objects Namespace Reference

Namespaces
	edit
	feature

Classes
class	CFixSuspectProductName

Functions
template<typename _M >
void	VisitAllBioseqs (objects::CSeq_entry &entry, _M &&m)
template<typename _M >
void	VisitAllBioseqs (const objects::CSeq_entry &entry, _M &&m)
template<typename _M >
void	VisitAllSeqDesc (objects::CSeq_entry &entry, bool skip_nucprot, _M m)
template<typename _M >
void	VisitAllSeqDesc (objects::CSeq_entry &entry, _M m)
template<typename _Mset , typename _Mseq >
void	VisitAllSetandSeq (objects::CSeq_entry &entry, _Mset mset, _Mseq mseq)
template<typename _M >
void	VisitAllFeatures (objects::CSeq_entry_EditHandle &entry_h, _M m)
template<typename _Method >
void	VisitAllFeatures (CBioseq &bioseq, _Method m)
template<typename _Method , typename _BioseqFilter >
void	VisitAllFeatures (objects::CSeq_entry &entry, _BioseqFilter bf, _Method m)
template<typename Method >
void	VisitAllFeatures (objects::CBioseq::TAnnot &annots, Method method)
template<typename Method >
void	VisitAllFeatures (objects::CSeq_entry &entry, Method method)

Function Documentation

VisitAllBioseqs() [1/2]

template<typename _M >

void objects::VisitAllBioseqs	(	const objects::CSeq_entry &	entry,
		_M &&	m
	)

Definition at line 31 of file visitors.hpp.

References VisitAllBioseqs().

VisitAllBioseqs() [2/2]

template<typename _M >

void objects::VisitAllBioseqs	(	objects::CSeq_entry &	entry,
		_M &&	m
	)

Definition at line 14 of file visitors.hpp.

Referenced by CTable2AsnContext::ApplyAccession(), CFeatureTableReader::ChangeDeltaProteinToRawProtein(), g_ApplyMods(), CTable2AsnContext::MakeGenomeCenterId(), CTbl2AsnApp::ProcessOneEntry(), CTbl2AsnApp::ProcessSingleEntry(), VisitAllBioseqs(), and VisitAllFeatures().

VisitAllFeatures() [1/5]

template<typename _Method >

void objects::VisitAllFeatures	(	CBioseq &	bioseq,
		_Method	m
	)

Definition at line 129 of file visitors.hpp.

References CBioseq_Base::GetAnnot(), CBioseq_Base::IsSetAnnot(), and CBioseq_Base::SetAnnot().

VisitAllFeatures() [2/5]

template<typename Method >

void objects::VisitAllFeatures	(	objects::CBioseq::TAnnot &	annots,
		Method	method
	)

Definition at line 167 of file visitors.hpp.

VisitAllFeatures() [3/5]

template<typename _Method , typename _BioseqFilter >

void objects::VisitAllFeatures	(	objects::CSeq_entry &	entry,
		_BioseqFilter	bf,
		_Method	m
	)

Definition at line 148 of file visitors.hpp.

References VisitAllBioseqs(), and VisitAllFeatures().

VisitAllFeatures() [4/5]

template<typename Method >

void objects::VisitAllFeatures	(	objects::CSeq_entry &	entry,
		Method	method
	)

Definition at line 184 of file visitors.hpp.

References VisitAllFeatures().

VisitAllFeatures() [5/5]

template<typename _M >

void objects::VisitAllFeatures	(	objects::CSeq_entry_EditHandle &	entry_h,
		_M	m
	)

Definition at line 120 of file visitors.hpp.

Referenced by objects::CFixSuspectProductName::FixSuspectProductNames(), CTbl2AsnApp::ProcessOneEntry(), CTbl2AsnApp::ProcessSingleEntry(), CTable2AsnValidator::UpdateECNumbers(), and VisitAllFeatures().

VisitAllSeqDesc() [1/2]

template<typename _M >

void objects::VisitAllSeqDesc	(	objects::CSeq_entry &	entry,
		_M	m
	)

Definition at line 76 of file visitors.hpp.

References VisitAllSeqDesc().

VisitAllSeqDesc() [2/2]

template<typename _M >

void objects::VisitAllSeqDesc	(	objects::CSeq_entry &	entry,
		bool	skip_nucprot,
		_M	m
	)

Definition at line 48 of file visitors.hpp.

References CBioseq_set_Base::eClass_nuc_prot.

Referenced by CTable2AsnStructuredCommentsReader::ProcessComments(), and VisitAllSeqDesc().

VisitAllSetandSeq()

template<typename _Mset , typename _Mseq >

void objects::VisitAllSetandSeq	(	objects::CSeq_entry &	entry,
		_Mset	mset,
		_Mseq	mseq
	)

Definition at line 100 of file visitors.hpp.

Referenced by CTable2AsnContext::ApplyComments(), and CTable2AsnContext::CorrectCollectionDates().