magicblast.hpp File Reference

Declares CMagicBlast, the C++ API for the BLAST RNA-Seq mapping engine. More...

#include <algo/blast/core/spliced_hits.h>
#include <algo/blast/api/setup_factory.hpp>
#include <algo/blast/api/query_data.hpp>
#include <algo/blast/api/local_db_adapter.hpp>
#include <algo/blast/api/blast_results.hpp>
#include <algo/blast/api/magicblast_options.hpp>
#include <algo/blast/api/prelim_stage.hpp>

Include dependency graph for magicblast.hpp:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Go to the SVN repository for this file.

Classes
class	CMagicBlast
	BLAST RNA-Seq mapper. More...
class	CMagicBlastResults
	Magic-BLAST results for a single query/read or a pair of reads. More...
class	CMagicBlastResultSet
	Results of Magic-BLAST mapping. More...

Detailed Description

Declares CMagicBlast, the C++ API for the BLAST RNA-Seq mapping engine.

Definition in file magicblast.hpp.