ncbi_server_info.c File Reference

#include "ncbi_ansi_ext.h"
#include "ncbi_assert.h"
#include "ncbi_server_infop.h"
#include "ncbi_socketp.h"
#include <ctype.h>
#include <stdio.h>
#include <stdlib.h>

Include dependency graph for ncbi_server_info.c:

Go to the source code of this file.

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Classes
struct	SSERV_Ops
struct	SSERV_Attr

Macros
#define	fabs(v)   ((v) < 0.0 ? -(v) : (v))
#define	MAX_IP_ADDR_LEN   80 /*IPv6 friendly*/
#define	SERV_VHOSTABLE   (/*fSERV_Ncbid |*/ fSERV_Http | fSERV_Standalone)

Functions
static const SSERV_Attr *	s_GetAttrByType (ESERV_Type type)
static const SSERV_Attr *	s_GetAttrByTag (const char *tag)
const char *	SERV_TypeStr (ESERV_Type type)
const char *	SERV_ReadType (const char *str, ESERV_Type *type)
char *	SERV_WriteInfo (const SSERV_Info *info)
SSERV_Info *	SERV_ReadInfoEx (const char *str, const char *name, int lazy)
SSERV_Info *	SERV_ReadInfo (const char *str)
SSERV_Info *	SERV_CopyInfoEx (const SSERV_Info *orig, const char *name)
SSERV_Info *	SERV_CopyInfo (const SSERV_Info *orig)
const char *	SERV_NameOfInfo (const SSERV_Info *info)
size_t	SERV_SizeOfInfo (const SSERV_Info *info)
int	SERV_EqualInfo (const SSERV_Info *i1, const SSERV_Info *i2)
const char *	SERV_HostOfInfo (const SSERV_Info *info)
TNCBI_IPv6Addr	SERV_AddrOfInfo (const SSERV_Info *info)
static char *	s_Ncbid_Write (size_t reserve, const USERV_Info *u)
static SSERV_Info *	s_Ncbid_Read (const char **str, size_t add)
static size_t	s_Ncbid_SizeOf (const USERV_Info *u)
static int	s_Ncbid_Equal (const USERV_Info *u1, const USERV_Info *u2)
SSERV_Info *	SERV_CreateNcbidInfoEx (unsigned int host, unsigned short port, const char *args, size_t add)
SSERV_Info *	SERV_CreateNcbidInfo (unsigned int host, unsigned short port, const char *args)
static char *	s_Standalone_Write (size_t reserve, const USERV_Info *u)
static SSERV_Info *	s_Standalone_Read (const char **str, size_t add)
static size_t	s_Standalone_SizeOf (const USERV_Info *u)
SSERV_Info *	SERV_CreateStandaloneInfoEx (unsigned int host, unsigned short port, size_t add)
SSERV_Info *	SERV_CreateStandaloneInfo (unsigned int host, unsigned short port)
static char *	s_Http_Write (size_t reserve, const USERV_Info *u)
static SSERV_Info *	s_HttpAny_Read (ESERV_Type type, const char **str, size_t add)
static SSERV_Info *	s_HttpGet_Read (const char **str, size_t add)
static SSERV_Info *	s_HttpPost_Read (const char **str, size_t add)
static SSERV_Info *	s_Http_Read (const char **str, size_t add)
static size_t	s_Http_SizeOf (const USERV_Info *u)
static int	s_Http_Equal (const USERV_Info *u1, const USERV_Info *u2)
SSERV_Info *	SERV_CreateHttpInfoEx (ESERV_Type type, unsigned int host, unsigned short port, const char *path, const char *args, size_t add)
SSERV_Info *	SERV_CreateHttpInfo (ESERV_Type type, unsigned int host, unsigned short port, const char *path, const char *args)
static char *	s_Firewall_Write (size_t reserve, const USERV_Info *u)
static SSERV_Info *	s_Firewall_Read (const char **str, size_t add)
static size_t	s_Firewall_SizeOf (const USERV_Info *u)
static int	s_Firewall_Equal (const USERV_Info *u1, const USERV_Info *u2)
SSERV_Info *	SERV_CreateFirewallInfoEx (unsigned int host, unsigned short port, ESERV_Type type, size_t add)
SSERV_Info *	SERV_CreateFirewallInfo (unsigned int host, unsigned short port, ESERV_Type type)
static char *	s_Dns_Write (size_t reserve, const USERV_Info *u)
static SSERV_Info *	s_Dns_Read (const char **str, size_t add)
static size_t	s_Dns_SizeOf (const USERV_Info *u)
SSERV_Info *	SERV_CreateDnsInfoEx (unsigned int host, size_t add)
SSERV_Info *	SERV_CreateDnsInfo (unsigned int host)

Variables
static const char	kRegularInter [] = "RegularInter"
static const char	kBlastInter [] = "BlastInter"
static const char	kRegular [] = "Regular"
static const char	kBlast [] = "Blast"
struct {
const char *   tag
size_t   len
ESERV_Algo   algo
ESERV_Site   site
}	kFlags []
static const char	kNCBID [] = "NCBID"
static const char	kSTANDALONE [] = "STANDALONE"
static const char	kHTTP_GET [] = "HTTP_GET"
static const char	kHTTP_POST [] = "HTTP_POST"
static const char	kHTTP [] = "HTTP"
static const char	kFIREWALL [] = "FIREWALL"
static const char	kDNS [] = "DNS"
static const SSERV_Attr	kSERV_Attr []

Macro Definition Documentation

fabs

#define fabs

(

v

)

((v) < 0.0 ? -(v) : (v))

Definition at line 44 of file ncbi_server_info.c.

MAX_IP_ADDR_LEN

#define MAX_IP_ADDR_LEN   80 /*IPv6 friendly*/

Definition at line 46 of file ncbi_server_info.c.

SERV_VHOSTABLE

#define SERV_VHOSTABLE   (/*fSERV_Ncbid |*/ fSERV_Http | fSERV_Standalone)

Definition at line 48 of file ncbi_server_info.c.

Function Documentation

s_Dns_Read()

static SSERV_Info* s_Dns_Read ( const char **  str, size_t  add  )

static

Definition at line 1081 of file ncbi_server_info.c.

References SERV_CreateDnsInfoEx().

s_Dns_SizeOf()

static size_t s_Dns_SizeOf ( const USERV_Info *  u )

static

Definition at line 1087 of file ncbi_server_info.c.

References USERV_Info::dns.

s_Dns_Write()

static char* s_Dns_Write ( size_t  reserve, const USERV_Info *  u  )

static

Definition at line 1070 of file ncbi_server_info.c.

References str().

s_Firewall_Equal()

static int s_Firewall_Equal ( const USERV_Info *  u1, const USERV_Info *  u2  )

static

Definition at line 1022 of file ncbi_server_info.c.

References USERV_Info::firewall, and SSERV_FirewallInfo::type.

s_Firewall_Read()

static SSERV_Info* s_Firewall_Read ( const char **  str, size_t  add  )

static

Definition at line 1004 of file ncbi_server_info.c.

References SERV_CreateFirewallInfoEx(), SERV_ReadType(), str(), and type.

s_Firewall_SizeOf()

static size_t s_Firewall_SizeOf ( const USERV_Info *  u )

static

Definition at line 1016 of file ncbi_server_info.c.

References USERV_Info::firewall.

s_Firewall_Write()

static char* s_Firewall_Write ( size_t  reserve, const USERV_Info *  u  )

static

Definition at line 992 of file ncbi_server_info.c.

References USERV_Info::firewall, SERV_TypeStr(), str(), and SSERV_FirewallInfo::type.

s_GetAttrByTag()

static const SSERV_Attr * s_GetAttrByTag ( const char *  tag )

static

Definition at line 1188 of file ncbi_server_info.c.

References i, isspace(), kSERV_Attr, SSERV_Attr::len, len, strncasecmp, and tag.

Referenced by SERV_ReadType().

s_GetAttrByType()

static const SSERV_Attr * s_GetAttrByType ( ESERV_Type  type )

static

Definition at line 1177 of file ncbi_server_info.c.

References i, and kSERV_Attr.

Referenced by SERV_EqualInfo(), SERV_HostOfInfo(), SERV_ReadInfoEx(), SERV_SizeOfInfo(), SERV_TypeStr(), and SERV_WriteInfo().

s_Http_Equal()

static int s_Http_Equal ( const USERV_Info *  u1, const USERV_Info *  u2  )

static

Definition at line 920 of file ncbi_server_info.c.

References USERV_Info::http, SERV_HTTP_ARGS, SERV_HTTP_PATH, and util::strcmp().

s_Http_Read()

static SSERV_Info* s_Http_Read ( const char **  str, size_t  add  )

static

Definition at line 906 of file ncbi_server_info.c.

References fSERV_Http, s_HttpAny_Read(), and str().

s_Http_SizeOf()

static size_t s_Http_SizeOf ( const USERV_Info *  u )

static

Definition at line 912 of file ncbi_server_info.c.

References USERV_Info::http, SERV_HTTP_ARGS, and SERV_HTTP_PATH.

s_Http_Write()

static char* s_Http_Write ( size_t  reserve, const USERV_Info *  u  )

static

Definition at line 849 of file ncbi_server_info.c.

References USERV_Info::http, info, n, SERV_HTTP_ARGS, SERV_HTTP_PATH, and str().

s_HttpAny_Read()

static SSERV_Info* s_HttpAny_Read ( ESERV_Type  type, const char **  str, size_t  add  )

static

Definition at line 864 of file ncbi_server_info.c.

References assert, info, isspace(), len, SERV_CreateHttpInfoEx(), str(), and strndup.

Referenced by s_Http_Read(), s_HttpGet_Read(), and s_HttpPost_Read().

s_HttpGet_Read()

static SSERV_Info* s_HttpGet_Read ( const char **  str, size_t  add  )

static

Definition at line 894 of file ncbi_server_info.c.

References fSERV_HttpGet, s_HttpAny_Read(), and str().

s_HttpPost_Read()

static SSERV_Info* s_HttpPost_Read ( const char **  str, size_t  add  )

static

Definition at line 900 of file ncbi_server_info.c.

References fSERV_HttpPost, s_HttpAny_Read(), and str().

s_Ncbid_Equal()

static int s_Ncbid_Equal ( const USERV_Info *  u1, const USERV_Info *  u2  )

static

Definition at line 729 of file ncbi_server_info.c.

References USERV_Info::ncbid, SERV_NCBID_ARGS, and util::strcmp().

s_Ncbid_Read()

static SSERV_Info* s_Ncbid_Read ( const char **  str, size_t  add  )

static

Definition at line 696 of file ncbi_server_info.c.

References assert, info, isspace(), len, SERV_CreateNcbidInfoEx(), str(), and strndup.

s_Ncbid_SizeOf()

static size_t s_Ncbid_SizeOf ( const USERV_Info *  u )

static

Definition at line 723 of file ncbi_server_info.c.

References USERV_Info::ncbid, and SERV_NCBID_ARGS.

s_Ncbid_Write()

static char* s_Ncbid_Write ( size_t  reserve, const USERV_Info *  u  )

static

Definition at line 684 of file ncbi_server_info.c.

References info, USERV_Info::ncbid, SERV_NCBID_ARGS, and str().

s_Standalone_Read()

static SSERV_Info* s_Standalone_Read ( const char **  str, size_t  add  )

static

Definition at line 798 of file ncbi_server_info.c.

References SERV_CreateStandaloneInfoEx().

s_Standalone_SizeOf()

static size_t s_Standalone_SizeOf ( const USERV_Info *  u )

static

Definition at line 804 of file ncbi_server_info.c.

References USERV_Info::standalone.

s_Standalone_Write()

static char* s_Standalone_Write ( size_t  reserve, const USERV_Info *  u  )

static

Definition at line 787 of file ncbi_server_info.c.

References str().

SERV_AddrOfInfo()

TNCBI_IPv6Addr SERV_AddrOfInfo

(

const SSERV_Info *

info

)

Definition at line 670 of file ncbi_server_info.c.

References info, NcbiIPv4ToIPv6(), and NcbiIsEmptyIPv6().

Referenced by SERV_GetServers().

SERV_CopyInfoEx()

SSERV_Info* SERV_CopyInfoEx	(	const SSERV_Info *	orig,
		const char *	name
	)

Definition at line 593 of file ncbi_server_info.c.

References fSERV_Dns, info, orig, SERV_SizeOfInfo(), and ncbi::grid::netcache::search::fields::size.

Referenced by DBLB_GetServer(), dns_a(), dns_srv(), s_GetNextInfo(), SERV_CopyInfo(), x_Finalize(), x_Open(), and x_UpdateHost().

SERV_CreateDnsInfoEx()

SSERV_Info* SERV_CreateDnsInfoEx	(	unsigned int	host,
		size_t	add
	)

Definition at line 1093 of file ncbi_server_info.c.

References eENCOD_None, eMIME_T_Undefined, eMIME_Undefined, fSERV_Dns, fSERV_Local, info, and SERV_DEFAULT_ALGO.

Referenced by s_Dns_Read(), and SERV_CreateDnsInfo().

SERV_CreateFirewallInfoEx()

SSERV_Info* SERV_CreateFirewallInfoEx	(	unsigned int	host,
		unsigned short	port,
		ESERV_Type	type,
		size_t	add
	)

Definition at line 1028 of file ncbi_server_info.c.

References eENCOD_None, eMIME_T_Undefined, eMIME_Undefined, fSERV_Firewall, fSERV_Local, info, SERV_DEFAULT_ALGO, and type.

Referenced by s_Firewall_Read(), and SERV_CreateFirewallInfo().

SERV_CreateHttpInfoEx()

SSERV_Info* SERV_CreateHttpInfoEx	(	ESERV_Type	type,
		unsigned int	host,
		unsigned short	port,
		const char *	path,
		const char *	args,
		size_t	add
	)

Definition at line 928 of file ncbi_server_info.c.

References eENCOD_None, eMIME_T_Undefined, eMIME_Undefined, fSERV_Http, fSERV_Local, info, SERV_DEFAULT_ALGO, SERV_HTTP_ARGS, SERV_HTTP_PATH, and type.

Referenced by s_HttpAny_Read(), and SERV_CreateHttpInfo().

SERV_CreateNcbidInfoEx()

SSERV_Info* SERV_CreateNcbidInfoEx	(	unsigned int	host,
		unsigned short	port,
		const char *	args,
		size_t	add
	)

Definition at line 736 of file ncbi_server_info.c.

References eENCOD_None, eMIME_T_Undefined, eMIME_Undefined, fSERV_Local, fSERV_Ncbid, info, SERV_DEFAULT_ALGO, SERV_NCBID_ARGS, and util::strcmp().

Referenced by s_Ncbid_Read(), and SERV_CreateNcbidInfo().

SERV_CreateStandaloneInfoEx()

SSERV_Info* SERV_CreateStandaloneInfoEx	(	unsigned int	host,
		unsigned short	port,
		size_t	add
	)

Definition at line 810 of file ncbi_server_info.c.

References eENCOD_None, eMIME_T_Undefined, eMIME_Undefined, fSERV_Local, fSERV_Standalone, info, and SERV_DEFAULT_ALGO.

Referenced by s_Standalone_Read(), and SERV_CreateStandaloneInfo().

SERV_HostOfInfo()

const char* SERV_HostOfInfo

(

const SSERV_Info *

info

)

Definition at line 661 of file ncbi_server_info.c.

References info, SSERV_Attr::ops, s_GetAttrByType(), and SSERV_Ops::SizeOf.

Referenced by x_HostOfInfo(), and x_SetHostPort().

SERV_NameOfInfo()

const char* SERV_NameOfInfo

(

const SSERV_Info *

info

)

Definition at line 620 of file ncbi_server_info.c.

References fSERV_Dns, info, and SERV_SizeOfInfo().

Referenced by DBLB_GetServer(), CDBLB_ServiceMapper::GetServerOptions(), LB_Select(), s_AddServerInfo(), s_AddSkipInfo(), s_GetNextInfo(), s_ParseResponse(), s_RemoveServerInfo(), s_Reset(), SERV_CurrentName(), SERV_Print(), x_AddInfo(), x_ConsistencyCheck(), x_Finalize(), x_Open(), x_UpdateHost(), and x_UpdatePort().

SERV_ReadInfoEx()

SSERV_Info* SERV_ReadInfoEx	(	const char *	str,
		const char *	name,
		int	lazy
	)

Definition at line 231 of file ncbi_server_info.c.

References algo, assert, CONN_HOST_LEN, CONN_PORT_HTTP, CONN_PORT_HTTPS, eSERV_Blast, eSERV_Regular, fabs, fSERV_Dns, fSERV_Http, fSERV_Interzone, fSERV_Local, fSERV_Ncbid, fSERV_Private, fSERV_Secure, fSERV_Standalone, fSERV_Stateful, i, info, ispunct(), isspace(), kFlags, len, MIME_ParseContentTypeEx(), n, NCBI_simple_atof(), NcbiIPToAddr(), NcbiIPv4ToIPv6(), NcbiIPv6ToIPv4(), NcbiIsIPv4(), SSERV_Attr::ops, SSERV_Ops::Read, s_GetAttrByType(), SERV_MAXIMAL_BONUS, SERV_MAXIMAL_RATE, SERV_MINIMAL_BONUS, SERV_MINIMAL_RATE, SERV_ReadType(), SERV_SizeOfInfo(), SERV_VHOSTABLE, site, SSERV_Ops::SizeOf, SOCK_HostToNetLong(), SOCK_isip(), SOCK_isipEx(), SOCK_StringToHostPortEx(), str(), strcasecmp, strncasecmp, strncpy0(), strndup, t, tag, tmp, toupper(), SSERV_Attr::type, type, and verify.

Referenced by s_LoadSingleService(), s_ParseResponse(), s_Resolve(), s_Update(), SERV_ReadInfo(), and SERV_Update().

Variable Documentation

algo

ESERV_Algo algo

Definition at line 105 of file ncbi_server_info.c.

Referenced by CClusterDBSource::CClusterDBSource(), CRawSeqDBSource::CRawSeqDBSource(), CSeqDBImpl::GetAvailableMaskAlgorithmDescriptions(), CSeqDBGiMask::GetAvailableMaskAlgorithms(), CSeqDBImpl::GetMaskAlgorithmId(), LBSM_CalculateStatus(), s_ReadRanges(), SERV_ReadInfoEx(), CPluginInfo::SetAlgoCommand(), CBlastNucleotideOptionsHandle::SetGapExtnAlgorithm(), CBlastNucleotideOptionsHandle::SetGapTracebackAlgorithm(), and CConvert2BlastMaskApplication::x_GetWriter().

kBlast

const char kBlast[] = "Blast"

static

Definition at line 100 of file ncbi_server_info.c.

kBlastInter

const char kBlastInter[] = "BlastInter"

static

Definition at line 98 of file ncbi_server_info.c.

kDNS

const char kDNS[] = "DNS"

static

Definition at line 1136 of file ncbi_server_info.c.

kFIREWALL

const char kFIREWALL[] = "FIREWALL"

static

Definition at line 1135 of file ncbi_server_info.c.

struct { ... } kFlags[]

Initial value:

= {
    
    { kRegularInter, sizeof(kRegularInter)-1, eSERV_Regular, fSERV_Interzone },
    { kBlastInter,   sizeof(kBlastInter)-1,   eSERV_Blast,   fSERV_Interzone },
    { kRegular,      sizeof(kRegular)-1,      eSERV_Regular, (ESERV_Site) 0  },
    { kBlast,        sizeof(kBlast)-1,        eSERV_Blast,   (ESERV_Site) 0  }
}

Referenced by SERV_ReadInfoEx().

kHTTP

const char kHTTP[] = "HTTP"

static

Definition at line 1134 of file ncbi_server_info.c.

kHTTP_GET

const char kHTTP_GET[] = "HTTP_GET"

static

Definition at line 1132 of file ncbi_server_info.c.

kHTTP_POST

const char kHTTP_POST[] = "HTTP_POST"

static

Definition at line 1133 of file ncbi_server_info.c.

kNCBID

const char kNCBID[] = "NCBID"

static

Definition at line 1130 of file ncbi_server_info.c.

kRegular

const char kRegular[] = "Regular"

static

Definition at line 99 of file ncbi_server_info.c.

kRegularInter

const char kRegularInter[] = "RegularInter"

static

Definition at line 97 of file ncbi_server_info.c.

kSERV_Attr

const SSERV_Attr kSERV_Attr[]

static

Definition at line 1139 of file ncbi_server_info.c.

Referenced by s_GetAttrByTag(), and s_GetAttrByType().

kSTANDALONE

const char kSTANDALONE[] = "STANDALONE"

static

Definition at line 1131 of file ncbi_server_info.c.

len

size_t len

Definition at line 104 of file ncbi_server_info.c.

Referenced by s_GetAttrByTag(), s_HttpAny_Read(), s_Ncbid_Read(), and SERV_ReadInfoEx().

site

ESERV_Site site

Definition at line 106 of file ncbi_server_info.c.

Referenced by CMsvcPrjProjectContext::AdditionalLibraryDirectories(), CMsvcPrjProjectContext::AdditionalLinkerOptions(), CGuiRegistry::AddSite(), OpenGLRenderer::AddTransparentSphere(), CMsvcConfigure::AnalyzeDefines(), CheckSpliceSite(), CMsvcConfigure::Configure(), SMakeProjectT::ConvertLibDepends(), SMakeProjectT::ConvertLibDependsMacro(), CMsvcConfigure::CreateConfH(), CGuiRegistry::DeleteField(), SMakeProjectT::DoResolveDefs(), OpenGLRenderer::DrawAtom(), CEditObjectSeq_feat::GetEditCommand(), SUrl::GetRoot(), GetStringOfFeatQual(), CMsvcConfigure::InitializeFrom(), CMsvcPrjProjectContext::IsConfigEnabled(), CProjBulderApp::LoadDepGraph(), CRebase::MakeRSpec(), operator<<(), CMsvcConfigure::ProcessDefine(), CSpliceProblems::ReadAcceptorSpliceSite(), CSpliceProblems::ReadDonorSpliceSite(), s_AddSitesToAnnot(), s_CreateThirdPartyLibsInstallMakefile(), s_GetSiteName(), SERV_ReadInfoEx(), CGuiRegistry::Set(), StructureSet::SetCenter(), CGuiRegistry::SetField(), CGuiRegistry::SetFieldToValue(), CNewCleanup_imp::SiteFeatBC(), CMsvcSite::SLibChoice::SLibChoice(), CProjBulderApp::UpdateDepGraph(), CMsvcConfigure::WriteBuildVer(), CMsvcConfigure::WriteExtraDefines(), CFeatureItem::x_AddFTableSiteQuals(), CFeatureItem::x_AddQualsSite(), x_FindRSite(), and CFeatureItem::x_FormatNoteQuals().

tag

const char* tag

Definition at line 103 of file ncbi_server_info.c.

Referenced by CSeq_feat::AddDbxref(), AddGeneFeat(), AddIRDMiscFeature(), CClassTypeStrings::AddMember(), AddPIDToSeqId(), CObjectLoadingTask::AddProjectItemExtra(), CLinkUtils::AddSequenceLinks(), CReadBlastApp::addSimpleTab(), CProjectItem::AddTag(), CSrcTableDbxrefColumn::AddToBioSource(), CChoiceTypeStrings::AddVariant(), CBarcodeTool::ApplyDbxrefs(), asn1_get_sequence_of_cb(), asn1_get_tagged_int(), asn1_write_tagged_int(), CItemsInfo::AssignItemsTags(), CObjectIStreamAsnBinary::BeginChoiceVariant(), CObjectIStreamAsnBinary::BeginClassMember(), CObjectIStreamXml::BeginClassMember(), BOOST_AUTO_TEST_CASE(), cb_end_element(), cb_start_element(), ccm_auth_crypt(), chachapoly_crypt_and_tag(), CheckTags(), CLocalToGeneralId::CLocalToGeneralId(), CDriverManager::CreateDs(), CDriverManager::CreateDsFrom(), CSeqUtils::CreateLinkRow(), CSeqUtils::CreateSectionRow(), CSeqUtils::CreateTableRow(), CGlResMgr::CreateTexture(), DbxrefQualToDbtag(), CDbxrefPanel::DeleteTaxonRef(), compile_time_bits::Equal(), xml::impl::epimpl::event_end_element(), xml::impl::epimpl::event_start_element(), CBamDb::ExcludeAlignTag(), CExonSelectorApplication::ExtractExonsFromSAM(), CAlignFormatUtil::FillScanModeBlastDbInfo(), CItemsInfo::Find(), CObjectTypeInfo::FindMemberIndex(), CObjectTypeInfo::FindVariantIndex(), CFlatSubmitterSeqidQVal::Format(), CFlatXrefQVal::Format(), CGenbankFormatter::FormatDBSource(), CGenbankFormatter::FormatTSA(), CGenbankFormatter::FormatWGS(), CTMgr_DTrackId::FromTrackIdString(), fta_build_structured_comment(), fta_create_imgt_misc_feat(), fta_create_user_field(), fta_create_wgs_dbtag(), fta_fix_seq_id(), fta_get_str_user_field(), fta_get_user_field(), fta_orgref_has_taxid(), fta_parse_structured_comment(), fta_parse_tpa_tsa_block(), CNewCleanup_imp::GBQualSeqFeatBC(), get_embl_str_pub_id(), IScoringMethod::GetAlignmentTypeByTag(), GetDRlineDataSP(), CWGSDataLoader_Impl::GetFileInfoByGeneral(), CFileSubpanel::GetFilename(), CWGSDb_Impl::GetGeneralSeq_id(), CTSE_Handle::GetGenesWithLocus(), CTSE_Handle::GetGeneWithLocus(), CFeatGlyph::GetHTMLActiveAreas(), CSeq_featHandler::GetLabel(), CReadBlastApp::getLocusTag(), GetLocusTagForFeature(), CMemorySrcFileMap::GetMods(), getParam(), CCDSTranslationPanel::GetProductId(), NMItemData::GetPropertyFromInfo(), NSnp::GetRsid(), GetSeqTableFromSeqEntry(), GetSourceDbtag(), GetSPDescrTitle(), CProjectItemExtra::GetStr(), CItemsInfo::GetTagAndClass(), CGuiObjectInfoComponent::GetToolTip(), CObjectOStreamAsnBinary::GetUTF8StringTag(), CEditingActionBiosourceDbxref::GetValue(), CEditingActionFeatDbxref::GetValue(), CAlignGroup::GroupBySeqIds(), CAlignGroup::GroupBySequenceType(), CAlignGroup::GroupByStrand(), HasGeneIdXref(), CProjectItem::HasTag(), CBamDb::IncludeAlignTag(), CNamedParameterList::Is(), NSnp::IsSnp(), CDriverManager::MakeDs(), MakeStrDbtag(), CObjectTypeInfo::MatchPattern(), mbedtls_asn1_get_sequence_of_ncbicxx_2_28_3(), mbedtls_asn1_get_tag_ncbicxx_2_28_3(), mbedtls_asn1_traverse_sequence_of_ncbicxx_2_28_3(), mbedtls_asn1_write_tag_ncbicxx_2_28_3(), mbedtls_asn1_write_tagged_string_ncbicxx_2_28_3(), mbedtls_ccm_auth_decrypt_ncbicxx_2_28_3(), mbedtls_ccm_encrypt_and_tag_ncbicxx_2_28_3(), mbedtls_ccm_star_auth_decrypt_ncbicxx_2_28_3(), mbedtls_ccm_star_encrypt_and_tag_ncbicxx_2_28_3(), mbedtls_chachapoly_auth_decrypt_ncbicxx_2_28_3(), mbedtls_chachapoly_encrypt_and_tag_ncbicxx_2_28_3(), mbedtls_cipher_aead_decrypt(), mbedtls_cipher_aead_encrypt(), mbedtls_cipher_auth_decrypt_ncbicxx_2_28_3(), mbedtls_cipher_auth_encrypt_ncbicxx_2_28_3(), mbedtls_cipher_check_tag_ncbicxx_2_28_3(), mbedtls_cipher_write_tag_ncbicxx_2_28_3(), mbedtls_gcm_auth_decrypt_ncbicxx_2_28_3(), mbedtls_gcm_crypt_and_tag_ncbicxx_2_28_3(), mbedtls_gcm_finish_ncbicxx_2_28_3(), mbedtls_psa_aead_decrypt_ncbicxx_2_28_3(), mbedtls_psa_aead_encrypt_ncbicxx_2_28_3(), mbedtls_x509_get_ext_ncbicxx_2_28_3(), mbedtls_x509_get_time_ncbicxx_2_28_3(), CNewCleanup_imp::MoveDbxrefs(), compile_time_bits::NotEqual(), CProcessor::OffsetId(), CRepeatToFeat::operator()(), std::operator<<(), CFormattingArgs::ParseFormattingString(), SSNP_Info::ParseSeq_feat(), CObjectIStreamAsnBinary::PeekLongTag(), CArgDescriptions::CPrintUsageXml::PrintArguments(), CHTMLText::PrintBegin(), CReferenceDataType::PrintDTDElement(), CStaticDataType::PrintDTDElement(), CUniSequenceDataType::PrintDTDElement(), CReferenceDataType::PrintDTDExtra(), CUniSequenceDataType::PrintDTDExtra(), CArgAllow_Int8s::PrintUsageXml(), CDataMemberContainerType::PrintXMLSchema(), CEnumDataType::PrintXMLSchema(), CReferenceDataType::PrintXMLSchema(), CStaticDataType::PrintXMLSchema(), CUniSequenceDataType::PrintXMLSchema(), ProcessSAM(), CPhrapReader::Read(), CPhrap_Read::ReadDS(), CPhrap_Read::ReadTag(), CPhrap_Contig::ReadTag(), CProjectItem::RemoveTag(), RemoveTag(), ReplaceTag(), ncbi::grpcapi::dbsnp::primary_track::DbSnpPrimaryTrack::WithRawMethod_ForSeqId< BaseClass >::RequestForSeqId(), ncbi::grpcapi::dbsnp::primary_track::DbSnpPrimaryTrack::WithAsyncMethod_ForSeqId< BaseClass >::RequestForSeqId(), CWGSClient::ResolveGeneral(), CPrimeCacheApplication::Run(), CTestBMApp::Run(), s_AddAttribute(), s_CloseTag(), s_CombineStrings(), SGeneCdsmRnaFeats::s_CreateDBXref(), s_GetAttrByTag(), s_GetChunksForThread(), s_GetDeflineIdString(), CCreateGeneModelTask::s_GetGeneID(), s_GetMD5Tag(), s_GetUserObjectContent(), s_GetVariationDbtagLabel(), s_GetVDBSeverityTag(), s_HasTag(), s_NewDbtagId(), s_OpenTag(), s_OpenTagNoNewline(), s_PartialAtGapOrNs(), s_ScanRecursive(), s_SerializeAndSplitBy(), s_WriteXmlLine(), SERV_ReadInfoEx(), ColumnarVcfCache::SetInfoFields(), IEditMacroFunction::SetQualStringValue(), CProjectItemExtra::SetStr(), CDataType::SetTag(), CTypeInfo::SetTag(), CPointerTypeInfo::SetTag(), CEutilsClient::SetUserTag(), CEditingActionBiosourceDbxref::SetValue(), CEditingActionFeatDbxref::SetValue(), SkipMixedContent(), CObjectIStreamXml::SkipStackTagName(), CObjectIStreamXml::SkipTagName(), SPCollectProtNames(), SPFeatProtRef(), StrToSeqId(), sx_SetTag(), TestOneGeneralSeqId(), CObjectIStreamAsnBinary::UnexpectedMember(), ValNodeExtractUserObject(), VDBLogWriter(), CFlatItemFormatter::Wrap(), CObjectOStreamAsnBinary::WriteClassTag(), CId1FetchApp::WriteHistoryTable(), CLinkUtils::x_AddDbxrefFeatureLinks(), CFeatureTableReader_Imp::x_AddQualifierToFeature(), CDbxrefPanel::x_AddRow(), CDBSourceItem::x_AddSPBlock(), CAlnMultiRenderer::x_AddStatisticsRow(), CPhrap_Read::x_AddTagFeats(), CPhrap_Contig::x_AddTagFeats(), x_Authenticate(), CEditSeqId::x_CollectChangedIds(), CPhrapReader::x_CreateDesc(), CFeatureGenerator::SImplementation::x_CreateGeneFeature(), CGroupAlignmentsJob::x_CreateProjectItems(), CPhrapReader::x_DetectFormatVersion(), CGC_Sequence::x_GetChildren(), CTSE_Info::x_GetFeaturesByLocus(), CTableAnnotDataSource::x_GetMetaInfoTag(), CPhrapReader::x_GetOldTag(), CAlnMultiWidget::x_GetScoringMRUListName(), IOperateOnTwoQuals::x_GetSourceString(), CBamFileInfo::x_Initialize(), CValidError_bioseq::x_IsPartialAtSpliceSiteOrGap(), CTSE_Info::x_MapFeatByLocus(), CGFFReader::x_MergeAttributes(), CGFFReader::x_ParseFeatRecord(), CArgDescriptions::x_PrintAliasesAsXml(), CAgpValidateReader::x_PrintTotals(), CGeneModelFeatJob::x_ProcessLandMarkFeatures(), CPhrapReader::x_ReadContig(), CSparseGraph::x_ReadData(), CAppHitFilter::x_ReadInputHits(), CSparseGraph::x_ReadMap(), CPhrapReader::x_ReadOldFormatData(), CPhrapReader::x_ReadOldSequence(), CPhrapReader::x_ReadRead(), CPhrapReader::x_ReadTag(), CDescrModApply::x_SetDBxref(), x_SetHostPort(), x_SetHttpHostTag(), x_SetRequestIDs(), CPhrapReader::x_SkipTag(), CNewCleanup_imp::x_SplitDbtag(), CSparseGraph::x_Sync(), ASNParser::x_Type(), CPhrapReader::x_UngetTag(), CTSE_Info::x_UnmapFeatByLocus(), CTableAnnotDataSource::x_UpdateMetaInfoTag(), CDbxrefPanel::x_UpdateXrefs(), CGff3Writer::xAssignFeatureAttributeDbxref(), CGff3Writer::xAssignSourceAttributeDbxref(), CGff3FlybaseWriter::xAssignTaxid(), CVcfReader::xAssignVariantProps(), XGappedSeqLocsToDeltaSeqs(), CSrcWriter::xGatherDb(), CSrcWriter::xGatherTaxonId(), CGff3ImportData::xInitializeDbxref(), CGff2Record::xMigrateAttributes(), XMLConcatSubTags(), XMLErrField(), XMLFindTagValue(), XMLIndexSameSubTags(), and XMLStringByTag().