NCBI C++ ToolKit
objmgrfree_query_data.hpp
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1 /* $Id: objmgrfree_query_data.hpp 73406 2016-07-06 14:41:04Z boratyng $
2  * ===========================================================================
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26  * Author: Christiam Camacho, Kevin Bealer
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29 
30 /** @file objmgrfree_query_data.hpp
31  * NOTE: This file contains work in progress and the APIs are likely to change,
32  * please do not rely on them until this notice is removed.
33  */
34 
35 #ifndef ALGO_BLAST_API__OBJMGRFREE_QUERY_DATA__HPP
36 #define ALGO_BLAST_API__OBJMGRFREE_QUERY_DATA__HPP
37 
39 #include <objects/seq/Bioseq.hpp>
40 
41 /** @addtogroup AlgoBlast
42  *
43  * @{
44  */
45 
47 BEGIN_SCOPE(blast)
48 
49 /// NCBI C++ Object Manager free implementation of IQueryFactory
51  public IQueryFactory
52 {
53 public:
54  /// Parametrized constructor taking a single Bioseq
55  /// @param bioseq Bioseq from which to obtain sequence data [in]
57 
58  /// Parametrized constructor taking a Bioseq-set
59  /// @param bioseq_set Bioseq-set from which to obtain sequence data [in]
61 
62 protected:
63  CRef<ILocalQueryData> x_MakeLocalQueryData(const CBlastOptions* opts);
64  CRef<IRemoteQueryData> x_MakeRemoteQueryData();
65 
66 private:
68 };
69 
70 END_SCOPE(blast)
72 
73 /* @} */
74 
75 #endif /* ALGO_BLAST_API__OBJMGRFREE_QUERY_DATA_HPP */
#define NCBI_XBLAST_EXPORT
NULL operations for other cases.
Definition: blast_export.h:65
Encapsulates ALL the BLAST algorithm's options.
NCBI C++ Object Manager free implementation of IQueryFactory.
Source of query sequence data for BLAST Provides an interface for search classes to retrieve sequence...
Definition: query_data.hpp:147
CConstRef< objects::CBioseq_set > m_Bioseqs
#define END_NCBI_SCOPE
End previously defined NCBI scope.
Definition: ncbistl.hpp:103
#define END_SCOPE(ns)
End the previously defined scope.
Definition: ncbistl.hpp:75
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
Definition: ncbistl.hpp:100
#define BEGIN_SCOPE(ns)
Define a new scope.
Definition: ncbistl.hpp:72
NOTE: This file contains work in progress and the APIs are likely to change, please do not rely on th...
Modified on Sat Apr 20 12:14:43 2024 by modify_doxy.py rev. 669887