local_search.cpp File Reference

This file implements the Uniform Blast Search Interface in terms of the local BLAST database search class NOTE: This is OBJECT MANAGER DEPENDANT because of its use of CDbBlast! More...

#include <ncbi_pch.hpp>
#include <objects/scoremat/Pssm.hpp>
#include <objects/scoremat/PssmWithParameters.hpp>
#include <objects/seqalign/Seq_align.hpp>
#include <objects/seqalign/Seq_align_set.hpp>
#include <objects/seqset/Seq_entry.hpp>
#include <algo/blast/api/seqsrc_seqdb.hpp>
#include <objmgr/object_manager.hpp>
#include <algo/blast/api/local_search.hpp>
#include <algo/blast/api/psiblast.hpp>
#include <algo/blast/api/objmgrfree_query_data.hpp>
#include "psiblast_aux_priv.hpp"

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Detailed Description

This file implements the Uniform Blast Search Interface in terms of the local BLAST database search class NOTE: This is OBJECT MANAGER DEPENDANT because of its use of CDbBlast!

Definition in file local_search.cpp.