NCBI C++ ToolKit
Classes | Functions
ngalign_app.cpp File Reference
#include <ncbi_pch.hpp>
#include <corelib/ncbiapp.hpp>
#include <corelib/ncbienv.hpp>
#include <corelib/ncbiargs.hpp>
#include <objmgr/object_manager.hpp>
#include <objtools/data_loaders/genbank/gbloader.hpp>
#include <objmgr/scope.hpp>
#include <objects/general/User_object.hpp>
#include <objects/general/User_field.hpp>
#include <objects/general/Object_id.hpp>
#include <objects/seqalign/Seq_align.hpp>
#include <objects/seq/Bioseq.hpp>
#include <objects/seq/Annot_descr.hpp>
#include <objects/seq/Annotdesc.hpp>
#include <objects/seq/seq__.hpp>
#include <objtools/readers/agp_read.hpp>
#include <objtools/readers/agp_seq_entry.hpp>
#include <objtools/data_loaders/blastdb/bdbloader.hpp>
#include <objtools/readers/fasta.hpp>
#include <util/line_reader.hpp>
#include <objects/genomecoll/genome_collection__.hpp>
#include <algo/align/ngalign/ngalign.hpp>
#include <algo/align/ngalign/alignment_filterer.hpp>
#include <algo/align/ngalign/sequence_set.hpp>
#include <algo/align/ngalign/blast_aligner.hpp>
#include <algo/align/ngalign/banded_aligner.hpp>
#include <algo/align/ngalign/merge_aligner.hpp>
#include <algo/align/ngalign/inversion_merge_aligner.hpp>
#include <algo/align/ngalign/alignment_scorer.hpp>
#include <algo/align/ngalign/unordered_spliter.hpp>
#include <algo/align/ngalign/merge_tree_aligner.hpp>
#include <algo/align/ngalign/ngalign_interface.hpp>
#include <objtools/data_loaders/asn_cache/Cache_blob.hpp>
#include <objtools/data_loaders/asn_cache/asn_index.hpp>
#include <objtools/data_loaders/asn_cache/chunk_file.hpp>
#include <objtools/data_loaders/asn_cache/asn_cache_util.hpp>
#include <objtools/data_loaders/asn_cache/seq_id_chunk_file.hpp>
#include <objtools/data_loaders/asn_cache/asn_cache_loader.hpp>
+ Include dependency graph for ngalign_app.cpp:

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Classes

class  CFileLoadAligner
 
class  CNgAlignApp
 

Functions

 USING_SCOPE (objects)
 
 USING_SCOPE (ncbi)
 
int main (int argc, char **argv)
 

Function Documentation

◆ main()

int main ( int  argc,
char **  argv 
)

Definition at line 1139 of file ngalign_app.cpp.

References CNcbiApplicationAPI::AppMain(), and eDS_Default.

◆ USING_SCOPE() [1/2]

USING_SCOPE ( ncbi  )

◆ USING_SCOPE() [2/2]

USING_SCOPE ( objects  )
Modified on Wed Jul 17 13:18:00 2024 by modify_doxy.py rev. 669887