macro_biodata_iter.hpp File Reference

Biodata iterators for macro execution. More...

#include <corelib/ncbiobj.hpp>
#include <serial/objectinfo.hpp>
#include <serial/iterator.hpp>
#include <objects/submit/Seq_submit.hpp>
#include <objects/submit/Submit_block.hpp>
#include <objects/biblio/Cit_sub.hpp>
#include <objects/seqfeat/BioSource.hpp>
#include <objects/seq/MolInfo.hpp>
#include <objects/general/User_object.hpp>
#include <objects/seqfeat/Seq_feat.hpp>
#include <objects/seq/Pubdesc.hpp>
#include <objects/pub/Pub.hpp>
#include <objects/taxon3/itaxon3.hpp>
#include <objmgr/seqdesc_ci.hpp>
#include <objmgr/bioseq_ci.hpp>
#include <objmgr/feat_ci.hpp>
#include <objmgr/align_ci.hpp>
#include <objmgr/seq_entry_ci.hpp>
#include <objmgr/seq_entry_handle.hpp>
#include <objmgr/util/autodef_options.hpp>
#include <gui/gui_export.h>
#include <gui/objutils/objects.hpp>
#include <gui/objutils/macro_exec.hpp>
#include <gui/objutils/macro_cmd_composite.hpp>
#include <gui/objutils/macro_hugecontext.hpp>
#include <unordered_map>

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Classes
class	IMacroBioDataIter
	IMacroBioDataIter - common interface of all iterators used in the editing macros The type of the iterator is defined by "foreach" selector in the macro. More...
struct	IMacroBioDataIter::STableToApply
class	CMacroBioData_FeatIterBase
	CMacroBioData_FeatIterBase - iterates over any type of features. More...
struct	SFeatInterval
class	CMacroBioData_FeatIntervalIter
	CMacroBioData_FeatIntervalIter - iterates over features within [|(left, right]|) intervals. More...
class	CMacroBioData_BioSourceIter
	CMacroBioData_BioSourceIter - iterates over all biosource descriptors and features in the seq-entry. More...
class	CMacroBioData_PubdescIter
	CMacroBioData_PubdescIter - iterates over all publication descriptors and features in the seq-entry. More...
class	CMacroBioData_PubdescIter::CSubmitblockIter
class	CMacroBioData_SeqdescIter
	CMacroBioData_SeqdescIter- iterates over all types of sequence descriptors. More...
class	CMacroBioData_MolInfoIter
	CMacroBioData_MolInfoIter - iterates over all molinfos in the seq-entry. More...
class	CMacroBioData_UserObjectIter
	CMacroBioData_UserObjectIter - iterates over all user objects in the seq-entry. More...
class	CMacroBioData_StructCommentIter
	CMacroBioData_StructCommentIter - iterates over all structured comments in the seq-entry. More...
class	CMacroBioData_DBLinkIter
	CMacroBioData_DBLinkIter - iterates over all DBlinks in the seq-entry. More...
class	CMacroBioData_AutodefOptsIter
	CMacroBioData_AutodefOptsIter - iterates over all AutodefOptions in the seq-entry. More...
class	CMacroBioData_SeqAlignIter
	CMacroBioData_SeqAlignIter - iterates over sequence alignments. More...
class	CMacroBioData_SeqIter
	CMacroBioData_SeqIter- iterates over sequences (na and aa) More...
class	CMacroBioData_SeqNAIter
class	CMacroBioData_SeqAAIter
class	CMacroBioData_SeqSetIter
	CMacroBioData_SeqSetIter- iterates over sets. More...
class	CMacroBioData_TSEntryIter
	CMacroBioData_TSEntryIterBase - iterator pointing to the top seq-entry. More...

Detailed Description

Biodata iterators for macro execution.

Definition in file macro_biodata_iter.hpp.