#include <ncbi_pch.hpp>#include <corelib/ncbistr.hpp>#include <objects/seqloc/Seq_id.hpp>#include "insdc_utils.hpp"#include "pubseq_gateway_utils.hpp"
Include dependency graph for insdc_utils.cpp:
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Functions | |
| USING_SCOPE (objects) | |
| bool | IsINSDCSeqIdType (CBioseqInfoRecord::TSeqIdType seq_id_type) |
| string | GetBioseqRecordId (const CBioseqInfoRecord &record) |
| SINSDCDecision | DecideINSDC (const vector< CBioseqInfoRecord > &records, CBioseqInfoRecord::TVersion version) |
Variables | |
| USING_NCBI_SCOPE | |
Function Documentation
◆ DecideINSDC()
| SINSDCDecision DecideINSDC | ( | const vector< CBioseqInfoRecord > & | records, |
| CBioseqInfoRecord::TVersion | version | ||
| ) |
Definition at line 81 of file insdc_utils.cpp.
References CRequestStatus::e200_Ok, CRequestStatus::e404_NotFound, CRequestStatus::e500_InternalServerError, GetBioseqRecordId(), IsINSDCSeqIdType(), and dtl::version.
Referenced by CPSGCache::x_LookupINSDCBioseqInfo(), CPSGS_AsyncBioseqInfoBase::x_OnBioseqInfoWithoutSeqIdType(), and CPSGS_AsyncResolveBase::x_OnBioseqInfoWithoutSeqIdType().
◆ GetBioseqRecordId()
| string GetBioseqRecordId | ( | const CBioseqInfoRecord & | record | ) |
Definition at line 57 of file insdc_utils.cpp.
References buf, CBioseqInfoRecord::GetAccession(), CBioseqInfoRecord::GetGI(), CBioseqInfoRecord::GetSeqIdType(), CBioseqInfoRecord::GetVersion(), len, and PSGToString().
Referenced by DecideINSDC().
◆ IsINSDCSeqIdType()
| bool IsINSDCSeqIdType | ( | CBioseqInfoRecord::TSeqIdType | seq_id_type | ) |
Definition at line 44 of file insdc_utils.cpp.
References CSeq_id_Base::e_Ddbj, CSeq_id_Base::e_Embl, CSeq_id_Base::e_Genbank, CSeq_id_Base::e_Tpd, CSeq_id_Base::e_Tpe, and CSeq_id_Base::e_Tpg.
Referenced by AreSeqIdTypesMatched(), DecideINSDC(), IPSGS_Processor::GetEffectiveSeqIdType(), IPSGS_Processor::ParseInputSeqId(), CPSGCache::x_LookupBioseqInfo(), CPSGS_AsyncBioseqInfoBase::x_OnBioseqInfo(), and CPSGS_AsyncResolveBase::x_OnBioseqInfo().
◆ USING_SCOPE()
| USING_SCOPE | ( | objects | ) |
Variable Documentation
◆ USING_NCBI_SCOPE
| USING_NCBI_SCOPE |
Definition at line 39 of file insdc_utils.cpp.
