NCBI C++ ToolKit
Classes | Functions
magicblast_unit_test.cpp File Reference
#include <ncbi_pch.hpp>
#include <corelib/test_boost.hpp>
#include <serial/serial.hpp>
#include <serial/objistr.hpp>
#include <objects/seqalign/Seq_align.hpp>
#include <objects/seqalign/Seq_align_set.hpp>
#include <objects/seqalign/Spliced_seg.hpp>
#include <objects/seqalign/Spliced_exon.hpp>
#include <objects/seqalign/Splice_site.hpp>
#include <objects/seqalign/Product_pos.hpp>
#include <objects/seqset/Bioseq_set.hpp>
#include <objects/seqset/Seq_entry.hpp>
#include <objects/seq/Bioseq.hpp>
#include <objects/seq/Seq_descr.hpp>
#include <objects/general/User_object.hpp>
#include <algo/blast/api/magicblast.hpp>
#include <algo/blast/api/objmgrfree_query_data.hpp>
#include <algo/blast/api/magicblast_options.hpp>
#include <algo/blast/api/local_db_adapter.hpp>
#include "ensure_enough_corelib.hpp"
+ Include dependency graph for magicblast_unit_test.cpp:

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Classes

struct  CMagicBlastTestFixture
 
struct  SExon
 
struct  SMatch
 

Functions

 BOOST_AUTO_TEST_CASE (MappingNonMatch)
 
 BOOST_AUTO_TEST_CASE (MappingAllConcordant)
 
 BOOST_AUTO_TEST_CASE (MappingAllDiscordant)
 
 BOOST_AUTO_TEST_CASE (MappingNoPairs)
 
 BOOST_AUTO_TEST_CASE (MappingPaired)
 

Function Documentation

◆ BOOST_AUTO_TEST_CASE() [1/5]

BOOST_AUTO_TEST_CASE ( MappingAllConcordant  )

Definition at line 135 of file magicblast_unit_test.cpp.

References MSerial_AsnText, r(), and CMagicBlast::RunEx().

◆ BOOST_AUTO_TEST_CASE() [2/5]

BOOST_AUTO_TEST_CASE ( MappingAllDiscordant  )

Definition at line 159 of file magicblast_unit_test.cpp.

References MSerial_AsnText, r(), and CMagicBlast::RunEx().

◆ BOOST_AUTO_TEST_CASE() [3/5]

BOOST_AUTO_TEST_CASE ( MappingNonMatch  )

Definition at line 116 of file magicblast_unit_test.cpp.

References MSerial_AsnText, and CMagicBlast::RunEx().

◆ BOOST_AUTO_TEST_CASE() [4/5]

BOOST_AUTO_TEST_CASE ( MappingNoPairs  )

◆ BOOST_AUTO_TEST_CASE() [5/5]

BOOST_AUTO_TEST_CASE ( MappingPaired  )
Modified on Fri Feb 23 11:43:47 2024 by modify_doxy.py rev. 669887