bioseq_info.hpp File Reference

#include <corelib/ncbistd.hpp>
#include <corelib/request_status.hpp>
#include <objtools/pubseq_gateway/impl/cassandra/cass_driver.hpp>
#include "IdCassScope.hpp"

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Classes
struct	SBioseqInfo

Functions
CRequestStatus::ECode	FetchCanonicalSeqId (shared_ptr< CCassConnection > conn, const string &keyspace, const string &sec_seq_id, int16_t sec_seq_id_type, bool sec_seq_id_type_provided, string &accession, int16_t &version, int16_t &seq_id_type)
CRequestStatus::ECode	FetchBioseqInfo (shared_ptr< CCassConnection > conn, const string &keyspace, bool version_provided, bool seq_id_type_provided, SBioseqInfo &bioseq_info)

Variables
	USING_NCBI_SCOPE

Function Documentation

FetchBioseqInfo()

CRequestStatus::ECode FetchBioseqInfo	(	shared_ptr< CCassConnection >	conn,
		const string &	keyspace,
		bool	version_provided,
		bool	seq_id_type_provided,
		SBioseqInfo &	bioseq_info
	)

Definition at line 147 of file bioseq_info.cpp.

References ar_dataready, BIOSEQ_INFO_CONSISTENCY, conn, CRequestStatus::e200_Ok, CRequestStatus::e300_MultipleChoices, CRequestStatus::e404_NotFound, fnSeqIdType, fnVersion, SBioseqInfo::m_Accession, SBioseqInfo::m_SeqIdType, SBioseqInfo::m_Version, query, s_GetBioseqValues(), and dtl::version.

FetchCanonicalSeqId()

CRequestStatus::ECode FetchCanonicalSeqId	(	shared_ptr< CCassConnection >	conn,
		const string &	keyspace,
		const string &	sec_seq_id,
		int16_t	sec_seq_id_type,
		bool	sec_seq_id_type_provided,
		string &	accession,
		int16_t &	version,
		int16_t &	seq_id_type
	)

Definition at line 58 of file bioseq_info.cpp.

References ar_dataready, CANONICAL_SEQ_ID_CONSISTENCY, conn, CRequestStatus::e200_Ok, CRequestStatus::e300_MultipleChoices, CRequestStatus::e404_NotFound, query, s_GetCSIValues(), s_Select(), sql, and dtl::version.

Variable Documentation

USING_NCBI_SCOPE

USING_NCBI_SCOPE

Definition at line 44 of file bioseq_info.hpp.