NCBI C++ ToolKit
Variables
introspection_html.hpp File Reference
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Variables

<!DOCTYPE HTML >< html > n< header > n< title > PubSeq Gateway Help Page</title > n< style > n table
 
<!DOCTYPE HTML >< html > n< header > n< title > PubSeq Gateway Help Page</title > n< style > n th
 
<!DOCTYPE HTML >< html > n< header > n< title > PubSeq Gateway Help Page</title > n< style > n td
 
n padding
 
n font size
 
n font weight
 
n background color
 
n n n</style > n</header > n< body > n< h1 > PubSeq Gateway</h1 > n< p > Accession resolution and retrieval of bio sequences Retrieval of named annotations</p > n< table > n< tr > n< td > version</td > n< td ></td > n</tr > n< tr > n< td > build date</td > n< tdJan
 
sat & gt
 
lt
 
The blob sat and sat key Both must be positive integers</td > n< td > Non empty string The interpretation of the blob id depends on a processor Cassandra n processor expects the following format
 
where boath are integers</td > n< td ></td > n</tr > n< tr > n< td > tse</td > n< td > optional</td > n< td > String</td > n< td class=\"description\"> TSE option controls what blob is provided
 
where boath are integers</td > n< td ></td > n</tr > n< tr > n< td > tse</td > n< td > optional</td > n< td > String</td > n< td class=\"description\"> TSE option controls what blob is whole
 
where boath are integers</td > n< td ></td > n</tr > n< tr > n< td > tse</td > n< td > optional</td > n< td > String</td > n< td class=\"description\"> TSE option controls what blob is orig
 
where boath are integers</td > n< td ></td > n</tr > n< tr > n< td > tse</td > n< td > optional</td > n< td > String</td > n< td class=\"description\"> TSE option controls what blob is smart and slim</td> n<td> orig</td> n</tr> n<tr> n<td> last_modified</td> n<td> optional</td> n<td> Integer</td> n<td class=\"description\"> The blob last modification If provided then the exact match will be requested with n the Cassandra storage corresponding field value</td> n<td> Positive integer Not provided means that the most recent match will be selected</td> n<td></td> n</tr> n<tr> n<td> use_cache</td> n<td> optional</td> n<td> String</td> n<td class=\"description\"> The option controls if the Cassandra LMDB cache and or database should be used It n affects the seq id resolution step and the blob properties lookup step The following n options are available
 
where boath are integers</td > n< td ></td > n</tr > n< tr > n< td > tse</td > n< td > optional</td > n< td > String</td > n< td class=\"description\"> TSE option controls what blob is smart and slim</td> n<td> orig</td> n</tr> n<tr> n<td> last_modified</td> n<td> optional</td> n<td> Integer</td> n<td class=\"description\"> The blob last modification If provided then the exact match will be requested with n the Cassandra storage corresponding field value</td> n<td> Positive integer Not provided means that the most recent match will be selected</td> n<td></td> n</tr> n<tr> n<td> use_cache</td> n<td> optional</td> n<td> String</td> n<td class=\"description\"> The option controls if the Cassandra LMDB cache and or database should be used It n affects the seq id resolution step and the blob properties lookup step The following n options are BIOSEQ_INFO and BLOB_PROP at all
 
use only n Cassandra database for the lookups</td > n</tr > n< tr > n< td > yes</td > n< td > do not use tables SI2CSI
 
use only n Cassandra database for the lookups</td > n</tr > n< tr > n< td > yes</td > n< td > do not use tables BIOSEQ_INFO and BLOB_PROP in the Cassandra database
 
use n only the LMDB cache</td > n</tr > n< tr > n< td ></td > n< td > use the LMDB cache if at all possible
 
 then
 
fallback to Cassandra storage</td > n</tr > n</table > n</td > n< tdyes
 
fallback to Cassandra storage</td > n</tr > n</table > n</td > n< td > no and not provided</td > n< td ></td > n</tr > n< tr > n< td > tse</td > n< td > optional</td > n< td > String</td > n< td class=\"description\"> TSE option controls what blob is smart and slim</td> n<td> orig</td> n</tr> n<tr> n<td> exclude_blobs</td> n<td> optional</td> n<td> String</td> n<td class=\"description\"> A comma separated list of blob identifiers which client already has If provided then n if the resolution of sequence identifier sequence identifier type matches one of the n blob identifiers in the list then the blob will not be sent The format of the blob n identifier depends on a processor For example
 
where both of them are integers Note
 

Variable Documentation

◆ all

fallback to Cassandra storage</td > n</tr > n</table > n</td > n< td > no and not provided</td > n< td ></td > n</tr > n< tr > n< td > include_hup</td > n< td > optional</td > n< td > String</td > n< td class=\"description\"> Explicitly tells the server if it should try to retrieve data from HUP keyspaces n If data are coming from a secure keyspace then the following logic is used If the n include_hup option is provided then the decision is made basing on the provided value n Otherwise a decision is made basing on the presence of the WebCubbyUser cookie If n it was decided that HUP data needs to be provided then the server uses the WebCubbyUser n cookie value to perform an authorization check</td> n<td> yes and no</td> n<td></td> n</tr> n<tr> n<td> client_id</td> n<td> optional</td> n<td> String</td> n<td class=\"description\"> The client identifier If provided then the exclude blob feature takes place</td> n<td> A string identifier</td> n<td></td> n</tr> n<tr> n<td> send_blob_if_small</td> n<td> optional</td> n<td> Integer</td> n<td class=\"description\"></td> n<td> An integer greater or equal</td> n<td></td> n</tr> n<tr> n<td> trace</td> n<td> optional</td> n<td> String</td> n<td class=\"description\"> The option to include trace messages to the server output</td> n<td> yes and no</td> n<td> no</td> n</tr> n<tr> n<td> hops</td> n<td> optional</td> n<td> Integer</td> n<td class=\"description\"> A numbers of hops before the request reached the server</td> n<td> An integer greater or equal</td> n<td></td> n</tr> n<tr> n<td> enable_processor</td> n<td> optional</td> n<td> String</td> n<td class=\"description\"> A name of a processor which is allowed to process a request The parameter can be n repeated as many times as needed</td> n<td> A string</td> n<td></td> n</tr> n<tr> n<td> disable_processor</td> n<td> optional</td> n<td> String</td> n<td class=\"description\"> A name of a processor which is disallowed to process a request The parameter can n be repeated as many times as needed</td> n<td> A string</td> n<td></td> n</tr> n<tr> n<td> processor_events</td> n<td> optional</td> n<td> String</td> n<td class=\"description\"> Switch on off additional reply chunks which tell about the processor</td> n<td> yes and no</td> n<td> no</td> n</tr> n</table> n<h3> Reply</h3> n<p> The PSG protocol is used in the HTTP body The blob properties and chunks are provided</p> n<hr><br><br><a id=\"ID_get\"></a><h2> ID get</h2> n<p> Retrieves blob chunks basing on the seq_id and seq_id_type</p> n<table class=\"first-column\"> n<tr> n<th> Parameter</th> n<th> Optional</th> n<th> Type</th> n<th> Description</th> n<th> Allowed Values</th> n<th> Default</th> n</tr> n<tr> n<td> seq_id</td> n<td> mandatory</td> n<td> String</td> n<td class=\"description\"> Sequence identifier</td> n<td> A string identifier</td> n<td></td> n</tr> n<tr> n<td> seq_id_type</td> n<td> optional</td> n<td> Integer</td> n<td class=\"description\"> Sequence identifier type</td> n<td> Integer type greater than</td> n<td></td> n</tr> n<tr> n<td> use_cache</td> n<td> optional</td> n<td> String</td> n<td class=\"description\"> The option controls if the Cassandra LMDB cache and or database should be used It n affects the seq id resolution step and the blob properties lookup step The following n options are BIOSEQ_INFO and BLOB_PROP at all

◆ available

fallback to Cassandra storage</td > n</tr > n</table > n</td > n< td > no and not provided</td > n< td ></td > n</tr > n< tr > n< td > include_hup</td > n< td > optional</td > n< td > String</td > n< td class=\"description\"> Explicitly tells the server if it should try to retrieve data from HUP keyspaces n If data are coming from a secure keyspace then the following logic is used If the n include_hup option is provided then the decision is made basing on the provided value n Otherwise a decision is made basing on the presence of the WebCubbyUser cookie If n it was decided that HUP data needs to be provided then the server uses the WebCubbyUser n cookie value to perform an authorization check</td> n<td> yes and no</td> n<td></td> n</tr> n<tr> n<td> client_id</td> n<td> optional</td> n<td> String</td> n<td class=\"description\"> The client identifier If provided then the exclude blob feature takes place</td> n<td> A string identifier</td> n<td></td> n</tr> n<tr> n<td> send_blob_if_small</td> n<td> optional</td> n<td> Integer</td> n<td class=\"description\"></td> n<td> An integer greater or equal</td> n<td></td> n</tr> n<tr> n<td> trace</td> n<td> optional</td> n<td> String</td> n<td class=\"description\"> The option to include trace messages to the server output</td> n<td> yes and no</td> n<td> no</td> n</tr> n<tr> n<td> hops</td> n<td> optional</td> n<td> Integer</td> n<td class=\"description\"> A numbers of hops before the request reached the server</td> n<td> An integer greater or equal</td> n<td></td> n</tr> n<tr> n<td> enable_processor</td> n<td> optional</td> n<td> String</td> n<td class=\"description\"> A name of a processor which is allowed to process a request The parameter can be n repeated as many times as needed</td> n<td> A string</td> n<td></td> n</tr> n<tr> n<td> disable_processor</td> n<td> optional</td> n<td> String</td> n<td class=\"description\"> A name of a processor which is disallowed to process a request The parameter can n be repeated as many times as needed</td> n<td> A string</td> n<td></td> n</tr> n<tr> n<td> processor_events</td> n<td> optional</td> n<td> String</td> n<td class=\"description\"> Switch on off additional reply chunks which tell about the processor</td> n<td> yes and no</td> n<td> no</td> n</tr> n</table> n<h3> Reply</h3> n<p> The PSG protocol is used in the HTTP body The blob properties and chunks are provided</p> n<hr><br><br><a id=\"ID_get\"></a><h2> ID get</h2> n<p> Retrieves blob chunks basing on the seq_id and seq_id_type</p> n<table class=\"first-column\"> n<tr> n<th> Parameter</th> n<th> Optional</th> n<th> Type</th> n<th> Description</th> n<th> Allowed Values</th> n<th> Default</th> n</tr> n<tr> n<td> seq_id</td> n<td> mandatory</td> n<td> String</td> n<td class=\"description\"> Sequence identifier</td> n<td> A string identifier</td> n<td></td> n</tr> n<tr> n<td> seq_id_type</td> n<td> optional</td> n<td> Integer</td> n<td class=\"description\"> Sequence identifier type</td> n<td> Integer type greater than</td> n<td></td> n</tr> n<tr> n<td> use_cache</td> n<td> optional</td> n<td> String</td> n<td class=\"description\"> The option controls if the Cassandra LMDB cache and or database should be used It n affects the seq id resolution step and the blob properties lookup step The following n options are available

◆ color

n background color

Definition at line 20 of file introspection_html.hpp.

Referenced by CSeqGraphicPane::AddPointMarker(), CSeqGraphicPane::AddRangeMarker(), OpenGLRenderer::AddTransparentSphere(), CGlRenderDebug::BeginText(), CRenderCommon::BeginText(), CGlRenderPdf::BeginText(), CSVGRenderer::BeginText(), BOOST_AUTO_TEST_CASE(), NSnpGui::ClinSigAsColor(), CPhyloTreeDataSource::Clusterize(), CPsgPerfApplication::ColorMe(), CColorPanel::ContrastBG(), CColorPanel::ContrastFG(), CRgbaColor::CRgbaColor(), CGlFeedbackFont::DecodeText(), CRenderingContext::Draw3DFletch(), CRenderingContext::Draw3DQuad(), CRenderingContext::Draw3DQuad_HorzLines(), CRenderingContext::Draw3DTriangle(), SequenceViewerWidget_SequenceArea::DrawCell(), CRenderingContext::DrawDisk(), CRenderingContext::DrawDisk2(), CRenderingContext::DrawHairLine(), CRenderingContext::DrawHighlight(), OpenGLRenderer::DrawLabel(), CRenderingContext::DrawSquare(), CRenderingContext::DrawStrandIndicators(), CRenderingContext::DrawUnalignedTail(), CGlUtils::DumpState(), DumpText(), CGlFeedbackFont::EncodeText(), StyleManager::GetAtomStyle(), COrfSearchTableModel::GetBackgroundColor(), CThreeFeatRecord::GetBedFeature(), BlockMultipleAlignment::GetCharacterTraitsAt(), DisplayRowFromAlignment::GetCharacterTraitsAt(), DisplayRowFromSequence::GetCharacterTraitsAt(), DisplayRowFromString::GetCharacterTraitsAt(), SequenceDisplay::GetCharacterTraitsAt(), CSGConfigUtils::GetColor(), GetColor(), CSeqTextConfig::GetColor(), CFeatGlyph::GetCustomColor(), CVcfGlyph::GetCustomColor(), CGraphTrack::GetLegend(), CHistogramGlyph::GetLegend(), CProjectView::GetReflectionInfo(), SequenceDisplay::GetRowTitle(), CSNPColorPicker::GetSNPColor(), CWriteUtil::GetThreeFeatRgb(), glColorC(), CRgbaColor::Invert(), Colors::IsLightColor(), CHistParamsManager::LoadSettings(), CSeqGraphicConfig::LoadSettingStyles(), CSeqGraphicPane::ModifyMarker(), SequenceDisplay::MouseOver(), NcbiChooseColor(), CwxTableListCtrl::OnGetItemAttr(), CwxPhyloEditDlg::OnListctrl1Selected(), CGradientColorPanel::OnPaint(), CGradientPanel::OnPaint(), SequenceViewerWidget_TitleArea::OnPaint(), CWindowManager::OnSetClientColor(), CSeqGraphicWidget::OnSetSeqMarkerDlg(), CSeqGraphicWidget::OnSetSeqMarkerForSelDlg(), CGradientColorPanel::OnSwapClick(), CPhyTreeLabelTracker::operator()(), CPhyloSelectionSetMgr::PickBestColor(), CHistogramGraph::Render(), RenderRect(), s_GetBlastNameColor(), s_TestNode(), s_UpdateValueColor(), LinearGradient::Serialize(), CAlnMultiPane::SetBackColor(), CAlnMultiRenderer::SetBackColor(), CNamedGroup::SetBackgroundColor(), CHitMatrixRenderer::SetBackgroundColor(), CSeqGraphicConfig::SetBGCommentColor(), CSeqGraphicConfig::SetBkColor(), SetButtonColor(), CColorTableMethod::SetColor(), CProjectViewBase::SetColor(), CwxGLTestView::SetColor(), CRegularGridRenderer::SetColor(), CSeqMarkHandler::SetColor(), CClockPanelWMClient::SetColor(), CMarker::SetColor(), CSGConfigUtils::SetColor(), CWidgetDisplayStyle::SetColor(), CLinearSelHandler::SetColor(), CRuler::SetColor(), CTextSelHandler::SetColor(), CCustomFeatureColor::SetColor(), CSeqTextConfig::SetColor(), CSNPScoringMethod::SetColorForNoScore(), CMatrixScoringMethod::SetColorForNoScore(), CTestSeqBasedMethod::SetColorForNoScore(), CColorTableMethod::SetColorForNoScore(), CTranslationConfig::SetCommentColor(), CSeqGraphicConfig::SetFGCommentColor(), CDesktopItem::SetFrameColor(), CHitMatrixRenderer::SetGraphColor(), CSeqGraphicRenderer::SetHighlightsColor(), CSeqGraphicConfig::SetHorizontalGridColor(), CRegularGridRenderer::SetHorzColor(), CTranslationConfig::SetLabelBgColor(), CwxSeqMarkerSetDlg::SetMarkerColor(), CPhyloNodeData::SetMarkerColors(), CSeqGraphicPane::SetMarkers(), CAlnMultiPane::SetMasterBackColor(), CAlnMultiRenderer::SetMasterBackColor(), CSeqGraphicConfig::SetNonNCBITitleBackground(), CTranslationConfig::SetOrfHighlightColor(), CTranslationConfig::SetOrfSeqColor(), CBedFeatureRecord::SetRgb(), CSeqGraphicConfig::SetSelectionColor(), CPhyloSaveSelectiondlg::SetSelections(), CSeqGraphicConfig::SetSelHairlineDownColor(), CSeqGraphicConfig::SetSelHairlineManyColor(), CSeqGraphicConfig::SetSelHairlineOneColor(), CSeqGraphicConfig::SetSelLabelColor(), CTranslationConfig::SetSeqColor(), CRsitesGlyph::SetSiteColor(), CTranslationConfig::SetStartCodonColor(), CTranslationConfig::SetStopCodonColor(), CTextPanel::SetTextBackground(), CGlRenderDebug::SetTextColor(), CRenderCommon::SetTextColor(), CEditingBtnsPanel::SetTextViewBackgroundColour(), CSeqGraphicConfig::SetTitleBackground(), CNamedGroup::SetTitleColor(), CRegularGridRenderer::SetVertColor(), CSeqGraphicConfig::SetVerticalGridColor(), SequenceViewerWidget_TitleArea::ShowTitles(), CColorPanel::SwapColors(), CColorPickerValidator::TransferFromWindow(), CColorPickerValidator::TransferToWindow(), CUnalignedRegionDlg::WriteRedText(), CGlTextureFont::WriteText(), IPhyloTreeRender::x_AddCollapsedGeomNode(), IPhyloTreeRender::x_AddCollapsedTextureNode(), CSeqGraphicPane::x_AddNewMarker(), COrfSearchJob::x_AddToResults(), COrfSearchJob::x_DoSearch(), CLDBlockGlyph::x_Draw(), CAlignSmearGlyph::x_Draw(), CGeneGroup::x_Draw(), CDockPanel::x_DrawClientElements(), CCrossPanelIR::x_DrawCrossedPanel(), CHistogramGlyph::x_DrawDataPoints(), CAlnStatGlyph::x_DrawDensityTable(), CFeatGlyph::x_DrawFeatureBar(), CLinkedFeatsGroup::x_DrawFeatureBar(), CFeatGlyph::x_DrawFeatureBar_sv(), CFeaturePanel::x_DrawHairLine(), CHistogramGlyph::x_DrawHeatMap(), CSeqGlyph::x_DrawInnerLabelColumns(), CSeqGlyph::x_DrawInnerLabels(), CFeatGlyph::x_DrawRSites(), CSelectionHelper::x_DrawSelectionArea(), CAlignGlyph::x_DrawSimplified(), CVcfGlyph::x_DrawVariationBar(), CTemplateScoringMethod::x_GetColor(), CSVGRenderer::x_GetGradientColors(), CFeatGlyph::x_GetUserColor(), CSVGRenderer::x_LinearGradient(), CSeqGraphicConfig::x_LoadFeatSettings(), CGraphTrack::x_LoadSettings(), CSixFramesTransTrack::x_LoadSettings(), CHistogramGlyph::x_MapValue(), CPhyTreeFormatter::x_MarkNode(), CSeqGraphicPane::x_ModifyMarker(), CSVGRenderer::x_PolygonStippleToPattern(), CAlnVecRow::x_RenderAlign(), CAlnVecRow::x_RenderAlignSegments(), CAlnVecRow::x_RenderAveragableScores(), CAlignGlyph::x_RenderAveragableScores(), CFeaturePanel::x_RenderFeatureGrid(), CHistogramGraph::x_RenderHistogram(), CHitMatrixGraph::x_RenderHits(), IPhyloTreeRender::x_RenderNodeVbo(), CAlnVecRow::x_RenderNonAveragableScores(), CAlignGlyph::x_RenderNonAveragableScores(), CHitMatrixRenderer::x_UpdateGraphColor(), CHistogramGlyph::x_UpdateLegend(), CAlnMultiWidget::x_UpdateOnStylesChanged(), CViewGraphic::x_UpdateVisRangeLayout(), and CBedImportData::xInitializeRgb().

◆ database

use only n Cassandra database for the lookups</td > n</tr > n< tr > n< td > yes</td > n< td > do not use tables BIOSEQ_INFO and BLOB_PROP in the Cassandra database

◆ example

fallback to Cassandra storage</td> n</tr> n</table> n</td> n<td> no and not provided</td> n<td></td> n</tr> n<tr> n<td> tse</td> n<td> optional</td> n<td> String</td> n<td class=\"description\"> TSE option controls what blob is smart and slim</td> n<td> orig</td> n</tr> n<tr> n<td> exclude_blobs</td> n<td> optional</td> n<td> String</td> n<td class=\"description\"> A comma separated list of blob identifiers which client already has If provided then n if the resolution of sequence identifier sequence identifier type matches one of the n blob identifiers in the list then the blob will not be sent The format of the blob n identifier depends on a processor For example

◆ format

The blob sat and sat key Both must be positive integers</td> n<td> Non empty string The interpretation of the blob id depends on a processor Cassandra n processor expects the following format

Definition at line 78 of file introspection_html.hpp.

◆ gt

sat key & gt

◆ Jan

n n n</style> n</header> n<body> n<h1> PubSeq Gateway</h1> n<p> Accession resolution and retrieval of bio sequences Retrieval of named annotations</p> n<table> n<tr> n<td> version</td> n<td></td> n</tr> n<tr> n<td> build date</td> n<td> Jan

◆ lt

& lt

◆ Note

where both of them are integers Note

◆ orig

fallback to Cassandra storage</td > n</tr > n</table > n</td > n< td > no and not provided</td > n< td ></td > n</tr > n< tr > n< td > tse</td > n< td > optional</td > n< td > String</td > n< td class=\"description\"> TSE option controls what blob is orig

Definition at line 118 of file introspection_html.hpp.

Referenced by _cs_locale_copy(), _cs_locale_copy_inplace(), _SQLSetStmtAttr(), CArgDescriptions::AddNegatedFlagAlias(), AddSize(), CConvertSecondProtNameToDesc::apply(), CConvertDescToSecondProtName::apply(), CFixProductNames::apply(), CConvertRptUnitRangeToLoc::apply(), CUpdateReplacedECNumbers::apply(), CGroupExplode::apply(), CRemoveUnnecessaryExceptions::apply(), CConvertSelectedGaps::apply_impl(), CEditSelectedGaps::apply_impl(), BitString(), BlastMemDup(), BOOST_AUTO_TEST_CASE(), BuildGoodEcoSetWithAlign(), CAutoDefModifierCombo::CAutoDefModifierCombo(), CConservationScoringMethod::CConservationScoringMethod(), CDenseg_CI::CDenseg_CI(), CSequenceEditingEventHandler::CDSGeneRangeErrorRestore(), CSequenceEditingEventHandler::CDSGeneRangeErrorSuppress(), CheckOneSpecificHost(), CNonSynonymousScoringMethod::CNonSynonymousScoringMethod(), CConvertFeatureBase::Convert(), CConvertMiscFeatToGene::Convert(), CConvertImpToImp::Convert(), CConvertCDSToRNA::Convert(), CConvertGeneToRNA::Convert(), CConvertBioSrcToRptRegion::Convert(), CConvertCDSToMiscFeat::Convert(), CConvertImpToProt::Convert(), CConvertProtToImp::Convert(), CConvertImpToRNA::Convert(), CConvertImpToCDS::Convert(), CConvertImpToGene::Convert(), CConvertRegionToImp::Convert(), CConvertRegionToRna::Convert(), CConvertCommentToImp::Convert(), CConvertGeneToImp::Convert(), CConvertRnaToImp::Convert(), CConvertmRNAToCDS::Convert(), CConverttRNAToGene::Convert(), CConvertSiteToImp::Convert(), CConvertRegionToProt::Convert(), CConvertRNAToRNA::Convert(), CConvertToBond::Convert(), CConvertToSite::Convert(), CConvertToRegion::Convert(), CConvertCDSToProt::Convert(), CConvertCDSToGene::Convert(), CConvertCDSToPseudoGene::Convert(), ConvertTableColumns(), CopyTableColumns(), CQualityScoringMethod::CQualityScoringMethod(), CQualityScoringMethodAA::CQualityScoringMethodAA(), CSimpleScoringMethod::CSimpleScoringMethod(), CSparse_CI::CSparse_CI(), CSparseIterator::CSparseIterator(), CTaxValidationAndCleanup::DoTaxonomyUpdate(), CEditingBtnsPanel::ECNumberCleanup(), CRemoveXrefs< T >::FindFeatures(), CChainer::FindSelenoproteinsClipProteinsToStartStop(), CPCRPrimerSeq::Fixi(), CSubSource::FixLatLonPrecision(), fta_seqloc_local(), CNewCleanup_imp::GBQualSeqFeatBC(), get_float_precision_factor(), CRemoveGeneXrefs::GetCommand(), CSuppressGenes::GetCommand(), CCrossRefFeatsDlg::GetCommand(), CGeneFeatFromXrefs::GetCommand(), CGeneXrefsFromFeats::GetCommand(), CAnnotMapping_Info::GetMappedSeq_align(), CSeq_id::GetMatchingTextseqIds(), CMsvcSite::GetPlatformInfo(), CNonAsciiReplacementPanel::GetReplacement(), CCrossPanelIR::HitTest(), CWrongIllegalQuals::IllegalQualsToNote(), CCleanup::LocationMayBeExtendedToMatch(), CSearch_func::Match(), CCleanup::MoveFeatToProtein(), Nlm_MemDup(), CSuspectProductRulesEditor::OnApplyFixes(), CwxSeqMarkerSetDlg::OnOkClick(), CDockMarkerWindow::OnPaint(), SSeqIdRange::const_iterator::operator++(), SSeqIdRange::const_iterator::operator--(), CTraceGraphProperties::operator=(), StyleSettings::operator=(), IWMClient::CFingerprint::operator==(), CGb_qual::ParseExperiment(), pcregrep(), CRemoveGeneXrefs::RemoveAll(), CNewCleanup_imp::RemoveBadProteinTitle(), CRemoveGeneXrefs::RemoveNonsuppressing(), CRemoveGeneXrefs::RemoveOrphanLocus(), CRemoveGeneXrefs::RemoveOrphanLocus_tag(), CRemoveGeneXrefs::RemoveUnnecessary(), variation::RepackageAssertedSequence(), variation_ref::RepackageAssertedSequence(), CMacroAdvStringConstraintPanel< T >::ReplaceChoices(), ReverseAlignmentStrand(), CWrongIllegalQuals::RmIllegalQuals(), CWrongIllegalQuals::RmWrongOrIllegalQuals(), CWrongIllegalQuals::RmWrongQuals(), s_AddwxSize(), s_BlastGapAlignStruct_Copy(), s_BlastScoreBlk_Copy(), IAuthorEditor::s_CapitalizeInitial(), s_CloneBlastQueryVector(), s_DoesTextContainOnlyTheseWords(), CMacroFunction_FixPubCaps::s_FixCapitalizationInElement(), s_FixNameCap(), CMacroFunction_AuthorFix::s_InsertInitialPeriods(), CChainer::ScoreCDSes_FilterOutPoorAlignments(), SERV_CopyInfo(), SERV_CopyInfoEx(), SetEnvSampleFixAmplifiedPrimers(), SortGBQuals(), CFeatGapInfo::Split(), CDUpdater::SplitBioseqByBlastDefline(), StyleSettings::StyleSettings(), TestMapper_ExonPartsOrder(), TestMapper_Fuzz(), TestMapper_Trimming(), TestMapper_TruncatedMix(), TestMapping_AlignmentsToParts(), TestMapping_Merging(), TestMapping_Simple(), TestMappingSeq_align(), TestMappingSeq_align_Exception(), TestMappingSeq_graph(), TestMappingSeq_graph_Exception(), TestMappingSeq_loc(), TestMappingSeq_loc_Exception(), CMacroFunction_FixFormat::TheFunction(), CPCRPrimerSeq::TrimJunk(), CWrongIllegalQuals::WrongQualsToNote(), CConvertGeneToRNA::x_AddGeneFieldsToComment(), CValidError_bioseq::x_CheckSingleStrandedRNAViruses(), CNewCleanup_imp::x_CleanGenbankKeywords(), CGb_qual::x_CleanupRptAndReplaceSeq(), CConvertFeatureBase::x_ConvertToCDS(), CCmdConvertToDelayedGenProdSetQuals::x_CreateActionCmd(), CBioseqEditor::x_DeleteObject(), CCleanupApp::x_FixCDS(), CConvertFeatureBase::x_GetCDSProduct(), CBioseqEditor::x_GetDeleteCommand(), CSeq_align_Mapper_Base::x_GetDstSpliced(), CConvertFeatureBase::x_MoveFeatureToProtein(), CNewCleanup_imp::x_OrgModBC(), CStringConstraintPanel::x_ReplaceChoices(), CConvertFeatureBase::x_SimpleConversion(), and CNewCleanup_imp::x_SubSourceBC().

◆ padding

n padding

◆ possible

use n only the LMDB cache</td > n</tr > n< tr > n< td ></td > n< td > use the LMDB cache if at all possible

◆ provided

fallback to Cassandra storage</td > n</tr > n</table > n</td > n< td > no and not provided</td > n< td ></td > n</tr > n< tr > n< td > tse</td > n< td > optional</td > n< td > String</td > n< td class=\"description\"> TSE option controls what blob is provided

Definition at line 85 of file introspection_html.hpp.

Referenced by CMsvcSite::CMsvcSite().

◆ SI2CSI

use only n Cassandra database for the lookups</td > n</tr > n< tr > n< td > yes</td > n< td > do not use tables SI2CSI

Definition at line 144 of file introspection_html.hpp.

◆ size

n font size

Definition at line 14 of file introspection_html.hpp.

◆ table

n n table
Initial value:
{\n"
" border-collapse: collapse
static Uint4 border[]
yy_size_t n

Definition at line 5 of file introspection_html.hpp.

Referenced by CSeqsRange::Add(), AddAssemblyUserFieldsFromSeqTable(), AddBioseqToTable(), CExportTableDlg::AddCdsGeneMrnaTable(), AddColumnsToFeatureTable(), CExportTableDlg::AddDblinkToTable(), CExportTableDlg::AddDeflinesToTable(), AddFeatureSeqTableRowToSeqEntry(), AddFeatureSeqTableToSeqEntry(), CExportTableDlg::AddFeaturesToTable(), AddFeatureToSeqTable(), SSeqTableContent::AddFixedInt(), SSeqTableContent::AddFixedSeq_id(), SSeqTableContent::AddFixedSeq_loc(), SSeqTableContent::AddFixedString(), AddIdsFromSeqEntryToTable(), AddIntColumnToTable(), CReadBlastApp::addLocation(), AddMiscColumnsToTable(), CPsgCgiApp::AddParamsTable(), AddProblemsColumnToFeatureSeqTable(), CExportTableDlg::AddPubsToTable(), CExportTableDlg::AddRnaToTable(), CTableAnnotDataSource::AddSeqLoc(), CTableAnnotDataSource::AddSnpSeqLoc(), CExportTableDlg::AddSourceToTable(), AddStringColumnToTable(), AddValueToTable(), CCSraDb_Impl::AlnTable(), AppendAccSubstitutionParameter(), AppendFmtParameter(), AppendId2InfoParameter(), AppendSendBlobIfSmallParameter(), AppendTseOptionParameter(), AppendUseCacheParameter(), ApplyFeatureSeqTableToSeqEntry(), ApplyReplacementIds(), ApplyToTable(), SColumn::Attach(), SCommonStrings::Attach(), SCommon8Bytes::Attach(), BlastInitialWordParametersNew(), BOOST_AUTO_TEST_CASE(), BuildChimeraValuesTableFromSeqEntry(), BuildCommentDescriptorValuesTableFromSeqEntry(), BuildDBLinkValuesTableFromSeqEntry(), BuildFeatureSeqTableFromSeqEntry(), BuildMolInfoValuesTableFromSeqEntry(), CAssignColumnValueDlg::CanAssignColumn(), CCopyColumnDlg::CanCopyColumn(), CNCBlobStorage::ChangeCacheDeadTime(), CheckDuplicates(), CHTML_table_Cache::CHTML_table_Cache(), CKMetadata::CKMetadata(), CKTable::CKTable(), CSubPrep_panel::ClearSeqTechValues(), CNcbiTable< TValue, TRow, TColumn >::CNcbiTable(), CSeq_loc_Conversion::Convert(), convert_1_to_1(), convert_1_to_2(), convert_1_to_4(), ConvertTableColumns(), CTableImportDataSource::ConvertToSeqAnnot(), copy_1_to_1_reverse(), copy_2bit_any(), copy_2bit_table(), copy_2bit_table_reverse(), copy_4bit_any(), copy_4bit_table(), copy_4bit_table_reverse(), copy_8bit_any(), copy_8bit_table(), copy_8bit_table_reverse(), CopyTableColumns(), CNucProp::CountNmers(), CTableAnnotDataSource::CreateFeature(), CTableAnnotDataSource::CreateSnpFeature(), CTableAnnotDataSource::CreateSnps(), CPagerBox::CreateSubNodes(), CSNPDb_Impl::CSNPDb_Impl(), CVDBCursor::CVDBCursor(), CVDBTableIndex::CVDBTableIndex(), CCursor::Delete(), SrcEditDialog::DeleteTableRow(), DeleteTableRow(), CLDS2_Database::Dump(), CSequenceEditingEventHandler::ExportStructuredCommentsTable(), CSNPDb_Impl::Extra(), CWGSDb_Impl::Feat(), SrcEditDialog::FindBadColumns(), CTableAnnotDataSource::FindLocations(), SrcEditDialog::FindSeqIDColumn(), FindSeqIDColumn(), get_date_range_rule_collection(), GetAlignmentCollectionScoreFactoryTable(), SSeqTableContent::GetAnnot(), CVDBGraphSeqIterator::GetAnnot(), CCassConnection::GetClusteringKeyColumnNames(), CCassConnection::GetColumnNames(), CFeatureTableCommandConverter::GetCommandFromValuesTable(), CEventView::GetCommandHandler(), GetFeaturesFromSeqEntry(), GetIdsFromSeqEntry(), GetMiscTableFromSeqEntry(), GetMultiScoresFactoryTable(), CCassConnection::GetPartitionKeyColumnNames(), GetReportFromMailReportTable(), CTableSelectionBioTreeContainer::GetRows(), CVcfTableSelection::GetRows(), CTableSelectionBioTreeContainer::GetSelection(), CVcfTableSelection::GetSelection(), GetSeqTableForSrcQualFromSeqEntry(), GetSeqTableFromSeqEntry(), CSubPrep_panel::GetSeqTechTable(), CCassConnection::GetSizeEstimates(), CGffRecord::GetSubtypeOf(), GetTableMetaPointer(), CSeqTableInfo::GetType(), GetValueFromTable(), CBulkCountryEdit::GetValuesTable(), CBulkCDS::GetValuesTableFromSeqEntry(), CBulkGene::GetValuesTableFromSeqEntry(), CBulkMiscFeat::GetValuesTableFromSeqEntry(), CBulkRna::GetValuesTableFromSeqEntry(), CCompareWithBiosample::GetValuesTableFromSeqEntry(), CCountryConflict::GetValuesTableFromSeqEntry(), CLatLonTool::GetValuesTableFromSeqEntry(), CUnculTaxTool::GetValuesTableFromSeqEntry(), CStructuredCommentCommandConverter::GetValuesTableFromSeqEntry(), CFeatureTableCommandConverter::GetValuesTableFromSeqEntry(), CWGSDb_Impl::GiIdx(), hoge_blkin(), inflate_table(), CVDBCursor::Init(), is_contained_lookup(), CSeqTableInfo::IsGoodFeatTable(), JumperExtendLeftCompressed(), JumperExtendLeftCompressedWithTraceback(), JumperExtendLeftCompressedWithTracebackOptimal(), JumperExtendRightCompressed(), JumperExtendRightCompressedWithTraceback(), JumperExtendRightCompressedWithTracebackOptimal(), CColumnScoringMethod::Load(), loadMatrix(), loadMatrixOLD(), lookup(), MakeMailReportPostReport(), MakeMailReportPreReport(), CWig2tableApplication::MakeTable(), CNCBlobStorage::MeasureDB(), odbc_lookup(), CSubPrep_panel::OkToBulkEditSeqTech(), CTblEditDlg::OnClearTableClick(), CAssemblyTrackingPanel::OnExportIntervalsBtnClick(), CAssemblyTrackingPanel::OnExportListBtnClick(), CAssemblyTrackingPanel::OnImportIntervalsBtnClick(), CSmartFileTextToolbar::OnJobNotification(), CPhyloTreeWidget::OnLoadAttributes(), CTblEditDlg::OnUpdateProblems(), CWGSDb_Impl::OpenIndex(), CWGSDb_Impl::OpenTable(), CNcbiTable< TValue, TRow, TColumn >::operator=(), CSeqTable_multi_data::CReserveHook::PreReadChoiceVariant(), CBiosampleChkApp::PrintTable(), CReadBlastApp::processAnnot(), CCgiSessionSampleApplication::ProcessRequest(), CWGSDb_Impl::Prot(), CWGSDb_Impl::Prot0(), CWGSDb_Impl::ProtIdx(), ReadTabDelimitedTable(), CCSraDb_Impl::RefTable(), CNCBlobStorage::ReleaseCacheData(), RemoveFromTable(), CReadBlastApp::RemoveInterim(), CReadBlastApp::RemoveInterim2(), CReadBlastApp::RemoveProblems(), RemoveRowsFromTable(), CTableAnnotDataSource::RemoveSeqLocs(), RemoveSeqTableColumnByName(), RemoveTableRowsThatDoNotMatchStringConstraint(), ReportMailReportLine(), revcmp(), s_2naReverse(), s_4naReverse(), s_BlastDiagHashInsert(), s_BlastDiagHashRetrieve(), s_BuildCompressedTranslation(), s_ConvertBits_2na_to_4na(), s_CreateHTMLPage(), s_CreateHTMLTable(), s_CreateTable(), s_FindColumn(), s_GetAnnotId(), s_GetKeyCacheData(), s_GetNthColumn(), CSeqFeatData::s_InitSubtypesTable(), s_Ncbi2naComplement(), s_Ncbi2naRevCmp(), s_Ncbi4naComplement(), s_Ncbi4naRevCmp(), s_PrintTable(), s_UpdateCRC32Forward(), s_UpdateCRC32Reverse(), CExportTableDlg::SaveTable(), CExportTableDlg::SaveTableFile(), CWGSDb_Impl::Scf(), CCSraDb_Impl::SeqTable(), SeqTableFromAssemblyFields(), CMoreTableColsDlg::SetTable(), CCassandraFullscanPlan::SetTable(), NuclWordFinderTextFixture::setupExtendWord(), CSeqTableGridPanel::SetValuesTable(), CSubPrep_panel::SetWizardType(), SwapTableColumns(), CSeqVectorTypes::sx_GetConvertTable(), tds_deinit_tvp(), tds_mstabletype_put(), tds_mstabletype_put_info(), CProteinAlignText::TranslateTriplet(), UnicodeToAscii(), unlookup(), CCursor::Update(), CChimeraPanel::UpdateChimera(), CwxMarkerInfoPanel::UpdateMarker(), CSubmissionPrepMainPanel::UpdateSeqTechCtrls(), CSubPrepFieldEditor::UpdateValues(), UTF8ToAscii(), UTF8ToAsciiString(), CNCBlobStorage::WriteBlobStat(), x_AppendAnyTo2(), x_AppendAnyTo4(), x_AppendAnyTo8(), CExpiredCleaner::x_CleanNextBucket(), CSubPrep_panel::x_ClearWizardSpecificData(), CSeqConvert_imp::x_Convert2naExpandTo4na(), CSeqConvert_imp::x_Convert2naExpandTo8na(), CSeqConvert_imp::x_Convert2naTo4na(), CSeqConvert_imp::x_Convert4naTo2na(), CSeqConvert_imp::x_Convert8naTo2na(), CSeqConvert_imp::x_Convert8naTo2naExpand(), CSeqConvert_imp::x_ConvertIupacnaTo2na(), CSeqConvert_imp::x_ConvertIupacnaTo4na(), CNcbiTable< TValue, TRow, TColumn >::x_Copy(), CSeqVector_CI::x_FillCache(), CTblEditDlg::x_FindBadImportColumns(), CTL_CursorCmd::x_GetBlobDescriptor(), CTL_CursorCmdExpl::x_GetBlobDescriptor(), CSubPrep_panel::x_GetMicrosatelliteTableConverter(), CSeqVector::x_GetPacked2naSeqData(), CSeqVector::x_GetPacked4naSeqData(), CSeqVector::x_GetPacked8SeqData(), CSubPrep_panel::x_GetSequenceLengths(), CKMetadata::x_Init(), CPrintSetupDlg::x_Init(), CSeq_annot_Info::x_InitFeatTable(), CAlignmentCollectionScore::x_LoadNamedScores(), CVDBGraphSeqIterator::x_MakeTable(), CSpaceShrinker::x_MoveNextRecord(), x_SetAllTableStringValues(), CSubPrepFieldEditor::x_SetOneValue(), x_TestList(), x_TestPair(), CWiggleWriter::xIsFixedStepData(), CWiggleWriter::xIsVariableStepData(), CWiggleReader::xMakeTable(), CWiggleWriter::xTableGetChromName(), CWiggleWriter::xTableGetPosIn(), CWiggleWriter::xTableGetPosOut(), CWiggleWriter::xTableGetValue(), CBedGraphWriter::xWriteAnnotSeqTable(), CWiggleWriter::xWriteAnnotTable(), CWiggleWriter::xWriteTableBedStyle(), CWiggleWriter::xWriteTableFixedStep(), and CWiggleWriter::xWriteTableVariableStep().

◆ td

n n table nested td

◆ th

n n th

◆ then

then

Definition at line 149 of file introspection_html.hpp.

◆ weight

n font weight

◆ whole

fallback to Cassandra storage</td > n</tr > n</table > n</td > n< td > no and not provided</td > n< td ></td > n</tr > n< tr > n< td > tse</td > n< td > optional</td > n< td > String</td > n< td class=\"description\"> TSE option controls what blob is whole

◆ yes

fallback to Cassandra storage</td > n</tr > n</table > n</td > n< td > yes
Modified on Wed Jul 24 17:20:55 2024 by modify_doxy.py rev. 669887