field_handler.hpp File Reference

#include <corelib/ncbistd.hpp>
#include <objmgr/scope.hpp>
#include <objmgr/bioseq_handle.hpp>
#include <objects/seq/Seqdesc.hpp>
#include <objects/seqfeat/Seq_feat.hpp>
#include <objtools/edit/string_constraint.hpp>
#include <objtools/edit/apply_object.hpp>

Include dependency graph for field_handler.hpp:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Go to the SVN repository for this file.

Classes
class	CFieldHandler
class	CFieldHandlerFactory

Functions
bool	DoesObjectMatchFieldConstraint (const CObject &object, const string &field_name, CRef< CStringConstraint > string_constraint, CRef< CScope > scope)
bool	DoesApplyObjectMatchFieldConstraint (const CApplyObject &object, const string &field_name, CRef< CStringConstraint > string_constraint)
vector< CConstRef< CSeq_feat > >	GetRelatedFeatures (const CSeq_feat &obj_feat, CSeqFeatData::ESubtype constraint_type, CRef< CScope > scope)

Variables
static const string	kFieldTypeSeqId = "SeqId"
const string	kDefinitionLineLabel = "Definition Line"
const string	kCommentDescriptorLabel = "Comment Descriptor"
const string	kGenbankBlockKeyword = "Keyword"

Function Documentation

DoesApplyObjectMatchFieldConstraint()

bool DoesApplyObjectMatchFieldConstraint	(	const CApplyObject &	object,
		const string &	field_name,
		CRef< CStringConstraint >	string_constraint
	)

Definition at line 3613 of file miscedit_util.cpp.

References CFieldHandlerFactory::Create(), CStringConstraint::DoesListMatch(), CMiscSeqTableColumn::GetRelatedObjects(), CMiscSeqTableColumn::GetVals(), NStr::IsBlank(), and ITERATE.

DoesObjectMatchFieldConstraint()

bool DoesObjectMatchFieldConstraint	(	const CObject &	object,
		const string &	field_name,
		CRef< CStringConstraint >	string_constraint,
		CRef< CScope >	scope
	)

Definition at line 3592 of file miscedit_util.cpp.

References CFieldHandlerFactory::Create(), CStringConstraint::DoesListMatch(), CMiscSeqTableColumn::GetRelatedObjects(), CMiscSeqTableColumn::GetVals(), NStr::IsBlank(), and ITERATE.

GetRelatedFeatures()

vector<CConstRef<CSeq_feat> > GetRelatedFeatures	(	const CSeq_feat &	obj_feat,
		CSeqFeatData::ESubtype	constraint_type,
		CRef< CScope >	scope
	)

Definition at line 3130 of file miscedit_util.cpp.

References CSeqFeatData_Base::e_Cdregion, CSeqFeatData_Base::e_Prot, eOverlap_Contained, eOverlap_Contains, CSeqFeatData::eSubtype_any, CSeqFeatData::eSubtype_cdregion, CSeqFeatData::eSubtype_gene, CSeqFeatData::eSubtype_mRNA, f(), GetBestCdsForMrna(), GetBestMrnaForCds(), CScope::GetBioseqHandle(), GetCDSForProduct(), GetCdssForGene(), CSeq_feat_Base::GetData(), CSeq_feat_Base::GetLocation(), GetOverlappingFeatures(), GetOverlappingGene(), CSeq_feat_Base::GetProduct(), CScope::GetSeq_featHandle(), CSeqFeatData::GetSubtype(), CSeqFeatData::GetTypeFromSubtype(), CSeq_feat_Base::IsSetProduct(), ITERATE, and s_GetProtFeatures().

Referenced by CMacroFunction_SetRelFeatQual::TheFunction(), CMacroFunction_EditRelFeatQual::TheFunction(), CMacroFunction_ConvertFeatQual::TheFunction(), CMacroFunction_ConvertRNARelQual::TheFunction(), CMacroFunction_ParseFeatQual::TheFunction(), CMacroFunction_ParseRNARelQual::TheFunction(), CMacroFunction_AddParsedToFeatQual::TheFunction(), CMacroFunction_ParsedTextFrom::TheFunction(), CMacroFunction_CopyFeatQual::TheFunction(), CMacroFunction_CopyRNARelQual::TheFunction(), CMacroFunction_RmvOutsideRelFeatQual::TheFunction(), and CMacroFunction_SwapRelFeatQual::x_DoDestFeatFieldsExist().

Variable Documentation

kCommentDescriptorLabel

const string kCommentDescriptorLabel = "Comment Descriptor"

Definition at line 92 of file field_handler.hpp.

kDefinitionLineLabel

const string kDefinitionLineLabel = "Definition Line"

Definition at line 91 of file field_handler.hpp.

kFieldTypeSeqId

const string kFieldTypeSeqId = "SeqId"

static

Definition at line 90 of file field_handler.hpp.

kGenbankBlockKeyword

const string kGenbankBlockKeyword = "Keyword"

Definition at line 93 of file field_handler.hpp.