NCBI C++ ToolKit
Macros | Functions
inversion_merge_aligner.cpp File Reference
#include <ncbi_pch.hpp>
#include <corelib/ncbiexpt.hpp>
#include <corelib/ncbi_system.hpp>
#include <math.h>
#include <algo/align/ngalign/inversion_merge_aligner.hpp>
#include <objects/seqloc/Seq_loc.hpp>
#include <objects/seqloc/Seq_id.hpp>
#include <objmgr/scope.hpp>
#include <algo/blast/api/blast_types.hpp>
#include <algo/blast/api/bl2seq.hpp>
#include <algo/blast/api/blast_options_handle.hpp>
#include <algo/blast/api/blast_nucl_options.hpp>
#include <algo/blast/api/disc_nucl_options.hpp>
#include <algo/align/util/score_builder.hpp>
#include <objects/seqalign/Seq_align.hpp>
#include <objects/seqalign/Seq_align_set.hpp>
#include <objects/seqalign/Dense_seg.hpp>
#include <objmgr/seq_vector.hpp>
#include <algo/blast/api/local_blast.hpp>
#include <algo/blast/blastinput/blastn_args.hpp>
#include <algo/sequence/align_cleanup.hpp>
+ Include dependency graph for inversion_merge_aligner.cpp:

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Macros

#define MARKLINE   cerr << __FILE__ << ":" << __LINE__ << endl
 

Functions

 USING_SCOPE (objects)
 

Macro Definition Documentation

◆ MARKLINE

#define MARKLINE   cerr << __FILE__ << ":" << __LINE__ << endl

Definition at line 62 of file inversion_merge_aligner.cpp.

Function Documentation

◆ USING_SCOPE()

USING_SCOPE ( objects  )
Modified on Thu Feb 29 12:22:00 2024 by modify_doxy.py rev. 669887