NCBI C++ ToolKit
Classes | Typedefs | Functions
msa_tool_job.cpp File Reference
#include <ncbi_pch.hpp>
#include <corelib/ncbifile.hpp>
#include <corelib/ncbiexec.hpp>
#include <objmgr/seq_vector.hpp>
#include <objmgr/util/sequence.hpp>
#include <objtools/readers/fasta.hpp>
#include <serial/iterator.hpp>
#include <objects/seqalign/Seq_align.hpp>
#include <objects/seq/Annotdesc.hpp>
#include <algo/phy_tree/dist_methods.hpp>
#include <gui/objutils/label.hpp>
#include <objects/gbproj/AbstractProjectItem.hpp>
#include <gui/packages/pkg_alignment/msa_tool_job.hpp>
#include <gui/widgets/wx/wx_utils.hpp>
#include <gui/widgets/wx/async_call.hpp>
#include <wx/filename.h>
#include <wx/utils.h>
#include <wx/msgdlg.h>
+ Include dependency graph for msa_tool_job.cpp:

Go to the source code of this file.

Go to the SVN repository for this file.

Classes

struct  STreeNodeMapper
 

Typedefs

typedef map< CSeq_id_Handle, boolTSeqTypeMap
 
typedef CMSAToolJob::TLocPair TLocPair
 
typedef CMSAToolJob::TIdMap TIdMap
 

Functions

 USING_SCOPE (objects)
 
static void s_DumpSequences_wRange (CNcbiOstream &ostr, TConstScopedObjects &locations, TSeqTypeMap &seq_types, CMappingRanges &ranges, map< string, TLocPair > &idmap)
 

Typedef Documentation

◆ TIdMap

Definition at line 70 of file msa_tool_job.cpp.

◆ TLocPair

Definition at line 69 of file msa_tool_job.cpp.

◆ TSeqTypeMap

Definition at line 68 of file msa_tool_job.cpp.

Function Documentation

◆ s_DumpSequences_wRange()

static void s_DumpSequences_wRange ( CNcbiOstream ostr,
TConstScopedObjects locations,
TSeqTypeMap seq_types,
CMappingRanges ranges,
map< string, TLocPair > &  idmap 
)
static

◆ USING_SCOPE()

USING_SCOPE ( objects  )
Modified on Mon Mar 04 05:12:37 2024 by modify_doxy.py rev. 669887