NCBI C++ ToolKit
Classes | Variables
nw_spliced_aligner32.cpp File Reference
#include <ncbi_pch.hpp>
#include "messages.hpp"
#include <algo/align/nw/nw_spliced_aligner32.hpp>
#include <algo/align/nw/align_exception.hpp>
+ Include dependency graph for nw_spliced_aligner32.cpp:

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Classes

class  CDonorAcceptorMatrix
 

Variables

const unsigned char g_nwspl32_donor [splice_type_count_32][2]
 
const unsigned char g_nwspl32_acceptor [splice_type_count_32][2]
 
const Uint4 kTypeDiag = 0x00000000
 
const Uint4 kTypeGap = 0x40000000
 
const Uint4 kTypeIntron = 0x80000000
 

Variable Documentation

◆ g_nwspl32_acceptor

const unsigned char g_nwspl32_acceptor[splice_type_count_32][2]
Initial value:
= {
{'A','G'},
{'A','G'},
{'A','C'}
}

Definition at line 48 of file nw_spliced_aligner32.cpp.

Referenced by CSplicedAligner32::x_Align().

◆ g_nwspl32_donor

const unsigned char g_nwspl32_donor[splice_type_count_32][2]
Initial value:
= {
{'G','T'},
{'G','C'},
{'A','T'}
}

Definition at line 42 of file nw_spliced_aligner32.cpp.

Referenced by CSplicedAligner32::ScoreFromTranscript(), and CSplicedAligner32::x_Align().

◆ kTypeDiag

const Uint4 kTypeDiag = 0x00000000

◆ kTypeGap

const Uint4 kTypeGap = 0x40000000

Definition at line 58 of file nw_spliced_aligner32.cpp.

Referenced by CSplicedAligner32::x_Align().

◆ kTypeIntron

const Uint4 kTypeIntron = 0x80000000
Modified on Wed Apr 17 13:10:16 2024 by modify_doxy.py rev. 669887