#include <ncbi_pch.hpp>
#include <corelib/test_boost.hpp>
#include <serial/serial.hpp>
#include <serial/objistr.hpp>
#include <objects/seqalign/Seq_align.hpp>
#include <objects/seqalign/Seq_align_set.hpp>
#include <objects/seqalign/Spliced_seg.hpp>
#include <objects/seqalign/Spliced_exon.hpp>
#include <objects/seqalign/Splice_site.hpp>
#include <objects/seqalign/Product_pos.hpp>
#include <objects/seqset/Bioseq_set.hpp>
#include <objects/seqset/Seq_entry.hpp>
#include <objects/seq/Bioseq.hpp>
#include <objects/seq/Seq_descr.hpp>
#include <objects/general/User_object.hpp>
#include <algo/blast/api/magicblast.hpp>
#include <algo/blast/api/objmgrfree_query_data.hpp>
#include <algo/blast/api/magicblast_options.hpp>
#include <algo/blast/api/local_db_adapter.hpp>
#include "ensure_enough_corelib.hpp"

Include dependency graph for magicblast_unit_test.cpp:

Go to the SVN repository for this file.

Classes
struct	CMagicBlastTestFixture

struct	SExon

struct	SMatch

Functions
	BOOST_AUTO_TEST_CASE (MappingNonMatch)

	BOOST_AUTO_TEST_CASE (MappingAllConcordant)

	BOOST_AUTO_TEST_CASE (MappingAllDiscordant)

	BOOST_AUTO_TEST_CASE (MappingNoPairs)

	BOOST_AUTO_TEST_CASE (MappingPaired)

Function Documentation

◆ BOOST_AUTO_TEST_CASE() [1/5]

BOOST_AUTO_TEST_CASE ( MappingAllConcordant )

Definition at line 135 of file magicblast_unit_test.cpp.

References count, MSerial_AsnText, r(), results, and CMagicBlast::RunEx().

◆ BOOST_AUTO_TEST_CASE() [2/5]

BOOST_AUTO_TEST_CASE ( MappingAllDiscordant )

Definition at line 159 of file magicblast_unit_test.cpp.

References count, MSerial_AsnText, r(), results, and CMagicBlast::RunEx().

◆ BOOST_AUTO_TEST_CASE() [3/5]

BOOST_AUTO_TEST_CASE ( MappingNonMatch )

Definition at line 116 of file magicblast_unit_test.cpp.

References MSerial_AsnText, results, and CMagicBlast::RunEx().

◆ BOOST_AUTO_TEST_CASE() [4/5]

BOOST_AUTO_TEST_CASE ( MappingNoPairs )

Definition at line 183 of file magicblast_unit_test.cpp.

References SExon::acceptor, SExon::donor, eNa_strand_minus, eNa_strand_plus, SExon::gen_end, SExon::gen_start, SExon::gen_strand, CSpliced_seg_Base::GetExons(), CSpliced_seg_Base::GetProduct_length(), MSerial_AsnText, SExon::prod_end, SExon::prod_start, SExon::prod_strand, results, and CMagicBlast::Run().

◆ BOOST_AUTO_TEST_CASE() [5/5]

BOOST_AUTO_TEST_CASE ( MappingPaired )