#include <ncbi_pch.hpp>#include <util/static_set.hpp>#include <util/static_map.hpp>#include <objtools/edit/field_handler.hpp>#include <gui/widgets/edit/molinfo_fieldtype.hpp>
Include dependency graph for molinfo_fieldtype.cpp:
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Typedefs | |
| typedef CStaticPairArrayMap< const char *, CMolInfo::TBiomol, PCase_CStr > | TCStringBiomolPairsMap |
| typedef CStaticPairArrayMap< const char *, CMolInfo::TBiomol, PCase_CStr > | TCStringTechPairsMap |
| typedef CStaticPairArrayMap< const char *, CMolInfo::TCompleteness, PCase_CStr > | TCStringCompletenessPairsMap |
| typedef CStaticPairArrayMap< const char *, CSeq_inst::TMol, PCase_CStr > | TCStringMolPairsMap |
| typedef CStaticPairArrayMap< const char *, CSeq_inst::TTopology, PCase_CStr > | TCStringTopologyPairsMap |
| typedef CStaticPairArrayMap< const char *, CSeq_inst::TStrand, PCase_CStr > | TCStringStrandPairsMap |
| typedef CStaticPairArrayMap< const char *, CSeq_inst::TRepr, PCase_CStr > | TCStringReprPairsMap |
Functions | |
| USING_SCOPE (objects) | |
| DEFINE_STATIC_ARRAY_MAP (TCStringBiomolPairsMap, k_biomol_names, s_map_biomol_names) | |
| DEFINE_STATIC_ARRAY_MAP (TCStringTechPairsMap, k_tech_names, s_map_tech_names) | |
| DEFINE_STATIC_ARRAY_MAP (TCStringCompletenessPairsMap, k_completeness_names, s_map_completeness_names) | |
| DEFINE_STATIC_ARRAY_MAP (TCStringMolPairsMap, k_mol_names, s_map_mol_names) | |
| DEFINE_STATIC_ARRAY_MAP (TCStringTopologyPairsMap, k_topology_names, s_map_topology_names) | |
| DEFINE_STATIC_ARRAY_MAP (TCStringStrandPairsMap, k_strand_names, s_map_strand_names) | |
| DEFINE_STATIC_ARRAY_MAP (TCStringReprPairsMap, k_repr_names, s_map_repr_names) | |
Variables | |
| static const SStaticPair< const char *, CMolInfo::TBiomol > | s_map_biomol_names [] |
| static const SStaticPair< const char *, CMolInfo::TTech > | s_map_tech_names [] |
| static const SStaticPair< const char *, CMolInfo::TCompleteness > | s_map_completeness_names [] |
| static const SStaticPair< const char *, CSeq_inst::TMol > | s_map_mol_names [] |
| static const SStaticPair< const char *, CSeq_inst::TTopology > | s_map_topology_names [] |
| static const SStaticPair< const char *, CSeq_inst::TStrand > | s_map_strand_names [] |
| static const SStaticPair< const char *, CSeq_inst::TRepr > | s_map_repr_names [] |
Typedef Documentation
◆ TCStringBiomolPairsMap
| typedef CStaticPairArrayMap<const char*, CMolInfo::TBiomol, PCase_CStr> TCStringBiomolPairsMap |
Definition at line 153 of file molinfo_fieldtype.cpp.
◆ TCStringCompletenessPairsMap
| typedef CStaticPairArrayMap<const char*, CMolInfo::TCompleteness, PCase_CStr> TCStringCompletenessPairsMap |
Definition at line 256 of file molinfo_fieldtype.cpp.
◆ TCStringMolPairsMap
| typedef CStaticPairArrayMap<const char*, CSeq_inst::TMol, PCase_CStr> TCStringMolPairsMap |
Definition at line 298 of file molinfo_fieldtype.cpp.
◆ TCStringReprPairsMap
| typedef CStaticPairArrayMap<const char*, CSeq_inst::TRepr, PCase_CStr> TCStringReprPairsMap |
Definition at line 424 of file molinfo_fieldtype.cpp.
◆ TCStringStrandPairsMap
| typedef CStaticPairArrayMap<const char*, CSeq_inst::TStrand, PCase_CStr> TCStringStrandPairsMap |
Definition at line 380 of file molinfo_fieldtype.cpp.
◆ TCStringTechPairsMap
| typedef CStaticPairArrayMap<const char*, CMolInfo::TBiomol, PCase_CStr> TCStringTechPairsMap |
Definition at line 209 of file molinfo_fieldtype.cpp.
◆ TCStringTopologyPairsMap
| typedef CStaticPairArrayMap<const char*, CSeq_inst::TTopology, PCase_CStr> TCStringTopologyPairsMap |
Definition at line 339 of file molinfo_fieldtype.cpp.
Function Documentation
◆ DEFINE_STATIC_ARRAY_MAP() [1/7]
| DEFINE_STATIC_ARRAY_MAP | ( | TCStringBiomolPairsMap | , |
| k_biomol_names | , | ||
| s_map_biomol_names | |||
| ) |
◆ DEFINE_STATIC_ARRAY_MAP() [2/7]
| DEFINE_STATIC_ARRAY_MAP | ( | TCStringCompletenessPairsMap | , |
| k_completeness_names | , | ||
| s_map_completeness_names | |||
| ) |
◆ DEFINE_STATIC_ARRAY_MAP() [3/7]
| DEFINE_STATIC_ARRAY_MAP | ( | TCStringMolPairsMap | , |
| k_mol_names | , | ||
| s_map_mol_names | |||
| ) |
◆ DEFINE_STATIC_ARRAY_MAP() [4/7]
| DEFINE_STATIC_ARRAY_MAP | ( | TCStringReprPairsMap | , |
| k_repr_names | , | ||
| s_map_repr_names | |||
| ) |
◆ DEFINE_STATIC_ARRAY_MAP() [5/7]
| DEFINE_STATIC_ARRAY_MAP | ( | TCStringStrandPairsMap | , |
| k_strand_names | , | ||
| s_map_strand_names | |||
| ) |
◆ DEFINE_STATIC_ARRAY_MAP() [6/7]
| DEFINE_STATIC_ARRAY_MAP | ( | TCStringTechPairsMap | , |
| k_tech_names | , | ||
| s_map_tech_names | |||
| ) |
◆ DEFINE_STATIC_ARRAY_MAP() [7/7]
| DEFINE_STATIC_ARRAY_MAP | ( | TCStringTopologyPairsMap | , |
| k_topology_names | , | ||
| s_map_topology_names | |||
| ) |
◆ USING_SCOPE()
| USING_SCOPE | ( | objects | ) |
Variable Documentation
◆ s_map_biomol_names
|
static |
Initial value:
=
{
{ " ", CMolInfo::eBiomol_unknown },
{ "cRNA", CMolInfo::eBiomol_cRNA },
{ "genomic", CMolInfo::eBiomol_genomic },
{ "genomic mRNA", CMolInfo::eBiomol_genomic_mRNA },
{ "mRNA", CMolInfo::eBiomol_mRNA },
{ "ncRNA", CMolInfo::eBiomol_ncRNA },
{ "other", CMolInfo::eBiomol_other },
{ "other-genetic", CMolInfo::eBiomol_other_genetic },
{ "peptide", CMolInfo::eBiomol_peptide },
{ "precursor RNA", CMolInfo::eBiomol_pre_RNA },
{ "rRNA", CMolInfo::eBiomol_rRNA },
{ "scRNA", CMolInfo::eBiomol_scRNA },
{ "snRNA", CMolInfo::eBiomol_snRNA },
{ "snoRNA", CMolInfo::eBiomol_snoRNA },
{ "tRNA", CMolInfo::eBiomol_tRNA },
{ "tmRNA", CMolInfo::eBiomol_tmRNA },
{ "transcribed_RNA", CMolInfo::eBiomol_transcribed_RNA }
}
Definition at line 132 of file molinfo_fieldtype.cpp.
◆ s_map_completeness_names
|
static |
Initial value:
=
{
{ " ", CMolInfo::eCompleteness_unknown },
{ "complete", CMolInfo::eCompleteness_complete },
{ "has left", CMolInfo::eCompleteness_has_left },
{ "has right", CMolInfo::eCompleteness_has_right },
{ "no ends", CMolInfo::eCompleteness_no_ends },
{ "no left", CMolInfo::eCompleteness_no_left },
{ "no right", CMolInfo::eCompleteness_no_right },
{ "other", CMolInfo::eCompleteness_other },
{ "partial", CMolInfo::eCompleteness_partial }
}
Definition at line 242 of file molinfo_fieldtype.cpp.
◆ s_map_mol_names
|
static |
Initial value:
=
{
{ " ", CSeq_inst::eMol_not_set },
{ "DNA", CSeq_inst::eMol_dna },
{ "RNA", CSeq_inst::eMol_rna },
{ "nucleotide", CSeq_inst::eMol_na },
{ "other", CSeq_inst::eMol_other },
{ "protein", CSeq_inst::eMol_aa }
}
Definition at line 287 of file molinfo_fieldtype.cpp.
◆ s_map_repr_names
|
static |
Initial value:
=
{
{ " ", CSeq_inst::eRepr_not_set },
{ "consensus", CSeq_inst::eRepr_consen },
{ "constructed", CSeq_inst::eRepr_const },
{ "delta", CSeq_inst::eRepr_delta },
{ "ordered map", CSeq_inst::eRepr_map },
{ "other", CSeq_inst::eRepr_other },
{ "raw", CSeq_inst::eRepr_raw },
{ "reference to another", CSeq_inst::eRepr_ref },
{ "segmented", CSeq_inst::eRepr_seg },
{ "virtual", CSeq_inst::eRepr_virtual }
}
Definition at line 410 of file molinfo_fieldtype.cpp.
◆ s_map_strand_names
|
static |
Initial value:
=
{
{ " ", CSeq_inst::eStrand_not_set },
{ "double", CSeq_inst::eStrand_ds },
{ "mixed", CSeq_inst::eStrand_mixed },
{ "other", CSeq_inst::eStrand_other },
{ "single", CSeq_inst::eStrand_ss }
}
Definition at line 370 of file molinfo_fieldtype.cpp.
◆ s_map_tech_names
|
static |
Initial value:
=
{
{ " ", CMolInfo::eTech_unknown },
{ "EST", CMolInfo::eTech_est },
{ "FLI_cDNA", CMolInfo::eTech_fli_cdna },
{ "HTC", CMolInfo::eTech_htc },
{ "HTGS 0", CMolInfo::eTech_htgs_0 },
{ "HTGS 1", CMolInfo::eTech_htgs_1 },
{ "HTGS 2", CMolInfo::eTech_htgs_2 },
{ "HTGS 3", CMolInfo::eTech_htgs_3 },
{ "STS", CMolInfo::eTech_sts },
{ "TSA", CMolInfo::eTech_tsa },
{ "WGS", CMolInfo::eTech_wgs },
{ "both", CMolInfo::eTech_both },
{ "composite-WGS-HTGS", CMolInfo::eTech_composite_wgs_htgs },
{ "concept-trans", CMolInfo::eTech_concept_trans },
{ "concept-trans-A", CMolInfo::eTech_concept_trans_a },
{ "derived", CMolInfo::eTech_derived },
{ "genetic map", CMolInfo::eTech_genemap },
{ "physical map", CMolInfo::eTech_physmap },
{ "seq-pept", CMolInfo::eTech_seq_pept },
{ "seq-pept-homol", CMolInfo::eTech_seq_pept_homol },
{ "seq-pept-overlap", CMolInfo::eTech_seq_pept_overlap },
{ "standard", CMolInfo::eTech_standard },
{ "survey", CMolInfo::eTech_survey }
}
Definition at line 182 of file molinfo_fieldtype.cpp.
◆ s_map_topology_names
|
static |
Initial value:
=
{
{ " ", CSeq_inst::eTopology_not_set },
{ "circular", CSeq_inst::eTopology_circular },
{ "linear", CSeq_inst::eTopology_linear },
{ "other", CSeq_inst::eTopology_other },
{ "tandem", CSeq_inst::eTopology_tandem }
}
Definition at line 329 of file molinfo_fieldtype.cpp.
