NCBI C++ ToolKit
mask_writer_int.cpp
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1 /* $Id: mask_writer_int.cpp 72378 2016-05-04 14:59:01Z camacho $
2  * ===========================================================================
3  *
4  * PUBLIC DOMAIN NOTICE
5  * National Center for Biotechnology Information
6  *
7  * This software/database is a "United States Government Work" under the
8  * terms of the United States Copyright Act. It was written as part of
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25  *
26  * Author: Aleksandr Morgulis
27  *
28  * File Description:
29  * CMaskWriterInt class member and method definitions.
30  *
31  */
32 #include <ncbi_pch.hpp>
35 
36 
38 
39 //-------------------------------------------------------------------------
40 void CMaskWriterInt::Print( objects::CBioseq_Handle& bsh,
41  const TMaskList & mask,
42  bool parsed_id )
43 {
44  PrintId( bsh, parsed_id );
45  os << endl;
46  PrintMasks(os, mask);
47 }
48 
50 {
51  ITERATE(TMaskList, i, mask) {
52  os << i->first << " - " << i->second << "\n";
53  }
54 }
55 
56 
ncbi::TMaskedQueryRegions mask
virtual void Print(objects::CBioseq_Handle &bsh, const TMaskList &mask, bool parsed_id=false)
Send the masking data to the output stream.
static void PrintMasks(CNcbiOstream &os, const TMaskList &mask)
Print masks only.
virtual void PrintId(objects::CBioseq_Handle &bsh, bool parsed_id)
Output of the sequence id.
Definition: mask_writer.cpp:49
CNcbiOstream & os
the standard C++ ostream object
vector< TMaskedInterval > TMaskList
A type representing the total of masking information about a sequence.
Definition: mask_writer.hpp:85
#define ITERATE(Type, Var, Cont)
ITERATE macro to sequence through container elements.
Definition: ncbimisc.hpp:815
#define END_NCBI_SCOPE
End previously defined NCBI scope.
Definition: ncbistl.hpp:103
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
Definition: ncbistl.hpp:100
IO_PREFIX::ostream CNcbiOstream
Portable alias for ostream.
Definition: ncbistre.hpp:149
int i
Modified on Fri Jan 05 07:23:08 2024 by modify_doxy.py rev. 669887