NCBI C++ ToolKit
Macros | Functions | Variables
matrix_freq_ratios.c File Reference

Definitions for various scoring matrices' frequency ratios. More...

#include "matrix_freq_ratios.h"
#include "blast_psi_priv.h"
+ Include dependency graph for matrix_freq_ratios.c:

Go to the source code of this file.

Go to the SVN repository for this file.

Macros

#define BLOSUM62_20A_SCALE_MULTIPLIER   0.9666
 Additional bit scale multiplier for BLOSUM62_20A matrix. More...
 
#define BLOSUM62_20B_SCALE_MULTIPLIER   0.9344
 Additional bit scale multiplier for BLOSUM62_20B matrix. More...
 

Functions

SFreqRatios_PSIMatrixFrequencyRatiosNew (const char *matrix_name)
 Retrive the matrix's frequency ratios. More...
 
SFreqRatios_PSIMatrixFrequencyRatiosFree (SFreqRatios *freq_ratios)
 Deallocate the frequency ratios structure. More...
 

Variables

static const double BLOSUM45_FREQRATIOS [BLASTAA_SIZE][BLASTAA_SIZE]
 Underlying frequency ratios for BLOSUM45. More...
 
static const double BLOSUM50_FREQRATIOS [BLASTAA_SIZE][BLASTAA_SIZE]
 Underlying frequency ratios for BLOSUM50. More...
 
static const double BLOSUM62_FREQRATIOS [BLASTAA_SIZE][BLASTAA_SIZE]
 Underlying frequency ratios for BLOSUM62. More...
 
static const double BLOSUM80_FREQRATIOS [BLASTAA_SIZE][BLASTAA_SIZE]
 Underlying frequency ratios for BLOSUM80. More...
 
static const double BLOSUM90_FREQRATIOS [BLASTAA_SIZE][BLASTAA_SIZE]
 Underlying frequency ratios for BLOSUM90. More...
 
static const double PAM30_FREQRATIOS [BLASTAA_SIZE][BLASTAA_SIZE]
 Underlying frequency ratios for PAM30. More...
 
static const double PAM70_FREQRATIOS [BLASTAA_SIZE][BLASTAA_SIZE]
 Underlying frequency ratios for PAM70. More...
 
static const double PAM250_FREQRATIOS [BLASTAA_SIZE][BLASTAA_SIZE]
 Underlying frequency ratios for PAM250. More...
 

Detailed Description

Definitions for various scoring matrices' frequency ratios.

Definition in file matrix_freq_ratios.c.

Macro Definition Documentation

◆ BLOSUM62_20A_SCALE_MULTIPLIER

#define BLOSUM62_20A_SCALE_MULTIPLIER   0.9666

Additional bit scale multiplier for BLOSUM62_20A matrix.

Definition at line 1638 of file matrix_freq_ratios.c.

◆ BLOSUM62_20B_SCALE_MULTIPLIER

#define BLOSUM62_20B_SCALE_MULTIPLIER   0.9344

Additional bit scale multiplier for BLOSUM62_20B matrix.

Definition at line 1640 of file matrix_freq_ratios.c.

Function Documentation

◆ _PSIMatrixFrequencyRatiosFree()

SFreqRatios* _PSIMatrixFrequencyRatiosFree ( SFreqRatios freq_ratios)

◆ _PSIMatrixFrequencyRatiosNew()

SFreqRatios* _PSIMatrixFrequencyRatiosNew ( const char *  matrix_name)

Variable Documentation

◆ BLOSUM45_FREQRATIOS

const double BLOSUM45_FREQRATIOS[BLASTAA_SIZE][BLASTAA_SIZE]
static

Underlying frequency ratios for BLOSUM45.

Definition at line 38 of file matrix_freq_ratios.c.

Referenced by _PSIMatrixFrequencyRatiosNew().

◆ BLOSUM50_FREQRATIOS

const double BLOSUM50_FREQRATIOS[BLASTAA_SIZE][BLASTAA_SIZE]
static

Underlying frequency ratios for BLOSUM50.

Definition at line 238 of file matrix_freq_ratios.c.

Referenced by _PSIMatrixFrequencyRatiosNew().

◆ BLOSUM62_FREQRATIOS

const double BLOSUM62_FREQRATIOS[BLASTAA_SIZE][BLASTAA_SIZE]
static

Underlying frequency ratios for BLOSUM62.

Definition at line 438 of file matrix_freq_ratios.c.

Referenced by _PSIMatrixFrequencyRatiosNew().

◆ BLOSUM80_FREQRATIOS

const double BLOSUM80_FREQRATIOS[BLASTAA_SIZE][BLASTAA_SIZE]
static

Underlying frequency ratios for BLOSUM80.

Definition at line 638 of file matrix_freq_ratios.c.

Referenced by _PSIMatrixFrequencyRatiosNew().

◆ BLOSUM90_FREQRATIOS

const double BLOSUM90_FREQRATIOS[BLASTAA_SIZE][BLASTAA_SIZE]
static

Underlying frequency ratios for BLOSUM90.

Definition at line 838 of file matrix_freq_ratios.c.

Referenced by _PSIMatrixFrequencyRatiosNew().

◆ PAM250_FREQRATIOS

const double PAM250_FREQRATIOS[BLASTAA_SIZE][BLASTAA_SIZE]
static

Underlying frequency ratios for PAM250.

Definition at line 1438 of file matrix_freq_ratios.c.

Referenced by _PSIMatrixFrequencyRatiosNew().

◆ PAM30_FREQRATIOS

const double PAM30_FREQRATIOS[BLASTAA_SIZE][BLASTAA_SIZE]
static

Underlying frequency ratios for PAM30.

Definition at line 1038 of file matrix_freq_ratios.c.

Referenced by _PSIMatrixFrequencyRatiosNew().

◆ PAM70_FREQRATIOS

const double PAM70_FREQRATIOS[BLASTAA_SIZE][BLASTAA_SIZE]
static

Underlying frequency ratios for PAM70.

Definition at line 1238 of file matrix_freq_ratios.c.

Referenced by _PSIMatrixFrequencyRatiosNew().

Modified on Wed May 29 18:39:19 2024 by modify_doxy.py rev. 669887