NCBI C++ ToolKit
magicblast_thread.hpp
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1 /* $Id: magicblast_thread.hpp 88808 2020-01-21 10:48:40Z boratyng $
2  * ===========================================================================
3  *
4  * PUBLIC DOMAIN NOTICE
5  * National Center for Biotechnology Information
6  *
7  * This software/database is a "United States Government Work" under the
8  * terms of the United States Copyright Act. It was written as part of
9  * the author's official duties as a United States Government employee and
10  * thus cannot be copyrighted. This software/database is freely available
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24  * ===========================================================================
25  *
26  * Author: Greg Boratyn
27  *
28  * File description:
29  * Class for MT MagicBlast searches
30  *
31  */
32 
33 
34 #ifndef APP_MAGICBLAST___MAGICBLAST_THREAD__HPP
35 #define APP_MAGICBLAST___MAGICBLAST_THREAD__HPP
36 
37 #include <corelib/ncbithr.hpp>
41 
42 
44 BEGIN_SCOPE(blast)
46 
47 class CMagicBlastThread : public CThread
48 {
49 public:
56  CNcbiOstream* unaligned_stream);
57 
58 protected:
59  virtual ~CMagicBlastThread() {}
60  virtual void* Main(void);
61 
62 private:
70 };
71 
72 
73 END_SCOPE(blast)
75 
76 
77 #endif /* APP_MAGICBLAST___MAGICBLAST_THREAD__HPP */
Interface for converting blast-related command line arguments into blast options.
Interface for converting sources of sequence data into blast sequence input.
CNcbiOstream * m_OutUnalignedStream
CRef< CBlastDatabaseArgs > m_DatabaseArgs
CNcbiOstream & m_OutStream
CRef< CMapperFormattingArgs > m_FormattingArgs
CBlastInputOMF & m_Input
CRef< CMapperQueryOptionsArgs > m_QueryOptions
CRef< CMagicBlastOptionsHandle > m_Options
std::ofstream out("events_result.xml")
main entry point for tests
int Main(int argc, const char *argv[])
#define END_NCBI_SCOPE
End previously defined NCBI scope.
Definition: ncbistl.hpp:103
#define END_SCOPE(ns)
End the previously defined scope.
Definition: ncbistl.hpp:75
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
Definition: ncbistl.hpp:100
#define BEGIN_SCOPE(ns)
Define a new scope.
Definition: ncbistl.hpp:72
IO_PREFIX::ostream CNcbiOstream
Portable alias for ostream.
Definition: ncbistre.hpp:149
static int input()
USING_SCOPE(objects)
Multi-threading – classes, functions, and features.
Modified on Sat Jul 13 13:35:03 2024 by modify_doxy.py rev. 669887