hit.cpp File Reference

Implementation of CHit class. More...

#include <ncbi_pch.hpp>
#include <algo/cobalt/hit.hpp>
#include <algorithm>

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Classes
struct	compare_hit_seq1_start
	callback used for sorting HSP lists More...

Functions
	USING_SCOPE (objects)
static void	x_RemoveEnvelopedSubHits (CHit::TSubHit &subhits)
	Delete any hits from a list that are contained within higher-scoring hits. More...

Detailed Description

Implementation of CHit class.

Definition in file hit.cpp.

Function Documentation

USING_SCOPE()

USING_SCOPE

(

objects

)

References _ASSERT, and i.

x_RemoveEnvelopedSubHits()

static void x_RemoveEnvelopedSubHits ( CHit::TSubHit &  subhits )

static

Delete any hits from a list that are contained within higher-scoring hits.

Only overlap on sequence 1 is considered. In practice, the hits refer to block alignments derived from RPS blast results, and sequence 2 is an RPS database sequence. It is sequence 1 that matters for later processing

Parameters

subhits

The list of hits to process [in/modified]

Definition at line 222 of file hit.cpp.

References CLocalRange< Position >::Contains(), i, CHit::m_Score, CHit::m_SeqRange1, ct::sort(), and CLocalRange< Position >::StrictlyBelow().

Referenced by CHit::ResolveSubHitConflicts().