NCBI C++ ToolKit
Macros | Functions | Variables
kmer_unit_test.cpp File Reference
#include <ncbi_pch.hpp>
#include <corelib/ncbi_system.hpp>
#include <objmgr/object_manager.hpp>
#include <objects/seq/Bioseq.hpp>
#include <objects/seq/Seq_data.hpp>
#include <algo/cobalt/kmercounts.hpp>
#include "cobalt_test_util.hpp"
#include <corelib/test_boost.hpp>
+ Include dependency graph for kmer_unit_test.cpp:

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Macros

#define NCBI_BOOST_NO_AUTO_TEST_MAIN
 

Functions

 USING_SCOPE (cobalt)
 
 USING_SCOPE (objects)
 
static CRef< CBioseqs_CreateBioseq (const string &sequence, int id)
 
template<class TKmerCounts >
static void s_CreateKmerCounts (const string &seq, TKmerCounts &counts)
 
 BOOST_AUTO_TEST_CASE (TestSparseKmerCounts)
 
 BOOST_AUTO_TEST_CASE (TestKmerMethods)
 

Variables

 USING_NCBI_SCOPE
 

Macro Definition Documentation

◆ NCBI_BOOST_NO_AUTO_TEST_MAIN

#define NCBI_BOOST_NO_AUTO_TEST_MAIN

Definition at line 53 of file kmer_unit_test.cpp.

Function Documentation

◆ BOOST_AUTO_TEST_CASE() [1/2]

BOOST_AUTO_TEST_CASE ( TestKmerMethods  )

◆ BOOST_AUTO_TEST_CASE() [2/2]

BOOST_AUTO_TEST_CASE ( TestSparseKmerCounts  )

◆ s_CreateBioseq()

static CRef<CBioseq> s_CreateBioseq ( const string sequence,
int  id 
)
static

◆ s_CreateKmerCounts()

template<class TKmerCounts >
static void s_CreateKmerCounts ( const string seq,
TKmerCounts &  counts 
)
static

◆ USING_SCOPE() [1/2]

USING_SCOPE ( cobalt  )

◆ USING_SCOPE() [2/2]

USING_SCOPE ( objects  )

Variable Documentation

◆ USING_NCBI_SCOPE

USING_NCBI_SCOPE

Definition at line 61 of file kmer_unit_test.cpp.

Modified on Wed May 22 11:35:51 2024 by modify_doxy.py rev. 669887