miscedit_util.hpp File Reference

#include <corelib/ncbistd.hpp>
#include <objects/seq/Seqdesc.hpp>
#include <objects/biblio/Cit_sub.hpp>
#include <objects/biblio/Auth_list.hpp>
#include <objects/biblio/Author.hpp>
#include <objects/biblio/Imprint.hpp>
#include <objects/pub/Pub.hpp>
#include <objects/seq/Pubdesc.hpp>
#include <objects/general/User_object.hpp>
#include <objects/general/User_field.hpp>
#include <objmgr/scope.hpp>
#include <objtools/edit/loc_edit.hpp>
#include <objtools/edit/parse_text_options.hpp>
#include <objtools/cleanup/capitalization_string.hpp>
#include <gui/objutils/cmd_composite.hpp>
#include <gui/widgets/wx/wx_utils.hpp>
#include <gui/packages/pkg_sequence_edit/featedit_util.hpp>
#include <gui/packages/pkg_sequence_edit/srcedit_util.hpp>
#include <gui/packages/pkg_sequence_edit/seqtable_util.hpp>

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Classes
class	CFieldHandlerFactory
class	CTextDescriptorField
class	CCommentDescField
class	CDefinitionLineField
class	CGenbankKeywordField
class	CGenomeProjectField
class	CBankITCommentField
class	CGeneralCommentField
class	CSeqIdField
class	CFileIDField
class	CGeneralIDField
class	CLocalIDField
class	CStructCommFieldValuePair
class	CStructCommDBName
class	CStructCommFieldName
class	CFlatFileField
class	CMiscSeqTableColumn

Typedefs
typedef vector< CRef< CMiscSeqTableColumn > >	TMiscSeqTableColumnList

Functions
CRef< CCmdComposite >	ConvertValCmd (CConstRef< CObject > object, CRef< CMiscSeqTableColumn > col1, CRef< CMiscSeqTableColumn > col2, objects::edit::EExistingText existing_text, objects::CScope &scope)
CRef< objects::CSeq_table >	GetMiscTableFromSeqEntry (const vector< string > &fields, objects::CSeq_entry_Handle entry)
void	AddMiscColumnsToTable (CRef< objects::CSeq_table > table, const vector< string > &fields, objects::CSeq_entry_Handle entry)
string	MakeTableMetaInfoString (objects::edit::EExistingText rule, bool erase_blanks)
CRef< objects::CUser_field >	MakeTableMetaInfoField (objects::edit::EExistingText rule, bool erase_blanks)
int	CountColumnConflicts (CRef< CMiscSeqTableColumn > col, vector< CConstRef< CObject > > objs, const string &val)
bool	DoesObjectMatchFieldConstraint (const CObject &object, const string &field_name, CRef< objects::edit::CStringConstraint > string_constraint, CRef< objects::CScope > scope)
bool	DoesApplyObjectMatchFieldConstraint (const objects::edit::CApplyObject &object, const string &field_name, CRef< objects::edit::CStringConstraint > string_constraint)
CRef< CCmdComposite >	GetPropagateDBLinkCmd (objects::CSeq_entry_Handle entry)
CRef< CCmdComposite >	GetCommandFromApplyObject (objects::edit::CApplyObject &obj)
void	GetViewObjects (IWorkbench *workbench, TConstScopedObjects &objects)
int	GetNumberOfViewedBioseqs (TConstScopedObjects &objects)
bool	FocusedOnNucleotides (TConstScopedObjects &objects, const objects::CSeq_entry_Handle &tse)
bool	FocusedOnAll (TConstScopedObjects &objects, const objects::CSeq_entry_Handle &tse)

Typedef Documentation

TMiscSeqTableColumnList

typedef vector< CRef<CMiscSeqTableColumn> > TMiscSeqTableColumnList

Definition at line 407 of file miscedit_util.hpp.

Function Documentation

AddMiscColumnsToTable()

void AddMiscColumnsToTable	(	CRef< objects::CSeq_table >	table,
		const vector< string > &	fields,
		objects::CSeq_entry_Handle	entry
	)

ConvertValCmd()

CRef<CCmdComposite> ConvertValCmd	(	CConstRef< CObject >	object,
		CRef< CMiscSeqTableColumn >	col1,
		CRef< CMiscSeqTableColumn >	col2,
		objects::edit::EExistingText	existing_text,
		objects::CScope &	scope
	)

CountColumnConflicts()

int CountColumnConflicts	(	CRef< CMiscSeqTableColumn >	col,
		vector< CConstRef< CObject > >	objs,
		const string &	val
	)

DoesApplyObjectMatchFieldConstraint()

bool DoesApplyObjectMatchFieldConstraint	(	const objects::edit::CApplyObject &	object,
		const string &	field_name,
		CRef< objects::edit::CStringConstraint >	string_constraint
	)

DoesObjectMatchFieldConstraint()

bool DoesObjectMatchFieldConstraint	(	const CObject &	object,
		const string &	field_name,
		CRef< objects::edit::CStringConstraint >	string_constraint,
		CRef< objects::CScope >	scope
	)

Referenced by CStructuredCommentField::GetObjects(), CTextDescriptorField::GetObjects(), and CDBLinkField::GetObjects().

FocusedOnAll()

bool FocusedOnAll	(	TConstScopedObjects &	objects,
		const objects::CSeq_entry_Handle &	tse
	)

Definition at line 3805 of file miscedit_util.cpp.

References CSeq_inst_Base::eMol_na, and GetNumberOfViewedBioseqs().

Referenced by s_Create5ColFeatTable().

FocusedOnNucleotides()

bool FocusedOnNucleotides	(	TConstScopedObjects &	objects,
		const objects::CSeq_entry_Handle &	tse
	)

Referenced by CApplyRNAITSDlg::GetCommand(), and s_Create5ColFeatTable().

GetCommandFromApplyObject()

CRef<CCmdComposite> GetCommandFromApplyObject

(

objects::edit::CApplyObject &

obj

)

Referenced by CLowerQuals::GetCommand(), and CRemoveTextInsideStrDlg::GetCommand().

GetMiscTableFromSeqEntry()

CRef<objects::CSeq_table> GetMiscTableFromSeqEntry	(	const vector< string > &	fields,
		objects::CSeq_entry_Handle	entry
	)

Referenced by x_TestList(), and x_TestPair().

GetNumberOfViewedBioseqs()

int GetNumberOfViewedBioseqs

(

TConstScopedObjects &

objects

)

Definition at line 3775 of file miscedit_util.cpp.

References ITERATE.

Referenced by FocusedOnAll(), and FocusedOnNucleotides().

GetPropagateDBLinkCmd()

CRef<CCmdComposite> GetPropagateDBLinkCmd

(

objects::CSeq_entry_Handle

entry

)

Referenced by CSequenceEditingEventHandler::PropagateDBLink().

GetViewObjects()

void GetViewObjects	(	IWorkbench *	workbench,
		TConstScopedObjects &	objects
	)

Definition at line 3744 of file miscedit_util.cpp.

References IProjectView::eType, ISelectionClient::GetActiveObjects(), IProjectView::GetLabel(), ISelectionClient::GetMainObject(), CProjectTreeView::GetSelection(), IServiceLocator::GetServiceByType(), CProjectTreeView::GetSingleObject(), IViewManagerService::GetViews(), and NON_CONST_ITERATE.

Referenced by CMRnaForCDS::apply(), CEditingBtnsPanel::EditSequence(), CSequenceEditingEventHandler::EditSequence(), CSelectFeatures::GetMainObject(), CSUCRefreshCntrl::GetRefreshedText(), CBulkCmdDlg::GetSelectedObjects(), CRemoveSet::GetSelectedObjects(), CBulkCmdDlg::GetTopLevelSeqEntryAndProcessor(), CFixForTransSplicing::Init(), CSUCRefreshCntrl::CSUCRefreshCntrlHelper::LoadData(), CClickableSortUniqueCount::LoadData(), CAddFeatureBetweenDlg::OnApplyButton(), CEditingBtnsPanel::OnDataChange(), CUnculTaxTool::OnRefreshBtn(), CEditingBtnsPanel::OnReverseAuthorNamesClick(), CSelectTargetDlg::OnSelTargetAcceptClick(), CEditingBtnsPanel::Save(), CGuiCoreHelper::Sync(), CValidatePanel::x_GetObjectsFromProjectItem(), CEditingBtnsPanel::x_GetSelectedLocations(), CCorrectGenesDialog::x_GetSelectedPair(), CEditingBtnsPanel::x_GetSelectedSeq(), CTableViewWithTextViewNav::x_GetViewObjects(), CSequinDesktopView::x_OnRefreshData(), CSequenceEditingEventHandler::x_OnSelectionEvent(), CFeatureTblFr::x_RefreshTable(), CSuspectProductRulesEditor::x_SetUpTSEandUnDoManager(), and CSequenceEditingEventHandler::x_SetUpTSEandUnDoManager().

MakeTableMetaInfoField()

CRef<objects::CUser_field> MakeTableMetaInfoField	(	objects::edit::EExistingText	rule,
		bool	erase_blanks
	)

Referenced by x_MakeDefaultTextOptions().

MakeTableMetaInfoString()

string MakeTableMetaInfoString	(	objects::edit::EExistingText	rule,
		bool	erase_blanks
	)