#include <ncbi_pch.hpp>#include <corelib/ncbiexpt.hpp>#include <corelib/ncbi_system.hpp>#include <math.h>#include <algo/align/ngalign/inversion_merge_aligner.hpp>#include <objects/seqloc/Seq_loc.hpp>#include <objects/seqloc/Seq_id.hpp>#include <objmgr/scope.hpp>#include <algo/blast/api/blast_types.hpp>#include <algo/blast/api/bl2seq.hpp>#include <algo/blast/api/blast_options_handle.hpp>#include <algo/blast/api/blast_nucl_options.hpp>#include <algo/blast/api/disc_nucl_options.hpp>#include <algo/align/util/score_builder.hpp>#include <objects/seqalign/Seq_align.hpp>#include <objects/seqalign/Seq_align_set.hpp>#include <objects/seqalign/Dense_seg.hpp>#include <objmgr/seq_vector.hpp>#include <algo/blast/api/local_blast.hpp>#include <algo/blast/blastinput/blastn_args.hpp>#include <algo/sequence/align_cleanup.hpp>
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Macros | |
| #define | MARKLINE cerr << __FILE__ << ":" << __LINE__ << endl |
Functions | |
| USING_SCOPE (objects) | |
Macro Definition Documentation
◆ MARKLINE
| #define MARKLINE cerr << __FILE__ << ":" << __LINE__ << endl |
Definition at line 62 of file inversion_merge_aligner.cpp.
Function Documentation
◆ USING_SCOPE()
| USING_SCOPE | ( | objects | ) |
