NCBI C++ ToolKit
Classes | Functions | Variables
nuclwordfinder_unit_test.cpp File Reference
#include <ncbi_pch.hpp>
#include <corelib/test_boost.hpp>
#include <corelib/ncbitime.hpp>
#include <corelib/ncbistre.hpp>
#include <objmgr/object_manager.hpp>
#include <objmgr/util/sequence.hpp>
#include <algo/blast/core/blast_encoding.h>
#include <algo/blast/core/blast_options.h>
#include <algo/blast/core/blast_extend.h>
#include <algo/blast/core/blast_nalookup.h>
#include <algo/blast/core/lookup_wrap.h>
#include <algo/blast/core/blast_setup.h>
#include <algo/blast/core/blast_stat.h>
#include <algo/blast/core/blast_util.h>
#include <algo/blast/core/na_ungapped.h>
#include <algo/blast/api/blast_types.hpp>
#include <algo/blast/api/blast_exception.hpp>
#include <blast_objmgr_priv.hpp>
#include "test_objmgr.hpp"
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Classes

struct  NuclWordFinderTextFixture
 

Functions

 USING_SCOPE (objects)
 
 USING_SCOPE (blast)
 
 BOOST_AUTO_TEST_CASE (testWordFinder_8_Aligned_Diag)
 
 BOOST_AUTO_TEST_CASE (testWordFinder_8_Aligned_Stacks)
 
 BOOST_AUTO_TEST_CASE (testWordFinder_8_Diag)
 
 BOOST_AUTO_TEST_CASE (testWordFinder_8_Stacks)
 
 BOOST_AUTO_TEST_CASE (testWordFinder_12_Diag_NoUngap)
 
 BOOST_AUTO_TEST_CASE (testWordFinder_12_Stacks_NoUngap)
 
 BOOST_AUTO_TEST_CASE (testWordFinder_12_Diag)
 
 BOOST_AUTO_TEST_CASE (testWordFinder_12_Stacks)
 
 BOOST_AUTO_TEST_CASE (testWordFinder_Discontig_Direct_Diag_NoUngap)
 
 BOOST_AUTO_TEST_CASE (testWordFinder_Discontig_Direct_Stacks_NoUngap)
 
 BOOST_AUTO_TEST_CASE (testWordFinder_Discontig_Direct_Diag)
 
 BOOST_AUTO_TEST_CASE (testWordFinder_Discontig_Direct_Stacks)
 
 BOOST_AUTO_TEST_CASE (testHitAtEndOfSubject)
 tests for a bug fix to BlastNaExtend. More...
 

Variables

 USING_NCBI_SCOPE
 

Function Documentation

◆ BOOST_AUTO_TEST_CASE() [1/13]

BOOST_AUTO_TEST_CASE ( testHitAtEndOfSubject  )

◆ BOOST_AUTO_TEST_CASE() [2/13]

BOOST_AUTO_TEST_CASE ( testWordFinder_12_Diag  )

Definition at line 398 of file nuclwordfinder_unit_test.cpp.

References eDiagArray, and eMBLookupTable.

◆ BOOST_AUTO_TEST_CASE() [3/13]

BOOST_AUTO_TEST_CASE ( testWordFinder_12_Diag_NoUngap  )

Definition at line 372 of file nuclwordfinder_unit_test.cpp.

References eDiagArray, and eMBLookupTable.

◆ BOOST_AUTO_TEST_CASE() [4/13]

BOOST_AUTO_TEST_CASE ( testWordFinder_12_Stacks  )

Definition at line 410 of file nuclwordfinder_unit_test.cpp.

References eDiagHash, and eMBLookupTable.

◆ BOOST_AUTO_TEST_CASE() [5/13]

BOOST_AUTO_TEST_CASE ( testWordFinder_12_Stacks_NoUngap  )

Definition at line 385 of file nuclwordfinder_unit_test.cpp.

References eDiagHash, and eMBLookupTable.

◆ BOOST_AUTO_TEST_CASE() [6/13]

BOOST_AUTO_TEST_CASE ( testWordFinder_8_Aligned_Diag  )

Definition at line 325 of file nuclwordfinder_unit_test.cpp.

References eDiagArray, and eNaLookupTable.

◆ BOOST_AUTO_TEST_CASE() [7/13]

BOOST_AUTO_TEST_CASE ( testWordFinder_8_Aligned_Stacks  )

Definition at line 337 of file nuclwordfinder_unit_test.cpp.

References eDiagHash, and eNaLookupTable.

◆ BOOST_AUTO_TEST_CASE() [8/13]

BOOST_AUTO_TEST_CASE ( testWordFinder_8_Diag  )

Definition at line 348 of file nuclwordfinder_unit_test.cpp.

References eDiagArray, and eNaLookupTable.

◆ BOOST_AUTO_TEST_CASE() [9/13]

BOOST_AUTO_TEST_CASE ( testWordFinder_8_Stacks  )

Definition at line 360 of file nuclwordfinder_unit_test.cpp.

References eDiagHash, and eNaLookupTable.

◆ BOOST_AUTO_TEST_CASE() [10/13]

BOOST_AUTO_TEST_CASE ( testWordFinder_Discontig_Direct_Diag  )

Definition at line 451 of file nuclwordfinder_unit_test.cpp.

References eDiagArray, and eMBLookupTable.

◆ BOOST_AUTO_TEST_CASE() [11/13]

BOOST_AUTO_TEST_CASE ( testWordFinder_Discontig_Direct_Diag_NoUngap  )

Definition at line 422 of file nuclwordfinder_unit_test.cpp.

References eDiagArray, and eMBLookupTable.

◆ BOOST_AUTO_TEST_CASE() [12/13]

BOOST_AUTO_TEST_CASE ( testWordFinder_Discontig_Direct_Stacks  )

Definition at line 464 of file nuclwordfinder_unit_test.cpp.

References eDiagHash, and eMBLookupTable.

◆ BOOST_AUTO_TEST_CASE() [13/13]

BOOST_AUTO_TEST_CASE ( testWordFinder_Discontig_Direct_Stacks_NoUngap  )

Definition at line 436 of file nuclwordfinder_unit_test.cpp.

References eDiagHash, and eMBLookupTable.

◆ USING_SCOPE() [1/2]

USING_SCOPE ( blast  )

◆ USING_SCOPE() [2/2]

USING_SCOPE ( objects  )

Variable Documentation

◆ USING_NCBI_SCOPE

USING_NCBI_SCOPE

Definition at line 58 of file nuclwordfinder_unit_test.cpp.

Modified on Tue Feb 27 05:53:45 2024 by modify_doxy.py rev. 669887