NCBI C++ ToolKit
Classes | Macros | Typedefs | Variables
omssa.hpp File Reference
#include <corelib/ncbistd.hpp>
#include <corelib/ncbiargs.hpp>
#include <corelib/ncbiapp.hpp>
#include <corelib/ncbienv.hpp>
#include <corelib/ncbidiag.hpp>
#include <corelib/ncbiutil.hpp>
#include <corelib/ncbifloat.h>
#include <corelib/ncbifile.hpp>
#include <corelib/ncbithr.hpp>
#include <serial/serial.hpp>
#include <serial/objistrasn.hpp>
#include <serial/objistrasnb.hpp>
#include <serial/objostrasn.hpp>
#include <serial/objostrasnb.hpp>
#include <serial/iterator.hpp>
#include <serial/objostrxml.hpp>
#include <objects/omssa/omssa__.hpp>
#include <objtools/blast/seqdb_reader/seqdb.hpp>
#include "msms.hpp"
#include "msladder.hpp"
#include "mspeak.hpp"
#include <vector>
#include <set>
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Classes

struct  _MassMask
 
class  CSearch< LEGACY, NHITS >
 CSearch –. More...
 
class  CSearchHelper
 class to hold various helper functions for CSearch More...
 

Macros

#define MAXMISSEDCLEAVE   4
 
#define MAXMOD   32
 
#define MAXMOD2   8192
 

Typedefs

typedef void(* TOMSSACallback) (int TotalSeq, int Completed, void *Anything)
 progress callback for CSearch More...
 
typedef struct _MassMask TMassMask
 
typedef multimap< double, CMSHit * > TScoreList
 

Variables

const int kAccLen = 20
 
const double kHighEval = 1e50
 

Macro Definition Documentation

◆ MAXMISSEDCLEAVE

#define MAXMISSEDCLEAVE   4

Definition at line 72 of file omssa.hpp.

◆ MAXMOD

#define MAXMOD   32

Definition at line 75 of file omssa.hpp.

◆ MAXMOD2

#define MAXMOD2   8192

Definition at line 77 of file omssa.hpp.

Typedef Documentation

◆ TMassMask

typedef struct _MassMask TMassMask

◆ TOMSSACallback

typedef void(* TOMSSACallback) (int TotalSeq, int Completed, void *Anything)

progress callback for CSearch

Definition at line 86 of file omssa.hpp.

◆ TScoreList

typedef multimap<double, CMSHit *> TScoreList

Definition at line 106 of file omssa.hpp.

Variable Documentation

◆ kAccLen

const int kAccLen = 20

Definition at line 80 of file omssa.hpp.

◆ kHighEval

const double kHighEval = 1e50

Definition at line 83 of file omssa.hpp.

Referenced by CSearch< LEGACY, NHITS >::SetResult().

Modified on Mon Jul 22 05:05:21 2024 by modify_doxy.py rev. 669887