mask_writer_blastdb_maskinfo.hpp File Reference

#include <objtools/seqmasks_io/mask_writer.hpp>
#include <objects/blastdb/Blast_db_mask_info.hpp>
#include <objects/blastdb/Blast_mask_list.hpp>
#include <objects/blastdb/Blast_filter_program.hpp>
#include <corelib/ncbiargs.hpp>

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Classes
class	CMaskWriterBlastDbMaskInfo
	Output filter to print masked sequence locations as Blast-db-mask-info objects. More...

Functions
string	BuildAlgorithmParametersString (const CArgs &args)
	Builds an algorithm options string for the filtering applications (segmasker, dustmasker) by examining the command line arguments specified. More...

Function Documentation

BuildAlgorithmParametersString()

string BuildAlgorithmParametersString

(

const CArgs &

args

)

Builds an algorithm options string for the filtering applications (segmasker, dustmasker) by examining the command line arguments specified.

Parameters

args	Command line arguments [in]

Returns

string with algorithm parameters or empty string is algorithm cannot be determined

Definition at line 181 of file mask_writer_blastdb_maskinfo.cpp.

References CArgs::Exist().

Referenced by CDustMaskApplication::x_GetWriter(), SegMaskerApplication::x_GetWriter(), and CWinMaskConfig::x_GetWriter().