NCBI C++ ToolKit
Classes | Macros | Functions | Variables
utils.hpp File Reference
#include <corelib/ncbistd.hpp>
#include <corelib/ncbimisc.hpp>
#include <util/range_coll.hpp>
#include <objmgr/annot_selector.hpp>
#include <objmgr/mapped_feat.hpp>
#include <gui/gui.hpp>
#include <objects/seq/Bioseq.hpp>
#include <objmgr/scope.hpp>
#include <objmgr/seq_entry_handle.hpp>
#include <objmgr/bioseq_handle.hpp>
#include <gui/objutils/objects.hpp>
#include <gui/objutils/registry.hpp>
#include <connect/ncbi_http_connector.h>
#include <objtools/readers/iidmapper.hpp>
#include <algo/id_mapper/id_mapper.hpp>
#include <limits>
+ Include dependency graph for utils.hpp:

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Classes

class  CLinkedFeature
 
class  ISeqTaskProgressCallback
 Task clients implement this callback interface. More...
 
class  CSeqUtils
 
class  CGencollIdMapperAdapter
 Adapter class to convert CGencollIdMapper to IIdMapper interface. More...
 

Macros

#define __GUI_SEQ_UTILS_DEFINED__
 

Functions

CConstRef< objects::CBioseq > GetBioseqForSeqdesc (CRef< objects::CScope > scope, const objects::CSeqdesc &seq_desc)
 
objects::CBioseq_Handle GetBioseqForSeqFeat (const objects::CSeq_feat &f, objects::CScope &scope)
 
objects::CSeq_feat_Handle GetSeqFeatHandleForBadLocFeature (const objects::CSeq_feat &feat, objects::CScope &scope)
 
objects::CSeq_entry_Handle GetSeqEntryForPubdesc (CRef< objects::CScope > scope, const objects::CPubdesc &pubdesc)
 
objects::CSeq_entry_Handle GetTopSeqEntryFromScopedObject (SConstScopedObject &obj)
 
vector< const objects::CFeatListItem * > GetSortedFeatList (objects::CSeq_entry_Handle seh, size_t max=numeric_limits< size_t >::max())
 

Variables

static const string kCoverageStr = "coverage"
 
Modified on Sat May 18 11:42:17 2024 by modify_doxy.py rev. 669887