#include <ncbi_pch.hpp>#include <algo/blast/api/blast_aux.hpp>#include <algo/blast/api/msa_pssm_input.hpp>#include "ensure_enough_corelib.hpp"#include <corelib/test_boost.hpp>
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Functions | |
| BOOST_AUTO_TEST_CASE (QueryNotFoundInMsa) | |
| BOOST_AUTO_TEST_CASE (AllUpperCaseMsa) | |
| BOOST_AUTO_TEST_CASE (AllUpperCaseMsa_WithQuery) | |
| BOOST_AUTO_TEST_CASE (MsaWithLowerCaseResidues) | |
Function Documentation
◆ BOOST_AUTO_TEST_CASE() [1/4]
| BOOST_AUTO_TEST_CASE | ( | AllUpperCaseMsa | ) |
Definition at line 66 of file msa2pssm_unit_test.cpp.
References AMINOACID_TO_NCBISTDAA, PSIMsa::data, PSIMsa::dimensions, CPsiBlastInputClustalW::GetData(), i, in(), PSIMsaCell::letter, PSIMsaDimensions::num_seqs, CPsiBlastInputClustalW::Process(), PSIBlastOptionsNew(), and PSIMsaDimensions::query_length.
◆ BOOST_AUTO_TEST_CASE() [2/4]
| BOOST_AUTO_TEST_CASE | ( | AllUpperCaseMsa_WithQuery | ) |
Definition at line 89 of file msa2pssm_unit_test.cpp.
References AMINOACID_TO_NCBISTDAA, PSIMsa::data, PSIMsa::dimensions, CPsiBlastInputClustalW::GetData(), CPsiBlastInputClustalW::GetQueryLength(), i, in(), int, ITERATE, PSIMsaCell::letter, PSIMsaDimensions::num_seqs, CPsiBlastInputClustalW::Process(), PSIBlastOptionsNew(), query, and PSIMsaDimensions::query_length.
◆ BOOST_AUTO_TEST_CASE() [3/4]
| BOOST_AUTO_TEST_CASE | ( | MsaWithLowerCaseResidues | ) |
Definition at line 120 of file msa2pssm_unit_test.cpp.
References AMINOACID_TO_NCBISTDAA, BLAST_DEFAULT_MATRIX, PSIMsa::data, PSIMsa::dimensions, FALSE, CPsiBlastInputClustalW::GetData(), CRange_Base::GetFrom(), CPsiBlastInputClustalW::GetMatrixName(), CPsiBlastInputClustalW::GetQueryLength(), CRange_Base::GetTo(), COpenRange< Position >::GetToOpen(), i, in(), PSIMsaCell::is_aligned, PSIMsaCell::letter, PSIMsaDimensions::num_seqs, CPsiBlastInputClustalW::Process(), PSIBlastOptionsNew(), PSIMsaDimensions::query_length, and TRUE.
◆ BOOST_AUTO_TEST_CASE() [4/4]
| BOOST_AUTO_TEST_CASE | ( | QueryNotFoundInMsa | ) |
Definition at line 48 of file msa2pssm_unit_test.cpp.
References in(), kQuery, and PSIBlastOptionsNew().
