SetPepstop() [4/6]

void CMSPepHit_Base::SetPepstop ( CMSPepHit_Base::TPepstop &&  value )

inline

Definition at line 985 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_Pepstop, CMSPepHit_Base::m_set_State, and rapidjson::value.

SetPepstop() [5/6]

CMSHits_Base::TPepstop & CMSHits_Base::SetPepstop ( void  )

inline

Assign a value to Pepstop data member.

Returns

Reference to the data value.

Definition at line 1114 of file MSHits_.hpp.

References CMSHits_Base::IsSetPepstop(), CMSHits_Base::m_Pepstop, CMSHits_Base::m_set_State, and CSerialObject::UnassignedString().

SetPepstop() [6/6]

CMSPepHit_Base::TPepstop & CMSPepHit_Base::SetPepstop ( void  )

inline

Assign a value to Pepstop data member.

Returns

Reference to the data value.

Definition at line 992 of file MSPepHit_.hpp.

References CMSPepHit_Base::IsSetPepstop(), CMSPepHit_Base::m_Pepstop, CMSPepHit_Base::m_set_State, and CSerialObject::UnassignedString().

SetPepstring() [1/3]

void CMSHits_Base::SetPepstring ( const TPepstring &  value )

inline

Assign a value to Pepstring data member.

Parameters

value

Value to assign

Definition at line 934 of file MSHits_.hpp.

References CMSHits_Base::m_Pepstring, CMSHits_Base::m_set_State, and rapidjson::value.

Referenced by CSearch< LEGACY, NHITS >::SetResult().

SetPepstring() [2/3]

void CMSHits_Base::SetPepstring ( CMSHits_Base::TPepstring &&  value )

inline

Definition at line 941 of file MSHits_.hpp.

References CMSHits_Base::m_Pepstring, CMSHits_Base::m_set_State, and rapidjson::value.

SetPepstring() [3/3]

CMSHits_Base::TPepstring & CMSHits_Base::SetPepstring ( void  )

inline

Assign a value to Pepstring data member.

Returns

Reference to the data value.

Definition at line 948 of file MSHits_.hpp.

References CMSHits_Base::IsSetPepstring(), CMSHits_Base::m_Pepstring, CMSHits_Base::m_set_State, and CSerialObject::UnassignedString().

SetPeptol() [1/2]

void CMSSearchSettings_Base::SetPeptol ( CMSSearchSettings_Base::TPeptol  value )

inline

Assign a value to Peptol data member.

Parameters

value

Value to assign

Definition at line 2445 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Peptol, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetPeptol() [2/2]

CMSSearchSettings_Base::TPeptol & CMSSearchSettings_Base::SetPeptol ( void  )

inline

Assign a value to Peptol data member.

Returns

Reference to the data value.

Definition at line 2452 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetPeptol(), CMSSearchSettings_Base::m_Peptol, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetPlusone() [1/2]

void CMSChargeHandle_Base::SetPlusone ( CMSChargeHandle_Base::TPlusone  value )

inline

Assign a value to Plusone data member.

Parameters

value

Value to assign

Definition at line 785 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_Plusone, CMSChargeHandle_Base::m_set_State, and rapidjson::value.

SetPlusone() [2/2]

CMSChargeHandle_Base::TPlusone & CMSChargeHandle_Base::SetPlusone ( void  )

inline

Assign a value to Plusone data member.

Returns

Reference to the data value.

Definition at line 792 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::IsSetPlusone(), CMSChargeHandle_Base::m_Plusone, CMSChargeHandle_Base::m_set_State, and CSerialObject::UnassignedByte().

SetPrecursorcull() [1/2]

void CMSSearchSettings_Base::SetPrecursorcull ( CMSSearchSettings_Base::TPrecursorcull  value )

inline

Assign a value to Precursorcull data member.

Parameters

value

Value to assign

Definition at line 3932 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Precursorcull, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetPrecursorcull() [2/2]

CMSSearchSettings_Base::TPrecursorcull & CMSSearchSettings_Base::SetPrecursorcull ( void  )

inline

Assign a value to Precursorcull data member.

Returns

Reference to the data value.

Definition at line 3939 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetPrecursorcull(), CMSSearchSettings_Base::m_Precursorcull, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetPrecursormz() [1/2]

void CMSSpectrum_Base::SetPrecursormz ( CMSSpectrum_Base::TPrecursormz  value )

inline

Assign a value to Precursormz data member.

Parameters

value

Value to assign

Definition at line 523 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::m_Precursormz, CMSSpectrum_Base::m_set_State, and rapidjson::value.

SetPrecursormz() [2/2]

CMSSpectrum_Base::TPrecursormz & CMSSpectrum_Base::SetPrecursormz ( void  )

inline

Assign a value to Precursormz data member.

Returns

Reference to the data value.

Definition at line 530 of file MSSpectrum_.hpp.

References CMSSpectrum_Base::IsSetPrecursormz(), CMSSpectrum_Base::m_Precursormz, CMSSpectrum_Base::m_set_State, and CSerialObject::UnassignedByte().

SetPrecursorsearchtype() [1/2]

void CMSSearchSettings_Base::SetPrecursorsearchtype ( CMSSearchSettings_Base::TPrecursorsearchtype  value )

inline

Assign a value to Precursorsearchtype data member.

Parameters

value

Value to assign

Definition at line 2326 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Precursorsearchtype, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetPrecursorsearchtype() [2/2]

CMSSearchSettings_Base::TPrecursorsearchtype & CMSSearchSettings_Base::SetPrecursorsearchtype ( void  )

inline

Assign a value to Precursorsearchtype data member.

Returns

Reference to the data value.

Definition at line 2333 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetPrecursorsearchtype(), CMSSearchSettings_Base::m_Precursorsearchtype, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetPresearch() [1/2]

void CMSLibrarySettings_Base::SetPresearch ( CMSLibrarySettings_Base::TPresearch  value )

inline

Assign a value to Presearch data member.

Parameters

value

Value to assign

Definition at line 372 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::m_Presearch, CMSLibrarySettings_Base::m_set_State, and rapidjson::value.

SetPresearch() [2/2]

CMSLibrarySettings_Base::TPresearch & CMSLibrarySettings_Base::SetPresearch ( void  )

inline

Assign a value to Presearch data member.

Returns

Reference to the data value.

Definition at line 379 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::IsSetPresearch(), CMSLibrarySettings_Base::m_Presearch, CMSLibrarySettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetProbfollowingion() [1/2]

void CMSSearchSettings_Base::SetProbfollowingion ( CMSSearchSettings_Base::TProbfollowingion  value )

inline

Assign a value to Probfollowingion data member.

Parameters

value

Value to assign

Definition at line 4076 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Probfollowingion, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetProbfollowingion() [2/2]

CMSSearchSettings_Base::TProbfollowingion & CMSSearchSettings_Base::SetProbfollowingion ( void  )

inline

Assign a value to Probfollowingion data member.

Returns

Reference to the data value.

Definition at line 4083 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetProbfollowingion(), CMSSearchSettings_Base::m_Probfollowingion, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetProdlesspre() [1/2]

void CMSChargeHandle_Base::SetProdlesspre ( CMSChargeHandle_Base::TProdlesspre  value )

inline

Assign a value to Prodlesspre data member.

Parameters

value

Value to assign

Definition at line 879 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::m_Prodlesspre, CMSChargeHandle_Base::m_set_State, and rapidjson::value.

SetProdlesspre() [2/2]

CMSChargeHandle_Base::TProdlesspre & CMSChargeHandle_Base::SetProdlesspre ( void  )

inline

Assign a value to Prodlesspre data member.

Returns

Reference to the data value.

Definition at line 886 of file MSChargeHandle_.hpp.

References CMSChargeHandle_Base::IsSetProdlesspre(), CMSChargeHandle_Base::m_Prodlesspre, CMSChargeHandle_Base::m_set_State, and CSerialObject::UnassignedByte().

SetProduct() [1/3]

void CMSImmonium_Base::SetProduct ( const TProduct &  value )

inline

Assign a value to Product data member.

Parameters

value

Value to assign

Definition at line 271 of file MSImmonium_.hpp.

References CMSImmonium_Base::m_Product, CMSImmonium_Base::m_set_State, and rapidjson::value.

SetProduct() [2/3]

void CMSImmonium_Base::SetProduct ( CMSImmonium_Base::TProduct &&  value )

inline

Definition at line 278 of file MSImmonium_.hpp.

References CMSImmonium_Base::m_Product, CMSImmonium_Base::m_set_State, and rapidjson::value.

SetProduct() [3/3]

CMSImmonium_Base::TProduct & CMSImmonium_Base::SetProduct ( void  )

inline

Assign a value to Product data member.

Returns

Reference to the data value.

Definition at line 285 of file MSImmonium_.hpp.

References CMSImmonium_Base::IsSetProduct(), CMSImmonium_Base::m_Product, CMSImmonium_Base::m_set_State, and CSerialObject::UnassignedString().

SetProductsearchtype() [1/2]

void CMSSearchSettings_Base::SetProductsearchtype ( CMSSearchSettings_Base::TProductsearchtype  value )

inline

Assign a value to Productsearchtype data member.

Parameters

value

Value to assign

Definition at line 2373 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Productsearchtype, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetProductsearchtype() [2/2]

CMSSearchSettings_Base::TProductsearchtype & CMSSearchSettings_Base::SetProductsearchtype ( void  )

inline

Assign a value to Productsearchtype data member.

Returns

Reference to the data value.

Definition at line 2380 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetProductsearchtype(), CMSSearchSettings_Base::m_Productsearchtype, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetProtlength() [1/4]

void CMSHits_Base::SetProtlength ( CMSHits_Base::TProtlength  value )

inline

Assign a value to Protlength data member.

Parameters

value

Value to assign

Definition at line 1154 of file MSHits_.hpp.

References CMSHits_Base::m_Protlength, CMSHits_Base::m_set_State, and rapidjson::value.

SetProtlength() [2/4]

void CMSPepHit_Base::SetProtlength ( CMSPepHit_Base::TProtlength  value )

inline

Assign a value to Protlength data member.

Parameters

value

Value to assign

Definition at line 797 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_Protlength, CMSPepHit_Base::m_set_State, and rapidjson::value.

Referenced by CSearch< LEGACY, NHITS >::SetResult().

SetProtlength() [3/4]

CMSHits_Base::TProtlength & CMSHits_Base::SetProtlength ( void  )

inline

Assign a value to Protlength data member.

Returns

Reference to the data value.

Definition at line 1161 of file MSHits_.hpp.

References CMSHits_Base::IsSetProtlength(), CMSHits_Base::m_Protlength, CMSHits_Base::m_set_State, and CSerialObject::UnassignedByte().

SetProtlength() [4/4]

CMSPepHit_Base::TProtlength & CMSPepHit_Base::SetProtlength ( void  )

inline

Assign a value to Protlength data member.

Returns

Reference to the data value.

Definition at line 804 of file MSPepHit_.hpp.

References CMSPepHit_Base::IsSetProtlength(), CMSPepHit_Base::m_Protlength, CMSPepHit_Base::m_set_State, and CSerialObject::UnassignedByte().

SetPseudocount() [1/2]

void CMSSearchSettings_Base::SetPseudocount ( CMSSearchSettings_Base::TPseudocount  value )

inline

Assign a value to Pseudocount data member.

Parameters

value

Value to assign

Definition at line 3520 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Pseudocount, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetPseudocount() [2/2]

CMSSearchSettings_Base::TPseudocount & CMSSearchSettings_Base::SetPseudocount ( void  )

inline

Assign a value to Pseudocount data member.

Returns

Reference to the data value.

Definition at line 3527 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetPseudocount(), CMSSearchSettings_Base::m_Pseudocount, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetPsi_ms() [1/3]

void CMSModSpec_Base::SetPsi_ms ( const TPsi_ms &  value )

inline

Assign a value to Psi_ms data member.

Parameters

value

Value to assign

Definition at line 928 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_Psi_ms, CMSModSpec_Base::m_set_State, and rapidjson::value.

SetPsi_ms() [2/3]

void CMSModSpec_Base::SetPsi_ms ( CMSModSpec_Base::TPsi_ms &&  value )

inline

Definition at line 935 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_Psi_ms, CMSModSpec_Base::m_set_State, and rapidjson::value.

SetPsi_ms() [3/3]

CMSModSpec_Base::TPsi_ms & CMSModSpec_Base::SetPsi_ms ( void  )

inline

Assign a value to Psi_ms data member.

Returns

Reference to the data value.

Definition at line 942 of file MSModSpec_.hpp.

References CMSModSpec_Base::IsSetPsi_ms(), CMSModSpec_Base::m_Psi_ms, CMSModSpec_Base::m_set_State, and CSerialObject::UnassignedString().

SetPvalue() [1/2]

void CMSHits_Base::SetPvalue ( CMSHits_Base::TPvalue  value )

inline

Assign a value to Pvalue data member.

Parameters

value

Value to assign

Definition at line 797 of file MSHits_.hpp.

References CMSHits_Base::m_Pvalue, CMSHits_Base::m_set_State, and rapidjson::value.

Referenced by CSearch< LEGACY, NHITS >::SetResult().

SetPvalue() [2/2]

CMSHits_Base::TPvalue & CMSHits_Base::SetPvalue ( void  )

inline

Assign a value to Pvalue data member.

Returns

Reference to the data value.

Definition at line 804 of file MSHits_.hpp.

References CMSHits_Base::IsSetPvalue(), CMSHits_Base::m_Pvalue, CMSHits_Base::m_set_State, and CSerialObject::UnassignedByte().

SetQtofscore() [1/2]

void CMSLibrarySettings_Base::SetQtofscore ( CMSLibrarySettings_Base::TQtofscore  value )

inline

Assign a value to Qtofscore data member.

Parameters

value

Value to assign

Definition at line 513 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::m_Qtofscore, CMSLibrarySettings_Base::m_set_State, and rapidjson::value.

SetQtofscore() [2/2]

CMSLibrarySettings_Base::TQtofscore & CMSLibrarySettings_Base::SetQtofscore ( void  )

inline

Assign a value to Qtofscore data member.

Returns

Reference to the data value.

Definition at line 520 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::IsSetQtofscore(), CMSLibrarySettings_Base::m_Qtofscore, CMSLibrarySettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetReplacethresh() [1/2]

void CMSIterativeSettings_Base::SetReplacethresh ( CMSIterativeSettings_Base::TReplacethresh  value )

inline

Assign a value to Replacethresh data member.

Parameters

value

Value to assign

Definition at line 360 of file MSIterativeSettings_.hpp.

References CMSIterativeSettings_Base::m_Replacethresh, CMSIterativeSettings_Base::m_set_State, and rapidjson::value.

SetReplacethresh() [2/2]

CMSIterativeSettings_Base::TReplacethresh & CMSIterativeSettings_Base::SetReplacethresh ( void  )

inline

Assign a value to Replacethresh data member.

Returns

Reference to the data value.

Definition at line 367 of file MSIterativeSettings_.hpp.

References CMSIterativeSettings_Base::IsSetReplacethresh(), CMSIterativeSettings_Base::m_Replacethresh, CMSIterativeSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetReportedhitcount() [1/2]

void CMSSearchSettings_Base::SetReportedhitcount ( CMSSearchSettings_Base::TReportedhitcount  value )

inline

Assign a value to Reportedhitcount data member.

Parameters

value

Value to assign

Definition at line 4523 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Reportedhitcount, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetReportedhitcount() [2/2]

CMSSearchSettings_Base::TReportedhitcount & CMSSearchSettings_Base::SetReportedhitcount ( void  )

inline

Assign a value to Reportedhitcount data member.

Returns

Reference to the data value.

Definition at line 4530 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetReportedhitcount(), CMSSearchSettings_Base::m_Reportedhitcount, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetRequest()

CMSSearch_Base::TRequest & CMSSearch_Base::SetRequest ( void  )

inline

Assign a value to Request data member.

Returns

Reference to the data value.

Definition at line 210 of file MSSearch_.hpp.

References CMSSearch_Base::m_Request, and CMSSearch_Base::m_set_State.

Referenced by COMSSASearch::CopySettings(), COMSSASearch::CopySpectra(), CSearchHelper::ReadFile(), CSearchHelper::ReadSearchRequest(), COMSSASearch::RenumberSearchSettingId(), COMSSASearch::RenumberSpectrumNumber(), COMSSA::Run(), and CMSSearch::SetUpSearchSettings().

SetResearchthresh() [1/2]

void CMSIterativeSettings_Base::SetResearchthresh ( CMSIterativeSettings_Base::TResearchthresh  value )

inline

Assign a value to Researchthresh data member.

Parameters

value

Value to assign

Definition at line 266 of file MSIterativeSettings_.hpp.

References CMSIterativeSettings_Base::m_Researchthresh, CMSIterativeSettings_Base::m_set_State, and rapidjson::value.

SetResearchthresh() [2/2]

CMSIterativeSettings_Base::TResearchthresh & CMSIterativeSettings_Base::SetResearchthresh ( void  )

inline

Assign a value to Researchthresh data member.

Returns

Reference to the data value.

Definition at line 273 of file MSIterativeSettings_.hpp.

References CMSIterativeSettings_Base::IsSetResearchthresh(), CMSIterativeSettings_Base::m_Researchthresh, CMSIterativeSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetResidues()

CMSModSpec_Base::TResidues & CMSModSpec_Base::SetResidues ( void  )

inline

Assign a value to Residues data member.

Returns

Reference to the data value.

Definition at line 832 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_Residues, and CMSModSpec_Base::m_set_State.

SetResponse()

CMSSearch_Base::TResponse & CMSSearch_Base::SetResponse ( void  )

inline

Assign a value to Response data member.

Returns

Reference to the data value.

Definition at line 235 of file MSSearch_.hpp.

References CMSSearch_Base::m_Response, and CMSSearch_Base::m_set_State.

Referenced by COMSSASearch::AppendBioseq(), COMSSASearch::CopyHitsets(), COMSSASearch::PopulateOidList(), COMSSASearch::RenumberSearchSettingId(), COMSSASearch::RenumberSpectrumNumber(), COMSSA::Run(), CSearchHelper::SaveAnyFile(), and CSearchHelper::SaveOneFile().

SetReversed() [1/2]

void CMSPepHit_Base::SetReversed ( CMSPepHit_Base::TReversed  value )

inline

Assign a value to Reversed data member.

Parameters

value

Value to assign

Definition at line 891 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_Reversed, CMSPepHit_Base::m_set_State, and rapidjson::value.

SetReversed() [2/2]

CMSPepHit_Base::TReversed & CMSPepHit_Base::SetReversed ( void  )

inline

Assign a value to Reversed data member.

Returns

Reference to the data value.

Definition at line 898 of file MSPepHit_.hpp.

References CMSPepHit_Base::IsSetReversed(), CMSPepHit_Base::m_Reversed, CMSPepHit_Base::m_set_State, and CSerialObject::UnassignedByte().

SetReversesearch() [1/2]

void CMSSearchSettings_Base::SetReversesearch ( CMSSearchSettings_Base::TReversesearch  value )

inline

Assign a value to Reversesearch data member.

Parameters

value

Value to assign

Definition at line 4310 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Reversesearch, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

SetReversesearch() [2/2]

CMSSearchSettings_Base::TReversesearch & CMSSearchSettings_Base::SetReversesearch ( void  )

inline

Assign a value to Reversesearch data member.

Returns

Reference to the data value.

Definition at line 4317 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetReversesearch(), CMSSearchSettings_Base::m_Reversesearch, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetRid() [1/6]

void CMSRequest_Base::SetRid ( const TRid &  value )

inline

Assign a value to Rid data member.

Parameters

value

Value to assign

Definition at line 413 of file MSRequest_.hpp.

References CMSRequest_Base::m_Rid, CMSRequest_Base::m_set_State, and rapidjson::value.

SetRid() [2/6]

void CMSResponse_Base::SetRid ( const TRid &  value )

inline

Assign a value to Rid data member.

Parameters

value

Value to assign

Definition at line 550 of file MSResponse_.hpp.

References CMSResponse_Base::m_Rid, CMSResponse_Base::m_set_State, and rapidjson::value.

SetRid() [3/6]

void CMSRequest_Base::SetRid ( CMSRequest_Base::TRid &&  value )

inline

Definition at line 420 of file MSRequest_.hpp.

References CMSRequest_Base::m_Rid, CMSRequest_Base::m_set_State, and rapidjson::value.

SetRid() [4/6]

void CMSResponse_Base::SetRid ( CMSResponse_Base::TRid &&  value )

inline

Definition at line 557 of file MSResponse_.hpp.

References CMSResponse_Base::m_Rid, CMSResponse_Base::m_set_State, and rapidjson::value.

SetRid() [5/6]

CMSRequest_Base::TRid & CMSRequest_Base::SetRid ( void  )

inline

Assign a value to Rid data member.

Returns

Reference to the data value.

Definition at line 427 of file MSRequest_.hpp.

References CMSRequest_Base::IsSetRid(), CMSRequest_Base::m_Rid, CMSRequest_Base::m_set_State, and CSerialObject::UnassignedString().

SetRid() [6/6]

CMSResponse_Base::TRid & CMSResponse_Base::SetRid ( void  )

inline

Assign a value to Rid data member.

Returns

Reference to the data value.

Definition at line 564 of file MSResponse_.hpp.

References CMSResponse_Base::IsSetRid(), CMSResponse_Base::m_Rid, CMSResponse_Base::m_set_State, and CSerialObject::UnassignedString().

SetScale() [1/4]

void CMSResponse_Base::SetScale ( CMSResponse_Base::TScale  value )

inline

Assign a value to Scale data member.

Parameters

value

Value to assign

Definition at line 510 of file MSResponse_.hpp.

References CMSResponse_Base::m_Scale, CMSResponse_Base::m_set_State, and rapidjson::value.

Referenced by CSearch< LEGACY, NHITS >::Search().

SetScale() [2/4]

void CMSSearchSettings_Base::SetScale ( CMSSearchSettings_Base::TScale  value )

inline

Assign a value to Scale data member.

Parameters

value

Value to assign

Definition at line 3353 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Scale, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by CSearch< LEGACY, NHITS >::Search(), and COMSSABase::SetSearchSettings().

SetScale() [3/4]

CMSResponse_Base::TScale & CMSResponse_Base::SetScale ( void  )

inline

Assign a value to Scale data member.

Returns

Reference to the data value.

Definition at line 517 of file MSResponse_.hpp.

References CMSResponse_Base::IsSetScale(), CMSResponse_Base::m_Scale, CMSResponse_Base::m_set_State, and CSerialObject::UnassignedByte().

SetScale() [4/4]

CMSSearchSettings_Base::TScale & CMSSearchSettings_Base::SetScale ( void  )

inline

Assign a value to Scale data member.

Returns

Reference to the data value.

Definition at line 3360 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetScale(), CMSSearchSettings_Base::m_Scale, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetScores()

CMSHits_Base::TScores & CMSHits_Base::SetScores ( void  )

inline

Assign a value to Scores data member.

Returns

Reference to the data value.

Definition at line 1285 of file MSHits_.hpp.

References CMSHits_Base::m_Scores, and CMSHits_Base::m_set_State.

SetSearchb1() [1/2]

void CMSSearchSettings_Base::SetSearchb1 ( CMSSearchSettings_Base::TSearchb1  value )

inline

Assign a value to Searchb1 data member.

Parameters

value

Value to assign

Definition at line 3570 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Searchb1, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetSearchb1() [2/2]

CMSSearchSettings_Base::TSearchb1 & CMSSearchSettings_Base::SetSearchb1 ( void  )

inline

Assign a value to Searchb1 data member.

Returns

Reference to the data value.

Definition at line 3577 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetSearchb1(), CMSSearchSettings_Base::m_Searchb1, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetSearchctermproduct() [1/2]

void CMSSearchSettings_Base::SetSearchctermproduct ( CMSSearchSettings_Base::TSearchctermproduct  value )

inline

Assign a value to Searchctermproduct data member.

Parameters

value

Value to assign

Definition at line 3620 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_Searchctermproduct, CMSSearchSettings_Base::m_set_State, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetSearchctermproduct() [2/2]

CMSSearchSettings_Base::TSearchctermproduct & CMSSearchSettings_Base::SetSearchctermproduct ( void  )

inline

Assign a value to Searchctermproduct data member.

Returns

Reference to the data value.

Definition at line 3627 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetSearchctermproduct(), CMSSearchSettings_Base::m_Searchctermproduct, CMSSearchSettings_Base::m_set_State, and CSerialObject::UnassignedByte().

SetSeq() [1/2]

void CMSBioseq_Base::SetSeq

(

CMSBioseq_Base::TSeq &

value

)

Assign a value to Seq data member.

Parameters

value

Reference to value.

Definition at line 60 of file MSBioseq_.cpp.

References CMSBioseq_Base::m_Seq, and rapidjson::value.

SetSeq() [2/2]

CMSBioseq_Base::TSeq & CMSBioseq_Base::SetSeq ( void  )

inline

Assign a value to Seq data member.

Returns

Reference to the data value.

Definition at line 268 of file MSBioseq_.hpp.

References CMSBioseq_Base::m_Seq, and CMSBioseq_Base::ResetSeq().

SetSettingid() [1/4]

void CMSHitSet_Base::SetSettingid ( CMSHitSet_Base::TSettingid  value )

inline

Assign a value to Settingid data member.

Parameters

value

Value to assign

Definition at line 594 of file MSHitSet_.hpp.

References CMSHitSet_Base::m_set_State, CMSHitSet_Base::m_Settingid, and rapidjson::value.

SetSettingid() [2/4]

void CMSSearchSettings_Base::SetSettingid ( CMSSearchSettings_Base::TSettingid  value )

inline

Assign a value to Settingid data member.

Parameters

value

Value to assign

Definition at line 3864 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State, CMSSearchSettings_Base::m_Settingid, and rapidjson::value.

Referenced by COMSSASearch::RenumberOneSearchSettingId(), and CMSSearch::SetUpSearchSettings().

SetSettingid() [3/4]

CMSHitSet_Base::TSettingid & CMSHitSet_Base::SetSettingid ( void  )

inline

Assign a value to Settingid data member.

Returns

Reference to the data value.

Definition at line 601 of file MSHitSet_.hpp.

References CMSHitSet_Base::IsSetSettingid(), CMSHitSet_Base::m_set_State, CMSHitSet_Base::m_Settingid, and CSerialObject::UnassignedByte().

SetSettingid() [4/4]

CMSSearchSettings_Base::TSettingid & CMSSearchSettings_Base::SetSettingid ( void  )

inline

Assign a value to Settingid data member.

Returns

Reference to the data value.

Definition at line 3871 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetSettingid(), CMSSearchSettings_Base::m_set_State, CMSSearchSettings_Base::m_Settingid, and CSerialObject::UnassignedByte().

SetSettings() [1/2]

void CMSRequest_Base::SetSettings

(

CMSRequest_Base::TSettings &

value

)

Assign a value to Settings data member.

Parameters

value

Reference to value.

Definition at line 77 of file MSRequest_.cpp.

References CMSRequest_Base::m_Settings, and rapidjson::value.

SetSettings() [2/2]

CMSRequest_Base::TSettings & CMSRequest_Base::SetSettings ( void  )

inline

Assign a value to Settings data member.

Returns

Reference to the data value.

Definition at line 383 of file MSRequest_.hpp.

References CMSRequest_Base::m_Settings, and CMSRequest_Base::ResetSettings().

SetSinglenum() [1/2]

void CMSSearchSettings_Base::SetSinglenum ( CMSSearchSettings_Base::TSinglenum  value )

inline

Assign a value to Singlenum data member.

Parameters

value

Value to assign

Definition at line 2868 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State, CMSSearchSettings_Base::m_Singlenum, and rapidjson::value.

Referenced by CSearch< LEGACY, NHITS >::Search(), and COMSSABase::SetSearchSettings().

SetSinglenum() [2/2]

CMSSearchSettings_Base::TSinglenum & CMSSearchSettings_Base::SetSinglenum ( void  )

inline

Assign a value to Singlenum data member.

Returns

Reference to the data value.

Definition at line 2875 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetSinglenum(), CMSSearchSettings_Base::m_set_State, CMSSearchSettings_Base::m_Singlenum, and CSerialObject::UnassignedByte().

SetSinglewin() [1/2]

void CMSSearchSettings_Base::SetSinglewin ( CMSSearchSettings_Base::TSinglewin  value )

inline

Assign a value to Singlewin data member.

Parameters

value

Value to assign

Definition at line 2774 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State, CMSSearchSettings_Base::m_Singlewin, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetSinglewin() [2/2]

CMSSearchSettings_Base::TSinglewin & CMSSearchSettings_Base::SetSinglewin ( void  )

inline

Assign a value to Singlewin data member.

Returns

Reference to the data value.

Definition at line 2781 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetSinglewin(), CMSSearchSettings_Base::m_set_State, CMSSearchSettings_Base::m_Singlewin, and CSerialObject::UnassignedByte().

SetSite() [1/2]

void CMSModHit_Base::SetSite ( CMSModHit_Base::TSite  value )

inline

Assign a value to Site data member.

Parameters

value

Value to assign

Definition at line 229 of file MSModHit_.hpp.

References CMSModHit_Base::m_set_State, CMSModHit_Base::m_Site, and rapidjson::value.

SetSite() [2/2]

CMSModHit_Base::TSite & CMSModHit_Base::SetSite ( void  )

inline

Assign a value to Site data member.

Returns

Reference to the data value.

Definition at line 236 of file MSModHit_.hpp.

References CMSModHit_Base::IsSetSite(), CMSModHit_Base::m_set_State, CMSModHit_Base::m_Site, and CSerialObject::UnassignedByte().

SetSpectra() [1/2]

void CMSRequest_Base::SetSpectra

(

CMSRequest_Base::TSpectra &

value

)

Assign a value to Spectra data member.

Parameters

value

Reference to value.

Definition at line 63 of file MSRequest_.cpp.

References CMSRequest_Base::m_Spectra, and rapidjson::value.

SetSpectra() [2/2]

CMSRequest_Base::TSpectra & CMSRequest_Base::SetSpectra ( void  )

inline

Assign a value to Spectra data member.

Returns

Reference to the data value.

Definition at line 353 of file MSRequest_.hpp.

References CMSRequest_Base::m_Spectra, and CMSRequest_Base::ResetSpectra().

SetStart() [1/2]

void CMSPepHit_Base::SetStart ( CMSPepHit_Base::TStart  value )

inline

Assign a value to Start data member.

Parameters

value

Value to assign

Definition at line 562 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_set_State, CMSPepHit_Base::m_Start, and rapidjson::value.

Referenced by CSearch< LEGACY, NHITS >::SetResult().

SetStart() [2/2]

CMSPepHit_Base::TStart & CMSPepHit_Base::SetStart ( void  )

inline

Assign a value to Start data member.

Returns

Reference to the data value.

Definition at line 569 of file MSPepHit_.hpp.

References CMSPepHit_Base::IsSetStart(), CMSPepHit_Base::m_set_State, CMSPepHit_Base::m_Start, and CSerialObject::UnassignedByte().

SetStop() [1/2]

void CMSPepHit_Base::SetStop ( CMSPepHit_Base::TStop  value )

inline

Assign a value to Stop data member.

Parameters

value

Value to assign

Definition at line 609 of file MSPepHit_.hpp.

References CMSPepHit_Base::m_set_State, CMSPepHit_Base::m_Stop, and rapidjson::value.

Referenced by CSearch< LEGACY, NHITS >::SetResult().

SetStop() [2/2]

CMSPepHit_Base::TStop & CMSPepHit_Base::SetStop ( void  )

inline

Assign a value to Stop data member.

Returns

Reference to the data value.

Definition at line 616 of file MSPepHit_.hpp.

References CMSPepHit_Base::IsSetStop(), CMSPepHit_Base::m_set_State, CMSPepHit_Base::m_Stop, and CSerialObject::UnassignedByte().

SetSubsetthresh() [1/2]

void CMSIterativeSettings_Base::SetSubsetthresh ( CMSIterativeSettings_Base::TSubsetthresh  value )

inline

Assign a value to Subsetthresh data member.

Parameters

value

Value to assign

Definition at line 313 of file MSIterativeSettings_.hpp.

References CMSIterativeSettings_Base::m_set_State, CMSIterativeSettings_Base::m_Subsetthresh, and rapidjson::value.

SetSubsetthresh() [2/2]

CMSIterativeSettings_Base::TSubsetthresh & CMSIterativeSettings_Base::SetSubsetthresh ( void  )

inline

Assign a value to Subsetthresh data member.

Returns

Reference to the data value.

Definition at line 320 of file MSIterativeSettings_.hpp.

References CMSIterativeSettings_Base::IsSetSubsetthresh(), CMSIterativeSettings_Base::m_set_State, CMSIterativeSettings_Base::m_Subsetthresh, and CSerialObject::UnassignedByte().

SetSuspect() [1/2]

void CMSIonAnnot_Base::SetSuspect ( CMSIonAnnot_Base::TSuspect  value )

inline

Assign a value to Suspect data member.

Parameters

value

Value to assign

Definition at line 266 of file MSIonAnnot_.hpp.

References CMSIonAnnot_Base::m_set_State, CMSIonAnnot_Base::m_Suspect, and rapidjson::value.

SetSuspect() [2/2]

CMSIonAnnot_Base::TSuspect & CMSIonAnnot_Base::SetSuspect ( void  )

inline

Assign a value to Suspect data member.

Returns

Reference to the data value.

Definition at line 273 of file MSIonAnnot_.hpp.

References CMSIonAnnot_Base::IsSetSuspect(), CMSIonAnnot_Base::m_set_State, CMSIonAnnot_Base::m_Suspect, and CSerialObject::UnassignedByte().

SetTaxids()

CMSSearchSettings_Base::TTaxids & CMSSearchSettings_Base::SetTaxids ( void  )

inline

Assign a value to Taxids data member.

Returns

Reference to the data value.

Definition at line 3440 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State, and CMSSearchSettings_Base::m_Taxids.

Referenced by COMSSABase::SetSearchSettings().

SetTheomass() [1/2]

void CMSHits_Base::SetTheomass ( CMSHits_Base::TTheomass  value )

inline

Assign a value to Theomass data member.

Parameters

value

Value to assign

Definition at line 1201 of file MSHits_.hpp.

References CMSHits_Base::m_set_State, CMSHits_Base::m_Theomass, and rapidjson::value.

Referenced by CSearch< LEGACY, NHITS >::SetResult().

SetTheomass() [2/2]

CMSHits_Base::TTheomass & CMSHits_Base::SetTheomass ( void  )

inline

Assign a value to Theomass data member.

Returns

Reference to the data value.

Definition at line 1208 of file MSHits_.hpp.

References CMSHits_Base::IsSetTheomass(), CMSHits_Base::m_set_State, CMSHits_Base::m_Theomass, and CSerialObject::UnassignedByte().

SetTophitnum() [1/2]

void CMSSearchSettings_Base::SetTophitnum ( CMSSearchSettings_Base::TTophitnum  value )

inline

Assign a value to Tophitnum data member.

Parameters

value

Value to assign

Definition at line 3203 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State, CMSSearchSettings_Base::m_Tophitnum, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetTophitnum() [2/2]

CMSSearchSettings_Base::TTophitnum & CMSSearchSettings_Base::SetTophitnum ( void  )

inline

Assign a value to Tophitnum data member.

Returns

Reference to the data value.

Definition at line 3210 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetTophitnum(), CMSSearchSettings_Base::m_set_State, CMSSearchSettings_Base::m_Tophitnum, and CSerialObject::UnassignedByte().

SetType() [1/2]

void CMSModSpec_Base::SetType ( CMSModSpec_Base::TType  value )

inline

Assign a value to Type data member.

Parameters

value

Value to assign

Definition at line 607 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_set_State, CMSModSpec_Base::m_Type, and rapidjson::value.

SetType() [2/2]

CMSModSpec_Base::TType & CMSModSpec_Base::SetType ( void  )

inline

Assign a value to Type data member.

Returns

Reference to the data value.

Definition at line 614 of file MSModSpec_.hpp.

References CMSModSpec_Base::IsSetType(), CMSModSpec_Base::m_set_State, CMSModSpec_Base::m_Type, and CSerialObject::UnassignedByte().

SetUnimod() [1/2]

void CMSModSpec_Base::SetUnimod ( CMSModSpec_Base::TUnimod  value )

inline

Assign a value to Unimod data member.

Parameters

value

Value to assign

Definition at line 888 of file MSModSpec_.hpp.

References CMSModSpec_Base::m_set_State, CMSModSpec_Base::m_Unimod, and rapidjson::value.

SetUnimod() [2/2]

CMSModSpec_Base::TUnimod & CMSModSpec_Base::SetUnimod ( void  )

inline

Assign a value to Unimod data member.

Returns

Reference to the data value.

Definition at line 895 of file MSModSpec_.hpp.

References CMSModSpec_Base::IsSetUnimod(), CMSModSpec_Base::m_set_State, CMSModSpec_Base::m_Unimod, and CSerialObject::UnassignedByte().

SetUseomssascore() [1/2]

void CMSLibrarySettings_Base::SetUseomssascore ( CMSLibrarySettings_Base::TUseomssascore  value )

inline

Assign a value to Useomssascore data member.

Parameters

value

Value to assign

Definition at line 419 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::m_set_State, CMSLibrarySettings_Base::m_Useomssascore, and rapidjson::value.

SetUseomssascore() [2/2]

CMSLibrarySettings_Base::TUseomssascore & CMSLibrarySettings_Base::SetUseomssascore ( void  )

inline

Assign a value to Useomssascore data member.

Returns

Reference to the data value.

Definition at line 426 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::IsSetUseomssascore(), CMSLibrarySettings_Base::m_set_State, CMSLibrarySettings_Base::m_Useomssascore, and CSerialObject::UnassignedByte().

SetUserannotation() [1/2]

void CMSHitSet_Base::SetUserannotation ( CMSHitSet_Base::TUserannotation  value )

inline

Assign a value to Userannotation data member.

Parameters

value

Value to assign

Definition at line 641 of file MSHitSet_.hpp.

References CMSHitSet_Base::m_set_State, CMSHitSet_Base::m_Userannotation, and rapidjson::value.

SetUserannotation() [2/2]

CMSHitSet_Base::TUserannotation & CMSHitSet_Base::SetUserannotation ( void  )

inline

Assign a value to Userannotation data member.

Returns

Reference to the data value.

Definition at line 648 of file MSHitSet_.hpp.

References CMSHitSet_Base::IsSetUserannotation(), CMSHitSet_Base::m_set_State, CMSHitSet_Base::m_Userannotation, and CSerialObject::UnassignedByte().

SetUsereplicatescore() [1/2]

void CMSLibrarySettings_Base::SetUsereplicatescore ( CMSLibrarySettings_Base::TUsereplicatescore  value )

inline

Assign a value to Usereplicatescore data member.

Parameters

value

Value to assign

Definition at line 466 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::m_set_State, CMSLibrarySettings_Base::m_Usereplicatescore, and rapidjson::value.

SetUsereplicatescore() [2/2]

CMSLibrarySettings_Base::TUsereplicatescore & CMSLibrarySettings_Base::SetUsereplicatescore ( void  )

inline

Assign a value to Usereplicatescore data member.

Returns

Reference to the data value.

Definition at line 473 of file MSLibrarySettings_.hpp.

References CMSLibrarySettings_Base::IsSetUsereplicatescore(), CMSLibrarySettings_Base::m_set_State, CMSLibrarySettings_Base::m_Usereplicatescore, and CSerialObject::UnassignedByte().

SetUsermods() [1/2]

void CMSSearchSettings_Base::SetUsermods

(

CMSSearchSettings_Base::TUsermods &

value

)

Assign a value to Usermods data member.

Parameters

value

Reference to value.

Definition at line 109 of file MSSearchSettings_.cpp.

References CMSSearchSettings_Base::m_Usermods, and rapidjson::value.

SetUsermods() [2/2]

CMSSearchSettings_Base::TUsermods & CMSSearchSettings_Base::SetUsermods

(

void

)

Assign a value to Usermods data member.

Returns

Reference to the data value.

Definition at line 114 of file MSSearchSettings_.cpp.

References CMSSearchSettings_Base::m_Usermods.

SetValue() [1/5]

void CNameValue_Base::SetValue ( const TValue &  value )

inline

Assign a value to Value data member.

Parameters

value

Value to assign

Definition at line 269 of file NameValue_.hpp.

References CNameValue_Base::m_set_State, CNameValue_Base::m_Value, and rapidjson::value.

SetValue() [2/5]

void CNameValue_Base::SetValue ( CNameValue_Base::TValue &&  value )

inline

Definition at line 276 of file NameValue_.hpp.

References CNameValue_Base::m_set_State, CNameValue_Base::m_Value, and rapidjson::value.

SetValue() [3/5]

void CMSScoreSet_Base::SetValue ( CMSScoreSet_Base::TValue  value )

inline

Assign a value to Value data member.

Parameters

value

Value to assign

Definition at line 275 of file MSScoreSet_.hpp.

References CMSScoreSet_Base::m_set_State, CMSScoreSet_Base::m_Value, and rapidjson::value.

SetValue() [4/5]

CMSScoreSet_Base::TValue & CMSScoreSet_Base::SetValue ( void  )

inline

Assign a value to Value data member.

Returns

Reference to the data value.

Definition at line 282 of file MSScoreSet_.hpp.

References CMSScoreSet_Base::IsSetValue(), CMSScoreSet_Base::m_set_State, CMSScoreSet_Base::m_Value, and CSerialObject::UnassignedByte().

SetValue() [5/5]

CNameValue_Base::TValue & CNameValue_Base::SetValue ( void  )

inline

Assign a value to Value data member.

Returns

Reference to the data value.

Definition at line 283 of file NameValue_.hpp.

References CNameValue_Base::IsSetValue(), CNameValue_Base::m_set_State, CNameValue_Base::m_Value, and CSerialObject::UnassignedString().

SetVariable()

CMSSearchSettings_Base::TVariable & CMSSearchSettings_Base::SetVariable ( void  )

inline

Assign a value to Variable data member.

Returns

Reference to the data value.

Definition at line 2977 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State, and CMSSearchSettings_Base::m_Variable.

Referenced by COMSSABase::SetSearchSettings().

SetVersion() [1/3]

void CMSResponse_Base::SetVersion ( const TVersion &  value )

inline

Assign a value to Version data member.

Parameters

value

Value to assign

Definition at line 644 of file MSResponse_.hpp.

References CMSResponse_Base::m_set_State, CMSResponse_Base::m_Version, and rapidjson::value.

SetVersion() [2/3]

void CMSResponse_Base::SetVersion ( CMSResponse_Base::TVersion &&  value )

inline

Definition at line 651 of file MSResponse_.hpp.

References CMSResponse_Base::m_set_State, CMSResponse_Base::m_Version, and rapidjson::value.

SetVersion() [3/3]

CMSResponse_Base::TVersion & CMSResponse_Base::SetVersion ( void  )

inline

Assign a value to Version data member.

Returns

Reference to the data value.

Definition at line 658 of file MSResponse_.hpp.

References CMSResponse_Base::IsSetVersion(), CMSResponse_Base::m_set_State, CMSResponse_Base::m_Version, and CSerialObject::UnassignedString().

SetZdep() [1/2]

void CMSSearchSettings_Base::SetZdep ( CMSSearchSettings_Base::TZdep  value )

inline

Assign a value to Zdep data member.

Parameters

value

Value to assign

Definition at line 2539 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::m_set_State, CMSSearchSettings_Base::m_Zdep, and rapidjson::value.

Referenced by COMSSABase::SetSearchSettings().

SetZdep() [2/2]

CMSSearchSettings_Base::TZdep & CMSSearchSettings_Base::SetZdep ( void  )

inline

Assign a value to Zdep data member.

Returns

Reference to the data value.

Definition at line 2546 of file MSSearchSettings_.hpp.

References CMSSearchSettings_Base::IsSetZdep(), CMSSearchSettings_Base::m_set_State, CMSSearchSettings_Base::m_Zdep, and CSerialObject::UnassignedByte().

~CMSBioseq()

CMSBioseq::~CMSBioseq

(

void

)

Definition at line 50 of file MSBioseq.cpp.

~CMSBioseq_Base()

CMSBioseq_Base::~CMSBioseq_Base ( void  )

virtual

Definition at line 93 of file MSBioseq_.cpp.

~CMSBioseqSet_Base()

CMSBioseqSet_Base::~CMSBioseqSet_Base ( void  )

virtual

Definition at line 74 of file MSBioseqSet_.cpp.

~CMSChargeHandle()

CMSChargeHandle::~CMSChargeHandle

(

void

)

Definition at line 50 of file MSChargeHandle.cpp.

~CMSChargeHandle_Base()

CMSChargeHandle_Base::~CMSChargeHandle_Base ( void  )

virtual

Definition at line 89 of file MSChargeHandle_.cpp.

~CMSHits_Base()

CMSHits_Base::~CMSHits_Base ( void  )

virtual

Definition at line 153 of file MSHits_.cpp.

~CMSHitSet()

CMSHitSet::~CMSHitSet

(

void

)

Definition at line 50 of file MSHitSet.cpp.

~CMSHitSet_Base()

CMSHitSet_Base::~CMSHitSet_Base ( void  )

virtual

Definition at line 105 of file MSHitSet_.cpp.

~CMSImmonium()

CMSImmonium::~CMSImmonium

(

void

)

Definition at line 50 of file MSImmonium.cpp.

~CMSImmonium_Base()

CMSImmonium_Base::~CMSImmonium_Base ( void  )

virtual

Definition at line 86 of file MSImmonium_.cpp.

~CMSInFile()

CMSInFile::~CMSInFile

(

void

)

Definition at line 50 of file MSInFile.cpp.

~CMSInFile_Base()

CMSInFile_Base::~CMSInFile_Base ( void  )

virtual

Definition at line 81 of file MSInFile_.cpp.

~CMSIon()

CMSIon::~CMSIon

(

void

)

Definition at line 50 of file MSIon.cpp.

~CMSIon_Base()

CMSIon_Base::~CMSIon_Base ( void  )

virtual

Definition at line 103 of file MSIon_.cpp.

~CMSIonAnnot()

CMSIonAnnot::~CMSIonAnnot

(

void

)

Definition at line 50 of file MSIonAnnot.cpp.

~CMSIonAnnot_Base()

CMSIonAnnot_Base::~CMSIonAnnot_Base ( void  )

virtual

Definition at line 77 of file MSIonAnnot_.cpp.

~CMSIterativeSettings()

CMSIterativeSettings::~CMSIterativeSettings

(

void

)

Definition at line 50 of file MSIterativeSettings.cpp.

~CMSIterativeSettings_Base()

CMSIterativeSettings_Base::~CMSIterativeSettings_Base ( void  )

virtual

Definition at line 77 of file MSIterativeSettings_.cpp.

~CMSLibrarySettings()

CMSLibrarySettings::~CMSLibrarySettings

(

void

)

Definition at line 50 of file MSLibrarySettings.cpp.

~CMSLibrarySettings_Base()

CMSLibrarySettings_Base::~CMSLibrarySettings_Base ( void  )

virtual

Definition at line 87 of file MSLibrarySettings_.cpp.

~CMSMassSet()

CMSMassSet::~CMSMassSet

(

void

)

Definition at line 50 of file MSMassSet.cpp.

~CMSMassSet_Base()

CMSMassSet_Base::~CMSMassSet_Base ( void  )

virtual

Definition at line 77 of file MSMassSet_.cpp.

~CMSModHit()

CMSModHit::~CMSModHit

(

void

)

Definition at line 50 of file MSModHit.cpp.

~CMSModHit_Base()

CMSModHit_Base::~CMSModHit_Base ( void  )

virtual

Definition at line 75 of file MSModHit_.cpp.

~CMSModSpec()

CMSModSpec::~CMSModSpec

(

void

)

Definition at line 50 of file MSModSpec.cpp.

~CMSModSpec_Base()

CMSModSpec_Base::~CMSModSpec_Base ( void  )

virtual

Definition at line 127 of file MSModSpec_.cpp.

~CMSModSpecSet_Base()

CMSModSpecSet_Base::~CMSModSpecSet_Base ( void  )

virtual

Definition at line 74 of file MSModSpecSet_.cpp.

~CMSMZHit()

CMSMZHit::~CMSMZHit

(

void

)

Definition at line 50 of file MSMZHit.cpp.

~CMSMZHit_Base()

CMSMZHit_Base::~CMSMZHit_Base ( void  )

virtual

Definition at line 121 of file MSMZHit_.cpp.

~CMSOutFile()

CMSOutFile::~CMSOutFile

(

void

)

Definition at line 50 of file MSOutFile.cpp.

~CMSOutFile_Base()

CMSOutFile_Base::~CMSOutFile_Base ( void  )

virtual

Definition at line 83 of file MSOutFile_.cpp.

~CMSPepHit()

CMSPepHit::~CMSPepHit

(

void

)

Definition at line 50 of file MSPepHit.cpp.

~CMSPepHit_Base()

CMSPepHit_Base::~CMSPepHit_Base ( void  )

virtual

Definition at line 115 of file MSPepHit_.cpp.

~CMSRequest_Base()

CMSRequest_Base::~CMSRequest_Base ( void  )

virtual

Definition at line 156 of file MSRequest_.cpp.

~CMSResponse_Base()

CMSResponse_Base::~CMSResponse_Base ( void  )

virtual

Definition at line 130 of file MSResponse_.cpp.

~CMSScoreSet()

CMSScoreSet::~CMSScoreSet

(

void

)

Definition at line 50 of file MSScoreSet.cpp.

~CMSScoreSet_Base()

CMSScoreSet_Base::~CMSScoreSet_Base ( void  )

virtual

Definition at line 81 of file MSScoreSet_.cpp.

~CMSSearch_Base()

CMSSearch_Base::~CMSSearch_Base ( void  )

virtual

Definition at line 88 of file MSSearch_.cpp.

~CMSSearchSettings_Base()

CMSSearchSettings_Base::~CMSSearchSettings_Base ( void  )

virtual

Definition at line 306 of file MSSearchSettings_.cpp.

~CMSSearchSettingsSet()

CMSSearchSettingsSet::~CMSSearchSettingsSet

(

void

)

Definition at line 50 of file MSSearchSettingsSet.cpp.

~CMSSearchSettingsSet_Base()

CMSSearchSettingsSet_Base::~CMSSearchSettingsSet_Base ( void  )

virtual

Definition at line 74 of file MSSearchSettingsSet_.cpp.

~CMSSpectrum()

CMSSpectrum::~CMSSpectrum

(

void

)

Definition at line 50 of file MSSpectrum.cpp.

~CMSSpectrum_Base()

CMSSpectrum_Base::~CMSSpectrum_Base ( void  )

virtual

Definition at line 118 of file MSSpectrum_.cpp.

~CMSSpectrumset()

CMSSpectrumset::~CMSSpectrumset

(

void

)

Definition at line 50 of file MSSpectrumset.cpp.

~CMSSpectrumset_Base()

CMSSpectrumset_Base::~CMSSpectrumset_Base ( void  )

virtual

Definition at line 74 of file MSSpectrumset_.cpp.

~CNameValue()

CNameValue::~CNameValue

(

void

)

Definition at line 50 of file NameValue.cpp.

~CNameValue_Base()

CNameValue_Base::~CNameValue_Base ( void  )

virtual

Definition at line 86 of file NameValue_.cpp.

Variable Documentation

m_Abundance

vector< int > CMSSpectrum_Base::m_Abundance

private

Definition at line 407 of file MSSpectrum_.hpp.

Referenced by CMSSpectrum_Base::GetAbundance(), CMSSpectrum_Base::ResetAbundance(), and CMSSpectrum_Base::SetAbundance().

m_Accession

string CMSPepHit_Base::m_Accession

private

Definition at line 515 of file MSPepHit_.hpp.

Referenced by CMSPepHit_Base::GetAccession(), CMSPepHit_Base::ResetAccession(), and CMSPepHit_Base::SetAccession().

m_Annotation

CRef< TAnnotation > CMSMZHit_Base::m_Annotation

private

Definition at line 398 of file MSMZHit_.hpp.

Referenced by CMSMZHit_Base::GetAnnotation(), CMSMZHit_Base::IsSetAnnotation(), CMSMZHit_Base::ResetAnnotation(), and CMSMZHit_Base::SetAnnotation().

m_Automassadjust

double CMSSearchSettings_Base::m_Automassadjust

private

Definition at line 2276 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetAutomassadjust(), CMSSearchSettings_Base::ResetAutomassadjust(), and CMSSearchSettings_Base::SetAutomassadjust().

m_Averagemass [1/2]

double CMSMassSet_Base::m_Averagemass

private

Definition at line 221 of file MSMassSet_.hpp.

Referenced by CMSMassSet_Base::GetAveragemass(), CMSMassSet_Base::ResetAveragemass(), and CMSMassSet_Base::SetAveragemass().

m_Averagemass [2/2]

double CMSModSpec_Base::m_Averagemass

private

Definition at line 514 of file MSModSpec_.hpp.

Referenced by CMSModSpec_Base::GetAveragemass(), CMSModSpec_Base::ResetAveragemass(), and CMSModSpec_Base::SetAveragemass().

m_Bioseqs

CRef< TBioseqs > CMSResponse_Base::m_Bioseqs

private

Definition at line 441 of file MSResponse_.hpp.

Referenced by CMSResponse_Base::GetBioseqs(), CMSResponse_Base::IsSetBioseqs(), CMSResponse_Base::ResetBioseqs(), and CMSResponse_Base::SetBioseqs().

m_Calccharge

int CMSChargeHandle_Base::m_Calccharge

private

Definition at line 487 of file MSChargeHandle_.hpp.

Referenced by CMSChargeHandle_Base::GetCalccharge(), CMSChargeHandle_Base::ResetCalccharge(), and CMSChargeHandle_Base::SetCalccharge().

m_Calcplusone

int CMSChargeHandle_Base::m_Calcplusone

private

Definition at line 486 of file MSChargeHandle_.hpp.

Referenced by CMSChargeHandle_Base::GetCalcplusone(), CMSChargeHandle_Base::ResetCalcplusone(), and CMSChargeHandle_Base::SetCalcplusone().

m_Charge [1/3]

int CMSHits_Base::m_Charge

private

Definition at line 697 of file MSHits_.hpp.

Referenced by CMSHits_Base::GetCharge(), CMSHits_Base::ResetCharge(), and CMSHits_Base::SetCharge().

m_Charge [2/3]

int CMSMZHit_Base::m_Charge

private

Definition at line 393 of file MSMZHit_.hpp.

Referenced by CMSMZHit_Base::GetCharge(), CMSMZHit_Base::ResetCharge(), and CMSMZHit_Base::SetCharge().

m_Charge [3/3]

list< int > CMSSpectrum_Base::m_Charge

private

Definition at line 404 of file MSSpectrum_.hpp.

Referenced by CMSSpectrum_Base::GetCharge(), CMSSpectrum_Base::ResetCharge(), and CMSSpectrum_Base::SetCharge().

m_Chargehandling

CRef< TChargehandling > CMSSearchSettings_Base::m_Chargehandling

private

Definition at line 2259 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetChargehandling(), CMSSearchSettings_Base::IsSetChargehandling(), CMSSearchSettings_Base::ResetChargehandling(), and CMSSearchSettings_Base::SetChargehandling().

m_Considermult

int CMSChargeHandle_Base::m_Considermult

private

Definition at line 490 of file MSChargeHandle_.hpp.

Referenced by CMSChargeHandle_Base::GetConsidermult(), CMSChargeHandle_Base::ResetConsidermult(), and CMSChargeHandle_Base::SetConsidermult().

m_Cuthi

double CMSSearchSettings_Base::m_Cuthi

private

Definition at line 2241 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetCuthi(), CMSSearchSettings_Base::ResetCuthi(), and CMSSearchSettings_Base::SetCuthi().

m_Cutinc

double CMSSearchSettings_Base::m_Cutinc

private

Definition at line 2242 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetCutinc(), CMSSearchSettings_Base::ResetCutinc(), and CMSSearchSettings_Base::SetCutinc().

m_Cutlo

double CMSSearchSettings_Base::m_Cutlo

private

Definition at line 2240 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetCutlo(), CMSSearchSettings_Base::ResetCutlo(), and CMSSearchSettings_Base::SetCutlo().

m_Cutoff

double CMSSearchSettings_Base::m_Cutoff

private

Definition at line 2239 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetCutoff(), CMSSearchSettings_Base::ResetCutoff(), and CMSSearchSettings_Base::SetCutoff().

m_data [1/4]

list< CRef< CMSBioseq > > CMSBioseqSet_Base::m_data

private

Definition at line 139 of file MSBioseqSet_.hpp.

Referenced by CMSBioseqSet_Base::Get(), CMSBioseqSet_Base::Reset(), and CMSBioseqSet_Base::Set().

m_data [2/4]

list< CRef< CMSModSpec > > CMSModSpecSet_Base::m_data

private

Definition at line 140 of file MSModSpecSet_.hpp.

Referenced by CMSModSpecSet_Base::Get(), CMSModSpecSet_Base::Reset(), and CMSModSpecSet_Base::Set().

m_data [3/4]

list< CRef< CMSSearchSettings > > CMSSearchSettingsSet_Base::m_data

private

Definition at line 139 of file MSSearchSettingsSet_.hpp.

Referenced by CMSSearchSettingsSet_Base::Get(), CMSSearchSettingsSet_Base::Reset(), and CMSSearchSettingsSet_Base::Set().

m_data [4/4]

list< CRef< CMSSpectrum > > CMSSpectrumset_Base::m_data

private

Definition at line 140 of file MSSpectrumset_.hpp.

Referenced by CMSSpectrumset_Base::Get(), CMSSpectrumset_Base::Reset(), and CMSSpectrumset_Base::Set().

m_Db

string CMSSearchSettings_Base::m_Db

private

Definition at line 2252 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetDb(), CMSSearchSettings_Base::ResetDb(), and CMSSearchSettings_Base::SetDb().

m_Dbversion

int CMSResponse_Base::m_Dbversion

private

Definition at line 440 of file MSResponse_.hpp.

Referenced by CMSResponse_Base::GetDbversion(), CMSResponse_Base::ResetDbversion(), and CMSResponse_Base::SetDbversion().

m_Defline

string CMSPepHit_Base::m_Defline

private

Definition at line 516 of file MSPepHit_.hpp.

Referenced by CMSPepHit_Base::GetDefline(), CMSPepHit_Base::ResetDefline(), and CMSPepHit_Base::SetDefline().

m_Doublenum

int CMSSearchSettings_Base::m_Doublenum

private

Definition at line 2246 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetDoublenum(), CMSSearchSettings_Base::ResetDoublenum(), and CMSSearchSettings_Base::SetDoublenum().

m_Doublewin

int CMSSearchSettings_Base::m_Doublewin

private

Definition at line 2244 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetDoublewin(), CMSSearchSettings_Base::ResetDoublewin(), and CMSSearchSettings_Base::SetDoublewin().

m_Email

string CMSResponse_Base::m_Email

private

Definition at line 439 of file MSResponse_.hpp.

Referenced by CMSResponse_Base::GetEmail(), CMSResponse_Base::ResetEmail(), and CMSResponse_Base::SetEmail().

m_Enzyme

int CMSSearchSettings_Base::m_Enzyme

private

Definition at line 2249 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetEnzyme(), CMSSearchSettings_Base::ResetEnzyme(), and CMSSearchSettings_Base::SetEnzyme().

m_Error [1/2]

int CMSHitSet_Base::m_Error

private

Definition at line 379 of file MSHitSet_.hpp.

Referenced by CMSHitSet_Base::GetError(), CMSHitSet_Base::ResetError(), and CMSHitSet_Base::SetError().

m_Error [2/2]

int CMSResponse_Base::m_Error

private

Definition at line 437 of file MSResponse_.hpp.

Referenced by CMSResponse_Base::GetError(), CMSResponse_Base::ResetError(), and CMSResponse_Base::SetError().

m_Evalue

double CMSHits_Base::m_Evalue

private

Definition at line 695 of file MSHits_.hpp.

Referenced by CMSHits_Base::GetEvalue(), CMSHits_Base::ResetEvalue(), and CMSHits_Base::SetEvalue().

m_Exactmass

double CMSSearchSettings_Base::m_Exactmass

private

Definition at line 2267 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetExactmass(), CMSSearchSettings_Base::ResetExactmass(), and CMSSearchSettings_Base::SetExactmass().

m_Fixed

list< int > CMSSearchSettings_Base::m_Fixed

private

Definition at line 2247 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetFixed(), CMSSearchSettings_Base::ResetFixed(), and CMSSearchSettings_Base::SetFixed().

m_Gi

ncbi::TIntId CMSPepHit_Base::m_Gi

private

Definition at line 514 of file MSPepHit_.hpp.

Referenced by CMSPepHit_Base::GetGi(), CMSPepHit_Base::ResetGi(), and CMSPepHit_Base::SetGi().

m_Hitlistlen

int CMSSearchSettings_Base::m_Hitlistlen

private

Definition at line 2251 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetHitlistlen(), CMSSearchSettings_Base::ResetHitlistlen(), and CMSSearchSettings_Base::SetHitlistlen().

m_Hits

vector< CRef< CMSHits > > CMSHitSet_Base::m_Hits

private

Definition at line 380 of file MSHitSet_.hpp.

Referenced by CMSHitSet_Base::GetHits(), CMSHitSet_Base::ResetHits(), and CMSHitSet_Base::SetHits().

m_Hitsets

vector< CRef< CMSHitSet > > CMSResponse_Base::m_Hitsets

private

Definition at line 434 of file MSResponse_.hpp.

Referenced by CMSResponse_Base::GetHitsets(), CMSResponse_Base::ResetHitsets(), and CMSResponse_Base::SetHitsets().

m_Ids [1/2]

list< string > CMSHitSet_Base::m_Ids

private

Definition at line 381 of file MSHitSet_.hpp.

Referenced by CMSHitSet_Base::GetIds(), CMSHitSet_Base::ResetIds(), and CMSHitSet_Base::SetIds().

m_Ids [2/2]

list< string > CMSSpectrum_Base::m_Ids

private

Definition at line 409 of file MSSpectrum_.hpp.

Referenced by CMSSpectrum_Base::GetIds(), CMSSpectrum_Base::ResetIds(), and CMSSpectrum_Base::SetIds().

m_Immonium

CRef< TImmonium > CMSIon_Base::m_Immonium

private

Definition at line 277 of file MSIon_.hpp.

Referenced by CMSIon_Base::GetImmonium(), CMSIon_Base::IsSetImmonium(), CMSIon_Base::ResetImmonium(), and CMSIon_Base::SetImmonium().

m_Includerequest

bool CMSOutFile_Base::m_Includerequest

private

Definition at line 230 of file MSOutFile_.hpp.

Referenced by CMSOutFile_Base::GetIncluderequest(), CMSOutFile_Base::ResetIncluderequest(), and CMSOutFile_Base::SetIncluderequest().

m_Index

int CMSMZHit_Base::m_Index

private

Definition at line 396 of file MSMZHit_.hpp.

Referenced by CMSMZHit_Base::GetIndex(), CMSMZHit_Base::ResetIndex(), and CMSMZHit_Base::SetIndex().

m_Infile

string CMSInFile_Base::m_Infile

private

Definition at line 188 of file MSInFile_.hpp.

Referenced by CMSInFile_Base::GetInfile(), CMSInFile_Base::ResetInfile(), and CMSInFile_Base::SetInfile().

m_Infiles

list< CRef< CMSInFile > > CMSSearchSettings_Base::m_Infiles

private

Definition at line 2271 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetInfiles(), CMSSearchSettings_Base::ResetInfiles(), and CMSSearchSettings_Base::SetInfiles().

m_Infiletype

int CMSInFile_Base::m_Infiletype

private

Definition at line 189 of file MSInFile_.hpp.

Referenced by CMSInFile_Base::GetInfiletype(), CMSInFile_Base::ResetInfiletype(), and CMSInFile_Base::SetInfiletype().

m_Internal

string CMSIon_Base::m_Internal

private

Definition at line 276 of file MSIon_.hpp.

Referenced by CMSIon_Base::GetInternal(), CMSIon_Base::ResetInternal(), and CMSIon_Base::SetInternal().

m_Ion

int CMSMZHit_Base::m_Ion

private

Definition at line 392 of file MSMZHit_.hpp.

Referenced by CMSMZHit_Base::GetIon(), CMSMZHit_Base::ResetIon(), and CMSMZHit_Base::SetIon().

m_Ionstosearch

list< int > CMSSearchSettings_Base::m_Ionstosearch

private

Definition at line 2235 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetIonstosearch(), CMSSearchSettings_Base::ResetIonstosearch(), and CMSSearchSettings_Base::SetIonstosearch().

m_Iscale

double CMSSpectrum_Base::m_Iscale

private

Definition at line 408 of file MSSpectrum_.hpp.

Referenced by CMSSpectrum_Base::GetIscale(), CMSSpectrum_Base::ResetIscale(), and CMSSpectrum_Base::SetIscale().

m_Isotope

int CMSIon_Base::m_Isotope

private

Definition at line 275 of file MSIon_.hpp.

Referenced by CMSIon_Base::GetIsotope(), CMSIon_Base::ResetIsotope(), and CMSIon_Base::SetIsotope().

m_Iterativesettings

CRef< TIterativesettings > CMSSearchSettings_Base::m_Iterativesettings

private

Definition at line 2269 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetIterativesettings(), CMSSearchSettings_Base::IsSetIterativesettings(), CMSSearchSettings_Base::ResetIterativesettings(), and CMSSearchSettings_Base::SetIterativesettings().

m_Libaccession

string CMSHits_Base::m_Libaccession

private

Definition at line 709 of file MSHits_.hpp.

Referenced by CMSHits_Base::GetLibaccession(), CMSHits_Base::ResetLibaccession(), and CMSHits_Base::SetLibaccession().

m_Libnames

list< string > CMSLibrarySettings_Base::m_Libnames

private

Definition at line 302 of file MSLibrarySettings_.hpp.

Referenced by CMSLibrarySettings_Base::GetLibnames(), CMSLibrarySettings_Base::ResetLibnames(), and CMSLibrarySettings_Base::SetLibnames().

m_Libsearchsettings

CRef< TLibsearchsettings > CMSSearchSettings_Base::m_Libsearchsettings

private

Definition at line 2278 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetLibsearchsettings(), CMSSearchSettings_Base::IsSetLibsearchsettings(), CMSSearchSettings_Base::ResetLibsearchsettings(), and CMSSearchSettings_Base::SetLibsearchsettings().

m_Lomasscutoff

double CMSSearchSettings_Base::m_Lomasscutoff

private

Definition at line 2277 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetLomasscutoff(), CMSSearchSettings_Base::ResetLomasscutoff(), and CMSSearchSettings_Base::SetLomasscutoff().

m_Mass

int CMSHits_Base::m_Mass

private

Definition at line 701 of file MSHits_.hpp.

Referenced by CMSHits_Base::GetMass(), CMSHits_Base::ResetMass(), and CMSHits_Base::SetMass().

m_Massdiff

double CMSIonAnnot_Base::m_Massdiff

private

Definition at line 224 of file MSIonAnnot_.hpp.

Referenced by CMSIonAnnot_Base::GetMassdiff(), CMSIonAnnot_Base::ResetMassdiff(), and CMSIonAnnot_Base::SetMassdiff().

m_Maxcharge

int CMSChargeHandle_Base::m_Maxcharge

private

Definition at line 489 of file MSChargeHandle_.hpp.

Referenced by CMSChargeHandle_Base::GetMaxcharge(), CMSChargeHandle_Base::ResetMaxcharge(), and CMSChargeHandle_Base::SetMaxcharge().

m_Maxmods

int CMSSearchSettings_Base::m_Maxmods

private

Definition at line 2257 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetMaxmods(), CMSSearchSettings_Base::ResetMaxmods(), and CMSSearchSettings_Base::SetMaxmods().

m_Maxnoenzyme

int CMSSearchSettings_Base::m_Maxnoenzyme

private

Definition at line 2266 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetMaxnoenzyme(), CMSSearchSettings_Base::ResetMaxnoenzyme(), and CMSSearchSettings_Base::SetMaxnoenzyme().

m_Maxproductcharge

int CMSChargeHandle_Base::m_Maxproductcharge

private

Definition at line 492 of file MSChargeHandle_.hpp.

Referenced by CMSChargeHandle_Base::GetMaxproductcharge(), CMSChargeHandle_Base::ResetMaxproductcharge(), and CMSChargeHandle_Base::SetMaxproductcharge().

m_Maxproductions

int CMSSearchSettings_Base::m_Maxproductions

private

Definition at line 2264 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetMaxproductions(), CMSSearchSettings_Base::ResetMaxproductions(), and CMSSearchSettings_Base::SetMaxproductions().

m_Mincharge

int CMSChargeHandle_Base::m_Mincharge

private

Definition at line 488 of file MSChargeHandle_.hpp.

Referenced by CMSChargeHandle_Base::GetMincharge(), CMSChargeHandle_Base::ResetMincharge(), and CMSChargeHandle_Base::SetMincharge().

m_Minhit

int CMSSearchSettings_Base::m_Minhit

private

Definition at line 2254 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetMinhit(), CMSSearchSettings_Base::ResetMinhit(), and CMSSearchSettings_Base::SetMinhit().

m_Minnoenzyme

int CMSSearchSettings_Base::m_Minnoenzyme

private

Definition at line 2265 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetMinnoenzyme(), CMSSearchSettings_Base::ResetMinnoenzyme(), and CMSSearchSettings_Base::SetMinnoenzyme().

m_Minspectra

int CMSSearchSettings_Base::m_Minspectra

private

Definition at line 2255 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetMinspectra(), CMSSearchSettings_Base::ResetMinspectra(), and CMSSearchSettings_Base::SetMinspectra().

m_Missedcleave

int CMSSearchSettings_Base::m_Missedcleave

private

Definition at line 2250 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetMissedcleave(), CMSSearchSettings_Base::ResetMissedcleave(), and CMSSearchSettings_Base::SetMissedcleave().

m_Missingisotope

bool CMSIonAnnot_Base::m_Missingisotope

private

Definition at line 225 of file MSIonAnnot_.hpp.

Referenced by CMSIonAnnot_Base::GetMissingisotope(), CMSIonAnnot_Base::ResetMissingisotope(), and CMSIonAnnot_Base::SetMissingisotope().

m_Mod

int CMSModSpec_Base::m_Mod

private

Definition at line 510 of file MSModSpec_.hpp.

Referenced by CMSModSpec_Base::GetMod(), CMSModSpec_Base::ResetMod(), and CMSModSpec_Base::SetMod().

m_Mods

list< CRef< CMSModHit > > CMSHits_Base::m_Mods

private

Definition at line 702 of file MSHits_.hpp.

Referenced by CMSHits_Base::GetMods(), CMSHits_Base::ResetMods(), and CMSHits_Base::SetMods().

m_Modset

CRef< TModset > CMSRequest_Base::m_Modset

private

Definition at line 319 of file MSRequest_.hpp.

Referenced by CMSRequest_Base::GetModset(), CMSRequest_Base::IsSetModset(), CMSRequest_Base::ResetModset(), and CMSRequest_Base::SetModset().

m_Modtype

int CMSModHit_Base::m_Modtype

private

Definition at line 188 of file MSModHit_.hpp.

Referenced by CMSModHit_Base::GetModtype(), CMSModHit_Base::ResetModtype(), and CMSModHit_Base::SetModtype().

m_Monomass [1/2]

double CMSMassSet_Base::m_Monomass

private

Definition at line 220 of file MSMassSet_.hpp.

Referenced by CMSMassSet_Base::GetMonomass(), CMSMassSet_Base::ResetMonomass(), and CMSMassSet_Base::SetMonomass().

m_Monomass [2/2]

double CMSModSpec_Base::m_Monomass

private

Definition at line 513 of file MSModSpec_.hpp.

Referenced by CMSModSpec_Base::GetMonomass(), CMSModSpec_Base::ResetMonomass(), and CMSModSpec_Base::SetMonomass().

m_Moreion

CRef< TMoreion > CMSMZHit_Base::m_Moreion

private

Definition at line 397 of file MSMZHit_.hpp.

Referenced by CMSMZHit_Base::GetMoreion(), CMSMZHit_Base::IsSetMoreion(), CMSMZHit_Base::ResetMoreion(), and CMSMZHit_Base::SetMoreion().

m_Moresettings

CRef< TMoresettings > CMSRequest_Base::m_Moresettings

private

Definition at line 318 of file MSRequest_.hpp.

Referenced by CMSRequest_Base::GetMoresettings(), CMSRequest_Base::IsSetMoresettings(), CMSRequest_Base::ResetMoresettings(), and CMSRequest_Base::SetMoresettings().

m_Msmsppm

bool CMSSearchSettings_Base::m_Msmsppm

private

Definition at line 2284 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetMsmsppm(), CMSSearchSettings_Base::ResetMsmsppm(), and CMSSearchSettings_Base::SetMsmsppm().

m_Msmstol

double CMSSearchSettings_Base::m_Msmstol

private

Definition at line 2237 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetMsmstol(), CMSSearchSettings_Base::ResetMsmstol(), and CMSSearchSettings_Base::SetMsmstol().

m_Mz [1/2]

int CMSMZHit_Base::m_Mz

private

Definition at line 395 of file MSMZHit_.hpp.

Referenced by CMSMZHit_Base::GetMz(), CMSMZHit_Base::ResetMz(), and CMSMZHit_Base::SetMz().

m_Mz [2/2]

vector< int > CMSSpectrum_Base::m_Mz

private

Definition at line 406 of file MSSpectrum_.hpp.

Referenced by CMSSpectrum_Base::GetMz(), CMSSpectrum_Base::ResetMz(), and CMSSpectrum_Base::SetMz().

m_Mzhits

list< CRef< CMSMZHit > > CMSHits_Base::m_Mzhits

private

Definition at line 699 of file MSHits_.hpp.

Referenced by CMSHits_Base::GetMzhits(), CMSHits_Base::ResetMzhits(), and CMSHits_Base::SetMzhits().

m_N15mass [1/2]

double CMSMassSet_Base::m_N15mass

private

Definition at line 222 of file MSMassSet_.hpp.

Referenced by CMSMassSet_Base::GetN15mass(), CMSMassSet_Base::ResetN15mass(), and CMSMassSet_Base::SetN15mass().

m_N15mass [2/2]

double CMSModSpec_Base::m_N15mass

private

Definition at line 515 of file MSModSpec_.hpp.

Referenced by CMSModSpec_Base::GetN15mass(), CMSModSpec_Base::ResetN15mass(), and CMSModSpec_Base::SetN15mass().

m_Name [1/3]

string CMSModSpec_Base::m_Name

private

Definition at line 512 of file MSModSpec_.hpp.

Referenced by CMSModSpec_Base::GetName(), CMSModSpec_Base::ResetName(), and CMSModSpec_Base::SetName().

m_Name [2/3]

string CMSScoreSet_Base::m_Name

private

Definition at line 186 of file MSScoreSet_.hpp.

Referenced by CMSScoreSet_Base::GetName(), CMSScoreSet_Base::ResetName(), and CMSScoreSet_Base::SetName().

m_Name [3/3]

string CNameValue_Base::m_Name

private

Definition at line 187 of file NameValue_.hpp.

Referenced by CNameValue_Base::GetName(), CNameValue_Base::ResetName(), and CNameValue_Base::SetName().

m_Namevalue [1/2]

list< CRef< CNameValue > > CMSHitSet_Base::m_Namevalue

private

Definition at line 382 of file MSHitSet_.hpp.

Referenced by CMSHitSet_Base::GetNamevalue(), CMSHitSet_Base::ResetNamevalue(), and CMSHitSet_Base::SetNamevalue().

m_Namevalue [2/2]

list< CRef< CNameValue > > CMSSpectrum_Base::m_Namevalue

private

Definition at line 410 of file MSSpectrum_.hpp.

Referenced by CMSSpectrum_Base::GetNamevalue(), CMSSpectrum_Base::ResetNamevalue(), and CMSSpectrum_Base::SetNamevalue().

m_Negative

int CMSChargeHandle_Base::m_Negative

private

Definition at line 494 of file MSChargeHandle_.hpp.

Referenced by CMSChargeHandle_Base::GetNegative(), CMSChargeHandle_Base::ResetNegative(), and CMSChargeHandle_Base::SetNegative().

m_Neutralloss [1/2]

int CMSIon_Base::m_Neutralloss

private

Definition at line 274 of file MSIon_.hpp.

Referenced by CMSIon_Base::GetNeutralloss(), CMSIon_Base::ResetNeutralloss(), and CMSIon_Base::SetNeutralloss().

m_Neutralloss [2/2]

CRef< TNeutralloss > CMSModSpec_Base::m_Neutralloss

private

Definition at line 517 of file MSModSpec_.hpp.

Referenced by CMSModSpec_Base::GetNeutralloss(), CMSModSpec_Base::IsSetNeutralloss(), CMSModSpec_Base::ResetNeutralloss(), and CMSModSpec_Base::SetNeutralloss().

m_Nmethionine

bool CMSSearchSettings_Base::m_Nmethionine

private

Definition at line 2275 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetNmethionine(), CMSSearchSettings_Base::ResetNmethionine(), and CMSSearchSettings_Base::SetNmethionine().

m_Nocorrelationscore

int CMSSearchSettings_Base::m_Nocorrelationscore

private

Definition at line 2273 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetNocorrelationscore(), CMSSearchSettings_Base::ResetNocorrelationscore(), and CMSSearchSettings_Base::SetNocorrelationscore().

m_Noprolineions

list< int > CMSSearchSettings_Base::m_Noprolineions

private

Definition at line 2279 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetNoprolineions(), CMSSearchSettings_Base::ResetNoprolineions(), and CMSSearchSettings_Base::SetNoprolineions().

m_Number [1/3]

int CMSHitSet_Base::m_Number

private

Definition at line 378 of file MSHitSet_.hpp.

Referenced by CMSHitSet_Base::GetNumber(), CMSHitSet_Base::ResetNumber(), and CMSHitSet_Base::SetNumber().

m_Number [2/3]

int CMSMZHit_Base::m_Number

private

Definition at line 394 of file MSMZHit_.hpp.

Referenced by CMSMZHit_Base::GetNumber(), CMSMZHit_Base::ResetNumber(), and CMSMZHit_Base::SetNumber().

m_Number [3/3]

int CMSSpectrum_Base::m_Number

private

Definition at line 403 of file MSSpectrum_.hpp.

Referenced by CMSSpectrum_Base::GetNumber(), CMSSpectrum_Base::ResetNumber(), and CMSSpectrum_Base::SetNumber().

m_Numisotopes

int CMSSearchSettings_Base::m_Numisotopes

private

Definition at line 2282 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetNumisotopes(), CMSSearchSettings_Base::ResetNumisotopes(), and CMSSearchSettings_Base::SetNumisotopes().

m_Oid [1/3]

int CMSBioseq_Base::m_Oid

private

Definition at line 186 of file MSBioseq_.hpp.

Referenced by CMSBioseq_Base::GetOid(), CMSBioseq_Base::ResetOid(), and CMSBioseq_Base::SetOid().

m_Oid [2/3]

int CMSHits_Base::m_Oid

private

Definition at line 707 of file MSHits_.hpp.

Referenced by CMSHits_Base::GetOid(), CMSHits_Base::ResetOid(), and CMSHits_Base::SetOid().

m_Oid [3/3]

int CMSPepHit_Base::m_Oid

private

Definition at line 518 of file MSPepHit_.hpp.

Referenced by CMSPepHit_Base::GetOid(), CMSPepHit_Base::ResetOid(), and CMSPepHit_Base::SetOid().

m_Othersettings

list< CRef< CNameValue > > CMSSearchSettings_Base::m_Othersettings

private

Definition at line 2281 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetOthersettings(), CMSSearchSettings_Base::ResetOthersettings(), and CMSSearchSettings_Base::SetOthersettings().

m_Outfile

string CMSOutFile_Base::m_Outfile

private

Definition at line 228 of file MSOutFile_.hpp.

Referenced by CMSOutFile_Base::GetOutfile(), CMSOutFile_Base::ResetOutfile(), and CMSOutFile_Base::SetOutfile().

m_Outfiles

list< CRef< CMSOutFile > > CMSSearchSettings_Base::m_Outfiles

private

Definition at line 2272 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetOutfiles(), CMSSearchSettings_Base::ResetOutfiles(), and CMSSearchSettings_Base::SetOutfiles().

m_Outfiletype

int CMSOutFile_Base::m_Outfiletype

private

Definition at line 229 of file MSOutFile_.hpp.

Referenced by CMSOutFile_Base::GetOutfiletype(), CMSOutFile_Base::ResetOutfiletype(), and CMSOutFile_Base::SetOutfiletype().

m_Parent

string CMSImmonium_Base::m_Parent

private

Definition at line 189 of file MSImmonium_.hpp.

Referenced by CMSImmonium_Base::GetParent(), CMSImmonium_Base::ResetParent(), and CMSImmonium_Base::SetParent().

m_Pephits

list< CRef< CMSPepHit > > CMSHits_Base::m_Pephits

private

Definition at line 698 of file MSHits_.hpp.

Referenced by CMSHits_Base::GetPephits(), CMSHits_Base::ResetPephits(), and CMSHits_Base::SetPephits().

m_Pepppm

bool CMSSearchSettings_Base::m_Pepppm

private

Definition at line 2283 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetPepppm(), CMSSearchSettings_Base::ResetPepppm(), and CMSSearchSettings_Base::SetPepppm().

m_Pepstart [1/2]

string CMSHits_Base::m_Pepstart

private

Definition at line 703 of file MSHits_.hpp.

Referenced by CMSHits_Base::GetPepstart(), CMSHits_Base::ResetPepstart(), and CMSHits_Base::SetPepstart().

m_Pepstart [2/2]

string CMSPepHit_Base::m_Pepstart

private

Definition at line 520 of file MSPepHit_.hpp.

Referenced by CMSPepHit_Base::GetPepstart(), CMSPepHit_Base::ResetPepstart(), and CMSPepHit_Base::SetPepstart().

m_Pepstop [1/2]

string CMSHits_Base::m_Pepstop

private

Definition at line 704 of file MSHits_.hpp.

Referenced by CMSHits_Base::GetPepstop(), CMSHits_Base::ResetPepstop(), and CMSHits_Base::SetPepstop().

m_Pepstop [2/2]

string CMSPepHit_Base::m_Pepstop

private

Definition at line 521 of file MSPepHit_.hpp.

Referenced by CMSPepHit_Base::GetPepstop(), CMSPepHit_Base::ResetPepstop(), and CMSPepHit_Base::SetPepstop().

m_Pepstring

string CMSHits_Base::m_Pepstring

private

Definition at line 700 of file MSHits_.hpp.

Referenced by CMSHits_Base::GetPepstring(), CMSHits_Base::ResetPepstring(), and CMSHits_Base::SetPepstring().

m_Peptol

double CMSSearchSettings_Base::m_Peptol

private

Definition at line 2236 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetPeptol(), CMSSearchSettings_Base::ResetPeptol(), and CMSSearchSettings_Base::SetPeptol().

m_Plusone

double CMSChargeHandle_Base::m_Plusone

private

Definition at line 491 of file MSChargeHandle_.hpp.

Referenced by CMSChargeHandle_Base::GetPlusone(), CMSChargeHandle_Base::ResetPlusone(), and CMSChargeHandle_Base::SetPlusone().

m_Precursorcull

int CMSSearchSettings_Base::m_Precursorcull

private

Definition at line 2270 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetPrecursorcull(), CMSSearchSettings_Base::ResetPrecursorcull(), and CMSSearchSettings_Base::SetPrecursorcull().

m_Precursormz

int CMSSpectrum_Base::m_Precursormz

private

Definition at line 405 of file MSSpectrum_.hpp.

Referenced by CMSSpectrum_Base::GetPrecursormz(), CMSSpectrum_Base::ResetPrecursormz(), and CMSSpectrum_Base::SetPrecursormz().

m_Precursorsearchtype

int CMSSearchSettings_Base::m_Precursorsearchtype

private

Definition at line 2233 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetPrecursorsearchtype(), CMSSearchSettings_Base::ResetPrecursorsearchtype(), and CMSSearchSettings_Base::SetPrecursorsearchtype().

m_Presearch

bool CMSLibrarySettings_Base::m_Presearch

private

Definition at line 303 of file MSLibrarySettings_.hpp.

Referenced by CMSLibrarySettings_Base::GetPresearch(), CMSLibrarySettings_Base::ResetPresearch(), and CMSLibrarySettings_Base::SetPresearch().

m_Probfollowingion

double CMSSearchSettings_Base::m_Probfollowingion

private

Definition at line 2274 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetProbfollowingion(), CMSSearchSettings_Base::ResetProbfollowingion(), and CMSSearchSettings_Base::SetProbfollowingion().

m_Prodlesspre

bool CMSChargeHandle_Base::m_Prodlesspre

private

Definition at line 493 of file MSChargeHandle_.hpp.

Referenced by CMSChargeHandle_Base::GetProdlesspre(), CMSChargeHandle_Base::ResetProdlesspre(), and CMSChargeHandle_Base::SetProdlesspre().

m_Product

string CMSImmonium_Base::m_Product

private

Definition at line 190 of file MSImmonium_.hpp.

Referenced by CMSImmonium_Base::GetProduct(), CMSImmonium_Base::ResetProduct(), and CMSImmonium_Base::SetProduct().

m_Productsearchtype

int CMSSearchSettings_Base::m_Productsearchtype

private

Definition at line 2234 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetProductsearchtype(), CMSSearchSettings_Base::ResetProductsearchtype(), and CMSSearchSettings_Base::SetProductsearchtype().

m_Protlength [1/2]

int CMSHits_Base::m_Protlength

private

Definition at line 705 of file MSHits_.hpp.

Referenced by CMSHits_Base::GetProtlength(), CMSHits_Base::ResetProtlength(), and CMSHits_Base::SetProtlength().

m_Protlength [2/2]

int CMSPepHit_Base::m_Protlength

private

Definition at line 517 of file MSPepHit_.hpp.

Referenced by CMSPepHit_Base::GetProtlength(), CMSPepHit_Base::ResetProtlength(), and CMSPepHit_Base::SetProtlength().

m_Pseudocount

int CMSSearchSettings_Base::m_Pseudocount

private

Definition at line 2261 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetPseudocount(), CMSSearchSettings_Base::ResetPseudocount(), and CMSSearchSettings_Base::SetPseudocount().

m_Psi_ms

string CMSModSpec_Base::m_Psi_ms

private

Definition at line 519 of file MSModSpec_.hpp.

Referenced by CMSModSpec_Base::GetPsi_ms(), CMSModSpec_Base::ResetPsi_ms(), and CMSModSpec_Base::SetPsi_ms().

m_Pvalue

double CMSHits_Base::m_Pvalue

private

Definition at line 696 of file MSHits_.hpp.

Referenced by CMSHits_Base::GetPvalue(), CMSHits_Base::ResetPvalue(), and CMSHits_Base::SetPvalue().

m_Qtofscore

bool CMSLibrarySettings_Base::m_Qtofscore

private

Definition at line 306 of file MSLibrarySettings_.hpp.

Referenced by CMSLibrarySettings_Base::GetQtofscore(), CMSLibrarySettings_Base::ResetQtofscore(), and CMSLibrarySettings_Base::SetQtofscore().

m_Replacethresh

double CMSIterativeSettings_Base::m_Replacethresh

private

Definition at line 225 of file MSIterativeSettings_.hpp.

Referenced by CMSIterativeSettings_Base::GetReplacethresh(), CMSIterativeSettings_Base::ResetReplacethresh(), and CMSIterativeSettings_Base::SetReplacethresh().

m_Reportedhitcount

int CMSSearchSettings_Base::m_Reportedhitcount

private

Definition at line 2285 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetReportedhitcount(), CMSSearchSettings_Base::ResetReportedhitcount(), and CMSSearchSettings_Base::SetReportedhitcount().

m_Request

list< CRef< CMSRequest > > CMSSearch_Base::m_Request

private

Definition at line 178 of file MSSearch_.hpp.

Referenced by CMSSearch_Base::GetRequest(), CMSSearch_Base::ResetRequest(), and CMSSearch_Base::SetRequest().

m_Researchthresh

double CMSIterativeSettings_Base::m_Researchthresh

private

Definition at line 223 of file MSIterativeSettings_.hpp.

Referenced by CMSIterativeSettings_Base::GetResearchthresh(), CMSIterativeSettings_Base::ResetResearchthresh(), and CMSIterativeSettings_Base::SetResearchthresh().

m_Residues

list< string > CMSModSpec_Base::m_Residues

private

Definition at line 516 of file MSModSpec_.hpp.

Referenced by CMSModSpec_Base::GetResidues(), CMSModSpec_Base::ResetResidues(), and CMSModSpec_Base::SetResidues().

m_Response

list< CRef< CMSResponse > > CMSSearch_Base::m_Response

private

Definition at line 179 of file MSSearch_.hpp.

Referenced by CMSSearch_Base::GetResponse(), CMSSearch_Base::ResetResponse(), and CMSSearch_Base::SetResponse().

m_Reversed

bool CMSPepHit_Base::m_Reversed

private

Definition at line 519 of file MSPepHit_.hpp.

Referenced by CMSPepHit_Base::GetReversed(), CMSPepHit_Base::ResetReversed(), and CMSPepHit_Base::SetReversed().

m_Reversesearch

bool CMSSearchSettings_Base::m_Reversesearch

private

Definition at line 2280 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetReversesearch(), CMSSearchSettings_Base::ResetReversesearch(), and CMSSearchSettings_Base::SetReversesearch().

m_Rid [1/2]

string CMSRequest_Base::m_Rid

private

Definition at line 317 of file MSRequest_.hpp.

Referenced by CMSRequest_Base::GetRid(), CMSRequest_Base::ResetRid(), and CMSRequest_Base::SetRid().

m_Rid [2/2]

string CMSResponse_Base::m_Rid

private

Definition at line 436 of file MSResponse_.hpp.

Referenced by CMSResponse_Base::GetRid(), CMSResponse_Base::ResetRid(), and CMSResponse_Base::SetRid().

m_Scale [1/2]

int CMSResponse_Base::m_Scale

private

Definition at line 435 of file MSResponse_.hpp.

Referenced by CMSResponse_Base::GetScale(), CMSResponse_Base::ResetScale(), and CMSResponse_Base::SetScale().

m_Scale [2/2]

int CMSSearchSettings_Base::m_Scale

private

Definition at line 2256 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetScale(), CMSSearchSettings_Base::ResetScale(), and CMSSearchSettings_Base::SetScale().

m_Scores

list< CRef< CMSScoreSet > > CMSHits_Base::m_Scores

private

Definition at line 708 of file MSHits_.hpp.

Referenced by CMSHits_Base::GetScores(), CMSHits_Base::ResetScores(), and CMSHits_Base::SetScores().

m_Searchb1

int CMSSearchSettings_Base::m_Searchb1

private

Definition at line 2262 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetSearchb1(), CMSSearchSettings_Base::ResetSearchb1(), and CMSSearchSettings_Base::SetSearchb1().

m_Searchctermproduct

int CMSSearchSettings_Base::m_Searchctermproduct

private

Definition at line 2263 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetSearchctermproduct(), CMSSearchSettings_Base::ResetSearchctermproduct(), and CMSSearchSettings_Base::SetSearchctermproduct().

m_Seq

CRef< TSeq > CMSBioseq_Base::m_Seq

private

Definition at line 187 of file MSBioseq_.hpp.

Referenced by CMSBioseq_Base::GetSeq(), CMSBioseq_Base::IsSetSeq(), CMSBioseq_Base::ResetSeq(), and CMSBioseq_Base::SetSeq().

m_set_State [1/27]

Uint4 CMSBioseq_Base::m_set_State[1]

private

Definition at line 185 of file MSBioseq_.hpp.

Referenced by CMSBioseq_Base::CMSBioseq_Base(), CMSBioseq_Base::IsSetOid(), CMSBioseq_Base::ResetOid(), and CMSBioseq_Base::SetOid().

m_set_State [2/27]

Uint4 CMSBioseqSet_Base::m_set_State[1]

private

Definition at line 138 of file MSBioseqSet_.hpp.

Referenced by CMSBioseqSet_Base::CMSBioseqSet_Base(), CMSBioseqSet_Base::IsSet(), CMSBioseqSet_Base::Reset(), and CMSBioseqSet_Base::Set().

m_set_State [3/27]

Uint4 CMSChargeHandle_Base::m_set_State[1]

private

Definition at line 485 of file MSChargeHandle_.hpp.

Referenced by CMSChargeHandle_Base::CMSChargeHandle_Base(), CMSChargeHandle_Base::IsSetCalccharge(), CMSChargeHandle_Base::IsSetCalcplusone(), CMSChargeHandle_Base::IsSetConsidermult(), CMSChargeHandle_Base::IsSetMaxcharge(), CMSChargeHandle_Base::IsSetMaxproductcharge(), CMSChargeHandle_Base::IsSetMincharge(), CMSChargeHandle_Base::IsSetNegative(), CMSChargeHandle_Base::IsSetPlusone(), CMSChargeHandle_Base::IsSetProdlesspre(), CMSChargeHandle_Base::ResetCalccharge(), CMSChargeHandle_Base::ResetCalcplusone(), CMSChargeHandle_Base::ResetConsidermult(), CMSChargeHandle_Base::ResetMaxcharge(), CMSChargeHandle_Base::ResetMaxproductcharge(), CMSChargeHandle_Base::ResetMincharge(), CMSChargeHandle_Base::ResetNegative(), CMSChargeHandle_Base::ResetPlusone(), CMSChargeHandle_Base::ResetProdlesspre(), CMSChargeHandle_Base::SetCalccharge(), CMSChargeHandle_Base::SetCalcplusone(), CMSChargeHandle_Base::SetConsidermult(), CMSChargeHandle_Base::SetMaxcharge(), CMSChargeHandle_Base::SetMaxproductcharge(), CMSChargeHandle_Base::SetMincharge(), CMSChargeHandle_Base::SetNegative(), CMSChargeHandle_Base::SetPlusone(), and CMSChargeHandle_Base::SetProdlesspre().

m_set_State [4/27]

Uint4 CMSHits_Base::m_set_State[1]

private

Definition at line 694 of file MSHits_.hpp.

Referenced by CMSHits_Base::CMSHits_Base(), CMSHits_Base::IsSetCharge(), CMSHits_Base::IsSetEvalue(), CMSHits_Base::IsSetLibaccession(), CMSHits_Base::IsSetMass(), CMSHits_Base::IsSetMods(), CMSHits_Base::IsSetMzhits(), CMSHits_Base::IsSetOid(), CMSHits_Base::IsSetPephits(), CMSHits_Base::IsSetPepstart(), CMSHits_Base::IsSetPepstop(), CMSHits_Base::IsSetPepstring(), CMSHits_Base::IsSetProtlength(), CMSHits_Base::IsSetPvalue(), CMSHits_Base::IsSetScores(), CMSHits_Base::IsSetTheomass(), CMSHits_Base::ResetCharge(), CMSHits_Base::ResetEvalue(), CMSHits_Base::ResetLibaccession(), CMSHits_Base::ResetMass(), CMSHits_Base::ResetMods(), CMSHits_Base::ResetMzhits(), CMSHits_Base::ResetOid(), CMSHits_Base::ResetPephits(), CMSHits_Base::ResetPepstart(), CMSHits_Base::ResetPepstop(), CMSHits_Base::ResetPepstring(), CMSHits_Base::ResetProtlength(), CMSHits_Base::ResetPvalue(), CMSHits_Base::ResetScores(), CMSHits_Base::ResetTheomass(), CMSHits_Base::SetCharge(), CMSHits_Base::SetEvalue(), CMSHits_Base::SetLibaccession(), CMSHits_Base::SetMass(), CMSHits_Base::SetMods(), CMSHits_Base::SetMzhits(), CMSHits_Base::SetOid(), CMSHits_Base::SetPephits(), CMSHits_Base::SetPepstart(), CMSHits_Base::SetPepstop(), CMSHits_Base::SetPepstring(), CMSHits_Base::SetProtlength(), CMSHits_Base::SetPvalue(), CMSHits_Base::SetScores(), and CMSHits_Base::SetTheomass().

m_set_State [5/27]

Uint4 CMSHitSet_Base::m_set_State[1]

private

Definition at line 377 of file MSHitSet_.hpp.

Referenced by CMSHitSet_Base::CMSHitSet_Base(), CMSHitSet_Base::IsSetError(), CMSHitSet_Base::IsSetHits(), CMSHitSet_Base::IsSetIds(), CMSHitSet_Base::IsSetNamevalue(), CMSHitSet_Base::IsSetNumber(), CMSHitSet_Base::IsSetSettingid(), CMSHitSet_Base::IsSetUserannotation(), CMSHitSet_Base::ResetError(), CMSHitSet_Base::ResetHits(), CMSHitSet_Base::ResetIds(), CMSHitSet_Base::ResetNamevalue(), CMSHitSet_Base::ResetNumber(), CMSHitSet_Base::ResetSettingid(), CMSHitSet_Base::ResetUserannotation(), CMSHitSet_Base::SetError(), CMSHitSet_Base::SetHits(), CMSHitSet_Base::SetIds(), CMSHitSet_Base::SetNamevalue(), CMSHitSet_Base::SetNumber(), CMSHitSet_Base::SetSettingid(), and CMSHitSet_Base::SetUserannotation().

m_set_State [6/27]

Uint4 CMSImmonium_Base::m_set_State[1]

private

Definition at line 188 of file MSImmonium_.hpp.

Referenced by CMSImmonium_Base::CMSImmonium_Base(), CMSImmonium_Base::IsSetParent(), CMSImmonium_Base::IsSetProduct(), CMSImmonium_Base::ResetParent(), CMSImmonium_Base::ResetProduct(), CMSImmonium_Base::SetParent(), and CMSImmonium_Base::SetProduct().

m_set_State [7/27]

Uint4 CMSInFile_Base::m_set_State[1]

private

Definition at line 187 of file MSInFile_.hpp.

Referenced by CMSInFile_Base::CMSInFile_Base(), CMSInFile_Base::IsSetInfile(), CMSInFile_Base::IsSetInfiletype(), CMSInFile_Base::ResetInfile(), CMSInFile_Base::ResetInfiletype(), CMSInFile_Base::SetInfile(), and CMSInFile_Base::SetInfiletype().

m_set_State [8/27]

Uint4 CMSIon_Base::m_set_State[1]

private

Definition at line 273 of file MSIon_.hpp.

Referenced by CMSIon_Base::CMSIon_Base(), CMSIon_Base::IsSetInternal(), CMSIon_Base::IsSetIsotope(), CMSIon_Base::IsSetNeutralloss(), CMSIon_Base::ResetInternal(), CMSIon_Base::ResetIsotope(), CMSIon_Base::ResetNeutralloss(), CMSIon_Base::SetInternal(), CMSIon_Base::SetIsotope(), and CMSIon_Base::SetNeutralloss().

m_set_State [9/27]

Uint4 CMSIonAnnot_Base::m_set_State[1]

private

Definition at line 222 of file MSIonAnnot_.hpp.

Referenced by CMSIonAnnot_Base::CMSIonAnnot_Base(), CMSIonAnnot_Base::IsSetMassdiff(), CMSIonAnnot_Base::IsSetMissingisotope(), CMSIonAnnot_Base::IsSetSuspect(), CMSIonAnnot_Base::ResetMassdiff(), CMSIonAnnot_Base::ResetMissingisotope(), CMSIonAnnot_Base::ResetSuspect(), CMSIonAnnot_Base::SetMassdiff(), CMSIonAnnot_Base::SetMissingisotope(), and CMSIonAnnot_Base::SetSuspect().

m_set_State [10/27]

Uint4 CMSIterativeSettings_Base::m_set_State[1]

private

Definition at line 222 of file MSIterativeSettings_.hpp.

Referenced by CMSIterativeSettings_Base::CMSIterativeSettings_Base(), CMSIterativeSettings_Base::IsSetReplacethresh(), CMSIterativeSettings_Base::IsSetResearchthresh(), CMSIterativeSettings_Base::IsSetSubsetthresh(), CMSIterativeSettings_Base::ResetReplacethresh(), CMSIterativeSettings_Base::ResetResearchthresh(), CMSIterativeSettings_Base::ResetSubsetthresh(), CMSIterativeSettings_Base::SetReplacethresh(), CMSIterativeSettings_Base::SetResearchthresh(), and CMSIterativeSettings_Base::SetSubsetthresh().

m_set_State [11/27]

Uint4 CMSLibrarySettings_Base::m_set_State[1]

private

Definition at line 301 of file MSLibrarySettings_.hpp.

Referenced by CMSLibrarySettings_Base::CMSLibrarySettings_Base(), CMSLibrarySettings_Base::IsSetLibnames(), CMSLibrarySettings_Base::IsSetPresearch(), CMSLibrarySettings_Base::IsSetQtofscore(), CMSLibrarySettings_Base::IsSetUseomssascore(), CMSLibrarySettings_Base::IsSetUsereplicatescore(), CMSLibrarySettings_Base::ResetLibnames(), CMSLibrarySettings_Base::ResetPresearch(), CMSLibrarySettings_Base::ResetQtofscore(), CMSLibrarySettings_Base::ResetUseomssascore(), CMSLibrarySettings_Base::ResetUsereplicatescore(), CMSLibrarySettings_Base::SetLibnames(), CMSLibrarySettings_Base::SetPresearch(), CMSLibrarySettings_Base::SetQtofscore(), CMSLibrarySettings_Base::SetUseomssascore(), and CMSLibrarySettings_Base::SetUsereplicatescore().

m_set_State [12/27]

Uint4 CMSMassSet_Base::m_set_State[1]

private

Definition at line 219 of file MSMassSet_.hpp.

Referenced by CMSMassSet_Base::CMSMassSet_Base(), CMSMassSet_Base::IsSetAveragemass(), CMSMassSet_Base::IsSetMonomass(), CMSMassSet_Base::IsSetN15mass(), CMSMassSet_Base::ResetAveragemass(), CMSMassSet_Base::ResetMonomass(), CMSMassSet_Base::ResetN15mass(), CMSMassSet_Base::SetAveragemass(), CMSMassSet_Base::SetMonomass(), and CMSMassSet_Base::SetN15mass().

m_set_State [13/27]

Uint4 CMSModHit_Base::m_set_State[1]

private

Definition at line 186 of file MSModHit_.hpp.

Referenced by CMSModHit_Base::CMSModHit_Base(), CMSModHit_Base::IsSetModtype(), CMSModHit_Base::IsSetSite(), CMSModHit_Base::ResetModtype(), CMSModHit_Base::ResetSite(), CMSModHit_Base::SetModtype(), and CMSModHit_Base::SetSite().

m_set_State [14/27]

Uint4 CMSModSpec_Base::m_set_State[1]

private

Definition at line 509 of file MSModSpec_.hpp.

Referenced by CMSModSpec_Base::CMSModSpec_Base(), CMSModSpec_Base::IsSetAveragemass(), CMSModSpec_Base::IsSetMod(), CMSModSpec_Base::IsSetMonomass(), CMSModSpec_Base::IsSetN15mass(), CMSModSpec_Base::IsSetName(), CMSModSpec_Base::IsSetPsi_ms(), CMSModSpec_Base::IsSetResidues(), CMSModSpec_Base::IsSetType(), CMSModSpec_Base::IsSetUnimod(), CMSModSpec_Base::ResetAveragemass(), CMSModSpec_Base::ResetMod(), CMSModSpec_Base::ResetMonomass(), CMSModSpec_Base::ResetN15mass(), CMSModSpec_Base::ResetName(), CMSModSpec_Base::ResetPsi_ms(), CMSModSpec_Base::ResetResidues(), CMSModSpec_Base::ResetType(), CMSModSpec_Base::ResetUnimod(), CMSModSpec_Base::SetAveragemass(), CMSModSpec_Base::SetMod(), CMSModSpec_Base::SetMonomass(), CMSModSpec_Base::SetN15mass(), CMSModSpec_Base::SetName(), CMSModSpec_Base::SetPsi_ms(), CMSModSpec_Base::SetResidues(), CMSModSpec_Base::SetType(), and CMSModSpec_Base::SetUnimod().

m_set_State [15/27]

Uint4 CMSModSpecSet_Base::m_set_State[1]

private

Definition at line 139 of file MSModSpecSet_.hpp.

Referenced by CMSModSpecSet_Base::CMSModSpecSet_Base(), CMSModSpecSet_Base::IsSet(), CMSModSpecSet_Base::Reset(), and CMSModSpecSet_Base::Set().

m_set_State [16/27]

Uint4 CMSMZHit_Base::m_set_State[1]

private

Definition at line 391 of file MSMZHit_.hpp.

Referenced by CMSMZHit_Base::CMSMZHit_Base(), CMSMZHit_Base::IsSetCharge(), CMSMZHit_Base::IsSetIndex(), CMSMZHit_Base::IsSetIon(), CMSMZHit_Base::IsSetMz(), CMSMZHit_Base::IsSetNumber(), CMSMZHit_Base::ResetCharge(), CMSMZHit_Base::ResetIndex(), CMSMZHit_Base::ResetIon(), CMSMZHit_Base::ResetMz(), CMSMZHit_Base::ResetNumber(), CMSMZHit_Base::SetCharge(), CMSMZHit_Base::SetIndex(), CMSMZHit_Base::SetIon(), CMSMZHit_Base::SetMz(), and CMSMZHit_Base::SetNumber().

m_set_State [17/27]

Uint4 CMSOutFile_Base::m_set_State[1]

private

Definition at line 227 of file MSOutFile_.hpp.

Referenced by CMSOutFile_Base::CMSOutFile_Base(), CMSOutFile_Base::IsSetIncluderequest(), CMSOutFile_Base::IsSetOutfile(), CMSOutFile_Base::IsSetOutfiletype(), CMSOutFile_Base::ResetIncluderequest(), CMSOutFile_Base::ResetOutfile(), CMSOutFile_Base::ResetOutfiletype(), CMSOutFile_Base::SetIncluderequest(), CMSOutFile_Base::SetOutfile(), and CMSOutFile_Base::SetOutfiletype().

m_set_State [18/27]

Uint4 CMSPepHit_Base::m_set_State[1]

private

Definition at line 511 of file MSPepHit_.hpp.

Referenced by CMSPepHit_Base::CMSPepHit_Base(), CMSPepHit_Base::IsSetAccession(), CMSPepHit_Base::IsSetDefline(), CMSPepHit_Base::IsSetGi(), CMSPepHit_Base::IsSetOid(), CMSPepHit_Base::IsSetPepstart(), CMSPepHit_Base::IsSetPepstop(), CMSPepHit_Base::IsSetProtlength(), CMSPepHit_Base::IsSetReversed(), CMSPepHit_Base::IsSetStart(), CMSPepHit_Base::IsSetStop(), CMSPepHit_Base::ResetAccession(), CMSPepHit_Base::ResetDefline(), CMSPepHit_Base::ResetGi(), CMSPepHit_Base::ResetOid(), CMSPepHit_Base::ResetPepstart(), CMSPepHit_Base::ResetPepstop(), CMSPepHit_Base::ResetProtlength(), CMSPepHit_Base::ResetReversed(), CMSPepHit_Base::ResetStart(), CMSPepHit_Base::ResetStop(), CMSPepHit_Base::SetAccession(), CMSPepHit_Base::SetDefline(), CMSPepHit_Base::SetGi(), CMSPepHit_Base::SetOid(), CMSPepHit_Base::SetPepstart(), CMSPepHit_Base::SetPepstop(), CMSPepHit_Base::SetProtlength(), CMSPepHit_Base::SetReversed(), CMSPepHit_Base::SetStart(), and CMSPepHit_Base::SetStop().

m_set_State [19/27]

Uint4 CMSRequest_Base::m_set_State[1]

private

Definition at line 314 of file MSRequest_.hpp.

Referenced by CMSRequest_Base::CMSRequest_Base(), CMSRequest_Base::IsSetRid(), CMSRequest_Base::ResetRid(), and CMSRequest_Base::SetRid().

m_set_State [20/27]

Uint4 CMSResponse_Base::m_set_State[1]

private

Definition at line 433 of file MSResponse_.hpp.

Referenced by CMSResponse_Base::CMSResponse_Base(), CMSResponse_Base::IsSetDbversion(), CMSResponse_Base::IsSetEmail(), CMSResponse_Base::IsSetError(), CMSResponse_Base::IsSetHitsets(), CMSResponse_Base::IsSetRid(), CMSResponse_Base::IsSetScale(), CMSResponse_Base::IsSetVersion(), CMSResponse_Base::ResetDbversion(), CMSResponse_Base::ResetEmail(), CMSResponse_Base::ResetError(), CMSResponse_Base::ResetHitsets(), CMSResponse_Base::ResetRid(), CMSResponse_Base::ResetScale(), CMSResponse_Base::ResetVersion(), CMSResponse_Base::SetDbversion(), CMSResponse_Base::SetEmail(), CMSResponse_Base::SetError(), CMSResponse_Base::SetHitsets(), CMSResponse_Base::SetRid(), CMSResponse_Base::SetScale(), and CMSResponse_Base::SetVersion().

m_set_State [21/27]

Uint4 CMSScoreSet_Base::m_set_State[1]

private

Definition at line 185 of file MSScoreSet_.hpp.

Referenced by CMSScoreSet_Base::CMSScoreSet_Base(), CMSScoreSet_Base::IsSetName(), CMSScoreSet_Base::IsSetValue(), CMSScoreSet_Base::ResetName(), CMSScoreSet_Base::ResetValue(), CMSScoreSet_Base::SetName(), and CMSScoreSet_Base::SetValue().

m_set_State [22/27]

Uint4 CMSSearch_Base::m_set_State[1]

private

Definition at line 177 of file MSSearch_.hpp.

Referenced by CMSSearch_Base::CMSSearch_Base(), CMSSearch_Base::IsSetRequest(), CMSSearch_Base::IsSetResponse(), CMSSearch_Base::ResetRequest(), CMSSearch_Base::ResetResponse(), CMSSearch_Base::SetRequest(), and CMSSearch_Base::SetResponse().

m_set_State [23/27]

Uint4 CMSSearchSettingsSet_Base::m_set_State[1]

private

Definition at line 138 of file MSSearchSettingsSet_.hpp.

Referenced by CMSSearchSettingsSet_Base::CMSSearchSettingsSet_Base(), CMSSearchSettingsSet_Base::IsSet(), CMSSearchSettingsSet_Base::Reset(), and CMSSearchSettingsSet_Base::Set().

m_set_State [24/27]

Uint4 CMSSpectrum_Base::m_set_State[1]

private

Definition at line 402 of file MSSpectrum_.hpp.

Referenced by CMSSpectrum_Base::CMSSpectrum_Base(), CMSSpectrum_Base::IsSetAbundance(), CMSSpectrum_Base::IsSetCharge(), CMSSpectrum_Base::IsSetIds(), CMSSpectrum_Base::IsSetIscale(), CMSSpectrum_Base::IsSetMz(), CMSSpectrum_Base::IsSetNamevalue(), CMSSpectrum_Base::IsSetNumber(), CMSSpectrum_Base::IsSetPrecursormz(), CMSSpectrum_Base::ResetAbundance(), CMSSpectrum_Base::ResetCharge(), CMSSpectrum_Base::ResetIds(), CMSSpectrum_Base::ResetIscale(), CMSSpectrum_Base::ResetMz(), CMSSpectrum_Base::ResetNamevalue(), CMSSpectrum_Base::ResetNumber(), CMSSpectrum_Base::ResetPrecursormz(), CMSSpectrum_Base::SetAbundance(), CMSSpectrum_Base::SetCharge(), CMSSpectrum_Base::SetIds(), CMSSpectrum_Base::SetIscale(), CMSSpectrum_Base::SetMz(), CMSSpectrum_Base::SetNamevalue(), CMSSpectrum_Base::SetNumber(), and CMSSpectrum_Base::SetPrecursormz().

m_set_State [25/27]

Uint4 CMSSpectrumset_Base::m_set_State[1]

private

Definition at line 139 of file MSSpectrumset_.hpp.

Referenced by CMSSpectrumset_Base::CMSSpectrumset_Base(), CMSSpectrumset_Base::IsSet(), CMSSpectrumset_Base::Reset(), and CMSSpectrumset_Base::Set().

m_set_State [26/27]

Uint4 CNameValue_Base::m_set_State[1]

private

Definition at line 186 of file NameValue_.hpp.

Referenced by CNameValue_Base::CNameValue_Base(), CNameValue_Base::IsSetName(), CNameValue_Base::IsSetValue(), CNameValue_Base::ResetName(), CNameValue_Base::ResetValue(), CNameValue_Base::SetName(), and CNameValue_Base::SetValue().

m_set_State [27/27]

Uint4 CMSSearchSettings_Base::m_set_State[4]

private

Definition at line 2232 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::CMSSearchSettings_Base(), CMSSearchSettings_Base::IsSetAutomassadjust(), CMSSearchSettings_Base::IsSetCuthi(), CMSSearchSettings_Base::IsSetCutinc(), CMSSearchSettings_Base::IsSetCutlo(), CMSSearchSettings_Base::IsSetCutoff(), CMSSearchSettings_Base::IsSetDb(), CMSSearchSettings_Base::IsSetDoublenum(), CMSSearchSettings_Base::IsSetDoublewin(), CMSSearchSettings_Base::IsSetEnzyme(), CMSSearchSettings_Base::IsSetExactmass(), CMSSearchSettings_Base::IsSetFixed(), CMSSearchSettings_Base::IsSetHitlistlen(), CMSSearchSettings_Base::IsSetInfiles(), CMSSearchSettings_Base::IsSetIonstosearch(), CMSSearchSettings_Base::IsSetLomasscutoff(), CMSSearchSettings_Base::IsSetMaxmods(), CMSSearchSettings_Base::IsSetMaxnoenzyme(), CMSSearchSettings_Base::IsSetMaxproductions(), CMSSearchSettings_Base::IsSetMinhit(), CMSSearchSettings_Base::IsSetMinnoenzyme(), CMSSearchSettings_Base::IsSetMinspectra(), CMSSearchSettings_Base::IsSetMissedcleave(), CMSSearchSettings_Base::IsSetMsmsppm(), CMSSearchSettings_Base::IsSetMsmstol(), CMSSearchSettings_Base::IsSetNmethionine(), CMSSearchSettings_Base::IsSetNocorrelationscore(), CMSSearchSettings_Base::IsSetNoprolineions(), CMSSearchSettings_Base::IsSetNumisotopes(), CMSSearchSettings_Base::IsSetOthersettings(), CMSSearchSettings_Base::IsSetOutfiles(), CMSSearchSettings_Base::IsSetPepppm(), CMSSearchSettings_Base::IsSetPeptol(), CMSSearchSettings_Base::IsSetPrecursorcull(), CMSSearchSettings_Base::IsSetPrecursorsearchtype(), CMSSearchSettings_Base::IsSetProbfollowingion(), CMSSearchSettings_Base::IsSetProductsearchtype(), CMSSearchSettings_Base::IsSetPseudocount(), CMSSearchSettings_Base::IsSetReportedhitcount(), CMSSearchSettings_Base::IsSetReversesearch(), CMSSearchSettings_Base::IsSetScale(), CMSSearchSettings_Base::IsSetSearchb1(), CMSSearchSettings_Base::IsSetSearchctermproduct(), CMSSearchSettings_Base::IsSetSettingid(), CMSSearchSettings_Base::IsSetSinglenum(), CMSSearchSettings_Base::IsSetSinglewin(), CMSSearchSettings_Base::IsSetTaxids(), CMSSearchSettings_Base::IsSetTophitnum(), CMSSearchSettings_Base::IsSetVariable(), CMSSearchSettings_Base::IsSetZdep(), CMSSearchSettings_Base::ResetAutomassadjust(), CMSSearchSettings_Base::ResetCuthi(), CMSSearchSettings_Base::ResetCutinc(), CMSSearchSettings_Base::ResetCutlo(), CMSSearchSettings_Base::ResetCutoff(), CMSSearchSettings_Base::ResetDb(), CMSSearchSettings_Base::ResetDoublenum(), CMSSearchSettings_Base::ResetDoublewin(), CMSSearchSettings_Base::ResetEnzyme(), CMSSearchSettings_Base::ResetExactmass(), CMSSearchSettings_Base::ResetFixed(), CMSSearchSettings_Base::ResetHitlistlen(), CMSSearchSettings_Base::ResetInfiles(), CMSSearchSettings_Base::ResetIonstosearch(), CMSSearchSettings_Base::ResetLomasscutoff(), CMSSearchSettings_Base::ResetMaxmods(), CMSSearchSettings_Base::ResetMaxnoenzyme(), CMSSearchSettings_Base::ResetMaxproductions(), CMSSearchSettings_Base::ResetMinhit(), CMSSearchSettings_Base::ResetMinnoenzyme(), CMSSearchSettings_Base::ResetMinspectra(), CMSSearchSettings_Base::ResetMissedcleave(), CMSSearchSettings_Base::ResetMsmsppm(), CMSSearchSettings_Base::ResetMsmstol(), CMSSearchSettings_Base::ResetNmethionine(), CMSSearchSettings_Base::ResetNocorrelationscore(), CMSSearchSettings_Base::ResetNoprolineions(), CMSSearchSettings_Base::ResetNumisotopes(), CMSSearchSettings_Base::ResetOthersettings(), CMSSearchSettings_Base::ResetOutfiles(), CMSSearchSettings_Base::ResetPepppm(), CMSSearchSettings_Base::ResetPeptol(), CMSSearchSettings_Base::ResetPrecursorcull(), CMSSearchSettings_Base::ResetPrecursorsearchtype(), CMSSearchSettings_Base::ResetProbfollowingion(), CMSSearchSettings_Base::ResetProductsearchtype(), CMSSearchSettings_Base::ResetPseudocount(), CMSSearchSettings_Base::ResetReportedhitcount(), CMSSearchSettings_Base::ResetReversesearch(), CMSSearchSettings_Base::ResetScale(), CMSSearchSettings_Base::ResetSearchb1(), CMSSearchSettings_Base::ResetSearchctermproduct(), CMSSearchSettings_Base::ResetSettingid(), CMSSearchSettings_Base::ResetSinglenum(), CMSSearchSettings_Base::ResetSinglewin(), CMSSearchSettings_Base::ResetTaxids(), CMSSearchSettings_Base::ResetTophitnum(), CMSSearchSettings_Base::ResetVariable(), CMSSearchSettings_Base::ResetZdep(), CMSSearchSettings_Base::SetAutomassadjust(), CMSSearchSettings_Base::SetCuthi(), CMSSearchSettings_Base::SetCutinc(), CMSSearchSettings_Base::SetCutlo(), CMSSearchSettings_Base::SetCutoff(), CMSSearchSettings_Base::SetDb(), CMSSearchSettings_Base::SetDoublenum(), CMSSearchSettings_Base::SetDoublewin(), CMSSearchSettings_Base::SetEnzyme(), CMSSearchSettings_Base::SetExactmass(), CMSSearchSettings_Base::SetFixed(), CMSSearchSettings_Base::SetHitlistlen(), CMSSearchSettings_Base::SetInfiles(), CMSSearchSettings_Base::SetIonstosearch(), CMSSearchSettings_Base::SetLomasscutoff(), CMSSearchSettings_Base::SetMaxmods(), CMSSearchSettings_Base::SetMaxnoenzyme(), CMSSearchSettings_Base::SetMaxproductions(), CMSSearchSettings_Base::SetMinhit(), CMSSearchSettings_Base::SetMinnoenzyme(), CMSSearchSettings_Base::SetMinspectra(), CMSSearchSettings_Base::SetMissedcleave(), CMSSearchSettings_Base::SetMsmsppm(), CMSSearchSettings_Base::SetMsmstol(), CMSSearchSettings_Base::SetNmethionine(), CMSSearchSettings_Base::SetNocorrelationscore(), CMSSearchSettings_Base::SetNoprolineions(), CMSSearchSettings_Base::SetNumisotopes(), CMSSearchSettings_Base::SetOthersettings(), CMSSearchSettings_Base::SetOutfiles(), CMSSearchSettings_Base::SetPepppm(), CMSSearchSettings_Base::SetPeptol(), CMSSearchSettings_Base::SetPrecursorcull(), CMSSearchSettings_Base::SetPrecursorsearchtype(), CMSSearchSettings_Base::SetProbfollowingion(), CMSSearchSettings_Base::SetProductsearchtype(), CMSSearchSettings_Base::SetPseudocount(), CMSSearchSettings_Base::SetReportedhitcount(), CMSSearchSettings_Base::SetReversesearch(), CMSSearchSettings_Base::SetScale(), CMSSearchSettings_Base::SetSearchb1(), CMSSearchSettings_Base::SetSearchctermproduct(), CMSSearchSettings_Base::SetSettingid(), CMSSearchSettings_Base::SetSinglenum(), CMSSearchSettings_Base::SetSinglewin(), CMSSearchSettings_Base::SetTaxids(), CMSSearchSettings_Base::SetTophitnum(), CMSSearchSettings_Base::SetVariable(), and CMSSearchSettings_Base::SetZdep().

m_Settingid [1/2]

int CMSHitSet_Base::m_Settingid

private

Definition at line 383 of file MSHitSet_.hpp.

Referenced by CMSHitSet_Base::GetSettingid(), CMSHitSet_Base::ResetSettingid(), and CMSHitSet_Base::SetSettingid().

m_Settingid [2/2]

int CMSSearchSettings_Base::m_Settingid

private

Definition at line 2268 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetSettingid(), CMSSearchSettings_Base::ResetSettingid(), and CMSSearchSettings_Base::SetSettingid().

m_Settings

CRef< TSettings > CMSRequest_Base::m_Settings

private

Definition at line 316 of file MSRequest_.hpp.

Referenced by CMSRequest_Base::GetSettings(), CMSRequest_Base::IsSetSettings(), CMSRequest_Base::ResetSettings(), and CMSRequest_Base::SetSettings().

m_Singlenum

int CMSSearchSettings_Base::m_Singlenum

private

Definition at line 2245 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetSinglenum(), CMSSearchSettings_Base::ResetSinglenum(), and CMSSearchSettings_Base::SetSinglenum().

m_Singlewin

int CMSSearchSettings_Base::m_Singlewin

private

Definition at line 2243 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetSinglewin(), CMSSearchSettings_Base::ResetSinglewin(), and CMSSearchSettings_Base::SetSinglewin().

m_Site

int CMSModHit_Base::m_Site

private

Definition at line 187 of file MSModHit_.hpp.

Referenced by CMSModHit_Base::GetSite(), CMSModHit_Base::ResetSite(), and CMSModHit_Base::SetSite().

m_Spectra

CRef< TSpectra > CMSRequest_Base::m_Spectra

private

Definition at line 315 of file MSRequest_.hpp.

Referenced by CMSRequest_Base::GetSpectra(), CMSRequest_Base::IsSetSpectra(), CMSRequest_Base::ResetSpectra(), and CMSRequest_Base::SetSpectra().

m_Start

int CMSPepHit_Base::m_Start

private

Definition at line 512 of file MSPepHit_.hpp.

Referenced by CMSPepHit_Base::GetStart(), CMSPepHit_Base::ResetStart(), and CMSPepHit_Base::SetStart().

m_Stop

int CMSPepHit_Base::m_Stop

private

Definition at line 513 of file MSPepHit_.hpp.

Referenced by CMSPepHit_Base::GetStop(), CMSPepHit_Base::ResetStop(), and CMSPepHit_Base::SetStop().

m_Subsetthresh

double CMSIterativeSettings_Base::m_Subsetthresh

private

Definition at line 224 of file MSIterativeSettings_.hpp.

Referenced by CMSIterativeSettings_Base::GetSubsetthresh(), CMSIterativeSettings_Base::ResetSubsetthresh(), and CMSIterativeSettings_Base::SetSubsetthresh().

m_Suspect

bool CMSIonAnnot_Base::m_Suspect

private

Definition at line 223 of file MSIonAnnot_.hpp.

Referenced by CMSIonAnnot_Base::GetSuspect(), CMSIonAnnot_Base::ResetSuspect(), and CMSIonAnnot_Base::SetSuspect().

m_Taxids

list< int > CMSSearchSettings_Base::m_Taxids

private

Definition at line 2258 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetTaxids(), CMSSearchSettings_Base::ResetTaxids(), and CMSSearchSettings_Base::SetTaxids().

m_Theomass

int CMSHits_Base::m_Theomass

private

Definition at line 706 of file MSHits_.hpp.

Referenced by CMSHits_Base::GetTheomass(), CMSHits_Base::ResetTheomass(), and CMSHits_Base::SetTheomass().

m_Tophitnum

int CMSSearchSettings_Base::m_Tophitnum

private

Definition at line 2253 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetTophitnum(), CMSSearchSettings_Base::ResetTophitnum(), and CMSSearchSettings_Base::SetTophitnum().

m_Type

int CMSModSpec_Base::m_Type

private

Definition at line 511 of file MSModSpec_.hpp.

Referenced by CMSModSpec_Base::GetType(), CMSModSpec_Base::ResetType(), and CMSModSpec_Base::SetType().

m_Unimod

int CMSModSpec_Base::m_Unimod

private

Definition at line 518 of file MSModSpec_.hpp.

Referenced by CMSModSpec_Base::GetUnimod(), CMSModSpec_Base::ResetUnimod(), and CMSModSpec_Base::SetUnimod().

m_Useomssascore

bool CMSLibrarySettings_Base::m_Useomssascore

private

Definition at line 304 of file MSLibrarySettings_.hpp.

Referenced by CMSLibrarySettings_Base::GetUseomssascore(), CMSLibrarySettings_Base::ResetUseomssascore(), and CMSLibrarySettings_Base::SetUseomssascore().

m_Userannotation

int CMSHitSet_Base::m_Userannotation

private

Definition at line 384 of file MSHitSet_.hpp.

Referenced by CMSHitSet_Base::GetUserannotation(), CMSHitSet_Base::ResetUserannotation(), and CMSHitSet_Base::SetUserannotation().

m_Usereplicatescore

bool CMSLibrarySettings_Base::m_Usereplicatescore

private

Definition at line 305 of file MSLibrarySettings_.hpp.

Referenced by CMSLibrarySettings_Base::GetUsereplicatescore(), CMSLibrarySettings_Base::ResetUsereplicatescore(), and CMSLibrarySettings_Base::SetUsereplicatescore().

m_Usermods

CRef< TUsermods > CMSSearchSettings_Base::m_Usermods

private

Definition at line 2260 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetUsermods(), CMSSearchSettings_Base::IsSetUsermods(), CMSSearchSettings_Base::ResetUsermods(), and CMSSearchSettings_Base::SetUsermods().

m_Value [1/2]

double CMSScoreSet_Base::m_Value

private

Definition at line 187 of file MSScoreSet_.hpp.

Referenced by CMSScoreSet_Base::GetValue(), CMSScoreSet_Base::ResetValue(), and CMSScoreSet_Base::SetValue().

m_Value [2/2]

string CNameValue_Base::m_Value

private

Definition at line 188 of file NameValue_.hpp.

Referenced by CNameValue_Base::GetValue(), CNameValue_Base::ResetValue(), and CNameValue_Base::SetValue().

m_Variable

list< int > CMSSearchSettings_Base::m_Variable

private

Definition at line 2248 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetVariable(), CMSSearchSettings_Base::ResetVariable(), and CMSSearchSettings_Base::SetVariable().

m_Version

string CMSResponse_Base::m_Version

private

Definition at line 438 of file MSResponse_.hpp.

Referenced by CMSResponse_Base::GetVersion(), CMSResponse_Base::ResetVersion(), and CMSResponse_Base::SetVersion().

m_Zdep

int CMSSearchSettings_Base::m_Zdep

private

Definition at line 2238 of file MSSearchSettings_.hpp.

Referenced by CMSSearchSettings_Base::GetZdep(), CMSSearchSettings_Base::ResetZdep(), and CMSSearchSettings_Base::SetZdep().