#include <corelib/ncbistd.hpp>#include <corelib/ncbimisc.hpp>#include <util/range_coll.hpp>#include <objmgr/annot_selector.hpp>#include <objmgr/mapped_feat.hpp>#include <gui/gui.hpp>#include <objects/seq/Bioseq.hpp>#include <objmgr/scope.hpp>#include <objmgr/seq_entry_handle.hpp>#include <objmgr/bioseq_handle.hpp>#include <gui/objutils/objects.hpp>#include <gui/objutils/registry.hpp>#include <connect/ncbi_http_connector.h>#include <objtools/readers/iidmapper.hpp>#include <algo/id_mapper/id_mapper.hpp>#include <limits>
Include dependency graph for utils.hpp:
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Classes | |
| class | CLinkedFeature |
| class | ISeqTaskProgressCallback |
| Task clients implement this callback interface. More... | |
| class | CSeqUtils |
| class | CGencollIdMapperAdapter |
| Adapter class to convert CGencollIdMapper to IIdMapper interface. More... | |
Macros | |
| #define | __GUI_SEQ_UTILS_DEFINED__ |
Functions | |
| CConstRef< objects::CBioseq > | GetBioseqForSeqdesc (CRef< objects::CScope > scope, const objects::CSeqdesc &seq_desc) |
| objects::CBioseq_Handle | GetBioseqForSeqFeat (const objects::CSeq_feat &f, objects::CScope &scope) |
| objects::CSeq_feat_Handle | GetSeqFeatHandleForBadLocFeature (const objects::CSeq_feat &feat, objects::CScope &scope) |
| objects::CSeq_entry_Handle | GetSeqEntryForPubdesc (CRef< objects::CScope > scope, const objects::CPubdesc &pubdesc) |
| objects::CSeq_entry_Handle | GetTopSeqEntryFromScopedObject (SConstScopedObject &obj) |
| vector< const objects::CFeatListItem * > | GetSortedFeatList (objects::CSeq_entry_Handle seh, size_t max=numeric_limits< size_t >::max()) |
Variables | |
| static const string | kCoverageStr = "coverage" |
